locus-tag class description JW980_00005 PF00308 Bacterial dnaA protein JW980_00005 PF11638 DnaA N-terminal domain JW980_00005 PF08299 Bacterial dnaA protein helix-turn-helix JW980_00010 PF02767 DNA polymerase III beta subunit, central domain JW980_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JW980_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JW980_00015 PF02463 RecF/RecN/SMC N terminal domain JW980_00020 PF00204 DNA gyrase B JW980_00020 PF18053 DNA gyrase B subunit insert domain JW980_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JW980_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_00020 PF01751 Toprim domain JW980_00030 PF13817 IS66 C-terminal element JW980_00030 PF13007 Transposase C of IS166 homeodomain JW980_00030 PF03050 Transposase IS66 family JW980_00030 PF13005 zinc-finger binding domain of transposase IS66 JW980_00045 PF00005 ABC transporter JW980_00045 PF12848 ABC transporter JW980_00065 PF01521 Iron-sulphur cluster biosynthesis JW980_00080 PF00905 Penicillin binding protein transpeptidase domain JW980_00085 PF00012 Hsp70 protein JW980_00090 PF01025 GrpE JW980_00105 PF07859 alpha/beta hydrolase fold JW980_00115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JW980_00145 PF07690 Major Facilitator Superfamily JW980_00155 PF00209 Sodium:neurotransmitter symporter family JW980_00180 PF01029 NusB family JW980_00180 PF01189 16S rRNA methyltransferase RsmB/F JW980_00185 PF02911 Formyl transferase, C-terminal domain JW980_00185 PF00551 Formyl transferase JW980_00190 PF00920 Dehydratase family JW980_00195 PF00920 Dehydratase family JW980_00220 PF03050 Transposase IS66 family JW980_00220 PF13005 zinc-finger binding domain of transposase IS66 JW980_00220 PF13817 IS66 C-terminal element JW980_00220 PF13007 Transposase C of IS166 homeodomain JW980_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_00235 PF03466 LysR substrate binding domain JW980_00240 PF00860 Permease family JW980_00245 PF00311 Phosphoenolpyruvate carboxylase JW980_00250 PF00440 Bacterial regulatory proteins, tetR family JW980_00255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_00260 PF00873 AcrB/AcrD/AcrF family JW980_00270 PF01556 DnaJ C terminal domain JW980_00270 PF00684 DnaJ central domain JW980_00270 PF00226 DnaJ domain JW980_00280 PF01113 Dihydrodipicolinate reductase, N-terminus JW980_00280 PF05173 Dihydrodipicolinate reductase, C-terminus JW980_00290 PF00145 C-5 cytosine-specific DNA methylase JW980_00290 PF13411 MerR HTH family regulatory protein JW980_00295 PF01385 Probable transposase JW980_00295 PF12323 Helix-turn-helix domain JW980_00295 PF07282 Putative transposase DNA-binding domain JW980_00310 PF00155 Aminotransferase class I and II JW980_00315 PF00107 Zinc-binding dehydrogenase JW980_00315 PF08240 Alcohol dehydrogenase GroES-like domain JW980_00320 PF03352 Methyladenine glycosylase JW980_00335 PF14815 NUDIX domain JW980_00335 PF00633 Helix-hairpin-helix motif JW980_00335 PF00730 HhH-GPD superfamily base excision DNA repair protein JW980_00350 PF13340 Putative transposase of IS4/5 family (DUF4096) JW980_00355 PF07043 Protein of unknown function (DUF1328) JW980_00360 PF03692 Putative zinc- or iron-chelating domain JW980_00365 PF12002 MgsA AAA+ ATPase C terminal JW980_00365 PF16193 AAA C-terminal domain JW980_00365 PF00004 ATPase family associated with various cellular activities (AAA) JW980_00370 PF01810 LysE type translocator JW980_00375 PF01037 Lrp/AsnC ligand binding domain JW980_00380 PF00005 ABC transporter JW980_00385 PF00528 Binding-protein-dependent transport system inner membrane component JW980_00390 PF00528 Binding-protein-dependent transport system inner membrane component JW980_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 JW980_00400 PF01259 SAICAR synthetase JW980_00410 PF00701 Dihydrodipicolinate synthetase family JW980_00415 PF00857 Isochorismatase family JW980_00420 PF01758 Sodium Bile acid symporter family JW980_00425 PF02503 Polyphosphate kinase middle domain JW980_00425 PF13090 Polyphosphate kinase C-terminal domain 2 JW980_00425 PF17941 Polyphosphate kinase C-terminal domain 1 JW980_00425 PF13089 Polyphosphate kinase N-terminal domain JW980_00440 PF13007 Transposase C of IS166 homeodomain JW980_00440 PF13005 zinc-finger binding domain of transposase IS66 JW980_00440 PF03050 Transposase IS66 family JW980_00440 PF13817 IS66 C-terminal element JW980_00465 PF01609 Transposase DDE domain JW980_00465 PF13006 Insertion element 4 transposase N-terminal JW980_00470 PF02580 D-Tyr-tRNA(Tyr) deacylase JW980_00475 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JW980_00475 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JW980_00480 PF00581 Rhodanese-like domain JW980_00485 PF02666 Phosphatidylserine decarboxylase JW980_00490 PF00989 PAS fold JW980_00490 PF00512 His Kinase A (phospho-acceptor) domain JW980_00490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_00490 PF11808 Phosphate regulon sensor protein PhoR JW980_00495 PF00072 Response regulator receiver domain JW980_00495 PF00486 Transcriptional regulatory protein, C terminal JW980_00505 PF00106 short chain dehydrogenase JW980_00510 PF01554 MatE JW980_00515 PF00155 Aminotransferase class I and II JW980_00520 PF04286 Protein of unknown function (DUF445) JW980_00535 PF04262 Glutamate-cysteine ligase JW980_00540 PF02600 Disulfide bond formation protein DsbB JW980_00550 PF05728 Uncharacterised protein family (UPF0227) JW980_00555 PF01751 Toprim domain JW980_00555 PF00204 DNA gyrase B JW980_00555 PF00986 DNA gyrase B subunit, carboxyl terminus JW980_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_00570 PF02653 Branched-chain amino acid transport system / permease component JW980_00580 PF12399 Branched-chain amino acid ATP-binding cassette transporter JW980_00580 PF00005 ABC transporter JW980_00585 PF00005 ABC transporter JW980_00625 PF02683 Cytochrome C biogenesis protein transmembrane region JW980_00625 PF11412 Disulphide bond corrector protein DsbC JW980_00635 PF00990 Diguanylate cyclase, GGDEF domain JW980_00640 PF02525 Flavodoxin-like fold JW980_00645 PF07859 alpha/beta hydrolase fold JW980_00655 PF03960 ArsC family JW980_00660 PF03372 Endonuclease/Exonuclease/phosphatase family JW980_00665 PF00156 Phosphoribosyl transferase domain JW980_00670 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JW980_00670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JW980_00675 PF07715 TonB-dependent Receptor Plug Domain JW980_00675 PF00593 TonB dependent receptor JW980_00685 PF01047 MarR family JW980_00690 PF00255 Glutathione peroxidase JW980_00695 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JW980_00695 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JW980_00700 PF04101 Glycosyltransferase family 28 C-terminal domain JW980_00700 PF03033 Glycosyltransferase family 28 N-terminal domain JW980_00705 PF08245 Mur ligase middle domain JW980_00705 PF02875 Mur ligase family, glutamate ligase domain JW980_00705 PF01225 Mur ligase family, catalytic domain JW980_00710 PF01820 D-ala D-ala ligase N-terminus JW980_00710 PF07478 D-ala D-ala ligase C-terminus JW980_00715 PF03799 Cell division protein FtsQ JW980_00715 PF08478 POTRA domain, FtsQ-type JW980_00720 PF02491 SHS2 domain inserted in FTSA JW980_00725 PF12327 FtsZ family, C-terminal domain JW980_00725 PF00091 Tubulin/FtsZ family, GTPase domain JW980_00730 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JW980_00745 PF00456 Transketolase, thiamine diphosphate binding domain JW980_00745 PF17831 Pyruvate dehydrogenase E1 component middle domain JW980_00750 PF02817 e3 binding domain JW980_00750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JW980_00750 PF00364 Biotin-requiring enzyme JW980_00755 PF01169 Uncharacterized protein family UPF0016 JW980_00765 PF03692 Putative zinc- or iron-chelating domain JW980_00770 PF00478 IMP dehydrogenase / GMP reductase domain JW980_00770 PF00571 CBS domain JW980_00775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JW980_00775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JW980_00775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JW980_00775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JW980_00780 PF01243 Pyridoxamine 5'-phosphate oxidase JW980_00780 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JW980_00785 PF01368 DHH family JW980_00785 PF02272 DHHA1 domain JW980_00785 PF17768 RecJ OB domain JW980_00810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_00815 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JW980_00820 PF04452 RNA methyltransferase JW980_00825 PF00924 Mechanosensitive ion channel JW980_00830 PF13193 AMP-binding enzyme C-terminal domain JW980_00830 PF16177 Acetyl-coenzyme A synthetase N-terminus JW980_00830 PF00501 AMP-binding enzyme JW980_00835 PF00677 Lumazine binding domain JW980_00850 PF00296 Luciferase-like monooxygenase JW980_00855 PF03358 NADPH-dependent FMN reductase JW980_00860 PF00072 Response regulator receiver domain JW980_00860 PF00196 Bacterial regulatory proteins, luxR family JW980_00870 PF00072 Response regulator receiver domain JW980_00870 PF09456 RcsC Alpha-Beta-Loop (ABL) JW980_00870 PF00512 His Kinase A (phospho-acceptor) domain JW980_00870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_00875 PF04341 Protein of unknown function, DUF485 JW980_00880 PF00474 Sodium:solute symporter family JW980_00890 PF02028 BCCT, betaine/carnitine/choline family transporter JW980_00900 PF00990 Diguanylate cyclase, GGDEF domain JW980_00900 PF17158 Membrane-associated sensor, integral membrane domain JW980_00915 PF17760 UvrA interaction domain JW980_00915 PF17755 UvrA DNA-binding domain JW980_00925 PF02581 Thiamine monophosphate synthase JW980_00925 PF08543 Phosphomethylpyrimidine kinase JW980_00925 PF03070 TENA/THI-4/PQQC family JW980_00935 PF07690 Major Facilitator Superfamily JW980_00940 PF00436 Single-strand binding protein family JW980_00945 PF00436 Single-strand binding protein family JW980_00950 PF00206 Lyase JW980_00950 PF10415 Fumarase C C-terminus JW980_00955 PF03466 LysR substrate binding domain JW980_00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_00970 PF01717 Cobalamin-independent synthase, Catalytic domain JW980_00970 PF08267 Cobalamin-independent synthase, N-terminal domain JW980_00975 PF01613 Flavin reductase like domain JW980_00980 PF10417 C-terminal domain of 1-Cys peroxiredoxin JW980_00980 PF00578 AhpC/TSA family JW980_00985 PF03466 LysR substrate binding domain JW980_00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_00990 PF00857 Isochorismatase family JW980_00995 PF05726 Pirin C-terminal cupin domain JW980_00995 PF02678 Pirin JW980_01000 PF01593 Flavin containing amine oxidoreductase JW980_01025 PF02705 K+ potassium transporter JW980_01070 PF01381 Helix-turn-helix JW980_01085 PF13361 UvrD-like helicase C-terminal domain JW980_01085 PF00580 UvrD/REP helicase N-terminal domain JW980_01095 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JW980_01095 PF00271 Helicase conserved C-terminal domain JW980_01095 PF04851 Type III restriction enzyme, res subunit JW980_01095 PF08463 EcoEI R protein C-terminal JW980_01105 PF01420 Type I restriction modification DNA specificity domain JW980_01110 PF12161 HsdM N-terminal domain JW980_01110 PF02384 N-6 DNA Methylase JW980_01120 PF01381 Helix-turn-helix JW980_01125 PF13737 Transposase DDE domain JW980_01145 PF02627 Carboxymuconolactone decarboxylase family JW980_01155 PF00085 Thioredoxin JW980_01160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_01165 PF01323 DSBA-like thioredoxin domain JW980_01170 PF01810 LysE type translocator JW980_01175 PF13737 Transposase DDE domain JW980_01215 PF13936 Helix-turn-helix domain JW980_01215 PF00665 Integrase core domain JW980_01255 PF00977 Histidine biosynthesis protein JW980_01260 PF01636 Phosphotransferase enzyme family JW980_01265 PF00313 'Cold-shock' DNA-binding domain JW980_01280 PF00324 Amino acid permease JW980_01285 PF01266 FAD dependent oxidoreductase JW980_01295 PF01381 Helix-turn-helix JW980_01300 PF00977 Histidine biosynthesis protein JW980_01315 PF00117 Glutamine amidotransferase class-I JW980_01320 PF00475 Imidazoleglycerol-phosphate dehydratase JW980_01345 PF00583 Acetyltransferase (GNAT) family JW980_01350 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JW980_01350 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JW980_01355 PF00512 His Kinase A (phospho-acceptor) domain JW980_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_01355 PF00672 HAMP domain JW980_01360 PF00486 Transcriptional regulatory protein, C terminal JW980_01360 PF00072 Response regulator receiver domain JW980_01365 PF16921 Tex protein YqgF-like domain JW980_01365 PF09371 Tex-like protein N-terminal domain JW980_01365 PF17674 HHH domain JW980_01365 PF00575 S1 RNA binding domain JW980_01395 PF00106 short chain dehydrogenase JW980_01400 PF01053 Cys/Met metabolism PLP-dependent enzyme JW980_01405 PF12848 ABC transporter JW980_01405 PF00005 ABC transporter JW980_01425 PF00749 tRNA synthetases class I (E and Q), catalytic domain JW980_01450 PF13817 IS66 C-terminal element JW980_01450 PF13007 Transposase C of IS166 homeodomain JW980_01450 PF03050 Transposase IS66 family JW980_01450 PF13005 zinc-finger binding domain of transposase IS66 JW980_01480 PF13005 zinc-finger binding domain of transposase IS66 JW980_01480 PF13007 Transposase C of IS166 homeodomain JW980_01480 PF13817 IS66 C-terminal element JW980_01480 PF03050 Transposase IS66 family JW980_01505 PF01795 MraW methylase family JW980_01515 PF03717 Penicillin-binding Protein dimerisation domain JW980_01515 PF00905 Penicillin binding protein transpeptidase domain JW980_01520 PF01225 Mur ligase family, catalytic domain JW980_01520 PF02875 Mur ligase family, glutamate ligase domain JW980_01520 PF08245 Mur ligase middle domain JW980_01525 PF01225 Mur ligase family, catalytic domain JW980_01525 PF02875 Mur ligase family, glutamate ligase domain JW980_01525 PF08245 Mur ligase middle domain JW980_01530 PF00953 Glycosyl transferase family 4 JW980_01535 PF13847 Methyltransferase domain JW980_01540 PF00905 Penicillin binding protein transpeptidase domain JW980_01540 PF17092 Penicillin-binding protein OB-like domain JW980_01540 PF00912 Transglycosylase JW980_01545 PF11104 Type IV pilus assembly protein PilM; JW980_01550 PF05137 Fimbrial assembly protein (PilN) JW980_01555 PF04350 Pilus assembly protein, PilO JW980_01565 PF03958 Bacterial type II/III secretion system short domain JW980_01565 PF00263 Bacterial type II and III secretion system protein JW980_01565 PF07660 Secretin and TonB N terminus short domain JW980_01565 PF11741 AMIN domain JW980_01570 PF01202 Shikimate kinase JW980_01575 PF01761 3-dehydroquinate synthase JW980_01585 PF00310 Glutamine amidotransferases class-II JW980_01585 PF01645 Conserved region in glutamate synthase JW980_01585 PF04898 Glutamate synthase central domain JW980_01585 PF01493 GXGXG motif JW980_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_01590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JW980_01600 PF04011 LemA family JW980_01605 PF04536 TPM domain JW980_01670 PF00114 Pilin (bacterial filament) JW980_01670 PF07963 Prokaryotic N-terminal methylation motif JW980_01680 PF00114 Pilin (bacterial filament) JW980_01680 PF07963 Prokaryotic N-terminal methylation motif JW980_01695 PF00210 Ferritin-like domain JW980_01700 PF04324 BFD-like [2Fe-2S] binding domain JW980_01705 PF01042 Endoribonuclease L-PSP JW980_01710 PF02824 TGS domain JW980_01710 PF04607 Region found in RelA / SpoT proteins JW980_01710 PF13291 ACT domain JW980_01715 PF01192 RNA polymerase Rpb6 JW980_01720 PF00625 Guanylate kinase JW980_01725 PF02401 LytB protein JW980_01730 PF07963 Prokaryotic N-terminal methylation motif JW980_01730 PF00114 Pilin (bacterial filament) JW980_01755 PF00114 Pilin (bacterial filament) JW980_01755 PF07963 Prokaryotic N-terminal methylation motif JW980_01765 PF00886 Ribosomal protein S16 JW980_01770 PF01782 RimM N-terminal domain JW980_01770 PF05239 PRC-barrel domain JW980_01775 PF01746 tRNA (Guanine-1)-methyltransferase JW980_01780 PF01245 Ribosomal protein L19 JW980_01785 PF00561 alpha/beta hydrolase fold JW980_01790 PF00561 alpha/beta hydrolase fold JW980_01795 PF03280 Proteobacterial lipase chaperone protein JW980_01800 PF01509 TruB family pseudouridylate synthase (N terminal domain) JW980_01800 PF09157 Pseudouridine synthase II TruB, C-terminal JW980_01800 PF16198 tRNA pseudouridylate synthase B C-terminal domain JW980_01805 PF01925 Sulfite exporter TauE/SafE JW980_01815 PF00892 EamA-like transporter family JW980_01820 PF00892 EamA-like transporter family JW980_01825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JW980_01825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JW980_01830 PF02913 FAD linked oxidases, C-terminal domain JW980_01830 PF01565 FAD binding domain JW980_01845 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_01845 PF13359 DDE superfamily endonuclease JW980_01865 PF02678 Pirin JW980_01865 PF05726 Pirin C-terminal cupin domain JW980_01870 PF07690 Major Facilitator Superfamily JW980_01875 PF12823 Domain of unknown function (DUF3817) JW980_01880 PF12805 FUSC-like inner membrane protein yccS JW980_01885 PF00080 Copper/zinc superoxide dismutase (SODC) JW980_01890 PF01594 AI-2E family transporter JW980_01895 PF13614 AAA domain JW980_01905 PF01209 ubiE/COQ5 methyltransferase family JW980_01920 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JW980_01925 PF01197 Ribosomal protein L31 JW980_01930 PF03109 ABC1 family JW980_01940 PF01554 MatE JW980_01950 PF06969 HemN C-terminal domain JW980_01950 PF04055 Radical SAM superfamily JW980_01960 PF01965 DJ-1/PfpI family JW980_01970 PF12806 Acetyl-CoA dehydrogenase C-terminal like JW980_01970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_01970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_01970 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_01980 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JW980_01980 PF01488 Shikimate / quinate 5-dehydrogenase JW980_01980 PF08501 Shikimate dehydrogenase substrate binding domain JW980_01990 PF01218 Coproporphyrinogen III oxidase JW980_01995 PF06969 HemN C-terminal domain JW980_01995 PF04055 Radical SAM superfamily JW980_02000 PF00925 GTP cyclohydrolase II JW980_02005 PF02779 Transketolase, pyrimidine binding domain JW980_02005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JW980_02005 PF02780 Transketolase, C-terminal domain JW980_02010 PF00459 Inositol monophosphatase family JW980_02015 PF00271 Helicase conserved C-terminal domain JW980_02015 PF00270 DEAD/DEAH box helicase JW980_02020 PF00005 ABC transporter JW980_02025 PF02405 Permease MlaE JW980_02030 PF02470 MlaD protein JW980_02035 PF05494 MlaC protein JW980_02045 PF01544 CorA-like Mg2+ transporter protein JW980_02050 PF03641 Possible lysine decarboxylase JW980_02055 PF00293 NUDIX domain JW980_02060 PF00156 Phosphoribosyl transferase domain JW980_02065 PF17191 RecG wedge domain JW980_02065 PF00271 Helicase conserved C-terminal domain JW980_02065 PF00270 DEAD/DEAH box helicase JW980_02085 PF01553 Acyltransferase JW980_02095 PF00375 Sodium:dicarboxylate symporter family JW980_02105 PF01926 50S ribosome-binding GTPase JW980_02110 PF02082 Transcriptional regulator JW980_02115 PF00042 Globin JW980_02115 PF00175 Oxidoreductase NAD-binding domain JW980_02115 PF00970 Oxidoreductase FAD-binding domain JW980_02120 PF05872 Bacterial protein of unknown function (DUF853) JW980_02125 PF01053 Cys/Met metabolism PLP-dependent enzyme JW980_02130 PF00117 Glutamine amidotransferase class-I JW980_02135 PF00338 Ribosomal protein S10p/S20e JW980_02140 PF00297 Ribosomal protein L3 JW980_02145 PF00573 Ribosomal protein L4/L1 family JW980_02150 PF00276 Ribosomal protein L23 JW980_02155 PF00181 Ribosomal Proteins L2, RNA binding domain JW980_02155 PF03947 Ribosomal Proteins L2, C-terminal domain JW980_02160 PF00203 Ribosomal protein S19 JW980_02165 PF00237 Ribosomal protein L22p/L17e JW980_02170 PF00189 Ribosomal protein S3, C-terminal domain JW980_02170 PF07650 KH domain JW980_02175 PF00252 Ribosomal protein L16p/L10e JW980_02180 PF00831 Ribosomal L29 protein JW980_02185 PF00366 Ribosomal protein S17 JW980_02190 PF00238 Ribosomal protein L14p/L23e JW980_02195 PF00467 KOW motif JW980_02195 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JW980_02200 PF00281 Ribosomal protein L5 JW980_02200 PF00673 ribosomal L5P family C-terminus JW980_02205 PF00253 Ribosomal protein S14p/S29e JW980_02210 PF00410 Ribosomal protein S8 JW980_02215 PF00347 Ribosomal protein L6 JW980_02220 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JW980_02225 PF00333 Ribosomal protein S5, N-terminal domain JW980_02225 PF03719 Ribosomal protein S5, C-terminal domain JW980_02230 PF00327 Ribosomal protein L30p/L7e JW980_02235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JW980_02240 PF00344 SecY translocase JW980_02245 PF00444 Ribosomal protein L36 JW980_02250 PF00416 Ribosomal protein S13/S18 JW980_02255 PF00411 Ribosomal protein S11 JW980_02260 PF01479 S4 domain JW980_02260 PF00163 Ribosomal protein S4/S9 N-terminal domain JW980_02265 PF01000 RNA polymerase Rpb3/RpoA insert domain JW980_02265 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JW980_02265 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JW980_02270 PF01196 Ribosomal protein L17 JW980_02275 PF00743 Flavin-binding monooxygenase-like JW980_02285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_02285 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_02285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_02290 PF03937 Flavinator of succinate dehydrogenase JW980_02320 PF09526 Probable metal-binding protein (DUF2387) JW980_02325 PF01432 Peptidase family M3 JW980_02330 PF04294 VanW like protein JW980_02335 PF17876 Cold shock domain JW980_02335 PF08461 Ribonuclease R winged-helix domain JW980_02335 PF00575 S1 RNA binding domain JW980_02335 PF00773 RNB domain JW980_02335 PF08206 Ribonuclease B OB domain JW980_02365 PF01557 Fumarylacetoacetate (FAA) hydrolase family JW980_02380 PF03631 Virulence factor BrkB JW980_02385 PF03358 NADPH-dependent FMN reductase JW980_02425 PF02130 Uncharacterized protein family UPF0054 JW980_02430 PF02562 PhoH-like protein JW980_02435 PF00919 Uncharacterized protein family UPF0004 JW980_02435 PF01938 TRAM domain JW980_02435 PF04055 Radical SAM superfamily JW980_02440 PF10145 Phage-related minor tail protein JW980_02440 PF01464 Transglycosylase SLT domain JW980_02440 PF01551 Peptidase family M23 JW980_02450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JW980_02450 PF00056 lactate/malate dehydrogenase, NAD binding domain JW980_02475 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JW980_02480 PF01066 CDP-alcohol phosphatidyltransferase JW980_02515 PF03050 Transposase IS66 family JW980_02515 PF13817 IS66 C-terminal element JW980_02515 PF13005 zinc-finger binding domain of transposase IS66 JW980_02515 PF13007 Transposase C of IS166 homeodomain JW980_02530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_02530 PF00403 Heavy-metal-associated domain JW980_02530 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_02540 PF00753 Metallo-beta-lactamase superfamily JW980_02540 PF04273 Putative phosphatase (DUF442) JW980_02550 PF00085 Thioredoxin JW980_02555 PF03061 Thioesterase superfamily JW980_02570 PF04461 Protein of unknown function (DUF520) JW980_02580 PF01266 FAD dependent oxidoreductase JW980_02580 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JW980_02590 PF03795 YCII-related domain JW980_02595 PF04279 Intracellular septation protein A JW980_02600 PF02811 PHP domain JW980_02605 PF01062 Bestrophin, RFP-TM, chloride channel JW980_02610 PF04002 RadC-like JAB domain JW980_02615 PF04127 DNA / pantothenate metabolism flavoprotein JW980_02615 PF02441 Flavoprotein JW980_02625 PF02556 Preprotein translocase subunit SecB JW980_02630 PF00462 Glutaredoxin JW980_02640 PF03193 RsgA GTPase JW980_02645 PF00929 Exonuclease JW980_02670 PF02321 Outer membrane efflux protein JW980_02675 PF12704 MacB-like periplasmic core domain JW980_02675 PF00005 ABC transporter JW980_02675 PF02687 FtsX-like permease family JW980_02680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_02695 PF08264 Anticodon-binding domain of tRNA JW980_02695 PF00133 tRNA synthetases class I (I, L, M and V) JW980_02695 PF13603 Leucyl-tRNA synthetase, Domain 2 JW980_02695 PF09334 tRNA synthetases class I (M) JW980_02705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JW980_02705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JW980_02705 PF00205 Thiamine pyrophosphate enzyme, central domain JW980_02710 PF10369 Small subunit of acetolactate synthase JW980_02715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JW980_02715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JW980_02740 PF00534 Glycosyl transferases group 1 JW980_02740 PF13439 Glycosyltransferase Family 4 JW980_02745 PF01569 PAP2 superfamily JW980_02750 PF04384 Iron-sulphur cluster assembly JW980_02755 PF00334 Nucleoside diphosphate kinase JW980_02760 PF04055 Radical SAM superfamily JW980_02770 PF13464 Domain of unknown function (DUF4115) JW980_02775 PF04551 GcpE protein JW980_02780 PF13393 Histidyl-tRNA synthetase JW980_02780 PF03129 Anticodon binding domain JW980_02790 PF01011 PQQ enzyme repeat JW980_02790 PF13360 PQQ-like domain JW980_02795 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JW980_02795 PF01926 50S ribosome-binding GTPase JW980_02800 PF01648 4'-phosphopantetheinyl transferase superfamily JW980_02805 PF07549 SecD/SecF GG Motif JW980_02805 PF02355 Protein export membrane protein JW980_02810 PF07549 SecD/SecF GG Motif JW980_02810 PF02355 Protein export membrane protein JW980_02810 PF13721 SecD export protein N-terminal TM region JW980_02815 PF02699 Preprotein translocase subunit JW980_02820 PF01702 Queuine tRNA-ribosyltransferase JW980_02830 PF07282 Putative transposase DNA-binding domain JW980_02830 PF12323 Helix-turn-helix domain JW980_02830 PF01385 Probable transposase JW980_02835 PF01797 Transposase IS200 like JW980_02845 PF02547 Queuosine biosynthesis protein JW980_02855 PF00672 HAMP domain JW980_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_02855 PF00512 His Kinase A (phospho-acceptor) domain JW980_02855 PF13426 PAS domain JW980_02860 PF03710 Glutamate-ammonia ligase adenylyltransferase JW980_02860 PF08335 GlnD PII-uridylyltransferase JW980_02865 PF01063 Amino-transferase class IV JW980_02870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JW980_02870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JW980_02880 PF00535 Glycosyl transferase family 2 JW980_02890 PF00534 Glycosyl transferases group 1 JW980_02890 PF13439 Glycosyltransferase Family 4 JW980_02930 PF00152 tRNA synthetases class II (D, K and N) JW980_02930 PF02938 GAD domain JW980_02930 PF01336 OB-fold nucleic acid binding domain JW980_02940 PF00593 TonB dependent receptor JW980_02940 PF07715 TonB-dependent Receptor Plug Domain JW980_02960 PF06146 Phosphate-starvation-inducible E JW980_02965 PF13005 zinc-finger binding domain of transposase IS66 JW980_02965 PF13007 Transposase C of IS166 homeodomain JW980_02965 PF13817 IS66 C-terminal element JW980_02965 PF03050 Transposase IS66 family JW980_02980 PF12806 Acetyl-CoA dehydrogenase C-terminal like JW980_02980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_02980 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_02980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_02985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_02985 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_02985 PF12806 Acetyl-CoA dehydrogenase C-terminal like JW980_02985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_02995 PF00512 His Kinase A (phospho-acceptor) domain JW980_02995 PF00672 HAMP domain JW980_03000 PF00072 Response regulator receiver domain JW980_03000 PF00486 Transcriptional regulatory protein, C terminal JW980_03005 PF00324 Amino acid permease JW980_03015 PF04237 YjbR JW980_03020 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JW980_03040 PF01923 Cobalamin adenosyltransferase JW980_03045 PF00593 TonB dependent receptor JW980_03045 PF07715 TonB-dependent Receptor Plug Domain JW980_03050 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JW980_03055 PF00291 Pyridoxal-phosphate dependent enzyme JW980_03080 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_03080 PF12833 Helix-turn-helix domain JW980_03095 PF00290 Tryptophan synthase alpha chain JW980_03100 PF01039 Carboxyl transferase domain JW980_03105 PF02875 Mur ligase family, glutamate ligase domain JW980_03105 PF08245 Mur ligase middle domain JW980_03120 PF00753 Metallo-beta-lactamase superfamily JW980_03125 PF10417 C-terminal domain of 1-Cys peroxiredoxin JW980_03125 PF00578 AhpC/TSA family JW980_03140 PF02810 SEC-C motif JW980_03140 PF01043 SecA preprotein cross-linking domain JW980_03140 PF07516 SecA Wing and Scaffold domain JW980_03140 PF07517 SecA DEAD-like domain JW980_03150 PF01960 ArgJ family JW980_03155 PF02445 Quinolinate synthetase A protein JW980_03185 PF17152 Periplasmic sensor domain JW980_03185 PF00990 Diguanylate cyclase, GGDEF domain JW980_03190 PF13689 YfiR/HmsC-like JW980_03245 PF04386 Stringent starvation protein B JW980_03250 PF02798 Glutathione S-transferase, N-terminal domain JW980_03250 PF00043 Glutathione S-transferase, C-terminal domain JW980_03260 PF00380 Ribosomal protein S9/S16 JW980_03265 PF00572 Ribosomal protein L13 JW980_03270 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JW980_03275 PF00398 Ribosomal RNA adenine dimethylase JW980_03280 PF00149 Calcineurin-like phosphoesterase JW980_03305 PF01926 50S ribosome-binding GTPase JW980_03305 PF13167 GTP-binding GTPase N-terminal JW980_03305 PF16360 GTP-binding GTPase Middle Region JW980_03315 PF13091 PLD-like domain JW980_03320 PF10518 TAT (twin-arginine translocation) pathway signal sequence JW980_03320 PF00149 Calcineurin-like phosphoesterase JW980_03330 PF00083 Sugar (and other) transporter JW980_03330 PF07690 Major Facilitator Superfamily JW980_03335 PF03006 Haemolysin-III related JW980_03345 PF13673 Acetyltransferase (GNAT) domain JW980_03355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JW980_03355 PF00378 Enoyl-CoA hydratase/isomerase JW980_03355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JW980_03360 PF02803 Thiolase, C-terminal domain JW980_03360 PF00108 Thiolase, N-terminal domain JW980_03365 PF02311 AraC-like ligand binding domain JW980_03365 PF12833 Helix-turn-helix domain JW980_03370 PF02515 CoA-transferase family III JW980_03375 PF04966 Carbohydrate-selective porin, OprB family JW980_03380 PF01011 PQQ enzyme repeat JW980_03385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JW980_03385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JW980_03400 PF00893 Small Multidrug Resistance protein JW980_03410 PF02803 Thiolase, C-terminal domain JW980_03410 PF00108 Thiolase, N-terminal domain JW980_03420 PF00691 OmpA family JW980_03420 PF13505 Outer membrane protein beta-barrel domain JW980_03425 PF00324 Amino acid permease JW980_03430 PF08468 Methyltransferase small domain N-terminal JW980_03430 PF05175 Methyltransferase small domain JW980_03435 PF00860 Permease family JW980_03440 PF03144 Elongation factor Tu domain 2 JW980_03440 PF00009 Elongation factor Tu GTP binding domain JW980_03440 PF00679 Elongation factor G C-terminus JW980_03445 PF01741 Large-conductance mechanosensitive channel, MscL JW980_03455 PF09312 SurA N-terminal domain JW980_03455 PF00639 PPIC-type PPIASE domain JW980_03460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JW980_03460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JW980_03460 PF06827 Zinc finger found in FPG and IleRS JW980_03465 PF04966 Carbohydrate-selective porin, OprB family JW980_03470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_03510 PF00694 Aconitase C-terminal domain JW980_03510 PF00330 Aconitase family (aconitate hydratase) JW980_03555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JW980_03560 PF00849 RNA pseudouridylate synthase JW980_03580 PF04343 Protein of unknown function, DUF488 JW980_03585 PF03831 PhnA domain JW980_03585 PF08274 PhnA Zinc-Ribbon JW980_03595 PF07411 Domain of unknown function (DUF1508) JW980_03615 PF01207 Dihydrouridine synthase (Dus) JW980_03620 PF00005 ABC transporter JW980_03620 PF12848 ABC transporter JW980_03635 PF02978 Signal peptide binding domain JW980_03635 PF00448 SRP54-type protein, GTPase domain JW980_03635 PF02881 SRP54-type protein, helical bundle domain JW980_03645 PF03309 Type III pantothenate kinase JW980_03655 PF01925 Sulfite exporter TauE/SafE JW980_03665 PF02463 RecF/RecN/SMC N terminal domain JW980_03665 PF06470 SMC proteins Flexible Hinge Domain JW980_03670 PF04354 ZipA, C-terminal FtsZ-binding domain JW980_03675 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JW980_03675 PF00533 BRCA1 C Terminus (BRCT) domain JW980_03675 PF01653 NAD-dependent DNA ligase adenylation domain JW980_03675 PF03120 NAD-dependent DNA ligase OB-fold domain JW980_03675 PF12826 Helix-hairpin-helix motif JW980_03680 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JW980_03685 PF07715 TonB-dependent Receptor Plug Domain JW980_03685 PF00593 TonB dependent receptor JW980_03705 PF00210 Ferritin-like domain JW980_03710 PF00578 AhpC/TSA family JW980_03715 PF08241 Methyltransferase domain JW980_03715 PF12697 Alpha/beta hydrolase family JW980_03720 PF04055 Radical SAM superfamily JW980_03720 PF06968 Biotin and Thiamin Synthesis associated domain JW980_03720 PF00202 Aminotransferase class-III JW980_03725 PF00155 Aminotransferase class I and II JW980_03740 PF02472 Biopolymer transport protein ExbD/TolR JW980_03745 PF02472 Biopolymer transport protein ExbD/TolR JW980_03750 PF01618 MotA/TolQ/ExbB proton channel family JW980_03760 PF00593 TonB dependent receptor JW980_03760 PF07715 TonB-dependent Receptor Plug Domain JW980_03780 PF00528 Binding-protein-dependent transport system inner membrane component JW980_03785 PF00528 Binding-protein-dependent transport system inner membrane component JW980_03785 PF12911 N-terminal TM domain of oligopeptide transport permease C JW980_03790 PF00005 ABC transporter JW980_03790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JW980_03795 PF01479 S4 domain JW980_03795 PF00849 RNA pseudouridylate synthase JW980_03800 PF04079 Segregation and condensation complex subunit ScpB JW980_03805 PF02616 Segregation and condensation protein ScpA JW980_03810 PF00884 Sulfatase JW980_03820 PF01300 Telomere recombination JW980_03825 PF04315 Elongation factor P hydroxylase JW980_03830 PF02620 Large ribosomal RNA subunit accumulation protein YceD JW980_03835 PF01783 Ribosomal L32p protein family JW980_03840 PF00698 Acyl transferase domain JW980_03850 PF00550 Phosphopantetheine attachment site JW980_03855 PF04972 BON domain JW980_03855 PF01476 LysM domain JW980_03860 PF00392 Bacterial regulatory proteins, gntR family JW980_03860 PF07729 FCD domain JW980_03865 PF00289 Biotin carboxylase, N-terminal domain JW980_03865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_03865 PF02785 Biotin carboxylase C-terminal domain JW980_03870 PF01425 Amidase JW980_03885 PF03527 RHS protein JW980_03885 PF05593 RHS Repeat JW980_03905 PF00268 Ribonucleotide reductase, small chain JW980_03910 PF03477 ATP cone domain JW980_03910 PF02867 Ribonucleotide reductase, barrel domain JW980_03910 PF00317 Ribonucleotide reductase, all-alpha domain JW980_03915 PF00072 Response regulator receiver domain JW980_03915 PF00486 Transcriptional regulatory protein, C terminal JW980_03920 PF00672 HAMP domain JW980_03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_03920 PF00512 His Kinase A (phospho-acceptor) domain JW980_03930 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JW980_03935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JW980_03940 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JW980_03940 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JW980_03950 PF10531 SLBB domain JW980_03950 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JW980_03950 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JW980_03955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JW980_03955 PF00384 Molybdopterin oxidoreductase JW980_03955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JW980_03960 PF00146 NADH dehydrogenase JW980_03965 PF12838 4Fe-4S dicluster domain JW980_03970 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JW980_03975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JW980_03980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JW980_03980 PF00361 Proton-conducting membrane transporter JW980_03985 PF00361 Proton-conducting membrane transporter JW980_03990 PF00361 Proton-conducting membrane transporter JW980_04000 PF00313 'Cold-shock' DNA-binding domain JW980_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_04010 PF03466 LysR substrate binding domain JW980_04015 PF00175 Oxidoreductase NAD-binding domain JW980_04015 PF00970 Oxidoreductase FAD-binding domain JW980_04040 PF10458 Valyl tRNA synthetase tRNA binding arm JW980_04040 PF00133 tRNA synthetases class I (I, L, M and V) JW980_04040 PF08264 Anticodon-binding domain of tRNA JW980_04060 PF01906 Putative heavy-metal-binding JW980_04065 PF01906 Putative heavy-metal-binding JW980_04070 PF02321 Outer membrane efflux protein JW980_04075 PF00873 AcrB/AcrD/AcrF family JW980_04080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_04080 PF00529 HlyD membrane-fusion protein of T1SS JW980_04085 PF01569 PAP2 superfamily JW980_04095 PF00348 Polyprenyl synthetase JW980_04100 PF00829 Ribosomal prokaryotic L21 protein JW980_04105 PF01016 Ribosomal L27 protein JW980_04115 PF03548 Outer membrane lipoprotein carrier protein LolA JW980_04125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JW980_04125 PF02403 Seryl-tRNA synthetase N-terminal domain JW980_04130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JW980_04130 PF10414 Sirohaem synthase dimerisation region JW980_04130 PF14824 Sirohaem biosynthesis protein central JW980_04135 PF00588 SpoU rRNA Methylase family JW980_04150 PF03358 NADPH-dependent FMN reductase JW980_04155 PF13520 Amino acid permease JW980_04160 PF00465 Iron-containing alcohol dehydrogenase JW980_04170 PF03099 Biotin/lipoate A/B protein ligase family JW980_04175 PF04359 Protein of unknown function (DUF493) JW980_04180 PF00140 Sigma-70 factor, region 1.2 JW980_04180 PF04542 Sigma-70 region 2 JW980_04180 PF04546 Sigma-70, non-essential region JW980_04180 PF04539 Sigma-70 region 3 JW980_04180 PF04545 Sigma-70, region 4 JW980_04180 PF03979 Sigma-70 factor, region 1.1 JW980_04195 PF01810 LysE type translocator JW980_04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_04200 PF03466 LysR substrate binding domain JW980_04210 PF09335 SNARE associated Golgi protein JW980_04220 PF17773 UPF0176 acylphosphatase like domain JW980_04220 PF00581 Rhodanese-like domain JW980_04230 PF01810 LysE type translocator JW980_04235 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JW980_04250 PF02261 Aspartate decarboxylase JW980_04255 PF01195 Peptidyl-tRNA hydrolase JW980_04260 PF01386 Ribosomal L25p family JW980_04265 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JW980_04265 PF14572 Phosphoribosyl synthetase-associated domain JW980_04290 PF08544 GHMP kinases C terminal JW980_04290 PF00288 GHMP kinases N terminal domain JW980_04295 PF03550 Outer membrane lipoprotein LolB JW980_04305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JW980_04305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JW980_04305 PF01488 Shikimate / quinate 5-dehydrogenase JW980_04310 PF08275 DNA primase catalytic core, N-terminal domain JW980_04310 PF08278 DNA primase DnaG DnaB-binding JW980_04310 PF01807 CHC2 zinc finger JW980_04310 PF10410 DnaB-helicase binding domain of primase JW980_04315 PF13525 Outer membrane lipoprotein JW980_04320 PF00849 RNA pseudouridylate synthase JW980_04320 PF01479 S4 domain JW980_04325 PF02578 Multi-copper polyphenol oxidoreductase laccase JW980_04330 PF03358 NADPH-dependent FMN reductase JW980_04335 PF01668 SmpB protein JW980_04340 PF01467 Cytidylyltransferase-like JW980_04345 PF00037 4Fe-4S binding domain JW980_04370 PF02540 NAD synthase JW980_04370 PF00795 Carbon-nitrogen hydrolase JW980_04375 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JW980_04375 PF04717 Type VI secretion system, phage-baseplate injector JW980_04375 PF13296 Putative type VI secretion system Rhs element Vgr JW980_04395 PF00743 Flavin-binding monooxygenase-like JW980_04400 PF00285 Citrate synthase, C-terminal domain JW980_04405 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JW980_04410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JW980_04415 PF00890 FAD binding domain JW980_04415 PF02910 Fumarate reductase flavoprotein C-term JW980_04420 PF13085 2Fe-2S iron-sulfur cluster binding domain JW980_04425 PF00676 Dehydrogenase E1 component JW980_04425 PF02779 Transketolase, pyrimidine binding domain JW980_04425 PF16078 2-oxoglutarate dehydrogenase N-terminus JW980_04425 PF16870 2-oxoglutarate dehydrogenase C-terminal JW980_04430 PF00364 Biotin-requiring enzyme JW980_04430 PF02817 e3 binding domain JW980_04430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JW980_04435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_04435 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_04440 PF08442 ATP-grasp domain JW980_04440 PF00549 CoA-ligase JW980_04445 PF00549 CoA-ligase JW980_04445 PF02629 CoA binding domain JW980_04455 PF13737 Transposase DDE domain JW980_04460 PF01145 SPFH domain / Band 7 family JW980_04460 PF15975 Flotillin JW980_04465 PF07290 Protein of unknown function (DUF1449) JW980_04470 PF00579 tRNA synthetases class I (W and Y) JW980_04475 PF05661 Protein of unknown function (DUF808) JW980_04480 PF04228 Putative neutral zinc metallopeptidase JW980_04490 PF00999 Sodium/hydrogen exchanger family JW980_04510 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_04515 PF01272 Transcription elongation factor, GreA/GreB, C-term JW980_04515 PF03449 Transcription elongation factor, N-terminal JW980_04520 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JW980_04520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_04520 PF02142 MGS-like domain JW980_04525 PF00117 Glutamine amidotransferase class-I JW980_04525 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JW980_04540 PF01985 CRS1 / YhbY (CRM) domain JW980_04545 PF01728 FtsJ-like methyltransferase JW980_04550 PF01434 Peptidase family M41 JW980_04550 PF17862 AAA+ lid domain JW980_04550 PF06480 FtsH Extracellular JW980_04550 PF00004 ATPase family associated with various cellular activities (AAA) JW980_04555 PF00809 Pterin binding enzyme JW980_04575 PF09423 PhoD-like phosphatase JW980_04575 PF16655 PhoD-like phosphatase, N-terminal domain JW980_04595 PF03600 Citrate transporter JW980_04600 PF01595 Cyclin M transmembrane N-terminal domain JW980_04600 PF03471 Transporter associated domain JW980_04600 PF00571 CBS domain JW980_04605 PF03466 LysR substrate binding domain JW980_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_04610 PF00463 Isocitrate lyase family JW980_04615 PF01219 Prokaryotic diacylglycerol kinase JW980_04620 PF03009 Glycerophosphoryl diester phosphodiesterase family JW980_04625 PF00873 AcrB/AcrD/AcrF family JW980_04630 PF00571 CBS domain JW980_04630 PF01769 Divalent cation transporter JW980_04630 PF03448 MgtE intracellular N domain JW980_04645 PF01435 Peptidase family M48 JW980_04650 PF01464 Transglycosylase SLT domain JW980_04655 PF01171 PP-loop family JW980_04665 PF01464 Transglycosylase SLT domain JW980_04665 PF00497 Bacterial extracellular solute-binding proteins, family 3 JW980_04670 PF01272 Transcription elongation factor, GreA/GreB, C-term JW980_04670 PF03449 Transcription elongation factor, N-terminal JW980_04700 PF00440 Bacterial regulatory proteins, tetR family JW980_04700 PF16925 Tetracyclin repressor-like, C-terminal domain JW980_04705 PF08659 KR domain JW980_04705 PF16197 Ketoacyl-synthetase C-terminal extension JW980_04705 PF00109 Beta-ketoacyl synthase, N-terminal domain JW980_04705 PF14765 Polyketide synthase dehydratase JW980_04705 PF00550 Phosphopantetheine attachment site JW980_04705 PF00107 Zinc-binding dehydrogenase JW980_04705 PF08240 Alcohol dehydrogenase GroES-like domain JW980_04705 PF02801 Beta-ketoacyl synthase, C-terminal domain JW980_04705 PF00698 Acyl transferase domain JW980_04715 PF17954 Quercetinase C-terminal cupin domain JW980_04715 PF02678 Pirin JW980_04730 PF01208 Uroporphyrinogen decarboxylase (URO-D) JW980_04735 PF05675 Protein of unknown function (DUF817) JW980_04750 PF00990 Diguanylate cyclase, GGDEF domain JW980_04760 PF01227 GTP cyclohydrolase I JW980_04770 PF00106 short chain dehydrogenase JW980_04775 PF13193 AMP-binding enzyme C-terminal domain JW980_04775 PF00501 AMP-binding enzyme JW980_04785 PF17874 MalT-like TPR region JW980_04785 PF00196 Bacterial regulatory proteins, luxR family JW980_04790 PF00218 Indole-3-glycerol phosphate synthase JW980_04795 PF02885 Glycosyl transferase family, helical bundle domain JW980_04795 PF00591 Glycosyl transferase family, a/b domain JW980_04800 PF00117 Glutamine amidotransferase class-I JW980_04805 PF00120 Glutamine synthetase, catalytic domain JW980_04805 PF03951 Glutamine synthetase, beta-Grasp domain JW980_04815 PF04345 Chorismate lyase JW980_04820 PF01040 UbiA prenyltransferase family JW980_04860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JW980_04860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JW980_04865 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JW980_04865 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JW980_04870 PF01784 NIF3 (NGG1p interacting factor 3) JW980_04875 PF13180 PDZ domain JW980_04875 PF17820 PDZ domain JW980_04885 PF18073 Rubredoxin metal binding domain JW980_04890 PF01235 Sodium:alanine symporter family JW980_04895 PF00324 Amino acid permease JW980_04905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JW980_04905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JW980_04910 PF01678 Diaminopimelate epimerase JW980_04915 PF00589 Phage integrase family JW980_04915 PF02899 Phage integrase, N-terminal SAM-like domain JW980_04925 PF13302 Acetyltransferase (GNAT) domain JW980_04930 PF01037 Lrp/AsnC ligand binding domain JW980_04935 PF01810 LysE type translocator JW980_04940 PF01012 Electron transfer flavoprotein domain JW980_04945 PF01012 Electron transfer flavoprotein domain JW980_04945 PF00766 Electron transfer flavoprotein FAD-binding domain JW980_04955 PF00521 DNA gyrase/topoisomerase IV, subunit A JW980_04955 PF03989 DNA gyrase C-terminal domain, beta-propeller JW980_04975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_04985 PF00266 Aminotransferase class-V JW980_04990 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JW980_05005 PF00557 Metallopeptidase family M24 JW980_05010 PF00318 Ribosomal protein S2 JW980_05015 PF00889 Elongation factor TS JW980_05040 PF05036 Sporulation related domain JW980_05040 PF03330 Lytic transglycolase JW980_05045 PF13406 Transglycosylase SLT domain JW980_05055 PF14489 QueF-like protein JW980_05055 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JW980_05060 PF01061 ABC-2 type transporter JW980_05065 PF00005 ABC transporter JW980_05075 PF00994 Probable molybdopterin binding domain JW980_05075 PF03453 MoeA N-terminal region (domain I and II) JW980_05075 PF03454 MoeA C-terminal region (domain IV) JW980_05080 PF00994 Probable molybdopterin binding domain JW980_05080 PF01967 MoaC family JW980_05085 PF04055 Radical SAM superfamily JW980_05085 PF06463 Molybdenum Cofactor Synthesis C JW980_05090 PF00384 Molybdopterin oxidoreductase JW980_05095 PF02634 FdhD/NarQ family JW980_05100 PF03459 TOBE domain JW980_05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_05110 PF00528 Binding-protein-dependent transport system inner membrane component JW980_05115 PF00005 ABC transporter JW980_05115 PF03459 TOBE domain JW980_05125 PF13737 Transposase DDE domain JW980_05160 PF00464 Serine hydroxymethyltransferase JW980_05170 PF14760 Rnk N-terminus JW980_05170 PF01272 Transcription elongation factor, GreA/GreB, C-term JW980_05185 PF05816 Toxic anion resistance protein (TelA) JW980_05195 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_05195 PF13192 Thioredoxin domain JW980_05200 PF00037 4Fe-4S binding domain JW980_05205 PF01136 Peptidase family U32 JW980_05205 PF16325 Peptidase family U32 C-terminal domain JW980_05210 PF13411 MerR HTH family regulatory protein JW980_05260 PF00175 Oxidoreductase NAD-binding domain JW980_05260 PF00970 Oxidoreductase FAD-binding domain JW980_05265 PF01980 tRNA-methyltransferase O JW980_05265 PF18389 TrmO C-terminal domain JW980_05275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JW980_05275 PF00437 Type II/IV secretion system protein JW980_05285 PF00072 Response regulator receiver domain JW980_05285 PF00486 Transcriptional regulatory protein, C terminal JW980_05290 PF08521 Two-component sensor kinase N-terminal JW980_05290 PF00512 His Kinase A (phospho-acceptor) domain JW980_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_05300 PF00293 NUDIX domain JW980_05310 PF00912 Transglycosylase JW980_05310 PF00905 Penicillin binding protein transpeptidase domain JW980_05310 PF14814 Bifunctional transglycosylase second domain JW980_05315 PF01513 ATP-NAD kinase JW980_05320 PF07023 Protein of unknown function (DUF1315) JW980_05330 PF02885 Glycosyl transferase family, helical bundle domain JW980_05330 PF00591 Glycosyl transferase family, a/b domain JW980_05335 PF00375 Sodium:dicarboxylate symporter family JW980_05340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_05340 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_05340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_05345 PF01965 DJ-1/PfpI family JW980_05350 PF01817 Chorismate mutase type II JW980_05350 PF00800 Prephenate dehydratase JW980_05350 PF01842 ACT domain JW980_05355 PF00155 Aminotransferase class I and II JW980_05360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JW980_05380 PF03883 Peroxide stress protein YaaA JW980_05390 PF03441 FAD binding domain of DNA photolyase JW980_05390 PF00875 DNA photolyase JW980_05400 PF00860 Permease family JW980_05405 PF00962 Adenosine/AMP deaminase JW980_05415 PF01292 Prokaryotic cytochrome b561 JW980_05430 PF01351 Ribonuclease HII JW980_05435 PF02599 Global regulator protein family JW980_05440 PF00696 Amino acid kinase family JW980_05440 PF13840 ACT domain JW980_05440 PF01842 ACT domain JW980_05445 PF02272 DHHA1 domain JW980_05445 PF01411 tRNA synthetases class II (A) JW980_05445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JW980_05450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JW980_05450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JW980_05465 PF03591 AzlC protein JW980_05470 PF13404 AsnC-type helix-turn-helix domain JW980_05470 PF01037 Lrp/AsnC ligand binding domain JW980_05480 PF13393 Histidyl-tRNA synthetase JW980_05485 PF00709 Adenylosuccinate synthetase JW980_05500 PF00248 Aldo/keto reductase family JW980_05505 PF00027 Cyclic nucleotide-binding domain JW980_05505 PF13545 Crp-like helix-turn-helix domain JW980_05510 PF02566 OsmC-like protein JW980_05515 PF10431 C-terminal, D2-small domain, of ClpB protein JW980_05515 PF00004 ATPase family associated with various cellular activities (AAA) JW980_05515 PF07724 AAA domain (Cdc48 subfamily) JW980_05515 PF17871 AAA lid domain JW980_05515 PF02861 Clp amino terminal domain, pathogenicity island component JW980_05525 PF02926 THUMP domain JW980_05525 PF10672 S-adenosylmethionine-dependent methyltransferase JW980_05525 PF01170 Putative RNA methylase family UPF0020 JW980_05535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JW980_05535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JW980_05540 PF01979 Amidohydrolase family JW980_05555 PF02667 Short chain fatty acid transporter JW980_05560 PF01144 Coenzyme A transferase JW980_05565 PF01144 Coenzyme A transferase JW980_05570 PF00682 HMGL-like JW980_05575 PF18140 Propionyl-coenzyme A carboxylase BT domain JW980_05575 PF02785 Biotin carboxylase C-terminal domain JW980_05575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_05575 PF00364 Biotin-requiring enzyme JW980_05575 PF00289 Biotin carboxylase, N-terminal domain JW980_05580 PF00378 Enoyl-CoA hydratase/isomerase JW980_05585 PF01039 Carboxyl transferase domain JW980_05590 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_05590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_05590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_05595 PF17925 Tetracyclin repressor-like, C-terminal domain JW980_05595 PF00440 Bacterial regulatory proteins, tetR family JW980_05600 PF00501 AMP-binding enzyme JW980_05600 PF13193 AMP-binding enzyme C-terminal domain JW980_05605 PF06968 Biotin and Thiamin Synthesis associated domain JW980_05605 PF04055 Radical SAM superfamily JW980_05630 PF02390 Putative methyltransferase JW980_05640 PF00916 Sulfate permease family JW980_05640 PF01740 STAS domain JW980_05645 PF00043 Glutathione S-transferase, C-terminal domain JW980_05645 PF02798 Glutathione S-transferase, N-terminal domain JW980_05650 PF02525 Flavodoxin-like fold JW980_05665 PF05690 Thiazole biosynthesis protein ThiG JW980_05675 PF04241 Protein of unknown function (DUF423) JW980_05680 PF04545 Sigma-70, region 4 JW980_05680 PF04542 Sigma-70 region 2 JW980_05680 PF00140 Sigma-70 factor, region 1.2 JW980_05690 PF00313 'Cold-shock' DNA-binding domain JW980_05695 PF00271 Helicase conserved C-terminal domain JW980_05695 PF00270 DEAD/DEAH box helicase JW980_05705 PF00881 Nitroreductase family JW980_05710 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JW980_05710 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JW980_05730 PF01180 Dihydroorotate dehydrogenase JW980_05740 PF00156 Phosphoribosyl transferase domain JW980_05755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JW980_05755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JW980_05760 PF01435 Peptidase family M48 JW980_05765 PF09424 Yqey-like protein JW980_05770 PF01165 Ribosomal protein S21 JW980_05775 PF00814 Glycoprotease family JW980_05795 PF03793 PASTA domain JW980_05795 PF00069 Protein kinase domain JW980_05825 PF16123 Hydroxyacylglutathione hydrolase C-terminus JW980_05825 PF00753 Metallo-beta-lactamase superfamily JW980_05830 PF00578 AhpC/TSA family JW980_05830 PF10417 C-terminal domain of 1-Cys peroxiredoxin JW980_05835 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JW980_05835 PF00270 DEAD/DEAH box helicase JW980_05835 PF11898 Domain of unknown function (DUF3418) JW980_05835 PF00271 Helicase conserved C-terminal domain JW980_05835 PF04408 Helicase associated domain (HA2) JW980_05840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JW980_05840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JW980_05855 PF00005 ABC transporter JW980_05865 PF07690 Major Facilitator Superfamily JW980_05870 PF04324 BFD-like [2Fe-2S] binding domain JW980_05870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JW980_05870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JW980_05870 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_05870 PF18267 Rubredoxin NAD+ reductase C-terminal domain JW980_05875 PF18267 Rubredoxin NAD+ reductase C-terminal domain JW980_05875 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_05875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JW980_05875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JW980_05875 PF04324 BFD-like [2Fe-2S] binding domain JW980_05880 PF04324 BFD-like [2Fe-2S] binding domain JW980_05880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JW980_05880 PF00384 Molybdopterin oxidoreductase JW980_05880 PF01568 Molydopterin dinucleotide binding domain JW980_05885 PF12804 MobA-like NTP transferase domain JW980_05890 PF04055 Radical SAM superfamily JW980_05890 PF06463 Molybdenum Cofactor Synthesis C JW980_05900 PF02391 MoaE protein JW980_05905 PF01406 tRNA synthetases class I (C) catalytic domain JW980_05905 PF09190 DALR domain JW980_05920 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JW980_05925 PF02277 Phosphoribosyltransferase JW980_05930 PF00300 Histidine phosphatase superfamily (branch 1) JW980_05935 PF02654 Cobalamin-5-phosphate synthase JW980_05940 PF00571 CBS domain JW980_05940 PF01380 SIS domain JW980_05955 PF03968 OstA-like protein JW980_05960 PF00005 ABC transporter JW980_05960 PF12399 Branched-chain amino acid ATP-binding cassette transporter JW980_05965 PF01205 Uncharacterized protein family UPF0029 JW980_05970 PF12804 MobA-like NTP transferase domain JW980_05970 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_05970 PF14602 Hexapeptide repeat of succinyl-transferase JW980_05980 PF01596 O-methyltransferase JW980_05990 PF11953 Domain of unknown function (DUF3470) JW980_05990 PF00037 4Fe-4S binding domain JW980_05995 PF00488 MutS domain V JW980_05995 PF01624 MutS domain I JW980_05995 PF05188 MutS domain II JW980_05995 PF05192 MutS domain III JW980_05995 PF05190 MutS family domain IV JW980_06010 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_06015 PF00588 SpoU rRNA Methylase family JW980_06020 PF14579 Helix-hairpin-helix motif JW980_06020 PF02811 PHP domain JW980_06020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JW980_06020 PF01336 OB-fold nucleic acid binding domain JW980_06020 PF07733 Bacterial DNA polymerase III alpha NTPase domain JW980_06030 PF00528 Binding-protein-dependent transport system inner membrane component JW980_06035 PF00005 ABC transporter JW980_06035 PF09383 NIL domain JW980_06040 PF03180 NLPA lipoprotein JW980_06045 PF13737 Transposase DDE domain JW980_06065 PF02844 Phosphoribosylglycinamide synthetase, N domain JW980_06065 PF02843 Phosphoribosylglycinamide synthetase, C domain JW980_06065 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JW980_06070 PF01808 AICARFT/IMPCHase bienzyme JW980_06070 PF02142 MGS-like domain JW980_06075 PF02954 Bacterial regulatory protein, Fis family JW980_06105 PF01134 Glucose inhibited division protein A JW980_06105 PF13932 GidA associated domain JW980_06120 PF14403 Circularly permuted ATP-grasp type 2 JW980_06130 PF08379 Bacterial transglutaminase-like N-terminal region JW980_06130 PF01841 Transglutaminase-like superfamily JW980_06145 PF01168 Alanine racemase, N-terminal domain JW980_06145 PF00842 Alanine racemase, C-terminal domain JW980_06150 PF03796 DnaB-like helicase C terminal domain JW980_06150 PF00772 DnaB-like helicase N terminal domain JW980_06155 PF03948 Ribosomal protein L9, C-terminal domain JW980_06155 PF01281 Ribosomal protein L9, N-terminal domain JW980_06160 PF01084 Ribosomal protein S18 JW980_06165 PF01250 Ribosomal protein S6 JW980_06180 PF01040 UbiA prenyltransferase family JW980_06185 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JW980_06190 PF00510 Cytochrome c oxidase subunit III JW980_06195 PF00115 Cytochrome C and Quinol oxidase polypeptide I JW980_06200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JW980_06200 PF06481 COX Aromatic Rich Motif JW980_06210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JW980_06210 PF02896 PEP-utilising enzyme, TIM barrel domain JW980_06210 PF00391 PEP-utilising enzyme, mobile domain JW980_06215 PF03618 Kinase/pyrophosphorylase JW980_06230 PF00296 Luciferase-like monooxygenase JW980_06245 PF00472 RF-1 domain JW980_06245 PF03462 PCRF domain JW980_06250 PF13847 Methyltransferase domain JW980_06250 PF17827 PrmC N-terminal domain JW980_06255 PF00528 Binding-protein-dependent transport system inner membrane component JW980_06260 PF09084 NMT1/THI5 like JW980_06280 PF12833 Helix-turn-helix domain JW980_06280 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_06285 PF00106 short chain dehydrogenase JW980_06290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_06290 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_06290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_06295 PF13193 AMP-binding enzyme C-terminal domain JW980_06295 PF00501 AMP-binding enzyme JW980_06300 PF00899 ThiF family JW980_06305 PF03109 ABC1 family JW980_06310 PF02152 Dihydroneopterin aldolase JW980_06325 PF03232 Ubiquinone biosynthesis protein COQ7 JW980_06330 PF07690 Major Facilitator Superfamily JW980_06335 PF01103 Surface antigen JW980_06335 PF17243 POTRA domain TamA domain 1 JW980_06335 PF07244 Surface antigen variable number repeat JW980_06425 PF01381 Helix-turn-helix JW980_06425 PF00717 Peptidase S24-like JW980_06490 PF05866 Endodeoxyribonuclease RusA JW980_06550 PF04860 Phage portal protein JW980_06590 PF08346 AntA/AntB antirepressor JW980_06590 PF10548 P22AR C-terminal domain JW980_06675 PF00182 Chitinase class I JW980_06700 PF00330 Aconitase family (aconitate hydratase) JW980_06700 PF06434 Aconitate hydratase 2 N-terminus JW980_06700 PF11791 Aconitate B N-terminal domain JW980_06725 PF00665 Integrase core domain JW980_06725 PF02796 Helix-turn-helix domain of resolvase JW980_06730 PF01695 IstB-like ATP binding protein JW980_06740 PF03616 Sodium/glutamate symporter JW980_06745 PF01037 Lrp/AsnC ligand binding domain JW980_06750 PF00324 Amino acid permease JW980_06770 PF05525 Branched-chain amino acid transport protein JW980_06775 PF00557 Metallopeptidase family M24 JW980_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_06780 PF03466 LysR substrate binding domain JW980_06785 PF04607 Region found in RelA / SpoT proteins JW980_06785 PF02824 TGS domain JW980_06785 PF13291 ACT domain JW980_06795 PF02954 Bacterial regulatory protein, Fis family JW980_06795 PF00158 Sigma-54 interaction domain JW980_06795 PF00072 Response regulator receiver domain JW980_06800 PF00512 His Kinase A (phospho-acceptor) domain JW980_06800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_06800 PF00989 PAS fold JW980_06805 PF04055 Radical SAM superfamily JW980_06805 PF00919 Uncharacterized protein family UPF0004 JW980_06805 PF18693 TRAM domain JW980_06810 PF00696 Amino acid kinase family JW980_06815 PF01765 Ribosome recycling factor JW980_06820 PF01255 Putative undecaprenyl diphosphate synthase JW980_06830 PF13288 DXP reductoisomerase C-terminal domain JW980_06830 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JW980_06830 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JW980_06835 PF02163 Peptidase family M50 JW980_06835 PF17820 PDZ domain JW980_06835 PF13180 PDZ domain JW980_06840 PF07244 Surface antigen variable number repeat JW980_06840 PF01103 Surface antigen JW980_06850 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JW980_06850 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_06855 PF07977 FabA-like domain JW980_06860 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JW980_06860 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_06885 PF02631 RecX family JW980_06890 PF00154 recA bacterial DNA recombination protein JW980_06895 PF01479 S4 domain JW980_06900 PF13419 Haloacid dehalogenase-like hydrolase JW980_06915 PF00459 Inositol monophosphatase family JW980_06930 PF00041 Fibronectin type III domain JW980_06930 PF12561 ToxR activated gene A lipoprotein domain JW980_06935 PF01649 Ribosomal protein S20 JW980_06940 PF13460 NAD(P)H-binding JW980_06945 PF03737 Aldolase/RraA JW980_06965 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_06965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_06980 PF07690 Major Facilitator Superfamily JW980_06985 PF00248 Aldo/keto reductase family JW980_06990 PF03466 LysR substrate binding domain JW980_06990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_07000 PF00117 Glutamine amidotransferase class-I JW980_07000 PF06418 CTP synthase N-terminus JW980_07005 PF00793 DAHP synthetase I family JW980_07010 PF03952 Enolase, N-terminal domain JW980_07010 PF00113 Enolase, C-terminal TIM barrel domain JW980_07015 PF04977 Septum formation initiator JW980_07020 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JW980_07025 PF01098 Cell cycle protein JW980_07055 PF06039 Malate:quinone oxidoreductase (Mqo) JW980_07060 PF05199 GMC oxidoreductase JW980_07060 PF00732 GMC oxidoreductase JW980_07065 PF00171 Aldehyde dehydrogenase family JW980_07070 PF13977 BetI-type transcriptional repressor, C-terminal JW980_07070 PF00440 Bacterial regulatory proteins, tetR family JW980_07075 PF02028 BCCT, betaine/carnitine/choline family transporter JW980_07090 PF08173 Membrane bound YbgT-like protein JW980_07095 PF02322 Cytochrome bd terminal oxidase subunit II JW980_07100 PF01654 Cytochrome bd terminal oxidase subunit I JW980_07110 PF07290 Protein of unknown function (DUF1449) JW980_07120 PF00294 pfkB family carbohydrate kinase JW980_07130 PF05193 Peptidase M16 inactive domain JW980_07130 PF00675 Insulinase (Peptidase family M16) JW980_07130 PF08367 Peptidase M16C associated JW980_07135 PF02253 Phospholipase A1 JW980_07140 PF02386 Cation transport protein JW980_07145 PF02254 TrkA-N domain JW980_07145 PF02080 TrkA-C domain JW980_07155 PF00291 Pyridoxal-phosphate dependent enzyme JW980_07155 PF00585 C-terminal regulatory domain of Threonine dehydratase JW980_07160 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JW980_07175 PF02774 Semialdehyde dehydrogenase, dimerisation domain JW980_07175 PF01118 Semialdehyde dehydrogenase, NAD binding domain JW980_07185 PF02617 ATP-dependent Clp protease adaptor protein ClpS JW980_07190 PF00004 ATPase family associated with various cellular activities (AAA) JW980_07190 PF10431 C-terminal, D2-small domain, of ClpB protein JW980_07190 PF02861 Clp amino terminal domain, pathogenicity island component JW980_07190 PF17871 AAA lid domain JW980_07190 PF07724 AAA domain (Cdc48 subfamily) JW980_07195 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JW980_07205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JW980_07205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JW980_07210 PF00440 Bacterial regulatory proteins, tetR family JW980_07220 PF00285 Citrate synthase, C-terminal domain JW980_07230 PF00756 Putative esterase JW980_07235 PF00501 AMP-binding enzyme JW980_07235 PF13193 AMP-binding enzyme C-terminal domain JW980_07245 PF06968 Biotin and Thiamin Synthesis associated domain JW980_07245 PF04055 Radical SAM superfamily JW980_07250 PF08331 Domain of unknown function (DUF1730) JW980_07255 PF01256 Carbohydrate kinase JW980_07255 PF03853 YjeF-related protein N-terminus JW980_07260 PF00708 Acylphosphatase JW980_07265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_07270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_07275 PF07943 Penicillin-binding protein 5, C-terminal domain JW980_07275 PF00768 D-alanyl-D-alanine carboxypeptidase JW980_07285 PF00576 HIUase/Transthyretin family JW980_07290 PF03971 Monomeric isocitrate dehydrogenase JW980_07305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_07310 PF00005 ABC transporter JW980_07325 PF00849 RNA pseudouridylate synthase JW980_07330 PF00176 SNF2 family N-terminal domain JW980_07330 PF12137 RNA polymerase recycling family C-terminal JW980_07330 PF18339 RapA N-terminal Tudor like domain 1 JW980_07330 PF00271 Helicase conserved C-terminal domain JW980_07330 PF18337 RapA N-terminal Tudor like domain JW980_07345 PF00440 Bacterial regulatory proteins, tetR family JW980_07350 PF00175 Oxidoreductase NAD-binding domain JW980_07350 PF00970 Oxidoreductase FAD-binding domain JW980_07350 PF00111 2Fe-2S iron-sulfur cluster binding domain JW980_07355 PF00487 Fatty acid desaturase JW980_07370 PF07759 Protein of unknown function (DUF1615) JW980_07385 PF00313 'Cold-shock' DNA-binding domain JW980_07410 PF00313 'Cold-shock' DNA-binding domain JW980_07430 PF01695 IstB-like ATP binding protein JW980_07435 PF02796 Helix-turn-helix domain of resolvase JW980_07435 PF00665 Integrase core domain JW980_07450 PF00593 TonB dependent receptor JW980_07450 PF07660 Secretin and TonB N terminus short domain JW980_07450 PF07715 TonB-dependent Receptor Plug Domain JW980_07460 PF13737 Transposase DDE domain JW980_07465 PF03976 Polyphosphate kinase 2 (PPK2) JW980_07490 PF01545 Cation efflux family JW980_07510 PF00529 HlyD membrane-fusion protein of T1SS JW980_07510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_07515 PF00873 AcrB/AcrD/AcrF family JW980_07535 PF07690 Major Facilitator Superfamily JW980_07540 PF09335 SNARE associated Golgi protein JW980_07550 PF13700 Domain of unknown function (DUF4158) JW980_07550 PF01526 Tn3 transposase DDE domain JW980_07580 PF00665 Integrase core domain JW980_07580 PF13936 Helix-turn-helix domain JW980_07590 PF02321 Outer membrane efflux protein JW980_07595 PF13533 Biotin-lipoyl like JW980_07600 PF00005 ABC transporter JW980_07615 PF02253 Phospholipase A1 JW980_07625 PF07660 Secretin and TonB N terminus short domain JW980_07625 PF00593 TonB dependent receptor JW980_07625 PF07715 TonB-dependent Receptor Plug Domain JW980_07650 PF01207 Dihydrouridine synthase (Dus) JW980_07655 PF03060 Nitronate monooxygenase JW980_07680 PF13192 Thioredoxin domain JW980_07680 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_07700 PF00155 Aminotransferase class I and II JW980_07705 PF01641 SelR domain JW980_07710 PF00255 Glutathione peroxidase JW980_07725 PF07715 TonB-dependent Receptor Plug Domain JW980_07725 PF00593 TonB dependent receptor JW980_07730 PF00155 Aminotransferase class I and II JW980_07735 PF08335 GlnD PII-uridylyltransferase JW980_07735 PF01966 HD domain JW980_07735 PF01909 Nucleotidyltransferase domain JW980_07740 PF02222 ATP-grasp domain JW980_07745 PF05437 Branched-chain amino acid transport protein (AzlD) JW980_07750 PF03591 AzlC protein JW980_07760 PF00027 Cyclic nucleotide-binding domain JW980_07760 PF13545 Crp-like helix-turn-helix domain JW980_07775 PF06071 Protein of unknown function (DUF933) JW980_07775 PF01926 50S ribosome-binding GTPase JW980_07785 PF00528 Binding-protein-dependent transport system inner membrane component JW980_07790 PF00005 ABC transporter JW980_07790 PF09383 NIL domain JW980_07795 PF03180 NLPA lipoprotein JW980_07800 PF03180 NLPA lipoprotein JW980_07805 PF00296 Luciferase-like monooxygenase JW980_07810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_07810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JW980_07815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_07815 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JW980_07830 PF01709 Transcriptional regulator JW980_07840 PF01553 Acyltransferase JW980_07855 PF18644 Phage integrase SAM-like domain JW980_07855 PF00589 Phage integrase family JW980_07935 PF02542 YgbB family JW980_07945 PF00793 DAHP synthetase I family JW980_07950 PF01925 Sulfite exporter TauE/SafE JW980_07970 PF02684 Lipid-A-disaccharide synthetase JW980_07975 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JW980_07975 PF18381 YcaO cyclodehydratase C-terminal domain JW980_07980 PF12833 Helix-turn-helix domain JW980_07980 PF12852 Cupin JW980_07985 PF00487 Fatty acid desaturase JW980_07990 PF04073 Aminoacyl-tRNA editing domain JW980_07995 PF04183 IucA / IucC family JW980_07995 PF06276 Ferric iron reductase FhuF-like transporter JW980_08000 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JW980_08005 PF06276 Ferric iron reductase FhuF-like transporter JW980_08005 PF04183 IucA / IucC family JW980_08020 PF07690 Major Facilitator Superfamily JW980_08025 PF07715 TonB-dependent Receptor Plug Domain JW980_08025 PF00593 TonB dependent receptor JW980_08035 PF04172 LrgB-like family JW980_08040 PF03788 LrgA family JW980_08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_08045 PF03466 LysR substrate binding domain JW980_08050 PF13419 Haloacid dehalogenase-like hydrolase JW980_08055 PF01638 HxlR-like helix-turn-helix JW980_08075 PF02635 DsrE/DsrF-like family JW980_08080 PF00589 Phage integrase family JW980_08155 PF00717 Peptidase S24-like JW980_08155 PF01381 Helix-turn-helix JW980_08240 PF06381 Protein of unknown function (DUF1073) JW980_08245 PF04233 Phage Mu protein F like protein JW980_08365 PF00959 Phage lysozyme JW980_08380 PF16363 GDP-mannose 4,6 dehydratase JW980_08385 PF00206 Lyase JW980_08385 PF10415 Fumarase C C-terminus JW980_08425 PF00106 short chain dehydrogenase JW980_08430 PF06865 Pyrimidine/purine nucleoside phosphorylase JW980_08465 PF03707 Bacterial signalling protein N terminal repeat JW980_08465 PF00563 EAL domain JW980_08465 PF00990 Diguanylate cyclase, GGDEF domain JW980_08470 PF00793 DAHP synthetase I family JW980_08475 PF00437 Type II/IV secretion system protein JW980_08485 PF01597 Glycine cleavage H-protein JW980_08490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_08490 PF12833 Helix-turn-helix domain JW980_08495 PF00005 ABC transporter JW980_08495 PF00664 ABC transporter transmembrane region JW980_08505 PF00924 Mechanosensitive ion channel JW980_08510 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JW980_08520 PF00375 Sodium:dicarboxylate symporter family JW980_08525 PF01740 STAS domain JW980_08525 PF00916 Sulfate permease family JW980_08535 PF12697 Alpha/beta hydrolase family JW980_08540 PF00296 Luciferase-like monooxygenase JW980_08545 PF00857 Isochorismatase family JW980_08550 PF01042 Endoribonuclease L-PSP JW980_08555 PF01613 Flavin reductase like domain JW980_08560 PF00860 Permease family JW980_08565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JW980_08565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JW980_08570 PF00291 Pyridoxal-phosphate dependent enzyme JW980_08575 PF08360 QacR-like protein, C-terminal region JW980_08575 PF00440 Bacterial regulatory proteins, tetR family JW980_08580 PF00108 Thiolase, N-terminal domain JW980_08580 PF02803 Thiolase, C-terminal domain JW980_08585 PF03466 LysR substrate binding domain JW980_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_08600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_08600 PF00289 Biotin carboxylase, N-terminal domain JW980_08600 PF02785 Biotin carboxylase C-terminal domain JW980_08610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_08610 PF00289 Biotin carboxylase, N-terminal domain JW980_08610 PF02785 Biotin carboxylase C-terminal domain JW980_08615 PF00364 Biotin-requiring enzyme JW980_08620 PF01220 Dehydroquinase class II JW980_08635 PF02426 Muconolactone delta-isomerase JW980_08640 PF13378 Enolase C-terminal domain-like JW980_08640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JW980_08650 PF07690 Major Facilitator Superfamily JW980_08670 PF00106 short chain dehydrogenase JW980_08675 PF01545 Cation efflux family JW980_08690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_08690 PF00529 HlyD membrane-fusion protein of T1SS JW980_08695 PF00873 AcrB/AcrD/AcrF family JW980_08705 PF07715 TonB-dependent Receptor Plug Domain JW980_08705 PF00593 TonB dependent receptor JW980_08710 PF00593 TonB dependent receptor JW980_08710 PF07715 TonB-dependent Receptor Plug Domain JW980_08715 PF00106 short chain dehydrogenase JW980_08720 PF17763 Glutaminase/Asparaginase C-terminal domain JW980_08720 PF00710 Asparaginase, N-terminal JW980_08745 PF04055 Radical SAM superfamily JW980_08750 PF00676 Dehydrogenase E1 component JW980_08755 PF02779 Transketolase, pyrimidine binding domain JW980_08755 PF02780 Transketolase, C-terminal domain JW980_08760 PF00364 Biotin-requiring enzyme JW980_08760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JW980_08760 PF02817 e3 binding domain JW980_08765 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_08765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_08775 PF00107 Zinc-binding dehydrogenase JW980_08775 PF08240 Alcohol dehydrogenase GroES-like domain JW980_08780 PF09905 DNA-binding protein VF530 JW980_09105 PF05736 OprF membrane domain JW980_09105 PF00691 OmpA family JW980_09115 PF14331 ImcF-related N-terminal domain JW980_09115 PF06744 Type VI secretion protein IcmF C-terminal JW980_09115 PF06761 Intracellular multiplication and human macrophage-killing JW980_09155 PF12697 Alpha/beta hydrolase family JW980_09160 PF00753 Metallo-beta-lactamase superfamily JW980_09170 PF04143 Sulphur transport JW980_09200 PF00005 ABC transporter JW980_09215 PF00893 Small Multidrug Resistance protein JW980_09225 PF08753 NikR C terminal nickel binding domain JW980_09225 PF01402 Ribbon-helix-helix protein, copG family JW980_09235 PF15887 Putative zinc-binding metallo-peptidase JW980_09235 PF10005 zinc-ribbon domain JW980_09250 PF12832 MFS_1 like family JW980_09255 PF01425 Amidase JW980_09260 PF00990 Diguanylate cyclase, GGDEF domain JW980_09270 PF01266 FAD dependent oxidoreductase JW980_09280 PF01264 Chorismate synthase JW980_09285 PF05175 Methyltransferase small domain JW980_09300 PF03109 ABC1 family JW980_09305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_09305 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_09305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_09310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_09310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_09310 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_09360 PF00448 SRP54-type protein, GTPase domain JW980_09360 PF02881 SRP54-type protein, helical bundle domain JW980_09365 PF05193 Peptidase M16 inactive domain JW980_09365 PF00675 Insulinase (Peptidase family M16) JW980_09390 PF00571 CBS domain JW980_09395 PF00291 Pyridoxal-phosphate dependent enzyme JW980_09405 PF00004 ATPase family associated with various cellular activities (AAA) JW980_09405 PF01434 Peptidase family M41 JW980_09405 PF17862 AAA+ lid domain JW980_09415 PF05166 YcgL domain JW980_09420 PF00570 HRDC domain JW980_09420 PF01612 3'-5' exonuclease JW980_09425 PF13662 Toprim domain JW980_09425 PF02132 RecR protein JW980_09430 PF02575 YbaB/EbfC DNA-binding family JW980_09435 PF01053 Cys/Met metabolism PLP-dependent enzyme JW980_09450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JW980_09450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JW980_09455 PF13737 Transposase DDE domain JW980_09465 PF01230 HIT domain JW980_09470 PF00267 Gram-negative porin JW980_09495 PF00216 Bacterial DNA-binding protein JW980_09510 PF02082 Transcriptional regulator JW980_09515 PF00266 Aminotransferase class-V JW980_09520 PF01592 NifU-like N terminal domain JW980_09525 PF01521 Iron-sulphur cluster biosynthesis JW980_09530 PF07743 HSCB C-terminal oligomerisation domain JW980_09530 PF00226 DnaJ domain JW980_09535 PF00012 Hsp70 protein JW980_09540 PF00111 2Fe-2S iron-sulfur cluster binding domain JW980_09545 PF00211 Adenylate and Guanylate cyclase catalytic domain JW980_09555 PF02559 CarD-like/TRCF domain JW980_09555 PF00270 DEAD/DEAH box helicase JW980_09555 PF00271 Helicase conserved C-terminal domain JW980_09555 PF17757 UvrB interaction domain JW980_09555 PF03461 TRCF domain JW980_09565 PF00474 Sodium:solute symporter family JW980_09570 PF01037 Lrp/AsnC ligand binding domain JW980_09575 PF00171 Aldehyde dehydrogenase family JW980_09575 PF01619 Proline dehydrogenase JW980_09575 PF14850 DNA-binding domain of Proline dehydrogenase JW980_09575 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JW980_09580 PF05958 tRNA (Uracil-5-)-methyltransferase JW980_09605 PF01062 Bestrophin, RFP-TM, chloride channel JW980_09610 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JW980_09610 PF00749 tRNA synthetases class I (E and Q), catalytic domain JW980_09615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JW980_09620 PF00149 Calcineurin-like phosphoesterase JW980_09635 PF00881 Nitroreductase family JW980_09645 PF01116 Fructose-bisphosphate aldolase class-II JW980_09655 PF00162 Phosphoglycerate kinase JW980_09665 PF02545 Maf-like protein JW980_09675 PF08007 Cupin superfamily protein JW980_09680 PF07730 Histidine kinase JW980_09685 PF00072 Response regulator receiver domain JW980_09685 PF00196 Bacterial regulatory proteins, luxR family JW980_09690 PF01645 Conserved region in glutamate synthase JW980_09705 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JW980_09705 PF01565 FAD binding domain JW980_09710 PF01451 Low molecular weight phosphotyrosine protein phosphatase JW980_09715 PF00465 Iron-containing alcohol dehydrogenase JW980_09720 PF03061 Thioesterase superfamily JW980_09725 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JW980_09725 PF12169 DNA polymerase III subunits gamma and tau domain III JW980_09725 PF12170 DNA polymerase III tau subunit V interacting with alpha JW980_09750 PF00108 Thiolase, N-terminal domain JW980_09750 PF02803 Thiolase, C-terminal domain JW980_09780 PF01381 Helix-turn-helix JW980_09800 PF03466 LysR substrate binding domain JW980_09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_09805 PF00923 Transaldolase/Fructose-6-phosphate aldolase JW980_09805 PF13202 EF hand JW980_09810 PF01810 LysE type translocator JW980_09815 PF03594 Benzoate membrane transport protein JW980_09820 PF00440 Bacterial regulatory proteins, tetR family JW980_09825 PF00893 Small Multidrug Resistance protein JW980_09830 PF00135 Carboxylesterase family JW980_09840 PF00582 Universal stress protein family JW980_09850 PF01433 Peptidase family M1 domain JW980_09850 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JW980_09850 PF11940 Domain of unknown function (DUF3458) Ig-like fold JW980_09865 PF02110 Hydroxyethylthiazole kinase family JW980_09875 PF03741 Integral membrane protein TerC family JW980_09875 PF03471 Transporter associated domain JW980_09895 PF01274 Malate synthase JW980_09900 PF03969 AFG1-like ATPase JW980_09910 PF00743 Flavin-binding monooxygenase-like JW980_09915 PF03956 Lysine exporter LysO JW980_09920 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JW980_09930 PF00216 Bacterial DNA-binding protein JW980_09935 PF00575 S1 RNA binding domain JW980_09940 PF02224 Cytidylate kinase JW980_09950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JW980_09960 PF03167 Uracil DNA glycosylase superfamily JW980_09970 PF03934 Type II secretion system (T2SS), protein K JW980_09975 PF07963 Prokaryotic N-terminal methylation motif JW980_09975 PF11612 Type II secretion system (T2SS), protein J JW980_09980 PF07963 Prokaryotic N-terminal methylation motif JW980_09980 PF02501 Type II secretion system (T2SS), protein I JW980_09995 PF01026 TatD related DNase JW980_10005 PF09115 DNA polymerase III, delta subunit, C terminal JW980_10010 PF02348 Cytidylyltransferase JW980_10015 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JW980_10020 PF00005 ABC transporter JW980_10020 PF00664 ABC transporter transmembrane region JW980_10030 PF01618 MotA/TolQ/ExbB proton channel family JW980_10035 PF17762 HTH domain found in ParB protein JW980_10035 PF02195 ParB-like nuclease domain JW980_10040 PF13614 AAA domain JW980_10045 PF02527 rRNA small subunit methyltransferase G JW980_10050 PF00483 Nucleotidyl transferase JW980_10055 PF01636 Phosphotransferase enzyme family JW980_10060 PF04453 LPS transport system D JW980_10060 PF03968 OstA-like protein JW980_10065 PF09312 SurA N-terminal domain JW980_10065 PF00639 PPIC-type PPIASE domain JW980_10070 PF17209 Hfq protein JW980_10080 PF01119 DNA mismatch repair protein, C-terminal domain JW980_10080 PF08676 MutL C terminal dimerisation domain JW980_10085 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JW980_10090 PF01479 S4 domain JW980_10090 PF00849 RNA pseudouridylate synthase JW980_10105 PF00849 RNA pseudouridylate synthase JW980_10105 PF01479 S4 domain JW980_10110 PF04284 Protein of unknown function (DUF441) JW980_10115 PF07690 Major Facilitator Superfamily JW980_10120 PF00520 Ion transport protein JW980_10120 PF00027 Cyclic nucleotide-binding domain JW980_10125 PF05970 PIF1-like helicase JW980_10125 PF14493 Helix-turn-helix domain JW980_10135 PF00465 Iron-containing alcohol dehydrogenase JW980_10150 PF00171 Aldehyde dehydrogenase family JW980_10155 PF13520 Amino acid permease JW980_10160 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JW980_10165 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JW980_10170 PF01323 DSBA-like thioredoxin domain JW980_10175 PF00106 short chain dehydrogenase JW980_10185 PF00117 Glutamine amidotransferase class-I JW980_10185 PF02540 NAD synthase JW980_10185 PF00958 GMP synthase C terminal domain JW980_10190 PF04264 YceI-like domain JW980_10195 PF00583 Acetyltransferase (GNAT) family JW980_10205 PF02779 Transketolase, pyrimidine binding domain JW980_10205 PF02780 Transketolase, C-terminal domain JW980_10205 PF00456 Transketolase, thiamine diphosphate binding domain JW980_10210 PF00438 S-adenosylmethionine synthetase, N-terminal domain JW980_10210 PF02772 S-adenosylmethionine synthetase, central domain JW980_10210 PF02773 S-adenosylmethionine synthetase, C-terminal domain JW980_10225 PF01810 LysE type translocator JW980_10235 PF02075 Crossover junction endodeoxyribonuclease RuvC JW980_10250 PF00202 Aminotransferase class-III JW980_10255 PF02581 Thiamine monophosphate synthase JW980_10290 PF00675 Insulinase (Peptidase family M16) JW980_10290 PF05193 Peptidase M16 inactive domain JW980_10295 PF02567 Phenazine biosynthesis-like protein JW980_10300 PF00375 Sodium:dicarboxylate symporter family JW980_10305 PF01613 Flavin reductase like domain JW980_10325 PF00180 Isocitrate/isopropylmalate dehydrogenase JW980_10330 PF00849 RNA pseudouridylate synthase JW980_10335 PF13737 Transposase DDE domain JW980_10355 PF00589 Phage integrase family JW980_10365 PF01841 Transglutaminase-like superfamily JW980_10365 PF13559 Domain of unknown function (DUF4129) JW980_10365 PF11992 Domain of unknown function (DUF3488) JW980_10375 PF07726 ATPase family associated with various cellular activities (AAA) JW980_10375 PF17863 AAA lid domain JW980_10380 PF02558 Ketopantoate reductase PanE/ApbA JW980_10380 PF08546 Ketopantoate reductase PanE/ApbA C terminal JW980_10385 PF04328 Selenoprotein, putative JW980_10390 PF02554 Carbon starvation protein CstA JW980_10390 PF13722 5TM C-terminal transporter carbon starvation CstA JW980_10395 PF09285 Elongation factor P, C-terminal JW980_10395 PF01132 Elongation factor P (EF-P) OB domain JW980_10395 PF08207 Elongation factor P (EF-P) KOW-like domain JW980_10400 PF04055 Radical SAM superfamily JW980_10420 PF01197 Ribosomal protein L31 JW980_10425 PF13593 SBF-like CPA transporter family (DUF4137) JW980_10430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JW980_10435 PF07690 Major Facilitator Superfamily JW980_10440 PF13654 AAA domain JW980_10440 PF05362 Lon protease (S16) C-terminal proteolytic domain JW980_10445 PF00462 Glutaredoxin JW980_10450 PF00202 Aminotransferase class-III JW980_10455 PF08496 Peptidase family S49 N-terminal JW980_10455 PF01343 Peptidase family S49 JW980_10460 PF00005 ABC transporter JW980_10465 PF00528 Binding-protein-dependent transport system inner membrane component JW980_10470 PF00528 Binding-protein-dependent transport system inner membrane component JW980_10475 PF12849 PBP superfamily domain JW980_10480 PF00282 Pyridoxal-dependent decarboxylase conserved domain JW980_10485 PF00202 Aminotransferase class-III JW980_10495 PF07715 TonB-dependent Receptor Plug Domain JW980_10495 PF00593 TonB dependent receptor JW980_10495 PF07660 Secretin and TonB N terminus short domain JW980_10500 PF01569 PAP2 superfamily JW980_10505 PF00696 Amino acid kinase family JW980_10505 PF01472 PUA domain JW980_10510 PF01926 50S ribosome-binding GTPase JW980_10510 PF01018 GTP1/OBG JW980_10515 PF01638 HxlR-like helix-turn-helix JW980_10520 PF05368 NmrA-like family JW980_10540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JW980_10540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JW980_10545 PF00892 EamA-like transporter family JW980_10555 PF12344 Ultra-violet resistance protein B JW980_10555 PF17757 UvrB interaction domain JW980_10555 PF04851 Type III restriction enzyme, res subunit JW980_10555 PF00271 Helicase conserved C-terminal domain JW980_10555 PF02151 UvrB/uvrC motif JW980_10575 PF00155 Aminotransferase class I and II JW980_10580 PF00892 EamA-like transporter family JW980_10605 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JW980_10610 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JW980_10615 PF11967 Recombination protein O N terminal JW980_10615 PF02565 Recombination protein O C terminal JW980_10625 PF01926 50S ribosome-binding GTPase JW980_10625 PF07650 KH domain JW980_10630 PF00035 Double-stranded RNA binding motif JW980_10630 PF14622 Ribonuclease-III-like JW980_10640 PF10502 Signal peptidase, peptidase S26 JW980_10645 PF00009 Elongation factor Tu GTP binding domain JW980_10645 PF00679 Elongation factor G C-terminus JW980_10645 PF06421 GTP-binding protein LepA C-terminus JW980_10645 PF03144 Elongation factor Tu domain 2 JW980_10660 PF13180 PDZ domain JW980_10665 PF00890 FAD binding domain JW980_10665 PF02910 Fumarate reductase flavoprotein C-term JW980_10675 PF02223 Thymidylate kinase JW980_10680 PF02618 YceG-like family JW980_10700 PF00528 Binding-protein-dependent transport system inner membrane component JW980_10705 PF00528 Binding-protein-dependent transport system inner membrane component JW980_10710 PF12857 TOBE-like domain JW980_10710 PF00005 ABC transporter JW980_10715 PF03466 LysR substrate binding domain JW980_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_10730 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_10730 PF14602 Hexapeptide repeat of succinyl-transferase JW980_10730 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JW980_10735 PF04055 Radical SAM superfamily JW980_10740 PF06508 Queuosine biosynthesis protein QueC JW980_10755 PF00578 AhpC/TSA family JW980_10760 PF01810 LysE type translocator JW980_10765 PF03466 LysR substrate binding domain JW980_10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_10770 PF04264 YceI-like domain JW980_10775 PF01467 Cytidylyltransferase-like JW980_10775 PF00293 NUDIX domain JW980_10780 PF00378 Enoyl-CoA hydratase/isomerase JW980_10785 PF00881 Nitroreductase family JW980_10790 PF01784 NIF3 (NGG1p interacting factor 3) JW980_10800 PF02769 AIR synthase related protein, C-terminal domain JW980_10800 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JW980_10800 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JW980_10805 PF01966 HD domain JW980_10810 PF07499 RuvA, C-terminal domain JW980_10810 PF01330 RuvA N terminal domain JW980_10815 PF05496 Holliday junction DNA helicase RuvB P-loop domain JW980_10815 PF05491 RuvB C-terminal winged helix domain JW980_10815 PF17864 RuvB AAA lid domain JW980_10820 PF03061 Thioesterase superfamily JW980_10825 PF01618 MotA/TolQ/ExbB proton channel family JW980_10830 PF02472 Biopolymer transport protein ExbD/TolR JW980_10840 PF04052 TolB amino-terminal domain JW980_10840 PF07676 WD40-like Beta Propeller Repeat JW980_10845 PF00691 OmpA family JW980_10855 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JW980_10860 PF00588 SpoU rRNA Methylase family JW980_10860 PF08032 RNA 2'-O ribose methyltransferase substrate binding JW980_10890 PF00665 Integrase core domain JW980_10890 PF02796 Helix-turn-helix domain of resolvase JW980_10895 PF01695 IstB-like ATP binding protein JW980_10905 PF00308 Bacterial dnaA protein JW980_10905 PF08299 Bacterial dnaA protein helix-turn-helix JW980_10905 PF11638 DnaA N-terminal domain JW980_10910 PF01594 AI-2E family transporter JW980_10915 PF00586 AIR synthase related protein, N-terminal domain JW980_10915 PF02769 AIR synthase related protein, C-terminal domain JW980_10920 PF00551 Formyl transferase JW980_10930 PF01343 Peptidase family S49 JW980_10930 PF06965 Na+/H+ antiporter 1 JW980_10940 PF13567 Domain of unknown function (DUF4131) JW980_10940 PF03772 Competence protein JW980_10940 PF00753 Metallo-beta-lactamase superfamily JW980_10945 PF00005 ABC transporter JW980_10950 PF12704 MacB-like periplasmic core domain JW980_10950 PF02687 FtsX-like permease family JW980_10965 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JW980_10980 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_10980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_10985 PF04055 Radical SAM superfamily JW980_10990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JW980_10990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JW980_10990 PF02770 Acyl-CoA dehydrogenase, middle domain JW980_10990 PF09317 Domain of unknown function (DUF1974) JW980_11035 PF05221 S-adenosyl-L-homocysteine hydrolase JW980_11035 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JW980_11040 PF02219 Methylenetetrahydrofolate reductase JW980_11045 PF04452 RNA methyltransferase JW980_11050 PF00563 EAL domain JW980_11050 PF00990 Diguanylate cyclase, GGDEF domain JW980_11050 PF00498 FHA domain JW980_11055 PF03949 Malic enzyme, NAD binding domain JW980_11055 PF00390 Malic enzyme, N-terminal domain JW980_11055 PF01515 Phosphate acetyl/butaryl transferase JW980_11060 PF01743 Poly A polymerase head domain JW980_11060 PF12627 Probable RNA and SrmB- binding site of polymerase A JW980_11065 PF00152 tRNA synthetases class II (D, K and N) JW980_11070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JW980_11070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JW980_11070 PF11890 Domain of unknown function (DUF3410) JW980_11085 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_11085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_11090 PF01565 FAD binding domain JW980_11090 PF09330 D-lactate dehydrogenase, membrane binding JW980_11095 PF01070 FMN-dependent dehydrogenase JW980_11100 PF07729 FCD domain JW980_11100 PF00392 Bacterial regulatory proteins, gntR family JW980_11105 PF02652 L-lactate permease JW980_11110 PF00764 Arginosuccinate synthase JW980_11115 PF00360 Phytochrome region JW980_11115 PF00990 Diguanylate cyclase, GGDEF domain JW980_11115 PF00563 EAL domain JW980_11115 PF01590 GAF domain JW980_11120 PF01979 Amidohydrolase family JW980_11125 PF00929 Exonuclease JW980_11150 PF00324 Amino acid permease JW980_11225 PF00589 Phage integrase family JW980_11230 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family JW980_11240 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_11240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_11245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JW980_11245 PF00005 ABC transporter JW980_11250 PF00528 Binding-protein-dependent transport system inner membrane component JW980_11250 PF12911 N-terminal TM domain of oligopeptide transport permease C JW980_11255 PF00528 Binding-protein-dependent transport system inner membrane component JW980_11260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JW980_11265 PF01476 LysM domain JW980_11265 PF01464 Transglycosylase SLT domain JW980_11270 PF00929 Exonuclease JW980_11280 PF09297 NADH pyrophosphatase zinc ribbon domain JW980_11280 PF00293 NUDIX domain JW980_11285 PF07859 alpha/beta hydrolase fold JW980_11290 PF04972 BON domain JW980_11295 PF02021 Uncharacterised protein family UPF0102 JW980_11300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JW980_11305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_11305 PF03466 LysR substrate binding domain JW980_11310 PF01476 LysM domain JW980_11310 PF01551 Peptidase family M23 JW980_11315 PF01975 Survival protein SurE JW980_11325 PF00199 Catalase JW980_11345 PF00768 D-alanyl-D-alanine carboxypeptidase JW980_11345 PF07943 Penicillin-binding protein 5, C-terminal domain JW980_11350 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_11360 PF00293 NUDIX domain JW980_11370 PF04356 Protein of unknown function (DUF489) JW980_11375 PF00206 Lyase JW980_11375 PF08328 Adenylosuccinate lyase C-terminal JW980_11390 PF01494 FAD binding domain JW980_11395 PF01494 FAD binding domain JW980_11405 PF13359 DDE superfamily endonuclease JW980_11405 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_11420 PF00557 Metallopeptidase family M24 JW980_11420 PF05195 Aminopeptidase P, N-terminal domain JW980_11425 PF03695 Uncharacterised protein family (UPF0149) JW980_11450 PF02472 Biopolymer transport protein ExbD/TolR JW980_11455 PF01618 MotA/TolQ/ExbB proton channel family JW980_11460 PF02333 Phytase JW980_11470 PF00990 Diguanylate cyclase, GGDEF domain JW980_11470 PF00072 Response regulator receiver domain JW980_11475 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_11475 PF12833 Helix-turn-helix domain JW980_11485 PF00245 Alkaline phosphatase JW980_11490 PF00245 Alkaline phosphatase JW980_11495 PF13737 Transposase DDE domain JW980_11500 PF00364 Biotin-requiring enzyme JW980_11500 PF02785 Biotin carboxylase C-terminal domain JW980_11500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JW980_11500 PF00289 Biotin carboxylase, N-terminal domain JW980_11510 PF07286 Protein of unknown function (DUF1445) JW980_11515 PF03746 LamB/YcsF family JW980_11520 PF01566 Natural resistance-associated macrophage protein JW980_11525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_11525 PF03466 LysR substrate binding domain JW980_11535 PF13411 MerR HTH family regulatory protein JW980_11540 PF01812 5-formyltetrahydrofolate cyclo-ligase family JW980_11545 PF02190 ATP-dependent protease La (LON) substrate-binding domain JW980_11545 PF00004 ATPase family associated with various cellular activities (AAA) JW980_11545 PF05362 Lon protease (S16) C-terminal proteolytic domain JW980_11555 PF04389 Peptidase family M28 JW980_11560 PF02590 Predicted SPOUT methyltransferase JW980_11565 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JW980_11575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JW980_11575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JW980_11580 PF04060 Putative Fe-S cluster JW980_11585 PF00633 Helix-hairpin-helix motif JW980_11585 PF10576 Iron-sulfur binding domain of endonuclease III JW980_11585 PF00730 HhH-GPD superfamily base excision DNA repair protein JW980_11595 PF05191 Adenylate kinase, active site lid JW980_11610 PF03717 Penicillin-binding Protein dimerisation domain JW980_11610 PF00905 Penicillin binding protein transpeptidase domain JW980_11630 PF01553 Acyltransferase JW980_11645 PF00118 TCP-1/cpn60 chaperonin family JW980_11650 PF00166 Chaperonin 10 Kd subunit JW980_11660 PF00781 Diacylglycerol kinase catalytic domain JW980_11665 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JW980_11665 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JW980_11675 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JW980_11675 PF01266 FAD dependent oxidoreductase JW980_11680 PF00083 Sugar (and other) transporter JW980_11695 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JW980_11695 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JW980_11720 PF14765 Polyketide synthase dehydratase JW980_11720 PF00698 Acyl transferase domain JW980_11720 PF00550 Phosphopantetheine attachment site JW980_11720 PF08659 KR domain JW980_11720 PF08240 Alcohol dehydrogenase GroES-like domain JW980_11735 PF03551 Transcriptional regulator PadR-like family JW980_11750 PF00009 Elongation factor Tu GTP binding domain JW980_11755 PF01507 Phosphoadenosine phosphosulfate reductase family JW980_11760 PF01336 OB-fold nucleic acid binding domain JW980_11760 PF00152 tRNA synthetases class II (D, K and N) JW980_11770 PF00156 Phosphoribosyl transferase domain JW980_11775 PF00301 Rubredoxin JW980_11780 PF18113 Rubredoxin binding C-terminal domain JW980_11780 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_11785 PF00561 alpha/beta hydrolase fold JW980_11790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_11790 PF03466 LysR substrate binding domain JW980_11795 PF13089 Polyphosphate kinase N-terminal domain JW980_11795 PF02503 Polyphosphate kinase middle domain JW980_11795 PF17941 Polyphosphate kinase C-terminal domain 1 JW980_11795 PF13090 Polyphosphate kinase C-terminal domain 2 JW980_11800 PF00912 Transglycosylase JW980_11805 PF01694 Rhomboid family JW980_11815 PF00005 ABC transporter JW980_11820 PF13472 GDSL-like Lipase/Acylhydrolase family JW980_11825 PF00484 Carbonic anhydrase JW980_11830 PF00561 alpha/beta hydrolase fold JW980_11840 PF00593 TonB dependent receptor JW980_11840 PF07715 TonB-dependent Receptor Plug Domain JW980_11845 PF01521 Iron-sulphur cluster biosynthesis JW980_11845 PF01106 NifU-like domain JW980_11865 PF01384 Phosphate transporter family JW980_11870 PF02607 B12 binding domain JW980_11870 PF02965 Vitamin B12 dependent methionine synthase, activation domain JW980_11870 PF00809 Pterin binding enzyme JW980_11870 PF02574 Homocysteine S-methyltransferase JW980_11870 PF02310 B12 binding domain JW980_11875 PF07690 Major Facilitator Superfamily JW980_11880 PF02311 AraC-like ligand binding domain JW980_11880 PF12833 Helix-turn-helix domain JW980_11885 PF01327 Polypeptide deformylase JW980_11890 PF08946 Osmosensory transporter coiled coil JW980_11890 PF00083 Sugar (and other) transporter JW980_11905 PF04973 Nicotinamide mononucleotide transporter JW980_11910 PF00378 Enoyl-CoA hydratase/isomerase JW980_11930 PF00583 Acetyltransferase (GNAT) family JW980_11940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_11945 PF07152 YaeQ protein JW980_11950 PF02492 CobW/HypB/UreG, nucleotide-binding domain JW980_11950 PF07683 Cobalamin synthesis protein cobW C-terminal domain JW980_11960 PF03061 Thioesterase superfamily JW980_11965 PF01734 Patatin-like phospholipase JW980_11970 PF02417 Chromate transporter JW980_11975 PF01235 Sodium:alanine symporter family JW980_11980 PF03616 Sodium/glutamate symporter JW980_11995 PF07690 Major Facilitator Superfamily JW980_12000 PF12805 FUSC-like inner membrane protein yccS JW980_12010 PF00175 Oxidoreductase NAD-binding domain JW980_12010 PF00258 Flavodoxin JW980_12010 PF00667 FAD binding domain JW980_12080 PF04304 Protein of unknown function (DUF454) JW980_12095 PF07687 Peptidase dimerisation domain JW980_12095 PF01546 Peptidase family M20/M25/M40 JW980_12105 PF01584 CheW-like domain JW980_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_12105 PF02895 Signal transducing histidine kinase, homodimeric domain JW980_12105 PF00072 Response regulator receiver domain JW980_12105 PF01627 Hpt domain JW980_12110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JW980_12110 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JW980_12115 PF01584 CheW-like domain JW980_12120 PF00072 Response regulator receiver domain JW980_12125 PF00072 Response regulator receiver domain JW980_12145 PF04073 Aminoacyl-tRNA editing domain JW980_12145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JW980_12145 PF03129 Anticodon binding domain JW980_12170 PF00692 dUTPase JW980_12180 PF16868 NMT1-like family JW980_12195 PF10609 NUBPL iron-transfer P-loop NTPase JW980_12220 PF09334 tRNA synthetases class I (M) JW980_12220 PF01588 Putative tRNA binding domain JW980_12230 PF13737 Transposase DDE domain JW980_12240 PF00753 Metallo-beta-lactamase superfamily JW980_12240 PF16123 Hydroxyacylglutathione hydrolase C-terminus JW980_12250 PF05643 Putative bacterial lipoprotein (DUF799) JW980_12260 PF03783 Curli production assembly/transport component CsgG JW980_12270 PF06100 MCRA family JW980_12295 PF13533 Biotin-lipoyl like JW980_12300 PF00291 Pyridoxal-phosphate dependent enzyme JW980_12320 PF05552 Conserved TM helix JW980_12335 PF00497 Bacterial extracellular solute-binding proteins, family 3 JW980_12340 PF00528 Binding-protein-dependent transport system inner membrane component JW980_12345 PF00528 Binding-protein-dependent transport system inner membrane component JW980_12350 PF00005 ABC transporter JW980_12355 PF00194 Eukaryotic-type carbonic anhydrase JW980_12360 PF00909 Ammonium Transporter Family JW980_12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_12375 PF00512 His Kinase A (phospho-acceptor) domain JW980_12375 PF08521 Two-component sensor kinase N-terminal JW980_12380 PF00486 Transcriptional regulatory protein, C terminal JW980_12380 PF00072 Response regulator receiver domain JW980_12385 PF00884 Sulfatase JW980_12385 PF08019 Phosphoethanolamine transferase EptA/EptB JW980_12405 PF01734 Patatin-like phospholipase JW980_12415 PF01145 SPFH domain / Band 7 family JW980_12420 PF00348 Polyprenyl synthetase JW980_12425 PF04303 PrpF protein JW980_12430 PF00324 Amino acid permease JW980_12435 PF13340 Putative transposase of IS4/5 family (DUF4096) JW980_12450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JW980_12455 PF00324 Amino acid permease JW980_12460 PF00155 Aminotransferase class I and II JW980_12475 PF02798 Glutathione S-transferase, N-terminal domain JW980_12475 PF14497 Glutathione S-transferase, C-terminal domain JW980_12490 PF03358 NADPH-dependent FMN reductase JW980_12495 PF01758 Sodium Bile acid symporter family JW980_12505 PF01022 Bacterial regulatory protein, arsR family JW980_12510 PF03960 ArsC family JW980_12515 PF05199 GMC oxidoreductase JW980_12520 PF00171 Aldehyde dehydrogenase family JW980_12525 PF12833 Helix-turn-helix domain JW980_12525 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_12550 PF01507 Phosphoadenosine phosphosulfate reductase family JW980_12555 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JW980_12555 PF06974 Protein of unknown function (DUF1298) JW980_12565 PF00575 S1 RNA binding domain JW980_12565 PF10150 Ribonuclease E/G family JW980_12570 PF02545 Maf-like protein JW980_12575 PF04093 rod shape-determining protein MreD JW980_12580 PF04085 rod shape-determining protein MreC JW980_12590 PF02686 Glu-tRNAGln amidotransferase C subunit JW980_12595 PF01425 Amidase JW980_12600 PF02934 GatB/GatE catalytic domain JW980_12600 PF02637 GatB domain JW980_12610 PF01965 DJ-1/PfpI family JW980_12630 PF05992 SbmA/BacA-like family JW980_12655 PF03466 LysR substrate binding domain JW980_12655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_12660 PF01144 Coenzyme A transferase JW980_12665 PF01144 Coenzyme A transferase JW980_12675 PF00593 TonB dependent receptor JW980_12675 PF07715 TonB-dependent Receptor Plug Domain JW980_12680 PF01011 PQQ enzyme repeat JW980_12680 PF13360 PQQ-like domain JW980_12685 PF13737 Transposase DDE domain JW980_12690 PF00171 Aldehyde dehydrogenase family JW980_12695 PF00202 Aminotransferase class-III JW980_12700 PF00155 Aminotransferase class I and II JW980_12700 PF00392 Bacterial regulatory proteins, gntR family JW980_12705 PF00324 Amino acid permease JW980_12715 PF00392 Bacterial regulatory proteins, gntR family JW980_12715 PF00155 Aminotransferase class I and II JW980_12725 PF04172 LrgB-like family JW980_12730 PF03788 LrgA family JW980_12745 PF01037 Lrp/AsnC ligand binding domain JW980_12760 PF16884 N-terminal domain of oxidoreductase JW980_12760 PF00107 Zinc-binding dehydrogenase JW980_12765 PF00440 Bacterial regulatory proteins, tetR family JW980_12765 PF16925 Tetracyclin repressor-like, C-terminal domain JW980_12775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JW980_12785 PF00465 Iron-containing alcohol dehydrogenase JW980_12795 PF00756 Putative esterase JW980_12800 PF08240 Alcohol dehydrogenase GroES-like domain JW980_12800 PF00107 Zinc-binding dehydrogenase JW980_12805 PF02583 Metal-sensitive transcriptional repressor JW980_12810 PF08659 KR domain JW980_12810 PF14765 Polyketide synthase dehydratase JW980_12810 PF02801 Beta-ketoacyl synthase, C-terminal domain JW980_12810 PF00109 Beta-ketoacyl synthase, N-terminal domain JW980_12810 PF16197 Ketoacyl-synthetase C-terminal extension JW980_12810 PF08240 Alcohol dehydrogenase GroES-like domain JW980_12810 PF00550 Phosphopantetheine attachment site JW980_12810 PF00698 Acyl transferase domain JW980_12815 PF00107 Zinc-binding dehydrogenase JW980_12815 PF08240 Alcohol dehydrogenase GroES-like domain JW980_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_12820 PF03466 LysR substrate binding domain JW980_12825 PF00106 short chain dehydrogenase JW980_12830 PF00107 Zinc-binding dehydrogenase JW980_12830 PF08240 Alcohol dehydrogenase GroES-like domain JW980_12900 PF00114 Pilin (bacterial filament) JW980_12900 PF07963 Prokaryotic N-terminal methylation motif JW980_12925 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_12925 PF13359 DDE superfamily endonuclease JW980_12940 PF00290 Tryptophan synthase alpha chain JW980_12945 PF00291 Pyridoxal-phosphate dependent enzyme JW980_12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_12950 PF03466 LysR substrate binding domain JW980_12970 PF00072 Response regulator receiver domain JW980_12970 PF00486 Transcriptional regulatory protein, C terminal JW980_12975 PF00512 His Kinase A (phospho-acceptor) domain JW980_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_12975 PF08521 Two-component sensor kinase N-terminal JW980_13015 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_13015 PF13359 DDE superfamily endonuclease JW980_13025 PF00313 'Cold-shock' DNA-binding domain JW980_13040 PF09297 NADH pyrophosphatase zinc ribbon domain JW980_13040 PF00293 NUDIX domain JW980_13045 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JW980_13060 PF00576 HIUase/Transthyretin family JW980_13070 PF13737 Transposase DDE domain JW980_13090 PF04239 Protein of unknown function (DUF421) JW980_13095 PF18011 C-terminal domain found in long catalases JW980_13095 PF00199 Catalase JW980_13095 PF06628 Catalase-related immune-responsive JW980_13110 PF00717 Peptidase S24-like JW980_13110 PF01726 LexA DNA binding domain JW980_13115 PF00817 impB/mucB/samB family JW980_13115 PF13438 Domain of unknown function (DUF4113) JW980_13115 PF11799 impB/mucB/samB family C-terminal domain JW980_13130 PF00857 Isochorismatase family JW980_13140 PF01695 IstB-like ATP binding protein JW980_13145 PF02796 Helix-turn-helix domain of resolvase JW980_13145 PF00665 Integrase core domain JW980_13155 PF01965 DJ-1/PfpI family JW980_13160 PF13737 Transposase DDE domain JW980_13165 PF13784 Fic/DOC family N-terminal JW980_13165 PF02661 Fic/DOC family JW980_13170 PF02661 Fic/DOC family JW980_13170 PF13784 Fic/DOC family N-terminal JW980_13175 PF00350 Dynamin family JW980_13230 PF02661 Fic/DOC family JW980_13230 PF13784 Fic/DOC family N-terminal JW980_13250 PF13520 Amino acid permease JW980_13260 PF12833 Helix-turn-helix domain JW980_13260 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JW980_13265 PF00202 Aminotransferase class-III JW980_13270 PF00589 Phage integrase family JW980_13270 PF13356 Arm DNA-binding domain JW980_13280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JW980_13280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JW980_13285 PF07690 Major Facilitator Superfamily JW980_13290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JW980_13290 PF00529 HlyD membrane-fusion protein of T1SS JW980_13295 PF03061 Thioesterase superfamily JW980_13300 PF00490 Delta-aminolevulinic acid dehydratase JW980_13305 PF01266 FAD dependent oxidoreductase JW980_13310 PF01370 NAD dependent epimerase/dehydratase family JW980_13310 PF08338 Domain of unknown function (DUF1731) JW980_13320 PF00360 Phytochrome region JW980_13320 PF01590 GAF domain JW980_13320 PF00563 EAL domain JW980_13320 PF00990 Diguanylate cyclase, GGDEF domain JW980_13325 PF00149 Calcineurin-like phosphoesterase JW980_13325 PF12320 Type 5 capsule protein repressor C-terminal domain JW980_13340 PF01168 Alanine racemase, N-terminal domain JW980_13345 PF00437 Type II/IV secretion system protein JW980_13350 PF00437 Type II/IV secretion system protein JW980_13355 PF01475 Ferric uptake regulator family JW980_13360 PF04355 SmpA / OmlA family JW980_13365 PF03658 RnfH family Ubiquitin JW980_13375 PF01814 Hemerythrin HHE cation binding domain JW980_13380 PF13230 Glutamine amidotransferases class-II JW980_13385 PF00696 Amino acid kinase family JW980_13390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JW980_13390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JW980_13390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JW980_13390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JW980_13395 PF00692 dUTPase JW980_13400 PF13361 UvrD-like helicase C-terminal domain JW980_13400 PF00580 UvrD/REP helicase N-terminal domain JW980_13405 PF00691 OmpA family JW980_13405 PF13488 Glycine zipper JW980_13410 PF01553 Acyltransferase JW980_13420 PF03775 Septum formation inhibitor MinC, C-terminal domain JW980_13425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JW980_13430 PF03776 Septum formation topological specificity factor MinE JW980_13445 PF09397 Ftsk gamma domain JW980_13445 PF17854 FtsK alpha domain JW980_13445 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JW980_13445 PF01580 FtsK/SpoIIIE family JW980_13450 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_13455 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JW980_13460 PF04376 Arginine-tRNA-protein transferase, N terminus JW980_13460 PF04377 Arginine-tRNA-protein transferase, C terminus JW980_13465 PF00583 Acetyltransferase (GNAT) family JW980_13475 PF03143 Elongation factor Tu C-terminal domain JW980_13475 PF03144 Elongation factor Tu domain 2 JW980_13475 PF00009 Elongation factor Tu GTP binding domain JW980_13480 PF00009 Elongation factor Tu GTP binding domain JW980_13480 PF14492 Elongation Factor G, domain II JW980_13480 PF00679 Elongation factor G C-terminus JW980_13480 PF03144 Elongation factor Tu domain 2 JW980_13480 PF03764 Elongation factor G, domain IV JW980_13485 PF00177 Ribosomal protein S7p/S5e JW980_13490 PF00164 Ribosomal protein S12/S23 JW980_13500 PF00109 Beta-ketoacyl synthase, N-terminal domain JW980_13500 PF02801 Beta-ketoacyl synthase, C-terminal domain JW980_13505 PF03653 Uncharacterised protein family (UPF0093) JW980_13510 PF01757 Acyltransferase family JW980_13515 PF00324 Amino acid permease JW980_13520 PF01042 Endoribonuclease L-PSP JW980_13525 PF00842 Alanine racemase, C-terminal domain JW980_13525 PF01168 Alanine racemase, N-terminal domain JW980_13530 PF01266 FAD dependent oxidoreductase JW980_13535 PF01037 Lrp/AsnC ligand binding domain JW980_13545 PF13419 Haloacid dehalogenase-like hydrolase JW980_13550 PF08543 Phosphomethylpyrimidine kinase JW980_13550 PF03070 TENA/THI-4/PQQC family JW980_13550 PF02581 Thiamine monophosphate synthase JW980_13555 PF08378 Nuclease-related domain JW980_13560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JW980_13560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JW980_13565 PF00893 Small Multidrug Resistance protein JW980_13570 PF00893 Small Multidrug Resistance protein JW980_13585 PF00394 Multicopper oxidase JW980_13585 PF07732 Multicopper oxidase JW980_13585 PF07731 Multicopper oxidase JW980_13595 PF00834 Ribulose-phosphate 3 epimerase family JW980_13615 PF00756 Putative esterase JW980_13625 PF04445 Putative SAM-dependent methyltransferase JW980_13630 PF02673 Bacitracin resistance protein BacA JW980_13635 PF00814 Glycoprotease family JW980_13640 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_13645 PF00293 NUDIX domain JW980_13655 PF00425 chorismate binding enzyme JW980_13655 PF04715 Anthranilate synthase component I, N terminal region JW980_13660 PF00155 Aminotransferase class I and II JW980_13665 PF00815 Histidinol dehydrogenase JW980_13675 PF01634 ATP phosphoribosyltransferase JW980_13680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JW980_13685 PF01722 BolA-like protein JW980_13690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JW980_13695 PF00309 Sigma-54 factor, Activator interacting domain (AID) JW980_13695 PF04963 Sigma-54 factor, core binding domain JW980_13695 PF04552 Sigma-54, DNA binding domain JW980_13700 PF01965 DJ-1/PfpI family JW980_13745 PF04333 MlaA lipoprotein JW980_13750 PF13426 PAS domain JW980_13750 PF07228 Stage II sporulation protein E (SpoIIE) JW980_13760 PF00795 Carbon-nitrogen hydrolase JW980_13765 PF02566 OsmC-like protein JW980_13780 PF00437 Type II/IV secretion system protein JW980_13800 PF01612 3'-5' exonuclease JW980_13800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JW980_13800 PF00476 DNA polymerase family A JW980_13800 PF01367 5'-3' exonuclease, C-terminal SAM fold JW980_13805 PF02325 YGGT family JW980_13810 PF03807 NADP oxidoreductase coenzyme F420-dependent JW980_13810 PF14748 Pyrroline-5-carboxylate reductase dimerisation JW980_13815 PF09179 TilS substrate binding domain JW980_13815 PF11734 TilS substrate C-terminal domain JW980_13815 PF01171 PP-loop family JW980_13820 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JW980_13825 PF02541 Ppx/GppA phosphatase family JW980_13830 PF00085 Thioredoxin JW980_13835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JW980_13835 PF07497 Rho termination factor, RNA-binding domain JW980_13835 PF07498 Rho termination factor, N-terminal domain JW980_13845 PF00216 Bacterial DNA-binding protein JW980_13850 PF03484 tRNA synthetase B5 domain JW980_13850 PF03483 B3/4 domain JW980_13850 PF03147 Ferredoxin-fold anticodon binding domain JW980_13850 PF01588 Putative tRNA binding domain JW980_13850 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JW980_13855 PF01409 tRNA synthetases class II core domain (F) JW980_13855 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JW980_13885 PF00453 Ribosomal protein L20 JW980_13890 PF01632 Ribosomal protein L35 JW980_13895 PF07690 Major Facilitator Superfamily JW980_13905 PF09335 SNARE associated Golgi protein JW980_13915 PF02798 Glutathione S-transferase, N-terminal domain JW980_13915 PF00043 Glutathione S-transferase, C-terminal domain JW980_13920 PF00011 Hsp20/alpha crystallin family JW980_13925 PF05198 Translation initiation factor IF-3, N-terminal domain JW980_13925 PF00707 Translation initiation factor IF-3, C-terminal domain JW980_13930 PF03129 Anticodon binding domain JW980_13930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JW980_13930 PF02824 TGS domain JW980_13930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JW980_13935 PF13193 AMP-binding enzyme C-terminal domain JW980_13935 PF00501 AMP-binding enzyme JW980_13940 PF04751 Protein of unknown function (DUF615) JW980_13945 PF00381 PTS HPr component phosphorylation site JW980_13950 PF03668 P-loop ATPase protein family JW980_13955 PF02569 Pantoate-beta-alanine ligase JW980_13960 PF02548 Ketopantoate hydroxymethyltransferase JW980_13965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JW980_13970 PF12626 Polymerase A arginine-rich C-terminus JW980_13970 PF12627 Probable RNA and SrmB- binding site of polymerase A JW980_13970 PF01743 Poly A polymerase head domain JW980_13980 PF03819 MazG nucleotide pyrophosphohydrolase domain JW980_13990 PF13291 ACT domain JW980_13990 PF04607 Region found in RelA / SpoT proteins JW980_13990 PF02824 TGS domain JW980_13995 PF05958 tRNA (Uracil-5-)-methyltransferase JW980_14005 PF00291 Pyridoxal-phosphate dependent enzyme JW980_14010 PF00512 His Kinase A (phospho-acceptor) domain JW980_14010 PF00672 HAMP domain JW980_14010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JW980_14010 PF01627 Hpt domain JW980_14010 PF00072 Response regulator receiver domain JW980_14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_14015 PF00378 Enoyl-CoA hydratase/isomerase JW980_14020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JW980_14020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JW980_14025 PF01261 Xylose isomerase-like TIM barrel JW980_14040 PF00672 HAMP domain JW980_14040 PF00909 Ammonium Transporter Family JW980_14050 PF02233 NAD(P) transhydrogenase beta subunit JW980_14055 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JW980_14060 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JW980_14060 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JW980_14065 PF07690 Major Facilitator Superfamily JW980_14085 PF11867 Domain of unknown function (DUF3387) JW980_14085 PF18766 SWI2/SNF2 ATPase JW980_14085 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JW980_14095 PF01420 Type I restriction modification DNA specificity domain JW980_14100 PF17191 RecG wedge domain JW980_14100 PF00270 DEAD/DEAH box helicase JW980_14100 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JW980_14105 PF02384 N-6 DNA Methylase JW980_14120 PF00120 Glutamine synthetase, catalytic domain JW980_14125 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_14125 PF13359 DDE superfamily endonuclease JW980_14135 PF00486 Transcriptional regulatory protein, C terminal JW980_14135 PF00072 Response regulator receiver domain JW980_14140 PF00512 His Kinase A (phospho-acceptor) domain JW980_14140 PF13493 Domain of unknown function (DUF4118) JW980_14140 PF13492 GAF domain JW980_14140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_14140 PF02702 Osmosensitive K+ channel His kinase sensor domain JW980_14145 PF02669 K+-transporting ATPase, c chain JW980_14155 PF03814 Potassium-transporting ATPase A subunit JW980_14160 PF13359 DDE superfamily endonuclease JW980_14160 PF13613 Helix-turn-helix of DDE superfamily endonuclease JW980_14245 PF00589 Phage integrase family JW980_14250 PF01207 Dihydrouridine synthase (Dus) JW980_14265 PF00899 ThiF family JW980_14270 PF00330 Aconitase family (aconitate hydratase) JW980_14270 PF00694 Aconitase C-terminal domain JW980_14275 PF01026 TatD related DNase JW980_14290 PF00009 Elongation factor Tu GTP binding domain JW980_14290 PF03144 Elongation factor Tu domain 2 JW980_14290 PF16658 Class II release factor RF3, C-terminal domain JW980_14295 PF00563 EAL domain JW980_14295 PF00990 Diguanylate cyclase, GGDEF domain JW980_14295 PF03707 Bacterial signalling protein N terminal repeat JW980_14300 PF03572 Peptidase family S41 JW980_14300 PF11818 C-terminal domain of tail specific protease (DUF3340) JW980_14300 PF00595 PDZ domain JW980_14300 PF17804 Tail specific protease N-terminal domain JW980_14305 PF00933 Glycosyl hydrolase family 3 N terminal domain JW980_14315 PF00561 alpha/beta hydrolase fold JW980_14320 PF00171 Aldehyde dehydrogenase family JW980_14325 PF00871 Acetokinase family JW980_14330 PF01515 Phosphate acetyl/butaryl transferase JW980_14330 PF07085 DRTGG domain JW980_14345 PF05163 DinB family JW980_14350 PF00892 EamA-like transporter family JW980_14355 PF02311 AraC-like ligand binding domain JW980_14355 PF12833 Helix-turn-helix domain JW980_14365 PF05683 Fumarase C-terminus JW980_14365 PF05681 Fumarate hydratase (Fumerase) JW980_14380 PF07724 AAA domain (Cdc48 subfamily) JW980_14380 PF10431 C-terminal, D2-small domain, of ClpB protein JW980_14380 PF06689 ClpX C4-type zinc finger JW980_14385 PF00574 Clp protease JW980_14390 PF05697 Bacterial trigger factor protein (TF) JW980_14390 PF05698 Bacterial trigger factor protein (TF) C-terminus JW980_14390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_14395 PF00593 TonB dependent receptor JW980_14395 PF07715 TonB-dependent Receptor Plug Domain JW980_14400 PF07715 TonB-dependent Receptor Plug Domain JW980_14400 PF00593 TonB dependent receptor JW980_14405 PF13640 2OG-Fe(II) oxygenase superfamily JW980_14405 PF18331 PKHD-type hydroxylase C-terminal domain JW980_14410 PF01070 FMN-dependent dehydrogenase JW980_14415 PF08502 LeuA allosteric (dimerisation) domain JW980_14415 PF00682 HMGL-like JW980_14420 PF00561 alpha/beta hydrolase fold JW980_14425 PF07021 Methionine biosynthesis protein MetW JW980_14425 PF00561 alpha/beta hydrolase fold JW980_14435 PF01725 Ham1 family JW980_14445 PF02416 mttA/Hcf106 family JW980_14450 PF02416 mttA/Hcf106 family JW980_14455 PF00902 Sec-independent protein translocase protein (TatC) JW980_14470 PF01790 Prolipoprotein diacylglyceryl transferase JW980_14490 PF00303 Thymidylate synthase JW980_14495 PF00186 Dihydrofolate reductase JW980_14510 PF01625 Peptide methionine sulfoxide reductase JW980_14520 PF01618 MotA/TolQ/ExbB proton channel family JW980_14530 PF01842 ACT domain JW980_14530 PF00551 Formyl transferase JW980_14540 PF00171 Aldehyde dehydrogenase family JW980_14545 PF00830 Ribosomal L28 family JW980_14550 PF00471 Ribosomal protein L33 JW980_14555 PF02254 TrkA-N domain JW980_14555 PF00999 Sodium/hydrogen exchanger family JW980_14580 PF13361 UvrD-like helicase C-terminal domain JW980_14580 PF00580 UvrD/REP helicase N-terminal domain JW980_14585 PF02595 Glycerate kinase family JW980_14610 PF01396 Topoisomerase DNA binding C4 zinc finger JW980_14610 PF01131 DNA topoisomerase JW980_14610 PF01751 Toprim domain JW980_14610 PF08272 Topoisomerase I zinc-ribbon-like JW980_14625 PF04102 SlyX JW980_14630 PF16326 ABC transporter C-terminal domain JW980_14630 PF00005 ABC transporter JW980_14630 PF12848 ABC transporter JW980_14635 PF03279 Bacterial lipid A biosynthesis acyltransferase JW980_14645 PF01118 Semialdehyde dehydrogenase, NAD binding domain JW980_14645 PF02774 Semialdehyde dehydrogenase, dimerisation domain JW980_14665 PF01416 tRNA pseudouridine synthase JW980_14675 PF01176 Translation initiation factor 1A / IF-1 JW980_14690 PF00180 Isocitrate/isopropylmalate dehydrogenase JW980_14700 PF00694 Aconitase C-terminal domain JW980_14705 PF00330 Aconitase family (aconitate hydratase) JW980_14715 PF03466 LysR substrate binding domain JW980_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_14735 PF00293 NUDIX domain JW980_14740 PF02896 PEP-utilising enzyme, TIM barrel domain JW980_14740 PF00391 PEP-utilising enzyme, mobile domain JW980_14740 PF05524 PEP-utilising enzyme, N-terminal JW980_14740 PF01590 GAF domain JW980_14750 PF01810 LysE type translocator JW980_14755 PF13404 AsnC-type helix-turn-helix domain JW980_14755 PF01037 Lrp/AsnC ligand binding domain JW980_14765 PF13737 Transposase DDE domain JW980_14780 PF00141 Peroxidase JW980_14785 PF12706 Beta-lactamase superfamily domain JW980_14790 PF16916 Dimerisation domain of Zinc Transporter JW980_14790 PF01545 Cation efflux family JW980_14795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_14795 PF03466 LysR substrate binding domain JW980_14810 PF00849 RNA pseudouridylate synthase JW980_14810 PF01479 S4 domain JW980_14815 PF12111 Polyribonucleotide phosphorylase C terminal JW980_14815 PF10150 Ribonuclease E/G family JW980_14815 PF00575 S1 RNA binding domain JW980_14820 PF00501 AMP-binding enzyme JW980_14820 PF13193 AMP-binding enzyme C-terminal domain JW980_14845 PF04024 PspC domain JW980_14865 PF02091 Glycyl-tRNA synthetase alpha subunit JW980_14870 PF05746 DALR anticodon binding domain JW980_14870 PF02092 Glycyl-tRNA synthetase beta subunit JW980_14895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JW980_14895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JW980_14910 PF01209 ubiE/COQ5 methyltransferase family JW980_14925 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_14925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JW980_14925 PF13247 4Fe-4S dicluster domain JW980_14935 PF03884 DNA gyrase inhibitor YacG JW980_14950 PF00753 Metallo-beta-lactamase superfamily JW980_14955 PF00762 Ferrochelatase JW980_14965 PF01177 Asp/Glu/Hydantoin racemase JW980_14985 PF01206 Sulfurtransferase TusA JW980_14990 PF00571 CBS domain JW980_14990 PF03471 Transporter associated domain JW980_14995 PF00795 Carbon-nitrogen hydrolase JW980_15000 PF01588 Putative tRNA binding domain JW980_15010 PF07963 Prokaryotic N-terminal methylation motif JW980_15010 PF08334 Type II secretion system (T2SS), protein G JW980_15015 PF00482 Type II secretion system (T2SS), protein F JW980_15020 PF00270 DEAD/DEAH box helicase JW980_15020 PF00271 Helicase conserved C-terminal domain JW980_15020 PF17764 3′ DNA-binding domain (3′BD) JW980_15020 PF18074 Primosomal protein N C-terminal domain JW980_15020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JW980_15025 PF02254 TrkA-N domain JW980_15025 PF00999 Sodium/hydrogen exchanger family JW980_15030 PF01430 Hsp33 protein JW980_15040 PF01556 DnaJ C terminal domain JW980_15040 PF00226 DnaJ domain JW980_15050 PF04325 Protein of unknown function (DUF465) JW980_15055 PF01544 CorA-like Mg2+ transporter protein JW980_15060 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JW980_15060 PF01138 3' exoribonuclease family, domain 1 JW980_15060 PF03725 3' exoribonuclease family, domain 2 JW980_15060 PF00575 S1 RNA binding domain JW980_15060 PF00013 KH domain JW980_15065 PF00312 Ribosomal protein S15 JW980_15070 PF00144 Beta-lactamase JW980_15075 PF13538 UvrD-like helicase C-terminal domain JW980_15080 PF00580 UvrD/REP helicase N-terminal domain JW980_15080 PF13361 UvrD-like helicase C-terminal domain JW980_15080 PF12705 PD-(D/E)XK nuclease superfamily JW980_15085 PF17946 RecC C-terminal domain JW980_15095 PF03976 Polyphosphate kinase 2 (PPK2) JW980_15105 PF01209 ubiE/COQ5 methyltransferase family JW980_15115 PF03109 ABC1 family JW980_15130 PF01494 FAD binding domain JW980_15135 PF01502 Phosphoribosyl-AMP cyclohydrolase JW980_15145 PF02463 RecF/RecN/SMC N terminal domain JW980_15150 PF13244 Domain of unknown function (DUF4040) JW980_15150 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JW980_15150 PF00361 Proton-conducting membrane transporter JW980_15150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JW980_15155 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JW980_15160 PF00361 Proton-conducting membrane transporter JW980_15165 PF01899 Na+/H+ ion antiporter subunit JW980_15170 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JW980_15175 PF03334 Na+/H+ antiporter subunit JW980_15180 PF02033 Ribosome-binding factor A JW980_15185 PF04760 Translation initiation factor IF-2, N-terminal region JW980_15185 PF08364 Bacterial translation initiation factor IF-2 associated region JW980_15185 PF11987 Translation-initiation factor 2 JW980_15185 PF00009 Elongation factor Tu GTP binding domain JW980_15190 PF08529 NusA N-terminal domain JW980_15190 PF00575 S1 RNA binding domain JW980_15190 PF13184 NusA-like KH domain JW980_15195 PF17384 RimP C-terminal SH3 domain JW980_15195 PF02576 RimP N-terminal domain JW980_15225 PF03840 Preprotein translocase SecG subunit JW980_15230 PF00121 Triosephosphate isomerase JW980_15235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JW980_15235 PF00437 Type II/IV secretion system protein JW980_15240 PF00482 Type II secretion system (T2SS), protein F JW980_15245 PF06750 Bacterial Peptidase A24 N-terminal domain JW980_15245 PF01478 Type IV leader peptidase family JW980_15250 PF01121 Dephospho-CoA kinase JW980_15260 PF00588 SpoU rRNA Methylase family JW980_15260 PF08032 RNA 2'-O ribose methyltransferase substrate binding JW980_15265 PF06865 Pyrimidine/purine nucleoside phosphorylase JW980_15270 PF02463 RecF/RecN/SMC N terminal domain JW980_15275 PF02622 Uncharacterized ACR, COG1678 JW980_15280 PF03652 Holliday junction resolvase JW980_15285 PF13533 Biotin-lipoyl like JW980_15295 PF04632 Fusaric acid resistance protein family JW980_15310 PF00005 ABC transporter JW980_15310 PF00664 ABC transporter transmembrane region JW980_15315 PF01066 CDP-alcohol phosphatidyltransferase JW980_15325 PF01541 GIY-YIG catalytic domain JW980_15325 PF02151 UvrB/uvrC motif JW980_15325 PF08459 UvrC Helix-hairpin-helix N-terminal JW980_15345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JW980_15345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JW980_15345 PF00378 Enoyl-CoA hydratase/isomerase JW980_15350 PF02803 Thiolase, C-terminal domain JW980_15350 PF00108 Thiolase, N-terminal domain JW980_15360 PF09313 Domain of unknown function (DUF1971) JW980_15360 PF03848 Tellurite resistance protein TehB JW980_15385 PF01323 DSBA-like thioredoxin domain JW980_15415 PF00183 Hsp90 protein JW980_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_15425 PF03922 OmpW family JW980_15430 PF03553 Na+/H+ antiporter family JW980_15430 PF13726 Na+-H+ antiporter family JW980_15455 PF04997 RNA polymerase Rpb1, domain 1 JW980_15455 PF00623 RNA polymerase Rpb1, domain 2 JW980_15455 PF04983 RNA polymerase Rpb1, domain 3 JW980_15455 PF05000 RNA polymerase Rpb1, domain 4 JW980_15455 PF04998 RNA polymerase Rpb1, domain 5 JW980_15460 PF04563 RNA polymerase beta subunit JW980_15460 PF04565 RNA polymerase Rpb2, domain 3 JW980_15460 PF04560 RNA polymerase Rpb2, domain 7 JW980_15460 PF00562 RNA polymerase Rpb2, domain 6 JW980_15460 PF04561 RNA polymerase Rpb2, domain 2 JW980_15460 PF10385 RNA polymerase beta subunit external 1 domain JW980_15465 PF00542 Ribosomal protein L7/L12 C-terminal domain JW980_15465 PF16320 Ribosomal protein L7/L12 dimerisation domain JW980_15470 PF00466 Ribosomal protein L10 JW980_15475 PF00687 Ribosomal protein L1p/L10e family JW980_15480 PF00298 Ribosomal protein L11, RNA binding domain JW980_15480 PF03946 Ribosomal protein L11, N-terminal domain JW980_15485 PF02357 Transcription termination factor nusG JW980_15485 PF00467 KOW motif JW980_15490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JW980_15500 PF03143 Elongation factor Tu C-terminal domain JW980_15500 PF03144 Elongation factor Tu domain 2 JW980_15500 PF00009 Elongation factor Tu GTP binding domain JW980_15525 PF04715 Anthranilate synthase component I, N terminal region JW980_15525 PF00425 chorismate binding enzyme JW980_15530 PF13419 Haloacid dehalogenase-like hydrolase JW980_15535 PF16697 Inner membrane component of T3SS, cytoplasmic domain JW980_15540 PF00263 Bacterial type II and III secretion system protein JW980_15540 PF03958 Bacterial type II/III secretion system short domain JW980_15545 PF11356 Type II secretion system protein C JW980_15555 PF00816 H-NS histone family JW980_15560 PF03061 Thioesterase superfamily JW980_15580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JW980_15580 PF03900 Porphobilinogen deaminase, C-terminal domain JW980_15585 PF04397 LytTr DNA-binding domain JW980_15585 PF00072 Response regulator receiver domain JW980_15590 PF06580 Histidine kinase JW980_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_15590 PF07694 5TMR of 5TMR-LYT JW980_15595 PF00206 Lyase JW980_15595 PF14698 Argininosuccinate lyase C-terminal JW980_15600 PF04362 Bacterial Fe(2+) trafficking JW980_15605 PF01895 PhoU domain JW980_15610 PF02321 Outer membrane efflux protein JW980_15620 PF13667 ThiC-associated domain JW980_15620 PF01964 Radical SAM ThiC family JW980_15625 PF00293 NUDIX domain JW980_15630 PF00149 Calcineurin-like phosphoesterase JW980_15635 PF01258 Prokaryotic dksA/traR C4-type zinc finger JW980_15640 PF00749 tRNA synthetases class I (E and Q), catalytic domain JW980_15645 PF01098 Cell cycle protein JW980_15650 PF08245 Mur ligase middle domain JW980_15650 PF02875 Mur ligase family, glutamate ligase domain JW980_15660 PF07664 Ferrous iron transport protein B C terminus JW980_15660 PF07670 Nucleoside recognition JW980_15660 PF02421 Ferrous iron transport protein B JW980_15670 PF00589 Phage integrase family JW980_15670 PF02899 Phage integrase, N-terminal SAM-like domain JW980_15675 PF13098 Thioredoxin-like domain JW980_15675 PF10411 Disulfide bond isomerase protein N-terminus JW980_15680 PF01842 ACT domain JW980_15680 PF00742 Homoserine dehydrogenase JW980_15680 PF03447 Homoserine dehydrogenase, NAD binding domain JW980_15685 PF00291 Pyridoxal-phosphate dependent enzyme JW980_15690 PF00768 D-alanyl-D-alanine carboxypeptidase JW980_15695 PF00196 Bacterial regulatory proteins, luxR family JW980_15695 PF00072 Response regulator receiver domain JW980_15700 PF00512 His Kinase A (phospho-acceptor) domain JW980_15700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_15705 PF02954 Bacterial regulatory protein, Fis family JW980_15705 PF00072 Response regulator receiver domain JW980_15705 PF00158 Sigma-54 interaction domain JW980_15710 PF00595 PDZ domain JW980_15710 PF03572 Peptidase family S41 JW980_15715 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JW980_15715 PF01676 Metalloenzyme superfamily JW980_15720 PF03739 Lipopolysaccharide export system permease LptF/LptG JW980_15725 PF03739 Lipopolysaccharide export system permease LptF/LptG JW980_15730 PF02789 Cytosol aminopeptidase family, N-terminal domain JW980_15730 PF00883 Cytosol aminopeptidase family, catalytic domain JW980_15745 PF09335 SNARE associated Golgi protein JW980_15750 PF00677 Lumazine binding domain JW980_15760 PF01872 RibD C-terminal domain JW980_15760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JW980_15765 PF03477 ATP cone domain JW980_15770 PF00909 Ammonium Transporter Family JW980_15775 PF00543 Nitrogen regulatory protein P-II JW980_15785 PF01078 Magnesium chelatase, subunit ChlI JW980_15785 PF13335 Magnesium chelatase, subunit ChlI C-terminal JW980_15800 PF03573 outer membrane porin, OprD family JW980_15805 PF00719 Inorganic pyrophosphatase JW980_15820 PF13193 AMP-binding enzyme C-terminal domain JW980_15820 PF00501 AMP-binding enzyme JW980_15825 PF00521 DNA gyrase/topoisomerase IV, subunit A JW980_15825 PF03989 DNA gyrase C-terminal domain, beta-propeller JW980_15830 PF07690 Major Facilitator Superfamily JW980_15835 PF03458 UPF0126 domain JW980_15840 PF02810 SEC-C motif JW980_15845 PF03741 Integral membrane protein TerC family JW980_15845 PF03471 Transporter associated domain JW980_15850 PF03641 Possible lysine decarboxylase JW980_15865 PF07690 Major Facilitator Superfamily JW980_15875 PF11798 IMS family HHH motif JW980_15875 PF11799 impB/mucB/samB family C-terminal domain JW980_15875 PF00817 impB/mucB/samB family JW980_15890 PF11842 Domain of unknown function (DUF3362) JW980_15890 PF04055 Radical SAM superfamily JW980_15890 PF08497 Radical SAM N-terminal JW980_15900 PF01546 Peptidase family M20/M25/M40 JW980_15900 PF07687 Peptidase dimerisation domain JW980_15940 PF01327 Polypeptide deformylase JW980_15950 PF02481 DNA recombination-mediator protein A JW980_15950 PF17782 DprA winged helix domain JW980_15955 PF01300 Telomere recombination JW980_15960 PF00892 EamA-like transporter family JW980_15970 PF00255 Glutathione peroxidase JW980_16000 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JW980_16005 PF02874 ATP synthase alpha/beta family, beta-barrel domain JW980_16005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JW980_16010 PF00231 ATP synthase JW980_16015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JW980_16015 PF00306 ATP synthase alpha/beta chain, C terminal domain JW980_16015 PF02874 ATP synthase alpha/beta family, beta-barrel domain JW980_16020 PF00213 ATP synthase delta (OSCP) subunit JW980_16025 PF00430 ATP synthase B/B' CF(0) JW980_16030 PF00137 ATP synthase subunit C JW980_16035 PF00119 ATP synthase A chain JW980_16055 PF00005 ABC transporter JW980_16060 PF00950 ABC 3 transport family JW980_16065 PF04463 Protein of unknown function (DUF523) JW980_16070 PF01810 LysE type translocator JW980_16075 PF04261 Dyp-type peroxidase family JW980_16085 PF01471 Putative peptidoglycan binding domain JW980_16085 PF01476 LysM domain JW980_16085 PF01510 N-acetylmuramoyl-L-alanine amidase JW980_16090 PF04717 Type VI secretion system, phage-baseplate injector JW980_16090 PF13296 Putative type VI secretion system Rhs element Vgr JW980_16090 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JW980_16095 PF03949 Malic enzyme, NAD binding domain JW980_16095 PF00390 Malic enzyme, N-terminal domain JW980_16110 PF03485 Arginyl tRNA synthetase N terminal domain JW980_16110 PF05746 DALR anticodon binding domain JW980_16110 PF00750 tRNA synthetases class I (R) JW980_16120 PF00561 alpha/beta hydrolase fold JW980_16135 PF02678 Pirin JW980_16135 PF05726 Pirin C-terminal cupin domain JW980_16145 PF01381 Helix-turn-helix JW980_16145 PF00145 C-5 cytosine-specific DNA methylase JW980_16150 PF02540 NAD synthase JW980_16150 PF00958 GMP synthase C terminal domain JW980_16150 PF00117 Glutamine amidotransferase class-I JW980_16160 PF07681 DoxX JW980_16165 PF09335 SNARE associated Golgi protein JW980_16180 PF13614 AAA domain JW980_16190 PF01722 BolA-like protein JW980_16240 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JW980_16240 PF18766 SWI2/SNF2 ATPase JW980_16240 PF12008 Type I restriction and modification enzyme - subunit R C terminal JW980_16255 PF01420 Type I restriction modification DNA specificity domain JW980_16260 PF02384 N-6 DNA Methylase JW980_16260 PF12161 HsdM N-terminal domain JW980_16340 PF00691 OmpA family JW980_16340 PF04355 SmpA / OmlA family JW980_16345 PF05662 Coiled stalk of trimeric autotransporter adhesin JW980_16345 PF13018 Extended Signal Peptide of Type V secretion system JW980_16345 PF03895 YadA-like membrane anchor domain JW980_16345 PF05658 Head domain of trimeric autotransporter adhesin JW980_16350 PF03895 YadA-like membrane anchor domain JW980_16350 PF05662 Coiled stalk of trimeric autotransporter adhesin JW980_16350 PF05658 Head domain of trimeric autotransporter adhesin JW980_16355 PF05658 Head domain of trimeric autotransporter adhesin JW980_16355 PF05662 Coiled stalk of trimeric autotransporter adhesin JW980_16355 PF13018 Extended Signal Peptide of Type V secretion system JW980_16355 PF03895 YadA-like membrane anchor domain JW980_16365 PF12419 SNF2 Helicase protein JW980_16365 PF00271 Helicase conserved C-terminal domain JW980_16365 PF00176 SNF2 family N-terminal domain JW980_16370 PF02378 Phosphotransferase system, EIIC JW980_16370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JW980_16375 PF00294 pfkB family carbohydrate kinase JW980_16380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JW980_16380 PF00381 PTS HPr component phosphorylation site JW980_16380 PF02896 PEP-utilising enzyme, TIM barrel domain JW980_16380 PF05524 PEP-utilising enzyme, N-terminal JW980_16380 PF00391 PEP-utilising enzyme, mobile domain JW980_16390 PF00221 Aromatic amino acid lyase JW980_16400 PF00795 Carbon-nitrogen hydrolase JW980_16400 PF00535 Glycosyl transferase family 2 JW980_16405 PF07977 FabA-like domain JW980_16415 PF00550 Phosphopantetheine attachment site JW980_16420 PF00550 Phosphopantetheine attachment site JW980_16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_16435 PF03466 LysR substrate binding domain JW980_16440 PF02677 Epoxyqueuosine reductase QueH JW980_16450 PF00925 GTP cyclohydrolase II JW980_16450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JW980_16455 PF00885 6,7-dimethyl-8-ribityllumazine synthase JW980_16460 PF01029 NusB family JW980_16465 PF02769 AIR synthase related protein, C-terminal domain JW980_16465 PF00586 AIR synthase related protein, N-terminal domain JW980_16470 PF04608 Phosphatidylglycerophosphatase A JW980_16475 PF12804 MobA-like NTP transferase domain JW980_16475 PF14602 Hexapeptide repeat of succinyl-transferase JW980_16475 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_16480 PF01380 SIS domain JW980_16485 PF08722 TnsA endonuclease N terminal JW980_16485 PF08721 TnsA endonuclease C terminal JW980_16490 PF00665 Integrase core domain JW980_16495 PF11426 Tn7 transposition regulator TnsC JW980_16495 PF13401 AAA domain JW980_16500 PF06527 TniQ JW980_16500 PF15978 Tn7-like transposition protein D JW980_16510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JW980_16510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JW980_16510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JW980_16510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JW980_16520 PF14052 Capsule assembly protein Wzi JW980_16525 PF16363 GDP-mannose 4,6 dehydratase JW980_16530 PF00342 Phosphoglucose isomerase JW980_16535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JW980_16535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JW980_16535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JW980_16540 PF00483 Nucleotidyl transferase JW980_16545 PF02397 Bacterial sugar transferase JW980_16550 PF00535 Glycosyl transferase family 2 JW980_16555 PF00534 Glycosyl transferases group 1 JW980_16575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JW980_16580 PF01575 MaoC like domain JW980_16590 PF05523 WxcM-like, C-terminal JW980_16595 PF00483 Nucleotidyl transferase JW980_16600 PF16363 GDP-mannose 4,6 dehydratase JW980_16605 PF02719 Polysaccharide biosynthesis protein JW980_16610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JW980_16615 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_16615 PF14602 Hexapeptide repeat of succinyl-transferase JW980_16615 PF17836 PglD N-terminal domain JW980_16620 PF02397 Bacterial sugar transferase JW980_16625 PF12804 MobA-like NTP transferase domain JW980_16625 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_16625 PF14602 Hexapeptide repeat of succinyl-transferase JW980_16630 PF13477 Glycosyl transferase 4-like JW980_16630 PF00534 Glycosyl transferases group 1 JW980_16635 PF00534 Glycosyl transferases group 1 JW980_16635 PF13439 Glycosyltransferase Family 4 JW980_16640 PF13439 Glycosyltransferase Family 4 JW980_16640 PF00534 Glycosyl transferases group 1 JW980_16645 PF00132 Bacterial transferase hexapeptide (six repeats) JW980_16660 PF01370 NAD dependent epimerase/dehydratase family JW980_16665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JW980_16665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JW980_16665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JW980_16670 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JW980_16670 PF10531 SLBB domain JW980_16670 PF02563 Polysaccharide biosynthesis/export protein JW980_16675 PF01451 Low molecular weight phosphotyrosine protein phosphatase JW980_16680 PF13614 AAA domain JW980_16680 PF13807 G-rich domain on putative tyrosine kinase JW980_16680 PF02706 Chain length determinant protein JW980_16685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JW980_16685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_16690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JW980_16690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_16695 PF03023 Lipid II flippase MurJ JW980_16700 PF01510 N-acetylmuramoyl-L-alanine amidase JW980_16705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JW980_16705 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JW980_16710 PF03725 3' exoribonuclease family, domain 2 JW980_16710 PF01138 3' exoribonuclease family, domain 1 JW980_16715 PF00440 Bacterial regulatory proteins, tetR family JW980_16720 PF11846 Virulence factor membrane-bound polymerase, C-terminal JW980_16720 PF04932 O-Antigen ligase JW980_16720 PF15864 Protein glycosylation ligase JW980_16725 PF01323 DSBA-like thioredoxin domain JW980_16735 PF13419 Haloacid dehalogenase-like hydrolase JW980_16740 PF00106 short chain dehydrogenase JW980_16765 PF00696 Amino acid kinase family JW980_16765 PF00583 Acetyltransferase (GNAT) family JW980_16770 PF09084 NMT1/THI5 like JW980_16775 PF09084 NMT1/THI5 like JW980_16780 PF00296 Luciferase-like monooxygenase JW980_16785 PF00528 Binding-protein-dependent transport system inner membrane component JW980_16790 PF00005 ABC transporter JW980_16795 PF08362 YcdC-like protein, C-terminal region JW980_16795 PF00440 Bacterial regulatory proteins, tetR family JW980_16810 PF06574 FAD synthetase JW980_16810 PF01687 Riboflavin kinase JW980_16815 PF08264 Anticodon-binding domain of tRNA JW980_16815 PF00133 tRNA synthetases class I (I, L, M and V) JW980_16815 PF06827 Zinc finger found in FPG and IleRS JW980_16820 PF01252 Signal peptidase (SPase) II JW980_16825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JW980_16840 PF07995 Glucose / Sorbosone dehydrogenase JW980_16870 PF00579 tRNA synthetases class I (W and Y) JW980_16875 PF03702 Anhydro-N-acetylmuramic acid kinase JW980_16880 PF13406 Transglycosylase SLT domain JW980_16885 PF02222 ATP-grasp domain JW980_16885 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JW980_16890 PF00731 AIR carboxylase JW980_16900 PF08245 Mur ligase middle domain JW980_16900 PF02875 Mur ligase family, glutamate ligase domain JW980_16900 PF01225 Mur ligase family, catalytic domain JW980_16920 PF03741 Integral membrane protein TerC family JW980_16930 PF03738 Glutathionylspermidine synthase preATP-grasp JW980_16940 PF01979 Amidohydrolase family JW980_16945 PF00156 Phosphoribosyl transferase domain JW980_16955 PF13098 Thioredoxin-like domain JW980_16955 PF10411 Disulfide bond isomerase protein N-terminus JW980_16960 PF01545 Cation efflux family JW980_16960 PF16916 Dimerisation domain of Zinc Transporter JW980_16965 PF02583 Metal-sensitive transcriptional repressor JW980_16970 PF07690 Major Facilitator Superfamily JW980_16980 PF00436 Single-strand binding protein family JW980_17010 PF13356 Arm DNA-binding domain JW980_17010 PF14659 Phage integrase, N-terminal SAM-like domain JW980_17010 PF00589 Phage integrase family JW980_17015 PF12631 MnmE helical domain JW980_17015 PF01926 50S ribosome-binding GTPase JW980_17015 PF10396 GTP-binding protein TrmE N-terminus JW980_17020 PF02096 60Kd inner membrane protein JW980_17020 PF14849 YidC periplasmic domain JW980_17025 PF01809 Putative membrane protein insertion efficiency factor JW980_17030 PF00825 Ribonuclease P JW980_17035 PF00468 Ribosomal protein L34 JW980_17045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_17045 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_17050 PF13737 Transposase DDE domain JW980_17060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JW980_17070 PF00462 Glutaredoxin JW980_17075 PF00970 Oxidoreductase FAD-binding domain JW980_17075 PF00111 2Fe-2S iron-sulfur cluster binding domain JW980_17075 PF00175 Oxidoreductase NAD-binding domain JW980_17080 PF00174 Oxidoreductase molybdopterin binding domain JW980_17100 PF08240 Alcohol dehydrogenase GroES-like domain JW980_17100 PF00107 Zinc-binding dehydrogenase JW980_17115 PF02798 Glutathione S-transferase, N-terminal domain JW980_17115 PF00043 Glutathione S-transferase, C-terminal domain JW980_17120 PF01625 Peptide methionine sulfoxide reductase JW980_17125 PF01641 SelR domain JW980_17130 PF01695 IstB-like ATP binding protein JW980_17145 PF02421 Ferrous iron transport protein B JW980_17145 PF07670 Nucleoside recognition JW980_17145 PF07664 Ferrous iron transport protein B C terminus JW980_17160 PF13411 MerR HTH family regulatory protein JW980_17190 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system JW980_17195 PF13635 Domain of unknown function (DUF4143) JW980_17195 PF13173 AAA domain JW980_17205 PF13356 Arm DNA-binding domain JW980_17205 PF00589 Phage integrase family JW980_17235 PF02583 Metal-sensitive transcriptional repressor JW980_17250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JW980_17250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JW980_17250 PF00378 Enoyl-CoA hydratase/isomerase JW980_17255 PF02803 Thiolase, C-terminal domain JW980_17255 PF00108 Thiolase, N-terminal domain JW980_17280 PF12833 Helix-turn-helix domain JW980_17280 PF02311 AraC-like ligand binding domain JW980_17285 PF01625 Peptide methionine sulfoxide reductase JW980_17305 PF01641 SelR domain JW980_17310 PF01625 Peptide methionine sulfoxide reductase JW980_17315 PF00990 Diguanylate cyclase, GGDEF domain JW980_17325 PF01042 Endoribonuclease L-PSP JW980_17335 PF02705 K+ potassium transporter JW980_17340 PF02417 Chromate transporter JW980_17345 PF09828 Chromate resistance exported protein JW980_17365 PF02566 OsmC-like protein JW980_17370 PF01047 MarR family JW980_17385 PF00005 ABC transporter JW980_17385 PF08402 TOBE domain JW980_17405 PF13358 DDE superfamily endonuclease JW980_17425 PF13610 DDE domain JW980_17435 PF00756 Putative esterase JW980_17440 PF00107 Zinc-binding dehydrogenase JW980_17440 PF08240 Alcohol dehydrogenase GroES-like domain JW980_17445 PF02583 Metal-sensitive transcriptional repressor JW980_17450 PF13610 DDE domain JW980_17455 PF08240 Alcohol dehydrogenase GroES-like domain JW980_17455 PF00107 Zinc-binding dehydrogenase JW980_17465 PF17755 UvrA DNA-binding domain JW980_17470 PF13737 Transposase DDE domain JW980_17475 PF13823 Alcohol dehydrogenase GroES-associated JW980_17475 PF00107 Zinc-binding dehydrogenase JW980_17475 PF08240 Alcohol dehydrogenase GroES-like domain JW980_17490 PF00239 Resolvase, N terminal domain JW980_17490 PF02796 Helix-turn-helix domain of resolvase JW980_17510 PF01661 Macro domain JW980_17525 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JW980_17530 PF01850 PIN domain JW980_17565 PF00069 Protein kinase domain JW980_17570 PF01226 Formate/nitrite transporter JW980_17600 PF13614 AAA domain JW980_17605 PF02195 ParB-like nuclease domain JW980_17605 PF17762 HTH domain found in ParB protein JW980_17625 PF07690 Major Facilitator Superfamily JW980_17630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JW980_17630 PF03466 LysR substrate binding domain JW980_17640 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JW980_17645 PF02384 N-6 DNA Methylase JW980_17650 PF01420 Type I restriction modification DNA specificity domain JW980_17665 PF11867 Domain of unknown function (DUF3387) JW980_17665 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JW980_17665 PF18766 SWI2/SNF2 ATPase JW980_17690 PF11798 IMS family HHH motif JW980_17690 PF11799 impB/mucB/samB family C-terminal domain JW980_17690 PF00817 impB/mucB/samB family JW980_17690 PF13438 Domain of unknown function (DUF4113) JW980_17695 PF00717 Peptidase S24-like JW980_17695 PF01726 LexA DNA binding domain JW980_17705 PF13737 Transposase DDE domain JW980_17710 PF13411 MerR HTH family regulatory protein JW980_17720 PF13610 DDE domain JW980_17725 PF00563 EAL domain JW980_17725 PF11809 Domain of unknown function (DUF3330) JW980_17730 PF05052 MerE protein JW980_17735 PF13411 MerR HTH family regulatory protein JW980_17740 PF07992 Pyridine nucleotide-disulphide oxidoreductase JW980_17740 PF00403 Heavy-metal-associated domain JW980_17740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JW980_17745 PF03203 MerC mercury resistance protein JW980_17750 PF00403 Heavy-metal-associated domain JW980_17755 PF02411 MerT mercuric transport protein JW980_17760 PF09278 MerR, DNA binding JW980_17760 PF00376 MerR family regulatory protein JW980_17775 PF00403 Heavy-metal-associated domain JW980_17815 PF13194 Domain of unknown function (DUF4010) JW980_17820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JW980_17820 PF00672 HAMP domain JW980_17820 PF00512 His Kinase A (phospho-acceptor) domain JW980_17825 PF00486 Transcriptional regulatory protein, C terminal JW980_17825 PF00072 Response regulator receiver domain JW980_17835 PF07731 Multicopper oxidase JW980_17835 PF00394 Multicopper oxidase JW980_17835 PF07732 Multicopper oxidase