locus-tag	class	description
ABVS_0002	COG0183	Belongs to the thiolase family
ABVS_0003	COG1960	acyl-CoA dehydrogenase activity
ABVS_0006	COG0789	Transcriptional regulator
ABVS_0008	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABVS_0009	COG0640	Transcriptional regulator
ABVS_0013	COG3122	Protein conserved in bacteria
ABVS_0014	COG0668	transmembrane transport
ABVS_0015	COG1132	(ABC) transporter
ABVS_0018	COG0509	glycine decarboxylation via glycine cleavage system
ABVS_0020	COG2814	Major facilitator Superfamily
ABVS_0023	COG2801	Transposase and inactivated derivatives
ABVS_0024	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABVS_0026	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ABVS_0027	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABVS_0036	COG1960	acyl-CoA dehydrogenase activity
ABVS_0038	COG1525	nuclease
ABVS_0040	COG1294	oxidase, subunit
ABVS_0041	COG1271	oxidase subunit
ABVS_0045	COG1960	acyl-CoA dehydrogenase activity
ABVS_0046	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABVS_0047	COG2207	Transcriptional regulator
ABVS_0048	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABVS_0049	COG0730	response to heat
ABVS_0050	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABVS_0063	COG1960	acyl-CoA dehydrogenase activity
ABVS_0071	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
ABVS_0074	COG0552	protein localization to endoplasmic reticulum
ABVS_0075	COG0612	Peptidase, M16
ABVS_0080	COG0517	IMP dehydrogenase activity
ABVS_0081	COG0133	tryptophan synthase activity
ABVS_0083	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABVS_0087	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABVS_0098	COG1294	oxidase, subunit
ABVS_0099	COG4890	Cyd operon protein YbgT
ABVS_0101	COG3385	transposase activity
ABVS_0102	COG0772	Belongs to the SEDS family
ABVS_0105	COG0148	phosphopyruvate hydratase activity
ABVS_0111	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABVS_0111	COG1902	pentaerythritol trinitrate reductase activity
ABVS_0114	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ABVS_0115	COG0583	DNA-binding transcription factor activity
ABVS_0127	COG1570	exodeoxyribonuclease VII activity
ABVS_0135	COG0729	surface antigen
ABVS_0136	COG0477	Major facilitator Superfamily
ABVS_0143	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ABVS_0145	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABVS_0146	COG1960	acyl-CoA dehydrogenase activity
ABVS_0150	COG2890	protein-(glutamine-N5) methyltransferase activity
ABVS_0151	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ABVS_0154	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABVS_0159	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ABVS_0160	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ABVS_0161	COG1845	cytochrome c oxidase, subunit III
ABVS_0162	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ABVS_0164	COG0360	Binds together with S18 to 16S ribosomal RNA
ABVS_0167	COG0305	Participates in initiation and elongation during chromosome replication
ABVS_0168	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ABVS_0171	COG1305	Transglutaminase-like
ABVS_0173	COG2308	Evidence 4 Homologs of previously reported genes of
ABVS_0175	COG0069	glutamate synthase activity
ABVS_0179	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ABVS_0180	COG1454	alcohol dehydrogenase
ABVS_0181	COG0824	Thioesterase
ABVS_0182	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABVS_0187	COG0183	Belongs to the thiolase family
ABVS_0188	COG3385	transposase activity
ABVS_0191	COG0583	DNA-binding transcription factor activity
ABVS_0192	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ABVS_0194	COG3135	benzoate transporter
ABVS_0197	COG0589	response to stress
ABVS_0198	COG0589	response to stress
ABVS_0200	COG0308	aminopeptidase N
ABVS_0205	COG1253	flavin adenine dinucleotide binding
ABVS_0209	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ABVS_0210	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ABVS_0216	COG2431	L-lysine efflux transmembrane transporter activity
ABVS_0219	COG0776	regulation of translation
ABVS_0225	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ABVS_0231	COG1309	transcriptional regulator
ABVS_0232	COG0084	hydrolase, TatD family'
ABVS_0236	COG1663	tetraacyldisaccharide 4'-kinase activity
ABVS_0237	COG1132	(ABC) transporter
ABVS_0239	COG0811	peptide transport
ABVS_0240	COG1475	DNA binding
ABVS_0241	COG1192	Involved in chromosome partitioning
ABVS_0243	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ABVS_0244	COG3178	'Phosphotransferase
ABVS_0246	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABVS_0247	COG1923	regulation of RNA biosynthetic process
ABVS_0249	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ABVS_0250	COG0802	atpase or kinase
ABVS_0258	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABVS_0262	COG1643	Atp-dependent helicase
ABVS_0267	COG4122	O-methyltransferase activity
ABVS_0269	COG3634	alkyl hydroperoxide reductase activity
ABVS_0275	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ABVS_0275	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ABVS_0284	COG0204	Acyl-transferase
ABVS_0289	COG0012	GTP binding
ABVS_0290	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABVS_0293	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABVS_0297	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
ABVS_0299	COG0386	Belongs to the glutathione peroxidase family
ABVS_0300	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABVS_0301	COG0436	Aminotransferase
ABVS_0307	COG2351	hydroxyisourate hydrolase activity
ABVS_0312	COG1686	Belongs to the peptidase S11 family
ABVS_0313	COG1252	NADH dehydrogenase
ABVS_0317	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ABVS_0321	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABVS_0324	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABVS_0325	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ABVS_0326	COG0527	aspartate kinase activity
ABVS_0328	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABVS_0333	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ABVS_0334	COG2252	PERMEase
ABVS_0340	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABVS_0341	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ABVS_0343	COG0693	protein deglycase activity
ABVS_0344	COG1960	acyl-CoA dehydrogenase activity
ABVS_0345	COG1301	dicarboxylic acid transport
ABVS_0347	COG3139	Protein of unknown function (DUF1315)
ABVS_0348	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABVS_0349	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABVS_0351	COG0494	nUDIX hydrolase
ABVS_0353	COG0642	Histidine kinase
ABVS_0356	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ABVS_0358	COG1720	tRNA m6t6A37 methyltransferase activity
ABVS_0364	COG0826	peptidase U32
ABVS_0365	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABVS_0366	COG3634	alkyl hydroperoxide reductase activity
ABVS_0370	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABVS_0382	COG3706	GGDEF domain
ABVS_0384	COG1131	(ABC) transporter
ABVS_0385	COG0842	Transport permease protein
ABVS_0388	COG2951	lytic endotransglycosylase activity
ABVS_0393	COG0052	Belongs to the universal ribosomal protein uS2 family
ABVS_0395	COG0436	Aminotransferase
ABVS_0396	COG0534	Mate efflux family protein
ABVS_0401	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ABVS_0404	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABVS_0405	COG0571	ribonuclease III activity
ABVS_0410	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABVS_0414	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABVS_0417	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABVS_0418	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABVS_0421	COG4208	sulfate ABC transporter
ABVS_0422	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ABVS_0423	COG0583	DNA-binding transcription factor activity
ABVS_0427	COG0602	queuosine metabolic process
ABVS_0428	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ABVS_0430	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ABVS_0431	COG2353	YceI-like domain
ABVS_0433	COG0583	DNA-binding transcription factor activity
ABVS_0434	COG1051	belongs to the nudix hydrolase family
ABVS_0434	COG1056	cytidyltransferase-related domain
ABVS_0436	COG0778	Nitroreductase
ABVS_0437	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
ABVS_0440	COG0583	DNA-binding transcription factor activity
ABVS_0444	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABVS_0444	COG0047	phosphoribosylformylglycinamidine synthase activity
ABVS_0446	COG2963	transposase activity
ABVS_0448	COG4372	Transposase
ABVS_0455	COG2255	four-way junction helicase activity
ABVS_0458	COG1473	amidohydrolase
ABVS_0459	COG0824	Thioesterase
ABVS_0463	COG0823	Involved in the tonB-independent uptake of proteins
ABVS_0468	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABVS_0475	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ABVS_0476	COG0628	permease
ABVS_0477	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
ABVS_0478	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ABVS_0479	COG2267	carboxylic ester hydrolase activity
ABVS_0482	COG0658	competence protein
ABVS_0482	COG2333	competence protein COMEC
ABVS_0483	COG1136	(ABC) transporter
ABVS_0487	COG1671	Belongs to the UPF0178 family
ABVS_0492	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABVS_0503	COG1280	lysine exporter protein (LysE YggA)
ABVS_0504	COG1522	sequence-specific DNA binding
ABVS_0506	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ABVS_0509	COG0019	diaminopimelate decarboxylase activity
ABVS_0511	COG1113	amino acid transport
ABVS_0512	COG1115	amino acid carrier protein
ABVS_0521	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ABVS_0522	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ABVS_0523	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABVS_0524	COG1716	ATPase activity
ABVS_0524	COG5001	Diguanylate cyclase
ABVS_0528	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ABVS_0532	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABVS_0535	COG0037	tRNA processing
ABVS_0536	COG0739	heme binding
ABVS_0536	COG0741	lytic transglycosylase activity
ABVS_0536	COG1196	nuclear chromosome segregation
ABVS_0537	COG0501	Belongs to the peptidase M48B family
ABVS_0539	COG2239	Acts as a magnesium transporter
ABVS_0540	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABVS_0544	COG1253	flavin adenine dinucleotide binding
ABVS_0545	COG3293	Transposase
ABVS_0553	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABVS_0555	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABVS_0561	COG0505	Belongs to the CarA family
ABVS_0562	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ABVS_0564	COG1309	transcriptional regulator
ABVS_0565	COG0251	oxidation-reduction process
ABVS_0566	COG0110	maltose O-acetyltransferase activity
ABVS_0570	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABVS_0575	COG0564	pseudouridine synthase activity
ABVS_0577	COG0358	DNA primase activity
ABVS_0578	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ABVS_0580	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ABVS_0583	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABVS_0584	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
ABVS_0595	COG0586	Pfam SNARE associated Golgi protein
ABVS_0601	COG0321	lipoyl(octanoyl) transferase activity
ABVS_0604	COG0531	amino acid
ABVS_0607	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ABVS_0608	COG1648	precorrin-2 dehydrogenase activity
ABVS_0608	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ABVS_0609	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
ABVS_0611	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABVS_0613	COG0261	This protein binds to 23S rRNA in the presence of protein L20
ABVS_0616	COG0671	phosphoesterase, PA-phosphatase related
ABVS_0617	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABVS_0620	COG0393	Putative heavy-metal-binding
ABVS_0621	COG0393	Putative heavy-metal-binding
ABVS_0627	COG2203	Gaf domain
ABVS_0627	COG3706	GGDEF domain
ABVS_0627	COG5001	Diguanylate cyclase
ABVS_0627	COG4251	negative regulation of phosphorylation
ABVS_0631	COG1285	pathogenesis
ABVS_0632	COG4681	YaeQ
ABVS_0633	COG0523	cobalamin synthesis protein
ABVS_0639	COG2814	Major facilitator Superfamily
ABVS_0641	COG1607	acyl-coa hydrolase
ABVS_0644	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABVS_0645	COG2059	Chromate
ABVS_0646	COG1115	amino acid carrier protein
ABVS_0647	COG0786	glutamate:sodium symporter activity
ABVS_0649	COG2814	Major facilitator Superfamily
ABVS_0650	COG1289	transmembrane transporter activity
ABVS_0652	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ABVS_0664	COG2832	Protein of unknown function (DUF454)
ABVS_0669	COG0643	Histidine kinase
ABVS_0669	COG0784	Response regulator, receiver
ABVS_0669	COG2198	Histidine kinase
ABVS_0670	COG0840	transmembrane signaling receptor activity
ABVS_0675	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABVS_0687	COG0489	protein tyrosine kinase activity
ABVS_0689	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABVS_0689	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABVS_0690	COG3385	transposase activity
ABVS_0694	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABVS_0695	COG0004	ammonium transporteR
ABVS_0698	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ABVS_0700	COG2081	HI0933 family
ABVS_0703	COG0668	transmembrane transport
ABVS_0708	COG0531	amino acid
ABVS_0713	COG0583	DNA-binding transcription factor activity
ABVS_0714	COG1278	Cold shock
ABVS_0719	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABVS_0720	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABVS_0721	COG0713	ATP synthesis coupled electron transport
ABVS_0723	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABVS_0726	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ABVS_0730	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABVS_0732	COG2205	protein histidine kinase activity
ABVS_0733	COG0745	RESPONSE REGULATOR receiver
ABVS_0735	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABVS_0735	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ABVS_0737	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABVS_0746	COG2963	transposase activity
ABVS_0748	COG2433	Pfam Transposase IS66
ABVS_0750	COG4372	Transposase
ABVS_0758	COG2223	nitrite transmembrane transporter activity
ABVS_0765	COG4772	TonB-dependent receptor
ABVS_0768	COG3152	Membrane
ABVS_0771	COG0351	phosphomethylpyrimidine kinase
ABVS_0771	COG0352	thiamine-phosphate diphosphorylase activity
ABVS_0771	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABVS_0774	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_0776	COG2824	Alkylphosphonate utilization operon protein PhnA
ABVS_0780	COG0564	pseudouridine synthase activity
ABVS_0787	COG2132	Multicopper oxidase
ABVS_0788	COG0354	folic acid binding
ABVS_0793	COG1902	pentaerythritol trinitrate reductase activity
ABVS_0798	COG1217	gtp-binding protein TYPA
ABVS_0799	COG2233	PERMEase
ABVS_0801	COG0833	amino acid
ABVS_0805	COG0183	Belongs to the thiolase family
ABVS_0808	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABVS_0809	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABVS_0810	COG2207	Transcriptional regulator
ABVS_0811	COG0183	Belongs to the thiolase family
ABVS_0812	COG1024	Enoyl-CoA hydratase
ABVS_0812	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABVS_0816	COG1272	protein, Hemolysin III
ABVS_0817	COG0477	Major facilitator Superfamily
ABVS_0819	COG1408	metallophosphoesterase
ABVS_0820	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABVS_0825	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ABVS_0832	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABVS_0833	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ABVS_0834	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ABVS_0835	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ABVS_0836	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ABVS_0838	COG0625	glutathione transferase activity
ABVS_0839	COG2969	positive regulation of protein catabolic process
ABVS_0850	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ABVS_0851	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ABVS_0853	COG0653	protein targeting
ABVS_0854	COG0450	alkyl hydroperoxide reductase
ABVS_0857	COG0285	dihydrofolate synthase activity
ABVS_0867	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ABVS_0869	COG1704	LemA family
ABVS_0872	COG1862	Preprotein translocase
ABVS_0874	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABVS_0876	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABVS_0879	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABVS_0882	COG2084	Dehydrogenase
ABVS_0883	COG3622	Belongs to the hyi family
ABVS_0891	COG2814	Major facilitator Superfamily
ABVS_0893	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABVS_0895	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABVS_0896	COG2003	Belongs to the UPF0758 family
ABVS_0897	COG3781	membrane
ABVS_0900	COG2350	Protein conserved in bacteria
ABVS_0906	COG1607	acyl-coa hydrolase
ABVS_0914	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABVS_0921	COG1183	phosphatidylcholine synthase activity
ABVS_0922	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ABVS_0930	COG0739	heme binding
ABVS_0930	COG0741	lytic transglycosylase activity
ABVS_0930	COG1196	nuclear chromosome segregation
ABVS_0931	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABVS_0932	COG1702	phosphate starvation-inducible protein PhoH
ABVS_0943	COG1295	ribonuclease BN
ABVS_0944	COG0697	spore germination
ABVS_0947	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABVS_0955	COG0557	exoribonuclease II activity
ABVS_0958	COG0339	signal peptide processing
ABVS_0959	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ABVS_0961	COG0697	spore germination
ABVS_0966	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ABVS_0967	COG1960	acyl-CoA dehydrogenase activity
ABVS_0968	COG2072	flavoprotein involved in K transport
ABVS_0969	COG0203	ribosomal protein L17
ABVS_0970	COG0202	RNA polymerase activity
ABVS_0971	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ABVS_0973	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ABVS_0978	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ABVS_0980	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
ABVS_0981	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
ABVS_0991	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ABVS_0993	COG0089	rRNA binding
ABVS_0994	COG0088	Forms part of the polypeptide exit tunnel
ABVS_0998	COG0626	cystathionine gamma-synthase activity
ABVS_0999	COG0433	COG0433 Predicted ATPase
ABVS_1000	COG1017	nitric oxide dioxygenase activity
ABVS_1000	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABVS_1001	COG1959	2 iron, 2 sulfur cluster binding
ABVS_1003	COG1301	dicarboxylic acid transport
ABVS_1004	COG1946	Acyl-CoA thioesterase
ABVS_1005	COG2937	Belongs to the GPAT DAPAT family
ABVS_1006	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABVS_1007	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ABVS_1008	COG1040	competence protein
ABVS_1009	COG0494	nUDIX hydrolase
ABVS_1011	COG0598	Magnesium transport protein CorA
ABVS_1015	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ABVS_1016	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ABVS_1017	COG1127	ABC transporter
ABVS_1018	COG0513	Belongs to the DEAD box helicase family
ABVS_1023	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABVS_1024	COG0408	coproporphyrinogen oxidase activity
ABVS_1029	COG1960	acyl-CoA dehydrogenase activity
ABVS_1030	COG1278	Cold shock
ABVS_1031	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABVS_1033	COG0534	Mate efflux family protein
ABVS_1035	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABVS_1036	COG0254	rRNA binding
ABVS_1037	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
ABVS_1045	COG0628	permease
ABVS_1047	COG1289	transmembrane transporter activity
ABVS_1048	COG2814	Major facilitator Superfamily
ABVS_1051	COG0277	FAD linked oxidase domain protein
ABVS_1053	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABVS_1054	COG5006	permease, DMT superfamily
ABVS_1060	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ABVS_1061	COG5380	lipid catabolic process
ABVS_1063	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
ABVS_1064	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
ABVS_1067	COG3293	Transposase
ABVS_1070	COG2433	Pfam Transposase IS66
ABVS_1072	COG4372	Transposase
ABVS_1073	COG0335	large ribosomal subunit rRNA binding
ABVS_1075	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABVS_1076	COG0228	four-way junction DNA binding
ABVS_1085	COG0194	GDP metabolic process
ABVS_1086	COG1758	RNA polymerase activity
ABVS_1087	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABVS_1091	COG3307	-O-antigen
ABVS_1094	COG4969	Belongs to the N-Me-Phe pilin family
ABVS_1097	COG1704	LemA family
ABVS_1098	COG0493	'glutamate synthase
ABVS_1099	COG0067	glutamate synthase
ABVS_1099	COG0069	glutamate synthase activity
ABVS_1099	COG0070	glutamate synthase
ABVS_1109	COG3385	transposase activity
ABVS_1110	COG2226	methyltransferase
ABVS_1111	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABVS_1112	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ABVS_1113	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABVS_1118	COG3385	transposase activity
ABVS_1119	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABVS_1122	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABVS_1126	COG0488	(ABC) transporter
ABVS_1128	COG4221	oxidoreductase activity
ABVS_1129	COG3293	Transposase
ABVS_1130	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ABVS_1133	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABVS_1133	COG2111	Na H antiporter
ABVS_1134	COG1006	Multisubunit Na H antiporter MnhC subunit
ABVS_1135	COG0651	ATP synthesis coupled electron transport
ABVS_1136	COG1863	multisubunit Na H antiporter MnhE subunit
ABVS_1137	COG2212	antiporter activity
ABVS_1138	COG1320	monovalent cation:proton antiporter activity
ABVS_1139	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ABVS_1141	COG0195	Participates in both transcription termination and antitermination
ABVS_1142	COG0779	Required for maturation of 30S ribosomal subunits
ABVS_1153	COG0237	dephospho-CoA kinase activity
ABVS_1155	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABVS_1156	COG3123	guanosine phosphorylase activity
ABVS_1158	COG0497	DNA recombination
ABVS_1160	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ABVS_1162	COG1132	(ABC) transporter
ABVS_1164	COG1538	Outer membrane efflux protein
ABVS_1168	COG0494	nUDIX hydrolase
ABVS_1170	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ABVS_1171	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABVS_1173	COG0772	Belongs to the SEDS family
ABVS_1178	COG4974	Belongs to the 'phage' integrase family
ABVS_1179	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABVS_1182	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABVS_1183	COG1686	Belongs to the peptidase S11 family
ABVS_1184	COG2197	response regulator
ABVS_1185	COG4191	Histidine kinase
ABVS_1187	COG3409	Peptidoglycan-binding domain 1 protein
ABVS_1187	COG0793	Belongs to the peptidase S41A family
ABVS_1188	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ABVS_1189	COG0795	lipopolysaccharide-transporting ATPase activity
ABVS_1190	COG0795	lipopolysaccharide-transporting ATPase activity
ABVS_1194	COG0586	Pfam SNARE associated Golgi protein
ABVS_1197	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABVS_1197	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABVS_1199	COG0004	ammonium transporteR
ABVS_1200	COG0347	Belongs to the P(II) protein family
ABVS_1202	COG0606	chelatase, subunit chli
ABVS_1205	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ABVS_1208	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_1210	COG0477	Major facilitator Superfamily
ABVS_1211	COG2860	membrane
ABVS_1213	COG1253	flavin adenine dinucleotide binding
ABVS_1221	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABVS_1222	COG0477	Major facilitator Superfamily
ABVS_1226	COG2814	Major facilitator Superfamily
ABVS_1236	COG0758	DNA mediated transformation
ABVS_1238	COG0697	spore germination
ABVS_1239	COG0386	Belongs to the glutathione peroxidase family
ABVS_1243	COG1012	belongs to the aldehyde dehydrogenase family
ABVS_1246	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
ABVS_1256	COG1121	(ABC) transporter
ABVS_1257	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABVS_1259	COG2837	iron assimilation
ABVS_1266	COG0436	Aminotransferase
ABVS_1267	COG0534	Mate efflux family protein
ABVS_1275	COG3706	GGDEF domain
ABVS_1276	COG3706	GGDEF domain
ABVS_1277	COG1715	Restriction endonuclease
ABVS_1278	COG0519	Catalyzes the synthesis of GMP from XMP
ABVS_1278	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABVS_1279	COG0586	Pfam SNARE associated Golgi protein
ABVS_1282	COG1192	Involved in chromosome partitioning
ABVS_1284	COG0271	Belongs to the BolA IbaG family
ABVS_1291	COG3756	Protein conserved in bacteria
ABVS_1293	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABVS_1296	COG3293	Transposase
ABVS_1299	COG0753	catalase activity
ABVS_1300	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABVS_1306	COG3756	Protein conserved in bacteria
ABVS_1308	COG2801	Transposase and inactivated derivatives
ABVS_1309	COG0737	Belongs to the 5'-nucleotidase family
ABVS_1313	COG3540	Alkaline phosphatase
ABVS_1319	COG3293	Transposase
ABVS_1323	COG2274	protein secretion by the type I secretion system
ABVS_1329	COG2801	Transposase and inactivated derivatives
ABVS_1331	COG3550	peptidyl-serine autophosphorylation
ABVS_1332	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ABVS_1339	COG4628	conserved protein (DUF2132)
ABVS_1341	COG0281	malic enzyme
ABVS_1345	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ABVS_1347	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ABVS_1348	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABVS_1350	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ABVS_1356	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABVS_1360	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABVS_1363	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ABVS_1366	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABVS_1369	COG0438	transferase activity, transferring glycosyl groups
ABVS_1370	COG1442	glycosyl transferase family 8
ABVS_1370	COG1216	Glycosyl transferase, family 2
ABVS_1371	COG0463	Glycosyl transferase, family 2
ABVS_1376	COG1091	dTDP-4-dehydrorhamnose reductase activity
ABVS_1378	COG1596	polysaccharide export
ABVS_1386	COG1194	a g-specific adenine glycosylase
ABVS_1387	COG0739	heme binding
ABVS_1389	COG2818	Glycosylase
ABVS_1390	COG1064	alcohol dehydrogenase
ABVS_1402	COG2233	PERMEase
ABVS_1407	COG0129	dihydroxy-acid dehydratase activity
ABVS_1408	COG0675	Transposase, IS605 OrfB family
ABVS_1415	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ABVS_1416	COG0428	transporter
ABVS_1417	COG0675	Transposase, IS605 OrfB family
ABVS_1420	COG0733	neurotransmitter:sodium symporter activity
ABVS_1421	COG1012	belongs to the aldehyde dehydrogenase family
ABVS_1423	COG0693	protein deglycase activity
ABVS_1424	COG0666	response to abiotic stimulus
ABVS_1428	COG2814	Major facilitator Superfamily
ABVS_1429	COG2814	Major facilitator Superfamily
ABVS_1435	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABVS_1437	COG0657	acetylesterase activity
ABVS_1449	COG0488	(ABC) transporter
ABVS_1450	COG1063	alcohol dehydrogenase
ABVS_1451	COG0187	DNA topoisomerase II activity
ABVS_1453	COG0592	DNA-directed DNA polymerase activity
ABVS_1454	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ABVS_1457	COG0594	ribonuclease P activity
ABVS_1458	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ABVS_1459	COG0706	membrane insertase activity
ABVS_1461	COG2814	Major facilitator Superfamily
ABVS_1465	COG0402	S-adenosylhomocysteine deaminase activity
ABVS_1467	COG0861	Integral membrane protein TerC family
ABVS_1469	COG2388	GCN5-related N-acetyl-transferase
ABVS_1474	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ABVS_1478	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ABVS_1479	COG2951	lytic endotransglycosylase activity
ABVS_1480	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ABVS_1481	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ABVS_1488	COG2133	pyrroloquinoline quinone binding
ABVS_1491	COG1047	Peptidyl-prolyl cis-trans
ABVS_1492	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ABVS_1493	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ABVS_1494	COG0196	riboflavin kinase activity
ABVS_1497	COG1309	transcriptional regulator
ABVS_1498	COG1116	anion transmembrane transporter activity
ABVS_1499	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABVS_1500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABVS_1501	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABVS_1502	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABVS_1503	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ABVS_1503	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
ABVS_1508	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_1509	COG0546	phosphoglycolate phosphatase activity
ABVS_1510	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ABVS_1511	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABVS_1513	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
ABVS_1516	COG3023	N-Acetylmuramoyl-L-alanine amidase
ABVS_1517	COG0728	peptidoglycan biosynthetic process
ABVS_1518	COG5487	UPF0391 membrane protein
ABVS_1519	COG2983	Belongs to the UPF0260 family
ABVS_1520	COG3300	MHYT domain
ABVS_1520	COG5001	Diguanylate cyclase
ABVS_1522	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABVS_1523	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
ABVS_1525	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABVS_1526	COG2814	Major facilitator Superfamily
ABVS_1527	COG1335	isochorismatase
ABVS_1528	COG0385	Bile acid
ABVS_1536	COG3385	transposase activity
ABVS_1538	COG0753	catalase activity
ABVS_1546	COG2733	membrane
ABVS_1549	COG2918	glutathione biosynthetic process
ABVS_1550	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ABVS_1552	COG3150	esterase
ABVS_1562	COG1247	-acetyltransferase
ABVS_1568	COG3706	GGDEF domain
ABVS_1574	COG0708	Exodeoxyribonuclease III
ABVS_1575	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ABVS_1576	COG1278	Cold shock
ABVS_1579	COG2132	Multicopper oxidase
ABVS_1582	COG0189	ligase activity
ABVS_1586	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ABVS_1588	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ABVS_1590	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABVS_1595	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABVS_1596	COG2119	membrane
ABVS_1598	COG0426	domain, Protein
ABVS_1598	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABVS_1603	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABVS_1608	COG1902	pentaerythritol trinitrate reductase activity
ABVS_1609	COG1519	Transferase
ABVS_1610	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABVS_1611	COG0668	transmembrane transport
ABVS_1612	COG3152	Membrane
ABVS_1613	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABVS_1616	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABVS_1617	COG0431	NADPH-dependent FMN reductase
ABVS_1620	COG0784	Response regulator, receiver
ABVS_1620	COG2205	protein histidine kinase activity
ABVS_1621	COG3162	membrane
ABVS_1622	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABVS_1625	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABVS_1629	COG3706	GGDEF domain
ABVS_1633	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABVS_1633	COG0352	thiamine-phosphate diphosphorylase activity
ABVS_1633	COG0351	phosphomethylpyrimidine kinase
ABVS_1635	COG2814	Major facilitator Superfamily
ABVS_1641	COG4372	Transposase
ABVS_1652	COG4372	Transposase
ABVS_1661	COG4372	Transposase
ABVS_1674	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ABVS_1679	COG3158	transport of potassium into the cell
ABVS_1686	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABVS_1689	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_1694	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ABVS_1708	COG1024	Enoyl-CoA hydratase
ABVS_1708	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABVS_1714	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABVS_1717	COG3275	phosphorelay sensor kinase activity
ABVS_1719	COG0181	hydroxymethylbilane synthase activity
ABVS_1729	COG0546	phosphoglycolate phosphatase activity
ABVS_1735	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ABVS_1740	COG0081	regulation of translation
ABVS_1741	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ABVS_1742	COG0222	ribosome binding
ABVS_1743	COG0085	RNA polymerase activity
ABVS_1744	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ABVS_1748	COG2056	Na+-H+ antiporter family
ABVS_1749	COG3047	cAMP biosynthetic process
ABVS_1751	COG0326	Molecular chaperone. Has ATPase activity
ABVS_1758	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ABVS_1759	COG0427	acetyl-CoA hydrolase
ABVS_1766	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABVS_1772	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ABVS_1773	COG1074	ATP-dependent DNA helicase activity
ABVS_1774	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABVS_1775	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ABVS_1776	COG1185	polyribonucleotide nucleotidyltransferase activity
ABVS_1777	COG2841	Protein conserved in bacteria
ABVS_1778	COG0789	Transcriptional regulator
ABVS_1780	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ABVS_1781	COG0475	glutathione-regulated potassium exporter activity
ABVS_1781	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABVS_1782	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABVS_1787	COG4535	Mg2 and Co2 transporter CorC
ABVS_1788	COG0425	Belongs to the sulfur carrier protein TusA family
ABVS_1789	COG0644	oxidoreductase
ABVS_1789	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
ABVS_1791	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABVS_1794	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABVS_1796	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ABVS_1803	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABVS_1810	COG0751	glycine-tRNA ligase activity
ABVS_1814	COG0471	metal ion transport
ABVS_1816	COG1983	PspC domain protein
ABVS_1821	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_1822	COG1530	ribonuclease E activity
ABVS_1823	COG0564	pseudouridine synthase activity
ABVS_1824	COG0546	phosphoglycolate phosphatase activity
ABVS_1825	COG3971	2-oxopent-4-enoate hydratase activity
ABVS_1826	COG4569	acetaldehyde dehydrogenase (acetylating) activity
ABVS_1833	COG0583	DNA-binding transcription factor activity
ABVS_1834	COG4638	Rieske (2fe-2S)
ABVS_1837	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_1839	COG3384	dioxygenase
ABVS_1840	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABVS_1842	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_1847	COG3011	Protein conserved in bacteria
ABVS_1848	COG0753	catalase activity
ABVS_1852	COG4372	Transposase
ABVS_1860	COG0583	DNA-binding transcription factor activity
ABVS_1862	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ABVS_1865	COG0473	3-isopropylmalate dehydrogenase activity
ABVS_1870	COG4372	Transposase
ABVS_1880	COG1560	Kdo2-lipid A biosynthetic process
ABVS_1881	COG0488	(ABC) transporter
ABVS_1882	COG2900	Belongs to the SlyX family
ABVS_1888	COG1929	Belongs to the glycerate kinase type-1 family
ABVS_1889	COG0210	DNA helicase
ABVS_1894	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABVS_1894	COG4651	solute:proton antiporter activity
ABVS_1899	COG0788	formyltetrahydrofolate deformylase activity
ABVS_1921	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ABVS_1923	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABVS_1923	COG2813	Specifically methylates the guanine in position
ABVS_1924	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABVS_1925	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABVS_1927	COG4774	siderophore transport
ABVS_1928	COG4771	TonB-dependent receptor
ABVS_1930	COG0740	serine-type endopeptidase activity
ABVS_1933	COG3385	transposase activity
ABVS_1934	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ABVS_1934	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ABVS_1938	COG0280	phosphate acetyltransferase
ABVS_1938	COG0857	belongs to the CobB CobQ family
ABVS_1939	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABVS_1943	COG0596	Alpha beta hydrolase
ABVS_1943	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABVS_1943	COG2226	methyltransferase
ABVS_1946	COG0793	Belongs to the peptidase S41A family
ABVS_1958	COG1968	undecaprenyl-diphosphatase activity
ABVS_1960	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ABVS_1961	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ABVS_1963	COG2205	protein histidine kinase activity
ABVS_1964	COG0745	RESPONSE REGULATOR receiver
ABVS_1967	COG0174	glutamine synthetase
ABVS_1973	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ABVS_1981	COG1401	restriction endodeoxyribonuclease activity
ABVS_1983	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ABVS_1986	COG0084	hydrolase, TatD family'
ABVS_1992	COG1162	GTPase activity
ABVS_1993	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ABVS_1995	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABVS_1997	COG1538	Outer membrane efflux protein
ABVS_1998	COG0577	efflux transmembrane transporter activity
ABVS_1998	COG1136	(ABC) transporter
ABVS_1999	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABVS_2005	COG0028	Belongs to the TPP enzyme family
ABVS_2006	COG0440	acetolactate synthase activity
ABVS_2007	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
ABVS_2013	COG2975	iron-sulfur cluster assembly
ABVS_2017	COG1426	Protein conserved in bacteria
ABVS_2021	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABVS_2024	COG0300	oxidoreductase activity
ABVS_2025	COG3956	TIGRFAM MazG family protein
ABVS_2026	COG0617	tRNA 3'-terminal CCA addition
ABVS_2027	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ABVS_2030	COG1660	Displays ATPase and GTPase activities
ABVS_2031	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABVS_2033	COG2205	protein histidine kinase activity
ABVS_2034	COG0675	Transposase, IS605 OrfB family
ABVS_2035	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
ABVS_2046	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ABVS_2054	COG1960	acyl-CoA dehydrogenase activity
ABVS_2055	COG1960	acyl-CoA dehydrogenase activity
ABVS_2057	COG2205	protein histidine kinase activity
ABVS_2058	COG0745	RESPONSE REGULATOR receiver
ABVS_2060	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ABVS_2063	COG2096	Adenosyltransferase
ABVS_2064	COG4206	TonB-dependent receptor
ABVS_2067	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_2071	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ABVS_2072	COG3385	transposase activity
ABVS_2075	COG0625	glutathione transferase activity
ABVS_2077	COG1238	metal cluster binding
ABVS_2084	COG0072	phenylalanine-tRNA ligase activity
ABVS_2089	COG0248	Ppx GppA phosphatase
ABVS_2091	COG0037	tRNA processing
ABVS_2100	COG1764	response to oxidative stress
ABVS_2101	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABVS_2114	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ABVS_2115	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ABVS_2125	COG0494	nUDIX hydrolase
ABVS_2127	COG1214	PFAM Peptidase M22, glycoprotease
ABVS_2128	COG1968	undecaprenyl-diphosphatase activity
ABVS_2132	COG4269	membrane
ABVS_2135	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABVS_2137	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABVS_2141	COG2814	Major facilitator Superfamily
ABVS_2142	COG1012	belongs to the aldehyde dehydrogenase family
ABVS_2142	COG2030	dehydratase
ABVS_2143	COG3396	Phenylacetate-CoA oxygenase
ABVS_2144	COG3460	Phenylacetate-CoA oxygenase
ABVS_2145	COG3396	Phenylacetate-CoA oxygenase
ABVS_2146	COG2151	metal-sulfur cluster biosynthetic enzyme
ABVS_2147	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABVS_2148	COG1024	Enoyl-CoA hydratase
ABVS_2149	COG1024	Enoyl-CoA hydratase
ABVS_2150	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABVS_2151	COG0183	Belongs to the thiolase family
ABVS_2152	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ABVS_2153	COG3327	negative regulation of DNA-templated transcription, initiation
ABVS_2155	COG4106	trans-aconitate 2-methyltransferase activity
ABVS_2157	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABVS_2162	COG0730	response to heat
ABVS_2164	COG1196	nuclear chromosome segregation
ABVS_2166	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ABVS_2168	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABVS_2169	COG2193	ferroxidase activity
ABVS_2174	COG4771	TonB-dependent receptor
ABVS_2179	COG0339	signal peptide processing
ABVS_2184	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ABVS_2185	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ABVS_2188	COG0009	L-threonylcarbamoyladenylate synthase
ABVS_2189	COG3101	peptidyl-lysine hydroxylation
ABVS_2190	COG1399	metal-binding, possibly nucleic acid-binding protein
ABVS_2192	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABVS_2193	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_2194	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABVS_2195	COG1652	LysM domain
ABVS_2199	COG0251	oxidation-reduction process
ABVS_2200	COG1113	amino acid transport
ABVS_2201	COG1981	membrane
ABVS_2204	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ABVS_2207	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ABVS_2209	COG0456	acetyltransferase
ABVS_2211	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ABVS_2212	COG0492	ferredoxin-NADP+ reductase activity
ABVS_2213	COG0531	amino acid
ABVS_2213	COG1674	ftsk spoiiie
ABVS_2219	COG0204	Acyl-transferase
ABVS_2220	COG2885	chlorophyll binding
ABVS_2221	COG0210	DNA helicase
ABVS_2222	COG0756	dUTP diphosphatase activity
ABVS_2223	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABVS_2224	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ABVS_2225	COG0121	glutamine amidotransferase
ABVS_2229	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABVS_2230	COG0735	belongs to the Fur family
ABVS_2233	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ABVS_2236	COG0420	3'-5' exonuclease activity
ABVS_2240	COG1090	epimerase
ABVS_2241	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABVS_2243	COG2050	protein possibly involved in aromatic compounds catabolism
ABVS_2244	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ABVS_2246	COG0582	viral genome integration into host DNA
ABVS_2257	COG0210	DNA helicase
ABVS_2258	COG2189	Belongs to the N(4) N(6)-methyltransferase family
ABVS_2261	COG3177	Filamentation induced by cAMP protein fic
ABVS_2265	COG3293	Transposase
ABVS_2272	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABVS_2274	COG1136	(ABC) transporter
ABVS_2275	COG0783	Belongs to the Dps family
ABVS_2281	COG0500	methyltransferase
ABVS_2283	COG2223	nitrite transmembrane transporter activity
ABVS_2284	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
ABVS_2288	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
ABVS_2294	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABVS_2296	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABVS_2297	COG1077	Cell shape determining protein MreB Mrl
ABVS_2298	COG1792	Involved in formation and maintenance of cell shape
ABVS_2299	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ABVS_2300	COG0424	maF-like protein
ABVS_2304	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABVS_2310	COG1113	amino acid transport
ABVS_2311	COG2828	Protein conserved in bacteria
ABVS_2313	COG0142	geranyltranstransferase activity
ABVS_2314	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABVS_2317	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABVS_2323	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABVS_2324	COG2323	membrane
ABVS_2327	COG2852	Protein conserved in bacteria
ABVS_2331	COG0525	valine-tRNA ligase activity
ABVS_2333	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_2335	COG2066	Belongs to the glutaminase family
ABVS_2336	COG2376	Dihydroxyacetone kinase
ABVS_2339	COG0306	phosphate transporter
ABVS_2343	COG4771	TonB-dependent receptor
ABVS_2348	COG4181	ATPase activity
ABVS_2349	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ABVS_2351	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABVS_2354	COG0583	DNA-binding transcription factor activity
ABVS_2355	COG2267	carboxylic ester hydrolase activity
ABVS_2356	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABVS_2357	COG1773	rubredoxin
ABVS_2359	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABVS_2363	COG2354	Protein conserved in bacteria
ABVS_2364	COG2321	neutral zinc metallopeptidase
ABVS_2368	COG0589	response to stress
ABVS_2376	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ABVS_2377	COG1053	succinate dehydrogenase
ABVS_2378	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ABVS_2382	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABVS_2384	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ABVS_2385	COG2268	Band 7 protein
ABVS_2392	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABVS_2392	COG0604	alcohol dehydrogenase
ABVS_2392	COG4221	oxidoreductase activity
ABVS_2392	COG3321	synthase
ABVS_2397	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ABVS_2401	COG1597	lipid kinase activity
ABVS_2414	COG0742	ribosomal rna small subunit methyltransferase
ABVS_2415	COG0768	penicillin binding
ABVS_2420	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABVS_2421	COG2878	Part of a membrane complex involved in electron transport
ABVS_2422	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABVS_2424	COG3384	dioxygenase
ABVS_2426	COG2234	aminopeptidase activity
ABVS_2428	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ABVS_2434	COG1802	Transcriptional regulator
ABVS_2440	COG0006	proline dipeptidase activity
ABVS_2441	COG2155	Conserved Protein
ABVS_2443	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABVS_2444	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABVS_2447	COG3107	peptidoglycan biosynthetic process
ABVS_2450	COG0657	acetylesterase activity
ABVS_2454	COG0741	lytic transglycosylase activity
ABVS_2454	COG1388	LysM domain
ABVS_2455	COG4166	transmembrane transport
ABVS_2456	COG4174	ABC transporter (Permease)
ABVS_2457	COG4239	(ABC) transporter, permease
ABVS_2465	COG0833	amino acid
ABVS_2471	COG0418	dihydroorotase activity
ABVS_2472	COG3706	GGDEF domain
ABVS_2472	COG5001	Diguanylate cyclase
ABVS_2472	COG2203	Gaf domain
ABVS_2472	COG4251	negative regulation of phosphorylation
ABVS_2476	COG1902	pentaerythritol trinitrate reductase activity
ABVS_2476	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABVS_2480	COG1741	Belongs to the pirin family
ABVS_2483	COG3739	integral membrane protein
ABVS_2486	COG3706	GGDEF domain
ABVS_2490	COG0302	gtp cyclohydrolase
ABVS_2493	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABVS_2494	COG0512	Glutamine amidotransferase of anthranilate synthase
ABVS_2533	COG0174	glutamine synthetase
ABVS_2536	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ABVS_2544	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABVS_2545	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABVS_2546	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABVS_2548	COG0596	Alpha beta hydrolase
ABVS_2549	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABVS_2550	COG1335	isochorismatase
ABVS_2551	COG0251	oxidation-reduction process
ABVS_2552	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABVS_2553	COG2233	PERMEase
ABVS_2554	COG2084	Dehydrogenase
ABVS_2557	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABVS_2558	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABVS_2560	COG2175	clavaminate synthase activity
ABVS_2566	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_2567	COG0556	nucleotide-excision repair
ABVS_2571	COG1733	regulation of RNA biosynthetic process
ABVS_2573	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ABVS_2575	COG0671	phosphoesterase, PA-phosphatase related
ABVS_2577	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABVS_2578	COG0076	glutamate decarboxylase activity
ABVS_2579	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ABVS_2580	COG0573	inorganic phosphate transmembrane transporter activity
ABVS_2582	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ABVS_2583	COG0616	signal peptide processing
ABVS_2589	COG0482	sulfurtransferase activity
ABVS_2592	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ABVS_2593	COG1686	Belongs to the peptidase S11 family
ABVS_2596	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ABVS_2598	COG0583	DNA-binding transcription factor activity
ABVS_2599	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABVS_2600	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ABVS_2601	COG1067	ATP-dependent peptidase activity
ABVS_2605	COG0254	rRNA binding
ABVS_2609	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ABVS_2610	COG1966	Carbon starvation protein
ABVS_2611	COG2879	small protein
ABVS_2612	COG0714	Associated with various cellular activities
ABVS_2628	COG4626	Terminase
ABVS_2628	COG1802	Transcriptional regulator
ABVS_2633	COG2199	diguanylate cyclase activity
ABVS_2633	COG2203	Gaf domain
ABVS_2636	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_2639	COG0640	Transcriptional regulator
ABVS_2641	COG0798	PFAM Bile acid sodium symporter
ABVS_2642	COG0431	NADPH-dependent FMN reductase
ABVS_2643	COG2072	flavoprotein involved in K transport
ABVS_2644	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABVS_2645	COG0642	Histidine kinase
ABVS_2647	COG4232	protein-disulfide reductase activity
ABVS_2648	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABVS_2651	COG0640	Transcriptional regulator
ABVS_2659	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABVS_2660	COG1765	OsmC-like protein
ABVS_2662	COG0667	Aldo Keto reductase
ABVS_2668	COG0540	Belongs to the ATCase OTCase family
ABVS_2671	COG2031	fatty acid transporter
ABVS_2672	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABVS_2675	COG4770	biotin carboxylase activity
ABVS_2676	COG1024	Enoyl-CoA hydratase
ABVS_2677	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABVS_2678	COG1960	acyl-CoA dehydrogenase activity
ABVS_2679	COG1309	transcriptional regulator
ABVS_2680	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_2684	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABVS_2685	COG0659	secondary active sulfate transmembrane transporter activity
ABVS_2686	COG0625	glutathione transferase activity
ABVS_2689	COG2363	Small membrane protein
ABVS_2693	COG1278	Cold shock
ABVS_2694	COG0513	Belongs to the DEAD box helicase family
ABVS_2696	COG0778	Nitroreductase
ABVS_2701	COG0167	dihydroorotate dehydrogenase activity
ABVS_2704	COG0501	Belongs to the peptidase M48B family
ABVS_2707	COG4783	chaperone-mediated protein folding
ABVS_2712	COG2203	Gaf domain
ABVS_2712	COG2199	diguanylate cyclase activity
ABVS_2732	COG0612	Peptidase, M16
ABVS_2736	COG3025	triphosphatase activity
ABVS_2739	COG0352	thiamine-phosphate diphosphorylase activity
ABVS_2742	COG2801	Transposase and inactivated derivatives
ABVS_2743	COG2801	Transposase and inactivated derivatives
ABVS_2750	COG1309	transcriptional regulator
ABVS_2761	COG5377	YqaJ viral recombinase family
ABVS_2786	COG5410	chromosome segregation
ABVS_2825	COG2391	methyltransferase activity
ABVS_2827	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ABVS_2829	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ABVS_2831	COG3385	transposase activity
ABVS_2834	COG0505	Belongs to the CarA family
ABVS_2835	COG0625	glutathione transferase activity
ABVS_2841	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ABVS_2841	COG0517	IMP dehydrogenase activity
ABVS_2842	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ABVS_2844	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ABVS_2845	COG1137	ATPase activity
ABVS_2852	COG4122	O-methyltransferase activity
ABVS_2854	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ABVS_2863	COG2011	ABC-type metal ion transport system permease component
ABVS_2864	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABVS_2865	COG1464	Belongs to the NlpA lipoprotein family
ABVS_2866	COG3293	Transposase
ABVS_2870	COG0138	bifunctional purine biosynthesis protein purh
ABVS_2871	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ABVS_2879	COG2814	Major facilitator Superfamily
ABVS_2880	COG2814	Major facilitator Superfamily
ABVS_2883	COG3852	Histidine kinase
ABVS_2885	COG0528	UMP kinase activity
ABVS_2887	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ABVS_2888	COG0575	Belongs to the CDS family
ABVS_2891	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABVS_2895	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABVS_2897	COG2137	regulation of response to DNA damage stimulus
ABVS_2898	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ABVS_2899	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ABVS_2900	COG1011	Hydrolase
ABVS_2904	COG0268	Binds directly to 16S ribosomal RNA
ABVS_2905	COG0702	epimerase
ABVS_2906	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABVS_2908	COG2197	response regulator
ABVS_2913	COG4585	Histidine kinase
ABVS_2915	COG2850	peptidyl-arginine hydroxylation
ABVS_2916	COG0424	maF-like protein
ABVS_2921	COG0697	spore germination
ABVS_2922	COG0778	Nitroreductase
ABVS_2929	COG3781	membrane
ABVS_2935	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABVS_2936	COG1027	Aspartate ammonia-lyase
ABVS_2938	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ABVS_2944	COG0316	Belongs to the HesB IscA family
ABVS_2945	COG0822	iron-sulfur transferase activity
ABVS_2950	COG0776	regulation of translation
ABVS_2951	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABVS_2955	COG1585	Membrane protein implicated in regulation of membrane protease activity
ABVS_2957	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABVS_2961	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABVS_2962	COG0569	domain protein
ABVS_2963	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABVS_2964	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ABVS_2968	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ABVS_2969	COG0542	response to heat
ABVS_2976	COG0372	Belongs to the citrate synthase family
ABVS_2989	COG0753	catalase activity
ABVS_2990	COG2814	Major facilitator Superfamily
ABVS_2992	COG3706	GGDEF domain
ABVS_2993	COG2199	diguanylate cyclase activity
ABVS_2995	COG0439	Biotin carboxylase
ABVS_2997	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
ABVS_3006	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ABVS_3071	COG0582	viral genome integration into host DNA
ABVS_3072	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABVS_3080	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABVS_3086	COG0596	Alpha beta hydrolase
ABVS_3090	COG2801	Transposase and inactivated derivatives
ABVS_3096	COG0642	Histidine kinase
ABVS_3097	COG0745	RESPONSE REGULATOR receiver
ABVS_3098	COG2194	sulfuric ester hydrolase activity
ABVS_3102	COG1079	Belongs to the binding-protein-dependent transport system permease family
ABVS_3104	COG3845	ABC transporter
ABVS_3107	COG0583	DNA-binding transcription factor activity
ABVS_3108	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABVS_3109	COG4266	Belongs to the allantoicase family
ABVS_3112	COG2233	PERMEase
ABVS_3113	COG2351	hydroxyisourate hydrolase activity
ABVS_3119	COG1012	belongs to the aldehyde dehydrogenase family
ABVS_3120	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABVS_3122	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABVS_3125	COG3385	transposase activity
ABVS_3126	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_3129	COG1024	Enoyl-CoA hydratase
ABVS_3130	COG1960	acyl-CoA dehydrogenase activity
ABVS_3131	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABVS_3134	COG0583	DNA-binding transcription factor activity
ABVS_3136	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_3138	COG2814	Major facilitator Superfamily
ABVS_3139	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABVS_3140	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_3143	COG1960	acyl-CoA dehydrogenase activity
ABVS_3145	COG1024	Enoyl-CoA hydratase
ABVS_3146	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABVS_3147	COG0235	Class ii aldolase
ABVS_3149	COG0183	Belongs to the thiolase family
ABVS_3150	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABVS_3151	COG1024	Enoyl-CoA hydratase
ABVS_3152	COG2814	Major facilitator Superfamily
ABVS_3154	COG2814	Major facilitator Superfamily
ABVS_3155	COG5001	Diguanylate cyclase
ABVS_3156	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABVS_3157	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABVS_3158	COG2814	Major facilitator Superfamily
ABVS_3159	COG1960	acyl-CoA dehydrogenase activity
ABVS_3160	COG1960	acyl-CoA dehydrogenase activity
ABVS_3162	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
ABVS_3162	COG0644	oxidoreductase
ABVS_3163	COG1944	ATP diphosphatase activity
ABVS_3168	COG1309	transcriptional regulator
ABVS_3169	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABVS_3172	COG0583	DNA-binding transcription factor activity
ABVS_3175	COG0515	serine threonine protein kinase
ABVS_3176	COG2116	formate transmembrane transporter activity
ABVS_3177	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
ABVS_3179	COG3293	Transposase
ABVS_3180	COG2223	nitrite transmembrane transporter activity
ABVS_3181	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ABVS_3182	COG4149	molybdate abc transporter
ABVS_3183	COG0725	ABC transporter, periplasmic molybdate-binding protein
ABVS_3184	COG0303	'Molybdopterin
ABVS_3185	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABVS_3185	COG0315	cyclic pyranopterin monophosphate synthase activity
ABVS_3186	COG0314	molybdopterin synthase activity
ABVS_3188	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABVS_3190	COG0243	molybdopterin cofactor binding
ABVS_3191	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABVS_3192	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABVS_3194	COG1116	anion transmembrane transporter activity
ABVS_3194	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABVS_3196	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABVS_3201	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABVS_3203	COG0864	Transcriptional regulator
ABVS_3210	COG0439	Biotin carboxylase
ABVS_3214	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABVS_3217	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABVS_3217	COG1017	nitric oxide dioxygenase activity
ABVS_3218	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_3219	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABVS_3221	COG2814	Major facilitator Superfamily
ABVS_3222	COG0583	DNA-binding transcription factor activity
ABVS_3223	COG4948	Mandelate Racemase Muconate Lactonizing
ABVS_3224	COG4829	muconolactone delta-isomerase
ABVS_3226	COG4638	Rieske (2fe-2S)
ABVS_3227	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABVS_3228	COG0543	2 iron, 2 sulfur cluster binding
ABVS_3228	COG0633	Ferredoxin
ABVS_3229	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_3230	COG3135	benzoate transporter
ABVS_3231	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABVS_3232	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABVS_3233	COG0183	Belongs to the thiolase family
ABVS_3234	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABVS_3237	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_3238	COG0439	Biotin carboxylase
ABVS_3242	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABVS_3245	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABVS_3245	COG1017	nitric oxide dioxygenase activity
ABVS_3246	COG0318	PFAM AMP-dependent synthetase and ligase
ABVS_3247	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABVS_3249	COG2814	Major facilitator Superfamily
ABVS_3250	COG0583	DNA-binding transcription factor activity
ABVS_3251	COG4948	Mandelate Racemase Muconate Lactonizing
ABVS_3252	COG4829	muconolactone delta-isomerase
ABVS_3254	COG4638	Rieske (2fe-2S)
ABVS_3255	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABVS_3256	COG0633	Ferredoxin
ABVS_3256	COG0543	2 iron, 2 sulfur cluster binding
ABVS_3257	COG1028	Short-chain dehydrogenase reductase Sdr
ABVS_3258	COG3135	benzoate transporter
ABVS_3259	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABVS_3260	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABVS_3261	COG0183	Belongs to the thiolase family
ABVS_3262	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABVS_3265	COG2826	transposase and inactivated derivatives, IS30 family
ABVS_3268	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
ABVS_3269	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABVS_3270	COG0583	DNA-binding transcription factor activity
ABVS_3277	COG0730	response to heat
ABVS_3278	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABVS_3279	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ABVS_3284	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABVS_3293	COG3293	Transposase
ABVS_3294	COG4372	Transposase
ABVS_3298	COG2130	NADP-dependent
ABVS_3299	COG1309	transcriptional regulator
ABVS_3301	COG1902	pentaerythritol trinitrate reductase activity
ABVS_3303	COG1979	alcohol dehydrogenase
ABVS_3305	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ABVS_3308	COG3321	synthase
ABVS_3308	COG0604	alcohol dehydrogenase
ABVS_3309	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ABVS_3310	COG0583	DNA-binding transcription factor activity
ABVS_3311	COG4221	oxidoreductase activity
ABVS_3331	COG0431	NADPH-dependent FMN reductase
ABVS_3334	COG2132	Multicopper oxidase
ABVS_3337	COG2205	protein histidine kinase activity
ABVS_3338	COG3174	membrane
ABVS_3339	COG2217	Heavy metal translocating P-type atpase
ABVS_3345	COG3293	Transposase
ABVS_3358	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABVS_3360	COG4716	Myosin-crossreactive antigen
ABVS_3361	COG1063	alcohol dehydrogenase
ABVS_3363	COG1230	cation diffusion facilitator family transporter
ABVS_3371	COG1764	response to oxidative stress
ABVS_3372	COG1846	Transcriptional regulator
ABVS_3373	COG3293	Transposase
ABVS_3374	COG0804	urea catabolic process
ABVS_3376	COG0831	urea catabolic process
ABVS_3377	COG0829	nickel cation binding
ABVS_3380	COG0830	nickel cation binding
ABVS_3385	COG3293	Transposase
ABVS_3387	COG1192	Involved in chromosome partitioning
ABVS_3400	COG4774	siderophore transport
ABVS_3405	COG1454	alcohol dehydrogenase
ABVS_3410	COG4773	Receptor
ABVS_3413	COG3077	Addiction module antitoxin, RelB DinJ family
ABVS_3425	COG4372	Transposase
ABVS_3433	COG4372	Transposase
ABVS_3455	COG0659	secondary active sulfate transmembrane transporter activity
ABVS_3457	COG2431	L-lysine efflux transmembrane transporter activity
ABVS_3467	COG3293	Transposase
ABVS_3478	COG1280	lysine exporter protein (LysE YggA)