locus-tag class description ABEKA_0002 PF13356 Arm DNA-binding domain ABEKA_0002 PF00589 Phage integrase family ABEKA_0035 PF09669 Phage regulatory protein Rha (Phage_pRha) ABEKA_0035 PF10549 ORF11CD3 domain ABEKA_0042 PF00436 Single-strand binding protein family ABEKA_0046 PF13356 Arm DNA-binding domain ABEKA_0046 PF00589 Phage integrase family ABEKA_0047 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABEKA_0047 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABEKA_0048 PF03061 Thioesterase superfamily ABEKA_0049 PF00490 Delta-aminolevulinic acid dehydratase ABEKA_0050 PF01266 FAD dependent oxidoreductase ABEKA_0051 PF01370 NAD dependent epimerase/dehydratase family ABEKA_0054 PF12320 Type 5 capsule protein repressor C-terminal domain ABEKA_0054 PF00149 Calcineurin-like phosphoesterase ABEKA_0057 PF01168 Alanine racemase, N-terminal domain ABEKA_0058 PF00437 Type II/IV secretion system protein ABEKA_0059 PF00437 Type II/IV secretion system protein ABEKA_0060 PF01475 Ferric uptake regulator family ABEKA_0061 PF04355 SmpA / OmlA family ABEKA_0062 PF03658 RnfH family Ubiquitin ABEKA_0064 PF01814 Hemerythrin HHE cation binding domain ABEKA_0065 PF13230 Glutamine amidotransferases class-II ABEKA_0066 PF00696 Amino acid kinase family ABEKA_0067 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABEKA_0067 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABEKA_0067 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABEKA_0067 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABEKA_0068 PF00692 dUTPase ABEKA_0069 PF00580 UvrD/REP helicase N-terminal domain ABEKA_0069 PF13361 UvrD-like helicase C-terminal domain ABEKA_0070 PF13488 Glycine zipper ABEKA_0070 PF00691 OmpA family ABEKA_0071 PF01553 Acyltransferase ABEKA_0073 PF03775 Septum formation inhibitor MinC, C-terminal domain ABEKA_0074 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABEKA_0075 PF03776 Septum formation topological specificity factor MinE ABEKA_0077 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ABEKA_0077 PF17854 FtsK alpha domain ABEKA_0077 PF09397 Ftsk gamma domain ABEKA_0077 PF01580 FtsK/SpoIIIE family ABEKA_0078 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_0079 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABEKA_0080 PF04376 Arginine-tRNA-protein transferase, N terminus ABEKA_0080 PF04377 Arginine-tRNA-protein transferase, C terminus ABEKA_0081 PF00583 Acetyltransferase (GNAT) family ABEKA_0083 PF03143 Elongation factor Tu C-terminal domain ABEKA_0083 PF00009 Elongation factor Tu GTP binding domain ABEKA_0083 PF03144 Elongation factor Tu domain 2 ABEKA_0084 PF00679 Elongation factor G C-terminus ABEKA_0084 PF14492 Elongation Factor G, domain II ABEKA_0084 PF03764 Elongation factor G, domain IV ABEKA_0084 PF00009 Elongation factor Tu GTP binding domain ABEKA_0084 PF03144 Elongation factor Tu domain 2 ABEKA_0085 PF00177 Ribosomal protein S7p/S5e ABEKA_0086 PF00164 Ribosomal protein S12/S23 ABEKA_0088 PF00109 Beta-ketoacyl synthase, N-terminal domain ABEKA_0088 PF02801 Beta-ketoacyl synthase, C-terminal domain ABEKA_0089 PF03653 Uncharacterised protein family (UPF0093) ABEKA_0090 PF00324 Amino acid permease ABEKA_0091 PF01042 Endoribonuclease L-PSP ABEKA_0092 PF01168 Alanine racemase, N-terminal domain ABEKA_0092 PF00842 Alanine racemase, C-terminal domain ABEKA_0093 PF01266 FAD dependent oxidoreductase ABEKA_0094 PF01037 Lrp/AsnC ligand binding domain ABEKA_0095 PF04972 BON domain ABEKA_0095 PF01476 LysM domain ABEKA_0096 PF00550 Phosphopantetheine attachment site ABEKA_0098 PF00698 Acyl transferase domain ABEKA_0099 PF01783 Ribosomal L32p protein family ABEKA_0100 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABEKA_0101 PF04315 Elongation factor P hydroxylase ABEKA_0102 PF01300 Telomere recombination ABEKA_0105 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_0106 PF02616 Segregation and condensation protein ScpA ABEKA_0107 PF04079 Segregation and condensation complex subunit ScpB ABEKA_0108 PF00849 RNA pseudouridylate synthase ABEKA_0108 PF01479 S4 domain ABEKA_0109 PF00005 ABC transporter ABEKA_0109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABEKA_0110 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_0110 PF12911 N-terminal TM domain of oligopeptide transport permease C ABEKA_0111 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_0112 PF01432 Peptidase family M3 ABEKA_0115 PF07715 TonB-dependent Receptor Plug Domain ABEKA_0115 PF00593 TonB dependent receptor ABEKA_0117 PF01618 MotA/TolQ/ExbB proton channel family ABEKA_0118 PF02472 Biopolymer transport protein ExbD/TolR ABEKA_0119 PF02472 Biopolymer transport protein ExbD/TolR ABEKA_0120 PF00210 Ferritin-like domain ABEKA_0121 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ABEKA_0122 PF00533 BRCA1 C Terminus (BRCT) domain ABEKA_0122 PF01653 NAD-dependent DNA ligase adenylation domain ABEKA_0122 PF03120 NAD-dependent DNA ligase OB-fold domain ABEKA_0122 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABEKA_0122 PF12826 Helix-hairpin-helix motif ABEKA_0124 PF06470 SMC proteins Flexible Hinge Domain ABEKA_0124 PF02463 RecF/RecN/SMC N terminal domain ABEKA_0126 PF01925 Sulfite exporter TauE/SafE ABEKA_0127 PF03309 Type III pantothenate kinase ABEKA_0127 PF02237 Biotin protein ligase C terminal domain ABEKA_0127 PF03099 Biotin/lipoate A/B protein ligase family ABEKA_0128 PF03309 Type III pantothenate kinase ABEKA_0131 PF00448 SRP54-type protein, GTPase domain ABEKA_0131 PF02881 SRP54-type protein, helical bundle domain ABEKA_0131 PF02978 Signal peptide binding domain ABEKA_0134 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_0135 PF07848 PaaX-like protein ABEKA_0135 PF08223 PaaX-like protein C-terminal domain ABEKA_0136 PF00501 AMP-binding enzyme ABEKA_0136 PF14535 AMP-binding enzyme C-terminal domain ABEKA_0137 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_0140 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABEKA_0140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABEKA_0140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABEKA_0141 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_0142 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_0143 PF00175 Oxidoreductase NAD-binding domain ABEKA_0143 PF00970 Oxidoreductase FAD-binding domain ABEKA_0143 PF00111 2Fe-2S iron-sulfur cluster binding domain ABEKA_0144 PF01883 Iron-sulfur cluster assembly protein ABEKA_0145 PF05138 Phenylacetic acid catabolic protein ABEKA_0146 PF06243 Phenylacetic acid degradation B ABEKA_0147 PF05138 Phenylacetic acid catabolic protein ABEKA_0148 PF00171 Aldehyde dehydrogenase family ABEKA_0148 PF01575 MaoC like domain ABEKA_0149 PF07690 Major Facilitator Superfamily ABEKA_0150 PF01207 Dihydrouridine synthase (Dus) ABEKA_0152 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABEKA_0152 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABEKA_0153 PF00893 Small Multidrug Resistance protein ABEKA_0154 PF00834 Ribulose-phosphate 3 epimerase family ABEKA_0157 PF05987 Bacterial protein of unknown function (DUF898) ABEKA_0158 PF00756 Putative esterase ABEKA_0160 PF04445 Putative SAM-dependent methyltransferase ABEKA_0161 PF02673 Bacitracin resistance protein BacA ABEKA_0162 PF00814 Glycoprotease family ABEKA_0164 PF00293 NUDIX domain ABEKA_0172 PF04715 Anthranilate synthase component I, N terminal region ABEKA_0172 PF00425 chorismate binding enzyme ABEKA_0173 PF00155 Aminotransferase class I and II ABEKA_0174 PF00815 Histidinol dehydrogenase ABEKA_0175 PF01634 ATP phosphoribosyltransferase ABEKA_0176 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABEKA_0177 PF01722 BolA-like protein ABEKA_0178 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABEKA_0179 PF04963 Sigma-54 factor, core binding domain ABEKA_0179 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABEKA_0179 PF04552 Sigma-54, DNA binding domain ABEKA_0188 PF00795 Carbon-nitrogen hydrolase ABEKA_0189 PF02566 OsmC-like protein ABEKA_0191 PF00437 Type II/IV secretion system protein ABEKA_0195 PF01367 5'-3' exonuclease, C-terminal SAM fold ABEKA_0195 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABEKA_0195 PF00476 DNA polymerase family A ABEKA_0195 PF01612 3'-5' exonuclease ABEKA_0196 PF02325 YGGT family ABEKA_0197 PF03807 NADP oxidoreductase coenzyme F420-dependent ABEKA_0197 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABEKA_0198 PF01171 PP-loop family ABEKA_0198 PF09179 TilS substrate binding domain ABEKA_0198 PF11734 TilS substrate C-terminal domain ABEKA_0199 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABEKA_0200 PF02541 Ppx/GppA phosphatase family ABEKA_0201 PF00085 Thioredoxin ABEKA_0202 PF07497 Rho termination factor, RNA-binding domain ABEKA_0202 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABEKA_0202 PF07498 Rho termination factor, N-terminal domain ABEKA_0204 PF00216 Bacterial DNA-binding protein ABEKA_0205 PF03483 B3/4 domain ABEKA_0205 PF03484 tRNA synthetase B5 domain ABEKA_0205 PF03147 Ferredoxin-fold anticodon binding domain ABEKA_0205 PF01588 Putative tRNA binding domain ABEKA_0205 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABEKA_0206 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABEKA_0206 PF01409 tRNA synthetases class II core domain (F) ABEKA_0209 PF00453 Ribosomal protein L20 ABEKA_0210 PF01632 Ribosomal protein L35 ABEKA_0211 PF09335 SNARE associated Golgi protein ABEKA_0213 PF00043 Glutathione S-transferase, C-terminal domain ABEKA_0213 PF02798 Glutathione S-transferase, N-terminal domain ABEKA_0214 PF00011 Hsp20/alpha crystallin family ABEKA_0217 PF00707 Translation initiation factor IF-3, C-terminal domain ABEKA_0217 PF05198 Translation initiation factor IF-3, N-terminal domain ABEKA_0218 PF03129 Anticodon binding domain ABEKA_0218 PF02824 TGS domain ABEKA_0218 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABEKA_0218 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABEKA_0220 PF04030 D-arabinono-1,4-lactone oxidase ABEKA_0220 PF01565 FAD binding domain ABEKA_0221 PF00501 AMP-binding enzyme ABEKA_0221 PF13193 AMP-binding enzyme C-terminal domain ABEKA_0222 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_0223 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABEKA_0224 PF07715 TonB-dependent Receptor Plug Domain ABEKA_0224 PF00593 TonB dependent receptor ABEKA_0225 PF01923 Cobalamin adenosyltransferase ABEKA_0228 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABEKA_0230 PF00486 Transcriptional regulatory protein, C terminal ABEKA_0230 PF00072 Response regulator receiver domain ABEKA_0231 PF00672 HAMP domain ABEKA_0231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0231 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_0233 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_0233 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_0233 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_0233 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_0234 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_0234 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_0234 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_0234 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_0236 PF06146 Phosphate-starvation-inducible E ABEKA_0240 PF07715 TonB-dependent Receptor Plug Domain ABEKA_0240 PF00593 TonB dependent receptor ABEKA_0242 PF02938 GAD domain ABEKA_0242 PF00152 tRNA synthetases class II (D, K and N) ABEKA_0242 PF01336 OB-fold nucleic acid binding domain ABEKA_0250 PF11380 Stealth protein CR2, conserved region 2 ABEKA_0250 PF17102 Stealth protein CR3, conserved region 3 ABEKA_0250 PF17101 Stealth protein CR1, conserved region 1 ABEKA_0252 PF01063 Amino-transferase class IV ABEKA_0253 PF08335 GlnD PII-uridylyltransferase ABEKA_0253 PF03710 Glutamate-ammonia ligase adenylyltransferase ABEKA_0254 PF01385 Probable transposase ABEKA_0254 PF07282 Putative transposase DNA-binding domain ABEKA_0254 PF12323 Helix-turn-helix domain ABEKA_0257 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0257 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_0258 PF04751 Protein of unknown function (DUF615) ABEKA_0259 PF00381 PTS HPr component phosphorylation site ABEKA_0260 PF03668 P-loop ATPase protein family ABEKA_0261 PF02569 Pantoate-beta-alanine ligase ABEKA_0262 PF02548 Ketopantoate hydroxymethyltransferase ABEKA_0263 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABEKA_0264 PF12627 Probable RNA and SrmB- binding site of polymerase A ABEKA_0264 PF12626 Polymerase A arginine-rich C-terminus ABEKA_0264 PF01743 Poly A polymerase head domain ABEKA_0265 PF03819 MazG nucleotide pyrophosphohydrolase domain ABEKA_0266 PF00106 short chain dehydrogenase ABEKA_0268 PF01926 50S ribosome-binding GTPase ABEKA_0268 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABEKA_0269 PF13360 PQQ-like domain ABEKA_0269 PF01011 PQQ enzyme repeat ABEKA_0271 PF13393 Histidyl-tRNA synthetase ABEKA_0271 PF03129 Anticodon binding domain ABEKA_0272 PF04551 GcpE protein ABEKA_0273 PF13464 Domain of unknown function (DUF4115) ABEKA_0275 PF04055 Radical SAM superfamily ABEKA_0276 PF00334 Nucleoside diphosphate kinase ABEKA_0277 PF04384 Iron-sulphur cluster assembly ABEKA_0278 PF01569 PAP2 superfamily ABEKA_0279 PF13439 Glycosyltransferase Family 4 ABEKA_0279 PF00534 Glycosyl transferases group 1 ABEKA_0282 PF13936 Helix-turn-helix domain ABEKA_0282 PF00665 Integrase core domain ABEKA_0283 PF00665 Integrase core domain ABEKA_0283 PF13936 Helix-turn-helix domain ABEKA_0288 PF00665 Integrase core domain ABEKA_0288 PF13936 Helix-turn-helix domain ABEKA_0289 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABEKA_0289 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABEKA_0290 PF10369 Small subunit of acetolactate synthase ABEKA_0291 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABEKA_0291 PF00205 Thiamine pyrophosphate enzyme, central domain ABEKA_0291 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABEKA_0293 PF00133 tRNA synthetases class I (I, L, M and V) ABEKA_0293 PF08264 Anticodon-binding domain of tRNA ABEKA_0293 PF13603 Leucyl-tRNA synthetase, Domain 2 ABEKA_0293 PF09334 tRNA synthetases class I (M) ABEKA_0296 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABEKA_0297 PF02687 FtsX-like permease family ABEKA_0297 PF00005 ABC transporter ABEKA_0297 PF12704 MacB-like periplasmic core domain ABEKA_0298 PF02321 Outer membrane efflux protein ABEKA_0300 PF00899 ThiF family ABEKA_0302 PF00929 Exonuclease ABEKA_0303 PF03193 RsgA GTPase ABEKA_0305 PF00462 Glutaredoxin ABEKA_0306 PF02556 Preprotein translocase subunit SecB ABEKA_0308 PF01026 TatD related DNase ABEKA_0311 PF00009 Elongation factor Tu GTP binding domain ABEKA_0311 PF03144 Elongation factor Tu domain 2 ABEKA_0311 PF16658 Class II release factor RF3, C-terminal domain ABEKA_0314 PF03572 Peptidase family S41 ABEKA_0314 PF17804 Tail specific protease N-terminal domain ABEKA_0314 PF11818 C-terminal domain of tail specific protease (DUF3340) ABEKA_0314 PF00595 PDZ domain ABEKA_0315 PF00933 Glycosyl hydrolase family 3 N terminal domain ABEKA_0318 PF00171 Aldehyde dehydrogenase family ABEKA_0320 PF00871 Acetokinase family ABEKA_0321 PF07085 DRTGG domain ABEKA_0321 PF01515 Phosphate acetyl/butaryl transferase ABEKA_0325 PF05681 Fumarate hydratase (Fumerase) ABEKA_0325 PF05683 Fumarase C-terminus ABEKA_0329 PF07724 AAA domain (Cdc48 subfamily) ABEKA_0329 PF10431 C-terminal, D2-small domain, of ClpB protein ABEKA_0329 PF06689 ClpX C4-type zinc finger ABEKA_0330 PF00574 Clp protease ABEKA_0331 PF05697 Bacterial trigger factor protein (TF) ABEKA_0331 PF05698 Bacterial trigger factor protein (TF) C-terminus ABEKA_0331 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_0332 PF00593 TonB dependent receptor ABEKA_0332 PF07715 TonB-dependent Receptor Plug Domain ABEKA_0333 PF00593 TonB dependent receptor ABEKA_0333 PF07715 TonB-dependent Receptor Plug Domain ABEKA_0334 PF18331 PKHD-type hydroxylase C-terminal domain ABEKA_0334 PF13640 2OG-Fe(II) oxygenase superfamily ABEKA_0335 PF00682 HMGL-like ABEKA_0335 PF08502 LeuA allosteric (dimerisation) domain ABEKA_0336 PF00561 alpha/beta hydrolase fold ABEKA_0337 PF07021 Methionine biosynthesis protein MetW ABEKA_0337 PF00561 alpha/beta hydrolase fold ABEKA_0340 PF01725 Ham1 family ABEKA_0343 PF02416 mttA/Hcf106 family ABEKA_0344 PF02416 mttA/Hcf106 family ABEKA_0345 PF00902 Sec-independent protein translocase protein (TatC) ABEKA_0348 PF01790 Prolipoprotein diacylglyceryl transferase ABEKA_0354 PF00303 Thymidylate synthase ABEKA_0356 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_0357 PF00589 Phage integrase family ABEKA_0357 PF02899 Phage integrase, N-terminal SAM-like domain ABEKA_0359 PF13276 HTH-like domain ABEKA_0359 PF13333 Integrase core domain ABEKA_0359 PF00665 Integrase core domain ABEKA_0360 PF01527 Transposase ABEKA_0362 PF13276 HTH-like domain ABEKA_0362 PF00665 Integrase core domain ABEKA_0362 PF13333 Integrase core domain ABEKA_0363 PF01527 Transposase ABEKA_0364 PF13495 Phage integrase, N-terminal SAM-like domain ABEKA_0364 PF00589 Phage integrase family ABEKA_0366 PF01527 Transposase ABEKA_0367 PF13276 HTH-like domain ABEKA_0367 PF00665 Integrase core domain ABEKA_0367 PF13333 Integrase core domain ABEKA_0370 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_0370 PF13007 Transposase C of IS166 homeodomain ABEKA_0370 PF13817 IS66 C-terminal element ABEKA_0370 PF03050 Transposase IS66 family ABEKA_0373 PF00303 Thymidylate synthase ABEKA_0374 PF13276 HTH-like domain ABEKA_0374 PF00665 Integrase core domain ABEKA_0374 PF13333 Integrase core domain ABEKA_0375 PF13737 Transposase DDE domain ABEKA_0378 PF13007 Transposase C of IS166 homeodomain ABEKA_0378 PF13817 IS66 C-terminal element ABEKA_0378 PF03050 Transposase IS66 family ABEKA_0378 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_0385 PF00149 Calcineurin-like phosphoesterase ABEKA_0387 PF13333 Integrase core domain ABEKA_0387 PF00665 Integrase core domain ABEKA_0387 PF13276 HTH-like domain ABEKA_0388 PF01527 Transposase ABEKA_0391 PF00303 Thymidylate synthase ABEKA_0392 PF00186 Dihydrofolate reductase ABEKA_0395 PF01625 Peptide methionine sulfoxide reductase ABEKA_0397 PF01618 MotA/TolQ/ExbB proton channel family ABEKA_0399 PF00551 Formyl transferase ABEKA_0399 PF01842 ACT domain ABEKA_0400 PF00440 Bacterial regulatory proteins, tetR family ABEKA_0400 PF08360 QacR-like protein, C-terminal region ABEKA_0401 PF00171 Aldehyde dehydrogenase family ABEKA_0403 PF00830 Ribosomal L28 family ABEKA_0404 PF00471 Ribosomal protein L33 ABEKA_0405 PF02254 TrkA-N domain ABEKA_0405 PF00999 Sodium/hydrogen exchanger family ABEKA_0409 PF13361 UvrD-like helicase C-terminal domain ABEKA_0409 PF00580 UvrD/REP helicase N-terminal domain ABEKA_0410 PF02595 Glycerate kinase family ABEKA_0413 PF08272 Topoisomerase I zinc-ribbon-like ABEKA_0413 PF01131 DNA topoisomerase ABEKA_0413 PF01751 Toprim domain ABEKA_0413 PF01396 Topoisomerase DNA binding C4 zinc finger ABEKA_0416 PF04102 SlyX ABEKA_0417 PF16326 ABC transporter C-terminal domain ABEKA_0417 PF12848 ABC transporter ABEKA_0417 PF00005 ABC transporter ABEKA_0418 PF03279 Bacterial lipid A biosynthesis acyltransferase ABEKA_0420 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABEKA_0420 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABEKA_0424 PF01416 tRNA pseudouridine synthase ABEKA_0427 PF01176 Translation initiation factor 1A / IF-1 ABEKA_0430 PF00180 Isocitrate/isopropylmalate dehydrogenase ABEKA_0432 PF00694 Aconitase C-terminal domain ABEKA_0433 PF00330 Aconitase family (aconitate hydratase) ABEKA_0435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_0435 PF03466 LysR substrate binding domain ABEKA_0439 PF00293 NUDIX domain ABEKA_0440 PF05524 PEP-utilising enzyme, N-terminal ABEKA_0440 PF00391 PEP-utilising enzyme, mobile domain ABEKA_0440 PF01590 GAF domain ABEKA_0440 PF02896 PEP-utilising enzyme, TIM barrel domain ABEKA_0445 PF06628 Catalase-related immune-responsive ABEKA_0445 PF00199 Catalase ABEKA_0447 PF12706 Beta-lactamase superfamily domain ABEKA_0450 PF16916 Dimerisation domain of Zinc Transporter ABEKA_0450 PF01545 Cation efflux family ABEKA_0452 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_0452 PF14759 Reductase C-terminal ABEKA_0453 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABEKA_0454 PF00106 short chain dehydrogenase ABEKA_0455 PF00355 Rieske [2Fe-2S] domain ABEKA_0456 PF00866 Ring hydroxylating beta subunit ABEKA_0457 PF00355 Rieske [2Fe-2S] domain ABEKA_0457 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABEKA_0458 PF00355 Rieske [2Fe-2S] domain ABEKA_0458 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABEKA_0459 PF03466 LysR substrate binding domain ABEKA_0459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_0460 PF00561 alpha/beta hydrolase fold ABEKA_0461 PF03573 outer membrane porin, OprD family ABEKA_0462 PF07836 DmpG-like communication domain ABEKA_0462 PF00682 HMGL-like ABEKA_0463 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ABEKA_0463 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABEKA_0464 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABEKA_0465 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_0466 PF00849 RNA pseudouridylate synthase ABEKA_0466 PF01479 S4 domain ABEKA_0467 PF00575 S1 RNA binding domain ABEKA_0467 PF12111 Polyribonucleotide phosphorylase C terminal ABEKA_0467 PF10150 Ribonuclease E/G family ABEKA_0468 PF00501 AMP-binding enzyme ABEKA_0468 PF13193 AMP-binding enzyme C-terminal domain ABEKA_0473 PF04024 PspC domain ABEKA_0475 PF00939 Sodium:sulfate symporter transmembrane region ABEKA_0479 PF02091 Glycyl-tRNA synthetase alpha subunit ABEKA_0480 PF05746 DALR anticodon binding domain ABEKA_0480 PF02092 Glycyl-tRNA synthetase beta subunit ABEKA_0484 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABEKA_0484 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABEKA_0489 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABEKA_0489 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_0491 PF03884 DNA gyrase inhibitor YacG ABEKA_0493 PF00753 Metallo-beta-lactamase superfamily ABEKA_0494 PF00762 Ferrochelatase ABEKA_0497 PF01177 Asp/Glu/Hydantoin racemase ABEKA_0500 PF01206 Sulfurtransferase TusA ABEKA_0501 PF00571 CBS domain ABEKA_0501 PF03471 Transporter associated domain ABEKA_0502 PF00795 Carbon-nitrogen hydrolase ABEKA_0504 PF08334 Type II secretion system (T2SS), protein G ABEKA_0504 PF07963 Prokaryotic N-terminal methylation motif ABEKA_0505 PF00482 Type II secretion system (T2SS), protein F ABEKA_0506 PF00271 Helicase conserved C-terminal domain ABEKA_0506 PF18074 Primosomal protein N C-terminal domain ABEKA_0506 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABEKA_0506 PF00270 DEAD/DEAH box helicase ABEKA_0506 PF17764 3′ DNA-binding domain (3′BD) ABEKA_0507 PF00999 Sodium/hydrogen exchanger family ABEKA_0507 PF02254 TrkA-N domain ABEKA_0508 PF01430 Hsp33 protein ABEKA_0511 PF04325 Protein of unknown function (DUF465) ABEKA_0512 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABEKA_0512 PF03725 3' exoribonuclease family, domain 2 ABEKA_0512 PF00575 S1 RNA binding domain ABEKA_0512 PF00013 KH domain ABEKA_0512 PF01138 3' exoribonuclease family, domain 1 ABEKA_0513 PF00312 Ribosomal protein S15 ABEKA_0514 PF13538 UvrD-like helicase C-terminal domain ABEKA_0515 PF12705 PD-(D/E)XK nuclease superfamily ABEKA_0515 PF00580 UvrD/REP helicase N-terminal domain ABEKA_0515 PF13361 UvrD-like helicase C-terminal domain ABEKA_0516 PF17946 RecC C-terminal domain ABEKA_0518 PF03976 Polyphosphate kinase 2 (PPK2) ABEKA_0520 PF01209 ubiE/COQ5 methyltransferase family ABEKA_0522 PF03109 ABC1 family ABEKA_0525 PF09371 Tex-like protein N-terminal domain ABEKA_0525 PF00575 S1 RNA binding domain ABEKA_0525 PF17674 HHH domain ABEKA_0525 PF16921 Tex protein YqgF-like domain ABEKA_0527 PF00072 Response regulator receiver domain ABEKA_0527 PF00486 Transcriptional regulatory protein, C terminal ABEKA_0528 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_0528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0528 PF00672 HAMP domain ABEKA_0529 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABEKA_0529 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABEKA_0530 PF01323 DSBA-like thioredoxin domain ABEKA_0537 PF00183 Hsp90 protein ABEKA_0537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0539 PF03922 OmpW family ABEKA_0540 PF13726 Na+-H+ antiporter family ABEKA_0540 PF03553 Na+/H+ antiporter family ABEKA_0544 PF04983 RNA polymerase Rpb1, domain 3 ABEKA_0544 PF05000 RNA polymerase Rpb1, domain 4 ABEKA_0544 PF04998 RNA polymerase Rpb1, domain 5 ABEKA_0544 PF04997 RNA polymerase Rpb1, domain 1 ABEKA_0544 PF00623 RNA polymerase Rpb1, domain 2 ABEKA_0545 PF00562 RNA polymerase Rpb2, domain 6 ABEKA_0545 PF10385 RNA polymerase beta subunit external 1 domain ABEKA_0545 PF04565 RNA polymerase Rpb2, domain 3 ABEKA_0545 PF04561 RNA polymerase Rpb2, domain 2 ABEKA_0545 PF04560 RNA polymerase Rpb2, domain 7 ABEKA_0545 PF04563 RNA polymerase beta subunit ABEKA_0546 PF16320 Ribosomal protein L7/L12 dimerisation domain ABEKA_0546 PF00542 Ribosomal protein L7/L12 C-terminal domain ABEKA_0547 PF00466 Ribosomal protein L10 ABEKA_0548 PF00687 Ribosomal protein L1p/L10e family ABEKA_0549 PF03946 Ribosomal protein L11, N-terminal domain ABEKA_0549 PF00298 Ribosomal protein L11, RNA binding domain ABEKA_0550 PF02357 Transcription termination factor nusG ABEKA_0550 PF00467 KOW motif ABEKA_0551 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABEKA_0553 PF00009 Elongation factor Tu GTP binding domain ABEKA_0553 PF03144 Elongation factor Tu domain 2 ABEKA_0553 PF03143 Elongation factor Tu C-terminal domain ABEKA_0558 PF00425 chorismate binding enzyme ABEKA_0558 PF04715 Anthranilate synthase component I, N terminal region ABEKA_0559 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_0560 PF16697 Inner membrane component of T3SS, cytoplasmic domain ABEKA_0561 PF03958 Bacterial type II/III secretion system short domain ABEKA_0561 PF00263 Bacterial type II and III secretion system protein ABEKA_0564 PF00816 H-NS histone family ABEKA_0565 PF03061 Thioesterase superfamily ABEKA_0569 PF03900 Porphobilinogen deaminase, C-terminal domain ABEKA_0569 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABEKA_0570 PF00072 Response regulator receiver domain ABEKA_0570 PF04397 LytTr DNA-binding domain ABEKA_0571 PF06580 Histidine kinase ABEKA_0571 PF07694 5TMR of 5TMR-LYT ABEKA_0571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0572 PF00206 Lyase ABEKA_0572 PF14698 Argininosuccinate lyase C-terminal ABEKA_0573 PF04362 Bacterial Fe(2+) trafficking ABEKA_0575 PF01066 CDP-alcohol phosphatidyltransferase ABEKA_0577 PF02151 UvrB/uvrC motif ABEKA_0577 PF01541 GIY-YIG catalytic domain ABEKA_0577 PF08459 UvrC Helix-hairpin-helix N-terminal ABEKA_0578 PF10431 C-terminal, D2-small domain, of ClpB protein ABEKA_0578 PF07724 AAA domain (Cdc48 subfamily) ABEKA_0580 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_0580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABEKA_0580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABEKA_0581 PF00108 Thiolase, N-terminal domain ABEKA_0581 PF02803 Thiolase, C-terminal domain ABEKA_0585 PF03848 Tellurite resistance protein TehB ABEKA_0585 PF09313 Domain of unknown function (DUF1971) ABEKA_0594 PF00475 Imidazoleglycerol-phosphate dehydratase ABEKA_0595 PF00117 Glutamine amidotransferase class-I ABEKA_0596 PF07963 Prokaryotic N-terminal methylation motif ABEKA_0596 PF00114 Pilin (bacterial filament) ABEKA_0599 PF00977 Histidine biosynthesis protein ABEKA_0603 PF01636 Phosphotransferase enzyme family ABEKA_0604 PF00977 Histidine biosynthesis protein ABEKA_0610 PF02705 K+ potassium transporter ABEKA_0612 PF13356 Arm DNA-binding domain ABEKA_0612 PF00589 Phage integrase family ABEKA_0626 PF01593 Flavin containing amine oxidoreductase ABEKA_0627 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABEKA_0627 PF00578 AhpC/TSA family ABEKA_0628 PF00436 Single-strand binding protein family ABEKA_0629 PF07690 Major Facilitator Superfamily ABEKA_0631 PF02581 Thiamine monophosphate synthase ABEKA_0631 PF03070 TENA/THI-4/PQQC family ABEKA_0631 PF08543 Phosphomethylpyrimidine kinase ABEKA_0633 PF17755 UvrA DNA-binding domain ABEKA_0633 PF17760 UvrA interaction domain ABEKA_0636 PF07694 5TMR of 5TMR-LYT ABEKA_0636 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_0639 PF02028 BCCT, betaine/carnitine/choline family transporter ABEKA_0641 PF00474 Sodium:solute symporter family ABEKA_0642 PF04341 Protein of unknown function, DUF485 ABEKA_0643 PF09456 RcsC Alpha-Beta-Loop (ABL) ABEKA_0643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0643 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_0643 PF00072 Response regulator receiver domain ABEKA_0645 PF00072 Response regulator receiver domain ABEKA_0645 PF00196 Bacterial regulatory proteins, luxR family ABEKA_0646 PF03358 NADPH-dependent FMN reductase ABEKA_0647 PF00296 Luciferase-like monooxygenase ABEKA_0648 PF03441 FAD binding domain of DNA photolyase ABEKA_0648 PF00875 DNA photolyase ABEKA_0649 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_0649 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_0650 PF16177 Acetyl-coenzyme A synthetase N-terminus ABEKA_0650 PF00501 AMP-binding enzyme ABEKA_0650 PF13193 AMP-binding enzyme C-terminal domain ABEKA_0652 PF05656 Protein of unknown function (DUF805) ABEKA_0653 PF00924 Mechanosensitive ion channel ABEKA_0654 PF04452 RNA methyltransferase ABEKA_0656 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABEKA_0657 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_0659 PF03462 PCRF domain ABEKA_0659 PF00472 RF-1 domain ABEKA_0662 PF01368 DHH family ABEKA_0662 PF02272 DHHA1 domain ABEKA_0662 PF17768 RecJ OB domain ABEKA_0663 PF01243 Pyridoxamine 5'-phosphate oxidase ABEKA_0663 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABEKA_0664 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABEKA_0664 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABEKA_0664 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABEKA_0664 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABEKA_0665 PF00571 CBS domain ABEKA_0665 PF00478 IMP dehydrogenase / GMP reductase domain ABEKA_0666 PF03692 Putative zinc- or iron-chelating domain ABEKA_0667 PF01613 Flavin reductase like domain ABEKA_0667 PF00258 Flavodoxin ABEKA_0668 PF01169 Uncharacterized protein family UPF0016 ABEKA_0669 PF02817 e3 binding domain ABEKA_0669 PF00364 Biotin-requiring enzyme ABEKA_0669 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABEKA_0670 PF17831 Pyruvate dehydrogenase E1 component middle domain ABEKA_0670 PF00456 Transketolase, thiamine diphosphate binding domain ABEKA_0673 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABEKA_0674 PF12327 FtsZ family, C-terminal domain ABEKA_0674 PF00091 Tubulin/FtsZ family, GTPase domain ABEKA_0675 PF02491 SHS2 domain inserted in FTSA ABEKA_0676 PF03799 Cell division protein FtsQ ABEKA_0676 PF08478 POTRA domain, FtsQ-type ABEKA_0677 PF07478 D-ala D-ala ligase C-terminus ABEKA_0677 PF01820 D-ala D-ala ligase N-terminus ABEKA_0678 PF01225 Mur ligase family, catalytic domain ABEKA_0678 PF08245 Mur ligase middle domain ABEKA_0678 PF02875 Mur ligase family, glutamate ligase domain ABEKA_0679 PF03033 Glycosyltransferase family 28 N-terminal domain ABEKA_0679 PF04101 Glycosyltransferase family 28 C-terminal domain ABEKA_0682 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ABEKA_0682 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ABEKA_0685 PF07732 Multicopper oxidase ABEKA_0685 PF07731 Multicopper oxidase ABEKA_0685 PF00394 Multicopper oxidase ABEKA_0686 PF05275 Copper resistance protein B precursor (CopB) ABEKA_0689 PF00313 'Cold-shock' DNA-binding domain ABEKA_0690 PF00156 Phosphoribosyl transferase domain ABEKA_0691 PF03372 Endonuclease/Exonuclease/phosphatase family ABEKA_0694 PF07859 alpha/beta hydrolase fold ABEKA_0695 PF02525 Flavodoxin-like fold ABEKA_0697 PF07694 5TMR of 5TMR-LYT ABEKA_0697 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_0698 PF02683 Cytochrome C biogenesis protein transmembrane region ABEKA_0698 PF11412 Disulphide bond corrector protein DsbC ABEKA_0703 PF00583 Acetyltransferase (GNAT) family ABEKA_0706 PF00005 ABC transporter ABEKA_0707 PF00005 ABC transporter ABEKA_0707 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABEKA_0709 PF02653 Branched-chain amino acid transport system / permease component ABEKA_0711 PF00204 DNA gyrase B ABEKA_0711 PF00986 DNA gyrase B subunit, carboxyl terminus ABEKA_0711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0711 PF01751 Toprim domain ABEKA_0712 PF05728 Uncharacterised protein family (UPF0227) ABEKA_0714 PF13006 Insertion element 4 transposase N-terminal ABEKA_0714 PF01609 Transposase DDE domain ABEKA_0715 PF02600 Disulfide bond formation protein DsbB ABEKA_0716 PF04262 Glutamate-cysteine ligase ABEKA_0719 PF04286 Protein of unknown function (DUF445) ABEKA_0721 PF03485 Arginyl tRNA synthetase N terminal domain ABEKA_0721 PF05746 DALR anticodon binding domain ABEKA_0721 PF00750 tRNA synthetases class I (R) ABEKA_0723 PF02666 Phosphatidylserine decarboxylase ABEKA_0724 PF00581 Rhodanese-like domain ABEKA_0725 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABEKA_0725 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABEKA_0727 PF00199 Catalase ABEKA_0727 PF06628 Catalase-related immune-responsive ABEKA_0728 PF02580 D-Tyr-tRNA(Tyr) deacylase ABEKA_0729 PF01609 Transposase DDE domain ABEKA_0729 PF13006 Insertion element 4 transposase N-terminal ABEKA_0730 PF13006 Insertion element 4 transposase N-terminal ABEKA_0730 PF01609 Transposase DDE domain ABEKA_0735 PF17941 Polyphosphate kinase C-terminal domain 1 ABEKA_0735 PF02503 Polyphosphate kinase middle domain ABEKA_0735 PF13090 Polyphosphate kinase C-terminal domain 2 ABEKA_0735 PF13089 Polyphosphate kinase N-terminal domain ABEKA_0736 PF01758 Sodium Bile acid symporter family ABEKA_0737 PF00857 Isochorismatase family ABEKA_0738 PF07690 Major Facilitator Superfamily ABEKA_0740 PF00701 Dihydrodipicolinate synthetase family ABEKA_0742 PF01259 SAICAR synthetase ABEKA_0743 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_0743 PF16193 AAA C-terminal domain ABEKA_0743 PF12002 MgsA AAA+ ATPase C terminal ABEKA_0744 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_0744 PF00563 EAL domain ABEKA_0744 PF03707 Bacterial signalling protein N terminal repeat ABEKA_0745 PF03692 Putative zinc- or iron-chelating domain ABEKA_0746 PF07043 Protein of unknown function (DUF1328) ABEKA_0747 PF03023 Lipid II flippase MurJ ABEKA_0748 PF01510 N-acetylmuramoyl-L-alanine amidase ABEKA_0749 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABEKA_0749 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABEKA_0751 PF01138 3' exoribonuclease family, domain 1 ABEKA_0751 PF03725 3' exoribonuclease family, domain 2 ABEKA_0752 PF00440 Bacterial regulatory proteins, tetR family ABEKA_0753 PF01323 DSBA-like thioredoxin domain ABEKA_0755 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_0756 PF00106 short chain dehydrogenase ABEKA_0761 PF00583 Acetyltransferase (GNAT) family ABEKA_0761 PF00696 Amino acid kinase family ABEKA_0762 PF09084 NMT1/THI5 like ABEKA_0763 PF09084 NMT1/THI5 like ABEKA_0764 PF00296 Luciferase-like monooxygenase ABEKA_0765 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_0766 PF00005 ABC transporter ABEKA_0768 PF08362 YcdC-like protein, C-terminal region ABEKA_0768 PF00440 Bacterial regulatory proteins, tetR family ABEKA_0770 PF06574 FAD synthetase ABEKA_0770 PF01687 Riboflavin kinase ABEKA_0771 PF06827 Zinc finger found in FPG and IleRS ABEKA_0771 PF08264 Anticodon-binding domain of tRNA ABEKA_0771 PF00133 tRNA synthetases class I (I, L, M and V) ABEKA_0772 PF01252 Signal peptidase (SPase) II ABEKA_0773 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_0776 PF07995 Glucose / Sorbosone dehydrogenase ABEKA_0783 PF00579 tRNA synthetases class I (W and Y) ABEKA_0784 PF03702 Anhydro-N-acetylmuramic acid kinase ABEKA_0785 PF13406 Transglycosylase SLT domain ABEKA_0786 PF02222 ATP-grasp domain ABEKA_0786 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABEKA_0787 PF00731 AIR carboxylase ABEKA_0790 PF02875 Mur ligase family, glutamate ligase domain ABEKA_0790 PF08245 Mur ligase middle domain ABEKA_0790 PF01225 Mur ligase family, catalytic domain ABEKA_0791 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_0791 PF13823 Alcohol dehydrogenase GroES-associated ABEKA_0791 PF00107 Zinc-binding dehydrogenase ABEKA_0795 PF14542 GCN5-related N-acetyl-transferase ABEKA_0796 PF07690 Major Facilitator Superfamily ABEKA_0797 PF03741 Integral membrane protein TerC family ABEKA_0799 PF01979 Amidohydrolase family ABEKA_0800 PF00156 Phosphoribosyl transferase domain ABEKA_0803 PF10411 Disulfide bond isomerase protein N-terminus ABEKA_0803 PF13098 Thioredoxin-like domain ABEKA_0804 PF07690 Major Facilitator Superfamily ABEKA_0805 PF01609 Transposase DDE domain ABEKA_0805 PF13006 Insertion element 4 transposase N-terminal ABEKA_0806 PF13333 Integrase core domain ABEKA_0806 PF00665 Integrase core domain ABEKA_0806 PF13276 HTH-like domain ABEKA_0807 PF01527 Transposase ABEKA_0808 PF13006 Insertion element 4 transposase N-terminal ABEKA_0808 PF01609 Transposase DDE domain ABEKA_0809 PF01926 50S ribosome-binding GTPase ABEKA_0809 PF12631 MnmE helical domain ABEKA_0809 PF10396 GTP-binding protein TrmE N-terminus ABEKA_0810 PF02096 60Kd inner membrane protein ABEKA_0810 PF14849 YidC periplasmic domain ABEKA_0811 PF01809 Putative membrane protein insertion efficiency factor ABEKA_0812 PF00825 Ribonuclease P ABEKA_0813 PF00468 Ribosomal protein L34 ABEKA_0814 PF00308 Bacterial dnaA protein ABEKA_0814 PF11638 DnaA N-terminal domain ABEKA_0814 PF08299 Bacterial dnaA protein helix-turn-helix ABEKA_0815 PF00712 DNA polymerase III beta subunit, N-terminal domain ABEKA_0815 PF02767 DNA polymerase III beta subunit, central domain ABEKA_0815 PF02768 DNA polymerase III beta subunit, C-terminal domain ABEKA_0816 PF02463 RecF/RecN/SMC N terminal domain ABEKA_0817 PF01751 Toprim domain ABEKA_0817 PF18053 DNA gyrase B subunit insert domain ABEKA_0817 PF00204 DNA gyrase B ABEKA_0817 PF00986 DNA gyrase B subunit, carboxyl terminus ABEKA_0817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0819 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_0819 PF13823 Alcohol dehydrogenase GroES-associated ABEKA_0819 PF00107 Zinc-binding dehydrogenase ABEKA_0820 PF12848 ABC transporter ABEKA_0820 PF00005 ABC transporter ABEKA_0824 PF01521 Iron-sulphur cluster biosynthesis ABEKA_0827 PF00905 Penicillin binding protein transpeptidase domain ABEKA_0828 PF00012 Hsp70 protein ABEKA_0829 PF01025 GrpE ABEKA_0832 PF07859 alpha/beta hydrolase fold ABEKA_0834 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABEKA_0840 PF07690 Major Facilitator Superfamily ABEKA_0841 PF07690 Major Facilitator Superfamily ABEKA_0843 PF12796 Ankyrin repeats (3 copies) ABEKA_0844 PF01965 DJ-1/PfpI family ABEKA_0846 PF00171 Aldehyde dehydrogenase family ABEKA_0847 PF00209 Sodium:neurotransmitter symporter family ABEKA_0849 PF02535 ZIP Zinc transporter ABEKA_0850 PF01189 16S rRNA methyltransferase RsmB/F ABEKA_0850 PF01029 NusB family ABEKA_0851 PF02911 Formyl transferase, C-terminal domain ABEKA_0851 PF00551 Formyl transferase ABEKA_0852 PF00920 Dehydratase family ABEKA_0853 PF07282 Putative transposase DNA-binding domain ABEKA_0853 PF12323 Helix-turn-helix domain ABEKA_0853 PF01385 Probable transposase ABEKA_0854 PF00920 Dehydratase family ABEKA_0855 PF07282 Putative transposase DNA-binding domain ABEKA_0855 PF01385 Probable transposase ABEKA_0855 PF12323 Helix-turn-helix domain ABEKA_0860 PF00860 Permease family ABEKA_0861 PF00311 Phosphoenolpyruvate carboxylase ABEKA_0862 PF00440 Bacterial regulatory proteins, tetR family ABEKA_0863 PF00529 HlyD membrane-fusion protein of T1SS ABEKA_0863 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABEKA_0864 PF00873 AcrB/AcrD/AcrF family ABEKA_0866 PF00684 DnaJ central domain ABEKA_0866 PF01556 DnaJ C terminal domain ABEKA_0866 PF00226 DnaJ domain ABEKA_0867 PF00313 'Cold-shock' DNA-binding domain ABEKA_0870 PF01113 Dihydrodipicolinate reductase, N-terminus ABEKA_0870 PF05173 Dihydrodipicolinate reductase, C-terminus ABEKA_0872 PF00107 Zinc-binding dehydrogenase ABEKA_0872 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_0873 PF03352 Methyladenine glycosylase ABEKA_0875 PF01551 Peptidase family M23 ABEKA_0876 PF14815 NUDIX domain ABEKA_0876 PF00730 HhH-GPD superfamily base excision DNA repair protein ABEKA_0876 PF00633 Helix-hairpin-helix motif ABEKA_0879 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABEKA_0879 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_0880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_0880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABEKA_0881 PF14052 Capsule assembly protein Wzi ABEKA_0882 PF02706 Chain length determinant protein ABEKA_0882 PF13807 G-rich domain on putative tyrosine kinase ABEKA_0882 PF13614 AAA domain ABEKA_0883 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABEKA_0884 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ABEKA_0884 PF10531 SLBB domain ABEKA_0884 PF02563 Polysaccharide biosynthesis/export protein ABEKA_0885 PF16363 GDP-mannose 4,6 dehydratase ABEKA_0886 PF00483 Nucleotidyl transferase ABEKA_0887 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABEKA_0888 PF01370 NAD dependent epimerase/dehydratase family ABEKA_0888 PF02222 ATP-grasp domain ABEKA_0892 PF00535 Glycosyl transferase family 2 ABEKA_0894 PF00534 Glycosyl transferases group 1 ABEKA_0894 PF13439 Glycosyltransferase Family 4 ABEKA_0895 PF00534 Glycosyl transferases group 1 ABEKA_0895 PF13439 Glycosyltransferase Family 4 ABEKA_0896 PF01370 NAD dependent epimerase/dehydratase family ABEKA_0897 PF00953 Glycosyl transferase family 4 ABEKA_0899 PF02719 Polysaccharide biosynthesis protein ABEKA_0900 PF00483 Nucleotidyl transferase ABEKA_0901 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABEKA_0901 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABEKA_0901 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABEKA_0902 PF00342 Phosphoglucose isomerase ABEKA_0903 PF16363 GDP-mannose 4,6 dehydratase ABEKA_0904 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABEKA_0904 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABEKA_0904 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABEKA_0904 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABEKA_0906 PF06527 TniQ ABEKA_0906 PF15978 Tn7-like transposition protein D ABEKA_0907 PF13401 AAA domain ABEKA_0907 PF11426 Tn7 transposition regulator TnsC ABEKA_0908 PF00665 Integrase core domain ABEKA_0913 PF01380 SIS domain ABEKA_0914 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_0914 PF14602 Hexapeptide repeat of succinyl-transferase ABEKA_0914 PF12804 MobA-like NTP transferase domain ABEKA_0915 PF04608 Phosphatidylglycerophosphatase A ABEKA_0916 PF00586 AIR synthase related protein, N-terminal domain ABEKA_0916 PF02769 AIR synthase related protein, C-terminal domain ABEKA_0917 PF01029 NusB family ABEKA_0918 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABEKA_0919 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABEKA_0919 PF00925 GTP cyclohydrolase II ABEKA_0920 PF00171 Aldehyde dehydrogenase family ABEKA_0922 PF03949 Malic enzyme, NAD binding domain ABEKA_0922 PF00390 Malic enzyme, N-terminal domain ABEKA_0925 PF01722 BolA-like protein ABEKA_0927 PF13614 AAA domain ABEKA_0930 PF09335 SNARE associated Golgi protein ABEKA_0931 PF02540 NAD synthase ABEKA_0931 PF00958 GMP synthase C terminal domain ABEKA_0931 PF00117 Glutamine amidotransferase class-I ABEKA_0932 PF14338 Mrr N-terminal domain ABEKA_0932 PF04471 Restriction endonuclease ABEKA_0933 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_0933 PF07694 5TMR of 5TMR-LYT ABEKA_0934 PF17158 Membrane-associated sensor, integral membrane domain ABEKA_0934 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_0936 PF05726 Pirin C-terminal cupin domain ABEKA_0936 PF02678 Pirin ABEKA_0937 PF02798 Glutathione S-transferase, N-terminal domain ABEKA_0937 PF00043 Glutathione S-transferase, C-terminal domain ABEKA_0938 PF11808 Phosphate regulon sensor protein PhoR ABEKA_0938 PF00989 PAS fold ABEKA_0938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_0938 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_0939 PF00486 Transcriptional regulatory protein, C terminal ABEKA_0939 PF00072 Response regulator receiver domain ABEKA_0941 PF00106 short chain dehydrogenase ABEKA_0942 PF01554 MatE ABEKA_0943 PF00155 Aminotransferase class I and II ABEKA_0944 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) ABEKA_0944 PF04717 Type VI secretion system, phage-baseplate injector ABEKA_0944 PF13296 Putative type VI secretion system Rhs element Vgr ABEKA_0949 PF13359 DDE superfamily endonuclease ABEKA_0949 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_0950 PF13359 DDE superfamily endonuclease ABEKA_0950 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_0953 PF04261 Dyp-type peroxidase family ABEKA_0954 PF01810 LysE type translocator ABEKA_0955 PF00950 ABC 3 transport family ABEKA_0956 PF00005 ABC transporter ABEKA_0960 PF00119 ATP synthase A chain ABEKA_0961 PF00137 ATP synthase subunit C ABEKA_0962 PF00430 ATP synthase B/B' CF(0) ABEKA_0963 PF00213 ATP synthase delta (OSCP) subunit ABEKA_0964 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABEKA_0964 PF00306 ATP synthase alpha/beta chain, C terminal domain ABEKA_0964 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABEKA_0965 PF00231 ATP synthase ABEKA_0966 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABEKA_0966 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABEKA_0967 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABEKA_0969 PF00171 Aldehyde dehydrogenase family ABEKA_0970 PF02678 Pirin ABEKA_0970 PF05726 Pirin C-terminal cupin domain ABEKA_0972 PF00255 Glutathione peroxidase ABEKA_0973 PF00892 EamA-like transporter family ABEKA_0974 PF01300 Telomere recombination ABEKA_0975 PF02481 DNA recombination-mediator protein A ABEKA_0975 PF17782 DprA winged helix domain ABEKA_0977 PF01327 Polypeptide deformylase ABEKA_0985 PF07690 Major Facilitator Superfamily ABEKA_0986 PF08497 Radical SAM N-terminal ABEKA_0986 PF11842 Domain of unknown function (DUF3362) ABEKA_0986 PF04055 Radical SAM superfamily ABEKA_0989 PF07690 Major Facilitator Superfamily ABEKA_0989 PF00083 Sugar (and other) transporter ABEKA_0990 PF00817 impB/mucB/samB family ABEKA_0990 PF11799 impB/mucB/samB family C-terminal domain ABEKA_0990 PF11798 IMS family HHH motif ABEKA_0994 PF07690 Major Facilitator Superfamily ABEKA_0997 PF03641 Possible lysine decarboxylase ABEKA_0998 PF03471 Transporter associated domain ABEKA_0998 PF03741 Integral membrane protein TerC family ABEKA_0999 PF02810 SEC-C motif ABEKA_1000 PF03458 UPF0126 domain ABEKA_1001 PF07690 Major Facilitator Superfamily ABEKA_1002 PF03989 DNA gyrase C-terminal domain, beta-propeller ABEKA_1002 PF00521 DNA gyrase/topoisomerase IV, subunit A ABEKA_1003 PF00501 AMP-binding enzyme ABEKA_1003 PF13193 AMP-binding enzyme C-terminal domain ABEKA_1006 PF00719 Inorganic pyrophosphatase ABEKA_1009 PF01078 Magnesium chelatase, subunit ChlI ABEKA_1009 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABEKA_1019 PF03050 Transposase IS66 family ABEKA_1019 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_1019 PF13817 IS66 C-terminal element ABEKA_1019 PF13007 Transposase C of IS166 homeodomain ABEKA_1020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ABEKA_1020 PF01348 Type II intron maturase ABEKA_1022 PF03050 Transposase IS66 family ABEKA_1022 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_1022 PF13007 Transposase C of IS166 homeodomain ABEKA_1022 PF13817 IS66 C-terminal element ABEKA_1023 PF13358 DDE superfamily endonuclease ABEKA_1032 PF00534 Glycosyl transferases group 1 ABEKA_1032 PF13439 Glycosyltransferase Family 4 ABEKA_1037 PF01078 Magnesium chelatase, subunit ChlI ABEKA_1037 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABEKA_1039 PF00543 Nitrogen regulatory protein P-II ABEKA_1040 PF00909 Ammonium Transporter Family ABEKA_1041 PF03477 ATP cone domain ABEKA_1042 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABEKA_1042 PF01872 RibD C-terminal domain ABEKA_1044 PF00677 Lumazine binding domain ABEKA_1045 PF09335 SNARE associated Golgi protein ABEKA_1048 PF02789 Cytosol aminopeptidase family, N-terminal domain ABEKA_1048 PF00883 Cytosol aminopeptidase family, catalytic domain ABEKA_1049 PF03739 Lipopolysaccharide export system permease LptF/LptG ABEKA_1050 PF03739 Lipopolysaccharide export system permease LptF/LptG ABEKA_1051 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABEKA_1051 PF01676 Metalloenzyme superfamily ABEKA_1052 PF17820 PDZ domain ABEKA_1052 PF03572 Peptidase family S41 ABEKA_1052 PF01471 Putative peptidoglycan binding domain ABEKA_1053 PF00158 Sigma-54 interaction domain ABEKA_1053 PF02954 Bacterial regulatory protein, Fis family ABEKA_1053 PF00072 Response regulator receiver domain ABEKA_1054 PF13493 Domain of unknown function (DUF4118) ABEKA_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_1054 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_1054 PF00989 PAS fold ABEKA_1054 PF08447 PAS fold ABEKA_1054 PF13426 PAS domain ABEKA_1059 PF00196 Bacterial regulatory proteins, luxR family ABEKA_1059 PF00072 Response regulator receiver domain ABEKA_1060 PF00768 D-alanyl-D-alanine carboxypeptidase ABEKA_1061 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_1062 PF00742 Homoserine dehydrogenase ABEKA_1062 PF01842 ACT domain ABEKA_1062 PF03447 Homoserine dehydrogenase, NAD binding domain ABEKA_1063 PF10411 Disulfide bond isomerase protein N-terminus ABEKA_1063 PF13098 Thioredoxin-like domain ABEKA_1064 PF02899 Phage integrase, N-terminal SAM-like domain ABEKA_1064 PF00589 Phage integrase family ABEKA_1066 PF07670 Nucleoside recognition ABEKA_1066 PF07664 Ferrous iron transport protein B C terminus ABEKA_1066 PF02421 Ferrous iron transport protein B ABEKA_1068 PF08245 Mur ligase middle domain ABEKA_1068 PF02875 Mur ligase family, glutamate ligase domain ABEKA_1069 PF01098 Cell cycle protein ABEKA_1071 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABEKA_1072 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABEKA_1073 PF00149 Calcineurin-like phosphoesterase ABEKA_1074 PF00293 NUDIX domain ABEKA_1075 PF13667 ThiC-associated domain ABEKA_1075 PF01964 Radical SAM ThiC family ABEKA_1078 PF02321 Outer membrane efflux protein ABEKA_1079 PF01895 PhoU domain ABEKA_1080 PF00005 ABC transporter ABEKA_1080 PF00664 ABC transporter transmembrane region ABEKA_1082 PF03652 Holliday junction resolvase ABEKA_1083 PF02622 Uncharacterized ACR, COG1678 ABEKA_1086 PF13737 Transposase DDE domain ABEKA_1092 PF02463 RecF/RecN/SMC N terminal domain ABEKA_1094 PF06865 Pyrimidine/purine nucleoside phosphorylase ABEKA_1095 PF00588 SpoU rRNA Methylase family ABEKA_1095 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABEKA_1097 PF01121 Dephospho-CoA kinase ABEKA_1098 PF01478 Type IV leader peptidase family ABEKA_1098 PF06750 Bacterial Peptidase A24 N-terminal domain ABEKA_1099 PF00482 Type II secretion system (T2SS), protein F ABEKA_1100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ABEKA_1100 PF00437 Type II/IV secretion system protein ABEKA_1101 PF00121 Triosephosphate isomerase ABEKA_1102 PF03840 Preprotein translocase SecG subunit ABEKA_1108 PF17384 RimP C-terminal SH3 domain ABEKA_1108 PF02576 RimP N-terminal domain ABEKA_1109 PF08529 NusA N-terminal domain ABEKA_1109 PF00575 S1 RNA binding domain ABEKA_1109 PF13184 NusA-like KH domain ABEKA_1110 PF11987 Translation-initiation factor 2 ABEKA_1110 PF00009 Elongation factor Tu GTP binding domain ABEKA_1110 PF04760 Translation initiation factor IF-2, N-terminal region ABEKA_1110 PF08364 Bacterial translation initiation factor IF-2 associated region ABEKA_1111 PF02033 Ribosome-binding factor A ABEKA_1112 PF01609 Transposase DDE domain ABEKA_1112 PF13006 Insertion element 4 transposase N-terminal ABEKA_1113 PF13006 Insertion element 4 transposase N-terminal ABEKA_1113 PF01609 Transposase DDE domain ABEKA_1114 PF03334 Na+/H+ antiporter subunit ABEKA_1115 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABEKA_1116 PF01899 Na+/H+ ion antiporter subunit ABEKA_1117 PF00361 Proton-conducting membrane transporter ABEKA_1118 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABEKA_1119 PF00361 Proton-conducting membrane transporter ABEKA_1119 PF13244 Domain of unknown function (DUF4040) ABEKA_1119 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABEKA_1119 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABEKA_1122 PF01502 Phosphoribosyl-AMP cyclohydrolase ABEKA_1123 PF00106 short chain dehydrogenase ABEKA_1124 PF01053 Cys/Met metabolism PLP-dependent enzyme ABEKA_1125 PF00005 ABC transporter ABEKA_1125 PF12848 ABC transporter ABEKA_1129 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABEKA_1133 PF01795 MraW methylase family ABEKA_1135 PF03717 Penicillin-binding Protein dimerisation domain ABEKA_1135 PF00905 Penicillin binding protein transpeptidase domain ABEKA_1136 PF02875 Mur ligase family, glutamate ligase domain ABEKA_1136 PF01225 Mur ligase family, catalytic domain ABEKA_1136 PF08245 Mur ligase middle domain ABEKA_1137 PF01225 Mur ligase family, catalytic domain ABEKA_1137 PF02875 Mur ligase family, glutamate ligase domain ABEKA_1137 PF08245 Mur ligase middle domain ABEKA_1138 PF00953 Glycosyl transferase family 4 ABEKA_1139 PF13847 Methyltransferase domain ABEKA_1140 PF17092 Penicillin-binding protein OB-like domain ABEKA_1140 PF00905 Penicillin binding protein transpeptidase domain ABEKA_1140 PF00912 Transglycosylase ABEKA_1141 PF11104 Type IV pilus assembly protein PilM; ABEKA_1148 PF03958 Bacterial type II/III secretion system short domain ABEKA_1148 PF07660 Secretin and TonB N terminus short domain ABEKA_1148 PF11741 AMIN domain ABEKA_1148 PF00263 Bacterial type II and III secretion system protein ABEKA_1149 PF01202 Shikimate kinase ABEKA_1150 PF01761 3-dehydroquinate synthase ABEKA_1151 PF13737 Transposase DDE domain ABEKA_1152 PF04932 O-Antigen ligase ABEKA_1152 PF15864 Protein glycosylation ligase ABEKA_1152 PF11846 Virulence factor membrane-bound polymerase, C-terminal ABEKA_1153 PF00210 Ferritin-like domain ABEKA_1155 PF04324 BFD-like [2Fe-2S] binding domain ABEKA_1156 PF01042 Endoribonuclease L-PSP ABEKA_1157 PF04607 Region found in RelA / SpoT proteins ABEKA_1157 PF02824 TGS domain ABEKA_1157 PF13291 ACT domain ABEKA_1158 PF01192 RNA polymerase Rpb6 ABEKA_1159 PF00625 Guanylate kinase ABEKA_1160 PF02401 LytB protein ABEKA_1164 PF00886 Ribosomal protein S16 ABEKA_1165 PF05239 PRC-barrel domain ABEKA_1165 PF01782 RimM N-terminal domain ABEKA_1166 PF01746 tRNA (Guanine-1)-methyltransferase ABEKA_1167 PF01245 Ribosomal protein L19 ABEKA_1168 PF00561 alpha/beta hydrolase fold ABEKA_1169 PF00561 alpha/beta hydrolase fold ABEKA_1170 PF00561 alpha/beta hydrolase fold ABEKA_1171 PF00561 alpha/beta hydrolase fold ABEKA_1172 PF03280 Proteobacterial lipase chaperone protein ABEKA_1173 PF09157 Pseudouridine synthase II TruB, C-terminal ABEKA_1173 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABEKA_1173 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABEKA_1176 PF01385 Probable transposase ABEKA_1176 PF12323 Helix-turn-helix domain ABEKA_1176 PF07282 Putative transposase DNA-binding domain ABEKA_1177 PF01925 Sulfite exporter TauE/SafE ABEKA_1179 PF00892 EamA-like transporter family ABEKA_1182 PF00892 EamA-like transporter family ABEKA_1183 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABEKA_1183 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABEKA_1185 PF02913 FAD linked oxidases, C-terminal domain ABEKA_1185 PF01565 FAD binding domain ABEKA_1187 PF07690 Major Facilitator Superfamily ABEKA_1189 PF12823 Domain of unknown function (DUF3817) ABEKA_1190 PF12805 FUSC-like inner membrane protein yccS ABEKA_1191 PF00080 Copper/zinc superoxide dismutase (SODC) ABEKA_1192 PF01594 AI-2E family transporter ABEKA_1193 PF13614 AAA domain ABEKA_1196 PF08241 Methyltransferase domain ABEKA_1199 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABEKA_1200 PF01197 Ribosomal protein L31 ABEKA_1201 PF03109 ABC1 family ABEKA_1203 PF01554 MatE ABEKA_1205 PF04055 Radical SAM superfamily ABEKA_1205 PF06969 HemN C-terminal domain ABEKA_1207 PF00313 'Cold-shock' DNA-binding domain ABEKA_1208 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_1208 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_1208 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_1208 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_1211 PF01488 Shikimate / quinate 5-dehydrogenase ABEKA_1211 PF08501 Shikimate dehydrogenase substrate binding domain ABEKA_1211 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABEKA_1213 PF01218 Coproporphyrinogen III oxidase ABEKA_1214 PF04055 Radical SAM superfamily ABEKA_1214 PF06969 HemN C-terminal domain ABEKA_1215 PF00925 GTP cyclohydrolase II ABEKA_1216 PF02779 Transketolase, pyrimidine binding domain ABEKA_1216 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABEKA_1216 PF02780 Transketolase, C-terminal domain ABEKA_1217 PF00459 Inositol monophosphatase family ABEKA_1218 PF00270 DEAD/DEAH box helicase ABEKA_1218 PF00271 Helicase conserved C-terminal domain ABEKA_1219 PF00005 ABC transporter ABEKA_1220 PF02405 Permease MlaE ABEKA_1221 PF02470 MlaD protein ABEKA_1225 PF01544 CorA-like Mg2+ transporter protein ABEKA_1226 PF03641 Possible lysine decarboxylase ABEKA_1227 PF00293 NUDIX domain ABEKA_1228 PF00156 Phosphoribosyl transferase domain ABEKA_1229 PF00270 DEAD/DEAH box helicase ABEKA_1229 PF00271 Helicase conserved C-terminal domain ABEKA_1229 PF17191 RecG wedge domain ABEKA_1231 PF01553 Acyltransferase ABEKA_1233 PF00375 Sodium:dicarboxylate symporter family ABEKA_1234 PF01926 50S ribosome-binding GTPase ABEKA_1235 PF02082 Transcriptional regulator ABEKA_1236 PF00970 Oxidoreductase FAD-binding domain ABEKA_1236 PF00042 Globin ABEKA_1236 PF00175 Oxidoreductase NAD-binding domain ABEKA_1237 PF05872 Bacterial protein of unknown function (DUF853) ABEKA_1238 PF01053 Cys/Met metabolism PLP-dependent enzyme ABEKA_1239 PF00117 Glutamine amidotransferase class-I ABEKA_1240 PF00338 Ribosomal protein S10p/S20e ABEKA_1241 PF00297 Ribosomal protein L3 ABEKA_1242 PF00573 Ribosomal protein L4/L1 family ABEKA_1243 PF00276 Ribosomal protein L23 ABEKA_1244 PF00181 Ribosomal Proteins L2, RNA binding domain ABEKA_1244 PF03947 Ribosomal Proteins L2, C-terminal domain ABEKA_1245 PF00203 Ribosomal protein S19 ABEKA_1246 PF00237 Ribosomal protein L22p/L17e ABEKA_1247 PF07650 KH domain ABEKA_1247 PF00189 Ribosomal protein S3, C-terminal domain ABEKA_1248 PF00252 Ribosomal protein L16p/L10e ABEKA_1249 PF00831 Ribosomal L29 protein ABEKA_1250 PF00366 Ribosomal protein S17 ABEKA_1251 PF00238 Ribosomal protein L14p/L23e ABEKA_1252 PF00467 KOW motif ABEKA_1252 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABEKA_1253 PF00281 Ribosomal protein L5 ABEKA_1253 PF00673 ribosomal L5P family C-terminus ABEKA_1254 PF00253 Ribosomal protein S14p/S29e ABEKA_1255 PF00410 Ribosomal protein S8 ABEKA_1256 PF00347 Ribosomal protein L6 ABEKA_1257 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABEKA_1258 PF03719 Ribosomal protein S5, C-terminal domain ABEKA_1258 PF00333 Ribosomal protein S5, N-terminal domain ABEKA_1259 PF00327 Ribosomal protein L30p/L7e ABEKA_1260 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABEKA_1261 PF00344 SecY translocase ABEKA_1262 PF00444 Ribosomal protein L36 ABEKA_1263 PF00416 Ribosomal protein S13/S18 ABEKA_1264 PF00411 Ribosomal protein S11 ABEKA_1265 PF00163 Ribosomal protein S4/S9 N-terminal domain ABEKA_1265 PF01479 S4 domain ABEKA_1266 PF01000 RNA polymerase Rpb3/RpoA insert domain ABEKA_1266 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABEKA_1266 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABEKA_1267 PF01196 Ribosomal protein L17 ABEKA_1268 PF00743 Flavin-binding monooxygenase-like ABEKA_1269 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_1269 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_1269 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_1270 PF03937 Flavinator of succinate dehydrogenase ABEKA_1278 PF00892 EamA-like transporter family ABEKA_1280 PF09526 Probable metal-binding protein (DUF2387) ABEKA_1281 PF01432 Peptidase family M3 ABEKA_1283 PF00773 RNB domain ABEKA_1283 PF08206 Ribonuclease B OB domain ABEKA_1283 PF00575 S1 RNA binding domain ABEKA_1283 PF17876 Cold shock domain ABEKA_1283 PF08461 Ribonuclease R winged-helix domain ABEKA_1291 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABEKA_1295 PF00892 EamA-like transporter family ABEKA_1296 PF03631 Virulence factor BrkB ABEKA_1297 PF03358 NADPH-dependent FMN reductase ABEKA_1299 PF13359 DDE superfamily endonuclease ABEKA_1299 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1312 PF02130 Uncharacterized protein family UPF0054 ABEKA_1313 PF02562 PhoH-like protein ABEKA_1314 PF04055 Radical SAM superfamily ABEKA_1314 PF01938 TRAM domain ABEKA_1314 PF00919 Uncharacterized protein family UPF0004 ABEKA_1315 PF01551 Peptidase family M23 ABEKA_1315 PF10145 Phage-related minor tail protein ABEKA_1315 PF01464 Transglycosylase SLT domain ABEKA_1317 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABEKA_1317 PF00056 lactate/malate dehydrogenase, NAD binding domain ABEKA_1323 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ABEKA_1324 PF01066 CDP-alcohol phosphatidyltransferase ABEKA_1331 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_1331 PF00403 Heavy-metal-associated domain ABEKA_1331 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABEKA_1334 PF04273 Putative phosphatase (DUF442) ABEKA_1334 PF00753 Metallo-beta-lactamase superfamily ABEKA_1336 PF00085 Thioredoxin ABEKA_1337 PF03061 Thioesterase superfamily ABEKA_1339 PF04461 Protein of unknown function (DUF520) ABEKA_1342 PF01266 FAD dependent oxidoreductase ABEKA_1342 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABEKA_1344 PF03795 YCII-related domain ABEKA_1345 PF04279 Intracellular septation protein A ABEKA_1346 PF02811 PHP domain ABEKA_1347 PF01062 Bestrophin, RFP-TM, chloride channel ABEKA_1348 PF04002 RadC-like JAB domain ABEKA_1349 PF04127 DNA / pantothenate metabolism flavoprotein ABEKA_1349 PF02441 Flavoprotein ABEKA_1352 PF01207 Dihydrouridine synthase (Dus) ABEKA_1354 PF07690 Major Facilitator Superfamily ABEKA_1356 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABEKA_1356 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABEKA_1357 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ABEKA_1358 PF02233 NAD(P) transhydrogenase beta subunit ABEKA_1360 PF01261 Xylose isomerase-like TIM barrel ABEKA_1361 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABEKA_1361 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABEKA_1362 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_1363 PF01627 Hpt domain ABEKA_1363 PF00072 Response regulator receiver domain ABEKA_1363 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABEKA_1363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_1363 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_1363 PF00672 HAMP domain ABEKA_1365 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_1367 PF05958 tRNA (Uracil-5-)-methyltransferase ABEKA_1368 PF13291 ACT domain ABEKA_1368 PF04607 Region found in RelA / SpoT proteins ABEKA_1368 PF02824 TGS domain ABEKA_1370 PF07549 SecD/SecF GG Motif ABEKA_1370 PF02355 Protein export membrane protein ABEKA_1371 PF13721 SecD export protein N-terminal TM region ABEKA_1371 PF02355 Protein export membrane protein ABEKA_1371 PF07549 SecD/SecF GG Motif ABEKA_1372 PF02699 Preprotein translocase subunit ABEKA_1373 PF01702 Queuine tRNA-ribosyltransferase ABEKA_1375 PF04011 LemA family ABEKA_1377 PF02547 Queuosine biosynthesis protein ABEKA_1380 PF03971 Monomeric isocitrate dehydrogenase ABEKA_1385 PF12833 Helix-turn-helix domain ABEKA_1385 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABEKA_1387 PF00290 Tryptophan synthase alpha chain ABEKA_1388 PF01039 Carboxyl transferase domain ABEKA_1389 PF02875 Mur ligase family, glutamate ligase domain ABEKA_1389 PF08245 Mur ligase middle domain ABEKA_1392 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABEKA_1392 PF00578 AhpC/TSA family ABEKA_1393 PF07516 SecA Wing and Scaffold domain ABEKA_1393 PF02810 SEC-C motif ABEKA_1393 PF07517 SecA DEAD-like domain ABEKA_1393 PF01043 SecA preprotein cross-linking domain ABEKA_1395 PF01960 ArgJ family ABEKA_1396 PF02445 Quinolinate synthetase A protein ABEKA_1408 PF04386 Stringent starvation protein B ABEKA_1409 PF02798 Glutathione S-transferase, N-terminal domain ABEKA_1409 PF00043 Glutathione S-transferase, C-terminal domain ABEKA_1411 PF00380 Ribosomal protein S9/S16 ABEKA_1412 PF00572 Ribosomal protein L13 ABEKA_1413 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABEKA_1414 PF00398 Ribosomal RNA adenine dimethylase ABEKA_1415 PF00149 Calcineurin-like phosphoesterase ABEKA_1418 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_1423 PF16360 GTP-binding GTPase Middle Region ABEKA_1423 PF13167 GTP-binding GTPase N-terminal ABEKA_1423 PF01926 50S ribosome-binding GTPase ABEKA_1426 PF01609 Transposase DDE domain ABEKA_1426 PF13006 Insertion element 4 transposase N-terminal ABEKA_1427 PF13091 PLD-like domain ABEKA_1428 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABEKA_1428 PF00149 Calcineurin-like phosphoesterase ABEKA_1430 PF00083 Sugar (and other) transporter ABEKA_1430 PF07690 Major Facilitator Superfamily ABEKA_1431 PF03006 Haemolysin-III related ABEKA_1436 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABEKA_1436 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABEKA_1436 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_1437 PF02803 Thiolase, C-terminal domain ABEKA_1437 PF00108 Thiolase, N-terminal domain ABEKA_1438 PF02311 AraC-like ligand binding domain ABEKA_1438 PF12833 Helix-turn-helix domain ABEKA_1439 PF02515 CoA-transferase family III ABEKA_1440 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_1441 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABEKA_1441 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABEKA_1443 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1443 PF13359 DDE superfamily endonuclease ABEKA_1444 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1444 PF13359 DDE superfamily endonuclease ABEKA_1448 PF02803 Thiolase, C-terminal domain ABEKA_1448 PF00108 Thiolase, N-terminal domain ABEKA_1449 PF00114 Pilin (bacterial filament) ABEKA_1449 PF07963 Prokaryotic N-terminal methylation motif ABEKA_1450 PF13505 Outer membrane protein beta-barrel domain ABEKA_1450 PF00691 OmpA family ABEKA_1452 PF00324 Amino acid permease ABEKA_1453 PF05175 Methyltransferase small domain ABEKA_1453 PF08468 Methyltransferase small domain N-terminal ABEKA_1454 PF00860 Permease family ABEKA_1455 PF00009 Elongation factor Tu GTP binding domain ABEKA_1455 PF00679 Elongation factor G C-terminus ABEKA_1455 PF03144 Elongation factor Tu domain 2 ABEKA_1456 PF01741 Large-conductance mechanosensitive channel, MscL ABEKA_1457 PF00639 PPIC-type PPIASE domain ABEKA_1457 PF09312 SurA N-terminal domain ABEKA_1458 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABEKA_1458 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABEKA_1458 PF06827 Zinc finger found in FPG and IleRS ABEKA_1459 PF04966 Carbohydrate-selective porin, OprB family ABEKA_1460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_1464 PF01571 Aminomethyltransferase folate-binding domain ABEKA_1465 PF00394 Multicopper oxidase ABEKA_1465 PF07732 Multicopper oxidase ABEKA_1465 PF07731 Multicopper oxidase ABEKA_1466 PF00694 Aconitase C-terminal domain ABEKA_1466 PF00330 Aconitase family (aconitate hydratase) ABEKA_1474 PF00849 RNA pseudouridylate synthase ABEKA_1478 PF03831 PhnA domain ABEKA_1478 PF08274 PhnA Zinc-Ribbon ABEKA_1482 PF01594 AI-2E family transporter ABEKA_1485 PF08543 Phosphomethylpyrimidine kinase ABEKA_1485 PF02581 Thiamine monophosphate synthase ABEKA_1485 PF03070 TENA/THI-4/PQQC family ABEKA_1486 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_1488 PF05656 Protein of unknown function (DUF805) ABEKA_1489 PF04966 Carbohydrate-selective porin, OprB family ABEKA_1490 PF01011 PQQ enzyme repeat ABEKA_1491 PF07715 TonB-dependent Receptor Plug Domain ABEKA_1491 PF00593 TonB dependent receptor ABEKA_1492 PF13737 Transposase DDE domain ABEKA_1494 PF06276 Ferric iron reductase FhuF-like transporter ABEKA_1494 PF04183 IucA / IucC family ABEKA_1495 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABEKA_1496 PF06276 Ferric iron reductase FhuF-like transporter ABEKA_1496 PF04183 IucA / IucC family ABEKA_1499 PF07690 Major Facilitator Superfamily ABEKA_1500 PF00593 TonB dependent receptor ABEKA_1500 PF07715 TonB-dependent Receptor Plug Domain ABEKA_1502 PF01527 Transposase ABEKA_1503 PF00665 Integrase core domain ABEKA_1503 PF13276 HTH-like domain ABEKA_1504 PF13737 Transposase DDE domain ABEKA_1505 PF00665 Integrase core domain ABEKA_1505 PF13333 Integrase core domain ABEKA_1505 PF13276 HTH-like domain ABEKA_1507 PF01381 Helix-turn-helix ABEKA_1512 PF00268 Ribonucleotide reductase, small chain ABEKA_1516 PF01527 Transposase ABEKA_1517 PF00665 Integrase core domain ABEKA_1517 PF13276 HTH-like domain ABEKA_1517 PF13333 Integrase core domain ABEKA_1525 PF03050 Transposase IS66 family ABEKA_1525 PF13007 Transposase C of IS166 homeodomain ABEKA_1525 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_1525 PF13817 IS66 C-terminal element ABEKA_1526 PF13007 Transposase C of IS166 homeodomain ABEKA_1526 PF13817 IS66 C-terminal element ABEKA_1526 PF03050 Transposase IS66 family ABEKA_1526 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_1540 PF08463 EcoEI R protein C-terminal ABEKA_1540 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABEKA_1540 PF04851 Type III restriction enzyme, res subunit ABEKA_1540 PF00271 Helicase conserved C-terminal domain ABEKA_1548 PF03477 ATP cone domain ABEKA_1548 PF02867 Ribonucleotide reductase, barrel domain ABEKA_1548 PF00317 Ribonucleotide reductase, all-alpha domain ABEKA_1549 PF00072 Response regulator receiver domain ABEKA_1549 PF00486 Transcriptional regulatory protein, C terminal ABEKA_1550 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_1550 PF00672 HAMP domain ABEKA_1550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_1552 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABEKA_1553 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABEKA_1554 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABEKA_1554 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABEKA_1556 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABEKA_1556 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABEKA_1556 PF10531 SLBB domain ABEKA_1557 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABEKA_1557 PF00384 Molybdopterin oxidoreductase ABEKA_1557 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABEKA_1558 PF00146 NADH dehydrogenase ABEKA_1559 PF12838 4Fe-4S dicluster domain ABEKA_1560 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABEKA_1561 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABEKA_1562 PF00361 Proton-conducting membrane transporter ABEKA_1562 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABEKA_1563 PF00361 Proton-conducting membrane transporter ABEKA_1564 PF00361 Proton-conducting membrane transporter ABEKA_1570 PF00313 'Cold-shock' DNA-binding domain ABEKA_1571 PF03466 LysR substrate binding domain ABEKA_1571 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_1572 PF00175 Oxidoreductase NAD-binding domain ABEKA_1572 PF00970 Oxidoreductase FAD-binding domain ABEKA_1573 PF01609 Transposase DDE domain ABEKA_1573 PF13006 Insertion element 4 transposase N-terminal ABEKA_1575 PF13520 Amino acid permease ABEKA_1576 PF06751 Ethanolamine ammonia lyase large subunit (EutB) ABEKA_1577 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ABEKA_1579 PF05552 Conserved TM helix ABEKA_1584 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_1587 PF00909 Ammonium Transporter Family ABEKA_1588 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABEKA_1588 PF00753 Metallo-beta-lactamase superfamily ABEKA_1591 PF09334 tRNA synthetases class I (M) ABEKA_1591 PF01588 Putative tRNA binding domain ABEKA_1593 PF13359 DDE superfamily endonuclease ABEKA_1593 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1594 PF13359 DDE superfamily endonuclease ABEKA_1594 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1595 PF10609 NUBPL iron-transfer P-loop NTPase ABEKA_1597 PF00692 dUTPase ABEKA_1600 PF13737 Transposase DDE domain ABEKA_1608 PF03129 Anticodon binding domain ABEKA_1608 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABEKA_1608 PF04073 Aminoacyl-tRNA editing domain ABEKA_1609 PF00873 AcrB/AcrD/AcrF family ABEKA_1610 PF13533 Biotin-lipoyl like ABEKA_1612 PF00072 Response regulator receiver domain ABEKA_1613 PF00072 Response regulator receiver domain ABEKA_1614 PF01584 CheW-like domain ABEKA_1617 PF01584 CheW-like domain ABEKA_1617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_1617 PF01627 Hpt domain ABEKA_1617 PF00072 Response regulator receiver domain ABEKA_1619 PF01546 Peptidase family M20/M25/M40 ABEKA_1619 PF07687 Peptidase dimerisation domain ABEKA_1622 PF04304 Protein of unknown function (DUF454) ABEKA_1634 PF00175 Oxidoreductase NAD-binding domain ABEKA_1634 PF00258 Flavodoxin ABEKA_1634 PF00667 FAD binding domain ABEKA_1636 PF12805 FUSC-like inner membrane protein yccS ABEKA_1637 PF07690 Major Facilitator Superfamily ABEKA_1639 PF00881 Nitroreductase family ABEKA_1641 PF03616 Sodium/glutamate symporter ABEKA_1642 PF01235 Sodium:alanine symporter family ABEKA_1643 PF02417 Chromate transporter ABEKA_1645 PF01734 Patatin-like phospholipase ABEKA_1650 PF03061 Thioesterase superfamily ABEKA_1651 PF16859 Tetracyclin repressor-like, C-terminal domain ABEKA_1651 PF00440 Bacterial regulatory proteins, tetR family ABEKA_1652 PF07690 Major Facilitator Superfamily ABEKA_1656 PF01494 FAD binding domain ABEKA_1658 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABEKA_1658 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABEKA_1659 PF07152 YaeQ protein ABEKA_1660 PF02308 MgtC family ABEKA_1661 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_1663 PF01590 GAF domain ABEKA_1663 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_1663 PF00360 Phytochrome region ABEKA_1663 PF00563 EAL domain ABEKA_1669 PF01906 Putative heavy-metal-binding ABEKA_1670 PF01906 Putative heavy-metal-binding ABEKA_1671 PF02321 Outer membrane efflux protein ABEKA_1672 PF00873 AcrB/AcrD/AcrF family ABEKA_1673 PF00529 HlyD membrane-fusion protein of T1SS ABEKA_1673 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABEKA_1674 PF01569 PAP2 superfamily ABEKA_1676 PF00348 Polyprenyl synthetase ABEKA_1677 PF00829 Ribosomal prokaryotic L21 protein ABEKA_1678 PF01016 Ribosomal L27 protein ABEKA_1679 PF03548 Outer membrane lipoprotein carrier protein LolA ABEKA_1681 PF13737 Transposase DDE domain ABEKA_1683 PF02403 Seryl-tRNA synthetase N-terminal domain ABEKA_1683 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABEKA_1684 PF10414 Sirohaem synthase dimerisation region ABEKA_1684 PF14824 Sirohaem biosynthesis protein central ABEKA_1684 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABEKA_1685 PF00588 SpoU rRNA Methylase family ABEKA_1687 PF13520 Amino acid permease ABEKA_1688 PF00465 Iron-containing alcohol dehydrogenase ABEKA_1690 PF03099 Biotin/lipoate A/B protein ligase family ABEKA_1691 PF04359 Protein of unknown function (DUF493) ABEKA_1692 PF04546 Sigma-70, non-essential region ABEKA_1692 PF03979 Sigma-70 factor, region 1.1 ABEKA_1692 PF00140 Sigma-70 factor, region 1.2 ABEKA_1692 PF04542 Sigma-70 region 2 ABEKA_1692 PF04539 Sigma-70 region 3 ABEKA_1692 PF04545 Sigma-70, region 4 ABEKA_1697 PF09335 SNARE associated Golgi protein ABEKA_1700 PF13006 Insertion element 4 transposase N-terminal ABEKA_1700 PF01609 Transposase DDE domain ABEKA_1701 PF17773 UPF0176 acylphosphatase like domain ABEKA_1701 PF00581 Rhodanese-like domain ABEKA_1706 PF02261 Aspartate decarboxylase ABEKA_1707 PF01195 Peptidyl-tRNA hydrolase ABEKA_1708 PF01386 Ribosomal L25p family ABEKA_1709 PF14572 Phosphoribosyl synthetase-associated domain ABEKA_1709 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABEKA_1714 PF08544 GHMP kinases C terminal ABEKA_1714 PF00288 GHMP kinases N terminal domain ABEKA_1715 PF03550 Outer membrane lipoprotein LolB ABEKA_1717 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABEKA_1717 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABEKA_1717 PF01488 Shikimate / quinate 5-dehydrogenase ABEKA_1718 PF01807 CHC2 zinc finger ABEKA_1718 PF08275 DNA primase catalytic core, N-terminal domain ABEKA_1718 PF10410 DnaB-helicase binding domain of primase ABEKA_1718 PF08278 DNA primase DnaG DnaB-binding ABEKA_1719 PF13525 Outer membrane lipoprotein ABEKA_1720 PF00849 RNA pseudouridylate synthase ABEKA_1720 PF01479 S4 domain ABEKA_1721 PF02578 Multi-copper polyphenol oxidoreductase laccase ABEKA_1722 PF03358 NADPH-dependent FMN reductase ABEKA_1723 PF01668 SmpB protein ABEKA_1724 PF01467 Cytidylyltransferase-like ABEKA_1725 PF00037 4Fe-4S binding domain ABEKA_1728 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_1729 PF01042 Endoribonuclease L-PSP ABEKA_1730 PF00440 Bacterial regulatory proteins, tetR family ABEKA_1731 PF01272 Transcription elongation factor, GreA/GreB, C-term ABEKA_1731 PF03449 Transcription elongation factor, N-terminal ABEKA_1732 PF02142 MGS-like domain ABEKA_1732 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABEKA_1732 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABEKA_1733 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABEKA_1733 PF00117 Glutamine amidotransferase class-I ABEKA_1737 PF01985 CRS1 / YhbY (CRM) domain ABEKA_1738 PF01728 FtsJ-like methyltransferase ABEKA_1739 PF01434 Peptidase family M41 ABEKA_1739 PF06480 FtsH Extracellular ABEKA_1739 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_1739 PF17862 AAA+ lid domain ABEKA_1741 PF00809 Pterin binding enzyme ABEKA_1749 PF00571 CBS domain ABEKA_1749 PF03471 Transporter associated domain ABEKA_1749 PF01595 Cyclin M transmembrane N-terminal domain ABEKA_1750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_1750 PF03466 LysR substrate binding domain ABEKA_1751 PF00463 Isocitrate lyase family ABEKA_1752 PF00873 AcrB/AcrD/AcrF family ABEKA_1753 PF00873 AcrB/AcrD/AcrF family ABEKA_1754 PF00571 CBS domain ABEKA_1754 PF01769 Divalent cation transporter ABEKA_1754 PF03448 MgtE intracellular N domain ABEKA_1756 PF01435 Peptidase family M48 ABEKA_1757 PF10145 Phage-related minor tail protein ABEKA_1757 PF01464 Transglycosylase SLT domain ABEKA_1757 PF01551 Peptidase family M23 ABEKA_1758 PF01171 PP-loop family ABEKA_1760 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABEKA_1760 PF01464 Transglycosylase SLT domain ABEKA_1761 PF03449 Transcription elongation factor, N-terminal ABEKA_1761 PF01272 Transcription elongation factor, GreA/GreB, C-term ABEKA_1768 PF13817 IS66 C-terminal element ABEKA_1768 PF13007 Transposase C of IS166 homeodomain ABEKA_1768 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_1768 PF03050 Transposase IS66 family ABEKA_1770 PF13411 MerR HTH family regulatory protein ABEKA_1772 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_1773 PF00561 alpha/beta hydrolase fold ABEKA_1774 PF03435 Saccharopine dehydrogenase NADP binding domain ABEKA_1775 PF00171 Aldehyde dehydrogenase family ABEKA_1777 PF07859 alpha/beta hydrolase fold ABEKA_1778 PF01047 MarR family ABEKA_1779 PF03449 Transcription elongation factor, N-terminal ABEKA_1779 PF01272 Transcription elongation factor, GreA/GreB, C-term ABEKA_1783 PF01272 Transcription elongation factor, GreA/GreB, C-term ABEKA_1783 PF03449 Transcription elongation factor, N-terminal ABEKA_1786 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABEKA_1786 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABEKA_1786 PF11890 Domain of unknown function (DUF3410) ABEKA_1787 PF00152 tRNA synthetases class II (D, K and N) ABEKA_1788 PF12627 Probable RNA and SrmB- binding site of polymerase A ABEKA_1788 PF01743 Poly A polymerase head domain ABEKA_1789 PF03949 Malic enzyme, NAD binding domain ABEKA_1789 PF01515 Phosphate acetyl/butaryl transferase ABEKA_1789 PF00390 Malic enzyme, N-terminal domain ABEKA_1790 PF00563 EAL domain ABEKA_1790 PF00498 FHA domain ABEKA_1790 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_1791 PF04452 RNA methyltransferase ABEKA_1792 PF02219 Methylenetetrahydrofolate reductase ABEKA_1793 PF05221 S-adenosyl-L-homocysteine hydrolase ABEKA_1793 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABEKA_1799 PF18073 Rubredoxin metal binding domain ABEKA_1801 PF01235 Sodium:alanine symporter family ABEKA_1802 PF00324 Amino acid permease ABEKA_1804 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABEKA_1804 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABEKA_1805 PF01678 Diaminopimelate epimerase ABEKA_1806 PF00561 alpha/beta hydrolase fold ABEKA_1807 PF02899 Phage integrase, N-terminal SAM-like domain ABEKA_1807 PF00589 Phage integrase family ABEKA_1809 PF01037 Lrp/AsnC ligand binding domain ABEKA_1810 PF01810 LysE type translocator ABEKA_1811 PF01012 Electron transfer flavoprotein domain ABEKA_1812 PF01012 Electron transfer flavoprotein domain ABEKA_1812 PF00766 Electron transfer flavoprotein FAD-binding domain ABEKA_1814 PF00521 DNA gyrase/topoisomerase IV, subunit A ABEKA_1814 PF03989 DNA gyrase C-terminal domain, beta-propeller ABEKA_1818 PF13533 Biotin-lipoyl like ABEKA_1821 PF00266 Aminotransferase class-V ABEKA_1824 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABEKA_1827 PF02687 FtsX-like permease family ABEKA_1827 PF12704 MacB-like periplasmic core domain ABEKA_1828 PF00005 ABC transporter ABEKA_1829 PF00753 Metallo-beta-lactamase superfamily ABEKA_1829 PF03772 Competence protein ABEKA_1829 PF13567 Domain of unknown function (DUF4131) ABEKA_1831 PF06965 Na+/H+ antiporter 1 ABEKA_1831 PF01343 Peptidase family S49 ABEKA_1832 PF00561 alpha/beta hydrolase fold ABEKA_1832 PF08386 TAP-like protein ABEKA_1833 PF00551 Formyl transferase ABEKA_1834 PF00586 AIR synthase related protein, N-terminal domain ABEKA_1834 PF02769 AIR synthase related protein, C-terminal domain ABEKA_1835 PF01594 AI-2E family transporter ABEKA_1836 PF08299 Bacterial dnaA protein helix-turn-helix ABEKA_1836 PF00308 Bacterial dnaA protein ABEKA_1836 PF11638 DnaA N-terminal domain ABEKA_1841 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_1844 PF13006 Insertion element 4 transposase N-terminal ABEKA_1844 PF01609 Transposase DDE domain ABEKA_1848 PF00588 SpoU rRNA Methylase family ABEKA_1848 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABEKA_1849 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABEKA_1852 PF00691 OmpA family ABEKA_1853 PF04052 TolB amino-terminal domain ABEKA_1853 PF07676 WD40-like Beta Propeller Repeat ABEKA_1855 PF02472 Biopolymer transport protein ExbD/TolR ABEKA_1856 PF01618 MotA/TolQ/ExbB proton channel family ABEKA_1857 PF03061 Thioesterase superfamily ABEKA_1858 PF07687 Peptidase dimerisation domain ABEKA_1858 PF01546 Peptidase family M20/M25/M40 ABEKA_1859 PF03069 Acetamidase/Formamidase family ABEKA_1861 PF05491 RuvB C-terminal winged helix domain ABEKA_1861 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABEKA_1861 PF17864 RuvB AAA lid domain ABEKA_1862 PF01330 RuvA N terminal domain ABEKA_1862 PF07499 RuvA, C-terminal domain ABEKA_1864 PF01966 HD domain ABEKA_1868 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ABEKA_1868 PF02769 AIR synthase related protein, C-terminal domain ABEKA_1868 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABEKA_1871 PF01494 FAD binding domain ABEKA_1872 PF03466 LysR substrate binding domain ABEKA_1872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_1874 PF01784 NIF3 (NGG1p interacting factor 3) ABEKA_1875 PF03055 Retinal pigment epithelial membrane protein ABEKA_1876 PF13737 Transposase DDE domain ABEKA_1877 PF00881 Nitroreductase family ABEKA_1878 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_1879 PF01467 Cytidylyltransferase-like ABEKA_1879 PF00293 NUDIX domain ABEKA_1880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_1880 PF03466 LysR substrate binding domain ABEKA_1881 PF01810 LysE type translocator ABEKA_1884 PF04264 YceI-like domain ABEKA_1885 PF00578 AhpC/TSA family ABEKA_1887 PF06508 Queuosine biosynthesis protein QueC ABEKA_1888 PF04055 Radical SAM superfamily ABEKA_1889 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_1889 PF14602 Hexapeptide repeat of succinyl-transferase ABEKA_1889 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABEKA_1892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_1892 PF03466 LysR substrate binding domain ABEKA_1893 PF00005 ABC transporter ABEKA_1893 PF12857 TOBE-like domain ABEKA_1894 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_1895 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_1900 PF02618 YceG-like family ABEKA_1901 PF02223 Thymidylate kinase ABEKA_1903 PF00890 FAD binding domain ABEKA_1903 PF02910 Fumarate reductase flavoprotein C-term ABEKA_1904 PF13180 PDZ domain ABEKA_1906 PF03144 Elongation factor Tu domain 2 ABEKA_1906 PF06421 GTP-binding protein LepA C-terminus ABEKA_1906 PF00009 Elongation factor Tu GTP binding domain ABEKA_1906 PF00679 Elongation factor G C-terminus ABEKA_1907 PF10502 Signal peptidase, peptidase S26 ABEKA_1909 PF00035 Double-stranded RNA binding motif ABEKA_1909 PF14622 Ribonuclease-III-like ABEKA_1910 PF07650 KH domain ABEKA_1910 PF01926 50S ribosome-binding GTPase ABEKA_1912 PF02565 Recombination protein O C terminal ABEKA_1912 PF11967 Recombination protein O N terminal ABEKA_1913 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABEKA_1914 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ABEKA_1918 PF01554 MatE ABEKA_1919 PF00155 Aminotransferase class I and II ABEKA_1920 PF00557 Metallopeptidase family M24 ABEKA_1921 PF00318 Ribosomal protein S2 ABEKA_1922 PF00889 Elongation factor TS ABEKA_1924 PF13276 HTH-like domain ABEKA_1924 PF00665 Integrase core domain ABEKA_1924 PF13333 Integrase core domain ABEKA_1927 PF03330 Lytic transglycolase ABEKA_1927 PF05036 Sporulation related domain ABEKA_1928 PF13406 Transglycosylase SLT domain ABEKA_1930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ABEKA_1930 PF14489 QueF-like protein ABEKA_1931 PF01061 ABC-2 type transporter ABEKA_1932 PF00005 ABC transporter ABEKA_1934 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_1934 PF08448 PAS fold ABEKA_1944 PF00464 Serine hydroxymethyltransferase ABEKA_1945 PF01272 Transcription elongation factor, GreA/GreB, C-term ABEKA_1945 PF14760 Rnk N-terminus ABEKA_1947 PF05816 Toxic anion resistance protein (TelA) ABEKA_1949 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_1949 PF13192 Thioredoxin domain ABEKA_1951 PF00037 4Fe-4S binding domain ABEKA_1952 PF01136 Peptidase family U32 ABEKA_1952 PF16325 Peptidase family U32 C-terminal domain ABEKA_1953 PF13411 MerR HTH family regulatory protein ABEKA_1957 PF00175 Oxidoreductase NAD-binding domain ABEKA_1957 PF00970 Oxidoreductase FAD-binding domain ABEKA_1958 PF01980 tRNA-methyltransferase O ABEKA_1958 PF18389 TrmO C-terminal domain ABEKA_1960 PF00437 Type II/IV secretion system protein ABEKA_1960 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ABEKA_1962 PF00072 Response regulator receiver domain ABEKA_1962 PF00486 Transcriptional regulatory protein, C terminal ABEKA_1963 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_1963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_1963 PF08521 Two-component sensor kinase N-terminal ABEKA_1965 PF00293 NUDIX domain ABEKA_1967 PF00912 Transglycosylase ABEKA_1967 PF00905 Penicillin binding protein transpeptidase domain ABEKA_1967 PF14814 Bifunctional transglycosylase second domain ABEKA_1968 PF01513 ATP-NAD kinase ABEKA_1969 PF07023 Protein of unknown function (DUF1315) ABEKA_1970 PF02885 Glycosyl transferase family, helical bundle domain ABEKA_1970 PF00591 Glycosyl transferase family, a/b domain ABEKA_1971 PF00375 Sodium:dicarboxylate symporter family ABEKA_1972 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_1972 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_1972 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_1973 PF01965 DJ-1/PfpI family ABEKA_1974 PF01842 ACT domain ABEKA_1974 PF00800 Prephenate dehydratase ABEKA_1974 PF01817 Chorismate mutase type II ABEKA_1975 PF00155 Aminotransferase class I and II ABEKA_1976 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABEKA_1980 PF03883 Peroxide stress protein YaaA ABEKA_1981 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1981 PF13359 DDE superfamily endonuclease ABEKA_1982 PF13359 DDE superfamily endonuclease ABEKA_1982 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_1984 PF00860 Permease family ABEKA_1985 PF00962 Adenosine/AMP deaminase ABEKA_1992 PF01351 Ribonuclease HII ABEKA_1993 PF02599 Global regulator protein family ABEKA_1994 PF01842 ACT domain ABEKA_1994 PF13840 ACT domain ABEKA_1994 PF00696 Amino acid kinase family ABEKA_1995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABEKA_1995 PF01411 tRNA synthetases class II (A) ABEKA_1995 PF02272 DHHA1 domain ABEKA_1996 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABEKA_1996 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABEKA_1999 PF03591 AzlC protein ABEKA_2001 PF01037 Lrp/AsnC ligand binding domain ABEKA_2002 PF13393 Histidyl-tRNA synthetase ABEKA_2003 PF00709 Adenylosuccinate synthetase ABEKA_2006 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABEKA_2007 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2008 PF00768 D-alanyl-D-alanine carboxypeptidase ABEKA_2013 PF00576 HIUase/Transthyretin family ABEKA_2014 PF00849 RNA pseudouridylate synthase ABEKA_2015 PF00180 Isocitrate/isopropylmalate dehydrogenase ABEKA_2019 PF00155 Aminotransferase class I and II ABEKA_2020 PF01641 SelR domain ABEKA_2021 PF00255 Glutathione peroxidase ABEKA_2022 PF00155 Aminotransferase class I and II ABEKA_2023 PF01909 Nucleotidyltransferase domain ABEKA_2023 PF01966 HD domain ABEKA_2023 PF08335 GlnD PII-uridylyltransferase ABEKA_2024 PF02222 ATP-grasp domain ABEKA_2026 PF05437 Branched-chain amino acid transport protein (AzlD) ABEKA_2027 PF03591 AzlC protein ABEKA_2030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABEKA_2030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABEKA_2031 PF01926 50S ribosome-binding GTPase ABEKA_2031 PF06071 Protein of unknown function (DUF933) ABEKA_2035 PF01709 Transcriptional regulator ABEKA_2036 PF01553 Acyltransferase ABEKA_2047 PF02814 UreE urease accessory protein, N-terminal domain ABEKA_2047 PF05194 UreE urease accessory protein, C-terminal domain ABEKA_2048 PF01730 UreF ABEKA_2049 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABEKA_2051 PF01774 UreD urease accessory protein ABEKA_2052 PF00547 Urease, gamma subunit ABEKA_2053 PF00699 Urease beta subunit ABEKA_2055 PF01979 Amidohydrolase family ABEKA_2055 PF00449 Urease alpha-subunit, N-terminal domain ABEKA_2056 PF13737 Transposase DDE domain ABEKA_2060 PF00576 HIUase/Transthyretin family ABEKA_2061 PF00860 Permease family ABEKA_2062 PF03502 Nucleoside-specific channel-forming protein, Tsx ABEKA_2063 PF04115 Ureidoglycolate lyase ABEKA_2064 PF03561 Allantoicase repeat ABEKA_2065 PF01494 FAD binding domain ABEKA_2066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2066 PF03466 LysR substrate binding domain ABEKA_2067 PF00355 Rieske [2Fe-2S] domain ABEKA_2071 PF02384 N-6 DNA Methylase ABEKA_2075 PF07728 AAA domain (dynein-related subfamily) ABEKA_2075 PF12102 Domain of unknown function (DUF3578) ABEKA_2075 PF07728 AAA domain (dynein-related subfamily) ABEKA_2075 PF12102 Domain of unknown function (DUF3578) ABEKA_2077 PF00580 UvrD/REP helicase N-terminal domain ABEKA_2077 PF13361 UvrD-like helicase C-terminal domain ABEKA_2078 PF02463 RecF/RecN/SMC N terminal domain ABEKA_2080 PF03050 Transposase IS66 family ABEKA_2080 PF13817 IS66 C-terminal element ABEKA_2080 PF13007 Transposase C of IS166 homeodomain ABEKA_2080 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_2085 PF00149 Calcineurin-like phosphoesterase ABEKA_2092 PF08331 Domain of unknown function (DUF1730) ABEKA_2093 PF03853 YjeF-related protein N-terminus ABEKA_2093 PF01256 Carbohydrate kinase ABEKA_2094 PF00708 Acylphosphatase ABEKA_2095 PF02075 Crossover junction endodeoxyribonuclease RuvC ABEKA_2097 PF01810 LysE type translocator ABEKA_2099 PF13192 Thioredoxin domain ABEKA_2099 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2103 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABEKA_2103 PF00578 AhpC/TSA family ABEKA_2105 PF00270 DEAD/DEAH box helicase ABEKA_2105 PF11898 Domain of unknown function (DUF3418) ABEKA_2105 PF04408 Helicase associated domain (HA2) ABEKA_2105 PF00271 Helicase conserved C-terminal domain ABEKA_2105 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABEKA_2106 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABEKA_2106 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABEKA_2109 PF14493 Helix-turn-helix domain ABEKA_2109 PF05970 PIF1-like helicase ABEKA_2111 PF04284 Protein of unknown function (DUF441) ABEKA_2112 PF00849 RNA pseudouridylate synthase ABEKA_2112 PF01479 S4 domain ABEKA_2115 PF00849 RNA pseudouridylate synthase ABEKA_2115 PF01479 S4 domain ABEKA_2116 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABEKA_2117 PF08676 MutL C terminal dimerisation domain ABEKA_2117 PF01119 DNA mismatch repair protein, C-terminal domain ABEKA_2119 PF17209 Hfq protein ABEKA_2120 PF09312 SurA N-terminal domain ABEKA_2120 PF00639 PPIC-type PPIASE domain ABEKA_2121 PF03968 OstA-like protein ABEKA_2121 PF04453 LPS transport system D ABEKA_2122 PF01636 Phosphotransferase enzyme family ABEKA_2123 PF00483 Nucleotidyl transferase ABEKA_2124 PF02527 rRNA small subunit methyltransferase G ABEKA_2125 PF13614 AAA domain ABEKA_2126 PF02195 ParB-like nuclease domain ABEKA_2126 PF17762 HTH domain found in ParB protein ABEKA_2127 PF01618 MotA/TolQ/ExbB proton channel family ABEKA_2129 PF00664 ABC transporter transmembrane region ABEKA_2129 PF00005 ABC transporter ABEKA_2130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABEKA_2131 PF02348 Cytidylyltransferase ABEKA_2132 PF09115 DNA polymerase III, delta subunit, C terminal ABEKA_2134 PF01026 TatD related DNase ABEKA_2135 PF00440 Bacterial regulatory proteins, tetR family ABEKA_2136 PF12019 Type II transport protein GspH ABEKA_2138 PF07963 Prokaryotic N-terminal methylation motif ABEKA_2138 PF11612 Type II secretion system (T2SS), protein J ABEKA_2139 PF03934 Type II secretion system (T2SS), protein K ABEKA_2141 PF03167 Uracil DNA glycosylase superfamily ABEKA_2143 PF14437 MafB19-like deaminase ABEKA_2145 PF02224 Cytidylate kinase ABEKA_2146 PF00575 S1 RNA binding domain ABEKA_2147 PF00216 Bacterial DNA-binding protein ABEKA_2149 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABEKA_2150 PF03956 Lysine exporter LysO ABEKA_2151 PF00743 Flavin-binding monooxygenase-like ABEKA_2152 PF00743 Flavin-binding monooxygenase-like ABEKA_2154 PF03969 AFG1-like ATPase ABEKA_2155 PF01274 Malate synthase ABEKA_2156 PF00171 Aldehyde dehydrogenase family ABEKA_2159 PF03741 Integral membrane protein TerC family ABEKA_2159 PF03471 Transporter associated domain ABEKA_2161 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_2163 PF02110 Hydroxyethylthiazole kinase family ABEKA_2167 PF11940 Domain of unknown function (DUF3458) Ig-like fold ABEKA_2167 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ABEKA_2167 PF01433 Peptidase family M1 domain ABEKA_2169 PF00582 Universal stress protein family ABEKA_2170 PF00582 Universal stress protein family ABEKA_2171 PF00135 Carboxylesterase family ABEKA_2172 PF00893 Small Multidrug Resistance protein ABEKA_2173 PF03594 Benzoate membrane transport protein ABEKA_2174 PF01810 LysE type translocator ABEKA_2175 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABEKA_2176 PF03466 LysR substrate binding domain ABEKA_2176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2179 PF13006 Insertion element 4 transposase N-terminal ABEKA_2179 PF01609 Transposase DDE domain ABEKA_2180 PF02803 Thiolase, C-terminal domain ABEKA_2180 PF00108 Thiolase, N-terminal domain ABEKA_2183 PF00144 Beta-lactamase ABEKA_2185 PF12169 DNA polymerase III subunits gamma and tau domain III ABEKA_2185 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABEKA_2185 PF12170 DNA polymerase III tau subunit V interacting with alpha ABEKA_2186 PF03061 Thioesterase superfamily ABEKA_2187 PF00465 Iron-containing alcohol dehydrogenase ABEKA_2188 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABEKA_2189 PF01565 FAD binding domain ABEKA_2189 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABEKA_2192 PF01645 Conserved region in glutamate synthase ABEKA_2194 PF14403 Circularly permuted ATP-grasp type 2 ABEKA_2196 PF08379 Bacterial transglutaminase-like N-terminal region ABEKA_2196 PF01841 Transglutaminase-like superfamily ABEKA_2199 PF00842 Alanine racemase, C-terminal domain ABEKA_2199 PF01168 Alanine racemase, N-terminal domain ABEKA_2200 PF00772 DnaB-like helicase N terminal domain ABEKA_2200 PF03796 DnaB-like helicase C terminal domain ABEKA_2201 PF03948 Ribosomal protein L9, C-terminal domain ABEKA_2201 PF01281 Ribosomal protein L9, N-terminal domain ABEKA_2202 PF01084 Ribosomal protein S18 ABEKA_2203 PF01250 Ribosomal protein S6 ABEKA_2204 PF01040 UbiA prenyltransferase family ABEKA_2205 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABEKA_2206 PF00510 Cytochrome c oxidase subunit III ABEKA_2207 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABEKA_2208 PF06481 COX Aromatic Rich Motif ABEKA_2208 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABEKA_2210 PF02896 PEP-utilising enzyme, TIM barrel domain ABEKA_2210 PF00391 PEP-utilising enzyme, mobile domain ABEKA_2210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABEKA_2211 PF03618 Kinase/pyrophosphorylase ABEKA_2213 PF00296 Luciferase-like monooxygenase ABEKA_2216 PF03462 PCRF domain ABEKA_2216 PF00472 RF-1 domain ABEKA_2217 PF17827 PrmC N-terminal domain ABEKA_2217 PF05175 Methyltransferase small domain ABEKA_2220 PF00106 short chain dehydrogenase ABEKA_2221 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2221 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2221 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2222 PF00501 AMP-binding enzyme ABEKA_2222 PF13193 AMP-binding enzyme C-terminal domain ABEKA_2225 PF00899 ThiF family ABEKA_2226 PF03109 ABC1 family ABEKA_2227 PF02152 Dihydroneopterin aldolase ABEKA_2232 PF03232 Ubiquinone biosynthesis protein COQ7 ABEKA_2233 PF07690 Major Facilitator Superfamily ABEKA_2234 PF01103 Surface antigen ABEKA_2234 PF17243 POTRA domain TamA domain 1 ABEKA_2234 PF07244 Surface antigen variable number repeat ABEKA_2243 PF02601 Exonuclease VII, large subunit ABEKA_2243 PF13742 OB-fold nucleic acid binding domain ABEKA_2247 PF11791 Aconitate B N-terminal domain ABEKA_2247 PF00330 Aconitase family (aconitate hydratase) ABEKA_2247 PF06434 Aconitate hydratase 2 N-terminus ABEKA_2256 PF05525 Branched-chain amino acid transport protein ABEKA_2257 PF00557 Metallopeptidase family M24 ABEKA_2258 PF03466 LysR substrate binding domain ABEKA_2258 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2259 PF02146 Sir2 family ABEKA_2262 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_2262 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2267 PF06418 CTP synthase N-terminus ABEKA_2267 PF00117 Glutamine amidotransferase class-I ABEKA_2268 PF00793 DAHP synthetase I family ABEKA_2269 PF00113 Enolase, C-terminal TIM barrel domain ABEKA_2269 PF03952 Enolase, N-terminal domain ABEKA_2270 PF04977 Septum formation initiator ABEKA_2271 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABEKA_2272 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_2273 PF01098 Cell cycle protein ABEKA_2276 PF08173 Membrane bound YbgT-like protein ABEKA_2277 PF02322 Cytochrome bd terminal oxidase subunit II ABEKA_2278 PF01654 Cytochrome bd terminal oxidase subunit I ABEKA_2281 PF13936 Helix-turn-helix domain ABEKA_2281 PF00665 Integrase core domain ABEKA_2282 PF00267 Gram-negative porin ABEKA_2283 PF01230 HIT domain ABEKA_2285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABEKA_2285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABEKA_2290 PF01053 Cys/Met metabolism PLP-dependent enzyme ABEKA_2291 PF02575 YbaB/EbfC DNA-binding family ABEKA_2292 PF02132 RecR protein ABEKA_2292 PF13662 Toprim domain ABEKA_2293 PF01612 3'-5' exonuclease ABEKA_2293 PF00570 HRDC domain ABEKA_2294 PF05166 YcgL domain ABEKA_2296 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_2296 PF17862 AAA+ lid domain ABEKA_2296 PF01434 Peptidase family M41 ABEKA_2298 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_2299 PF00571 CBS domain ABEKA_2304 PF00675 Insulinase (Peptidase family M16) ABEKA_2304 PF05193 Peptidase M16 inactive domain ABEKA_2306 PF02881 SRP54-type protein, helical bundle domain ABEKA_2306 PF00448 SRP54-type protein, GTPase domain ABEKA_2311 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ABEKA_2320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2320 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2321 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2321 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2321 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2322 PF03109 ABC1 family ABEKA_2325 PF05175 Methyltransferase small domain ABEKA_2326 PF01264 Chorismate synthase ABEKA_2329 PF01266 FAD dependent oxidoreductase ABEKA_2331 PF02542 YgbB family ABEKA_2333 PF00793 DAHP synthetase I family ABEKA_2334 PF01925 Sulfite exporter TauE/SafE ABEKA_2335 PF02684 Lipid-A-disaccharide synthetase ABEKA_2336 PF12852 Cupin ABEKA_2336 PF12833 Helix-turn-helix domain ABEKA_2337 PF00487 Fatty acid desaturase ABEKA_2338 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2338 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2338 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_2338 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2339 PF02805 Metal binding domain of Ada ABEKA_2339 PF12833 Helix-turn-helix domain ABEKA_2340 PF07690 Major Facilitator Superfamily ABEKA_2342 PF01654 Cytochrome bd terminal oxidase subunit I ABEKA_2343 PF02322 Cytochrome bd terminal oxidase subunit II ABEKA_2345 PF00565 Staphylococcal nuclease homologue ABEKA_2347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2347 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2350 PF00106 short chain dehydrogenase ABEKA_2356 PF13091 PLD-like domain ABEKA_2357 PF00107 Zinc-binding dehydrogenase ABEKA_2357 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_2358 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_2358 PF00107 Zinc-binding dehydrogenase ABEKA_2359 PF00107 Zinc-binding dehydrogenase ABEKA_2359 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_2361 PF00793 DAHP synthetase I family ABEKA_2362 PF00437 Type II/IV secretion system protein ABEKA_2363 PF01597 Glycine cleavage H-protein ABEKA_2364 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABEKA_2364 PF12833 Helix-turn-helix domain ABEKA_2365 PF00664 ABC transporter transmembrane region ABEKA_2365 PF00005 ABC transporter ABEKA_2366 PF00924 Mechanosensitive ion channel ABEKA_2367 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ABEKA_2369 PF00375 Sodium:dicarboxylate symporter family ABEKA_2370 PF01740 STAS domain ABEKA_2370 PF00916 Sulfate permease family ABEKA_2372 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_2373 PF00403 Heavy-metal-associated domain ABEKA_2374 PF09278 MerR, DNA binding ABEKA_2374 PF00376 MerR family regulatory protein ABEKA_2376 PF00440 Bacterial regulatory proteins, tetR family ABEKA_2376 PF08360 QacR-like protein, C-terminal region ABEKA_2378 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_2378 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2378 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2378 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2379 PF02803 Thiolase, C-terminal domain ABEKA_2379 PF00108 Thiolase, N-terminal domain ABEKA_2380 PF15887 Putative zinc-binding metallo-peptidase ABEKA_2380 PF10005 zinc-ribbon domain ABEKA_2383 PF12146 Serine aminopeptidase, S33 ABEKA_2384 PF00108 Thiolase, N-terminal domain ABEKA_2384 PF02803 Thiolase, C-terminal domain ABEKA_2385 PF01144 Coenzyme A transferase ABEKA_2386 PF01144 Coenzyme A transferase ABEKA_2387 PF03594 Benzoate membrane transport protein ABEKA_2388 PF00106 short chain dehydrogenase ABEKA_2389 PF00111 2Fe-2S iron-sulfur cluster binding domain ABEKA_2389 PF00970 Oxidoreductase FAD-binding domain ABEKA_2389 PF00175 Oxidoreductase NAD-binding domain ABEKA_2390 PF00866 Ring hydroxylating beta subunit ABEKA_2391 PF00355 Rieske [2Fe-2S] domain ABEKA_2391 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABEKA_2392 PF04444 Catechol dioxygenase N terminus ABEKA_2392 PF00775 Dioxygenase ABEKA_2393 PF02426 Muconolactone delta-isomerase ABEKA_2394 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABEKA_2394 PF13378 Enolase C-terminal domain-like ABEKA_2395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2395 PF03466 LysR substrate binding domain ABEKA_2396 PF07690 Major Facilitator Superfamily ABEKA_2398 PF00392 Bacterial regulatory proteins, gntR family ABEKA_2398 PF00155 Aminotransferase class I and II ABEKA_2400 PF00392 Bacterial regulatory proteins, gntR family ABEKA_2400 PF00155 Aminotransferase class I and II ABEKA_2401 PF00501 AMP-binding enzyme ABEKA_2401 PF13193 AMP-binding enzyme C-terminal domain ABEKA_2402 PF00970 Oxidoreductase FAD-binding domain ABEKA_2402 PF00042 Globin ABEKA_2402 PF00175 Oxidoreductase NAD-binding domain ABEKA_2403 PF00487 Fatty acid desaturase ABEKA_2405 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_2406 PF03466 LysR substrate binding domain ABEKA_2406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2409 PF00289 Biotin carboxylase, N-terminal domain ABEKA_2409 PF02785 Biotin carboxylase C-terminal domain ABEKA_2409 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABEKA_2410 PF13936 Helix-turn-helix domain ABEKA_2410 PF00665 Integrase core domain ABEKA_2413 PF13737 Transposase DDE domain ABEKA_2415 PF01402 Ribbon-helix-helix protein, copG family ABEKA_2415 PF08753 NikR C terminal nickel binding domain ABEKA_2416 PF01425 Amidase ABEKA_2417 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABEKA_2418 PF00893 Small Multidrug Resistance protein ABEKA_2421 PF00005 ABC transporter ABEKA_2422 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_2423 PF00005 ABC transporter ABEKA_2425 PF04324 BFD-like [2Fe-2S] binding domain ABEKA_2425 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABEKA_2425 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2425 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABEKA_2425 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABEKA_2426 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABEKA_2426 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2426 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABEKA_2426 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABEKA_2426 PF04324 BFD-like [2Fe-2S] binding domain ABEKA_2427 PF00384 Molybdopterin oxidoreductase ABEKA_2427 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABEKA_2427 PF04324 BFD-like [2Fe-2S] binding domain ABEKA_2427 PF01568 Molydopterin dinucleotide binding domain ABEKA_2428 PF12804 MobA-like NTP transferase domain ABEKA_2429 PF06463 Molybdenum Cofactor Synthesis C ABEKA_2429 PF04055 Radical SAM superfamily ABEKA_2431 PF02391 MoaE protein ABEKA_2432 PF01967 MoaC family ABEKA_2432 PF00994 Probable molybdopterin binding domain ABEKA_2433 PF00994 Probable molybdopterin binding domain ABEKA_2433 PF03454 MoeA C-terminal region (domain IV) ABEKA_2433 PF03453 MoeA N-terminal region (domain I and II) ABEKA_2435 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_2436 PF00005 ABC transporter ABEKA_2436 PF03459 TOBE domain ABEKA_2437 PF07690 Major Facilitator Superfamily ABEKA_2438 PF02560 Cyanate lyase C-terminal domain ABEKA_2439 PF01226 Formate/nitrite transporter ABEKA_2440 PF00069 Protein kinase domain ABEKA_2443 PF03466 LysR substrate binding domain ABEKA_2443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2444 PF00593 TonB dependent receptor ABEKA_2444 PF07715 TonB-dependent Receptor Plug Domain ABEKA_2446 PF02028 BCCT, betaine/carnitine/choline family transporter ABEKA_2447 PF00440 Bacterial regulatory proteins, tetR family ABEKA_2447 PF13977 BetI-type transcriptional repressor, C-terminal ABEKA_2448 PF00171 Aldehyde dehydrogenase family ABEKA_2449 PF00732 GMC oxidoreductase ABEKA_2449 PF05199 GMC oxidoreductase ABEKA_2452 PF18381 YcaO cyclodehydratase C-terminal domain ABEKA_2452 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ABEKA_2454 PF09339 IclR helix-turn-helix domain ABEKA_2455 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2456 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2456 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2456 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2457 PF07690 Major Facilitator Superfamily ABEKA_2458 PF01144 Coenzyme A transferase ABEKA_2459 PF01144 Coenzyme A transferase ABEKA_2460 PF08448 PAS fold ABEKA_2460 PF08447 PAS fold ABEKA_2460 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_2460 PF00563 EAL domain ABEKA_2461 PF07690 Major Facilitator Superfamily ABEKA_2463 PF07690 Major Facilitator Superfamily ABEKA_2464 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_2465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABEKA_2465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABEKA_2465 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABEKA_2466 PF02803 Thiolase, C-terminal domain ABEKA_2466 PF00108 Thiolase, N-terminal domain ABEKA_2468 PF00596 Class II Aldolase and Adducin N-terminal domain ABEKA_2469 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABEKA_2470 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_2471 PF03060 Nitronate monooxygenase ABEKA_2472 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2472 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABEKA_2472 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2472 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2473 PF00561 alpha/beta hydrolase fold ABEKA_2474 PF00743 Flavin-binding monooxygenase-like ABEKA_2475 PF00501 AMP-binding enzyme ABEKA_2475 PF13193 AMP-binding enzyme C-terminal domain ABEKA_2476 PF02515 CoA-transferase family III ABEKA_2477 PF07690 Major Facilitator Superfamily ABEKA_2485 PF00171 Aldehyde dehydrogenase family ABEKA_2486 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABEKA_2486 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABEKA_2487 PF00501 AMP-binding enzyme ABEKA_2487 PF13193 AMP-binding enzyme C-terminal domain ABEKA_2488 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2488 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2488 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2489 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_2493 PF00324 Amino acid permease ABEKA_2494 PF00155 Aminotransferase class I and II ABEKA_2494 PF00392 Bacterial regulatory proteins, gntR family ABEKA_2495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABEKA_2495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABEKA_2496 PF00202 Aminotransferase class-III ABEKA_2497 PF00171 Aldehyde dehydrogenase family ABEKA_2500 PF00355 Rieske [2Fe-2S] domain ABEKA_2502 PF00884 Sulfatase ABEKA_2502 PF08019 Phosphoethanolamine transferase EptA/EptB ABEKA_2503 PF00486 Transcriptional regulatory protein, C terminal ABEKA_2503 PF00072 Response regulator receiver domain ABEKA_2504 PF08521 Two-component sensor kinase N-terminal ABEKA_2504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_2504 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_2506 PF01219 Prokaryotic diacylglycerol kinase ABEKA_2508 PF00501 AMP-binding enzyme ABEKA_2512 PF00691 OmpA family ABEKA_2512 PF05736 OprF membrane domain ABEKA_2514 PF00665 Integrase core domain ABEKA_2514 PF13936 Helix-turn-helix domain ABEKA_2516 PF12697 Alpha/beta hydrolase family ABEKA_2517 PF13936 Helix-turn-helix domain ABEKA_2517 PF00665 Integrase core domain ABEKA_2523 PF00206 Lyase ABEKA_2523 PF10415 Fumarase C C-terminus ABEKA_2524 PF16363 GDP-mannose 4,6 dehydratase ABEKA_2525 PF02635 DsrE/DsrF-like family ABEKA_2531 PF04073 Aminoacyl-tRNA editing domain ABEKA_2532 PF01220 Dehydroquinase class II ABEKA_2533 PF00364 Biotin-requiring enzyme ABEKA_2534 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABEKA_2534 PF02785 Biotin carboxylase C-terminal domain ABEKA_2534 PF00289 Biotin carboxylase, N-terminal domain ABEKA_2536 PF17151 Periplasmic sensor domain ABEKA_2536 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_2537 PF01425 Amidase ABEKA_2538 PF12832 MFS_1 like family ABEKA_2539 PF00199 Catalase ABEKA_2550 PF00994 Probable molybdopterin binding domain ABEKA_2550 PF02464 Competence-damaged protein ABEKA_2552 PF00285 Citrate synthase, C-terminal domain ABEKA_2556 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABEKA_2556 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABEKA_2558 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ABEKA_2559 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_2559 PF07724 AAA domain (Cdc48 subfamily) ABEKA_2559 PF17871 AAA lid domain ABEKA_2559 PF02861 Clp amino terminal domain, pathogenicity island component ABEKA_2559 PF10431 C-terminal, D2-small domain, of ClpB protein ABEKA_2560 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABEKA_2562 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABEKA_2562 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABEKA_2564 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABEKA_2565 PF00585 C-terminal regulatory domain of Threonine dehydratase ABEKA_2565 PF00291 Pyridoxal-phosphate dependent enzyme ABEKA_2568 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_2568 PF13359 DDE superfamily endonuclease ABEKA_2572 PF02254 TrkA-N domain ABEKA_2572 PF02080 TrkA-C domain ABEKA_2573 PF02386 Cation transport protein ABEKA_2574 PF02253 Phospholipase A1 ABEKA_2575 PF05193 Peptidase M16 inactive domain ABEKA_2575 PF08367 Peptidase M16C associated ABEKA_2575 PF00675 Insulinase (Peptidase family M16) ABEKA_2577 PF00294 pfkB family carbohydrate kinase ABEKA_2579 PF07290 Protein of unknown function (DUF1449) ABEKA_2583 PF05698 Bacterial trigger factor protein (TF) C-terminus ABEKA_2584 PF00216 Bacterial DNA-binding protein ABEKA_2587 PF02082 Transcriptional regulator ABEKA_2588 PF00266 Aminotransferase class-V ABEKA_2589 PF01592 NifU-like N terminal domain ABEKA_2590 PF01521 Iron-sulphur cluster biosynthesis ABEKA_2591 PF00226 DnaJ domain ABEKA_2591 PF07743 HSCB C-terminal oligomerisation domain ABEKA_2592 PF00012 Hsp70 protein ABEKA_2593 PF00111 2Fe-2S iron-sulfur cluster binding domain ABEKA_2594 PF00211 Adenylate and Guanylate cyclase catalytic domain ABEKA_2596 PF02559 CarD-like/TRCF domain ABEKA_2596 PF00270 DEAD/DEAH box helicase ABEKA_2596 PF00271 Helicase conserved C-terminal domain ABEKA_2596 PF03461 TRCF domain ABEKA_2596 PF17757 UvrB interaction domain ABEKA_2598 PF00206 Lyase ABEKA_2598 PF10415 Fumarase C C-terminus ABEKA_2599 PF00474 Sodium:solute symporter family ABEKA_2600 PF01037 Lrp/AsnC ligand binding domain ABEKA_2601 PF01619 Proline dehydrogenase ABEKA_2601 PF14850 DNA-binding domain of Proline dehydrogenase ABEKA_2601 PF00171 Aldehyde dehydrogenase family ABEKA_2601 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ABEKA_2602 PF05958 tRNA (Uracil-5-)-methyltransferase ABEKA_2605 PF01062 Bestrophin, RFP-TM, chloride channel ABEKA_2606 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABEKA_2606 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABEKA_2609 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABEKA_2610 PF00149 Calcineurin-like phosphoesterase ABEKA_2614 PF03328 HpcH/HpaI aldolase/citrate lyase family ABEKA_2615 PF00881 Nitroreductase family ABEKA_2617 PF01116 Fructose-bisphosphate aldolase class-II ABEKA_2619 PF00162 Phosphoglycerate kinase ABEKA_2621 PF02545 Maf-like protein ABEKA_2622 PF08007 Cupin superfamily protein ABEKA_2623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_2623 PF07730 Histidine kinase ABEKA_2624 PF00196 Bacterial regulatory proteins, luxR family ABEKA_2624 PF00072 Response regulator receiver domain ABEKA_2626 PF03737 Aldolase/RraA ABEKA_2627 PF13460 NAD(P)H-binding ABEKA_2628 PF01649 Ribosomal protein S20 ABEKA_2631 PF00459 Inositol monophosphatase family ABEKA_2632 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_2633 PF01479 S4 domain ABEKA_2634 PF00154 recA bacterial DNA recombination protein ABEKA_2635 PF02631 RecX family ABEKA_2637 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABEKA_2637 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_2638 PF07977 FabA-like domain ABEKA_2639 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_2639 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABEKA_2641 PF01103 Surface antigen ABEKA_2641 PF07244 Surface antigen variable number repeat ABEKA_2642 PF13180 PDZ domain ABEKA_2642 PF17820 PDZ domain ABEKA_2642 PF02163 Peptidase family M50 ABEKA_2643 PF13288 DXP reductoisomerase C-terminal domain ABEKA_2643 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABEKA_2643 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABEKA_2645 PF01255 Putative undecaprenyl diphosphate synthase ABEKA_2646 PF01765 Ribosome recycling factor ABEKA_2647 PF00696 Amino acid kinase family ABEKA_2648 PF04055 Radical SAM superfamily ABEKA_2648 PF18693 TRAM domain ABEKA_2648 PF00919 Uncharacterized protein family UPF0004 ABEKA_2649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_2649 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_2649 PF00989 PAS fold ABEKA_2650 PF02954 Bacterial regulatory protein, Fis family ABEKA_2650 PF00072 Response regulator receiver domain ABEKA_2650 PF00158 Sigma-54 interaction domain ABEKA_2652 PF07690 Major Facilitator Superfamily ABEKA_2653 PF07690 Major Facilitator Superfamily ABEKA_2654 PF01134 Glucose inhibited division protein A ABEKA_2654 PF13932 GidA associated domain ABEKA_2662 PF02954 Bacterial regulatory protein, Fis family ABEKA_2663 PF02142 MGS-like domain ABEKA_2663 PF01808 AICARFT/IMPCHase bienzyme ABEKA_2664 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABEKA_2664 PF02843 Phosphoribosylglycinamide synthetase, C domain ABEKA_2664 PF02844 Phosphoribosylglycinamide synthetase, N domain ABEKA_2665 PF13737 Transposase DDE domain ABEKA_2668 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_2668 PF13359 DDE superfamily endonuclease ABEKA_2669 PF13302 Acetyltransferase (GNAT) domain ABEKA_2670 PF03180 NLPA lipoprotein ABEKA_2671 PF00005 ABC transporter ABEKA_2671 PF09383 NIL domain ABEKA_2672 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_2673 PF01336 OB-fold nucleic acid binding domain ABEKA_2673 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABEKA_2673 PF14579 Helix-hairpin-helix motif ABEKA_2673 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABEKA_2673 PF02811 PHP domain ABEKA_2674 PF00588 SpoU rRNA Methylase family ABEKA_2675 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_2679 PF05190 MutS family domain IV ABEKA_2679 PF00488 MutS domain V ABEKA_2679 PF05192 MutS domain III ABEKA_2679 PF01624 MutS domain I ABEKA_2679 PF05188 MutS domain II ABEKA_2680 PF00037 4Fe-4S binding domain ABEKA_2680 PF11953 Domain of unknown function (DUF3470) ABEKA_2682 PF01596 O-methyltransferase ABEKA_2685 PF01205 Uncharacterized protein family UPF0029 ABEKA_2686 PF13533 Biotin-lipoyl like ABEKA_2687 PF00664 ABC transporter transmembrane region ABEKA_2687 PF00005 ABC transporter ABEKA_2687 PF03412 Peptidase C39 family ABEKA_2688 PF02321 Outer membrane efflux protein ABEKA_2689 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABEKA_2689 PF00005 ABC transporter ABEKA_2690 PF03968 OstA-like protein ABEKA_2693 PF00571 CBS domain ABEKA_2693 PF01380 SIS domain ABEKA_2694 PF09190 DALR domain ABEKA_2694 PF01406 tRNA synthetases class I (C) catalytic domain ABEKA_2698 PF01545 Cation efflux family ABEKA_2699 PF14834 Glutathione S-transferase, C-terminal domain ABEKA_2699 PF02798 Glutathione S-transferase, N-terminal domain ABEKA_2704 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABEKA_2704 PF00117 Glutamine amidotransferase class-I ABEKA_2705 PF04264 YceI-like domain ABEKA_2708 PF00456 Transketolase, thiamine diphosphate binding domain ABEKA_2708 PF02779 Transketolase, pyrimidine binding domain ABEKA_2708 PF02780 Transketolase, C-terminal domain ABEKA_2711 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABEKA_2711 PF02772 S-adenosylmethionine synthetase, central domain ABEKA_2711 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABEKA_2713 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_2713 PF13359 DDE superfamily endonuclease ABEKA_2716 PF04143 Sulphur transport ABEKA_2720 PF03060 Nitronate monooxygenase ABEKA_2722 PF01207 Dihydrouridine synthase (Dus) ABEKA_2723 PF07759 Protein of unknown function (DUF1615) ABEKA_2725 PF00487 Fatty acid desaturase ABEKA_2726 PF00175 Oxidoreductase NAD-binding domain ABEKA_2726 PF00111 2Fe-2S iron-sulfur cluster binding domain ABEKA_2726 PF00970 Oxidoreductase FAD-binding domain ABEKA_2727 PF00440 Bacterial regulatory proteins, tetR family ABEKA_2730 PF00176 SNF2 family N-terminal domain ABEKA_2730 PF12137 RNA polymerase recycling family C-terminal ABEKA_2730 PF00271 Helicase conserved C-terminal domain ABEKA_2730 PF18337 RapA N-terminal Tudor like domain ABEKA_2730 PF18339 RapA N-terminal Tudor like domain 1 ABEKA_2731 PF00849 RNA pseudouridylate synthase ABEKA_2734 PF03928 Haem-degrading ABEKA_2736 PF00202 Aminotransferase class-III ABEKA_2737 PF02581 Thiamine monophosphate synthase ABEKA_2740 PF01928 CYTH domain ABEKA_2746 PF05193 Peptidase M16 inactive domain ABEKA_2746 PF00675 Insulinase (Peptidase family M16) ABEKA_2747 PF02567 Phenazine biosynthesis-like protein ABEKA_2749 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABEKA_2749 PF00753 Metallo-beta-lactamase superfamily ABEKA_2760 PF00069 Protein kinase domain ABEKA_2760 PF08308 PEGA domain ABEKA_2766 PF13185 GAF domain ABEKA_2766 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_2767 PF00814 Glycoprotease family ABEKA_2768 PF01165 Ribosomal protein S21 ABEKA_2771 PF01435 Peptidase family M48 ABEKA_2772 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABEKA_2772 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABEKA_2774 PF01435 Peptidase family M48 ABEKA_2775 PF00156 Phosphoribosyl transferase domain ABEKA_2777 PF01180 Dihydroorotate dehydrogenase ABEKA_2781 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABEKA_2781 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABEKA_2782 PF00881 Nitroreductase family ABEKA_2784 PF00270 DEAD/DEAH box helicase ABEKA_2784 PF00271 Helicase conserved C-terminal domain ABEKA_2785 PF00313 'Cold-shock' DNA-binding domain ABEKA_2788 PF00140 Sigma-70 factor, region 1.2 ABEKA_2788 PF04542 Sigma-70 region 2 ABEKA_2788 PF04545 Sigma-70, region 4 ABEKA_2789 PF04241 Protein of unknown function (DUF423) ABEKA_2791 PF05690 Thiazole biosynthesis protein ThiG ABEKA_2792 PF02798 Glutathione S-transferase, N-terminal domain ABEKA_2792 PF00043 Glutathione S-transferase, C-terminal domain ABEKA_2793 PF01740 STAS domain ABEKA_2793 PF00916 Sulfate permease family ABEKA_2794 PF02390 Putative methyltransferase ABEKA_2798 PF13193 AMP-binding enzyme C-terminal domain ABEKA_2798 PF00501 AMP-binding enzyme ABEKA_2799 PF00440 Bacterial regulatory proteins, tetR family ABEKA_2799 PF17925 Tetracyclin repressor-like, C-terminal domain ABEKA_2800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2800 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2801 PF01039 Carboxyl transferase domain ABEKA_2802 PF00378 Enoyl-CoA hydratase/isomerase ABEKA_2803 PF18140 Propionyl-coenzyme A carboxylase BT domain ABEKA_2803 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABEKA_2803 PF00364 Biotin-requiring enzyme ABEKA_2803 PF00289 Biotin carboxylase, N-terminal domain ABEKA_2803 PF02785 Biotin carboxylase C-terminal domain ABEKA_2804 PF00682 HMGL-like ABEKA_2805 PF01144 Coenzyme A transferase ABEKA_2806 PF01144 Coenzyme A transferase ABEKA_2807 PF02667 Short chain fatty acid transporter ABEKA_2809 PF01979 Amidohydrolase family ABEKA_2810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABEKA_2810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABEKA_2813 PF10672 S-adenosylmethionine-dependent methyltransferase ABEKA_2813 PF02926 THUMP domain ABEKA_2813 PF01170 Putative RNA methylase family UPF0020 ABEKA_2814 PF02861 Clp amino terminal domain, pathogenicity island component ABEKA_2814 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_2814 PF07724 AAA domain (Cdc48 subfamily) ABEKA_2814 PF17871 AAA lid domain ABEKA_2814 PF10431 C-terminal, D2-small domain, of ClpB protein ABEKA_2816 PF00248 Aldo/keto reductase family ABEKA_2817 PF00027 Cyclic nucleotide-binding domain ABEKA_2817 PF13545 Crp-like helix-turn-helix domain ABEKA_2818 PF02566 OsmC-like protein ABEKA_2819 PF00149 Calcineurin-like phosphoesterase ABEKA_2823 PF00753 Metallo-beta-lactamase superfamily ABEKA_2825 PF04143 Sulphur transport ABEKA_2828 PF13098 Thioredoxin-like domain ABEKA_2829 PF08534 Redoxin ABEKA_2830 PF13098 Thioredoxin-like domain ABEKA_2830 PF02683 Cytochrome C biogenesis protein transmembrane region ABEKA_2830 PF11412 Disulphide bond corrector protein DsbC ABEKA_2831 PF00072 Response regulator receiver domain ABEKA_2831 PF00486 Transcriptional regulatory protein, C terminal ABEKA_2832 PF00512 His Kinase A (phospho-acceptor) domain ABEKA_2832 PF08521 Two-component sensor kinase N-terminal ABEKA_2832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABEKA_2833 PF00520 Ion transport protein ABEKA_2833 PF00027 Cyclic nucleotide-binding domain ABEKA_2835 PF03358 NADPH-dependent FMN reductase ABEKA_2836 PF01758 Sodium Bile acid symporter family ABEKA_2838 PF01022 Bacterial regulatory protein, arsR family ABEKA_2839 PF03960 ArsC family ABEKA_2841 PF13936 Helix-turn-helix domain ABEKA_2841 PF00665 Integrase core domain ABEKA_2842 PF13737 Transposase DDE domain ABEKA_2843 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_2843 PF13185 GAF domain ABEKA_2849 PF11992 Domain of unknown function (DUF3488) ABEKA_2849 PF13559 Domain of unknown function (DUF4129) ABEKA_2849 PF01841 Transglutaminase-like superfamily ABEKA_2851 PF07726 ATPase family associated with various cellular activities (AAA) ABEKA_2851 PF17863 AAA lid domain ABEKA_2852 PF04328 Selenoprotein, putative ABEKA_2853 PF13722 5TM C-terminal transporter carbon starvation CstA ABEKA_2853 PF02554 Carbon starvation protein CstA ABEKA_2854 PF09285 Elongation factor P, C-terminal ABEKA_2854 PF08207 Elongation factor P (EF-P) KOW-like domain ABEKA_2854 PF01132 Elongation factor P (EF-P) OB domain ABEKA_2855 PF04055 Radical SAM superfamily ABEKA_2858 PF01197 Ribosomal protein L31 ABEKA_2859 PF13593 SBF-like CPA transporter family (DUF4137) ABEKA_2860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABEKA_2861 PF07690 Major Facilitator Superfamily ABEKA_2862 PF13654 AAA domain ABEKA_2862 PF05362 Lon protease (S16) C-terminal proteolytic domain ABEKA_2863 PF00462 Glutaredoxin ABEKA_2864 PF00202 Aminotransferase class-III ABEKA_2865 PF03466 LysR substrate binding domain ABEKA_2865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_2866 PF01551 Peptidase family M23 ABEKA_2866 PF01476 LysM domain ABEKA_2867 PF01975 Survival protein SurE ABEKA_2870 PF07943 Penicillin-binding protein 5, C-terminal domain ABEKA_2870 PF00768 D-alanyl-D-alanine carboxypeptidase ABEKA_2871 PF00132 Bacterial transferase hexapeptide (six repeats) ABEKA_2873 PF13737 Transposase DDE domain ABEKA_2875 PF00293 NUDIX domain ABEKA_2877 PF04356 Protein of unknown function (DUF489) ABEKA_2878 PF00206 Lyase ABEKA_2878 PF08328 Adenylosuccinate lyase C-terminal ABEKA_2882 PF08496 Peptidase family S49 N-terminal ABEKA_2882 PF01343 Peptidase family S49 ABEKA_2883 PF00005 ABC transporter ABEKA_2884 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_2885 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_2886 PF12849 PBP superfamily domain ABEKA_2887 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABEKA_2888 PF00202 Aminotransferase class-III ABEKA_2890 PF01569 PAP2 superfamily ABEKA_2891 PF00696 Amino acid kinase family ABEKA_2891 PF01472 PUA domain ABEKA_2892 PF01926 50S ribosome-binding GTPase ABEKA_2892 PF01018 GTP1/OBG ABEKA_2894 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_2896 PF01638 HxlR-like helix-turn-helix ABEKA_2897 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABEKA_2897 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABEKA_2900 PF00892 EamA-like transporter family ABEKA_2902 PF17757 UvrB interaction domain ABEKA_2902 PF12344 Ultra-violet resistance protein B ABEKA_2902 PF02151 UvrB/uvrC motif ABEKA_2902 PF04851 Type III restriction enzyme, res subunit ABEKA_2902 PF00271 Helicase conserved C-terminal domain ABEKA_2909 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABEKA_2911 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABEKA_2911 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_2912 PF04055 Radical SAM superfamily ABEKA_2913 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABEKA_2913 PF02770 Acyl-CoA dehydrogenase, middle domain ABEKA_2913 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABEKA_2913 PF09317 Domain of unknown function (DUF1974) ABEKA_2915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABEKA_2915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABEKA_2916 PF00860 Permease family ABEKA_2917 PF01613 Flavin reductase like domain ABEKA_2918 PF01042 Endoribonuclease L-PSP ABEKA_2919 PF00857 Isochorismatase family ABEKA_2920 PF00296 Luciferase-like monooxygenase ABEKA_2921 PF12697 Alpha/beta hydrolase family ABEKA_2923 PF13180 PDZ domain ABEKA_2924 PF01784 NIF3 (NGG1p interacting factor 3) ABEKA_2925 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABEKA_2925 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABEKA_2930 PF00419 Fimbrial protein ABEKA_2931 PF13953 PapC C-terminal domain ABEKA_2931 PF13954 PapC N-terminal domain ABEKA_2931 PF00577 Outer membrane usher protein ABEKA_2932 PF02753 Pili assembly chaperone PapD, C-terminal domain ABEKA_2932 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABEKA_2933 PF16970 Type-1 fimbrial protein, A ABEKA_2934 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_2942 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ABEKA_2942 PF01113 Dihydrodipicolinate reductase, N-terminus ABEKA_2944 PF01040 UbiA prenyltransferase family ABEKA_2945 PF04345 Chorismate lyase ABEKA_2947 PF00120 Glutamine synthetase, catalytic domain ABEKA_2947 PF03951 Glutamine synthetase, beta-Grasp domain ABEKA_2993 PF00117 Glutamine amidotransferase class-I ABEKA_2994 PF02885 Glycosyl transferase family, helical bundle domain ABEKA_2994 PF00591 Glycosyl transferase family, a/b domain ABEKA_2995 PF00218 Indole-3-glycerol phosphate synthase ABEKA_2997 PF01227 GTP cyclohydrolase I ABEKA_3001 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_3006 PF05675 Protein of unknown function (DUF817) ABEKA_3007 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABEKA_3009 PF17954 Quercetinase C-terminal cupin domain ABEKA_3009 PF02678 Pirin ABEKA_3011 PF05175 Methyltransferase small domain ABEKA_3013 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_3013 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_3015 PF00764 Arginosuccinate synthase ABEKA_3016 PF00360 Phytochrome region ABEKA_3016 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_3016 PF01590 GAF domain ABEKA_3016 PF00563 EAL domain ABEKA_3017 PF01979 Amidohydrolase family ABEKA_3018 PF00929 Exonuclease ABEKA_3023 PF00324 Amino acid permease ABEKA_3031 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_3031 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABEKA_3032 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_3032 PF12911 N-terminal TM domain of oligopeptide transport permease C ABEKA_3033 PF00528 Binding-protein-dependent transport system inner membrane component ABEKA_3034 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABEKA_3035 PF01476 LysM domain ABEKA_3035 PF01464 Transglycosylase SLT domain ABEKA_3035 PF01464 Transglycosylase SLT domain ABEKA_3035 PF01476 LysM domain ABEKA_3036 PF00929 Exonuclease ABEKA_3038 PF00293 NUDIX domain ABEKA_3038 PF09297 NADH pyrophosphatase zinc ribbon domain ABEKA_3039 PF07859 alpha/beta hydrolase fold ABEKA_3040 PF04972 BON domain ABEKA_3041 PF02021 Uncharacterised protein family UPF0102 ABEKA_3042 PF04348 LppC putative lipoprotein ABEKA_3043 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABEKA_3045 PF01494 FAD binding domain ABEKA_3046 PF01494 FAD binding domain ABEKA_3048 PF04070 Domain of unknown function (DUF378) ABEKA_3049 PF05195 Aminopeptidase P, N-terminal domain ABEKA_3049 PF00557 Metallopeptidase family M24 ABEKA_3054 PF07995 Glucose / Sorbosone dehydrogenase ABEKA_3055 PF07729 FCD domain ABEKA_3055 PF00392 Bacterial regulatory proteins, gntR family ABEKA_3056 PF00364 Biotin-requiring enzyme ABEKA_3056 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABEKA_3056 PF00289 Biotin carboxylase, N-terminal domain ABEKA_3056 PF02785 Biotin carboxylase C-terminal domain ABEKA_3059 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABEKA_3060 PF00004 ATPase family associated with various cellular activities (AAA) ABEKA_3060 PF05362 Lon protease (S16) C-terminal proteolytic domain ABEKA_3060 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABEKA_3061 PF01609 Transposase DDE domain ABEKA_3061 PF13006 Insertion element 4 transposase N-terminal ABEKA_3062 PF04389 Peptidase family M28 ABEKA_3063 PF02590 Predicted SPOUT methyltransferase ABEKA_3064 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABEKA_3066 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABEKA_3066 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABEKA_3067 PF04060 Putative Fe-S cluster ABEKA_3068 PF10576 Iron-sulfur binding domain of endonuclease III ABEKA_3068 PF00633 Helix-hairpin-helix motif ABEKA_3068 PF00730 HhH-GPD superfamily base excision DNA repair protein ABEKA_3070 PF05191 Adenylate kinase, active site lid ABEKA_3073 PF03717 Penicillin-binding Protein dimerisation domain ABEKA_3073 PF00905 Penicillin binding protein transpeptidase domain ABEKA_3085 PF00118 TCP-1/cpn60 chaperonin family ABEKA_3086 PF00166 Chaperonin 10 Kd subunit ABEKA_3088 PF00781 Diacylglycerol kinase catalytic domain ABEKA_3089 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ABEKA_3089 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ABEKA_3092 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABEKA_3092 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABEKA_3101 PF14765 Polyketide synthase dehydratase ABEKA_3101 PF08659 KR domain ABEKA_3101 PF00550 Phosphopantetheine attachment site ABEKA_3101 PF00698 Acyl transferase domain ABEKA_3101 PF08240 Alcohol dehydrogenase GroES-like domain ABEKA_3102 PF00085 Thioredoxin ABEKA_3104 PF00009 Elongation factor Tu GTP binding domain ABEKA_3105 PF01507 Phosphoadenosine phosphosulfate reductase family ABEKA_3108 PF01145 SPFH domain / Band 7 family ABEKA_3108 PF15975 Flotillin ABEKA_3109 PF00549 CoA-ligase ABEKA_3109 PF02629 CoA binding domain ABEKA_3110 PF00549 CoA-ligase ABEKA_3110 PF08442 ATP-grasp domain ABEKA_3111 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_3111 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABEKA_3112 PF02817 e3 binding domain ABEKA_3112 PF00364 Biotin-requiring enzyme ABEKA_3112 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABEKA_3113 PF16870 2-oxoglutarate dehydrogenase C-terminal ABEKA_3113 PF02779 Transketolase, pyrimidine binding domain ABEKA_3113 PF00676 Dehydrogenase E1 component ABEKA_3113 PF16078 2-oxoglutarate dehydrogenase N-terminus ABEKA_3115 PF13085 2Fe-2S iron-sulfur cluster binding domain ABEKA_3116 PF02910 Fumarate reductase flavoprotein C-term ABEKA_3116 PF00890 FAD binding domain ABEKA_3117 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABEKA_3118 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABEKA_3120 PF00285 Citrate synthase, C-terminal domain ABEKA_3122 PF02540 NAD synthase ABEKA_3122 PF00795 Carbon-nitrogen hydrolase ABEKA_3125 PF00582 Universal stress protein family ABEKA_3127 PF00999 Sodium/hydrogen exchanger family ABEKA_3129 PF04228 Putative neutral zinc metallopeptidase ABEKA_3130 PF05661 Protein of unknown function (DUF808) ABEKA_3131 PF00579 tRNA synthetases class I (W and Y) ABEKA_3132 PF00152 tRNA synthetases class II (D, K and N) ABEKA_3132 PF01336 OB-fold nucleic acid binding domain ABEKA_3134 PF00156 Phosphoribosyl transferase domain ABEKA_3135 PF00301 Rubredoxin ABEKA_3136 PF18113 Rubredoxin binding C-terminal domain ABEKA_3136 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABEKA_3137 PF00561 alpha/beta hydrolase fold ABEKA_3138 PF03466 LysR substrate binding domain ABEKA_3138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABEKA_3141 PF13090 Polyphosphate kinase C-terminal domain 2 ABEKA_3141 PF17941 Polyphosphate kinase C-terminal domain 1 ABEKA_3141 PF02503 Polyphosphate kinase middle domain ABEKA_3141 PF13089 Polyphosphate kinase N-terminal domain ABEKA_3142 PF00912 Transglycosylase ABEKA_3143 PF01694 Rhomboid family ABEKA_3145 PF00005 ABC transporter ABEKA_3146 PF13472 GDSL-like Lipase/Acylhydrolase family ABEKA_3147 PF00484 Carbonic anhydrase ABEKA_3148 PF00561 alpha/beta hydrolase fold ABEKA_3150 PF07715 TonB-dependent Receptor Plug Domain ABEKA_3150 PF00593 TonB dependent receptor ABEKA_3151 PF01521 Iron-sulphur cluster biosynthesis ABEKA_3151 PF01106 NifU-like domain ABEKA_3154 PF01384 Phosphate transporter family ABEKA_3156 PF02607 B12 binding domain ABEKA_3156 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABEKA_3156 PF00809 Pterin binding enzyme ABEKA_3156 PF02574 Homocysteine S-methyltransferase ABEKA_3156 PF02310 B12 binding domain ABEKA_3157 PF13737 Transposase DDE domain ABEKA_3162 PF13936 Helix-turn-helix domain ABEKA_3162 PF00665 Integrase core domain ABEKA_3163 PF04960 Glutaminase ABEKA_3169 PF00133 tRNA synthetases class I (I, L, M and V) ABEKA_3169 PF08264 Anticodon-binding domain of tRNA ABEKA_3169 PF10458 Valyl tRNA synthetase tRNA binding arm ABEKA_3171 PF04480 Protein of unknown function (DUF559) ABEKA_3174 PF00194 Eukaryotic-type carbonic anhydrase ABEKA_3175 PF04239 Protein of unknown function (DUF421) ABEKA_3176 PF13419 Haloacid dehalogenase-like hydrolase ABEKA_3180 PF01734 Patatin-like phospholipase ABEKA_3182 PF01145 SPFH domain / Band 7 family ABEKA_3183 PF00474 Sodium:solute symporter family ABEKA_3184 PF00348 Polyprenyl synthetase ABEKA_3185 PF04303 PrpF protein ABEKA_3186 PF00324 Amino acid permease ABEKA_3191 PF01507 Phosphoadenosine phosphosulfate reductase family ABEKA_3192 PF06974 Protein of unknown function (DUF1298) ABEKA_3192 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ABEKA_3194 PF00575 S1 RNA binding domain ABEKA_3194 PF10150 Ribonuclease E/G family ABEKA_3195 PF02545 Maf-like protein ABEKA_3196 PF04093 rod shape-determining protein MreD ABEKA_3197 PF04085 rod shape-determining protein MreC ABEKA_3199 PF02686 Glu-tRNAGln amidotransferase C subunit ABEKA_3200 PF01425 Amidase ABEKA_3201 PF02934 GatB/GatE catalytic domain ABEKA_3201 PF02637 GatB domain ABEKA_3203 PF13359 DDE superfamily endonuclease ABEKA_3203 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_3204 PF13359 DDE superfamily endonuclease ABEKA_3204 PF13613 Helix-turn-helix of DDE superfamily endonuclease ABEKA_3205 PF01527 Transposase ABEKA_3206 PF13333 Integrase core domain ABEKA_3206 PF00665 Integrase core domain ABEKA_3206 PF13276 HTH-like domain ABEKA_3210 PF05992 SbmA/BacA-like family ABEKA_3215 PF00563 EAL domain ABEKA_3215 PF12792 CSS motif domain associated with EAL ABEKA_3216 PF03707 Bacterial signalling protein N terminal repeat ABEKA_3216 PF00990 Diguanylate cyclase, GGDEF domain ABEKA_3216 PF00563 EAL domain ABEKA_3221 PF13954 PapC N-terminal domain ABEKA_3221 PF13953 PapC C-terminal domain ABEKA_3221 PF00577 Outer membrane usher protein ABEKA_3224 PF00072 Response regulator receiver domain ABEKA_3230 PF13007 Transposase C of IS166 homeodomain ABEKA_3230 PF13817 IS66 C-terminal element ABEKA_3230 PF03050 Transposase IS66 family ABEKA_3230 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3231 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ABEKA_3231 PF01348 Type II intron maturase ABEKA_3232 PF13817 IS66 C-terminal element ABEKA_3232 PF03050 Transposase IS66 family ABEKA_3232 PF13007 Transposase C of IS166 homeodomain ABEKA_3232 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3235 PF13817 IS66 C-terminal element ABEKA_3235 PF13007 Transposase C of IS166 homeodomain ABEKA_3235 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3235 PF03050 Transposase IS66 family ABEKA_3241 PF04851 Type III restriction enzyme, res subunit ABEKA_3241 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABEKA_3241 PF08463 EcoEI R protein C-terminal ABEKA_3241 PF00271 Helicase conserved C-terminal domain ABEKA_3243 PF12161 HsdM N-terminal domain ABEKA_3243 PF02384 N-6 DNA Methylase ABEKA_3253 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3253 PF13007 Transposase C of IS166 homeodomain ABEKA_3253 PF13817 IS66 C-terminal element ABEKA_3253 PF03050 Transposase IS66 family ABEKA_3256 PF07693 KAP family P-loop domain ABEKA_3257 PF13340 Putative transposase of IS4/5 family (DUF4096) ABEKA_3258 PF00665 Integrase core domain ABEKA_3258 PF13333 Integrase core domain ABEKA_3258 PF13276 HTH-like domain ABEKA_3259 PF01527 Transposase ABEKA_3261 PF03050 Transposase IS66 family ABEKA_3261 PF13817 IS66 C-terminal element ABEKA_3261 PF13007 Transposase C of IS166 homeodomain ABEKA_3261 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3265 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3265 PF13007 Transposase C of IS166 homeodomain ABEKA_3265 PF03050 Transposase IS66 family ABEKA_3265 PF13817 IS66 C-terminal element ABEKA_3266 PF13007 Transposase C of IS166 homeodomain ABEKA_3266 PF03050 Transposase IS66 family ABEKA_3266 PF13817 IS66 C-terminal element ABEKA_3266 PF13005 zinc-finger binding domain of transposase IS66 ABEKA_3268 PF01425 Amidase ABEKA_3282 PF01051 Initiator Replication protein ABEKA_3284 PF00916 Sulfate permease family ABEKA_3284 PF01740 STAS domain ABEKA_3295 PF00582 Universal stress protein family ABEKA_3296 PF00916 Sulfate permease family ABEKA_3296 PF01740 STAS domain ABEKA_3309 PF03389 MobA/MobL family ABEKA_3310 PF01051 Initiator Replication protein ABEKA_3316 PF00216 Bacterial DNA-binding protein ABEKA_3318 PF01051 Initiator Replication protein ABEKA_3322 PF03389 MobA/MobL family ABEKA_3520 PF01051 Initiator Replication protein ABEKA_3526 PF09828 Chromate resistance exported protein ABEKA_3562 PF01051 Initiator Replication protein ABEKA_3565 PF00665 Integrase core domain ABEKA_3565 PF13936 Helix-turn-helix domain ABEKA_3568 PF13006 Insertion element 4 transposase N-terminal ABEKA_3568 PF01609 Transposase DDE domain ABEKA_3573 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system ABEKA_3577 PF03389 MobA/MobL family ABEKA_3580 PF00239 Resolvase, N terminal domain ABEKA_3580 PF02796 Helix-turn-helix domain of resolvase ABEKA_3585 PF01810 LysE type translocator ABEKA_3590 PF01051 Initiator Replication protein ABWEK_A0002 PF13610 DDE domain ABWEK_A0004 PF13610 DDE domain ABWEK_A0005 PF08240 Alcohol dehydrogenase GroES-like domain ABWEK_A0005 PF00107 Zinc-binding dehydrogenase ABWEK_A0006 PF06100 MCRA family ABWEK_A0008 PF13610 DDE domain ABWEK_A0012 PF03050 Transposase IS66 family ABWEK_A0012 PF13817 IS66 C-terminal element ABWEK_A0012 PF13007 Transposase C of IS166 homeodomain ABWEK_A0012 PF13005 zinc-finger binding domain of transposase IS66 ABWEK_A0016 PF13005 zinc-finger binding domain of transposase IS66 ABWEK_A0016 PF13007 Transposase C of IS166 homeodomain ABWEK_A0016 PF13817 IS66 C-terminal element ABWEK_A0016 PF03050 Transposase IS66 family ABWEK_A0017 PF13462 Thioredoxin ABWEK_A0018 PF13737 Transposase DDE domain ABWEK_A0020 PF13007 Transposase C of IS166 homeodomain ABWEK_A0020 PF13817 IS66 C-terminal element ABWEK_A0020 PF03050 Transposase IS66 family ABWEK_A0020 PF13005 zinc-finger binding domain of transposase IS66 ABWEK_A0023 PF00403 Heavy-metal-associated domain ABWEK_A0034 PF13194 Domain of unknown function (DUF4010) ABWEK_A0035 PF00512 His Kinase A (phospho-acceptor) domain ABWEK_A0035 PF00672 HAMP domain ABWEK_A0035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABWEK_A0036 PF00486 Transcriptional regulatory protein, C terminal ABWEK_A0036 PF00072 Response regulator receiver domain ABWEK_A0038 PF00394 Multicopper oxidase ABWEK_A0038 PF07731 Multicopper oxidase ABWEK_A0038 PF07732 Multicopper oxidase ABWEK_A0045 PF13610 DDE domain ABWEK_A0048 PF13610 DDE domain ABWEK_A0049 PF07664 Ferrous iron transport protein B C terminus ABWEK_A0049 PF02421 Ferrous iron transport protein B ABWEK_A0049 PF07670 Nucleoside recognition ABWEK_A0051 PF01545 Cation efflux family ABWEK_A0052 PF13411 MerR HTH family regulatory protein ABWEK_A0054 PF02321 Outer membrane efflux protein ABWEK_A0055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABWEK_A0056 PF00873 AcrB/AcrD/AcrF family ABWEK_A0057 PF01545 Cation efflux family ABWEK_A0061 PF08240 Alcohol dehydrogenase GroES-like domain ABWEK_A0061 PF00107 Zinc-binding dehydrogenase ABWEK_A0062 PF00106 short chain dehydrogenase ABWEK_A0063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABWEK_A0063 PF03466 LysR substrate binding domain ABWEK_A0064 PF08240 Alcohol dehydrogenase GroES-like domain ABWEK_A0064 PF00107 Zinc-binding dehydrogenase ABWEK_A0065 PF14765 Polyketide synthase dehydratase ABWEK_A0065 PF00550 Phosphopantetheine attachment site ABWEK_A0065 PF08659 KR domain ABWEK_A0065 PF02801 Beta-ketoacyl synthase, C-terminal domain ABWEK_A0065 PF08240 Alcohol dehydrogenase GroES-like domain ABWEK_A0065 PF16197 Ketoacyl-synthetase C-terminal extension ABWEK_A0065 PF00698 Acyl transferase domain ABWEK_A0065 PF00109 Beta-ketoacyl synthase, N-terminal domain ABWEK_A0066 PF02583 Metal-sensitive transcriptional repressor ABWEK_A0067 PF00107 Zinc-binding dehydrogenase ABWEK_A0067 PF08240 Alcohol dehydrogenase GroES-like domain ABWEK_A0068 PF00756 Putative esterase ABWEK_A0070 PF00465 Iron-containing alcohol dehydrogenase ABWEK_A0072 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABWEK_A0074 PF16925 Tetracyclin repressor-like, C-terminal domain ABWEK_A0074 PF00440 Bacterial regulatory proteins, tetR family ABWEK_A0075 PF16884 N-terminal domain of oxidoreductase ABWEK_A0075 PF00107 Zinc-binding dehydrogenase ABWEK_A0078 PF13340 Putative transposase of IS4/5 family (DUF4096) ABWEK_A0081 PF04151 Bacterial pre-peptidase C-terminal domain ABWEK_A0084 PF02677 Epoxyqueuosine reductase QueH ABWEK_A0086 PF08267 Cobalamin-independent synthase, N-terminal domain ABWEK_A0086 PF01717 Cobalamin-independent synthase, Catalytic domain ABWEK_A0087 PF01613 Flavin reductase like domain ABWEK_A0088 PF01925 Sulfite exporter TauE/SafE ABWEK_A0090 PF13276 HTH-like domain ABWEK_A0090 PF13333 Integrase core domain ABWEK_A0090 PF00665 Integrase core domain ABWEK_A0093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABWEK_A0093 PF03466 LysR substrate binding domain ABWEK_A0095 PF02525 Flavodoxin-like fold ABWEK_A0096 PF03992 Antibiotic biosynthesis monooxygenase ABWEK_A0100 PF04343 Protein of unknown function, DUF488 ABWEK_A0110 PF17755 UvrA DNA-binding domain ABWEK_A0113 PF13657 HipA N-terminal domain ABWEK_A0113 PF07804 HipA-like C-terminal domain ABWEK_A0116 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABWEK_A0116 PF02378 Phosphotransferase system, EIIC ABWEK_A0117 PF00294 pfkB family carbohydrate kinase ABWEK_A0118 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABWEK_A0118 PF02896 PEP-utilising enzyme, TIM barrel domain ABWEK_A0118 PF00391 PEP-utilising enzyme, mobile domain ABWEK_A0118 PF05524 PEP-utilising enzyme, N-terminal ABWEK_A0118 PF00381 PTS HPr component phosphorylation site ABWEK_A0119 PF01070 FMN-dependent dehydrogenase ABWEK_A0120 PF07729 FCD domain ABWEK_A0120 PF00392 Bacterial regulatory proteins, gntR family ABWEK_A0121 PF02652 L-lactate permease ABWEK_A0123 PF08521 Two-component sensor kinase N-terminal ABWEK_A0123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABWEK_A0123 PF00512 His Kinase A (phospho-acceptor) domain ABWEK_A0126 PF00155 Aminotransferase class I and II ABWEK_A0127 PF06968 Biotin and Thiamin Synthesis associated domain ABWEK_A0127 PF04055 Radical SAM superfamily ABWEK_A0127 PF00202 Aminotransferase class-III ABWEK_A0128 PF12697 Alpha/beta hydrolase family ABWEK_A0128 PF08241 Methyltransferase domain ABWEK_A0129 PF06968 Biotin and Thiamin Synthesis associated domain ABWEK_A0129 PF04055 Radical SAM superfamily ABWEK_A0133 PF13533 Biotin-lipoyl like ABWEK_A0137 PF07715 TonB-dependent Receptor Plug Domain ABWEK_A0137 PF00593 TonB dependent receptor ABWEK_A0142 PF00465 Iron-containing alcohol dehydrogenase ABWEK_A0144 PF00171 Aldehyde dehydrogenase family ABWEK_A0146 PF00593 TonB dependent receptor ABWEK_A0146 PF07715 TonB-dependent Receptor Plug Domain ABWEK_A0149 PF17762 HTH domain found in ParB protein ABWEK_A0149 PF02195 ParB-like nuclease domain ABWEK_A0150 PF13614 AAA domain ABWEK_A0153 PF13340 Putative transposase of IS4/5 family (DUF4096) ABWEK_A0157 PF01527 Transposase ABWEK_A0158 PF00665 Integrase core domain ABWEK_A0158 PF13276 HTH-like domain ABWEK_A0158 PF13333 Integrase core domain ABWEK_A0164 PF01740 STAS domain ABWEK_A0164 PF00916 Sulfate permease family ABWEK_A0165 PF01381 Helix-turn-helix ABWEK_A0166 PF05973 Phage derived protein Gp49-like (DUF891) ABWEK_A0172 PF01051 Initiator Replication protein ABWEK_A0178 PF03741 Integral membrane protein TerC family ABWEK_A0184 PF13173 AAA domain ABWEK_A0184 PF13635 Domain of unknown function (DUF4143) ABWEK_A0196 PF13411 MerR HTH family regulatory protein ABWEK_A0205 PF13276 HTH-like domain ABWEK_A0205 PF13333 Integrase core domain ABWEK_A0205 PF00665 Integrase core domain ABWEK_A0206 PF01527 Transposase ABWEK_A0209 PF00239 Resolvase, N terminal domain ABWEK_A0209 PF02796 Helix-turn-helix domain of resolvase ABWEK_A0213 PF01047 MarR family ABWEK_A0214 PF02566 OsmC-like protein ABWEK_A0218 PF13411 MerR HTH family regulatory protein ABWEK_A0219 PF13358 DDE superfamily endonuclease ABWEK_D0003 PF02705 K+ potassium transporter ABWEK_D0009 PF03389 MobA/MobL family ABWEK_D0011 PF00199 Catalase ABWEK_D0011 PF06628 Catalase-related immune-responsive ABWEK_E0005 PF03389 MobA/MobL family ABWEK_E0008 PF01810 LysE type translocator ABWEK_E0009 PF04820 Tryptophan halogenase ABWEK_F0004 PF03389 MobA/MobL family ABWEK_F0009 PF03956 Lysine exporter LysO ABWEK_H0003 PF03432 Relaxase/Mobilisation nuclease domain ABWEK_H0004 PF05713 Bacterial mobilisation protein (MobC) ABWEK_J0002 PF00199 Catalase ABWEK_J0002 PF06628 Catalase-related immune-responsive ABWEK_J0003 PF00210 Ferritin-like domain ABWEK_J0012 PF03389 MobA/MobL family