locus-tag class description MRY16_00005 PF00308 Bacterial dnaA protein MRY16_00005 PF08299 Bacterial dnaA protein helix-turn-helix MRY16_00005 PF11638 DnaA N-terminal domain MRY16_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MRY16_00010 PF02767 DNA polymerase III beta subunit, central domain MRY16_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MRY16_00015 PF02463 RecF/RecN/SMC N terminal domain MRY16_00020 PF01751 Toprim domain MRY16_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_00020 PF00986 DNA gyrase B subunit, carboxyl terminus MRY16_00020 PF00204 DNA gyrase B MRY16_00020 PF18053 DNA gyrase B subunit insert domain MRY16_00030 PF09335 SNARE associated Golgi protein MRY16_00035 PF00005 ABC transporter MRY16_00035 PF12848 ABC transporter MRY16_00065 PF01521 Iron-sulphur cluster biosynthesis MRY16_00070 PF03702 Anhydro-N-acetylmuramic acid kinase MRY16_00075 PF00579 tRNA synthetases class I (W and Y) MRY16_00120 PF00171 Aldehyde dehydrogenase family MRY16_00125 PF00209 Sodium:neurotransmitter symporter family MRY16_00135 PF01189 16S rRNA methyltransferase RsmB/F MRY16_00135 PF01029 NusB family MRY16_00140 PF02911 Formyl transferase, C-terminal domain MRY16_00140 PF00551 Formyl transferase MRY16_00145 PF00920 Dehydratase family MRY16_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_00160 PF03466 LysR substrate binding domain MRY16_00170 PF00860 Permease family MRY16_00175 PF00311 Phosphoenolpyruvate carboxylase MRY16_00180 PF00440 Bacterial regulatory proteins, tetR family MRY16_00185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRY16_00190 PF00873 AcrB/AcrD/AcrF family MRY16_00200 PF00226 DnaJ domain MRY16_00200 PF01556 DnaJ C terminal domain MRY16_00200 PF00684 DnaJ central domain MRY16_00205 PF05173 Dihydrodipicolinate reductase, C-terminus MRY16_00205 PF01113 Dihydrodipicolinate reductase, N-terminus MRY16_00215 PF07690 Major Facilitator Superfamily MRY16_00220 PF00248 Aldo/keto reductase family MRY16_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_00225 PF03466 LysR substrate binding domain MRY16_00235 PF00155 Aminotransferase class I and II MRY16_00235 PF00392 Bacterial regulatory proteins, gntR family MRY16_00240 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_00240 PF00107 Zinc-binding dehydrogenase MRY16_00245 PF03352 Methyladenine glycosylase MRY16_00255 PF01551 Peptidase family M23 MRY16_00260 PF14815 NUDIX domain MRY16_00260 PF00730 HhH-GPD superfamily base excision DNA repair protein MRY16_00260 PF00633 Helix-hairpin-helix motif MRY16_00270 PF07043 Protein of unknown function (DUF1328) MRY16_00275 PF03692 Putative zinc- or iron-chelating domain MRY16_00280 PF07995 Glucose / Sorbosone dehydrogenase MRY16_00285 PF00144 Beta-lactamase MRY16_00290 PF16193 AAA C-terminal domain MRY16_00290 PF12002 MgsA AAA+ ATPase C terminal MRY16_00290 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_00295 PF00892 EamA-like transporter family MRY16_00305 PF01259 SAICAR synthetase MRY16_00315 PF00701 Dihydrodipicolinate synthetase family MRY16_00320 PF00857 Isochorismatase family MRY16_00335 PF01380 SIS domain MRY16_00340 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_00340 PF12804 MobA-like NTP transferase domain MRY16_00340 PF14602 Hexapeptide repeat of succinyl-transferase MRY16_00345 PF04608 Phosphatidylglycerophosphatase A MRY16_00350 PF00586 AIR synthase related protein, N-terminal domain MRY16_00350 PF02769 AIR synthase related protein, C-terminal domain MRY16_00355 PF01029 NusB family MRY16_00360 PF00885 6,7-dimethyl-8-ribityllumazine synthase MRY16_00365 PF00925 GTP cyclohydrolase II MRY16_00365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MRY16_00390 PF02580 D-Tyr-tRNA(Tyr) deacylase MRY16_00395 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MRY16_00395 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MRY16_00400 PF00581 Rhodanese-like domain MRY16_00405 PF02666 Phosphatidylserine decarboxylase MRY16_00415 PF03466 LysR substrate binding domain MRY16_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_00430 PF11808 Phosphate regulon sensor protein PhoR MRY16_00430 PF00512 His Kinase A (phospho-acceptor) domain MRY16_00430 PF00989 PAS fold MRY16_00430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_00435 PF00072 Response regulator receiver domain MRY16_00435 PF00486 Transcriptional regulatory protein, C terminal MRY16_00445 PF00106 short chain dehydrogenase MRY16_00450 PF01554 MatE MRY16_00455 PF00155 Aminotransferase class I and II MRY16_00465 PF04286 Protein of unknown function (DUF445) MRY16_00480 PF04262 Glutamate-cysteine ligase MRY16_00485 PF02600 Disulfide bond formation protein DsbB MRY16_00490 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MRY16_00490 PF04717 Type VI secretion system, phage-baseplate injector MRY16_00490 PF13296 Putative type VI secretion system Rhs element Vgr MRY16_00525 PF05728 Uncharacterised protein family (UPF0227) MRY16_00530 PF00204 DNA gyrase B MRY16_00530 PF00986 DNA gyrase B subunit, carboxyl terminus MRY16_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_00530 PF01751 Toprim domain MRY16_00535 PF01554 MatE MRY16_00545 PF02653 Branched-chain amino acid transport system / permease component MRY16_00555 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRY16_00555 PF00005 ABC transporter MRY16_00560 PF00005 ABC transporter MRY16_00570 PF00583 Acetyltransferase (GNAT) family MRY16_00595 PF02683 Cytochrome C biogenesis protein transmembrane region MRY16_00595 PF11412 Disulphide bond corrector protein DsbC MRY16_00605 PF17151 Periplasmic sensor domain MRY16_00605 PF00990 Diguanylate cyclase, GGDEF domain MRY16_00610 PF07859 alpha/beta hydrolase fold MRY16_00620 PF03960 ArsC family MRY16_00625 PF03372 Endonuclease/Exonuclease/phosphatase family MRY16_00630 PF00156 Phosphoribosyl transferase domain MRY16_00650 PF01047 MarR family MRY16_00655 PF00255 Glutathione peroxidase MRY16_00660 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MRY16_00660 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MRY16_00665 PF04101 Glycosyltransferase family 28 C-terminal domain MRY16_00665 PF03033 Glycosyltransferase family 28 N-terminal domain MRY16_00670 PF01225 Mur ligase family, catalytic domain MRY16_00670 PF08245 Mur ligase middle domain MRY16_00670 PF02875 Mur ligase family, glutamate ligase domain MRY16_00675 PF01820 D-ala D-ala ligase N-terminus MRY16_00675 PF07478 D-ala D-ala ligase C-terminus MRY16_00680 PF03799 Cell division protein FtsQ MRY16_00680 PF08478 POTRA domain, FtsQ-type MRY16_00685 PF02491 SHS2 domain inserted in FTSA MRY16_00690 PF00091 Tubulin/FtsZ family, GTPase domain MRY16_00690 PF12327 FtsZ family, C-terminal domain MRY16_00695 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MRY16_00710 PF17831 Pyruvate dehydrogenase E1 component middle domain MRY16_00710 PF00456 Transketolase, thiamine diphosphate binding domain MRY16_00715 PF00364 Biotin-requiring enzyme MRY16_00715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRY16_00715 PF02817 e3 binding domain MRY16_00725 PF01169 Uncharacterized protein family UPF0016 MRY16_00730 PF00593 TonB dependent receptor MRY16_00730 PF07715 TonB-dependent Receptor Plug Domain MRY16_00735 PF01613 Flavin reductase like domain MRY16_00735 PF00258 Flavodoxin MRY16_00740 PF03692 Putative zinc- or iron-chelating domain MRY16_00745 PF00571 CBS domain MRY16_00745 PF00478 IMP dehydrogenase / GMP reductase domain MRY16_00750 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRY16_00750 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRY16_00750 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRY16_00750 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRY16_00755 PF01243 Pyridoxamine 5'-phosphate oxidase MRY16_00755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MRY16_00760 PF17768 RecJ OB domain MRY16_00760 PF02272 DHHA1 domain MRY16_00760 PF01368 DHH family MRY16_00785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRY16_00790 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MRY16_00795 PF04452 RNA methyltransferase MRY16_00800 PF00924 Mechanosensitive ion channel MRY16_00810 PF00501 AMP-binding enzyme MRY16_00810 PF13193 AMP-binding enzyme C-terminal domain MRY16_00810 PF16177 Acetyl-coenzyme A synthetase N-terminus MRY16_00815 PF00857 Isochorismatase family MRY16_00825 PF00296 Luciferase-like monooxygenase MRY16_00830 PF03358 NADPH-dependent FMN reductase MRY16_00835 PF00196 Bacterial regulatory proteins, luxR family MRY16_00835 PF00072 Response regulator receiver domain MRY16_00845 PF00990 Diguanylate cyclase, GGDEF domain MRY16_00855 PF17755 UvrA DNA-binding domain MRY16_00855 PF17760 UvrA interaction domain MRY16_00860 PF00440 Bacterial regulatory proteins, tetR family MRY16_00860 PF16925 Tetracyclin repressor-like, C-terminal domain MRY16_00865 PF14765 Polyketide synthase dehydratase MRY16_00865 PF00550 Phosphopantetheine attachment site MRY16_00865 PF08659 KR domain MRY16_00865 PF02801 Beta-ketoacyl synthase, C-terminal domain MRY16_00865 PF00109 Beta-ketoacyl synthase, N-terminal domain MRY16_00865 PF16197 Ketoacyl-synthetase C-terminal extension MRY16_00865 PF00698 Acyl transferase domain MRY16_00865 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_00865 PF00107 Zinc-binding dehydrogenase MRY16_00875 PF03070 TENA/THI-4/PQQC family MRY16_00885 PF07690 Major Facilitator Superfamily MRY16_00890 PF00436 Single-strand binding protein family MRY16_00895 PF00324 Amino acid permease MRY16_00900 PF00155 Aminotransferase class I and II MRY16_00900 PF00392 Bacterial regulatory proteins, gntR family MRY16_00905 PF00202 Aminotransferase class-III MRY16_00910 PF00171 Aldehyde dehydrogenase family MRY16_00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_00920 PF00857 Isochorismatase family MRY16_00925 PF05726 Pirin C-terminal cupin domain MRY16_00925 PF02678 Pirin MRY16_00930 PF01593 Flavin containing amine oxidoreductase MRY16_00955 PF13296 Putative type VI secretion system Rhs element Vgr MRY16_00955 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MRY16_00955 PF04717 Type VI secretion system, phage-baseplate injector MRY16_00980 PF02705 K+ potassium transporter MRY16_00995 PF00230 Major intrinsic protein MRY16_01010 PF00977 Histidine biosynthesis protein MRY16_01015 PF01636 Phosphotransferase enzyme family MRY16_01035 PF03992 Antibiotic biosynthesis monooxygenase MRY16_01045 PF01381 Helix-turn-helix MRY16_01045 PF08671 Anti-repressor SinI MRY16_01050 PF01740 STAS domain MRY16_01050 PF00916 Sulfate permease family MRY16_01055 PF00977 Histidine biosynthesis protein MRY16_01070 PF00117 Glutamine amidotransferase class-I MRY16_01075 PF00475 Imidazoleglycerol-phosphate dehydratase MRY16_01100 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MRY16_01100 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MRY16_01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_01105 PF00512 His Kinase A (phospho-acceptor) domain MRY16_01105 PF00672 HAMP domain MRY16_01110 PF00486 Transcriptional regulatory protein, C terminal MRY16_01110 PF00072 Response regulator receiver domain MRY16_01115 PF16921 Tex protein YqgF-like domain MRY16_01115 PF09371 Tex-like protein N-terminal domain MRY16_01115 PF00575 S1 RNA binding domain MRY16_01115 PF17674 HHH domain MRY16_01140 PF00083 Sugar (and other) transporter MRY16_01145 PF13411 MerR HTH family regulatory protein MRY16_01150 PF00550 Phosphopantetheine attachment site MRY16_01150 PF07993 Male sterility protein MRY16_01155 PF00106 short chain dehydrogenase MRY16_01160 PF01053 Cys/Met metabolism PLP-dependent enzyme MRY16_01165 PF12848 ABC transporter MRY16_01165 PF00005 ABC transporter MRY16_01200 PF00529 HlyD membrane-fusion protein of T1SS MRY16_01200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRY16_01205 PF00873 AcrB/AcrD/AcrF family MRY16_01210 PF01545 Cation efflux family MRY16_01240 PF00324 Amino acid permease MRY16_01255 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRY16_01270 PF01795 MraW methylase family MRY16_01280 PF00905 Penicillin binding protein transpeptidase domain MRY16_01280 PF03717 Penicillin-binding Protein dimerisation domain MRY16_01285 PF08245 Mur ligase middle domain MRY16_01285 PF02875 Mur ligase family, glutamate ligase domain MRY16_01285 PF01225 Mur ligase family, catalytic domain MRY16_01290 PF08245 Mur ligase middle domain MRY16_01290 PF02875 Mur ligase family, glutamate ligase domain MRY16_01290 PF01225 Mur ligase family, catalytic domain MRY16_01295 PF00953 Glycosyl transferase family 4 MRY16_01300 PF13847 Methyltransferase domain MRY16_01305 PF17092 Penicillin-binding protein OB-like domain MRY16_01305 PF00905 Penicillin binding protein transpeptidase domain MRY16_01305 PF00912 Transglycosylase MRY16_01310 PF11104 Type IV pilus assembly protein PilM; MRY16_01315 PF05137 Fimbrial assembly protein (PilN) MRY16_01320 PF04350 Pilus assembly protein, PilO MRY16_01330 PF00263 Bacterial type II and III secretion system protein MRY16_01330 PF11741 AMIN domain MRY16_01330 PF07660 Secretin and TonB N terminus short domain MRY16_01330 PF03958 Bacterial type II/III secretion system short domain MRY16_01335 PF01202 Shikimate kinase MRY16_01340 PF01761 3-dehydroquinate synthase MRY16_01350 PF01645 Conserved region in glutamate synthase MRY16_01350 PF01493 GXGXG motif MRY16_01350 PF04898 Glutamate synthase central domain MRY16_01350 PF00310 Glutamine amidotransferases class-II MRY16_01355 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MRY16_01355 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_01365 PF04011 LemA family MRY16_01370 PF04536 TPM domain MRY16_01380 PF00114 Pilin (bacterial filament) MRY16_01380 PF07963 Prokaryotic N-terminal methylation motif MRY16_01390 PF00144 Beta-lactamase MRY16_01395 PF00114 Pilin (bacterial filament) MRY16_01395 PF07963 Prokaryotic N-terminal methylation motif MRY16_01405 PF15864 Protein glycosylation ligase MRY16_01405 PF04932 O-Antigen ligase MRY16_01405 PF11846 Virulence factor membrane-bound polymerase, C-terminal MRY16_01410 PF00210 Ferritin-like domain MRY16_01415 PF04324 BFD-like [2Fe-2S] binding domain MRY16_01420 PF01042 Endoribonuclease L-PSP MRY16_01425 PF13291 ACT domain MRY16_01425 PF04607 Region found in RelA / SpoT proteins MRY16_01425 PF02824 TGS domain MRY16_01430 PF01192 RNA polymerase Rpb6 MRY16_01435 PF00625 Guanylate kinase MRY16_01440 PF02401 LytB protein MRY16_01475 PF07963 Prokaryotic N-terminal methylation motif MRY16_01475 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor MRY16_01480 PF00886 Ribosomal protein S16 MRY16_01485 PF05239 PRC-barrel domain MRY16_01485 PF01782 RimM N-terminal domain MRY16_01490 PF01746 tRNA (Guanine-1)-methyltransferase MRY16_01495 PF01245 Ribosomal protein L19 MRY16_01500 PF00561 alpha/beta hydrolase fold MRY16_01505 PF03280 Proteobacterial lipase chaperone protein MRY16_01510 PF01509 TruB family pseudouridylate synthase (N terminal domain) MRY16_01510 PF16198 tRNA pseudouridylate synthase B C-terminal domain MRY16_01510 PF09157 Pseudouridine synthase II TruB, C-terminal MRY16_01515 PF01925 Sulfite exporter TauE/SafE MRY16_01525 PF00892 EamA-like transporter family MRY16_01530 PF00892 EamA-like transporter family MRY16_01535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRY16_01535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRY16_01540 PF01565 FAD binding domain MRY16_01540 PF02913 FAD linked oxidases, C-terminal domain MRY16_01555 PF03992 Antibiotic biosynthesis monooxygenase MRY16_01560 PF02525 Flavodoxin-like fold MRY16_01575 PF07690 Major Facilitator Superfamily MRY16_01580 PF12805 FUSC-like inner membrane protein yccS MRY16_01585 PF00080 Copper/zinc superoxide dismutase (SODC) MRY16_01590 PF01594 AI-2E family transporter MRY16_01595 PF13614 AAA domain MRY16_01605 PF01209 ubiE/COQ5 methyltransferase family MRY16_01620 PF05958 tRNA (Uracil-5-)-methyltransferase MRY16_01620 PF01938 TRAM domain MRY16_01640 PF00082 Subtilase family MRY16_01650 PF00743 Flavin-binding monooxygenase-like MRY16_01665 PF05746 DALR anticodon binding domain MRY16_01665 PF02092 Glycyl-tRNA synthetase beta subunit MRY16_01670 PF02091 Glycyl-tRNA synthetase alpha subunit MRY16_01685 PF00939 Sodium:sulfate symporter transmembrane region MRY16_01695 PF01743 Poly A polymerase head domain MRY16_01695 PF00571 CBS domain MRY16_01700 PF04024 PspC domain MRY16_01710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_01710 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRY16_01710 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_01710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_01720 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MRY16_01720 PF01488 Shikimate / quinate 5-dehydrogenase MRY16_01720 PF08501 Shikimate dehydrogenase substrate binding domain MRY16_01730 PF01218 Coproporphyrinogen III oxidase MRY16_01735 PF00925 GTP cyclohydrolase II MRY16_01740 PF02780 Transketolase, C-terminal domain MRY16_01740 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MRY16_01740 PF02779 Transketolase, pyrimidine binding domain MRY16_01745 PF00459 Inositol monophosphatase family MRY16_01750 PF00270 DEAD/DEAH box helicase MRY16_01750 PF00271 Helicase conserved C-terminal domain MRY16_01755 PF00005 ABC transporter MRY16_01760 PF02405 Permease MlaE MRY16_01765 PF02470 MlaD protein MRY16_01770 PF05494 MlaC protein MRY16_01785 PF01544 CorA-like Mg2+ transporter protein MRY16_01790 PF03641 Possible lysine decarboxylase MRY16_01800 PF00156 Phosphoribosyl transferase domain MRY16_01805 PF00270 DEAD/DEAH box helicase MRY16_01805 PF17191 RecG wedge domain MRY16_01805 PF00271 Helicase conserved C-terminal domain MRY16_01820 PF01553 Acyltransferase MRY16_01830 PF00375 Sodium:dicarboxylate symporter family MRY16_01840 PF01926 50S ribosome-binding GTPase MRY16_01845 PF02082 Transcriptional regulator MRY16_01850 PF00175 Oxidoreductase NAD-binding domain MRY16_01850 PF00042 Globin MRY16_01850 PF00970 Oxidoreductase FAD-binding domain MRY16_01855 PF05872 Bacterial protein of unknown function (DUF853) MRY16_01860 PF01053 Cys/Met metabolism PLP-dependent enzyme MRY16_01865 PF00117 Glutamine amidotransferase class-I MRY16_01870 PF00338 Ribosomal protein S10p/S20e MRY16_01875 PF00297 Ribosomal protein L3 MRY16_01880 PF00573 Ribosomal protein L4/L1 family MRY16_01885 PF00276 Ribosomal protein L23 MRY16_01890 PF00181 Ribosomal Proteins L2, RNA binding domain MRY16_01890 PF03947 Ribosomal Proteins L2, C-terminal domain MRY16_01895 PF00203 Ribosomal protein S19 MRY16_01900 PF00237 Ribosomal protein L22p/L17e MRY16_01910 PF00252 Ribosomal protein L16p/L10e MRY16_01915 PF00831 Ribosomal L29 protein MRY16_01920 PF00366 Ribosomal protein S17 MRY16_01925 PF00238 Ribosomal protein L14p/L23e MRY16_01930 PF00467 KOW motif MRY16_01930 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MRY16_01935 PF00281 Ribosomal protein L5 MRY16_01935 PF00673 ribosomal L5P family C-terminus MRY16_01940 PF00253 Ribosomal protein S14p/S29e MRY16_01945 PF00410 Ribosomal protein S8 MRY16_01950 PF00347 Ribosomal protein L6 MRY16_01955 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MRY16_01960 PF00333 Ribosomal protein S5, N-terminal domain MRY16_01960 PF03719 Ribosomal protein S5, C-terminal domain MRY16_01965 PF00327 Ribosomal protein L30p/L7e MRY16_01970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MRY16_01975 PF00344 SecY translocase MRY16_01980 PF00444 Ribosomal protein L36 MRY16_01985 PF00416 Ribosomal protein S13/S18 MRY16_01990 PF00411 Ribosomal protein S11 MRY16_01995 PF00163 Ribosomal protein S4/S9 N-terminal domain MRY16_01995 PF01479 S4 domain MRY16_02000 PF01000 RNA polymerase Rpb3/RpoA insert domain MRY16_02000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MRY16_02000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MRY16_02005 PF01196 Ribosomal protein L17 MRY16_02015 PF00743 Flavin-binding monooxygenase-like MRY16_02025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_02025 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_02025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_02030 PF03937 Flavinator of succinate dehydrogenase MRY16_02065 PF00892 EamA-like transporter family MRY16_02080 PF01432 Peptidase family M3 MRY16_02090 PF00773 RNB domain MRY16_02090 PF00575 S1 RNA binding domain MRY16_02090 PF17876 Cold shock domain MRY16_02090 PF08461 Ribonuclease R winged-helix domain MRY16_02090 PF08206 Ribonuclease B OB domain MRY16_02125 PF01557 Fumarylacetoacetate (FAA) hydrolase family MRY16_02145 PF03631 Virulence factor BrkB MRY16_02150 PF03358 NADPH-dependent FMN reductase MRY16_02155 PF01790 Prolipoprotein diacylglyceryl transferase MRY16_02170 PF00902 Sec-independent protein translocase protein (TatC) MRY16_02175 PF02416 mttA/Hcf106 family MRY16_02180 PF02416 mttA/Hcf106 family MRY16_02185 PF01725 Ham1 family MRY16_02200 PF07021 Methionine biosynthesis protein MetW MRY16_02200 PF00561 alpha/beta hydrolase fold MRY16_02205 PF00561 alpha/beta hydrolase fold MRY16_02210 PF00682 HMGL-like MRY16_02210 PF08502 LeuA allosteric (dimerisation) domain MRY16_02215 PF13640 2OG-Fe(II) oxygenase superfamily MRY16_02215 PF18331 PKHD-type hydroxylase C-terminal domain MRY16_02220 PF00593 TonB dependent receptor MRY16_02220 PF07715 TonB-dependent Receptor Plug Domain MRY16_02225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_02225 PF05698 Bacterial trigger factor protein (TF) C-terminus MRY16_02225 PF05697 Bacterial trigger factor protein (TF) MRY16_02230 PF00574 Clp protease MRY16_02235 PF07724 AAA domain (Cdc48 subfamily) MRY16_02235 PF10431 C-terminal, D2-small domain, of ClpB protein MRY16_02235 PF06689 ClpX C4-type zinc finger MRY16_02250 PF05683 Fumarase C-terminus MRY16_02250 PF05681 Fumarate hydratase (Fumerase) MRY16_02260 PF00892 EamA-like transporter family MRY16_02265 PF01515 Phosphate acetyl/butaryl transferase MRY16_02265 PF07085 DRTGG domain MRY16_02270 PF00871 Acetokinase family MRY16_02275 PF00171 Aldehyde dehydrogenase family MRY16_02280 PF12697 Alpha/beta hydrolase family MRY16_02290 PF00933 Glycosyl hydrolase family 3 N terminal domain MRY16_02295 PF03572 Peptidase family S41 MRY16_02295 PF11818 C-terminal domain of tail specific protease (DUF3340) MRY16_02295 PF00595 PDZ domain MRY16_02295 PF17804 Tail specific protease N-terminal domain MRY16_02320 PF16360 GTP-binding GTPase Middle Region MRY16_02320 PF13167 GTP-binding GTPase N-terminal MRY16_02320 PF01926 50S ribosome-binding GTPase MRY16_02330 PF13091 PLD-like domain MRY16_02335 PF00149 Calcineurin-like phosphoesterase MRY16_02335 PF10518 TAT (twin-arginine translocation) pathway signal sequence MRY16_02340 PF01389 OmpA-like transmembrane domain MRY16_02340 PF00691 OmpA family MRY16_02345 PF17152 Periplasmic sensor domain MRY16_02345 PF00990 Diguanylate cyclase, GGDEF domain MRY16_02385 PF00753 Metallo-beta-lactamase superfamily MRY16_02385 PF04273 Putative phosphatase (DUF442) MRY16_02390 PF00561 alpha/beta hydrolase fold MRY16_02395 PF00085 Thioredoxin MRY16_02400 PF03061 Thioesterase superfamily MRY16_02405 PF13185 GAF domain MRY16_02420 PF04461 Protein of unknown function (DUF520) MRY16_02430 PF01266 FAD dependent oxidoreductase MRY16_02430 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MRY16_02440 PF03795 YCII-related domain MRY16_02445 PF04279 Intracellular septation protein A MRY16_02450 PF02811 PHP domain MRY16_02455 PF01062 Bestrophin, RFP-TM, chloride channel MRY16_02460 PF04002 RadC-like JAB domain MRY16_02465 PF02441 Flavoprotein MRY16_02465 PF04127 DNA / pantothenate metabolism flavoprotein MRY16_02475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MRY16_02475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MRY16_02485 PF02556 Preprotein translocase subunit SecB MRY16_02490 PF00462 Glutaredoxin MRY16_02500 PF03193 RsgA GTPase MRY16_02505 PF00929 Exonuclease MRY16_02525 PF02321 Outer membrane efflux protein MRY16_02530 PF00005 ABC transporter MRY16_02530 PF02687 FtsX-like permease family MRY16_02530 PF12704 MacB-like periplasmic core domain MRY16_02535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRY16_02545 PF06144 DNA polymerase III, delta subunit MRY16_02555 PF08264 Anticodon-binding domain of tRNA MRY16_02555 PF00133 tRNA synthetases class I (I, L, M and V) MRY16_02555 PF13603 Leucyl-tRNA synthetase, Domain 2 MRY16_02555 PF09334 tRNA synthetases class I (M) MRY16_02565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRY16_02565 PF00205 Thiamine pyrophosphate enzyme, central domain MRY16_02565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRY16_02570 PF10369 Small subunit of acetolactate synthase MRY16_02575 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MRY16_02575 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MRY16_02580 PF00563 EAL domain MRY16_02580 PF00990 Diguanylate cyclase, GGDEF domain MRY16_02580 PF03707 Bacterial signalling protein N terminal repeat MRY16_02585 PF00561 alpha/beta hydrolase fold MRY16_02590 PF03960 ArsC family MRY16_02595 PF01022 Bacterial regulatory protein, arsR family MRY16_02605 PF01758 Sodium Bile acid symporter family MRY16_02610 PF03358 NADPH-dependent FMN reductase MRY16_02625 PF00009 Elongation factor Tu GTP binding domain MRY16_02625 PF03144 Elongation factor Tu domain 2 MRY16_02625 PF16658 Class II release factor RF3, C-terminal domain MRY16_02635 PF11738 Protein of unknown function (DUF3298) MRY16_02635 PF13739 Deacetylase PdaC MRY16_02635 PF01522 Polysaccharide deacetylase MRY16_02640 PF01026 TatD related DNase MRY16_02645 PF00694 Aconitase C-terminal domain MRY16_02645 PF00330 Aconitase family (aconitate hydratase) MRY16_02660 PF00899 ThiF family MRY16_02670 PF01207 Dihydrouridine synthase (Dus) MRY16_02675 PF00589 Phage integrase family MRY16_02750 PF02661 Fic/DOC family MRY16_02760 PF02384 N-6 DNA Methylase MRY16_02765 PF01420 Type I restriction modification DNA specificity domain MRY16_02790 PF12419 SNF2 Helicase protein MRY16_02790 PF00271 Helicase conserved C-terminal domain MRY16_02790 PF00176 SNF2 family N-terminal domain MRY16_02810 PF07690 Major Facilitator Superfamily MRY16_02820 PF00376 MerR family regulatory protein MRY16_02820 PF09278 MerR, DNA binding MRY16_02825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MRY16_02825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MRY16_02830 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MRY16_02835 PF02233 NAD(P) transhydrogenase beta subunit MRY16_02845 PF00106 short chain dehydrogenase MRY16_02850 PF00909 Ammonium Transporter Family MRY16_02850 PF00672 HAMP domain MRY16_02865 PF01261 Xylose isomerase-like TIM barrel MRY16_02870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRY16_02870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRY16_02875 PF00378 Enoyl-CoA hydratase/isomerase MRY16_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_02880 PF00512 His Kinase A (phospho-acceptor) domain MRY16_02880 PF01627 Hpt domain MRY16_02880 PF00072 Response regulator receiver domain MRY16_02880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRY16_02880 PF00672 HAMP domain MRY16_02885 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_02895 PF05958 tRNA (Uracil-5-)-methyltransferase MRY16_02900 PF02824 TGS domain MRY16_02900 PF04607 Region found in RelA / SpoT proteins MRY16_02900 PF13291 ACT domain MRY16_02915 PF03819 MazG nucleotide pyrophosphohydrolase domain MRY16_02925 PF01743 Poly A polymerase head domain MRY16_02925 PF12626 Polymerase A arginine-rich C-terminus MRY16_02925 PF12627 Probable RNA and SrmB- binding site of polymerase A MRY16_02930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MRY16_02935 PF02548 Ketopantoate hydroxymethyltransferase MRY16_02940 PF02569 Pantoate-beta-alanine ligase MRY16_02945 PF03668 P-loop ATPase protein family MRY16_02950 PF00381 PTS HPr component phosphorylation site MRY16_02955 PF04751 Protein of unknown function (DUF615) MRY16_02960 PF00501 AMP-binding enzyme MRY16_02960 PF13193 AMP-binding enzyme C-terminal domain MRY16_02965 PF02824 TGS domain MRY16_02965 PF03129 Anticodon binding domain MRY16_02965 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRY16_02965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRY16_02970 PF00707 Translation initiation factor IF-3, C-terminal domain MRY16_02970 PF05198 Translation initiation factor IF-3, N-terminal domain MRY16_02980 PF00043 Glutathione S-transferase, C-terminal domain MRY16_02980 PF02798 Glutathione S-transferase, N-terminal domain MRY16_02990 PF09335 SNARE associated Golgi protein MRY16_02995 PF07690 Major Facilitator Superfamily MRY16_03000 PF01632 Ribosomal protein L35 MRY16_03005 PF00453 Ribosomal protein L20 MRY16_03020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MRY16_03020 PF01409 tRNA synthetases class II core domain (F) MRY16_03025 PF03147 Ferredoxin-fold anticodon binding domain MRY16_03025 PF03483 B3/4 domain MRY16_03025 PF03484 tRNA synthetase B5 domain MRY16_03025 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MRY16_03025 PF01588 Putative tRNA binding domain MRY16_03030 PF00216 Bacterial DNA-binding protein MRY16_03040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRY16_03040 PF07498 Rho termination factor, N-terminal domain MRY16_03040 PF07497 Rho termination factor, RNA-binding domain MRY16_03045 PF00085 Thioredoxin MRY16_03050 PF02541 Ppx/GppA phosphatase family MRY16_03055 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MRY16_03060 PF01171 PP-loop family MRY16_03060 PF09179 TilS substrate binding domain MRY16_03060 PF11734 TilS substrate C-terminal domain MRY16_03065 PF03807 NADP oxidoreductase coenzyme F420-dependent MRY16_03065 PF14748 Pyrroline-5-carboxylate reductase dimerisation MRY16_03070 PF02325 YGGT family MRY16_03075 PF01367 5'-3' exonuclease, C-terminal SAM fold MRY16_03075 PF01612 3'-5' exonuclease MRY16_03075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MRY16_03075 PF00476 DNA polymerase family A MRY16_03095 PF00437 Type II/IV secretion system protein MRY16_03100 PF02566 OsmC-like protein MRY16_03110 PF00795 Carbon-nitrogen hydrolase MRY16_03155 PF00309 Sigma-54 factor, Activator interacting domain (AID) MRY16_03155 PF04963 Sigma-54 factor, core binding domain MRY16_03155 PF04552 Sigma-54, DNA binding domain MRY16_03160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MRY16_03165 PF01722 BolA-like protein MRY16_03170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MRY16_03175 PF01634 ATP phosphoribosyltransferase MRY16_03180 PF00815 Histidinol dehydrogenase MRY16_03185 PF00155 Aminotransferase class I and II MRY16_03190 PF04715 Anthranilate synthase component I, N terminal region MRY16_03190 PF00425 chorismate binding enzyme MRY16_03230 PF00293 NUDIX domain MRY16_03240 PF00814 Glycoprotease family MRY16_03245 PF02673 Bacitracin resistance protein BacA MRY16_03250 PF04445 Putative SAM-dependent methyltransferase MRY16_03260 PF00756 Putative esterase MRY16_03270 PF00834 Ribulose-phosphate 3 epimerase family MRY16_03280 PF07732 Multicopper oxidase MRY16_03280 PF00394 Multicopper oxidase MRY16_03280 PF07731 Multicopper oxidase MRY16_03300 PF00893 Small Multidrug Resistance protein MRY16_03305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MRY16_03305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MRY16_03310 PF01960 ArgJ family MRY16_03315 PF02445 Quinolinate synthetase A protein MRY16_03345 PF08378 Nuclease-related domain MRY16_03350 PF00732 GMC oxidoreductase MRY16_03350 PF05199 GMC oxidoreductase MRY16_03360 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MRY16_03365 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MRY16_03365 PF14572 Phosphoribosyl synthetase-associated domain MRY16_03380 PF00107 Zinc-binding dehydrogenase MRY16_03380 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_03390 PF00732 GMC oxidoreductase MRY16_03390 PF05199 GMC oxidoreductase MRY16_03395 PF00171 Aldehyde dehydrogenase family MRY16_03400 PF13977 BetI-type transcriptional repressor, C-terminal MRY16_03400 PF00440 Bacterial regulatory proteins, tetR family MRY16_03405 PF02028 BCCT, betaine/carnitine/choline family transporter MRY16_03425 PF06039 Malate:quinone oxidoreductase (Mqo) MRY16_03430 PF00268 Ribonucleotide reductase, small chain MRY16_03440 PF03477 ATP cone domain MRY16_03440 PF02867 Ribonucleotide reductase, barrel domain MRY16_03440 PF00317 Ribonucleotide reductase, all-alpha domain MRY16_03445 PF00072 Response regulator receiver domain MRY16_03445 PF00486 Transcriptional regulatory protein, C terminal MRY16_03450 PF00672 HAMP domain MRY16_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_03450 PF00512 His Kinase A (phospho-acceptor) domain MRY16_03460 PF00990 Diguanylate cyclase, GGDEF domain MRY16_03460 PF17158 Membrane-associated sensor, integral membrane domain MRY16_03465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MRY16_03470 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MRY16_03475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MRY16_03475 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MRY16_03485 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MRY16_03485 PF10531 SLBB domain MRY16_03485 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MRY16_03490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRY16_03490 PF00384 Molybdopterin oxidoreductase MRY16_03490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MRY16_03495 PF00146 NADH dehydrogenase MRY16_03500 PF12838 4Fe-4S dicluster domain MRY16_03505 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MRY16_03510 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MRY16_03515 PF00361 Proton-conducting membrane transporter MRY16_03515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MRY16_03520 PF00361 Proton-conducting membrane transporter MRY16_03525 PF00361 Proton-conducting membrane transporter MRY16_03540 PF00313 'Cold-shock' DNA-binding domain MRY16_03545 PF03466 LysR substrate binding domain MRY16_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_03550 PF00970 Oxidoreductase FAD-binding domain MRY16_03550 PF00175 Oxidoreductase NAD-binding domain MRY16_03565 PF05552 Conserved TM helix MRY16_03585 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_03590 PF13533 Biotin-lipoyl like MRY16_03615 PF00753 Metallo-beta-lactamase superfamily MRY16_03615 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRY16_03625 PF09334 tRNA synthetases class I (M) MRY16_03625 PF01588 Putative tRNA binding domain MRY16_03645 PF13302 Acetyltransferase (GNAT) domain MRY16_03655 PF10609 NUBPL iron-transfer P-loop NTPase MRY16_03660 PF01048 Phosphorylase superfamily MRY16_03675 PF00692 dUTPase MRY16_03705 PF01207 Dihydrouridine synthase (Dus) MRY16_03715 PF00448 SRP54-type protein, GTPase domain MRY16_03715 PF02881 SRP54-type protein, helical bundle domain MRY16_03715 PF02978 Signal peptide binding domain MRY16_03725 PF03309 Type III pantothenate kinase MRY16_03735 PF01925 Sulfite exporter TauE/SafE MRY16_03745 PF02463 RecF/RecN/SMC N terminal domain MRY16_03745 PF06470 SMC proteins Flexible Hinge Domain MRY16_03755 PF00533 BRCA1 C Terminus (BRCT) domain MRY16_03755 PF12826 Helix-hairpin-helix motif MRY16_03755 PF01653 NAD-dependent DNA ligase adenylation domain MRY16_03755 PF03120 NAD-dependent DNA ligase OB-fold domain MRY16_03755 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MRY16_03765 PF00210 Ferritin-like domain MRY16_03770 PF00578 AhpC/TSA family MRY16_03775 PF12697 Alpha/beta hydrolase family MRY16_03775 PF08241 Methyltransferase domain MRY16_03780 PF06968 Biotin and Thiamin Synthesis associated domain MRY16_03780 PF04055 Radical SAM superfamily MRY16_03780 PF00202 Aminotransferase class-III MRY16_03785 PF00155 Aminotransferase class I and II MRY16_03810 PF02472 Biopolymer transport protein ExbD/TolR MRY16_03815 PF02472 Biopolymer transport protein ExbD/TolR MRY16_03820 PF01618 MotA/TolQ/ExbB proton channel family MRY16_03830 PF00593 TonB dependent receptor MRY16_03830 PF07715 TonB-dependent Receptor Plug Domain MRY16_03835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRY16_03850 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_03855 PF12911 N-terminal TM domain of oligopeptide transport permease C MRY16_03855 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_03860 PF00005 ABC transporter MRY16_03860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRY16_03865 PF00849 RNA pseudouridylate synthase MRY16_03865 PF01479 S4 domain MRY16_03870 PF04079 Segregation and condensation complex subunit ScpB MRY16_03875 PF02616 Segregation and condensation protein ScpA MRY16_03890 PF01300 Telomere recombination MRY16_03895 PF04315 Elongation factor P hydroxylase MRY16_03900 PF02620 Large ribosomal RNA subunit accumulation protein YceD MRY16_03905 PF01783 Ribosomal L32p protein family MRY16_03910 PF00698 Acyl transferase domain MRY16_03920 PF00550 Phosphopantetheine attachment site MRY16_03925 PF04972 BON domain MRY16_03925 PF01476 LysM domain MRY16_03930 PF02581 Thiamine monophosphate synthase MRY16_03930 PF08543 Phosphomethylpyrimidine kinase MRY16_03930 PF03070 TENA/THI-4/PQQC family MRY16_03935 PF13419 Haloacid dehalogenase-like hydrolase MRY16_03940 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MRY16_03955 PF00027 Cyclic nucleotide-binding domain MRY16_03955 PF01734 Patatin-like phospholipase MRY16_03960 PF02261 Aspartate decarboxylase MRY16_03965 PF01195 Peptidyl-tRNA hydrolase MRY16_03970 PF01386 Ribosomal L25p family MRY16_03975 PF14572 Phosphoribosyl synthetase-associated domain MRY16_03975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MRY16_04000 PF08544 GHMP kinases C terminal MRY16_04000 PF00288 GHMP kinases N terminal domain MRY16_04005 PF03550 Outer membrane lipoprotein LolB MRY16_04015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MRY16_04015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MRY16_04015 PF01488 Shikimate / quinate 5-dehydrogenase MRY16_04020 PF10410 DnaB-helicase binding domain of primase MRY16_04020 PF08278 DNA primase DnaG DnaB-binding MRY16_04020 PF08275 DNA primase catalytic core, N-terminal domain MRY16_04020 PF01807 CHC2 zinc finger MRY16_04025 PF13525 Outer membrane lipoprotein MRY16_04030 PF01479 S4 domain MRY16_04030 PF00849 RNA pseudouridylate synthase MRY16_04035 PF02578 Multi-copper polyphenol oxidoreductase laccase MRY16_04040 PF03358 NADPH-dependent FMN reductase MRY16_04045 PF01668 SmpB protein MRY16_04050 PF01467 Cytidylyltransferase-like MRY16_04055 PF00037 4Fe-4S binding domain MRY16_04080 PF02540 NAD synthase MRY16_04080 PF00795 Carbon-nitrogen hydrolase MRY16_04095 PF03653 Uncharacterised protein family (UPF0093) MRY16_04100 PF00109 Beta-ketoacyl synthase, N-terminal domain MRY16_04100 PF02801 Beta-ketoacyl synthase, C-terminal domain MRY16_04105 PF12787 EcsC protein family MRY16_04110 PF00164 Ribosomal protein S12/S23 MRY16_04115 PF00177 Ribosomal protein S7p/S5e MRY16_04120 PF00679 Elongation factor G C-terminus MRY16_04120 PF14492 Elongation Factor G, domain II MRY16_04120 PF03764 Elongation factor G, domain IV MRY16_04120 PF03144 Elongation factor Tu domain 2 MRY16_04120 PF00009 Elongation factor Tu GTP binding domain MRY16_04125 PF03144 Elongation factor Tu domain 2 MRY16_04125 PF03143 Elongation factor Tu C-terminal domain MRY16_04125 PF00009 Elongation factor Tu GTP binding domain MRY16_04140 PF00583 Acetyltransferase (GNAT) family MRY16_04145 PF04377 Arginine-tRNA-protein transferase, C terminus MRY16_04145 PF04376 Arginine-tRNA-protein transferase, N terminus MRY16_04150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MRY16_04155 PF10119 Predicted methyltransferase regulatory domain MRY16_04155 PF13847 Methyltransferase domain MRY16_04160 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_04165 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MRY16_04165 PF17854 FtsK alpha domain MRY16_04165 PF09397 Ftsk gamma domain MRY16_04165 PF01580 FtsK/SpoIIIE family MRY16_04170 PF01810 LysE type translocator MRY16_04180 PF03776 Septum formation topological specificity factor MinE MRY16_04185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MRY16_04190 PF03775 Septum formation inhibitor MinC, C-terminal domain MRY16_04200 PF01553 Acyltransferase MRY16_04205 PF00691 OmpA family MRY16_04205 PF13488 Glycine zipper MRY16_04210 PF00580 UvrD/REP helicase N-terminal domain MRY16_04210 PF13361 UvrD-like helicase C-terminal domain MRY16_04215 PF00692 dUTPase MRY16_04220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRY16_04220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRY16_04220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRY16_04220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRY16_04225 PF00696 Amino acid kinase family MRY16_04235 PF13230 Glutamine amidotransferases class-II MRY16_04240 PF01814 Hemerythrin HHE cation binding domain MRY16_04250 PF03658 RnfH family Ubiquitin MRY16_04255 PF04355 SmpA / OmlA family MRY16_04260 PF01475 Ferric uptake regulator family MRY16_04265 PF00437 Type II/IV secretion system protein MRY16_04270 PF00437 Type II/IV secretion system protein MRY16_04275 PF01168 Alanine racemase, N-terminal domain MRY16_04285 PF00149 Calcineurin-like phosphoesterase MRY16_04285 PF12320 Type 5 capsule protein repressor C-terminal domain MRY16_04290 PF00378 Enoyl-CoA hydratase/isomerase MRY16_04315 PF08338 Domain of unknown function (DUF1731) MRY16_04315 PF01370 NAD dependent epimerase/dehydratase family MRY16_04320 PF01266 FAD dependent oxidoreductase MRY16_04325 PF00490 Delta-aminolevulinic acid dehydratase MRY16_04330 PF03061 Thioesterase superfamily MRY16_04335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRY16_04335 PF00529 HlyD membrane-fusion protein of T1SS MRY16_04340 PF07690 Major Facilitator Superfamily MRY16_04350 PF00376 MerR family regulatory protein MRY16_04350 PF09278 MerR, DNA binding MRY16_04355 PF00403 Heavy-metal-associated domain MRY16_04365 PF00005 ABC transporter MRY16_04390 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MRY16_04390 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MRY16_04395 PF00202 Aminotransferase class-III MRY16_04400 PF04958 Arginine N-succinyltransferase beta subunit MRY16_04405 PF00171 Aldehyde dehydrogenase family MRY16_04410 PF04996 Succinylarginine dihydrolase MRY16_04415 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MRY16_04420 PF00324 Amino acid permease MRY16_04425 PF08212 Lipocalin-like domain MRY16_04430 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MRY16_04450 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE MRY16_04460 PF07724 AAA domain (Cdc48 subfamily) MRY16_04460 PF17871 AAA lid domain MRY16_04460 PF10431 C-terminal, D2-small domain, of ClpB protein MRY16_04460 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_04470 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 MRY16_04475 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MRY16_04490 PF05947 Type VI secretion system, TssF MRY16_04505 PF14331 ImcF-related N-terminal domain MRY16_04505 PF06744 Type VI secretion protein IcmF C-terminal MRY16_04505 PF06761 Intracellular multiplication and human macrophage-killing MRY16_04515 PF00691 OmpA family MRY16_04515 PF04972 BON domain MRY16_04550 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_04555 PF03459 TOBE domain MRY16_04555 PF00005 ABC transporter MRY16_04560 PF02583 Metal-sensitive transcriptional repressor MRY16_04565 PF16916 Dimerisation domain of Zinc Transporter MRY16_04565 PF01545 Cation efflux family MRY16_04570 PF02417 Chromate transporter MRY16_04575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MRY16_04580 PF00005 ABC transporter MRY16_04585 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_04590 PF02668 Taurine catabolism dioxygenase TauD, TfdA family MRY16_04595 PF00582 Universal stress protein family MRY16_04615 PF01327 Polypeptide deformylase MRY16_04630 PF00809 Pterin binding enzyme MRY16_04630 PF02574 Homocysteine S-methyltransferase MRY16_04630 PF02607 B12 binding domain MRY16_04630 PF02310 B12 binding domain MRY16_04630 PF02965 Vitamin B12 dependent methionine synthase, activation domain MRY16_04635 PF01384 Phosphate transporter family MRY16_04645 PF18073 Rubredoxin metal binding domain MRY16_04650 PF01235 Sodium:alanine symporter family MRY16_04655 PF00324 Amino acid permease MRY16_04665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MRY16_04665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MRY16_04670 PF01678 Diaminopimelate epimerase MRY16_04680 PF01810 LysE type translocator MRY16_04685 PF00589 Phage integrase family MRY16_04685 PF02899 Phage integrase, N-terminal SAM-like domain MRY16_04690 PF01012 Electron transfer flavoprotein domain MRY16_04695 PF00766 Electron transfer flavoprotein FAD-binding domain MRY16_04695 PF01012 Electron transfer flavoprotein domain MRY16_04705 PF03989 DNA gyrase C-terminal domain, beta-propeller MRY16_04705 PF00521 DNA gyrase/topoisomerase IV, subunit A MRY16_04730 PF00266 Aminotransferase class-V MRY16_04745 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MRY16_04760 PF02687 FtsX-like permease family MRY16_04760 PF12704 MacB-like periplasmic core domain MRY16_04765 PF00005 ABC transporter MRY16_04770 PF00753 Metallo-beta-lactamase superfamily MRY16_04770 PF03772 Competence protein MRY16_04770 PF13567 Domain of unknown function (DUF4131) MRY16_04780 PF06965 Na+/H+ antiporter 1 MRY16_04780 PF01343 Peptidase family S49 MRY16_04790 PF00551 Formyl transferase MRY16_04795 PF00586 AIR synthase related protein, N-terminal domain MRY16_04795 PF02769 AIR synthase related protein, C-terminal domain MRY16_04800 PF01594 AI-2E family transporter MRY16_04805 PF08299 Bacterial dnaA protein helix-turn-helix MRY16_04805 PF00308 Bacterial dnaA protein MRY16_04805 PF11638 DnaA N-terminal domain MRY16_04835 PF00588 SpoU rRNA Methylase family MRY16_04835 PF08032 RNA 2'-O ribose methyltransferase substrate binding MRY16_04840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MRY16_04850 PF00691 OmpA family MRY16_04855 PF07676 WD40-like Beta Propeller Repeat MRY16_04855 PF04052 TolB amino-terminal domain MRY16_04865 PF02472 Biopolymer transport protein ExbD/TolR MRY16_04870 PF01618 MotA/TolQ/ExbB proton channel family MRY16_04875 PF03061 Thioesterase superfamily MRY16_04885 PF17864 RuvB AAA lid domain MRY16_04885 PF05491 RuvB C-terminal winged helix domain MRY16_04885 PF05496 Holliday junction DNA helicase RuvB P-loop domain MRY16_04890 PF07499 RuvA, C-terminal domain MRY16_04890 PF01330 RuvA N terminal domain MRY16_04900 PF01966 HD domain MRY16_04910 PF02769 AIR synthase related protein, C-terminal domain MRY16_04910 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MRY16_04910 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MRY16_04915 PF07690 Major Facilitator Superfamily MRY16_04935 PF01784 NIF3 (NGG1p interacting factor 3) MRY16_04940 PF00881 Nitroreductase family MRY16_04945 PF00378 Enoyl-CoA hydratase/isomerase MRY16_04950 PF00293 NUDIX domain MRY16_04950 PF01467 Cytidylyltransferase-like MRY16_04960 PF00043 Glutathione S-transferase, C-terminal domain MRY16_04960 PF02798 Glutathione S-transferase, N-terminal domain MRY16_04965 PF01361 Tautomerase enzyme MRY16_04985 PF00578 AhpC/TSA family MRY16_05000 PF06508 Queuosine biosynthesis protein QueC MRY16_05005 PF04055 Radical SAM superfamily MRY16_05010 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_05010 PF14602 Hexapeptide repeat of succinyl-transferase MRY16_05010 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MRY16_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_05020 PF03466 LysR substrate binding domain MRY16_05025 PF12857 TOBE-like domain MRY16_05025 PF00005 ABC transporter MRY16_05030 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_05035 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_05050 PF01063 Amino-transferase class IV MRY16_05055 PF02618 YceG-like family MRY16_05060 PF02223 Thymidylate kinase MRY16_05065 PF00890 FAD binding domain MRY16_05065 PF02910 Fumarate reductase flavoprotein C-term MRY16_05070 PF13180 PDZ domain MRY16_05080 PF03144 Elongation factor Tu domain 2 MRY16_05080 PF06421 GTP-binding protein LepA C-terminus MRY16_05080 PF00009 Elongation factor Tu GTP binding domain MRY16_05080 PF00679 Elongation factor G C-terminus MRY16_05085 PF10502 Signal peptidase, peptidase S26 MRY16_05095 PF00035 Double-stranded RNA binding motif MRY16_05095 PF14622 Ribonuclease-III-like MRY16_05100 PF07650 KH domain MRY16_05100 PF01926 50S ribosome-binding GTPase MRY16_05110 PF02565 Recombination protein O C terminal MRY16_05110 PF11967 Recombination protein O N terminal MRY16_05115 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MRY16_05120 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) MRY16_05135 PF00155 Aminotransferase class I and II MRY16_05145 PF05922 Peptidase inhibitor I9 MRY16_05145 PF00082 Subtilase family MRY16_05155 PF00106 short chain dehydrogenase MRY16_05160 PF04851 Type III restriction enzyme, res subunit MRY16_05160 PF12344 Ultra-violet resistance protein B MRY16_05160 PF02151 UvrB/uvrC motif MRY16_05160 PF00271 Helicase conserved C-terminal domain MRY16_05160 PF17757 UvrB interaction domain MRY16_05175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MRY16_05175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MRY16_05190 PF01018 GTP1/OBG MRY16_05190 PF01926 50S ribosome-binding GTPase MRY16_05195 PF00696 Amino acid kinase family MRY16_05195 PF01472 PUA domain MRY16_05205 PF07759 Protein of unknown function (DUF1615) MRY16_05210 PF01207 Dihydrouridine synthase (Dus) MRY16_05215 PF03466 LysR substrate binding domain MRY16_05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_05220 PF00561 alpha/beta hydrolase fold MRY16_05225 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_05225 PF18113 Rubredoxin binding C-terminal domain MRY16_05230 PF00301 Rubredoxin MRY16_05240 PF01336 OB-fold nucleic acid binding domain MRY16_05240 PF00152 tRNA synthetases class II (D, K and N) MRY16_05245 PF14052 Capsule assembly protein Wzi MRY16_05250 PF01507 Phosphoadenosine phosphosulfate reductase family MRY16_05255 PF00009 Elongation factor Tu GTP binding domain MRY16_05270 PF16320 Ribosomal protein L7/L12 dimerisation domain MRY16_05270 PF00542 Ribosomal protein L7/L12 C-terminal domain MRY16_05275 PF01595 Cyclin M transmembrane N-terminal domain MRY16_05275 PF03471 Transporter associated domain MRY16_05275 PF00571 CBS domain MRY16_05280 PF03466 LysR substrate binding domain MRY16_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_05285 PF00463 Isocitrate lyase family MRY16_05290 PF17185 NlpE C-terminal OB domain MRY16_05290 PF04170 NlpE N-terminal domain MRY16_05300 PF01406 tRNA synthetases class I (C) catalytic domain MRY16_05300 PF09190 DALR domain MRY16_05305 PF01380 SIS domain MRY16_05305 PF00571 CBS domain MRY16_05320 PF03968 OstA-like protein MRY16_05325 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRY16_05325 PF00005 ABC transporter MRY16_05330 PF02321 Outer membrane efflux protein MRY16_05335 PF03412 Peptidase C39 family MRY16_05335 PF00005 ABC transporter MRY16_05335 PF00664 ABC transporter transmembrane region MRY16_05345 PF01205 Uncharacterized protein family UPF0029 MRY16_05345 PF09186 Domain of unknown function (DUF1949) MRY16_05350 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_05360 PF01596 O-methyltransferase MRY16_05370 PF11953 Domain of unknown function (DUF3470) MRY16_05370 PF00037 4Fe-4S binding domain MRY16_05375 PF01624 MutS domain I MRY16_05375 PF00488 MutS domain V MRY16_05375 PF05190 MutS family domain IV MRY16_05375 PF05192 MutS domain III MRY16_05375 PF05188 MutS domain II MRY16_05385 PF00144 Beta-lactamase MRY16_05390 PF00440 Bacterial regulatory proteins, tetR family MRY16_05395 PF03583 Secretory lipase MRY16_05405 PF12833 Helix-turn-helix domain MRY16_05405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRY16_05430 PF00005 ABC transporter MRY16_05435 PF02705 K+ potassium transporter MRY16_05440 PF03741 Integral membrane protein TerC family MRY16_05440 PF03471 Transporter associated domain MRY16_05445 PF01098 Cell cycle protein MRY16_05460 PF00293 NUDIX domain MRY16_05460 PF09297 NADH pyrophosphatase zinc ribbon domain MRY16_05465 PF00672 HAMP domain MRY16_05465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_05465 PF00512 His Kinase A (phospho-acceptor) domain MRY16_05470 PF00486 Transcriptional regulatory protein, C terminal MRY16_05470 PF00072 Response regulator receiver domain MRY16_05480 PF00576 HIUase/Transthyretin family MRY16_05495 PF00717 Peptidase S24-like MRY16_05500 PF00817 impB/mucB/samB family MRY16_05500 PF13438 Domain of unknown function (DUF4113) MRY16_05500 PF11798 IMS family HHH motif MRY16_05500 PF11799 impB/mucB/samB family C-terminal domain MRY16_05515 PF12706 Beta-lactamase superfamily domain MRY16_05525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRY16_05525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRY16_05530 PF01553 Acyltransferase MRY16_05535 PF01435 Peptidase family M48 MRY16_05550 PF09424 Yqey-like protein MRY16_05555 PF01165 Ribosomal protein S21 MRY16_05560 PF00814 Glycoprotease family MRY16_05570 PF00892 EamA-like transporter family MRY16_05590 PF03793 PASTA domain MRY16_05590 PF00069 Protein kinase domain MRY16_05615 PF09339 IclR helix-turn-helix domain MRY16_05615 PF01614 Bacterial transcriptional regulator MRY16_05620 PF00355 Rieske [2Fe-2S] domain MRY16_05630 PF00355 Rieske [2Fe-2S] domain MRY16_05640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRY16_05645 PF14759 Reductase C-terminal MRY16_05645 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_05650 PF07690 Major Facilitator Superfamily MRY16_05660 PF12697 Alpha/beta hydrolase family MRY16_05670 PF01958 Domain of unknown function DUF108 MRY16_05670 PF03447 Homoserine dehydrogenase, NAD binding domain MRY16_05675 PF00171 Aldehyde dehydrogenase family MRY16_05680 PF00205 Thiamine pyrophosphate enzyme, central domain MRY16_05680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRY16_05680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRY16_05690 PF01638 HxlR-like helix-turn-helix MRY16_05700 PF00106 short chain dehydrogenase MRY16_05700 PF00561 alpha/beta hydrolase fold MRY16_05715 PF00206 Lyase MRY16_05715 PF08328 Adenylosuccinate lyase C-terminal MRY16_05720 PF04356 Protein of unknown function (DUF489) MRY16_05730 PF00293 NUDIX domain MRY16_05740 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_05745 PF07943 Penicillin-binding protein 5, C-terminal domain MRY16_05745 PF00768 D-alanyl-D-alanine carboxypeptidase MRY16_05760 PF01975 Survival protein SurE MRY16_05765 PF01551 Peptidase family M23 MRY16_05765 PF01476 LysM domain MRY16_05770 PF03466 LysR substrate binding domain MRY16_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_05775 PF05362 Lon protease (S16) C-terminal proteolytic domain MRY16_05775 PF13654 AAA domain MRY16_05780 PF07690 Major Facilitator Superfamily MRY16_05785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRY16_05790 PF13593 SBF-like CPA transporter family (DUF4137) MRY16_05795 PF01197 Ribosomal protein L31 MRY16_05810 PF04055 Radical SAM superfamily MRY16_05815 PF01132 Elongation factor P (EF-P) OB domain MRY16_05815 PF08207 Elongation factor P (EF-P) KOW-like domain MRY16_05815 PF09285 Elongation factor P, C-terminal MRY16_05820 PF02554 Carbon starvation protein CstA MRY16_05820 PF13722 5TM C-terminal transporter carbon starvation CstA MRY16_05825 PF04328 Selenoprotein, putative MRY16_05830 PF17863 AAA lid domain MRY16_05830 PF07726 ATPase family associated with various cellular activities (AAA) MRY16_05840 PF01841 Transglutaminase-like superfamily MRY16_05840 PF13559 Domain of unknown function (DUF4129) MRY16_05840 PF11992 Domain of unknown function (DUF3488) MRY16_05860 PF17954 Quercetinase C-terminal cupin domain MRY16_05860 PF02678 Pirin MRY16_05865 PF00764 Arginosuccinate synthase MRY16_05870 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_05870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRY16_05880 PF12833 Helix-turn-helix domain MRY16_05880 PF06719 AraC-type transcriptional regulator N-terminus MRY16_05885 PF07690 Major Facilitator Superfamily MRY16_05895 PF12146 Serine aminopeptidase, S33 MRY16_05900 PF00108 Thiolase, N-terminal domain MRY16_05900 PF02803 Thiolase, C-terminal domain MRY16_05905 PF01144 Coenzyme A transferase MRY16_05910 PF01144 Coenzyme A transferase MRY16_05915 PF00775 Dioxygenase MRY16_05915 PF04444 Catechol dioxygenase N terminus MRY16_05920 PF02426 Muconolactone delta-isomerase MRY16_05925 PF13378 Enolase C-terminal domain-like MRY16_05925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRY16_05930 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_05930 PF00175 Oxidoreductase NAD-binding domain MRY16_05930 PF00970 Oxidoreductase FAD-binding domain MRY16_05935 PF00866 Ring hydroxylating beta subunit MRY16_05940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MRY16_05940 PF00355 Rieske [2Fe-2S] domain MRY16_05970 PF01979 Amidohydrolase family MRY16_05975 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_05975 PF00101 Ribulose bisphosphate carboxylase, small chain MRY16_05980 PF01502 Phosphoribosyl-AMP cyclohydrolase MRY16_05985 PF02649 Type I GTP cyclohydrolase folE2 MRY16_06000 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRY16_06000 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRY16_06005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_06005 PF09317 Domain of unknown function (DUF1974) MRY16_06005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_06005 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_06010 PF13185 GAF domain MRY16_06010 PF02954 Bacterial regulatory protein, Fis family MRY16_06010 PF00158 Sigma-54 interaction domain MRY16_06015 PF00753 Metallo-beta-lactamase superfamily MRY16_06025 PF01925 Sulfite exporter TauE/SafE MRY16_06055 PF13649 Methyltransferase domain MRY16_06060 PF00512 His Kinase A (phospho-acceptor) domain MRY16_06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_06060 PF08521 Two-component sensor kinase N-terminal MRY16_06065 PF00486 Transcriptional regulatory protein, C terminal MRY16_06065 PF00072 Response regulator receiver domain MRY16_06085 PF00155 Aminotransferase class I and II MRY16_06090 PF02080 TrkA-C domain MRY16_06090 PF06826 Predicted Permease Membrane Region MRY16_06095 PF13018 Extended Signal Peptide of Type V secretion system MRY16_06095 PF03895 YadA-like membrane anchor domain MRY16_06095 PF05658 Head domain of trimeric autotransporter adhesin MRY16_06095 PF05662 Coiled stalk of trimeric autotransporter adhesin MRY16_06095 PF13018 Extended Signal Peptide of Type V secretion system MRY16_06095 PF03895 YadA-like membrane anchor domain MRY16_06095 PF05658 Head domain of trimeric autotransporter adhesin MRY16_06095 PF05662 Coiled stalk of trimeric autotransporter adhesin MRY16_06100 PF00691 OmpA family MRY16_06100 PF04355 SmpA / OmlA family MRY16_06105 PF09339 IclR helix-turn-helix domain MRY16_06105 PF01614 Bacterial transcriptional regulator MRY16_06110 PF01144 Coenzyme A transferase MRY16_06115 PF01144 Coenzyme A transferase MRY16_06120 PF02803 Thiolase, C-terminal domain MRY16_06120 PF00108 Thiolase, N-terminal domain MRY16_06125 PF10397 Adenylosuccinate lyase C-terminus MRY16_06125 PF00206 Lyase MRY16_06130 PF00561 alpha/beta hydrolase fold MRY16_06135 PF07690 Major Facilitator Superfamily MRY16_06140 PF02627 Carboxymuconolactone decarboxylase family MRY16_06145 PF00775 Dioxygenase MRY16_06145 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal MRY16_06150 PF00775 Dioxygenase MRY16_06155 PF01487 Type I 3-dehydroquinase MRY16_06160 PF05048 Periplasmic copper-binding protein (NosD) MRY16_06165 PF04966 Carbohydrate-selective porin, OprB family MRY16_06170 PF01011 PQQ enzyme repeat MRY16_06170 PF13360 PQQ-like domain MRY16_06180 PF00576 HIUase/Transthyretin family MRY16_06185 PF00860 Permease family MRY16_06195 PF01494 FAD binding domain MRY16_06200 PF00392 Bacterial regulatory proteins, gntR family MRY16_06200 PF07729 FCD domain MRY16_06205 PF03561 Allantoicase repeat MRY16_06210 PF04115 Ureidoglycolate lyase MRY16_06225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_06225 PF03466 LysR substrate binding domain MRY16_06230 PF00355 Rieske [2Fe-2S] domain MRY16_06235 PF07702 UTRA domain MRY16_06235 PF00392 Bacterial regulatory proteins, gntR family MRY16_06240 PF05962 HutD MRY16_06245 PF01175 Urocanase Rossmann-like domain MRY16_06245 PF17392 Urocanase C-terminal domain MRY16_06245 PF17391 Urocanase N-terminal domain MRY16_06250 PF00221 Aromatic amino acid lyase MRY16_06255 PF00324 Amino acid permease MRY16_06260 PF01979 Amidohydrolase family MRY16_06265 PF00491 Arginase family MRY16_06270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MRY16_06270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MRY16_06285 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRY16_06285 PF12833 Helix-turn-helix domain MRY16_06290 PF00155 Aminotransferase class I and II MRY16_06290 PF00392 Bacterial regulatory proteins, gntR family MRY16_06305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRY16_06305 PF12833 Helix-turn-helix domain MRY16_06320 PF00384 Molybdopterin oxidoreductase MRY16_06325 PF02634 FdhD/NarQ family MRY16_06330 PF00440 Bacterial regulatory proteins, tetR family MRY16_06330 PF17932 Tetracyclin repressor-like, C-terminal domain MRY16_06345 PF00106 short chain dehydrogenase MRY16_06350 PF00743 Flavin-binding monooxygenase-like MRY16_06355 PF04072 Leucine carboxyl methyltransferase MRY16_06360 PF03746 LamB/YcsF family MRY16_06365 PF02682 Carboxyltransferase domain, subdomain C and D MRY16_06370 PF00289 Biotin carboxylase, N-terminal domain MRY16_06370 PF00364 Biotin-requiring enzyme MRY16_06370 PF02785 Biotin carboxylase C-terminal domain MRY16_06370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_06375 PF01435 Peptidase family M48 MRY16_06380 PF13545 Crp-like helix-turn-helix domain MRY16_06380 PF00027 Cyclic nucleotide-binding domain MRY16_06385 PF02566 OsmC-like protein MRY16_06395 PF10431 C-terminal, D2-small domain, of ClpB protein MRY16_06395 PF02861 Clp amino terminal domain, pathogenicity island component MRY16_06395 PF17871 AAA lid domain MRY16_06395 PF07724 AAA domain (Cdc48 subfamily) MRY16_06395 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_06405 PF02926 THUMP domain MRY16_06405 PF10672 S-adenosylmethionine-dependent methyltransferase MRY16_06405 PF01170 Putative RNA methylase family UPF0020 MRY16_06415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MRY16_06415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MRY16_06420 PF01979 Amidohydrolase family MRY16_06435 PF02390 Putative methyltransferase MRY16_06445 PF00043 Glutathione S-transferase, C-terminal domain MRY16_06445 PF02798 Glutathione S-transferase, N-terminal domain MRY16_06455 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_06455 PF13192 Thioredoxin domain MRY16_06475 PF00487 Fatty acid desaturase MRY16_06485 PF10417 C-terminal domain of 1-Cys peroxiredoxin MRY16_06485 PF00578 AhpC/TSA family MRY16_06495 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MRY16_06495 PF00271 Helicase conserved C-terminal domain MRY16_06495 PF11898 Domain of unknown function (DUF3418) MRY16_06495 PF04408 Helicase associated domain (HA2) MRY16_06495 PF00270 DEAD/DEAH box helicase MRY16_06500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MRY16_06500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MRY16_06510 PF04055 Radical SAM superfamily MRY16_06515 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_06515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRY16_06530 PF03330 Lytic transglycolase MRY16_06530 PF05036 Sporulation related domain MRY16_06535 PF13406 Transglycosylase SLT domain MRY16_06540 PF01098 Cell cycle protein MRY16_06550 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term MRY16_06550 PF14489 QueF-like protein MRY16_06555 PF01061 ABC-2 type transporter MRY16_06560 PF00005 ABC transporter MRY16_06565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_06565 PF03466 LysR substrate binding domain MRY16_06575 PF01979 Amidohydrolase family MRY16_06575 PF13382 Adenine deaminase C-terminal domain MRY16_06585 PF04966 Carbohydrate-selective porin, OprB family MRY16_06595 PF06736 Protein of unknown function (DUF1211) MRY16_06635 PF00464 Serine hydroxymethyltransferase MRY16_06640 PF00037 4Fe-4S binding domain MRY16_06645 PF01136 Peptidase family U32 MRY16_06645 PF16325 Peptidase family U32 C-terminal domain MRY16_06655 PF05360 yiaA/B two helix domain MRY16_06660 PF00472 RF-1 domain MRY16_06660 PF03462 PCRF domain MRY16_06665 PF17827 PrmC N-terminal domain MRY16_06665 PF13847 Methyltransferase domain MRY16_06670 PF04299 Putative FMN-binding domain MRY16_06675 PF02311 AraC-like ligand binding domain MRY16_06675 PF12833 Helix-turn-helix domain MRY16_06680 PF00106 short chain dehydrogenase MRY16_06685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MRY16_06685 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MRY16_06690 PF01613 Flavin reductase like domain MRY16_06700 PF00561 alpha/beta hydrolase fold MRY16_06705 PF03280 Proteobacterial lipase chaperone protein MRY16_06710 PF00561 alpha/beta hydrolase fold MRY16_06715 PF00899 ThiF family MRY16_06720 PF03109 ABC1 family MRY16_06725 PF02152 Dihydroneopterin aldolase MRY16_06745 PF03232 Ubiquinone biosynthesis protein COQ7 MRY16_06750 PF07690 Major Facilitator Superfamily MRY16_06755 PF17243 POTRA domain TamA domain 1 MRY16_06755 PF01103 Surface antigen MRY16_06755 PF07244 Surface antigen variable number repeat MRY16_06775 PF00330 Aconitase family (aconitate hydratase) MRY16_06775 PF11791 Aconitate B N-terminal domain MRY16_06775 PF06434 Aconitate hydratase 2 N-terminus MRY16_06790 PF00939 Sodium:sulfate symporter transmembrane region MRY16_06795 PF00520 Ion transport protein MRY16_06795 PF00027 Cyclic nucleotide-binding domain MRY16_06805 PF09997 Predicted membrane protein (DUF2238) MRY16_06810 PF07690 Major Facilitator Superfamily MRY16_06815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_06815 PF03466 LysR substrate binding domain MRY16_06820 PF04284 Protein of unknown function (DUF441) MRY16_06835 PF00970 Oxidoreductase FAD-binding domain MRY16_06835 PF00175 Oxidoreductase NAD-binding domain MRY16_06840 PF01980 tRNA-methyltransferase O MRY16_06840 PF18389 TrmO C-terminal domain MRY16_06850 PF00437 Type II/IV secretion system protein MRY16_06850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MRY16_06860 PF00072 Response regulator receiver domain MRY16_06860 PF00486 Transcriptional regulatory protein, C terminal MRY16_06865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_06865 PF00512 His Kinase A (phospho-acceptor) domain MRY16_06865 PF08521 Two-component sensor kinase N-terminal MRY16_06875 PF00293 NUDIX domain MRY16_06885 PF00912 Transglycosylase MRY16_06885 PF00905 Penicillin binding protein transpeptidase domain MRY16_06885 PF14814 Bifunctional transglycosylase second domain MRY16_06890 PF01513 ATP-NAD kinase MRY16_06895 PF07023 Protein of unknown function (DUF1315) MRY16_06900 PF04717 Type VI secretion system, phage-baseplate injector MRY16_06900 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) MRY16_06900 PF13296 Putative type VI secretion system Rhs element Vgr MRY16_06930 PF02885 Glycosyl transferase family, helical bundle domain MRY16_06930 PF00591 Glycosyl transferase family, a/b domain MRY16_06935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_06935 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_06935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_06945 PF01842 ACT domain MRY16_06945 PF00800 Prephenate dehydratase MRY16_06945 PF01817 Chorismate mutase type II MRY16_06950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MRY16_06960 PF03781 Sulfatase-modifying factor enzyme 1 MRY16_06965 PF07687 Peptidase dimerisation domain MRY16_06965 PF01546 Peptidase family M20/M25/M40 MRY16_06970 PF01137 RNA 3'-terminal phosphate cyclase MRY16_06970 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain MRY16_06985 PF01139 tRNA-splicing ligase RtcB MRY16_06990 PF00753 Metallo-beta-lactamase superfamily MRY16_07000 PF06956 Regulator of RNA terminal phosphate cyclase MRY16_07000 PF00158 Sigma-54 interaction domain MRY16_07015 PF03883 Peroxide stress protein YaaA MRY16_07035 PF05690 Thiazole biosynthesis protein ThiG MRY16_07050 PF04542 Sigma-70 region 2 MRY16_07050 PF04545 Sigma-70, region 4 MRY16_07050 PF00140 Sigma-70 factor, region 1.2 MRY16_07060 PF00313 'Cold-shock' DNA-binding domain MRY16_07065 PF00270 DEAD/DEAH box helicase MRY16_07065 PF00271 Helicase conserved C-terminal domain MRY16_07070 PF01116 Fructose-bisphosphate aldolase class-II MRY16_07075 PF00639 PPIC-type PPIASE domain MRY16_07075 PF09312 SurA N-terminal domain MRY16_07080 PF04453 LPS transport system D MRY16_07080 PF03968 OstA-like protein MRY16_07085 PF01636 Phosphotransferase enzyme family MRY16_07090 PF00483 Nucleotidyl transferase MRY16_07095 PF02527 rRNA small subunit methyltransferase G MRY16_07100 PF13614 AAA domain MRY16_07105 PF17762 HTH domain found in ParB protein MRY16_07105 PF02195 ParB-like nuclease domain MRY16_07110 PF01618 MotA/TolQ/ExbB proton channel family MRY16_07120 PF00664 ABC transporter transmembrane region MRY16_07120 PF00005 ABC transporter MRY16_07125 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MRY16_07130 PF02348 Cytidylyltransferase MRY16_07135 PF09115 DNA polymerase III, delta subunit, C terminal MRY16_07145 PF01026 TatD related DNase MRY16_07155 PF07963 Prokaryotic N-terminal methylation motif MRY16_07155 PF12019 Type II transport protein GspH MRY16_07165 PF07963 Prokaryotic N-terminal methylation motif MRY16_07165 PF11612 Type II secretion system (T2SS), protein J MRY16_07170 PF03934 Type II secretion system (T2SS), protein K MRY16_07180 PF03167 Uracil DNA glycosylase superfamily MRY16_07190 PF14437 MafB19-like deaminase MRY16_07200 PF02224 Cytidylate kinase MRY16_07205 PF00575 S1 RNA binding domain MRY16_07210 PF00216 Bacterial DNA-binding protein MRY16_07225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MRY16_07235 PF00743 Flavin-binding monooxygenase-like MRY16_07245 PF03969 AFG1-like ATPase MRY16_07250 PF01274 Malate synthase MRY16_07280 PF05525 Branched-chain amino acid transport protein MRY16_07285 PF00557 Metallopeptidase family M24 MRY16_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_07290 PF03466 LysR substrate binding domain MRY16_07295 PF13291 ACT domain MRY16_07295 PF04607 Region found in RelA / SpoT proteins MRY16_07295 PF02824 TGS domain MRY16_07305 PF00462 Glutaredoxin MRY16_07310 PF00202 Aminotransferase class-III MRY16_07315 PF01380 SIS domain MRY16_07315 PF00571 CBS domain MRY16_07340 PF00448 SRP54-type protein, GTPase domain MRY16_07340 PF02881 SRP54-type protein, helical bundle domain MRY16_07350 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) MRY16_07365 PF08173 Membrane bound YbgT-like protein MRY16_07370 PF02322 Cytochrome bd terminal oxidase subunit II MRY16_07375 PF01654 Cytochrome bd terminal oxidase subunit I MRY16_07395 PF00294 pfkB family carbohydrate kinase MRY16_07400 PF08367 Peptidase M16C associated MRY16_07400 PF00675 Insulinase (Peptidase family M16) MRY16_07400 PF05193 Peptidase M16 inactive domain MRY16_07405 PF02253 Phospholipase A1 MRY16_07415 PF02386 Cation transport protein MRY16_07420 PF02254 TrkA-N domain MRY16_07420 PF02080 TrkA-C domain MRY16_07425 PF00585 C-terminal regulatory domain of Threonine dehydratase MRY16_07425 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_07430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MRY16_07445 PF01118 Semialdehyde dehydrogenase, NAD binding domain MRY16_07445 PF02774 Semialdehyde dehydrogenase, dimerisation domain MRY16_07455 PF02617 ATP-dependent Clp protease adaptor protein ClpS MRY16_07465 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_07465 PF07724 AAA domain (Cdc48 subfamily) MRY16_07465 PF17871 AAA lid domain MRY16_07465 PF02861 Clp amino terminal domain, pathogenicity island component MRY16_07465 PF10431 C-terminal, D2-small domain, of ClpB protein MRY16_07470 PF02694 Uncharacterised BCR, YnfA/UPF0060 family MRY16_07475 PF12848 ABC transporter MRY16_07475 PF00005 ABC transporter MRY16_07480 PF00793 DAHP synthetase I family MRY16_07485 PF12697 Alpha/beta hydrolase family MRY16_07495 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_07495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRY16_07525 PF06418 CTP synthase N-terminus MRY16_07525 PF00117 Glutamine amidotransferase class-I MRY16_07530 PF00793 DAHP synthetase I family MRY16_07535 PF00113 Enolase, C-terminal TIM barrel domain MRY16_07535 PF03952 Enolase, N-terminal domain MRY16_07540 PF04977 Septum formation initiator MRY16_07545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MRY16_07555 PF04143 Sulphur transport MRY16_07565 PF00753 Metallo-beta-lactamase superfamily MRY16_07580 PF13091 PLD-like domain MRY16_07585 PF00107 Zinc-binding dehydrogenase MRY16_07585 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_07590 PF01425 Amidase MRY16_07595 PF00289 Biotin carboxylase, N-terminal domain MRY16_07595 PF00364 Biotin-requiring enzyme MRY16_07595 PF02785 Biotin carboxylase C-terminal domain MRY16_07595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_07600 PF00392 Bacterial regulatory proteins, gntR family MRY16_07600 PF07729 FCD domain MRY16_07610 PF06719 AraC-type transcriptional regulator N-terminus MRY16_07610 PF12833 Helix-turn-helix domain MRY16_07615 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_07615 PF00107 Zinc-binding dehydrogenase MRY16_07620 PF01965 DJ-1/PfpI family MRY16_07625 PF02558 Ketopantoate reductase PanE/ApbA MRY16_07625 PF08546 Ketopantoate reductase PanE/ApbA C terminal MRY16_07635 PF00171 Aldehyde dehydrogenase family MRY16_07645 PF00465 Iron-containing alcohol dehydrogenase MRY16_07655 PF07690 Major Facilitator Superfamily MRY16_07660 PF12146 Serine aminopeptidase, S33 MRY16_07665 PF00108 Thiolase, N-terminal domain MRY16_07665 PF02803 Thiolase, C-terminal domain MRY16_07670 PF01144 Coenzyme A transferase MRY16_07675 PF01144 Coenzyme A transferase MRY16_07680 PF03594 Benzoate membrane transport protein MRY16_07685 PF00106 short chain dehydrogenase MRY16_07690 PF00970 Oxidoreductase FAD-binding domain MRY16_07690 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_07690 PF00175 Oxidoreductase NAD-binding domain MRY16_07695 PF00866 Ring hydroxylating beta subunit MRY16_07700 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MRY16_07700 PF00355 Rieske [2Fe-2S] domain MRY16_07705 PF00775 Dioxygenase MRY16_07705 PF04444 Catechol dioxygenase N terminus MRY16_07710 PF02426 Muconolactone delta-isomerase MRY16_07715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRY16_07715 PF13378 Enolase C-terminal domain-like MRY16_07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_07720 PF03466 LysR substrate binding domain MRY16_07730 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding MRY16_07730 PF18381 YcaO cyclodehydratase C-terminal domain MRY16_07740 PF00106 short chain dehydrogenase MRY16_07755 PF00289 Biotin carboxylase, N-terminal domain MRY16_07755 PF02785 Biotin carboxylase C-terminal domain MRY16_07755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_07765 PF01402 Ribbon-helix-helix protein, copG family MRY16_07765 PF08753 NikR C terminal nickel binding domain MRY16_07770 PF09084 NMT1/THI5 like MRY16_07775 PF00005 ABC transporter MRY16_07780 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_07800 PF03466 LysR substrate binding domain MRY16_07805 PF00682 HMGL-like MRY16_07810 PF02785 Biotin carboxylase C-terminal domain MRY16_07810 PF00289 Biotin carboxylase, N-terminal domain MRY16_07810 PF00364 Biotin-requiring enzyme MRY16_07810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_07810 PF18140 Propionyl-coenzyme A carboxylase BT domain MRY16_07815 PF00378 Enoyl-CoA hydratase/isomerase MRY16_07820 PF01039 Carboxyl transferase domain MRY16_07825 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_07825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_07825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_07830 PF00440 Bacterial regulatory proteins, tetR family MRY16_07835 PF00501 AMP-binding enzyme MRY16_07835 PF13193 AMP-binding enzyme C-terminal domain MRY16_07850 PF07690 Major Facilitator Superfamily MRY16_07855 PF02803 Thiolase, C-terminal domain MRY16_07855 PF00108 Thiolase, N-terminal domain MRY16_07860 PF01144 Coenzyme A transferase MRY16_07865 PF01144 Coenzyme A transferase MRY16_07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_07870 PF03466 LysR substrate binding domain MRY16_07880 PF00593 TonB dependent receptor MRY16_07880 PF07715 TonB-dependent Receptor Plug Domain MRY16_07890 PF01717 Cobalamin-independent synthase, Catalytic domain MRY16_07890 PF08267 Cobalamin-independent synthase, N-terminal domain MRY16_07895 PF01613 Flavin reductase like domain MRY16_07900 PF01925 Sulfite exporter TauE/SafE MRY16_07920 PF09905 DNA-binding protein VF530 MRY16_07955 PF01381 Helix-turn-helix MRY16_07965 PF00145 C-5 cytosine-specific DNA methylase MRY16_07965 PF01381 Helix-turn-helix MRY16_07970 PF07728 AAA domain (dynein-related subfamily) MRY16_07985 PF12833 Helix-turn-helix domain MRY16_07990 PF02525 Flavodoxin-like fold MRY16_08000 PF00990 Diguanylate cyclase, GGDEF domain MRY16_08005 PF01264 Chorismate synthase MRY16_08010 PF05175 Methyltransferase small domain MRY16_08015 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_08025 PF01434 Peptidase family M41 MRY16_08025 PF17862 AAA+ lid domain MRY16_08025 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_08035 PF05166 YcgL domain MRY16_08040 PF01612 3'-5' exonuclease MRY16_08040 PF00570 HRDC domain MRY16_08045 PF02132 RecR protein MRY16_08045 PF13662 Toprim domain MRY16_08050 PF02575 YbaB/EbfC DNA-binding family MRY16_08055 PF01053 Cys/Met metabolism PLP-dependent enzyme MRY16_08065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRY16_08065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRY16_08075 PF01230 HIT domain MRY16_08100 PF02684 Lipid-A-disaccharide synthetase MRY16_08120 PF01925 Sulfite exporter TauE/SafE MRY16_08125 PF00793 DAHP synthetase I family MRY16_08135 PF07715 TonB-dependent Receptor Plug Domain MRY16_08135 PF00593 TonB dependent receptor MRY16_08145 PF02654 Cobalamin-5-phosphate synthase MRY16_08150 PF00300 Histidine phosphatase superfamily (branch 1) MRY16_08155 PF02277 Phosphoribosyltransferase MRY16_08160 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase MRY16_08170 PF13419 Haloacid dehalogenase-like hydrolase MRY16_08180 PF07715 TonB-dependent Receptor Plug Domain MRY16_08180 PF00593 TonB dependent receptor MRY16_08185 PF07690 Major Facilitator Superfamily MRY16_08200 PF04183 IucA / IucC family MRY16_08200 PF06276 Ferric iron reductase FhuF-like transporter MRY16_08205 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MRY16_08210 PF04183 IucA / IucC family MRY16_08210 PF06276 Ferric iron reductase FhuF-like transporter MRY16_08215 PF04073 Aminoacyl-tRNA editing domain MRY16_08225 PF03109 ABC1 family MRY16_08230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_08230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_08230 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_08235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_08235 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_08235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_08240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRY16_08240 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_08245 PF00487 Fatty acid desaturase MRY16_08250 PF12833 Helix-turn-helix domain MRY16_08250 PF12852 Cupin MRY16_08255 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_08255 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MRY16_08260 PF07977 FabA-like domain MRY16_08265 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_08265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MRY16_08275 PF01103 Surface antigen MRY16_08275 PF07244 Surface antigen variable number repeat MRY16_08280 PF02163 Peptidase family M50 MRY16_08280 PF17820 PDZ domain MRY16_08280 PF13180 PDZ domain MRY16_08285 PF13288 DXP reductoisomerase C-terminal domain MRY16_08285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MRY16_08285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MRY16_08295 PF01255 Putative undecaprenyl diphosphate synthase MRY16_08300 PF01765 Ribosome recycling factor MRY16_08305 PF00696 Amino acid kinase family MRY16_08310 PF00919 Uncharacterized protein family UPF0004 MRY16_08310 PF18693 TRAM domain MRY16_08310 PF04055 Radical SAM superfamily MRY16_08315 PF00512 His Kinase A (phospho-acceptor) domain MRY16_08315 PF00989 PAS fold MRY16_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_08320 PF02954 Bacterial regulatory protein, Fis family MRY16_08320 PF00072 Response regulator receiver domain MRY16_08320 PF00158 Sigma-54 interaction domain MRY16_08325 PF00440 Bacterial regulatory proteins, tetR family MRY16_08330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MRY16_08330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MRY16_08340 PF02542 YgbB family MRY16_08350 PF01266 FAD dependent oxidoreductase MRY16_08360 PF10415 Fumarase C C-terminus MRY16_08360 PF00206 Lyase MRY16_08365 PF16363 GDP-mannose 4,6 dehydratase MRY16_08370 PF02635 DsrE/DsrF-like family MRY16_08390 PF00892 EamA-like transporter family MRY16_08395 PF00155 Aminotransferase class I and II MRY16_08395 PF00392 Bacterial regulatory proteins, gntR family MRY16_08400 PF01638 HxlR-like helix-turn-helix MRY16_08405 PF00994 Probable molybdopterin binding domain MRY16_08405 PF03454 MoeA C-terminal region (domain IV) MRY16_08405 PF03453 MoeA N-terminal region (domain I and II) MRY16_08410 PF01967 MoaC family MRY16_08410 PF00994 Probable molybdopterin binding domain MRY16_08415 PF02391 MoaE protein MRY16_08425 PF06463 Molybdenum Cofactor Synthesis C MRY16_08425 PF04055 Radical SAM superfamily MRY16_08430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRY16_08430 PF00384 Molybdopterin oxidoreductase MRY16_08430 PF01568 Molydopterin dinucleotide binding domain MRY16_08435 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_08440 PF12804 MobA-like NTP transferase domain MRY16_08445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRY16_08445 PF00384 Molybdopterin oxidoreductase MRY16_08445 PF01568 Molydopterin dinucleotide binding domain MRY16_08445 PF04324 BFD-like [2Fe-2S] binding domain MRY16_08450 PF04324 BFD-like [2Fe-2S] binding domain MRY16_08450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRY16_08450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRY16_08450 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_08450 PF18267 Rubredoxin NAD+ reductase C-terminal domain MRY16_08455 PF04324 BFD-like [2Fe-2S] binding domain MRY16_08455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRY16_08455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRY16_08455 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_08455 PF13806 Rieske-like [2Fe-2S] domain MRY16_08455 PF18267 Rubredoxin NAD+ reductase C-terminal domain MRY16_08460 PF07690 Major Facilitator Superfamily MRY16_08470 PF00005 ABC transporter MRY16_08475 PF01220 Dehydroquinase class II MRY16_08480 PF00364 Biotin-requiring enzyme MRY16_08485 PF02785 Biotin carboxylase C-terminal domain MRY16_08485 PF00289 Biotin carboxylase, N-terminal domain MRY16_08485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_08495 PF01425 Amidase MRY16_08500 PF12832 MFS_1 like family MRY16_08505 PF00324 Amino acid permease MRY16_08515 PF02798 Glutathione S-transferase, N-terminal domain MRY16_08515 PF14497 Glutathione S-transferase, C-terminal domain MRY16_08530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRY16_08535 PF01645 Conserved region in glutamate synthase MRY16_08565 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MRY16_08565 PF01565 FAD binding domain MRY16_08570 PF01451 Low molecular weight phosphotyrosine protein phosphatase MRY16_08575 PF00465 Iron-containing alcohol dehydrogenase MRY16_08580 PF03061 Thioesterase superfamily MRY16_08585 PF12170 DNA polymerase III tau subunit V interacting with alpha MRY16_08585 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MRY16_08585 PF12169 DNA polymerase III subunits gamma and tau domain III MRY16_08590 PF08007 Cupin superfamily protein MRY16_08620 PF01740 STAS domain MRY16_08620 PF00916 Sulfate permease family MRY16_08625 PF00375 Sodium:dicarboxylate symporter family MRY16_08635 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) MRY16_08640 PF00924 Mechanosensitive ion channel MRY16_08655 PF00664 ABC transporter transmembrane region MRY16_08655 PF00005 ABC transporter MRY16_08665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRY16_08665 PF12833 Helix-turn-helix domain MRY16_08670 PF01597 Glycine cleavage H-protein MRY16_08675 PF00474 Sodium:solute symporter family MRY16_08680 PF01037 Lrp/AsnC ligand binding domain MRY16_08685 PF00171 Aldehyde dehydrogenase family MRY16_08685 PF01619 Proline dehydrogenase MRY16_08685 PF14850 DNA-binding domain of Proline dehydrogenase MRY16_08685 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MRY16_08690 PF05958 tRNA (Uracil-5-)-methyltransferase MRY16_08700 PF09992 Phosphodiester glycosidase MRY16_08710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRY16_08715 PF09857 Putative toxin of bacterial toxin-antitoxin pair MRY16_08725 PF04264 YceI-like domain MRY16_08735 PF02779 Transketolase, pyrimidine binding domain MRY16_08735 PF02780 Transketolase, C-terminal domain MRY16_08735 PF00456 Transketolase, thiamine diphosphate binding domain MRY16_08740 PF02772 S-adenosylmethionine synthetase, central domain MRY16_08740 PF00438 S-adenosylmethionine synthetase, N-terminal domain MRY16_08740 PF02773 S-adenosylmethionine synthetase, C-terminal domain MRY16_08770 PF00313 'Cold-shock' DNA-binding domain MRY16_08785 PF02075 Crossover junction endodeoxyribonuclease RuvC MRY16_08790 PF01256 Carbohydrate kinase MRY16_08790 PF03853 YjeF-related protein N-terminus MRY16_08795 PF08331 Domain of unknown function (DUF1730) MRY16_08800 PF06968 Biotin and Thiamin Synthesis associated domain MRY16_08800 PF04055 Radical SAM superfamily MRY16_08815 PF16970 Type-1 fimbrial protein, A MRY16_08820 PF02753 Pili assembly chaperone PapD, C-terminal domain MRY16_08820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain MRY16_08825 PF13954 PapC N-terminal domain MRY16_08825 PF00577 Outer membrane usher protein MRY16_08825 PF13953 PapC C-terminal domain MRY16_08830 PF00419 Fimbrial protein MRY16_09005 PF04860 Phage portal protein MRY16_09010 PF03354 Phage Terminase MRY16_09030 PF01381 Helix-turn-helix MRY16_09090 PF01726 LexA DNA binding domain MRY16_09090 PF00717 Peptidase S24-like MRY16_09105 PF02086 D12 class N6 adenine-specific DNA methyltransferase MRY16_09120 PF01979 Amidohydrolase family MRY16_09125 PF00199 Catalase MRY16_09130 PF03279 Bacterial lipid A biosynthesis acyltransferase MRY16_09140 PF00313 'Cold-shock' DNA-binding domain MRY16_09150 PF00959 Phage lysozyme MRY16_09155 PF01553 Acyltransferase MRY16_09160 PF01709 Transcriptional regulator MRY16_09175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MRY16_09175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_09185 PF00296 Luciferase-like monooxygenase MRY16_09190 PF03180 NLPA lipoprotein MRY16_09195 PF09383 NIL domain MRY16_09195 PF00005 ABC transporter MRY16_09200 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_09205 PF01926 50S ribosome-binding GTPase MRY16_09205 PF06071 Protein of unknown function (DUF933) MRY16_09220 PF00027 Cyclic nucleotide-binding domain MRY16_09220 PF13545 Crp-like helix-turn-helix domain MRY16_09230 PF02222 ATP-grasp domain MRY16_09235 PF08335 GlnD PII-uridylyltransferase MRY16_09235 PF01966 HD domain MRY16_09235 PF01909 Nucleotidyltransferase domain MRY16_09240 PF00155 Aminotransferase class I and II MRY16_09250 PF01037 Lrp/AsnC ligand binding domain MRY16_09255 PF13533 Biotin-lipoyl like MRY16_09260 PF00873 AcrB/AcrD/AcrF family MRY16_09265 PF00255 Glutathione peroxidase MRY16_09270 PF01641 SelR domain MRY16_09275 PF00155 Aminotransferase class I and II MRY16_09285 PF00710 Asparaginase, N-terminal MRY16_09285 PF17763 Glutaminase/Asparaginase C-terminal domain MRY16_09290 PF07733 Bacterial DNA polymerase III alpha NTPase domain MRY16_09290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MRY16_09290 PF14579 Helix-hairpin-helix motif MRY16_09290 PF02811 PHP domain MRY16_09290 PF01336 OB-fold nucleic acid binding domain MRY16_09295 PF00588 SpoU rRNA Methylase family MRY16_09300 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_09310 PF00561 alpha/beta hydrolase fold MRY16_09310 PF08386 TAP-like protein MRY16_09315 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_09315 PF13192 Thioredoxin domain MRY16_09325 PF05816 Toxic anion resistance protein (TelA) MRY16_09350 PF02673 Bacitracin resistance protein BacA MRY16_09360 PF00156 Phosphoribosyl transferase domain MRY16_09365 PF02674 Colicin V production protein MRY16_09370 PF01180 Dihydroorotate dehydrogenase MRY16_09390 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MRY16_09390 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MRY16_09395 PF00881 Nitroreductase family MRY16_09410 PF00162 Phosphoglycerate kinase MRY16_09420 PF02545 Maf-like protein MRY16_09425 PF07690 Major Facilitator Superfamily MRY16_09455 PF01575 MaoC like domain MRY16_09465 PF02803 Thiolase, C-terminal domain MRY16_09465 PF00108 Thiolase, N-terminal domain MRY16_09480 PF03737 Aldolase/RraA MRY16_09485 PF13460 NAD(P)H-binding MRY16_09490 PF01649 Ribosomal protein S20 MRY16_09495 PF00041 Fibronectin type III domain MRY16_09495 PF12561 ToxR activated gene A lipoprotein domain MRY16_09505 PF00459 Inositol monophosphatase family MRY16_09510 PF13419 Haloacid dehalogenase-like hydrolase MRY16_09515 PF01479 S4 domain MRY16_09520 PF00154 recA bacterial DNA recombination protein MRY16_09525 PF02631 RecX family MRY16_09545 PF00216 Bacterial DNA-binding protein MRY16_09560 PF02082 Transcriptional regulator MRY16_09565 PF00266 Aminotransferase class-V MRY16_09570 PF01592 NifU-like N terminal domain MRY16_09575 PF01521 Iron-sulphur cluster biosynthesis MRY16_09580 PF00226 DnaJ domain MRY16_09580 PF07743 HSCB C-terminal oligomerisation domain MRY16_09585 PF00012 Hsp70 protein MRY16_09590 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_09595 PF00211 Adenylate and Guanylate cyclase catalytic domain MRY16_09605 PF03461 TRCF domain MRY16_09605 PF17757 UvrB interaction domain MRY16_09605 PF00271 Helicase conserved C-terminal domain MRY16_09605 PF02559 CarD-like/TRCF domain MRY16_09605 PF00270 DEAD/DEAH box helicase MRY16_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_09615 PF03466 LysR substrate binding domain MRY16_09620 PF00923 Transaldolase/Fructose-6-phosphate aldolase MRY16_09625 PF01810 LysE type translocator MRY16_09630 PF03594 Benzoate membrane transport protein MRY16_09635 PF02254 TrkA-N domain MRY16_09635 PF00999 Sodium/hydrogen exchanger family MRY16_09650 PF03313 Serine dehydratase alpha chain MRY16_09650 PF03315 Serine dehydratase beta chain MRY16_09655 PF11940 Domain of unknown function (DUF3458) Ig-like fold MRY16_09655 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MRY16_09655 PF01433 Peptidase family M1 domain MRY16_09680 PF02110 Hydroxyethylthiazole kinase family MRY16_09690 PF14493 Helix-turn-helix domain MRY16_09690 PF05970 PIF1-like helicase MRY16_09700 PF13520 Amino acid permease MRY16_09705 PF06751 Ethanolamine ammonia lyase large subunit (EutB) MRY16_09710 PF05985 Ethanolamine ammonia-lyase light chain (EutC) MRY16_09715 PF13302 Acetyltransferase (GNAT) domain MRY16_09720 PF00117 Glutamine amidotransferase class-I MRY16_09720 PF00958 GMP synthase C terminal domain MRY16_09720 PF02540 NAD synthase MRY16_09725 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRY16_09725 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MRY16_09730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRY16_09735 PF00149 Calcineurin-like phosphoesterase MRY16_09740 PF00881 Nitroreductase family MRY16_09750 PF17209 Hfq protein MRY16_09760 PF08676 MutL C terminal dimerisation domain MRY16_09760 PF01119 DNA mismatch repair protein, C-terminal domain MRY16_09765 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MRY16_09775 PF00849 RNA pseudouridylate synthase MRY16_09775 PF01479 S4 domain MRY16_09785 PF00583 Acetyltransferase (GNAT) family MRY16_09790 PF00849 RNA pseudouridylate synthase MRY16_09790 PF01479 S4 domain MRY16_09800 PF00296 Luciferase-like monooxygenase MRY16_09810 PF03618 Kinase/pyrophosphorylase MRY16_09815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MRY16_09815 PF02896 PEP-utilising enzyme, TIM barrel domain MRY16_09815 PF00391 PEP-utilising enzyme, mobile domain MRY16_09825 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MRY16_09825 PF06481 COX Aromatic Rich Motif MRY16_09830 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRY16_09835 PF00510 Cytochrome c oxidase subunit III MRY16_09840 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MRY16_09845 PF01040 UbiA prenyltransferase family MRY16_09860 PF01250 Ribosomal protein S6 MRY16_09865 PF01084 Ribosomal protein S18 MRY16_09870 PF01281 Ribosomal protein L9, N-terminal domain MRY16_09870 PF03948 Ribosomal protein L9, C-terminal domain MRY16_09875 PF00772 DnaB-like helicase N terminal domain MRY16_09875 PF03796 DnaB-like helicase C terminal domain MRY16_09880 PF00842 Alanine racemase, C-terminal domain MRY16_09880 PF01168 Alanine racemase, N-terminal domain MRY16_09890 PF08379 Bacterial transglutaminase-like N-terminal region MRY16_09890 PF01841 Transglutaminase-like superfamily MRY16_09900 PF14403 Circularly permuted ATP-grasp type 2 MRY16_09915 PF00709 Adenylosuccinate synthetase MRY16_09920 PF13393 Histidyl-tRNA synthetase MRY16_09935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MRY16_09935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MRY16_09940 PF02272 DHHA1 domain MRY16_09940 PF01411 tRNA synthetases class II (A) MRY16_09940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRY16_09945 PF00696 Amino acid kinase family MRY16_09945 PF01842 ACT domain MRY16_09945 PF13840 ACT domain MRY16_09950 PF02599 Global regulator protein family MRY16_09955 PF01351 Ribonuclease HII MRY16_09970 PF01292 Prokaryotic cytochrome b561 MRY16_09975 PF00962 Adenosine/AMP deaminase MRY16_09980 PF00860 Permease family MRY16_09990 PF00593 TonB dependent receptor MRY16_09990 PF07715 TonB-dependent Receptor Plug Domain MRY16_10000 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRY16_10000 PF12833 Helix-turn-helix domain MRY16_10010 PF00893 Small Multidrug Resistance protein MRY16_10015 PF01134 Glucose inhibited division protein A MRY16_10015 PF13932 GidA associated domain MRY16_10035 PF02954 Bacterial regulatory protein, Fis family MRY16_10040 PF01808 AICARFT/IMPCHase bienzyme MRY16_10040 PF02142 MGS-like domain MRY16_10045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MRY16_10045 PF02843 Phosphoribosylglycinamide synthetase, C domain MRY16_10045 PF02844 Phosphoribosylglycinamide synthetase, N domain MRY16_10050 PF03180 NLPA lipoprotein MRY16_10055 PF00005 ABC transporter MRY16_10055 PF09383 NIL domain MRY16_10060 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_10075 PF00753 Metallo-beta-lactamase superfamily MRY16_10075 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRY16_10085 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MRY16_10085 PF05221 S-adenosyl-L-homocysteine hydrolase MRY16_10090 PF02219 Methylenetetrahydrofolate reductase MRY16_10095 PF04452 RNA methyltransferase MRY16_10100 PF00563 EAL domain MRY16_10100 PF00990 Diguanylate cyclase, GGDEF domain MRY16_10100 PF03707 Bacterial signalling protein N terminal repeat MRY16_10105 PF00390 Malic enzyme, N-terminal domain MRY16_10105 PF03949 Malic enzyme, NAD binding domain MRY16_10105 PF01515 Phosphate acetyl/butaryl transferase MRY16_10110 PF01743 Poly A polymerase head domain MRY16_10110 PF12627 Probable RNA and SrmB- binding site of polymerase A MRY16_10115 PF00889 Elongation factor TS MRY16_10120 PF00318 Ribosomal protein S2 MRY16_10125 PF00557 Metallopeptidase family M24 MRY16_10135 PF07690 Major Facilitator Superfamily MRY16_10145 PF13180 PDZ domain MRY16_10145 PF17820 PDZ domain MRY16_10150 PF01784 NIF3 (NGG1p interacting factor 3) MRY16_10155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MRY16_10155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MRY16_10190 PF01040 UbiA prenyltransferase family MRY16_10195 PF04345 Chorismate lyase MRY16_10200 PF00120 Glutamine synthetase, catalytic domain MRY16_10200 PF03951 Glutamine synthetase, beta-Grasp domain MRY16_10205 PF00117 Glutamine amidotransferase class-I MRY16_10210 PF00375 Sodium:dicarboxylate symporter family MRY16_10215 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_10215 PF03473 MOSC domain MRY16_10215 PF03476 MOSC N-terminal beta barrel domain MRY16_10220 PF02885 Glycosyl transferase family, helical bundle domain MRY16_10220 PF00591 Glycosyl transferase family, a/b domain MRY16_10225 PF00218 Indole-3-glycerol phosphate synthase MRY16_10240 PF01227 GTP cyclohydrolase I MRY16_10260 PF05675 Protein of unknown function (DUF817) MRY16_10265 PF01208 Uroporphyrinogen decarboxylase (URO-D) MRY16_10275 PF00360 Phytochrome region MRY16_10275 PF00563 EAL domain MRY16_10275 PF01590 GAF domain MRY16_10275 PF00990 Diguanylate cyclase, GGDEF domain MRY16_10280 PF01979 Amidohydrolase family MRY16_10285 PF00929 Exonuclease MRY16_10295 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_10295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRY16_10300 PF00005 ABC transporter MRY16_10300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRY16_10305 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_10305 PF12911 N-terminal TM domain of oligopeptide transport permease C MRY16_10310 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_10315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRY16_10320 PF01464 Transglycosylase SLT domain MRY16_10320 PF01476 LysM domain MRY16_10325 PF00929 Exonuclease MRY16_10335 PF09297 NADH pyrophosphatase zinc ribbon domain MRY16_10335 PF00293 NUDIX domain MRY16_10345 PF04972 BON domain MRY16_10350 PF02021 Uncharacterised protein family UPF0102 MRY16_10360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRY16_10370 PF13411 MerR HTH family regulatory protein MRY16_10380 PF01494 FAD binding domain MRY16_10385 PF01494 FAD binding domain MRY16_10390 PF05195 Aminopeptidase P, N-terminal domain MRY16_10390 PF00557 Metallopeptidase family M24 MRY16_10425 PF05762 VWA domain containing CoxE-like protein MRY16_10435 PF07728 AAA domain (dynein-related subfamily) MRY16_10440 PF13569 Domain of unknown function (DUF4132) MRY16_10445 PF00691 OmpA family MRY16_10445 PF04355 SmpA / OmlA family MRY16_10450 PF05658 Head domain of trimeric autotransporter adhesin MRY16_10450 PF05662 Coiled stalk of trimeric autotransporter adhesin MRY16_10450 PF03895 YadA-like membrane anchor domain MRY16_10450 PF13018 Extended Signal Peptide of Type V secretion system MRY16_10450 PF05662 Coiled stalk of trimeric autotransporter adhesin MRY16_10450 PF03895 YadA-like membrane anchor domain MRY16_10450 PF13018 Extended Signal Peptide of Type V secretion system MRY16_10450 PF05658 Head domain of trimeric autotransporter adhesin MRY16_10455 PF01812 5-formyltetrahydrofolate cyclo-ligase family MRY16_10460 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRY16_10460 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_10460 PF05362 Lon protease (S16) C-terminal proteolytic domain MRY16_10465 PF02590 Predicted SPOUT methyltransferase MRY16_10470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MRY16_10480 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MRY16_10480 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MRY16_10485 PF04060 Putative Fe-S cluster MRY16_10490 PF10576 Iron-sulfur binding domain of endonuclease III MRY16_10490 PF00633 Helix-hairpin-helix motif MRY16_10490 PF00730 HhH-GPD superfamily base excision DNA repair protein MRY16_10500 PF05191 Adenylate kinase, active site lid MRY16_10515 PF00905 Penicillin binding protein transpeptidase domain MRY16_10515 PF03717 Penicillin-binding Protein dimerisation domain MRY16_10540 PF17961 Bacterial Ig domain MRY16_10540 PF00746 LPXTG cell wall anchor motif MRY16_10540 PF17210 SdrD B-like domain MRY16_10540 PF04650 YSIRK type signal peptide MRY16_10540 PF10425 C-terminus of bacterial fibrinogen-binding adhesin MRY16_10545 PF01343 Peptidase family S49 MRY16_10545 PF08496 Peptidase family S49 N-terminal MRY16_10550 PF00005 ABC transporter MRY16_10555 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_10560 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_10570 PF00355 Rieske [2Fe-2S] domain MRY16_10575 PF00282 Pyridoxal-dependent decarboxylase conserved domain MRY16_10580 PF00202 Aminotransferase class-III MRY16_10590 PF00440 Bacterial regulatory proteins, tetR family MRY16_10600 PF00487 Fatty acid desaturase MRY16_10605 PF00970 Oxidoreductase FAD-binding domain MRY16_10605 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_10605 PF00175 Oxidoreductase NAD-binding domain MRY16_10610 PF00440 Bacterial regulatory proteins, tetR family MRY16_10620 PF00210 Ferritin-like domain MRY16_10625 PF12137 RNA polymerase recycling family C-terminal MRY16_10625 PF00176 SNF2 family N-terminal domain MRY16_10625 PF18339 RapA N-terminal Tudor like domain 1 MRY16_10625 PF18337 RapA N-terminal Tudor like domain MRY16_10625 PF00271 Helicase conserved C-terminal domain MRY16_10630 PF00849 RNA pseudouridylate synthase MRY16_10635 PF00202 Aminotransferase class-III MRY16_10640 PF02581 Thiamine monophosphate synthase MRY16_10665 PF01699 Sodium/calcium exchanger protein MRY16_10670 PF00675 Insulinase (Peptidase family M16) MRY16_10670 PF05193 Peptidase M16 inactive domain MRY16_10675 PF02567 Phenazine biosynthesis-like protein MRY16_10680 PF00180 Isocitrate/isopropylmalate dehydrogenase MRY16_10685 PF00849 RNA pseudouridylate synthase MRY16_10695 PF03971 Monomeric isocitrate dehydrogenase MRY16_10705 PF07943 Penicillin-binding protein 5, C-terminal domain MRY16_10705 PF00768 D-alanyl-D-alanine carboxypeptidase MRY16_10710 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_10715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_10720 PF03441 FAD binding domain of DNA photolyase MRY16_10720 PF00875 DNA photolyase MRY16_10750 PF02350 UDP-N-acetylglucosamine 2-epimerase MRY16_10770 PF01654 Cytochrome bd terminal oxidase subunit I MRY16_10775 PF02322 Cytochrome bd terminal oxidase subunit II MRY16_10780 PF03060 Nitronate monooxygenase MRY16_10785 PF13090 Polyphosphate kinase C-terminal domain 2 MRY16_10785 PF02503 Polyphosphate kinase middle domain MRY16_10785 PF17941 Polyphosphate kinase C-terminal domain 1 MRY16_10785 PF13089 Polyphosphate kinase N-terminal domain MRY16_10790 PF00912 Transglycosylase MRY16_10795 PF01694 Rhomboid family MRY16_10805 PF00005 ABC transporter MRY16_10810 PF13472 GDSL-like Lipase/Acylhydrolase family MRY16_10815 PF00484 Carbonic anhydrase MRY16_10820 PF00561 alpha/beta hydrolase fold MRY16_10830 PF07715 TonB-dependent Receptor Plug Domain MRY16_10830 PF00593 TonB dependent receptor MRY16_10835 PF01521 Iron-sulphur cluster biosynthesis MRY16_10835 PF01106 NifU-like domain MRY16_10855 PF00152 tRNA synthetases class II (D, K and N) MRY16_10860 PF11890 Domain of unknown function (DUF3410) MRY16_10860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRY16_10860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRY16_10865 PF01219 Prokaryotic diacylglycerol kinase MRY16_10875 PF00118 TCP-1/cpn60 chaperonin family MRY16_10880 PF00166 Chaperonin 10 Kd subunit MRY16_10895 PF00781 Diacylglycerol kinase catalytic domain MRY16_10900 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain MRY16_10900 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain MRY16_10905 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MRY16_10905 PF01266 FAD dependent oxidoreductase MRY16_10910 PF08220 DeoR-like helix-turn-helix domain MRY16_10910 PF00455 DeoR C terminal sensor domain MRY16_10915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRY16_10915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRY16_10925 PF14542 GCN5-related N-acetyl-transferase MRY16_10935 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MRY16_10935 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MRY16_10950 PF09423 PhoD-like phosphatase MRY16_10950 PF16655 PhoD-like phosphatase, N-terminal domain MRY16_10965 PF00535 Glycosyl transferase family 2 MRY16_10970 PF14883 Hypothetical glycosyl hydrolase family 13 MRY16_10970 PF01522 Polysaccharide deacetylase MRY16_10980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_10985 PF07152 YaeQ protein MRY16_10990 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRY16_10990 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRY16_11000 PF03061 Thioesterase superfamily MRY16_11010 PF10415 Fumarase C C-terminus MRY16_11010 PF00206 Lyase MRY16_11015 PF03466 LysR substrate binding domain MRY16_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_11020 PF00375 Sodium:dicarboxylate symporter family MRY16_11030 PF01272 Transcription elongation factor, GreA/GreB, C-term MRY16_11030 PF03449 Transcription elongation factor, N-terminal MRY16_11035 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRY16_11035 PF01464 Transglycosylase SLT domain MRY16_11045 PF01171 PP-loop family MRY16_11050 PF01464 Transglycosylase SLT domain MRY16_11055 PF01435 Peptidase family M48 MRY16_11065 PF00571 CBS domain MRY16_11065 PF01769 Divalent cation transporter MRY16_11065 PF03448 MgtE intracellular N domain MRY16_11070 PF00873 AcrB/AcrD/AcrF family MRY16_11075 PF00884 Sulfatase MRY16_11080 PF03009 Glycerophosphoryl diester phosphodiesterase family MRY16_11085 PF04973 Nicotinamide mononucleotide transporter MRY16_11105 PF12450 von Willebrand factor MRY16_11105 PF12034 Domain of unknown function (DUF3520) MRY16_11105 PF00092 von Willebrand factor type A domain MRY16_11110 PF00809 Pterin binding enzyme MRY16_11115 PF06480 FtsH Extracellular MRY16_11115 PF01434 Peptidase family M41 MRY16_11115 PF17862 AAA+ lid domain MRY16_11115 PF00004 ATPase family associated with various cellular activities (AAA) MRY16_11120 PF01728 FtsJ-like methyltransferase MRY16_11125 PF01985 CRS1 / YhbY (CRM) domain MRY16_11140 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MRY16_11140 PF00117 Glutamine amidotransferase class-I MRY16_11145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_11145 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MRY16_11145 PF02142 MGS-like domain MRY16_11150 PF01272 Transcription elongation factor, GreA/GreB, C-term MRY16_11150 PF03449 Transcription elongation factor, N-terminal MRY16_11155 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_11160 PF00582 Universal stress protein family MRY16_11180 PF09587 Bacterial capsule synthesis protein PGA_cap MRY16_11195 PF00999 Sodium/hydrogen exchanger family MRY16_11200 PF04228 Putative neutral zinc metallopeptidase MRY16_11205 PF05661 Protein of unknown function (DUF808) MRY16_11210 PF00579 tRNA synthetases class I (W and Y) MRY16_11215 PF07290 Protein of unknown function (DUF1449) MRY16_11220 PF01145 SPFH domain / Band 7 family MRY16_11220 PF15975 Flotillin MRY16_11230 PF00535 Glycosyl transferase family 2 MRY16_11235 PF14883 Hypothetical glycosyl hydrolase family 13 MRY16_11235 PF01522 Polysaccharide deacetylase MRY16_11245 PF02629 CoA binding domain MRY16_11245 PF00549 CoA-ligase MRY16_11250 PF08442 ATP-grasp domain MRY16_11250 PF00549 CoA-ligase MRY16_11255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRY16_11255 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_11260 PF00364 Biotin-requiring enzyme MRY16_11260 PF02817 e3 binding domain MRY16_11260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRY16_11265 PF16078 2-oxoglutarate dehydrogenase N-terminus MRY16_11265 PF00676 Dehydrogenase E1 component MRY16_11265 PF16870 2-oxoglutarate dehydrogenase C-terminal MRY16_11265 PF02779 Transketolase, pyrimidine binding domain MRY16_11270 PF13085 2Fe-2S iron-sulfur cluster binding domain MRY16_11275 PF00890 FAD binding domain MRY16_11275 PF02910 Fumarate reductase flavoprotein C-term MRY16_11280 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MRY16_11285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MRY16_11290 PF00285 Citrate synthase, C-terminal domain MRY16_11310 PF00581 Rhodanese-like domain MRY16_11310 PF17773 UPF0176 acylphosphatase like domain MRY16_11315 PF09335 SNARE associated Golgi protein MRY16_11320 PF05724 Thiopurine S-methyltransferase (TPMT) MRY16_11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_11330 PF03466 LysR substrate binding domain MRY16_11350 PF04542 Sigma-70 region 2 MRY16_11350 PF04546 Sigma-70, non-essential region MRY16_11350 PF04545 Sigma-70, region 4 MRY16_11350 PF03979 Sigma-70 factor, region 1.1 MRY16_11350 PF00140 Sigma-70 factor, region 1.2 MRY16_11350 PF04539 Sigma-70 region 3 MRY16_11355 PF04359 Protein of unknown function (DUF493) MRY16_11365 PF03099 Biotin/lipoate A/B protein ligase family MRY16_11375 PF00465 Iron-containing alcohol dehydrogenase MRY16_11380 PF13520 Amino acid permease MRY16_11385 PF03358 NADPH-dependent FMN reductase MRY16_11395 PF00588 SpoU rRNA Methylase family MRY16_11400 PF14824 Sirohaem biosynthesis protein central MRY16_11400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRY16_11400 PF10414 Sirohaem synthase dimerisation region MRY16_11405 PF02403 Seryl-tRNA synthetase N-terminal domain MRY16_11405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRY16_11415 PF03548 Outer membrane lipoprotein carrier protein LolA MRY16_11420 PF02678 Pirin MRY16_11420 PF05726 Pirin C-terminal cupin domain MRY16_11425 PF01016 Ribosomal L27 protein MRY16_11430 PF00829 Ribosomal prokaryotic L21 protein MRY16_11435 PF00348 Polyprenyl synthetase MRY16_11445 PF01569 PAP2 superfamily MRY16_11450 PF00529 HlyD membrane-fusion protein of T1SS MRY16_11450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRY16_11455 PF00873 AcrB/AcrD/AcrF family MRY16_11460 PF02321 Outer membrane efflux protein MRY16_11465 PF01906 Putative heavy-metal-binding MRY16_11470 PF01906 Putative heavy-metal-binding MRY16_11495 PF08264 Anticodon-binding domain of tRNA MRY16_11495 PF00133 tRNA synthetases class I (I, L, M and V) MRY16_11495 PF10458 Valyl tRNA synthetase tRNA binding arm MRY16_11515 PF00909 Ammonium Transporter Family MRY16_11530 PF00512 His Kinase A (phospho-acceptor) domain MRY16_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_11530 PF08521 Two-component sensor kinase N-terminal MRY16_11535 PF00072 Response regulator receiver domain MRY16_11535 PF00486 Transcriptional regulatory protein, C terminal MRY16_11540 PF00884 Sulfatase MRY16_11540 PF08019 Phosphoethanolamine transferase EptA/EptB MRY16_11560 PF01734 Patatin-like phospholipase MRY16_11570 PF01145 SPFH domain / Band 7 family MRY16_11575 PF12823 Domain of unknown function (DUF3817) MRY16_11580 PF00348 Polyprenyl synthetase MRY16_11585 PF04303 PrpF protein MRY16_11590 PF00324 Amino acid permease MRY16_11605 PF00120 Glutamine synthetase, catalytic domain MRY16_11610 PF01569 PAP2 superfamily MRY16_11620 PF03600 Citrate transporter MRY16_11625 PF00171 Aldehyde dehydrogenase family MRY16_11630 PF00072 Response regulator receiver domain MRY16_11630 PF00486 Transcriptional regulatory protein, C terminal MRY16_11635 PF13493 Domain of unknown function (DUF4118) MRY16_11635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_11635 PF00512 His Kinase A (phospho-acceptor) domain MRY16_11635 PF02702 Osmosensitive K+ channel His kinase sensor domain MRY16_11640 PF02669 K+-transporting ATPase, c chain MRY16_11650 PF03814 Potassium-transporting ATPase A subunit MRY16_11670 PF01507 Phosphoadenosine phosphosulfate reductase family MRY16_11675 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain MRY16_11675 PF06974 Protein of unknown function (DUF1298) MRY16_11685 PF10150 Ribonuclease E/G family MRY16_11685 PF00575 S1 RNA binding domain MRY16_11690 PF02545 Maf-like protein MRY16_11700 PF04085 rod shape-determining protein MreC MRY16_11710 PF02686 Glu-tRNAGln amidotransferase C subunit MRY16_11715 PF01425 Amidase MRY16_11720 PF02637 GatB domain MRY16_11720 PF02934 GatB/GatE catalytic domain MRY16_11760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_11760 PF03466 LysR substrate binding domain MRY16_11775 PF05992 SbmA/BacA-like family MRY16_11780 PF01734 Patatin-like phospholipase MRY16_11785 PF01235 Sodium:alanine symporter family MRY16_11790 PF03616 Sodium/glutamate symporter MRY16_11800 PF00881 Nitroreductase family MRY16_11805 PF07690 Major Facilitator Superfamily MRY16_11810 PF12805 FUSC-like inner membrane protein yccS MRY16_11820 PF00667 FAD binding domain MRY16_11820 PF00258 Flavodoxin MRY16_11820 PF00175 Oxidoreductase NAD-binding domain MRY16_11865 PF17969 L,D-transpeptidase C-terminal domain MRY16_11865 PF03734 L,D-transpeptidase catalytic domain MRY16_11870 PF04304 Protein of unknown function (DUF454) MRY16_11880 PF08085 Entericidin EcnA/B family MRY16_11885 PF07687 Peptidase dimerisation domain MRY16_11885 PF01546 Peptidase family M20/M25/M40 MRY16_11895 PF01584 CheW-like domain MRY16_11895 PF01627 Hpt domain MRY16_11895 PF07194 P2 response regulator binding domain MRY16_11895 PF02895 Signal transducing histidine kinase, homodimeric domain MRY16_11895 PF01584 CheW-like domain MRY16_11895 PF07194 P2 response regulator binding domain MRY16_11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_11895 PF02895 Signal transducing histidine kinase, homodimeric domain MRY16_11895 PF01627 Hpt domain MRY16_11900 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term MRY16_11900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRY16_11905 PF01584 CheW-like domain MRY16_11910 PF00072 Response regulator receiver domain MRY16_11915 PF00072 Response regulator receiver domain MRY16_11925 PF03129 Anticodon binding domain MRY16_11925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRY16_11925 PF04073 Aminoacyl-tRNA editing domain MRY16_11930 PF07411 Domain of unknown function (DUF1508) MRY16_11935 PF03831 PhnA domain MRY16_11935 PF08274 PhnA Zinc-Ribbon MRY16_11940 PF04343 Protein of unknown function, DUF488 MRY16_11950 PF01571 Aminomethyltransferase folate-binding domain MRY16_11960 PF07715 TonB-dependent Receptor Plug Domain MRY16_11960 PF00593 TonB dependent receptor MRY16_11965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MRY16_11965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MRY16_11965 PF06827 Zinc finger found in FPG and IleRS MRY16_11970 PF00639 PPIC-type PPIASE domain MRY16_11970 PF09312 SurA N-terminal domain MRY16_11980 PF01741 Large-conductance mechanosensitive channel, MscL MRY16_11985 PF00679 Elongation factor G C-terminus MRY16_11985 PF00009 Elongation factor Tu GTP binding domain MRY16_11985 PF03144 Elongation factor Tu domain 2 MRY16_11990 PF00860 Permease family MRY16_11995 PF05175 Methyltransferase small domain MRY16_11995 PF08468 Methyltransferase small domain N-terminal MRY16_12000 PF00324 Amino acid permease MRY16_12005 PF01139 tRNA-splicing ligase RtcB MRY16_12015 PF00691 OmpA family MRY16_12015 PF13505 Outer membrane protein beta-barrel domain MRY16_12025 PF00108 Thiolase, N-terminal domain MRY16_12025 PF02803 Thiolase, C-terminal domain MRY16_12035 PF00893 Small Multidrug Resistance protein MRY16_12045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRY16_12045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRY16_12050 PF01011 PQQ enzyme repeat MRY16_12055 PF04966 Carbohydrate-selective porin, OprB family MRY16_12060 PF02515 CoA-transferase family III MRY16_12065 PF02311 AraC-like ligand binding domain MRY16_12065 PF12833 Helix-turn-helix domain MRY16_12080 PF02803 Thiolase, C-terminal domain MRY16_12080 PF00108 Thiolase, N-terminal domain MRY16_12085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRY16_12085 PF00378 Enoyl-CoA hydratase/isomerase MRY16_12085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRY16_12115 PF03006 Haemolysin-III related MRY16_12120 PF07690 Major Facilitator Superfamily MRY16_12120 PF00083 Sugar (and other) transporter MRY16_12135 PF07517 SecA DEAD-like domain MRY16_12135 PF02810 SEC-C motif MRY16_12135 PF01043 SecA preprotein cross-linking domain MRY16_12135 PF07516 SecA Wing and Scaffold domain MRY16_12140 PF10417 C-terminal domain of 1-Cys peroxiredoxin MRY16_12140 PF00578 AhpC/TSA family MRY16_12145 PF00753 Metallo-beta-lactamase superfamily MRY16_12165 PF02875 Mur ligase family, glutamate ligase domain MRY16_12165 PF08245 Mur ligase middle domain MRY16_12170 PF01039 Carboxyl transferase domain MRY16_12175 PF00290 Tryptophan synthase alpha chain MRY16_12200 PF00149 Calcineurin-like phosphoesterase MRY16_12210 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_12215 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MRY16_12220 PF07715 TonB-dependent Receptor Plug Domain MRY16_12220 PF00593 TonB dependent receptor MRY16_12225 PF01923 Cobalamin adenosyltransferase MRY16_12245 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MRY16_12260 PF00486 Transcriptional regulatory protein, C terminal MRY16_12260 PF00072 Response regulator receiver domain MRY16_12265 PF00512 His Kinase A (phospho-acceptor) domain MRY16_12265 PF00672 HAMP domain MRY16_12265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_12275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_12275 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_12275 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRY16_12275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_12280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_12280 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRY16_12280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_12280 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_12315 PF06146 Phosphate-starvation-inducible E MRY16_12340 PF00593 TonB dependent receptor MRY16_12340 PF07715 TonB-dependent Receptor Plug Domain MRY16_12350 PF01336 OB-fold nucleic acid binding domain MRY16_12350 PF02938 GAD domain MRY16_12350 PF00152 tRNA synthetases class II (D, K and N) MRY16_12380 PF01757 Acyltransferase family MRY16_12395 PF17103 Stealth protein CR4, conserved region 4 MRY16_12395 PF11380 Stealth protein CR2, conserved region 2 MRY16_12395 PF17101 Stealth protein CR1, conserved region 1 MRY16_12395 PF17102 Stealth protein CR3, conserved region 3 MRY16_12405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRY16_12405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRY16_12405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRY16_12410 PF01063 Amino-transferase class IV MRY16_12415 PF08335 GlnD PII-uridylyltransferase MRY16_12415 PF03710 Glutamate-ammonia ligase adenylyltransferase MRY16_12420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_12420 PF00512 His Kinase A (phospho-acceptor) domain MRY16_12420 PF00072 Response regulator receiver domain MRY16_12420 PF09456 RcsC Alpha-Beta-Loop (ABL) MRY16_12430 PF02547 Queuosine biosynthesis protein MRY16_12445 PF01702 Queuine tRNA-ribosyltransferase MRY16_12450 PF02699 Preprotein translocase subunit MRY16_12455 PF13721 SecD export protein N-terminal TM region MRY16_12455 PF02355 Protein export membrane protein MRY16_12455 PF07549 SecD/SecF GG Motif MRY16_12460 PF07549 SecD/SecF GG Motif MRY16_12460 PF02355 Protein export membrane protein MRY16_12470 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MRY16_12470 PF01926 50S ribosome-binding GTPase MRY16_12475 PF13360 PQQ-like domain MRY16_12485 PF03129 Anticodon binding domain MRY16_12485 PF13393 Histidyl-tRNA synthetase MRY16_12490 PF04551 GcpE protein MRY16_12505 PF04055 Radical SAM superfamily MRY16_12510 PF00334 Nucleoside diphosphate kinase MRY16_12515 PF04384 Iron-sulphur cluster assembly MRY16_12520 PF01569 PAP2 superfamily MRY16_12525 PF13439 Glycosyltransferase Family 4 MRY16_12525 PF00534 Glycosyl transferases group 1 MRY16_12530 PF00149 Calcineurin-like phosphoesterase MRY16_12535 PF00398 Ribosomal RNA adenine dimethylase MRY16_12540 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MRY16_12550 PF00572 Ribosomal protein L13 MRY16_12555 PF00380 Ribosomal protein S9/S16 MRY16_12560 PF00043 Glutathione S-transferase, C-terminal domain MRY16_12560 PF02798 Glutathione S-transferase, N-terminal domain MRY16_12565 PF04386 Stringent starvation protein B MRY16_12595 PF03372 Endonuclease/Exonuclease/phosphatase family MRY16_12610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRY16_12610 PF00289 Biotin carboxylase, N-terminal domain MRY16_12610 PF02785 Biotin carboxylase C-terminal domain MRY16_12610 PF00364 Biotin-requiring enzyme MRY16_12620 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_12620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_12620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_12625 PF01039 Carboxyl transferase domain MRY16_12640 PF00440 Bacterial regulatory proteins, tetR family MRY16_12640 PF17932 Tetracyclin repressor-like, C-terminal domain MRY16_12650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_12650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_12650 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_12655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_12655 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_12655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_12700 PF01066 CDP-alcohol phosphatidyltransferase MRY16_12705 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MRY16_12725 PF00056 lactate/malate dehydrogenase, NAD binding domain MRY16_12725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MRY16_12735 PF10145 Phage-related minor tail protein MRY16_12735 PF01464 Transglycosylase SLT domain MRY16_12735 PF01551 Peptidase family M23 MRY16_12740 PF04055 Radical SAM superfamily MRY16_12740 PF00919 Uncharacterized protein family UPF0004 MRY16_12740 PF01938 TRAM domain MRY16_12745 PF02562 PhoH-like protein MRY16_12750 PF02130 Uncharacterized protein family UPF0054 MRY16_12760 PF07715 TonB-dependent Receptor Plug Domain MRY16_12760 PF00593 TonB dependent receptor MRY16_12785 PF00303 Thymidylate synthase MRY16_12790 PF00186 Dihydrofolate reductase MRY16_12805 PF01625 Peptide methionine sulfoxide reductase MRY16_12815 PF01618 MotA/TolQ/ExbB proton channel family MRY16_12825 PF01842 ACT domain MRY16_12825 PF00551 Formyl transferase MRY16_12830 PF08360 QacR-like protein, C-terminal region MRY16_12830 PF00440 Bacterial regulatory proteins, tetR family MRY16_12835 PF00171 Aldehyde dehydrogenase family MRY16_12840 PF00830 Ribosomal L28 family MRY16_12845 PF00471 Ribosomal protein L33 MRY16_12850 PF00999 Sodium/hydrogen exchanger family MRY16_12850 PF02254 TrkA-N domain MRY16_12870 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) MRY16_12875 PF00580 UvrD/REP helicase N-terminal domain MRY16_12875 PF13361 UvrD-like helicase C-terminal domain MRY16_12895 PF08272 Topoisomerase I zinc-ribbon-like MRY16_12895 PF01131 DNA topoisomerase MRY16_12895 PF01751 Toprim domain MRY16_12895 PF01396 Topoisomerase DNA binding C4 zinc finger MRY16_12905 PF01638 HxlR-like helix-turn-helix MRY16_12910 PF08240 Alcohol dehydrogenase GroES-like domain MRY16_12910 PF00107 Zinc-binding dehydrogenase MRY16_12915 PF04102 SlyX MRY16_12920 PF00005 ABC transporter MRY16_12920 PF16326 ABC transporter C-terminal domain MRY16_12920 PF12848 ABC transporter MRY16_12930 PF03279 Bacterial lipid A biosynthesis acyltransferase MRY16_12960 PF02774 Semialdehyde dehydrogenase, dimerisation domain MRY16_12960 PF01118 Semialdehyde dehydrogenase, NAD binding domain MRY16_12980 PF01416 tRNA pseudouridine synthase MRY16_12990 PF01176 Translation initiation factor 1A / IF-1 MRY16_13005 PF00180 Isocitrate/isopropylmalate dehydrogenase MRY16_13015 PF00694 Aconitase C-terminal domain MRY16_13020 PF00330 Aconitase family (aconitate hydratase) MRY16_13030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_13030 PF03466 LysR substrate binding domain MRY16_13055 PF00293 NUDIX domain MRY16_13060 PF05524 PEP-utilising enzyme, N-terminal MRY16_13060 PF01590 GAF domain MRY16_13060 PF02896 PEP-utilising enzyme, TIM barrel domain MRY16_13060 PF00391 PEP-utilising enzyme, mobile domain MRY16_13070 PF00141 Peroxidase MRY16_13075 PF04134 Protein of unknown function, DUF393 MRY16_13085 PF12706 Beta-lactamase superfamily domain MRY16_13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_13090 PF03466 LysR substrate binding domain MRY16_13110 PF00849 RNA pseudouridylate synthase MRY16_13110 PF01479 S4 domain MRY16_13115 PF12111 Polyribonucleotide phosphorylase C terminal MRY16_13115 PF10150 Ribonuclease E/G family MRY16_13115 PF00575 S1 RNA binding domain MRY16_13120 PF00501 AMP-binding enzyme MRY16_13120 PF13193 AMP-binding enzyme C-terminal domain MRY16_13140 PF06969 HemN C-terminal domain MRY16_13140 PF04055 Radical SAM superfamily MRY16_13150 PF01554 MatE MRY16_13155 PF03109 ABC1 family MRY16_13160 PF01197 Ribosomal protein L31 MRY16_13170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MRY16_13185 PF01613 Flavin reductase like domain MRY16_13195 PF00375 Sodium:dicarboxylate symporter family MRY16_13200 PF13247 4Fe-4S dicluster domain MRY16_13200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MRY16_13200 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRY16_13210 PF03884 DNA gyrase inhibitor YacG MRY16_13215 PF00753 Metallo-beta-lactamase superfamily MRY16_13220 PF00762 Ferrochelatase MRY16_13230 PF01177 Asp/Glu/Hydantoin racemase MRY16_13250 PF04542 Sigma-70 region 2 MRY16_13250 PF08281 Sigma-70, region 4 MRY16_13260 PF05114 Protein of unknown function (DUF692) MRY16_13275 PF01810 LysE type translocator MRY16_13280 PF01206 Sulfurtransferase TusA MRY16_13285 PF00571 CBS domain MRY16_13285 PF03471 Transporter associated domain MRY16_13290 PF00795 Carbon-nitrogen hydrolase MRY16_13300 PF08334 Type II secretion system (T2SS), protein G MRY16_13300 PF07963 Prokaryotic N-terminal methylation motif MRY16_13305 PF00482 Type II secretion system (T2SS), protein F MRY16_13310 PF00270 DEAD/DEAH box helicase MRY16_13310 PF00271 Helicase conserved C-terminal domain MRY16_13310 PF17764 3′ DNA-binding domain (3′BD) MRY16_13310 PF18074 Primosomal protein N C-terminal domain MRY16_13310 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MRY16_13315 PF00999 Sodium/hydrogen exchanger family MRY16_13315 PF02254 TrkA-N domain MRY16_13320 PF01430 Hsp33 protein MRY16_13325 PF00226 DnaJ domain MRY16_13325 PF01556 DnaJ C terminal domain MRY16_13335 PF01544 CorA-like Mg2+ transporter protein MRY16_13340 PF00013 KH domain MRY16_13340 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MRY16_13340 PF01138 3' exoribonuclease family, domain 1 MRY16_13340 PF03725 3' exoribonuclease family, domain 2 MRY16_13340 PF00575 S1 RNA binding domain MRY16_13345 PF00312 Ribosomal protein S15 MRY16_13350 PF00144 Beta-lactamase MRY16_13355 PF13538 UvrD-like helicase C-terminal domain MRY16_13360 PF12705 PD-(D/E)XK nuclease superfamily MRY16_13360 PF13361 UvrD-like helicase C-terminal domain MRY16_13360 PF00580 UvrD/REP helicase N-terminal domain MRY16_13365 PF17946 RecC C-terminal domain MRY16_13385 PF03976 Polyphosphate kinase 2 (PPK2) MRY16_13395 PF01209 ubiE/COQ5 methyltransferase family MRY16_13405 PF03109 ABC1 family MRY16_13410 PF01494 FAD binding domain MRY16_13415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRY16_13420 PF01502 Phosphoribosyl-AMP cyclohydrolase MRY16_13435 PF13244 Domain of unknown function (DUF4040) MRY16_13435 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MRY16_13435 PF00361 Proton-conducting membrane transporter MRY16_13435 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MRY16_13440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MRY16_13445 PF00361 Proton-conducting membrane transporter MRY16_13450 PF01899 Na+/H+ ion antiporter subunit MRY16_13455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MRY16_13460 PF03334 Na+/H+ antiporter subunit MRY16_13465 PF02033 Ribosome-binding factor A MRY16_13470 PF00009 Elongation factor Tu GTP binding domain MRY16_13470 PF11987 Translation-initiation factor 2 MRY16_13470 PF08364 Bacterial translation initiation factor IF-2 associated region MRY16_13470 PF04760 Translation initiation factor IF-2, N-terminal region MRY16_13475 PF13184 NusA-like KH domain MRY16_13475 PF08529 NusA N-terminal domain MRY16_13475 PF00575 S1 RNA binding domain MRY16_13480 PF17384 RimP C-terminal SH3 domain MRY16_13480 PF02576 RimP N-terminal domain MRY16_13500 PF03840 Preprotein translocase SecG subunit MRY16_13505 PF00121 Triosephosphate isomerase MRY16_13510 PF00437 Type II/IV secretion system protein MRY16_13510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MRY16_13515 PF00482 Type II secretion system (T2SS), protein F MRY16_13520 PF06750 Bacterial Peptidase A24 N-terminal domain MRY16_13520 PF01478 Type IV leader peptidase family MRY16_13525 PF01121 Dephospho-CoA kinase MRY16_13535 PF00588 SpoU rRNA Methylase family MRY16_13535 PF08032 RNA 2'-O ribose methyltransferase substrate binding MRY16_13540 PF06865 Pyrimidine/purine nucleoside phosphorylase MRY16_13545 PF02463 RecF/RecN/SMC N terminal domain MRY16_13550 PF02622 Uncharacterized ACR, COG1678 MRY16_13555 PF03652 Holliday junction resolvase MRY16_13560 PF13533 Biotin-lipoyl like MRY16_13580 PF01066 CDP-alcohol phosphatidyltransferase MRY16_13590 PF01541 GIY-YIG catalytic domain MRY16_13590 PF02151 UvrB/uvrC motif MRY16_13590 PF08459 UvrC Helix-hairpin-helix N-terminal MRY16_13610 PF00990 Diguanylate cyclase, GGDEF domain MRY16_13620 PF00378 Enoyl-CoA hydratase/isomerase MRY16_13620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRY16_13620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRY16_13625 PF00108 Thiolase, N-terminal domain MRY16_13625 PF02803 Thiolase, C-terminal domain MRY16_13630 PF08000 Bacterial PH domain MRY16_13630 PF11724 YvbH-like oligomerisation region MRY16_13645 PF00664 ABC transporter transmembrane region MRY16_13645 PF00005 ABC transporter MRY16_13655 PF01323 DSBA-like thioredoxin domain MRY16_13675 PF00183 Hsp90 protein MRY16_13675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_13690 PF03553 Na+/H+ antiporter family MRY16_13690 PF13726 Na+-H+ antiporter family MRY16_13710 PF04998 RNA polymerase Rpb1, domain 5 MRY16_13710 PF05000 RNA polymerase Rpb1, domain 4 MRY16_13710 PF04983 RNA polymerase Rpb1, domain 3 MRY16_13710 PF00623 RNA polymerase Rpb1, domain 2 MRY16_13710 PF04997 RNA polymerase Rpb1, domain 1 MRY16_13715 PF00562 RNA polymerase Rpb2, domain 6 MRY16_13715 PF04561 RNA polymerase Rpb2, domain 2 MRY16_13715 PF04565 RNA polymerase Rpb2, domain 3 MRY16_13715 PF10385 RNA polymerase beta subunit external 1 domain MRY16_13715 PF04563 RNA polymerase beta subunit MRY16_13715 PF04560 RNA polymerase Rpb2, domain 7 MRY16_13720 PF16320 Ribosomal protein L7/L12 dimerisation domain MRY16_13720 PF00542 Ribosomal protein L7/L12 C-terminal domain MRY16_13725 PF00466 Ribosomal protein L10 MRY16_13730 PF00687 Ribosomal protein L1p/L10e family MRY16_13735 PF00298 Ribosomal protein L11, RNA binding domain MRY16_13735 PF03946 Ribosomal protein L11, N-terminal domain MRY16_13740 PF00467 KOW motif MRY16_13740 PF02357 Transcription termination factor nusG MRY16_13745 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MRY16_13755 PF03143 Elongation factor Tu C-terminal domain MRY16_13755 PF03144 Elongation factor Tu domain 2 MRY16_13755 PF00009 Elongation factor Tu GTP binding domain MRY16_13780 PF04715 Anthranilate synthase component I, N terminal region MRY16_13780 PF00425 chorismate binding enzyme MRY16_13785 PF13419 Haloacid dehalogenase-like hydrolase MRY16_13790 PF00498 FHA domain MRY16_13790 PF12401 Protein of unknown function (DUF2662) MRY16_13795 PF00263 Bacterial type II and III secretion system protein MRY16_13795 PF03958 Bacterial type II/III secretion system short domain MRY16_13810 PF00816 H-NS histone family MRY16_13835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MRY16_13835 PF03900 Porphobilinogen deaminase, C-terminal domain MRY16_13840 PF04397 LytTr DNA-binding domain MRY16_13840 PF00072 Response regulator receiver domain MRY16_13845 PF07694 5TMR of 5TMR-LYT MRY16_13845 PF06580 Histidine kinase MRY16_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_13850 PF14698 Argininosuccinate lyase C-terminal MRY16_13850 PF00206 Lyase MRY16_13855 PF04362 Bacterial Fe(2+) trafficking MRY16_13865 PF01895 PhoU domain MRY16_13870 PF13667 ThiC-associated domain MRY16_13870 PF01964 Radical SAM ThiC family MRY16_13880 PF00149 Calcineurin-like phosphoesterase MRY16_13885 PF01258 Prokaryotic dksA/traR C4-type zinc finger MRY16_13890 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRY16_13895 PF01098 Cell cycle protein MRY16_13900 PF02875 Mur ligase family, glutamate ligase domain MRY16_13900 PF08245 Mur ligase middle domain MRY16_13910 PF07664 Ferrous iron transport protein B C terminus MRY16_13910 PF02421 Ferrous iron transport protein B MRY16_13910 PF07670 Nucleoside recognition MRY16_13920 PF02899 Phage integrase, N-terminal SAM-like domain MRY16_13920 PF00589 Phage integrase family MRY16_13930 PF01842 ACT domain MRY16_13930 PF00742 Homoserine dehydrogenase MRY16_13930 PF03447 Homoserine dehydrogenase, NAD binding domain MRY16_13935 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_13950 PF00768 D-alanyl-D-alanine carboxypeptidase MRY16_13955 PF00072 Response regulator receiver domain MRY16_13955 PF00196 Bacterial regulatory proteins, luxR family MRY16_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_13960 PF00512 His Kinase A (phospho-acceptor) domain MRY16_13965 PF02954 Bacterial regulatory protein, Fis family MRY16_13965 PF00072 Response regulator receiver domain MRY16_13965 PF00158 Sigma-54 interaction domain MRY16_13970 PF17820 PDZ domain MRY16_13970 PF03572 Peptidase family S41 MRY16_13970 PF01471 Putative peptidoglycan binding domain MRY16_13975 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MRY16_13975 PF01676 Metalloenzyme superfamily MRY16_13980 PF03739 Lipopolysaccharide export system permease LptF/LptG MRY16_13985 PF03739 Lipopolysaccharide export system permease LptF/LptG MRY16_13990 PF00883 Cytosol aminopeptidase family, catalytic domain MRY16_13990 PF02789 Cytosol aminopeptidase family, N-terminal domain MRY16_14005 PF00677 Lumazine binding domain MRY16_14010 PF00230 Major intrinsic protein MRY16_14020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRY16_14020 PF01872 RibD C-terminal domain MRY16_14025 PF03477 ATP cone domain MRY16_14030 PF00909 Ammonium Transporter Family MRY16_14035 PF00543 Nitrogen regulatory protein P-II MRY16_14045 PF13335 Magnesium chelatase, subunit ChlI C-terminal MRY16_14045 PF01078 Magnesium chelatase, subunit ChlI MRY16_14065 PF00719 Inorganic pyrophosphatase MRY16_14080 PF13193 AMP-binding enzyme C-terminal domain MRY16_14080 PF00501 AMP-binding enzyme MRY16_14085 PF00521 DNA gyrase/topoisomerase IV, subunit A MRY16_14085 PF03989 DNA gyrase C-terminal domain, beta-propeller MRY16_14090 PF03458 UPF0126 domain MRY16_14095 PF02810 SEC-C motif MRY16_14100 PF03741 Integral membrane protein TerC family MRY16_14100 PF03471 Transporter associated domain MRY16_14105 PF03641 Possible lysine decarboxylase MRY16_14115 PF07690 Major Facilitator Superfamily MRY16_14130 PF11798 IMS family HHH motif MRY16_14130 PF11799 impB/mucB/samB family C-terminal domain MRY16_14130 PF00817 impB/mucB/samB family MRY16_14135 PF00486 Transcriptional regulatory protein, C terminal MRY16_14135 PF00072 Response regulator receiver domain MRY16_14145 PF00512 His Kinase A (phospho-acceptor) domain MRY16_14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_14145 PF00672 HAMP domain MRY16_14150 PF06123 Inner membrane protein CreD MRY16_14170 PF08497 Radical SAM N-terminal MRY16_14170 PF04055 Radical SAM superfamily MRY16_14170 PF11842 Domain of unknown function (DUF3362) MRY16_14175 PF07690 Major Facilitator Superfamily MRY16_14195 PF03358 NADPH-dependent FMN reductase MRY16_14215 PF00291 Pyridoxal-phosphate dependent enzyme MRY16_14250 PF02028 BCCT, betaine/carnitine/choline family transporter MRY16_14270 PF00474 Sodium:solute symporter family MRY16_14275 PF04341 Protein of unknown function, DUF485 MRY16_14280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRY16_14280 PF00512 His Kinase A (phospho-acceptor) domain MRY16_14280 PF09308 LuxQ, periplasmic MRY16_14280 PF00072 Response regulator receiver domain MRY16_14300 PF01327 Polypeptide deformylase MRY16_14305 PF01476 LysM domain MRY16_14310 PF17782 DprA winged helix domain MRY16_14310 PF02481 DNA recombination-mediator protein A MRY16_14315 PF01300 Telomere recombination MRY16_14325 PF00440 Bacterial regulatory proteins, tetR family MRY16_14330 PF07690 Major Facilitator Superfamily MRY16_14340 PF00255 Glutathione peroxidase MRY16_14350 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MRY16_14355 PF02874 ATP synthase alpha/beta family, beta-barrel domain MRY16_14355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRY16_14360 PF00231 ATP synthase MRY16_14365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRY16_14365 PF00306 ATP synthase alpha/beta chain, C terminal domain MRY16_14365 PF02874 ATP synthase alpha/beta family, beta-barrel domain MRY16_14370 PF00213 ATP synthase delta (OSCP) subunit MRY16_14375 PF00430 ATP synthase B/B' CF(0) MRY16_14380 PF00137 ATP synthase subunit C MRY16_14385 PF00119 ATP synthase A chain MRY16_14395 PF01297 Zinc-uptake complex component A periplasmic MRY16_14405 PF00005 ABC transporter MRY16_14410 PF00950 ABC 3 transport family MRY16_14415 PF01810 LysE type translocator MRY16_14420 PF04261 Dyp-type peroxidase family MRY16_14425 PF00390 Malic enzyme, N-terminal domain MRY16_14425 PF03949 Malic enzyme, NAD binding domain MRY16_14430 PF05746 DALR anticodon binding domain MRY16_14430 PF00750 tRNA synthetases class I (R) MRY16_14430 PF03485 Arginyl tRNA synthetase N terminal domain MRY16_14450 PF02678 Pirin MRY16_14450 PF05726 Pirin C-terminal cupin domain MRY16_14455 PF04471 Restriction endonuclease MRY16_14455 PF14338 Mrr N-terminal domain MRY16_14460 PF00117 Glutamine amidotransferase class-I MRY16_14460 PF02540 NAD synthase MRY16_14460 PF00958 GMP synthase C terminal domain MRY16_14465 PF04286 Protein of unknown function (DUF445) MRY16_14475 PF07681 DoxX MRY16_14480 PF09335 SNARE associated Golgi protein MRY16_14495 PF13614 AAA domain MRY16_14505 PF01722 BolA-like protein MRY16_14520 PF07690 Major Facilitator Superfamily MRY16_14520 PF00083 Sugar (and other) transporter MRY16_14525 PF00378 Enoyl-CoA hydratase/isomerase MRY16_14530 PF00378 Enoyl-CoA hydratase/isomerase MRY16_14535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_14535 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_14535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_14540 PF13193 AMP-binding enzyme C-terminal domain MRY16_14540 PF00501 AMP-binding enzyme MRY16_14545 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRY16_14545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRY16_14550 PF00171 Aldehyde dehydrogenase family MRY16_14560 PF00324 Amino acid permease MRY16_14565 PF01042 Endoribonuclease L-PSP MRY16_14570 PF00842 Alanine racemase, C-terminal domain MRY16_14570 PF01168 Alanine racemase, N-terminal domain MRY16_14575 PF01266 FAD dependent oxidoreductase MRY16_14580 PF01037 Lrp/AsnC ligand binding domain MRY16_14600 PF00849 RNA pseudouridylate synthase MRY16_14620 PF12833 Helix-turn-helix domain MRY16_14650 PF00330 Aconitase family (aconitate hydratase) MRY16_14650 PF00694 Aconitase C-terminal domain MRY16_14655 PF00285 Citrate synthase, C-terminal domain MRY16_14665 PF00392 Bacterial regulatory proteins, gntR family MRY16_14665 PF07729 FCD domain MRY16_14670 PF00155 Aminotransferase class I and II MRY16_14675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRY16_14675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRY16_14675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRY16_14675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRY16_14680 PF00342 Phosphoglucose isomerase MRY16_14685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRY16_14685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRY16_14685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRY16_14690 PF00483 Nucleotidyl transferase MRY16_14695 PF02719 Polysaccharide biosynthesis protein MRY16_14705 PF00953 Glycosyl transferase family 4 MRY16_14710 PF01370 NAD dependent epimerase/dehydratase family MRY16_14725 PF12464 Maltose acetyltransferase MRY16_14725 PF14602 Hexapeptide repeat of succinyl-transferase MRY16_14725 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_14740 PF13472 GDSL-like Lipase/Acylhydrolase family MRY16_14740 PF02348 Cytidylyltransferase MRY16_14745 PF00483 Nucleotidyl transferase MRY16_14750 PF00132 Bacterial transferase hexapeptide (six repeats) MRY16_14755 PF08666 SAF domain MRY16_14755 PF03102 NeuB family MRY16_14760 PF02350 UDP-N-acetylglucosamine 2-epimerase MRY16_14765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MRY16_14770 PF02719 Polysaccharide biosynthesis protein MRY16_14775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRY16_14775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRY16_14775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRY16_14780 PF02350 UDP-N-acetylglucosamine 2-epimerase MRY16_14785 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MRY16_14785 PF02563 Polysaccharide biosynthesis/export protein MRY16_14785 PF10531 SLBB domain MRY16_14790 PF01451 Low molecular weight phosphotyrosine protein phosphatase MRY16_14795 PF02706 Chain length determinant protein MRY16_14795 PF13807 G-rich domain on putative tyrosine kinase MRY16_14795 PF13614 AAA domain MRY16_14800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MRY16_14800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_14805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_14805 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MRY16_14810 PF03023 Lipid II flippase MurJ MRY16_14815 PF01510 N-acetylmuramoyl-L-alanine amidase MRY16_14820 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MRY16_14820 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MRY16_14830 PF03725 3' exoribonuclease family, domain 2 MRY16_14830 PF01138 3' exoribonuclease family, domain 1 MRY16_14835 PF00487 Fatty acid desaturase MRY16_14840 PF00175 Oxidoreductase NAD-binding domain MRY16_14840 PF00111 2Fe-2S iron-sulfur cluster binding domain MRY16_14840 PF00970 Oxidoreductase FAD-binding domain MRY16_14845 PF00440 Bacterial regulatory proteins, tetR family MRY16_14850 PF00440 Bacterial regulatory proteins, tetR family MRY16_14850 PF08360 QacR-like protein, C-terminal region MRY16_14855 PF01323 DSBA-like thioredoxin domain MRY16_14865 PF13419 Haloacid dehalogenase-like hydrolase MRY16_14870 PF00106 short chain dehydrogenase MRY16_14880 PF00696 Amino acid kinase family MRY16_14880 PF00583 Acetyltransferase (GNAT) family MRY16_14885 PF09084 NMT1/THI5 like MRY16_14890 PF09084 NMT1/THI5 like MRY16_14895 PF00296 Luciferase-like monooxygenase MRY16_14900 PF00528 Binding-protein-dependent transport system inner membrane component MRY16_14905 PF00005 ABC transporter MRY16_14910 PF00440 Bacterial regulatory proteins, tetR family MRY16_14910 PF08362 YcdC-like protein, C-terminal region MRY16_14925 PF01687 Riboflavin kinase MRY16_14925 PF06574 FAD synthetase MRY16_14930 PF00133 tRNA synthetases class I (I, L, M and V) MRY16_14930 PF06827 Zinc finger found in FPG and IleRS MRY16_14930 PF08264 Anticodon-binding domain of tRNA MRY16_14935 PF01252 Signal peptidase (SPase) II MRY16_14940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRY16_14945 PF03358 NADPH-dependent FMN reductase MRY16_14975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRY16_14980 PF07859 alpha/beta hydrolase fold MRY16_14995 PF03466 LysR substrate binding domain MRY16_14995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_15000 PF01025 GrpE MRY16_15005 PF00012 Hsp70 protein MRY16_15010 PF12706 Beta-lactamase superfamily domain MRY16_15035 PF13406 Transglycosylase SLT domain MRY16_15040 PF02222 ATP-grasp domain MRY16_15040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MRY16_15045 PF00731 AIR carboxylase MRY16_15055 PF01225 Mur ligase family, catalytic domain MRY16_15055 PF02875 Mur ligase family, glutamate ligase domain MRY16_15055 PF08245 Mur ligase middle domain MRY16_15060 PF00106 short chain dehydrogenase MRY16_15075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRY16_15075 PF02770 Acyl-CoA dehydrogenase, middle domain MRY16_15075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRY16_15080 PF03466 LysR substrate binding domain MRY16_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRY16_15090 PF03741 Integral membrane protein TerC family MRY16_15100 PF03738 Glutathionylspermidine synthase preATP-grasp MRY16_15110 PF01979 Amidohydrolase family MRY16_15115 PF00156 Phosphoribosyl transferase domain MRY16_15125 PF13098 Thioredoxin-like domain MRY16_15125 PF10411 Disulfide bond isomerase protein N-terminus MRY16_15130 PF00437 Type II/IV secretion system protein MRY16_15135 PF01926 50S ribosome-binding GTPase MRY16_15135 PF12631 MnmE helical domain MRY16_15135 PF10396 GTP-binding protein TrmE N-terminus MRY16_15140 PF02096 60Kd inner membrane protein MRY16_15140 PF14849 YidC periplasmic domain MRY16_15145 PF01809 Putative membrane protein insertion efficiency factor MRY16_15150 PF00825 Ribonuclease P MRY16_15155 PF00468 Ribosomal protein L34