locus-tag	class	description
J5N61_00025	COG0187	DNA topoisomerase II activity
J5N61_00035	COG0586	Pfam SNARE associated Golgi protein
J5N61_00040	COG0488	(ABC) transporter
J5N61_00075	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J5N61_00080	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J5N61_00120	COG0431	NADPH-dependent FMN reductase
J5N61_00125	COG1047	Peptidyl-prolyl cis-trans
J5N61_00135	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J5N61_00140	COG0196	riboflavin kinase activity
J5N61_00155	COG1309	transcriptional regulator
J5N61_00160	COG1116	anion transmembrane transporter activity
J5N61_00165	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5N61_00170	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5N61_00175	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5N61_00180	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5N61_00185	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J5N61_00185	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J5N61_00195	COG1028	Short-chain dehydrogenase reductase Sdr
J5N61_00200	COG0546	phosphoglycolate phosphatase activity
J5N61_00235	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J5N61_00255	COG3023	N-Acetylmuramoyl-L-alanine amidase
J5N61_00260	COG0728	peptidoglycan biosynthetic process
J5N61_00265	COG0545	Peptidyl-prolyl cis-trans isomerase
J5N61_00275	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J5N61_00280	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J5N61_00315	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J5N61_00325	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5N61_00345	COG1596	polysaccharide export
J5N61_00350	COG2244	polysaccharide biosynthetic process
J5N61_00355	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J5N61_00370	COG0438	transferase activity, transferring glycosyl groups
J5N61_00380	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J5N61_00385	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J5N61_00400	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J5N61_00405	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5N61_00410	COG1448	Aminotransferase
J5N61_00415	COG1802	Transcriptional regulator
J5N61_00430	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J5N61_00480	COG0564	pseudouridine synthase activity
J5N61_00515	COG0251	oxidation-reduction process
J5N61_00520	COG1113	amino acid transport
J5N61_00540	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J5N61_00545	COG1960	acyl-CoA dehydrogenase activity
J5N61_00550	COG1024	Enoyl-CoA hydratase
J5N61_00555	COG1024	Enoyl-CoA hydratase
J5N61_00560	COG0477	Major facilitator Superfamily
J5N61_00570	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
J5N61_00585	COG0805	protein transport
J5N61_00600	COG0446	pyridine nucleotide-disulphide oxidoreductase
J5N61_00605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5N61_00605	COG1116	anion transmembrane transporter activity
J5N61_00610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5N61_00615	COG1116	anion transmembrane transporter activity
J5N61_00620	COG0730	response to heat
J5N61_00685	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5N61_00690	COG3550	peptidyl-serine autophosphorylation
J5N61_00755	COG0270	DNA (cytosine-5-)-methyltransferase activity
J5N61_00760	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5N61_00790	COG3756	Protein conserved in bacteria
J5N61_00825	COG0271	Belongs to the BolA IbaG family
J5N61_00835	COG1192	Involved in chromosome partitioning
J5N61_00850	COG0586	Pfam SNARE associated Golgi protein
J5N61_00860	COG4399	Belongs to the UPF0754 family
J5N61_00865	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J5N61_00865	COG0519	Catalyzes the synthesis of GMP from XMP
J5N61_00870	COG1715	Restriction endonuclease
J5N61_00900	COG0281	malic enzyme
J5N61_00910	COG2837	iron assimilation
J5N61_00920	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J5N61_00925	COG1121	(ABC) transporter
J5N61_00935	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5N61_00965	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J5N61_00975	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J5N61_01005	COG0386	Belongs to the glutathione peroxidase family
J5N61_01020	COG0758	DNA mediated transformation
J5N61_01025	COG1652	LysM domain
J5N61_01050	COG2205	protein histidine kinase activity
J5N61_01050	COG0784	Response regulator, receiver
J5N61_01055	COG3162	membrane
J5N61_01060	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5N61_01080	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J5N61_01115	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J5N61_01135	COG0655	NAD(P)H dehydrogenase (quinone) activity
J5N61_01155	COG2814	Major facilitator Superfamily
J5N61_01180	COG4452	Inner membrane protein CreD
J5N61_01185	COG2205	protein histidine kinase activity
J5N61_01190	COG0745	RESPONSE REGULATOR receiver
J5N61_01195	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5N61_01210	COG2814	Major facilitator Superfamily
J5N61_01225	COG1253	flavin adenine dinucleotide binding
J5N61_01235	COG2860	membrane
J5N61_01245	COG0318	PFAM AMP-dependent synthetase and ligase
J5N61_01260	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J5N61_01280	COG0606	chelatase, subunit chli
J5N61_01320	COG3293	Transposase
J5N61_01340	COG0789	Transcriptional regulator
J5N61_01350	COG0640	Transcriptional regulator
J5N61_01375	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J5N61_01425	COG0347	Belongs to the P(II) protein family
J5N61_01430	COG0004	ammonium transporteR
J5N61_01440	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J5N61_01440	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J5N61_01475	COG0795	lipopolysaccharide-transporting ATPase activity
J5N61_01480	COG0795	lipopolysaccharide-transporting ATPase activity
J5N61_01485	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J5N61_01490	COG0793	Belongs to the peptidase S41A family
J5N61_01505	COG2197	response regulator
J5N61_01525	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J5N61_01535	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J5N61_01540	COG4974	Belongs to the 'phage' integrase family
J5N61_01565	COG0772	Belongs to the SEDS family
J5N61_01570	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5N61_01575	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J5N61_01615	COG3275	phosphorelay sensor kinase activity
J5N61_01625	COG0181	hydroxymethylbilane synthase activity
J5N61_01670	COG1716	ATPase activity
J5N61_01675	COG0546	phosphoglycolate phosphatase activity
J5N61_01705	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J5N61_01725	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J5N61_01730	COG0081	regulation of translation
J5N61_01770	COG2056	Na+-H+ antiporter family
J5N61_01785	COG0326	Molecular chaperone. Has ATPase activity
J5N61_01805	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J5N61_01815	COG1132	(ABC) transporter
J5N61_01850	COG3706	GGDEF domain
J5N61_01880	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J5N61_01905	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J5N61_01915	COG0497	DNA recombination
J5N61_01925	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5N61_01935	COG0237	dephospho-CoA kinase activity
J5N61_01985	COG0195	Participates in both transcription termination and antitermination
J5N61_01995	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J5N61_02000	COG1320	monovalent cation:proton antiporter activity
J5N61_02005	COG2212	antiporter activity
J5N61_02010	COG1863	multisubunit Na H antiporter MnhE subunit
J5N61_02015	COG0651	ATP synthesis coupled electron transport
J5N61_02020	COG1006	Multisubunit Na H antiporter MnhC subunit
J5N61_02025	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J5N61_02025	COG2111	Na H antiporter
J5N61_02040	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J5N61_02055	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J5N61_02065	COG2226	methyltransferase
J5N61_02085	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J5N61_02090	COG1074	ATP-dependent DNA helicase activity
J5N61_02095	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J5N61_02100	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5N61_02105	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J5N61_02110	COG1185	polyribonucleotide nucleotidyltransferase activity
J5N61_02115	COG0598	Magnesium transport protein CorA
J5N61_02120	COG0789	Transcriptional regulator
J5N61_02130	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J5N61_02140	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J5N61_02165	COG4535	Mg2 and Co2 transporter CorC
J5N61_02170	COG0425	Belongs to the sulfur carrier protein TusA family
J5N61_02175	COG1279	arginine transmembrane transporter activity
J5N61_02190	COG3220	belongs to the UPF0276 family
J5N61_02200	COG1595	DNA-templated transcription, initiation
J5N61_02210	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
J5N61_02210	COG0644	oxidoreductase
J5N61_02220	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J5N61_02235	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5N61_02240	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
J5N61_02250	COG0493	'glutamate synthase
J5N61_02250	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
J5N61_02265	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J5N61_02270	COG3293	Transposase
J5N61_02300	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J5N61_02305	COG0534	Mate efflux family protein
J5N61_02315	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J5N61_02335	COG0318	PFAM AMP-dependent synthetase and ligase
J5N61_02340	COG1530	ribonuclease E activity
J5N61_02365	COG0583	DNA-binding transcription factor activity
J5N61_02375	COG0753	catalase activity
J5N61_02385	COG0494	nUDIX hydrolase
J5N61_02410	COG0583	DNA-binding transcription factor activity
J5N61_02435	COG0473	3-isopropylmalate dehydrogenase activity
J5N61_02490	COG1560	Kdo2-lipid A biosynthetic process
J5N61_02500	COG0488	(ABC) transporter
J5N61_02505	COG2900	Belongs to the SlyX family
J5N61_02535	COG0210	DNA helicase
J5N61_02540	COG0724	RNA recognition motif
J5N61_02560	COG4651	solute:proton antiporter activity
J5N61_02560	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J5N61_02585	COG0788	formyltetrahydrofolate deformylase activity
J5N61_02650	COG4773	Receptor
J5N61_02665	COG1702	phosphate starvation-inducible protein PhoH
J5N61_02675	COG1196	nuclear chromosome segregation
J5N61_02675	COG0739	heme binding
J5N61_02675	COG0741	lytic transglycosylase activity
J5N61_02705	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J5N61_02710	COG1183	phosphatidylcholine synthase activity
J5N61_02745	COG3293	Transposase
J5N61_02755	COG1960	acyl-CoA dehydrogenase activity
J5N61_02760	COG1960	acyl-CoA dehydrogenase activity
J5N61_02770	COG1309	transcriptional regulator
J5N61_02785	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J5N61_02790	COG1960	acyl-CoA dehydrogenase activity
J5N61_02845	COG2969	positive regulation of protein catabolic process
J5N61_02850	COG0625	glutathione transferase activity
J5N61_02855	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J5N61_02875	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5N61_02880	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J5N61_02960	COG1862	Preprotein translocase
J5N61_02980	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J5N61_02990	COG2205	protein histidine kinase activity
J5N61_02990	COG0784	Response regulator, receiver
J5N61_02995	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J5N61_03005	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5N61_03015	COG0438	transferase activity, transferring glycosyl groups
J5N61_03045	COG3306	glycosyltransferase involved in LPS biosynthesis
J5N61_03060	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J5N61_03105	COG1960	acyl-CoA dehydrogenase activity
J5N61_03110	COG1960	acyl-CoA dehydrogenase activity
J5N61_03120	COG2205	protein histidine kinase activity
J5N61_03125	COG0745	RESPONSE REGULATOR receiver
J5N61_03140	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J5N61_03160	COG2096	Adenosyltransferase
J5N61_03165	COG4206	TonB-dependent receptor
J5N61_03220	COG0285	dihydrofolate synthase activity
J5N61_03245	COG0450	alkyl hydroperoxide reductase
J5N61_03265	COG0477	Major facilitator Superfamily
J5N61_03270	COG1272	protein, Hemolysin III
J5N61_03300	COG1024	Enoyl-CoA hydratase
J5N61_03300	COG1250	3-hydroxyacyl-CoA dehydrogenase
J5N61_03305	COG0183	Belongs to the thiolase family
J5N61_03320	COG2207	Transcriptional regulator
J5N61_03325	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J5N61_03340	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5N61_03360	COG0183	Belongs to the thiolase family
J5N61_03370	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
J5N61_03370	COG2885	chlorophyll binding
J5N61_03380	COG1690	Belongs to the RtcB family
J5N61_03385	COG0833	amino acid
J5N61_03395	COG2233	PERMEase
J5N61_03400	COG1217	gtp-binding protein TYPA
J5N61_03405	COG1970	mechanosensitive ion channel activity
J5N61_03415	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5N61_03425	COG4772	TonB-dependent receptor
J5N61_03435	COG0354	folic acid binding
J5N61_03445	COG3189	MarR family transcriptional regulator
J5N61_03450	COG2824	Alkylphosphonate utilization operon protein PhnA
J5N61_03455	COG3422	double-strand break repair
J5N61_03485	COG0840	transmembrane signaling receptor activity
J5N61_03490	COG2198	Histidine kinase
J5N61_03490	COG0643	Histidine kinase
J5N61_03490	COG2198	Histidine kinase
J5N61_03490	COG0643	Histidine kinase
J5N61_03505	COG5510	response to toxic substance
J5N61_03520	COG2832	Protein of unknown function (DUF454)
J5N61_03525	COG1376	ErfK ybiS ycfS ynhG family protein
J5N61_03570	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J5N61_03580	COG1289	transmembrane transporter activity
J5N61_03585	COG2814	Major facilitator Superfamily
J5N61_03600	COG0786	glutamate:sodium symporter activity
J5N61_03605	COG1115	amino acid carrier protein
J5N61_03610	COG1752	Esterase of the alpha-beta hydrolase superfamily
J5N61_03615	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
J5N61_03660	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5N61_03670	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5N61_03675	COG1077	Cell shape determining protein MreB Mrl
J5N61_03680	COG1792	Involved in formation and maintenance of cell shape
J5N61_03690	COG0424	maF-like protein
J5N61_03695	COG1530	ribonuclease E activity
J5N61_03700	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5N61_03710	COG0560	Phosphoserine phosphatase
J5N61_03720	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
J5N61_03725	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
J5N61_03730	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
J5N61_03735	COG2205	protein histidine kinase activity
J5N61_03740	COG0745	RESPONSE REGULATOR receiver
J5N61_03750	COG2851	Citrate transporter
J5N61_03760	COG0671	phosphoesterase, PA-phosphatase related
J5N61_03765	COG0174	glutamine synthetase
J5N61_03785	COG1113	amino acid transport
J5N61_03795	COG0142	geranyltranstransferase activity
J5N61_03800	COG2814	Major facilitator Superfamily
J5N61_03815	COG1752	Esterase of the alpha-beta hydrolase superfamily
J5N61_03835	COG3293	Transposase
J5N61_03840	COG2194	sulfuric ester hydrolase activity
J5N61_03845	COG0745	RESPONSE REGULATOR receiver
J5N61_03850	COG0642	Histidine kinase
J5N61_03865	COG0004	ammonium transporteR
J5N61_03880	COG2852	Protein conserved in bacteria
J5N61_03895	COG0525	valine-tRNA ligase activity
J5N61_03905	COG1028	Short-chain dehydrogenase reductase Sdr
J5N61_03915	COG0393	Putative heavy-metal-binding
J5N61_03920	COG0393	Putative heavy-metal-binding
J5N61_03925	COG1538	Outer membrane efflux protein
J5N61_03935	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5N61_03940	COG0671	phosphoesterase, PA-phosphatase related
J5N61_03970	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J5N61_03985	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5N61_03985	COG1648	precorrin-2 dehydrogenase activity
J5N61_03990	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J5N61_03995	COG1733	regulation of RNA biosynthetic process
J5N61_04005	COG0531	amino acid
J5N61_04020	COG0321	lipoyl(octanoyl) transferase activity
J5N61_04055	COG0500	methyltransferase
J5N61_04060	COG0586	Pfam SNARE associated Golgi protein
J5N61_04065	COG1054	Belongs to the UPF0176 family
J5N61_04090	COG2009	succinate dehydrogenase
J5N61_04095	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J5N61_04100	COG1053	succinate dehydrogenase
J5N61_04105	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J5N61_04120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5N61_04140	COG0726	polysaccharide deacetylase
J5N61_04140	COG1649	PFAM Uncharacterised BCR, COG1649
J5N61_04145	COG1215	transferase activity, transferring glycosyl groups
J5N61_04155	COG2268	Band 7 protein
J5N61_04160	COG1585	Membrane protein implicated in regulation of membrane protease activity
J5N61_04170	COG2354	Protein conserved in bacteria
J5N61_04175	COG2321	neutral zinc metallopeptidase
J5N61_04195	COG0589	response to stress
J5N61_04215	COG0505	Belongs to the CarA family
J5N61_04240	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5N61_04245	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J5N61_04250	COG2304	oxidoreductase activity
J5N61_04270	COG3201	nicotinamide mononucleotide transporter
J5N61_04275	COG0584	glycerophosphoryl diester phosphodiesterase
J5N61_04280	COG2194	sulfuric ester hydrolase activity
J5N61_04290	COG2239	Acts as a magnesium transporter
J5N61_04300	COG0501	Belongs to the peptidase M48B family
J5N61_04305	COG0741	lytic transglycosylase activity
J5N61_04320	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
J5N61_04325	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J5N61_04335	COG0582	viral genome integration into host DNA
J5N61_04390	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J5N61_04395	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5N61_04400	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5N61_04430	COG1484	DNA-dependent DNA replication
J5N61_04475	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J5N61_04530	COG1301	dicarboxylic acid transport
J5N61_04535	COG0583	DNA-binding transcription factor activity
J5N61_04550	COG1607	acyl-coa hydrolase
J5N61_04560	COG0523	cobalamin synthesis protein
J5N61_04565	COG4681	YaeQ
J5N61_04580	COG0726	polysaccharide deacetylase
J5N61_04580	COG1649	PFAM Uncharacterised BCR, COG1649
J5N61_04585	COG1215	transferase activity, transferring glycosyl groups
J5N61_04625	COG2388	GCN5-related N-acetyl-transferase
J5N61_04635	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J5N61_04650	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
J5N61_04655	COG1597	lipid kinase activity
J5N61_04665	COG3293	Transposase
J5N61_04725	COG3328	transposase activity
J5N61_04735	COG1335	isochorismatase
J5N61_04755	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5N61_04775	COG2323	membrane
J5N61_04825	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
J5N61_04830	COG1877	trehalose-phosphatase activity
J5N61_04845	COG1570	exodeoxyribonuclease VII activity
J5N61_04885	COG0582	viral genome integration into host DNA
J5N61_04910	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
J5N61_04935	COG4771	TonB-dependent receptor
J5N61_04950	COG0288	reversible hydration of carbon dioxide
J5N61_04960	COG4181	ATPase activity
J5N61_04965	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J5N61_04970	COG0457	Tetratricopeptide repeat
J5N61_04970	COG0705	Rhomboid family
J5N61_04985	COG2070	2-Nitropropane dioxygenase
J5N61_04990	COG1294	oxidase, subunit
J5N61_04995	COG1271	oxidase subunit
J5N61_05010	COG0415	Belongs to the DNA photolyase family
J5N61_05020	COG1252	NADH dehydrogenase
J5N61_05025	COG1686	Belongs to the peptidase S11 family
J5N61_05050	COG1187	pseudouridine synthase activity
J5N61_05065	COG0612	Peptidase, M16
J5N61_05095	COG0352	thiamine-phosphate diphosphorylase activity
J5N61_05105	COG0564	pseudouridine synthase activity
J5N61_05115	COG0783	Belongs to the Dps family
J5N61_05125	COG1309	transcriptional regulator
J5N61_05145	COG1309	transcriptional regulator
J5N61_05155	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J5N61_05160	COG0076	glutamate decarboxylase activity
J5N61_05175	COG0573	inorganic phosphate transmembrane transporter activity
J5N61_05185	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5N61_05190	COG0616	signal peptide processing
J5N61_05215	COG0742	ribosomal rna small subunit methyltransferase
J5N61_05220	COG0768	penicillin binding
J5N61_05245	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J5N61_05250	COG2878	Part of a membrane complex involved in electron transport
J5N61_05255	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5N61_05265	COG3384	dioxygenase
J5N61_05280	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J5N61_05360	COG3831	ATPase activity
J5N61_05365	COG0714	Associated with various cellular activities
J5N61_05375	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5N61_05410	COG0006	proline dipeptidase activity
J5N61_05415	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J5N61_05420	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J5N61_05480	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J5N61_05485	COG1388	LysM domain
J5N61_05485	COG0741	lytic transglycosylase activity
J5N61_05490	COG4166	transmembrane transport
J5N61_05495	COG4174	ABC transporter (Permease)
J5N61_05500	COG4239	(ABC) transporter, permease
J5N61_05505	COG4172	Belongs to the ABC transporter superfamily
J5N61_05525	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J5N61_05535	COG2203	Gaf domain
J5N61_05535	COG4251	negative regulation of phosphorylation
J5N61_05535	COG5001	Diguanylate cyclase
J5N61_05535	COG3706	GGDEF domain
J5N61_05550	COG3739	integral membrane protein
J5N61_05570	COG0302	gtp cyclohydrolase
J5N61_05590	COG3217	Mosc domain protein beta barrel domain protein
J5N61_05590	COG0633	Ferredoxin
J5N61_05595	COG1823	symporter activity
J5N61_05600	COG0512	Glutamine amidotransferase of anthranilate synthase
J5N61_05605	COG0174	glutamine synthetase
J5N61_05610	COG3161	chorismate lyase activity
J5N61_05615	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J5N61_05655	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J5N61_05660	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J5N61_05665	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5N61_05675	COG2223	nitrite transmembrane transporter activity
J5N61_05685	COG0024	Methionine aminopeptidase
J5N61_05690	COG0052	Belongs to the universal ribosomal protein uS2 family
J5N61_05705	COG0280	phosphate acetyltransferase
J5N61_05705	COG0281	malic enzyme
J5N61_05715	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J5N61_05720	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J5N61_05725	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J5N61_05750	COG2011	ABC-type metal ion transport system permease component
J5N61_05755	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5N61_05765	COG0151	Belongs to the GarS family
J5N61_05770	COG0138	bifunctional purine biosynthesis protein purh
J5N61_05775	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J5N61_05830	COG2252	PERMEase
J5N61_05835	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J5N61_05840	COG3038	cytochrome b561
J5N61_05855	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J5N61_05865	COG0527	aspartate kinase activity
J5N61_05905	COG2887	Belongs to the helicase family. UvrD subfamily
J5N61_05965	COG1484	DNA-dependent DNA replication
J5N61_06015	COG5410	chromosome segregation
J5N61_06020	COG3567	Phage-associated protein, HI1409 family
J5N61_06165	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5N61_06185	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J5N61_06200	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J5N61_06210	COG2308	Evidence 4 Homologs of previously reported genes of
J5N61_06220	COG1305	Transglutaminase-like
J5N61_06230	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5N61_06235	COG0305	Participates in initiation and elongation during chromosome replication
J5N61_06285	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J5N61_06290	COG1845	cytochrome c oxidase, subunit III
J5N61_06295	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J5N61_06300	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J5N61_06325	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5N61_06350	COG0564	pseudouridine synthase activity
J5N61_06360	COG0802	atpase or kinase
J5N61_06365	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J5N61_06375	COG1923	regulation of RNA biosynthetic process
J5N61_06380	COG0697	spore germination
J5N61_06385	COG0778	Nitroreductase
J5N61_06390	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J5N61_06400	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5N61_06410	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J5N61_06410	COG0519	Catalyzes the synthesis of GMP from XMP
J5N61_06420	COG0531	amino acid
J5N61_06430	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J5N61_06485	COG0308	aminopeptidase N
J5N61_06490	COG1760	l-serine dehydratase
J5N61_06500	COG1714	RDD family
J5N61_06525	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J5N61_06540	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J5N61_06570	COG0316	Belongs to the HesB IscA family
J5N61_06575	COG0822	iron-sulfur transferase activity
J5N61_06605	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5N61_06620	COG2137	regulation of response to DNA damage stimulus
J5N61_06630	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J5N61_06635	COG1011	Hydrolase
J5N61_06655	COG0268	Binds directly to 16S ribosomal RNA
J5N61_06660	COG0702	epimerase
J5N61_06665	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J5N61_06695	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5N61_06715	COG0424	maF-like protein
J5N61_06740	COG0778	Nitroreductase
J5N61_06775	COG1286	toxin biosynthetic process
J5N61_06825	COG3634	alkyl hydroperoxide reductase activity
J5N61_06830	COG2267	carboxylic ester hydrolase activity
J5N61_06865	COG0436	Aminotransferase
J5N61_06875	COG0386	Belongs to the glutathione peroxidase family
J5N61_06920	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J5N61_06935	COG0012	GTP binding
J5N61_06940	COG2011	ABC-type metal ion transport system permease component
J5N61_06945	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5N61_06950	COG1464	Belongs to the NlpA lipoprotein family
J5N61_07005	COG1560	Kdo2-lipid A biosynthetic process
J5N61_07010	COG0753	catalase activity
J5N61_07050	COG3293	Transposase
J5N61_07090	COG0582	viral genome integration into host DNA
J5N61_07160	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
J5N61_07165	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
J5N61_07280	COG2801	Transposase and inactivated derivatives
J5N61_07285	COG0582	viral genome integration into host DNA
J5N61_07330	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
J5N61_07335	COG1160	GTP binding
J5N61_07365	COG0582	viral genome integration into host DNA
J5N61_07380	COG3177	Filamentation induced by cAMP protein fic
J5N61_07390	COG2186	Transcriptional regulator
J5N61_07400	COG0277	FAD linked oxidase domain protein
J5N61_07415	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J5N61_07420	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5N61_07445	COG2951	lytic endotransglycosylase activity
J5N61_07450	COG0772	Belongs to the SEDS family
J5N61_07465	COG0842	Transport permease protein
J5N61_07470	COG1131	(ABC) transporter
J5N61_07520	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J5N61_07525	COG0826	peptidase U32
J5N61_07540	COG4682	membrane
J5N61_07555	COG2808	Putative FMN-binding domain
J5N61_07570	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J5N61_07575	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J5N61_07600	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J5N61_07620	COG2801	Transposase and inactivated derivatives
J5N61_07635	COG0729	surface antigen
J5N61_07680	COG0471	metal ion transport
J5N61_07685	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J5N61_07695	COG3647	Membrane
J5N61_07700	COG2814	Major facilitator Superfamily
J5N61_07705	COG0583	DNA-binding transcription factor activity
J5N61_07730	COG1720	tRNA m6t6A37 methyltransferase activity
J5N61_07740	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J5N61_07755	COG0642	Histidine kinase
J5N61_07765	COG0494	nUDIX hydrolase
J5N61_07775	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5N61_07780	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5N61_07785	COG3139	Protein of unknown function (DUF1315)
J5N61_07795	COG1960	acyl-CoA dehydrogenase activity
J5N61_07800	COG2801	Transposase and inactivated derivatives
J5N61_07815	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J5N61_07825	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J5N61_07830	COG2195	Cleaves the N-terminal amino acid of tripeptides
J5N61_07850	COG1690	Belongs to the RtcB family
J5N61_07860	COG4650	regulator
J5N61_07925	COG0513	Belongs to the DEAD box helicase family
J5N61_07935	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5N61_07945	COG3178	'Phosphotransferase
J5N61_07950	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
J5N61_07960	COG1192	Involved in chromosome partitioning
J5N61_07965	COG1475	DNA binding
J5N61_07970	COG0811	peptide transport
J5N61_07980	COG1132	(ABC) transporter
J5N61_07985	COG1663	tetraacyldisaccharide 4'-kinase activity
J5N61_08000	COG3293	Transposase
J5N61_08010	COG0084	hydrolase, TatD family'
J5N61_08075	COG0776	regulation of translation
J5N61_08090	COG3293	Transposase
J5N61_08115	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J5N61_08120	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J5N61_08155	COG0024	Methionine aminopeptidase
J5N61_08160	COG0583	DNA-binding transcription factor activity
J5N61_08165	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5N61_08175	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J5N61_08180	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5N61_08185	COG0517	IMP dehydrogenase activity
J5N61_08185	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J5N61_08215	COG0552	protein localization to endoplasmic reticulum
J5N61_08225	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J5N61_08240	COG4890	Cyd operon protein YbgT
J5N61_08245	COG1294	oxidase, subunit
J5N61_08270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5N61_08290	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J5N61_08295	COG0569	domain protein
J5N61_08300	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J5N61_08305	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J5N61_08330	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J5N61_08335	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J5N61_08340	COG0542	response to heat
J5N61_08350	COG0488	(ABC) transporter
J5N61_08355	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J5N61_08370	COG0446	pyridine nucleotide-disulphide oxidoreductase
J5N61_08370	COG1902	pentaerythritol trinitrate reductase activity
J5N61_08420	COG0148	phosphopyruvate hydratase activity
J5N61_08425	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J5N61_08465	COG2801	Transposase and inactivated derivatives
J5N61_08480	COG1802	Transcriptional regulator
J5N61_08495	COG1063	alcohol dehydrogenase
J5N61_08505	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J5N61_08525	COG1454	alcohol dehydrogenase
J5N61_08535	COG2814	Major facilitator Superfamily
J5N61_08540	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5N61_08545	COG0183	Belongs to the thiolase family
J5N61_08550	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J5N61_08555	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J5N61_08560	COG3135	benzoate transporter
J5N61_08565	COG1028	Short-chain dehydrogenase reductase Sdr
J5N61_08570	COG0543	2 iron, 2 sulfur cluster binding
J5N61_08570	COG0633	Ferredoxin
J5N61_08590	COG4829	muconolactone delta-isomerase
J5N61_08595	COG4948	Mandelate Racemase Muconate Lactonizing
J5N61_08600	COG0583	DNA-binding transcription factor activity
J5N61_08610	COG1944	ATP diphosphatase activity
J5N61_08625	COG0730	response to heat
J5N61_08640	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J5N61_08665	COG0537	adenosine 5'-monophosphoramidase activity
J5N61_08695	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J5N61_08715	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5N61_08725	COG0133	tryptophan synthase activity
J5N61_08740	COG3706	GGDEF domain
J5N61_08760	COG2801	Transposase and inactivated derivatives
J5N61_08850	COG0730	response to heat
J5N61_08855	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J5N61_08870	COG3293	Transposase
J5N61_08875	COG4774	siderophore transport
J5N61_08905	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J5N61_08920	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5N61_08935	COG2223	nitrite transmembrane transporter activity
J5N61_08980	COG3293	Transposase
J5N61_08985	COG1960	acyl-CoA dehydrogenase activity
J5N61_08990	COG1960	acyl-CoA dehydrogenase activity
J5N61_08995	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5N61_09000	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J5N61_09005	COG2207	Transcriptional regulator
J5N61_09010	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J5N61_09020	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J5N61_09045	COG0575	Belongs to the CDS family
J5N61_09050	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5N61_09055	COG0233	cytoplasmic translational termination
J5N61_09070	COG3852	Histidine kinase
J5N61_09075	COG2204	response regulator
J5N61_09150	COG0303	'Molybdopterin
J5N61_09155	COG0315	cyclic pyranopterin monophosphate synthase activity
J5N61_09155	COG0521	Mo-molybdopterin cofactor biosynthetic process
J5N61_09170	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J5N61_09190	COG0243	molybdopterin cofactor binding
J5N61_09195	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5N61_09200	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5N61_09200	COG2146	nitrite reductase [NAD(P)H] activity
J5N61_09205	COG2223	nitrite transmembrane transporter activity
J5N61_09215	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5N61_09215	COG1116	anion transmembrane transporter activity
J5N61_09245	COG2814	Major facilitator Superfamily
J5N61_09250	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5N61_09375	COG1484	DNA-dependent DNA replication
J5N61_09435	COG5377	YqaJ viral recombinase family
J5N61_09445	COG0210	DNA helicase
J5N61_09470	COG1113	amino acid transport
J5N61_09480	COG0625	glutathione transferase activity
J5N61_09500	COG0069	glutamate synthase activity
J5N61_09535	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J5N61_09540	COG1454	alcohol dehydrogenase
J5N61_09545	COG0824	Thioesterase
J5N61_09550	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J5N61_09555	COG2850	peptidyl-arginine hydroxylation
J5N61_09595	COG3122	Protein conserved in bacteria
J5N61_09600	COG0668	transmembrane transport
J5N61_09615	COG1132	(ABC) transporter
J5N61_09635	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5N61_09645	COG0506	proline dehydrogenase activity
J5N61_09645	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J5N61_09645	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
J5N61_09650	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5N61_09670	COG0590	tRNA wobble adenosine to inosine editing
J5N61_09675	COG3811	Belongs to the UPF0386 family
J5N61_09685	COG2353	YceI-like domain
J5N61_09695	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J5N61_09700	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J5N61_09735	COG1278	Cold shock
J5N61_09755	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J5N61_09755	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J5N61_09780	COG3539	Fimbrial protein
J5N61_09820	COG2130	NADP-dependent
J5N61_09825	COG1309	transcriptional regulator
J5N61_09835	COG1979	alcohol dehydrogenase
J5N61_09850	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
J5N61_09865	COG0604	alcohol dehydrogenase
J5N61_09865	COG3321	synthase
J5N61_09870	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J5N61_09875	COG0583	DNA-binding transcription factor activity
J5N61_09880	COG4221	oxidoreductase activity
J5N61_09915	COG1643	Atp-dependent helicase
J5N61_09935	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J5N61_09950	COG3634	alkyl hydroperoxide reductase activity
J5N61_09970	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J5N61_10020	COG1765	OsmC-like protein
J5N61_10030	COG0501	Belongs to the peptidase M48B family
J5N61_10035	COG4770	biotin carboxylase activity
J5N61_10040	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
J5N61_10045	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
J5N61_10050	COG3293	Transposase
J5N61_10055	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
J5N61_10060	COG2072	flavoprotein involved in K transport
J5N61_10080	COG1309	transcriptional regulator
J5N61_10105	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5N61_10120	COG1028	Short-chain dehydrogenase reductase Sdr
J5N61_10130	COG0010	Belongs to the arginase family
J5N61_10160	COG2188	Transcriptional regulator
J5N61_10205	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J5N61_10230	COG2351	hydroxyisourate hydrolase activity
J5N61_10255	COG0745	RESPONSE REGULATOR receiver
J5N61_10260	COG0642	Histidine kinase
J5N61_10265	COG4106	trans-aconitate 2-methyltransferase activity
J5N61_10275	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J5N61_10315	COG1960	acyl-CoA dehydrogenase activity
J5N61_10380	COG2072	flavoprotein involved in K transport
J5N61_10390	COG2144	transferase activity, transferring acyl groups
J5N61_10415	COG3604	Transcriptional regulator
J5N61_10465	COG1785	Belongs to the alkaline phosphatase family
J5N61_10470	COG1785	Belongs to the alkaline phosphatase family
J5N61_10485	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J5N61_10510	COG2132	Multicopper oxidase
J5N61_10525	COG2205	protein histidine kinase activity
J5N61_10530	COG2217	Heavy metal translocating P-type atpase
J5N61_10570	COG0582	viral genome integration into host DNA
J5N61_10625	COG1902	pentaerythritol trinitrate reductase activity
J5N61_10625	COG0446	pyridine nucleotide-disulphide oxidoreductase
J5N61_10635	COG1741	Belongs to the pirin family
J5N61_10715	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J5N61_10735	COG0582	viral genome integration into host DNA
J5N61_10755	COG0714	Associated with various cellular activities
J5N61_10760	COG2879	small protein
J5N61_10765	COG1966	Carbon starvation protein
J5N61_10770	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J5N61_10775	COG1509	lysine 2,3-aminomutase activity
J5N61_10810	COG1067	ATP-dependent peptidase activity
J5N61_10815	COG0583	DNA-binding transcription factor activity
J5N61_10840	COG1686	Belongs to the peptidase S11 family
J5N61_10845	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J5N61_10860	COG0482	sulfurtransferase activity
J5N61_10940	COG1414	Transcriptional regulator
J5N61_10965	COG0515	serine threonine protein kinase
J5N61_10965	COG2815	serine threonine protein kinase
J5N61_10985	COG0697	spore germination
J5N61_11005	COG1610	YqeY-like protein
J5N61_11020	COG4783	chaperone-mediated protein folding
J5N61_11055	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5N61_11060	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5N61_11075	COG2351	hydroxyisourate hydrolase activity
J5N61_11090	COG5002	protein histidine kinase activity
J5N61_11110	COG0772	Belongs to the SEDS family
J5N61_11115	COG1253	flavin adenine dinucleotide binding
J5N61_11125	COG3842	ATPase activity
J5N61_11130	COG1840	ABC-type Fe3 transport system, periplasmic component
J5N61_11150	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J5N61_11175	COG1739	Uncharacterized protein family UPF0029
J5N61_11190	COG1538	Outer membrane efflux protein
J5N61_11195	COG1137	ATPase activity
J5N61_11200	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J5N61_11210	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
J5N61_11215	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J5N61_11215	COG0517	IMP dehydrogenase activity
J5N61_11230	COG3015	lipoprotein NlpE involved in copper resistance
J5N61_11250	COG1253	flavin adenine dinucleotide binding
J5N61_11255	COG0222	ribosome binding
J5N61_11270	COG0175	sulfate reduction
J5N61_11280	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J5N61_11290	COG1773	rubredoxin
J5N61_11295	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5N61_11300	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5N61_11305	COG0583	DNA-binding transcription factor activity
J5N61_11360	COG0556	nucleotide-excision repair
J5N61_11385	COG0436	Aminotransferase
J5N61_11405	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J5N61_11420	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J5N61_11425	COG0571	ribonuclease III activity
J5N61_11440	COG0481	GTPase activity
J5N61_11450	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5N61_11465	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5N61_11470	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5N61_11475	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
J5N61_11485	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
J5N61_11490	COG4208	sulfate ABC transporter
J5N61_11495	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J5N61_11500	COG0583	DNA-binding transcription factor activity
J5N61_11515	COG0602	queuosine metabolic process
J5N61_11520	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J5N61_11545	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J5N61_11560	COG1051	belongs to the nudix hydrolase family
J5N61_11560	COG1056	cytidyltransferase-related domain
J5N61_11565	COG1024	Enoyl-CoA hydratase
J5N61_11570	COG0778	Nitroreductase
J5N61_11575	COG3323	Protein of unknown function (DUF1653)
J5N61_11575	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J5N61_11585	COG2814	Major facilitator Superfamily
J5N61_11590	COG0047	phosphoribosylformylglycinamidine synthase activity
J5N61_11590	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5N61_11615	COG0824	Thioesterase
J5N61_11635	COG0823	Involved in the tonB-independent uptake of proteins
J5N61_11655	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5N61_11685	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J5N61_11690	COG0628	permease
J5N61_11700	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J5N61_11710	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J5N61_11710	COG0616	signal peptide processing
J5N61_11720	COG2333	competence protein COMEC
J5N61_11720	COG0658	competence protein
J5N61_11725	COG1136	(ABC) transporter
J5N61_11730	COG4591	ABC-type transport system involved in lipoprotein release permease component
J5N61_11745	COG1671	Belongs to the UPF0178 family
J5N61_11770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5N61_11780	COG0842	Transport permease protein
J5N61_11790	COG2318	DinB family
J5N61_11810	COG1280	lysine exporter protein (LysE YggA)
J5N61_11820	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J5N61_11825	COG0019	diaminopimelate decarboxylase activity
J5N61_11835	COG1113	amino acid transport
J5N61_11840	COG1115	amino acid carrier protein
J5N61_11855	COG0306	phosphate transporter
J5N61_11875	COG2801	Transposase and inactivated derivatives
J5N61_11890	COG0242	peptide deformylase activity
J5N61_11910	COG0589	response to stress
J5N61_11915	COG2175	clavaminate synthase activity
J5N61_11920	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5N61_11925	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J5N61_11930	COG4521	taurine ABC transporter
J5N61_11940	COG1230	cation diffusion facilitator family transporter
J5N61_11955	COG4149	molybdate abc transporter
J5N61_11960	COG0725	ABC transporter, periplasmic molybdate-binding protein
J5N61_11970	COG3046	protein related to deoxyribodipyrimidine photolyase
J5N61_11980	COG3040	lipid binding
J5N61_11985	COG0833	amino acid
J5N61_12000	COG1012	belongs to the aldehyde dehydrogenase family
J5N61_12010	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5N61_12015	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5N61_12050	COG0582	viral genome integration into host DNA
J5N61_12100	COG2217	Heavy metal translocating P-type atpase
J5N61_12105	COG0789	Transcriptional regulator
J5N61_12115	COG2814	Major facilitator Superfamily
J5N61_12120	COG1566	PFAM secretion protein HlyD family protein
J5N61_12135	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J5N61_12190	COG0420	3'-5' exonuclease activity
J5N61_12220	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J5N61_12240	COG0121	glutamine amidotransferase
J5N61_12255	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5N61_12260	COG0756	dUTP diphosphatase activity
J5N61_12265	COG0210	DNA helicase
J5N61_12270	COG2885	chlorophyll binding
J5N61_12275	COG0204	Acyl-transferase
J5N61_12285	COG0850	regulation of cytokinetic process
J5N61_12295	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J5N61_12305	COG1280	lysine exporter protein (LysE YggA)
J5N61_12310	COG1674	ftsk spoiiie
J5N61_12315	COG0492	ferredoxin-NADP+ reductase activity
J5N61_12320	COG0500	methyltransferase
J5N61_12325	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J5N61_12335	COG0456	acetyltransferase
J5N61_12350	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J5N61_12360	COG0049	tRNA binding
J5N61_12380	COG1981	membrane
J5N61_12395	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J5N61_12395	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5N61_12420	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J5N61_12445	COG0564	pseudouridine synthase activity
J5N61_12470	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J5N61_12500	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5N61_12520	COG3293	Transposase
J5N61_12540	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J5N61_12550	COG0352	thiamine-phosphate diphosphorylase activity
J5N61_12550	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5N61_12550	COG0351	phosphomethylpyrimidine kinase
J5N61_12555	COG1652	LysM domain
J5N61_12560	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5N61_12585	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J5N61_12590	COG1399	metal-binding, possibly nucleic acid-binding protein
J5N61_12595	COG3101	peptidyl-lysine hydroxylation
J5N61_12600	COG0009	L-threonylcarbamoyladenylate synthase
J5N61_12610	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J5N61_12615	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J5N61_12625	COG4172	Belongs to the ABC transporter superfamily
J5N61_12650	COG4166	transmembrane transport
J5N61_12690	COG4106	trans-aconitate 2-methyltransferase activity
J5N61_12705	COG0596	Alpha beta hydrolase
J5N61_12705	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5N61_12705	COG2226	methyltransferase
J5N61_12715	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J5N61_12735	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J5N61_12745	COG1196	nuclear chromosome segregation
J5N61_12755	COG0730	response to heat
J5N61_12775	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J5N61_12835	COG0489	protein tyrosine kinase activity
J5N61_12860	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5N61_12860	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5N61_12870	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5N61_12900	COG2515	1-aminocyclopropane-1-carboxylate deaminase
J5N61_12910	COG2081	HI0933 family
J5N61_12920	COG0668	transmembrane transport
J5N61_12935	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J5N61_12940	COG0583	DNA-binding transcription factor activity
J5N61_12945	COG1278	Cold shock
J5N61_12965	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5N61_12970	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J5N61_12985	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5N61_13000	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J5N61_13010	COG0649	NAD binding
J5N61_13010	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5N61_13020	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5N61_13035	COG2205	protein histidine kinase activity
J5N61_13040	COG0745	RESPONSE REGULATOR receiver
J5N61_13060	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5N61_13070	COG2814	Major facilitator Superfamily
J5N61_13090	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J5N61_13095	COG1309	transcriptional regulator
J5N61_13115	COG1063	alcohol dehydrogenase
J5N61_13120	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5N61_13170	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
J5N61_13175	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J5N61_13215	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J5N61_13240	COG1968	undecaprenyl-diphosphatase activity
J5N61_13305	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J5N61_13310	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J5N61_13315	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5N61_13375	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5N61_13385	COG1764	response to oxidative stress
J5N61_13410	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5N61_13410	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5N61_13425	COG0037	tRNA processing
J5N61_13435	COG0248	Ppx GppA phosphatase
J5N61_13460	COG0072	phenylalanine-tRNA ligase activity
J5N61_13495	COG1238	metal cluster binding
J5N61_13500	COG0625	glutathione transferase activity
J5N61_13520	COG0318	PFAM AMP-dependent synthetase and ligase
J5N61_13525	COG3028	Belongs to the UPF0307 family
J5N61_13550	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J5N61_13555	COG0617	tRNA 3'-terminal CCA addition
J5N61_13560	COG1555	photosystem II stabilization
J5N61_13565	COG3956	TIGRFAM MazG family protein
J5N61_13575	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5N61_13595	COG0784	Response regulator, receiver
J5N61_13595	COG2205	protein histidine kinase activity
J5N61_13595	COG5002	protein histidine kinase activity
J5N61_13600	COG1024	Enoyl-CoA hydratase
J5N61_13605	COG2084	Dehydrogenase
J5N61_13610	COG3622	Belongs to the hyi family
J5N61_13625	COG0004	ammonium transporteR
J5N61_13630	COG0300	oxidoreductase activity
J5N61_13660	COG2814	Major facilitator Superfamily
J5N61_13785	COG4626	Terminase
J5N61_13785	COG1802	Transcriptional regulator
J5N61_13835	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5N61_13895	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J5N61_13905	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J5N61_13925	COG0084	hydrolase, TatD family'
J5N61_13930	COG0726	polysaccharide deacetylase
J5N61_13940	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J5N61_13955	COG0431	NADPH-dependent FMN reductase
J5N61_13960	COG0798	PFAM Bile acid sodium symporter
J5N61_13970	COG0640	Transcriptional regulator
J5N61_13980	COG3243	poly(R)-hydroxyalkanoic acid synthase
J5N61_13995	COG0440	acetolactate synthase activity
J5N61_14000	COG0028	Belongs to the TPP enzyme family
J5N61_14020	COG1466	dna polymerase III delta subunit
J5N61_14030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5N61_14035	COG1136	(ABC) transporter
J5N61_14035	COG0577	efflux transmembrane transporter activity
J5N61_14040	COG1538	Outer membrane efflux protein
J5N61_14065	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J5N61_14070	COG1162	GTPase activity
J5N61_14105	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J5N61_14110	COG2003	Belongs to the UPF0758 family
J5N61_14115	COG3781	membrane
J5N61_14120	COG0613	PHP domain protein
J5N61_14130	COG2350	Protein conserved in bacteria
J5N61_14150	COG1666	GTP binding
J5N61_14165	COG1956	GAF domain-containing protein
J5N61_14170	COG1607	acyl-coa hydrolase
J5N61_14230	COG2199	diguanylate cyclase activity
J5N61_14240	COG1408	metallophosphoesterase
J5N61_14245	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5N61_14255	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J5N61_14280	COG0793	Belongs to the peptidase S41A family
J5N61_14295	COG2267	carboxylic ester hydrolase activity
J5N61_14305	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J5N61_14310	COG0857	belongs to the CobB CobQ family
J5N61_14310	COG0280	phosphate acetyltransferase
J5N61_14325	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
J5N61_14325	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
J5N61_14345	COG0740	serine-type endopeptidase activity
J5N61_14360	COG4774	siderophore transport
J5N61_14370	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J5N61_14380	COG2813	Specifically methylates the guanine in position
J5N61_14380	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5N61_14405	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5N61_14440	COG1295	ribonuclease BN
J5N61_14460	COG0179	Fumarylacetoacetate (FAA) hydrolase
J5N61_14500	COG0557	exoribonuclease II activity
J5N61_14510	COG0339	signal peptide processing
J5N61_14530	COG0697	spore germination
J5N61_14565	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J5N61_14570	COG1960	acyl-CoA dehydrogenase activity
J5N61_14635	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J5N61_14650	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J5N61_14675	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J5N61_14700	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J5N61_14720	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J5N61_14735	COG0626	cystathionine gamma-synthase activity
J5N61_14740	COG0433	COG0433 Predicted ATPase
J5N61_14750	COG1959	2 iron, 2 sulfur cluster binding
J5N61_14765	COG1301	dicarboxylic acid transport
J5N61_14770	COG1946	Acyl-CoA thioesterase
J5N61_14775	COG2937	Belongs to the GPAT DAPAT family
J5N61_14790	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J5N61_14795	COG1040	competence protein
J5N61_14810	COG0598	Magnesium transport protein CorA
J5N61_14825	COG2854	intermembrane phospholipid transfer
J5N61_14830	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J5N61_14835	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J5N61_14840	COG1127	ABC transporter
J5N61_14845	COG0513	Belongs to the DEAD box helicase family
J5N61_14865	COG0408	coproporphyrinogen oxidase activity
J5N61_14880	COG1960	acyl-CoA dehydrogenase activity
J5N61_14890	COG1983	PspC domain protein
J5N61_14895	COG0517	IMP dehydrogenase activity
J5N61_14895	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J5N61_14895	COG0617	tRNA 3'-terminal CCA addition
J5N61_14905	COG0471	metal ion transport
J5N61_14955	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5N61_14970	COG2226	methyltransferase
J5N61_14980	COG1192	Involved in chromosome partitioning
J5N61_14985	COG0628	permease
J5N61_14990	COG2032	superoxide dismutase activity
J5N61_14995	COG1289	transmembrane transporter activity
J5N61_15015	COG2249	NAD(P)H dehydrogenase (quinone) activity
J5N61_15020	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J5N61_15035	COG0277	FAD linked oxidase domain protein
J5N61_15040	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5N61_15045	COG5006	permease, DMT superfamily
J5N61_15065	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J5N61_15070	COG5380	lipid catabolic process
J5N61_15075	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J5N61_15080	COG0335	large ribosomal subunit rRNA binding
J5N61_15090	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J5N61_15095	COG0228	four-way junction DNA binding
J5N61_15130	COG4968	Prepilin-type N-terminal cleavage methylation domain
J5N61_15135	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J5N61_15140	COG0194	GDP metabolic process
J5N61_15150	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5N61_15170	COG3307	-O-antigen
J5N61_15180	COG4969	Belongs to the N-Me-Phe pilin family
J5N61_15250	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
J5N61_15255	COG1704	LemA family
J5N61_15260	COG0493	'glutamate synthase
J5N61_15265	COG0070	glutamate synthase
J5N61_15265	COG0069	glutamate synthase activity
J5N61_15265	COG0067	glutamate synthase
J5N61_15315	COG2226	methyltransferase
J5N61_15325	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5N61_15330	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J5N61_15350	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
J5N61_15375	COG0833	amino acid
J5N61_15430	COG3293	Transposase
J5N61_15445	COG0488	(ABC) transporter
J5N61_15455	COG4221	oxidoreductase activity
J5N61_15460	COG3320	Male sterility
J5N61_15460	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5N61_15465	COG0789	Transcriptional regulator
J5N61_15470	COG0477	Major facilitator Superfamily
J5N61_15510	COG0427	acetyl-CoA hydrolase
J5N61_15540	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J5N61_15560	COG0659	secondary active sulfate transmembrane transporter activity
J5N61_15575	COG2329	Antibiotic biosynthesis monooxygenase
J5N61_15600	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J5N61_15745	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J5N61_15760	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
J5N61_15770	COG1335	isochorismatase
J5N61_15780	COG1012	belongs to the aldehyde dehydrogenase family
J5N61_15785	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J5N61_15800	COG0629	single-stranded DNA binding
J5N61_15805	COG2814	Major facilitator Superfamily
J5N61_15820	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5N61_15830	COG1028	Short-chain dehydrogenase reductase Sdr
J5N61_15830	COG3321	synthase
J5N61_15830	COG0604	alcohol dehydrogenase
J5N61_15835	COG1309	transcriptional regulator
J5N61_15880	COG1335	isochorismatase
J5N61_15885	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J5N61_15895	COG0668	transmembrane transport
J5N61_15900	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J5N61_15905	COG1519	Transferase
J5N61_15910	COG1902	pentaerythritol trinitrate reductase activity
J5N61_15940	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J5N61_15945	COG0259	pyridoxamine-phosphate oxidase activity
J5N61_15965	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J5N61_15965	COG0426	domain, Protein
J5N61_15970	COG4774	siderophore transport
J5N61_15975	COG2119	membrane
J5N61_16010	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J5N61_16020	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J5N61_16040	COG0189	ligase activity
J5N61_16045	COG0386	Belongs to the glutathione peroxidase family
J5N61_16080	COG0708	Exodeoxyribonuclease III
J5N61_16085	COG1393	Belongs to the ArsC family
J5N61_16100	COG3293	Transposase
J5N61_16140	COG1247	-acetyltransferase
J5N61_16175	COG0534	Mate efflux family protein
J5N61_16185	COG3150	esterase
J5N61_16220	COG2826	transposase and inactivated derivatives, IS30 family
J5N61_16235	COG2918	glutathione biosynthetic process
J5N61_16250	COG2733	membrane
J5N61_16260	COG0436	Aminotransferase
J5N61_16265	COG0534	Mate efflux family protein
J5N61_16300	COG0583	DNA-binding transcription factor activity
J5N61_16305	COG2801	Transposase and inactivated derivatives
J5N61_16350	COG0560	Phosphoserine phosphatase
J5N61_16350	COG3830	Belongs to the UPF0237 family
J5N61_16370	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5N61_16375	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J5N61_16380	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J5N61_16390	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J5N61_16420	COG2205	protein histidine kinase activity
J5N61_16460	COG1335	isochorismatase
J5N61_16465	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5N61_16475	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J5N61_16490	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J5N61_16500	COG2133	pyrroloquinoline quinone binding
J5N61_16505	COG2983	Belongs to the UPF0260 family
J5N61_16510	COG5487	UPF0391 membrane protein
J5N61_16525	COG0739	heme binding
J5N61_16535	COG2818	Glycosylase
J5N61_16540	COG1064	alcohol dehydrogenase
J5N61_16545	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5N61_16555	COG0583	DNA-binding transcription factor activity
J5N61_16560	COG0656	L-ascorbic acid biosynthetic process
J5N61_16565	COG2814	Major facilitator Superfamily
J5N61_16595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5N61_16600	COG1309	transcriptional regulator
J5N61_16610	COG2233	PERMEase
J5N61_16655	COG0733	neurotransmitter:sodium symporter activity
J5N61_16660	COG1012	belongs to the aldehyde dehydrogenase family
J5N61_16705	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5N61_16710	COG0657	acetylesterase activity
J5N61_16735	COG0443	Heat shock 70 kDa protein
J5N61_16740	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
J5N61_16765	COG2951	lytic endotransglycosylase activity
J5N61_16770	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J5N61_16785	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J5N61_16805	COG1960	acyl-CoA dehydrogenase activity
J5N61_16810	COG0583	DNA-binding transcription factor activity
J5N61_16820	COG0861	Integral membrane protein TerC family
J5N61_16830	COG0754	glutathionylspermidine amidase activity
J5N61_16840	COG0402	S-adenosylhomocysteine deaminase activity
J5N61_16870	COG0706	membrane insertase activity