locus-tag class description DKE44_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain DKE44_000010 PF02767 DNA polymerase III beta subunit, central domain DKE44_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain DKE44_000020 PF01751 Toprim domain DKE44_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE44_000020 PF00204 DNA gyrase B DKE44_000020 PF00986 DNA gyrase B subunit, carboxyl terminus DKE44_000020 PF18053 DNA gyrase B subunit insert domain DKE44_000055 PF01521 Iron-sulphur cluster biosynthesis DKE44_000135 PF02911 Formyl transferase, C-terminal domain DKE44_000135 PF00551 Formyl transferase DKE44_000160 PF00860 Permease family DKE44_000210 PF07690 Major Facilitator Superfamily DKE44_000215 PF00248 Aldo/keto reductase family DKE44_000220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_000220 PF03466 LysR substrate binding domain DKE44_000235 PF00155 Aminotransferase class I and II DKE44_000235 PF00392 Bacterial regulatory proteins, gntR family DKE44_000245 PF03352 Methyladenine glycosylase DKE44_000280 PF03692 Putative zinc- or iron-chelating domain DKE44_000305 PF01259 SAICAR synthetase DKE44_000320 PF00857 Isochorismatase family DKE44_000335 PF04463 Protein of unknown function (DUF523) DKE44_000375 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE44_000375 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE44_000390 PF05962 HutD DKE44_000395 PF13340 Putative transposase of IS4/5 family (DUF4096) DKE44_000405 PF00221 Aromatic amino acid lyase DKE44_000410 PF00324 Amino acid permease DKE44_000430 PF13419 Haloacid dehalogenase-like hydrolase DKE44_000435 PF01177 Asp/Glu/Hydantoin racemase DKE44_000475 PF01381 Helix-turn-helix DKE44_000550 PF00586 AIR synthase related protein, N-terminal domain DKE44_000550 PF02769 AIR synthase related protein, C-terminal domain DKE44_000555 PF01029 NusB family DKE44_000560 PF00885 6,7-dimethyl-8-ribityllumazine synthase DKE44_000600 PF02580 D-Tyr-tRNA(Tyr) deacylase DKE44_000605 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKE44_000605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE44_000610 PF00581 Rhodanese-like domain DKE44_000685 PF02600 Disulfide bond formation protein DsbB DKE44_000760 PF05728 Uncharacterised protein family (UPF0227) DKE44_000775 PF03561 Allantoicase repeat DKE44_000790 PF00860 Permease family DKE44_000795 PF00576 HIUase/Transthyretin family DKE44_000850 PF03960 ArsC family DKE44_000855 PF03372 Endonuclease/Exonuclease/phosphatase family DKE44_000890 PF01225 Mur ligase family, catalytic domain DKE44_000890 PF08245 Mur ligase middle domain DKE44_000890 PF02875 Mur ligase family, glutamate ligase domain DKE44_000895 PF01820 D-ala D-ala ligase N-terminus DKE44_000895 PF07478 D-ala D-ala ligase C-terminus DKE44_000910 PF12327 FtsZ family, C-terminal domain DKE44_000910 PF00091 Tubulin/FtsZ family, GTPase domain DKE44_000935 PF00364 Biotin-requiring enzyme DKE44_000935 PF02817 e3 binding domain DKE44_000935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE44_000945 PF01169 Uncharacterized protein family UPF0016 DKE44_000955 PF03692 Putative zinc- or iron-chelating domain DKE44_000970 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKE44_000970 PF01243 Pyridoxamine 5'-phosphate oxidase DKE44_000995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE44_001020 PF00501 AMP-binding enzyme DKE44_001020 PF16177 Acetyl-coenzyme A synthetase N-terminus DKE44_001020 PF13193 AMP-binding enzyme C-terminal domain DKE44_001030 PF01037 Lrp/AsnC ligand binding domain DKE44_001060 PF04341 Protein of unknown function, DUF485 DKE44_001095 PF00440 Bacterial regulatory proteins, tetR family DKE44_001095 PF16925 Tetracyclin repressor-like, C-terminal domain DKE44_001125 PF03070 TENA/THI-4/PQQC family DKE44_001175 PF00171 Aldehyde dehydrogenase family DKE44_001185 PF00857 Isochorismatase family DKE44_001190 PF05726 Pirin C-terminal cupin domain DKE44_001190 PF02678 Pirin DKE44_001255 PF03466 LysR substrate binding domain DKE44_001255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_001320 PF01638 HxlR-like helix-turn-helix DKE44_001325 PF02525 Flavodoxin-like fold DKE44_001420 PF06250 YhcG PDDEXK nuclease domain DKE44_001420 PF17761 DUF1016 N-terminal domain DKE44_001490 PF00230 Major intrinsic protein DKE44_001505 PF00977 Histidine biosynthesis protein DKE44_001510 PF01636 Phosphotransferase enzyme family DKE44_001545 PF00977 Histidine biosynthesis protein DKE44_001560 PF00117 Glutamine amidotransferase class-I DKE44_001585 PF00583 Acetyltransferase (GNAT) family DKE44_001605 PF00072 Response regulator receiver domain DKE44_001605 PF00486 Transcriptional regulatory protein, C terminal DKE44_001625 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE44_001750 PF01225 Mur ligase family, catalytic domain DKE44_001750 PF08245 Mur ligase middle domain DKE44_001750 PF02875 Mur ligase family, glutamate ligase domain DKE44_001755 PF00953 Glycosyl transferase family 4 DKE44_001820 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DKE44_001820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE44_001830 PF04011 LemA family DKE44_001850 PF00114 Pilin (bacterial filament) DKE44_001850 PF07963 Prokaryotic N-terminal methylation motif DKE44_001860 PF15864 Protein glycosylation ligase DKE44_001860 PF11846 Virulence factor membrane-bound polymerase, C-terminal DKE44_001860 PF04932 O-Antigen ligase DKE44_001870 PF04324 BFD-like [2Fe-2S] binding domain DKE44_001875 PF01042 Endoribonuclease L-PSP DKE44_001880 PF02824 TGS domain DKE44_001880 PF04607 Region found in RelA / SpoT proteins DKE44_001880 PF13291 ACT domain DKE44_001885 PF01192 RNA polymerase Rpb6 DKE44_001890 PF00625 Guanylate kinase DKE44_001930 PF07963 Prokaryotic N-terminal methylation motif DKE44_001930 PF00114 Pilin (bacterial filament) DKE44_001940 PF05239 PRC-barrel domain DKE44_001940 PF01782 RimM N-terminal domain DKE44_001945 PF01746 tRNA (Guanine-1)-methyltransferase DKE44_001950 PF01245 Ribosomal protein L19 DKE44_001955 PF00561 alpha/beta hydrolase fold DKE44_001960 PF03280 Proteobacterial lipase chaperone protein DKE44_001980 PF00892 EamA-like transporter family DKE44_001990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE44_001990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE44_002015 PF02525 Flavodoxin-like fold DKE44_002030 PF12805 FUSC-like inner membrane protein yccS DKE44_002035 PF12805 FUSC-like inner membrane protein yccS DKE44_002040 PF00080 Copper/zinc superoxide dismutase (SODC) DKE44_002095 PF00202 Aminotransferase class-III DKE44_002110 PF04996 Succinylarginine dihydrolase DKE44_002145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_002145 PF03466 LysR substrate binding domain DKE44_002165 PF02091 Glycyl-tRNA synthetase alpha subunit DKE44_002215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKE44_002215 PF01488 Shikimate / quinate 5-dehydrogenase DKE44_002215 PF08501 Shikimate dehydrogenase substrate binding domain DKE44_002225 PF00925 GTP cyclohydrolase II DKE44_002235 PF00459 Inositol monophosphatase family DKE44_002250 PF02405 Permease MlaE DKE44_002260 PF05494 MlaC protein DKE44_002270 PF01544 CorA-like Mg2+ transporter protein DKE44_002275 PF03641 Possible lysine decarboxylase DKE44_002280 PF00293 NUDIX domain DKE44_002305 PF01553 Acyltransferase DKE44_002330 PF02082 Transcriptional regulator DKE44_002350 PF00117 Glutamine amidotransferase class-I DKE44_002355 PF00338 Ribosomal protein S10p/S20e DKE44_002375 PF00181 Ribosomal Proteins L2, RNA binding domain DKE44_002375 PF03947 Ribosomal Proteins L2, C-terminal domain DKE44_002380 PF00203 Ribosomal protein S19 DKE44_002385 PF00237 Ribosomal protein L22p/L17e DKE44_002395 PF00252 Ribosomal protein L16p/L10e DKE44_002400 PF00831 Ribosomal L29 protein DKE44_002405 PF00366 Ribosomal protein S17 DKE44_002415 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DKE44_002415 PF00467 KOW motif DKE44_002420 PF00281 Ribosomal protein L5 DKE44_002420 PF00673 ribosomal L5P family C-terminus DKE44_002425 PF00253 Ribosomal protein S14p/S29e DKE44_002430 PF00410 Ribosomal protein S8 DKE44_002435 PF00347 Ribosomal protein L6 DKE44_002440 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE44_002445 PF03719 Ribosomal protein S5, C-terminal domain DKE44_002445 PF00333 Ribosomal protein S5, N-terminal domain DKE44_002450 PF00327 Ribosomal protein L30p/L7e DKE44_002455 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE44_002465 PF00444 Ribosomal protein L36 DKE44_002470 PF00416 Ribosomal protein S13/S18 DKE44_002475 PF00411 Ribosomal protein S11 DKE44_002480 PF00163 Ribosomal protein S4/S9 N-terminal domain DKE44_002480 PF01479 S4 domain DKE44_002485 PF01000 RNA polymerase Rpb3/RpoA insert domain DKE44_002485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DKE44_002485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DKE44_002490 PF01196 Ribosomal protein L17 DKE44_002510 PF03937 Flavinator of succinate dehydrogenase DKE44_002540 PF09526 Probable metal-binding protein (DUF2387) DKE44_002545 PF01432 Peptidase family M3 DKE44_002595 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE44_002600 PF12833 Helix-turn-helix domain DKE44_002615 PF03358 NADPH-dependent FMN reductase DKE44_002640 PF02130 Uncharacterized protein family UPF0054 DKE44_002645 PF02562 PhoH-like protein DKE44_002655 PF01464 Transglycosylase SLT domain DKE44_002655 PF01551 Peptidase family M23 DKE44_002655 PF10145 Phage-related minor tail protein DKE44_002665 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE44_002665 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE44_002690 PF01066 CDP-alcohol phosphatidyltransferase DKE44_002770 PF02785 Biotin carboxylase C-terminal domain DKE44_002770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE44_002770 PF00289 Biotin carboxylase, N-terminal domain DKE44_002770 PF00364 Biotin-requiring enzyme DKE44_002800 PF04386 Stringent starvation protein B DKE44_002810 PF00380 Ribosomal protein S9/S16 DKE44_002820 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKE44_002825 PF00398 Ribosomal RNA adenine dimethylase DKE44_002870 PF01389 OmpA-like transmembrane domain DKE44_002870 PF00691 OmpA family DKE44_002990 PF01062 Bestrophin, RFP-TM, chloride channel DKE44_002995 PF04002 RadC-like JAB domain DKE44_003000 PF02441 Flavoprotein DKE44_003000 PF04127 DNA / pantothenate metabolism flavoprotein DKE44_003005 PF07549 SecD/SecF GG Motif DKE44_003005 PF02355 Protein export membrane protein DKE44_003015 PF02699 Preprotein translocase subunit DKE44_003050 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE44_003050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE44_003050 PF00512 His Kinase A (phospho-acceptor) domain DKE44_003050 PF00072 Response regulator receiver domain DKE44_003060 PF01063 Amino-transferase class IV DKE44_003080 PF01522 Polysaccharide deacetylase DKE44_003130 PF01336 OB-fold nucleic acid binding domain DKE44_003130 PF00152 tRNA synthetases class II (D, K and N) DKE44_003130 PF02938 GAD domain DKE44_003165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_003165 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKE44_003165 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_003165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_003185 PF00072 Response regulator receiver domain DKE44_003185 PF00486 Transcriptional regulatory protein, C terminal DKE44_003225 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_003260 PF01039 Carboxyl transferase domain DKE44_003265 PF08245 Mur ligase middle domain DKE44_003265 PF02875 Mur ligase family, glutamate ligase domain DKE44_003340 PF12833 Helix-turn-helix domain DKE44_003340 PF02311 AraC-like ligand binding domain DKE44_003370 PF00893 Small Multidrug Resistance protein DKE44_003380 PF00108 Thiolase, N-terminal domain DKE44_003380 PF02803 Thiolase, C-terminal domain DKE44_003420 PF01741 Large-conductance mechanosensitive channel, MscL DKE44_003440 PF02245 Methylpurine-DNA glycosylase (MPG) DKE44_003450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE44_003480 PF01571 Aminomethyltransferase folate-binding domain DKE44_003490 PF04343 Protein of unknown function, DUF488 DKE44_003530 PF00072 Response regulator receiver domain DKE44_003535 PF01584 CheW-like domain DKE44_003540 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DKE44_003540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKE44_003565 PF07687 Peptidase dimerisation domain DKE44_003565 PF01546 Peptidase family M20/M25/M40 DKE44_003580 PF04304 Protein of unknown function (DUF454) DKE44_003675 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_003675 PF13291 ACT domain DKE44_003705 PF02637 GatB domain DKE44_003705 PF02934 GatB/GatE catalytic domain DKE44_003715 PF02686 Glu-tRNAGln amidotransferase C subunit DKE44_003725 PF04085 rod shape-determining protein MreC DKE44_003730 PF04093 rod shape-determining protein MreD DKE44_003735 PF02545 Maf-like protein DKE44_003750 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DKE44_003750 PF06974 Protein of unknown function (DUF1298) DKE44_003755 PF01507 Phosphoadenosine phosphosulfate reductase family DKE44_003780 PF02311 AraC-like ligand binding domain DKE44_003780 PF12833 Helix-turn-helix domain DKE44_003795 PF02673 Bacitracin resistance protein BacA DKE44_003835 PF09297 NADH pyrophosphatase zinc ribbon domain DKE44_003835 PF00293 NUDIX domain DKE44_003860 PF01145 SPFH domain / Band 7 family DKE44_003895 PF00072 Response regulator receiver domain DKE44_003895 PF00486 Transcriptional regulatory protein, C terminal DKE44_003910 PF00909 Ammonium Transporter Family DKE44_003960 PF01906 Putative heavy-metal-binding DKE44_003965 PF01906 Putative heavy-metal-binding DKE44_003970 PF02321 Outer membrane efflux protein DKE44_003980 PF00529 HlyD membrane-fusion protein of T1SS DKE44_003980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE44_003985 PF01569 PAP2 superfamily DKE44_003995 PF00348 Polyprenyl synthetase DKE44_004005 PF00829 Ribosomal prokaryotic L21 protein DKE44_004010 PF01016 Ribosomal L27 protein DKE44_004025 PF02403 Seryl-tRNA synthetase N-terminal domain DKE44_004025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DKE44_004035 PF00588 SpoU rRNA Methylase family DKE44_004065 PF03099 Biotin/lipoate A/B protein ligase family DKE44_004070 PF04359 Protein of unknown function (DUF493) DKE44_004105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE44_004120 PF13085 2Fe-2S iron-sulfur cluster binding domain DKE44_004150 PF00549 CoA-ligase DKE44_004150 PF08442 ATP-grasp domain DKE44_004160 PF00579 tRNA synthetases class I (W and Y) DKE44_004240 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE44_004250 PF00582 Universal stress protein family DKE44_004260 PF01042 Endoribonuclease L-PSP DKE44_004295 PF01985 CRS1 / YhbY (CRM) domain DKE44_004300 PF01728 FtsJ-like methyltransferase DKE44_004305 PF17862 AAA+ lid domain DKE44_004305 PF06480 FtsH Extracellular DKE44_004305 PF00004 ATPase family associated with various cellular activities (AAA) DKE44_004305 PF01434 Peptidase family M41 DKE44_004350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DKE44_004350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DKE44_004395 PF00166 Chaperonin 10 Kd subunit DKE44_004495 PF07690 Major Facilitator Superfamily DKE44_004510 PF02417 Chromate transporter DKE44_004515 PF09828 Chromate resistance exported protein DKE44_004535 PF01219 Prokaryotic diacylglycerol kinase DKE44_004545 PF03009 Glycerophosphoryl diester phosphodiesterase family DKE44_004560 PF01435 Peptidase family M48 DKE44_004565 PF01464 Transglycosylase SLT domain DKE44_004605 PF00668 Condensation domain DKE44_004605 PF00550 Phosphopantetheine attachment site DKE44_004605 PF00501 AMP-binding enzyme DKE44_004605 PF00975 Thioesterase domain DKE44_004605 PF13193 AMP-binding enzyme C-terminal domain DKE44_004615 PF09857 Putative toxin of bacterial toxin-antitoxin pair DKE44_004710 PF00216 Bacterial DNA-binding protein DKE44_004765 PF02634 FdhD/NarQ family DKE44_004770 PF06803 Protein of unknown function (DUF1232) DKE44_004800 PF00324 Amino acid permease DKE44_004815 PF01678 Diaminopimelate epimerase DKE44_004825 PF01810 LysE type translocator DKE44_004850 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKE44_004850 PF00753 Metallo-beta-lactamase superfamily DKE44_004920 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE44_004935 PF00005 ABC transporter DKE44_004960 PF00551 Formyl transferase DKE44_004965 PF02769 AIR synthase related protein, C-terminal domain DKE44_004965 PF00586 AIR synthase related protein, N-terminal domain DKE44_004975 PF08299 Bacterial dnaA protein helix-turn-helix DKE44_004975 PF11638 DnaA N-terminal domain DKE44_004975 PF00308 Bacterial dnaA protein DKE44_005010 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DKE44_005035 PF02472 Biopolymer transport protein ExbD/TolR DKE44_005055 PF05491 RuvB C-terminal winged helix domain DKE44_005055 PF17864 RuvB AAA lid domain DKE44_005055 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKE44_005060 PF01330 RuvA N terminal domain DKE44_005060 PF07499 RuvA, C-terminal domain DKE44_005095 PF01784 NIF3 (NGG1p interacting factor 3) DKE44_005100 PF00378 Enoyl-CoA hydratase/isomerase DKE44_005105 PF01467 Cytidylyltransferase-like DKE44_005105 PF00293 NUDIX domain DKE44_005140 PF04055 Radical SAM superfamily DKE44_005195 PF02223 Thymidylate kinase DKE44_005210 PF13180 PDZ domain DKE44_005260 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKE44_005335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKE44_005335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKE44_005355 PF00696 Amino acid kinase family DKE44_005355 PF01472 PUA domain DKE44_005370 PF01207 Dihydrouridine synthase (Dus) DKE44_005420 PF13340 Putative transposase of IS4/5 family (DUF4096) DKE44_005435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE44_005445 PF00768 D-alanyl-D-alanine carboxypeptidase DKE44_005445 PF07943 Penicillin-binding protein 5, C-terminal domain DKE44_005460 PF00849 RNA pseudouridylate synthase DKE44_005490 PF06779 Uncharacterised MFS-type transporter YbfB DKE44_005535 PF02581 Thiamine monophosphate synthase DKE44_005540 PF00202 Aminotransferase class-III DKE44_005595 PF00202 Aminotransferase class-III DKE44_005605 PF00171 Aldehyde dehydrogenase family DKE44_005625 PF12849 PBP superfamily domain DKE44_005640 PF00005 ABC transporter DKE44_005670 PF00206 Lyase DKE44_005670 PF08328 Adenylosuccinate lyase C-terminal DKE44_005675 PF04356 Protein of unknown function (DUF489) DKE44_005695 PF00768 D-alanyl-D-alanine carboxypeptidase DKE44_005695 PF07943 Penicillin-binding protein 5, C-terminal domain DKE44_005735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE44_005745 PF01197 Ribosomal protein L31 DKE44_005765 PF01132 Elongation factor P (EF-P) OB domain DKE44_005765 PF08207 Elongation factor P (EF-P) KOW-like domain DKE44_005765 PF09285 Elongation factor P, C-terminal DKE44_005770 PF13722 5TM C-terminal transporter carbon starvation CstA DKE44_005770 PF02554 Carbon starvation protein CstA DKE44_005825 PF02954 Bacterial regulatory protein, Fis family DKE44_005840 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DKE44_006105 PF03466 LysR substrate binding domain DKE44_006105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_006115 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_006120 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_006130 PF00893 Small Multidrug Resistance protein DKE44_006135 PF12838 4Fe-4S dicluster domain DKE44_006150 PF02567 Phenazine biosynthesis-like protein DKE44_006155 PF00970 Oxidoreductase FAD-binding domain DKE44_006155 PF00175 Oxidoreductase NAD-binding domain DKE44_006175 PF04076 Bacterial OB fold (BOF) protein DKE44_006205 PF14814 Bifunctional transglycosylase second domain DKE44_006205 PF00912 Transglycosylase DKE44_006205 PF00905 Penicillin binding protein transpeptidase domain DKE44_006210 PF01513 ATP-NAD kinase DKE44_006215 PF07023 Protein of unknown function (DUF1315) DKE44_006235 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_006235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_006235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_006285 PF03883 Peroxide stress protein YaaA DKE44_006300 PF04241 Protein of unknown function (DUF423) DKE44_006315 PF00313 'Cold-shock' DNA-binding domain DKE44_006335 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKE44_006335 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKE44_006390 PF09424 Yqey-like protein DKE44_006505 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family DKE44_006540 PF13276 HTH-like domain DKE44_006540 PF13333 Integrase core domain DKE44_006540 PF00665 Integrase core domain DKE44_006705 PF12146 Serine aminopeptidase, S33 DKE44_006825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE44_006825 PF08521 Two-component sensor kinase N-terminal DKE44_006825 PF00512 His Kinase A (phospho-acceptor) domain DKE44_006830 PF00486 Transcriptional regulatory protein, C terminal DKE44_006830 PF00072 Response regulator receiver domain DKE44_006845 PF00892 EamA-like transporter family DKE44_006850 PF07995 Glucose / Sorbosone dehydrogenase DKE44_006885 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_006890 PF09383 NIL domain DKE44_006890 PF00005 ABC transporter DKE44_006905 PF13276 HTH-like domain DKE44_006905 PF13333 Integrase core domain DKE44_006905 PF00665 Integrase core domain DKE44_006925 PF02954 Bacterial regulatory protein, Fis family DKE44_006945 PF13932 GidA associated domain DKE44_006945 PF01134 Glucose inhibited division protein A DKE44_006990 PF03948 Ribosomal protein L9, C-terminal domain DKE44_006990 PF01281 Ribosomal protein L9, N-terminal domain DKE44_006995 PF01084 Ribosomal protein S18 DKE44_007010 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKE44_007040 PF03618 Kinase/pyrophosphorylase DKE44_007075 PF13994 PgaD-like protein DKE44_007105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_007105 PF03466 LysR substrate binding domain DKE44_007115 PF03462 PCRF domain DKE44_007115 PF00472 RF-1 domain DKE44_007120 PF17827 PrmC N-terminal domain DKE44_007120 PF13847 Methyltransferase domain DKE44_007140 PF00106 short chain dehydrogenase DKE44_007145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_007145 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_007145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_007150 PF13193 AMP-binding enzyme C-terminal domain DKE44_007150 PF00501 AMP-binding enzyme DKE44_007160 PF00899 ThiF family DKE44_007165 PF03109 ABC1 family DKE44_007190 PF02669 K+-transporting ATPase, c chain DKE44_007200 PF00072 Response regulator receiver domain DKE44_007200 PF00486 Transcriptional regulatory protein, C terminal DKE44_007215 PF03232 Ubiquinone biosynthesis protein COQ7 DKE44_007265 PF07690 Major Facilitator Superfamily DKE44_007315 PF01119 DNA mismatch repair protein, C-terminal domain DKE44_007315 PF08676 MutL C terminal dimerisation domain DKE44_007325 PF17209 Hfq protein DKE44_007360 PF02540 NAD synthase DKE44_007360 PF00958 GMP synthase C terminal domain DKE44_007360 PF00117 Glutamine amidotransferase class-I DKE44_007375 PF13520 Amino acid permease DKE44_007395 PF00465 Iron-containing alcohol dehydrogenase DKE44_007410 PF06445 GyrI-like small molecule binding domain DKE44_007415 PF02110 Hydroxyethylthiazole kinase family DKE44_007470 PF01817 Chorismate mutase type II DKE44_007510 PF03328 HpcH/HpaI aldolase/citrate lyase family DKE44_007520 PF07690 Major Facilitator Superfamily DKE44_007540 PF00924 Mechanosensitive ion channel DKE44_007610 PF02308 MgtC family DKE44_007615 PF03594 Benzoate membrane transport protein DKE44_007620 PF01037 Lrp/AsnC ligand binding domain DKE44_007635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_007635 PF03466 LysR substrate binding domain DKE44_007700 PF03061 Thioesterase superfamily DKE44_007705 PF00465 Iron-containing alcohol dehydrogenase DKE44_007715 PF00857 Isochorismatase family DKE44_007720 PF01638 HxlR-like helix-turn-helix DKE44_007730 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE44_007805 PF01220 Dehydroquinase class II DKE44_007865 PF04055 Radical SAM superfamily DKE44_007865 PF06463 Molybdenum Cofactor Synthesis C DKE44_007875 PF02391 MoaE protein DKE44_007885 PF03454 MoeA C-terminal region (domain IV) DKE44_007885 PF00994 Probable molybdopterin binding domain DKE44_007885 PF03453 MoeA N-terminal region (domain I and II) DKE44_007890 PF01638 HxlR-like helix-turn-helix DKE44_007920 PF02635 DsrE/DsrF-like family DKE44_007925 PF16363 GDP-mannose 4,6 dehydratase DKE44_007960 PF02542 YgbB family DKE44_007985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE44_007985 PF00512 His Kinase A (phospho-acceptor) domain DKE44_007985 PF00989 PAS fold DKE44_007995 PF00696 Amino acid kinase family DKE44_008000 PF01765 Ribosome recycling factor DKE44_008015 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DKE44_008015 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DKE44_008015 PF13288 DXP reductoisomerase C-terminal domain DKE44_008045 PF00132 Bacterial transferase hexapeptide (six repeats) DKE44_008045 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DKE44_008060 PF02631 RecX family DKE44_008065 PF00154 recA bacterial DNA recombination protein DKE44_008095 PF01037 Lrp/AsnC ligand binding domain DKE44_008125 PF01740 STAS domain DKE44_008125 PF00916 Sulfate permease family DKE44_008140 PF02586 SOS response associated peptidase (SRAP) DKE44_008210 PF00557 Metallopeptidase family M24 DKE44_008225 PF00462 Glutaredoxin DKE44_008230 PF00202 Aminotransferase class-III DKE44_008235 PF01380 SIS domain DKE44_008235 PF00571 CBS domain DKE44_008260 PF02881 SRP54-type protein, helical bundle domain DKE44_008260 PF00448 SRP54-type protein, GTPase domain DKE44_008285 PF08173 Membrane bound YbgT-like protein DKE44_008290 PF02322 Cytochrome bd terminal oxidase subunit II DKE44_008335 PF02386 Cation transport protein DKE44_008345 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_008345 PF00585 C-terminal regulatory domain of Threonine dehydratase DKE44_008375 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKE44_008385 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DKE44_008430 PF06418 CTP synthase N-terminus DKE44_008430 PF00117 Glutamine amidotransferase class-I DKE44_008435 PF00793 DAHP synthetase I family DKE44_008440 PF00113 Enolase, C-terminal TIM barrel domain DKE44_008440 PF03952 Enolase, N-terminal domain DKE44_008455 PF04977 Septum formation initiator DKE44_008460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DKE44_008465 PF01144 Coenzyme A transferase DKE44_008470 PF01144 Coenzyme A transferase DKE44_008475 PF02803 Thiolase, C-terminal domain DKE44_008475 PF00108 Thiolase, N-terminal domain DKE44_008480 PF00206 Lyase DKE44_008480 PF10397 Adenylosuccinate lyase C-terminus DKE44_008490 PF07690 Major Facilitator Superfamily DKE44_008495 PF02627 Carboxymuconolactone decarboxylase family DKE44_008505 PF00775 Dioxygenase DKE44_008515 PF05048 Periplasmic copper-binding protein (NosD) DKE44_008535 PF04143 Sulphur transport DKE44_008555 PF03466 LysR substrate binding domain DKE44_008555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_008560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_008560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_008560 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_008575 PF00106 short chain dehydrogenase DKE44_008600 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE44_008635 PF01613 Flavin reductase like domain DKE44_008655 PF00171 Aldehyde dehydrogenase family DKE44_008675 PF01144 Coenzyme A transferase DKE44_008680 PF01144 Coenzyme A transferase DKE44_008690 PF02426 Muconolactone delta-isomerase DKE44_008695 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKE44_008695 PF13378 Enolase C-terminal domain-like DKE44_008765 PF13411 MerR HTH family regulatory protein DKE44_008775 PF12706 Beta-lactamase superfamily domain DKE44_008780 PF00440 Bacterial regulatory proteins, tetR family DKE44_008780 PF08359 YsiA-like protein, C-terminal region DKE44_008810 PF16295 Tetracyclin repressor-like, C-terminal domain DKE44_008810 PF00440 Bacterial regulatory proteins, tetR family DKE44_008840 PF07690 Major Facilitator Superfamily DKE44_008845 PF04909 Amidohydrolase DKE44_008860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_008860 PF03466 LysR substrate binding domain DKE44_008920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE44_008920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE44_008985 PF01425 Amidase DKE44_009035 PF02824 TGS domain DKE44_009035 PF04607 Region found in RelA / SpoT proteins DKE44_009035 PF13291 ACT domain DKE44_009080 PF03466 LysR substrate binding domain DKE44_009080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_009135 PF16970 Type-1 fimbrial protein, A DKE44_009140 PF02753 Pili assembly chaperone PapD, C-terminal domain DKE44_009140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DKE44_009195 PF13091 PLD-like domain DKE44_009200 PF13091 PLD-like domain DKE44_009230 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE44_009235 PF03070 TENA/THI-4/PQQC family DKE44_009245 PF08042 PqqA family DKE44_009275 PF00857 Isochorismatase family DKE44_009275 PF00550 Phosphopantetheine attachment site DKE44_009290 PF00106 short chain dehydrogenase DKE44_009300 PF03621 MbtH-like protein DKE44_009310 PF05977 Transmembrane secretion effector DKE44_009350 PF03459 TOBE domain DKE44_009350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_009370 PF14525 AraC-binding-like domain DKE44_009370 PF12833 Helix-turn-helix domain DKE44_009380 PF01613 Flavin reductase like domain DKE44_009395 PF01738 Dienelactone hydrolase family DKE44_009400 PF07690 Major Facilitator Superfamily DKE44_009455 PF01144 Coenzyme A transferase DKE44_009475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_009475 PF03466 LysR substrate binding domain DKE44_009495 PF00206 Lyase DKE44_009495 PF10415 Fumarase C C-terminus DKE44_009525 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_009530 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKE44_009590 PF04273 Putative phosphatase (DUF442) DKE44_009590 PF00753 Metallo-beta-lactamase superfamily DKE44_009610 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_009610 PF00107 Zinc-binding dehydrogenase DKE44_009615 PF00106 short chain dehydrogenase DKE44_009620 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE44_009620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE44_009625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE44_009625 PF02817 e3 binding domain DKE44_009625 PF00364 Biotin-requiring enzyme DKE44_009635 PF00676 Dehydrogenase E1 component DKE44_009655 PF08448 PAS fold DKE44_009655 PF00990 Diguanylate cyclase, GGDEF domain DKE44_009660 PF01264 Chorismate synthase DKE44_009690 PF05166 YcgL domain DKE44_009775 PF01230 HIT domain DKE44_009910 PF04073 Aminoacyl-tRNA editing domain DKE44_009945 PF00639 PPIC-type PPIASE domain DKE44_009945 PF09312 SurA N-terminal domain DKE44_009965 PF02082 Transcriptional regulator DKE44_009970 PF00266 Aminotransferase class-V DKE44_009975 PF01592 NifU-like N terminal domain DKE44_009985 PF07743 HSCB C-terminal oligomerisation domain DKE44_009985 PF00226 DnaJ domain DKE44_009995 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE44_010040 PF01649 Ribosomal protein S20 DKE44_010070 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_010075 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_010100 PF00593 TonB dependent receptor DKE44_010100 PF07715 TonB-dependent Receptor Plug Domain DKE44_010120 PF02472 Biopolymer transport protein ExbD/TolR DKE44_010415 PF00216 Bacterial DNA-binding protein DKE44_010420 PF00575 S1 RNA binding domain DKE44_010460 PF11612 Type II secretion system (T2SS), protein J DKE44_010460 PF07963 Prokaryotic N-terminal methylation motif DKE44_010465 PF07963 Prokaryotic N-terminal methylation motif DKE44_010465 PF02501 Type II secretion system (T2SS), protein I DKE44_010480 PF01026 TatD related DNase DKE44_010495 PF02348 Cytidylyltransferase DKE44_010500 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DKE44_010505 PF00005 ABC transporter DKE44_010505 PF00664 ABC transporter transmembrane region DKE44_010535 PF00483 Nucleotidyl transferase DKE44_010545 PF03968 OstA-like protein DKE44_010545 PF04453 LPS transport system D DKE44_010555 PF01116 Fructose-bisphosphate aldolase class-II DKE44_010565 PF00162 Phosphoglycerate kinase DKE44_010625 PF01597 Glycine cleavage H-protein DKE44_010630 PF02146 Sir2 family DKE44_010675 PF04264 YceI-like domain DKE44_010725 PF03853 YjeF-related protein N-terminus DKE44_010725 PF01256 Carbohydrate kinase DKE44_010825 PF00440 Bacterial regulatory proteins, tetR family DKE44_010845 PF01037 Lrp/AsnC ligand binding domain DKE44_010865 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_010905 PF00005 ABC transporter DKE44_010905 PF09383 NIL domain DKE44_010910 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_010940 PF03591 AzlC protein DKE44_010945 PF05437 Branched-chain amino acid transport protein (AzlD) DKE44_010955 PF02222 ATP-grasp domain DKE44_010965 PF00155 Aminotransferase class I and II DKE44_010980 PF00255 Glutathione peroxidase DKE44_010985 PF01641 SelR domain DKE44_011025 PF00132 Bacterial transferase hexapeptide (six repeats) DKE44_011045 PF01177 Asp/Glu/Hydantoin racemase DKE44_011065 PF00083 Sugar (and other) transporter DKE44_011075 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_011075 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE44_011075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_011100 PF00392 Bacterial regulatory proteins, gntR family DKE44_011100 PF00155 Aminotransferase class I and II DKE44_011135 PF04172 LrgB-like family DKE44_011140 PF03788 LrgA family DKE44_011150 PF02798 Glutathione S-transferase, N-terminal domain DKE44_011150 PF14834 Glutathione S-transferase, C-terminal domain DKE44_011170 PF00581 Rhodanese-like domain DKE44_011195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_011195 PF03466 LysR substrate binding domain DKE44_011200 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE44_011210 PF00005 ABC transporter DKE44_011215 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_011220 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_011240 PF03466 LysR substrate binding domain DKE44_011240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_011255 PF00072 Response regulator receiver domain DKE44_011275 PF13404 AsnC-type helix-turn-helix domain DKE44_011275 PF01037 Lrp/AsnC ligand binding domain DKE44_011285 PF00717 Peptidase S24-like DKE44_011380 PF00501 AMP-binding enzyme DKE44_011380 PF13193 AMP-binding enzyme C-terminal domain DKE44_011390 PF00440 Bacterial regulatory proteins, tetR family DKE44_011395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_011395 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_011395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_011405 PF00378 Enoyl-CoA hydratase/isomerase DKE44_011410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE44_011410 PF00364 Biotin-requiring enzyme DKE44_011410 PF00289 Biotin carboxylase, N-terminal domain DKE44_011410 PF02785 Biotin carboxylase C-terminal domain DKE44_011415 PF00682 HMGL-like DKE44_011435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_011435 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_011435 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKE44_011435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_011455 PF01144 Coenzyme A transferase DKE44_011520 PF09339 IclR helix-turn-helix domain DKE44_011530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE44_011530 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_011530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_011545 PF00266 Aminotransferase class-V DKE44_011550 PF01266 FAD dependent oxidoreductase DKE44_011615 PF12146 Serine aminopeptidase, S33 DKE44_011630 PF01636 Phosphotransferase enzyme family DKE44_011650 PF00440 Bacterial regulatory proteins, tetR family DKE44_011650 PF16295 Tetracyclin repressor-like, C-terminal domain DKE44_011675 PF00300 Histidine phosphatase superfamily (branch 1) DKE44_011685 PF03061 Thioesterase superfamily DKE44_011690 PF00132 Bacterial transferase hexapeptide (six repeats) DKE44_011700 PF14535 AMP-binding enzyme C-terminal domain DKE44_011700 PF00501 AMP-binding enzyme DKE44_011720 PF00378 Enoyl-CoA hydratase/isomerase DKE44_011725 PF00175 Oxidoreductase NAD-binding domain DKE44_011725 PF00970 Oxidoreductase FAD-binding domain DKE44_011725 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE44_011730 PF01883 Iron-sulfur cluster assembly protein DKE44_011740 PF06243 Phenylacetic acid degradation B DKE44_011755 PF03315 Serine dehydratase beta chain DKE44_011755 PF03313 Serine dehydratase alpha chain DKE44_011765 PF09278 MerR, DNA binding DKE44_011765 PF00376 MerR family regulatory protein DKE44_011780 PF02677 Epoxyqueuosine reductase QueH DKE44_011800 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE44_011805 PF03466 LysR substrate binding domain DKE44_011805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_011840 PF00005 ABC transporter DKE44_011855 PF01402 Ribbon-helix-helix protein, copG family DKE44_011855 PF08753 NikR C terminal nickel binding domain DKE44_011870 PF01638 HxlR-like helix-turn-helix DKE44_011875 PF02525 Flavodoxin-like fold DKE44_011895 PF13823 Alcohol dehydrogenase GroES-associated DKE44_011895 PF00107 Zinc-binding dehydrogenase DKE44_011895 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_011900 PF00107 Zinc-binding dehydrogenase DKE44_011900 PF13823 Alcohol dehydrogenase GroES-associated DKE44_011900 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_011905 PF00107 Zinc-binding dehydrogenase DKE44_011905 PF13823 Alcohol dehydrogenase GroES-associated DKE44_011905 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_011915 PF12833 Helix-turn-helix domain DKE44_011915 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE44_011935 PF13333 Integrase core domain DKE44_011935 PF00665 Integrase core domain DKE44_011935 PF13276 HTH-like domain DKE44_012000 PF13411 MerR HTH family regulatory protein DKE44_012000 PF07739 TipAS antibiotic-recognition domain DKE44_012005 PF00313 'Cold-shock' DNA-binding domain DKE44_012010 PF00117 Glutamine amidotransferase class-I DKE44_012025 PF01037 Lrp/AsnC ligand binding domain DKE44_012030 PF06865 Pyrimidine/purine nucleoside phosphorylase DKE44_012040 PF07715 TonB-dependent Receptor Plug Domain DKE44_012100 PF00990 Diguanylate cyclase, GGDEF domain DKE44_012100 PF03707 Bacterial signalling protein N terminal repeat DKE44_012100 PF00563 EAL domain DKE44_012110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_012110 PF03466 LysR substrate binding domain DKE44_012125 PF00106 short chain dehydrogenase DKE44_012150 PF00037 4Fe-4S binding domain DKE44_012150 PF11953 Domain of unknown function (DUF3470) DKE44_012170 PF00132 Bacterial transferase hexapeptide (six repeats) DKE44_012185 PF03412 Peptidase C39 family DKE44_012185 PF00664 ABC transporter transmembrane region DKE44_012185 PF00005 ABC transporter DKE44_012200 PF00005 ABC transporter DKE44_012200 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKE44_012205 PF03968 OstA-like protein DKE44_012220 PF00571 CBS domain DKE44_012220 PF01380 SIS domain DKE44_012235 PF00589 Phage integrase family DKE44_012505 PF00313 'Cold-shock' DNA-binding domain DKE44_012540 PF02601 Exonuclease VII, large subunit DKE44_012540 PF13742 OB-fold nucleic acid binding domain DKE44_012600 PF06099 Phenol hydroxylase subunit DKE44_012605 PF02332 Methane/Phenol/Toluene Hydroxylase DKE44_012610 PF02406 MmoB/DmpM family DKE44_012640 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKE44_012640 PF00355 Rieske [2Fe-2S] domain DKE44_012650 PF00970 Oxidoreductase FAD-binding domain DKE44_012650 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE44_012650 PF00175 Oxidoreductase NAD-binding domain DKE44_012685 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE44_012685 PF00578 AhpC/TSA family DKE44_012705 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE44_012705 PF13192 Thioredoxin domain DKE44_012715 PF02798 Glutathione S-transferase, N-terminal domain DKE44_012715 PF00043 Glutathione S-transferase, C-terminal domain DKE44_012730 PF13417 Glutathione S-transferase, N-terminal domain DKE44_012730 PF00043 Glutathione S-transferase, C-terminal domain DKE44_012740 PF00691 OmpA family DKE44_012740 PF13488 Glycine zipper DKE44_012795 PF02566 OsmC-like protein DKE44_012800 PF13545 Crp-like helix-turn-helix domain DKE44_012800 PF00027 Cyclic nucleotide-binding domain DKE44_012825 PF13393 Histidyl-tRNA synthetase DKE44_012935 PF06381 Protein of unknown function (DUF1073) DKE44_012985 PF02599 Global regulator protein family DKE44_013000 PF01292 Prokaryotic cytochrome b561 DKE44_013005 PF00962 Adenosine/AMP deaminase DKE44_013025 PF00106 short chain dehydrogenase DKE44_013035 PF02678 Pirin DKE44_013035 PF17954 Quercetinase C-terminal cupin domain DKE44_013040 PF17932 Tetracyclin repressor-like, C-terminal domain DKE44_013040 PF00440 Bacterial regulatory proteins, tetR family DKE44_013050 PF00106 short chain dehydrogenase DKE44_013055 PF00743 Flavin-binding monooxygenase-like DKE44_013065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE44_013065 PF12833 Helix-turn-helix domain DKE44_013185 PF04958 Arginine N-succinyltransferase beta subunit DKE44_013210 PF07729 FCD domain DKE44_013210 PF00392 Bacterial regulatory proteins, gntR family DKE44_013220 PF00324 Amino acid permease DKE44_013245 PF05643 Putative bacterial lipoprotein (DUF799) DKE44_013255 PF03783 Curli production assembly/transport component CsgG DKE44_013365 PF00005 ABC transporter DKE44_013365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKE44_013370 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE44_013370 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_013390 PF00929 Exonuclease DKE44_013410 PF04972 BON domain DKE44_013415 PF02021 Uncharacterised protein family UPF0102 DKE44_013430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_013430 PF03466 LysR substrate binding domain DKE44_013435 PF01810 LysE type translocator DKE44_013530 PF02590 Predicted SPOUT methyltransferase DKE44_013545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKE44_013545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKE44_013555 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE44_013555 PF00633 Helix-hairpin-helix motif DKE44_013555 PF10576 Iron-sulfur binding domain of endonuclease III DKE44_013605 PF01730 UreF DKE44_013610 PF02814 UreE urease accessory protein, N-terminal domain DKE44_013610 PF05194 UreE urease accessory protein, C-terminal domain DKE44_013625 PF00699 Urease beta subunit DKE44_013630 PF00547 Urease, gamma subunit DKE44_013680 PF00009 Elongation factor Tu GTP binding domain DKE44_013695 PF14052 Capsule assembly protein Wzi DKE44_013715 PF00301 Rubredoxin DKE44_013725 PF00561 alpha/beta hydrolase fold DKE44_013730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_013730 PF03466 LysR substrate binding domain DKE44_013745 PF00912 Transglycosylase DKE44_013750 PF01694 Rhomboid family DKE44_013760 PF00005 ABC transporter DKE44_013765 PF13472 GDSL-like Lipase/Acylhydrolase family DKE44_013785 PF00593 TonB dependent receptor DKE44_013785 PF07715 TonB-dependent Receptor Plug Domain DKE44_013820 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_013835 PF02310 B12 binding domain DKE44_013835 PF02607 B12 binding domain DKE44_013835 PF02965 Vitamin B12 dependent methionine synthase, activation domain DKE44_013835 PF00809 Pterin binding enzyme DKE44_013835 PF02574 Homocysteine S-methyltransferase DKE44_013870 PF12833 Helix-turn-helix domain DKE44_013870 PF07883 Cupin domain DKE44_013875 PF04960 Glutaminase DKE44_013880 PF01327 Polypeptide deformylase DKE44_013895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE44_013895 PF00205 Thiamine pyrophosphate enzyme, central domain DKE44_013895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE44_013900 PF00171 Aldehyde dehydrogenase family DKE44_013935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE44_013985 PF00378 Enoyl-CoA hydratase/isomerase DKE44_014005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE44_014010 PF07152 YaeQ protein DKE44_014020 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE44_014020 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE44_014030 PF03061 Thioesterase superfamily DKE44_014040 PF02028 BCCT, betaine/carnitine/choline family transporter DKE44_014045 PF02028 BCCT, betaine/carnitine/choline family transporter DKE44_014050 PF13977 BetI-type transcriptional repressor, C-terminal DKE44_014050 PF00440 Bacterial regulatory proteins, tetR family DKE44_014065 PF06039 Malate:quinone oxidoreductase (Mqo) DKE44_014075 PF02574 Homocysteine S-methyltransferase DKE44_014255 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE44_014255 PF01464 Transglycosylase SLT domain DKE44_014375 PF01381 Helix-turn-helix DKE44_014375 PF00717 Peptidase S24-like DKE44_014435 PF07690 Major Facilitator Superfamily DKE44_014500 PF01168 Alanine racemase, N-terminal domain DKE44_014505 PF00437 Type II/IV secretion system protein DKE44_014515 PF01475 Ferric uptake regulator family DKE44_014520 PF04355 SmpA / OmlA family DKE44_014525 PF03658 RnfH family Ubiquitin DKE44_014540 PF01814 Hemerythrin HHE cation binding domain DKE44_014570 PF00692 dUTPase DKE44_014580 PF13488 Glycine zipper DKE44_014580 PF00691 OmpA family DKE44_014600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE44_014605 PF03776 Septum formation topological specificity factor MinE DKE44_014615 PF01810 LysE type translocator DKE44_014625 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE44_014655 PF00009 Elongation factor Tu GTP binding domain DKE44_014655 PF03144 Elongation factor Tu domain 2 DKE44_014655 PF03143 Elongation factor Tu C-terminal domain DKE44_014660 PF03144 Elongation factor Tu domain 2 DKE44_014660 PF00009 Elongation factor Tu GTP binding domain DKE44_014660 PF03764 Elongation factor G, domain IV DKE44_014660 PF14492 Elongation Factor G, domain II DKE44_014660 PF00679 Elongation factor G C-terminus DKE44_014680 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE44_014680 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE44_014700 PF02540 NAD synthase DKE44_014700 PF00795 Carbon-nitrogen hydrolase DKE44_014715 PF00970 Oxidoreductase FAD-binding domain DKE44_014715 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE44_014715 PF00175 Oxidoreductase NAD-binding domain DKE44_014730 PF07859 alpha/beta hydrolase fold DKE44_014735 PF02028 BCCT, betaine/carnitine/choline family transporter DKE44_014740 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE44_014765 PF00037 4Fe-4S binding domain DKE44_014770 PF01467 Cytidylyltransferase-like DKE44_014775 PF00589 Phage integrase family DKE44_014775 PF13356 Arm DNA-binding domain DKE44_015085 PF03358 NADPH-dependent FMN reductase DKE44_015095 PF01479 S4 domain DKE44_015095 PF00849 RNA pseudouridylate synthase DKE44_015100 PF13525 Outer membrane lipoprotein DKE44_015120 PF03550 Outer membrane lipoprotein LolB DKE44_015150 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE44_015150 PF14572 Phosphoribosyl synthetase-associated domain DKE44_015155 PF01386 Ribosomal L25p family DKE44_015160 PF01195 Peptidyl-tRNA hydrolase DKE44_015165 PF02261 Aspartate decarboxylase DKE44_015195 PF01476 LysM domain DKE44_015195 PF04972 BON domain DKE44_015200 PF00550 Phosphopantetheine attachment site DKE44_015215 PF01783 Ribosomal L32p protein family DKE44_015220 PF02620 Large ribosomal RNA subunit accumulation protein YceD DKE44_015230 PF01300 Telomere recombination DKE44_015235 PF02616 Segregation and condensation protein ScpA DKE44_015240 PF04079 Segregation and condensation complex subunit ScpB DKE44_015245 PF00849 RNA pseudouridylate synthase DKE44_015245 PF01479 S4 domain DKE44_015260 PF00155 Aminotransferase class I and II DKE44_015275 PF02358 Trehalose-phosphatase DKE44_015290 PF00210 Ferritin-like domain DKE44_015340 PF01207 Dihydrouridine synthase (Dus) DKE44_015395 PF10609 NUBPL iron-transfer P-loop NTPase DKE44_015460 PF05552 Conserved TM helix DKE44_015490 PF00313 'Cold-shock' DNA-binding domain DKE44_015500 PF00361 Proton-conducting membrane transporter DKE44_015505 PF00361 Proton-conducting membrane transporter DKE44_015510 PF00361 Proton-conducting membrane transporter DKE44_015510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKE44_015515 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE44_015520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE44_015525 PF12838 4Fe-4S dicluster domain DKE44_015530 PF00146 NADH dehydrogenase DKE44_015550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKE44_015550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKE44_015555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE44_015560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DKE44_015580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE44_015580 PF00512 His Kinase A (phospho-acceptor) domain DKE44_015580 PF00672 HAMP domain DKE44_015585 PF00486 Transcriptional regulatory protein, C terminal DKE44_015585 PF00072 Response regulator receiver domain DKE44_015605 PF00268 Ribonucleotide reductase, small chain DKE44_015620 PF01613 Flavin reductase like domain DKE44_015640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_015640 PF03466 LysR substrate binding domain DKE44_015660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE44_015660 PF03466 LysR substrate binding domain DKE44_015680 PF07690 Major Facilitator Superfamily DKE44_015715 PF00589 Phage integrase family DKE44_015715 PF12167 Arm DNA-binding domain DKE44_015720 PF00929 Exonuclease DKE44_016015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE44_016015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE44_016020 PF00893 Small Multidrug Resistance protein DKE44_016050 PF00834 Ribulose-phosphate 3 epimerase family DKE44_016060 PF00756 Putative esterase DKE44_016130 PF01634 ATP phosphoribosyltransferase DKE44_016135 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DKE44_016140 PF01722 BolA-like protein DKE44_016145 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DKE44_016195 PF00795 Carbon-nitrogen hydrolase DKE44_016250 PF02325 YGGT family DKE44_016265 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DKE44_016275 PF00085 Thioredoxin DKE44_016295 PF00216 Bacterial DNA-binding protein DKE44_016305 PF01409 tRNA synthetases class II core domain (F) DKE44_016305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DKE44_016335 PF07690 Major Facilitator Superfamily DKE44_016345 PF02798 Glutathione S-transferase, N-terminal domain DKE44_016345 PF00043 Glutathione S-transferase, C-terminal domain DKE44_016365 PF04751 Protein of unknown function (DUF615) DKE44_016370 PF00381 PTS HPr component phosphorylation site DKE44_016380 PF02569 Pantoate-beta-alanine ligase DKE44_016385 PF02548 Ketopantoate hydroxymethyltransferase DKE44_016405 PF03819 MazG nucleotide pyrophosphohydrolase domain DKE44_016430 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_016470 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE44_016480 PF00892 EamA-like transporter family DKE44_016525 PF01022 Bacterial regulatory protein, arsR family DKE44_016550 PF17910 FeoB cytosolic helical domain DKE44_016550 PF02421 Ferrous iron transport protein B DKE44_016550 PF07670 Nucleoside recognition DKE44_016550 PF07664 Ferrous iron transport protein B C terminus DKE44_016550 PF04023 FeoA domain DKE44_016570 PF00873 AcrB/AcrD/AcrF family DKE44_016615 PF04945 YHS domain DKE44_016700 PF01207 Dihydrouridine synthase (Dus) DKE44_016775 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKE44_016775 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKE44_016780 PF10369 Small subunit of acetolactate synthase DKE44_016795 PF09334 tRNA synthetases class I (M) DKE44_016795 PF13603 Leucyl-tRNA synthetase, Domain 2 DKE44_016795 PF08264 Anticodon-binding domain of tRNA DKE44_016795 PF00133 tRNA synthetases class I (I, L, M and V) DKE44_016800 PF08264 Anticodon-binding domain of tRNA DKE44_016800 PF13603 Leucyl-tRNA synthetase, Domain 2 DKE44_016800 PF09334 tRNA synthetases class I (M) DKE44_016800 PF00133 tRNA synthetases class I (I, L, M and V) DKE44_016805 PF09334 tRNA synthetases class I (M) DKE44_016805 PF13603 Leucyl-tRNA synthetase, Domain 2 DKE44_016805 PF00133 tRNA synthetases class I (I, L, M and V) DKE44_016805 PF08264 Anticodon-binding domain of tRNA DKE44_016865 PF00462 Glutaredoxin DKE44_016870 PF02556 Preprotein translocase subunit SecB DKE44_016885 PF01011 PQQ enzyme repeat DKE44_016885 PF13360 PQQ-like domain DKE44_016900 PF04551 GcpE protein DKE44_016920 PF00334 Nucleoside diphosphate kinase DKE44_016925 PF04384 Iron-sulphur cluster assembly DKE44_016995 PF00871 Acetokinase family DKE44_017000 PF07085 DRTGG domain DKE44_017000 PF01515 Phosphate acetyl/butaryl transferase DKE44_017025 PF00574 Clp protease DKE44_017075 PF02416 mttA/Hcf106 family DKE44_017115 PF00303 Thymidylate synthase DKE44_017120 PF00186 Dihydrofolate reductase DKE44_017135 PF01625 Peptide methionine sulfoxide reductase DKE44_017145 PF01618 MotA/TolQ/ExbB proton channel family DKE44_017170 PF00171 Aldehyde dehydrogenase family DKE44_017225 PF08272 Topoisomerase I zinc-ribbon-like DKE44_017225 PF01751 Toprim domain DKE44_017225 PF01131 DNA topoisomerase DKE44_017225 PF01396 Topoisomerase DNA binding C4 zinc finger DKE44_017235 PF01638 HxlR-like helix-turn-helix DKE44_017240 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_017240 PF00107 Zinc-binding dehydrogenase DKE44_017260 PF01810 LysE type translocator DKE44_017285 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKE44_017285 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKE44_017305 PF01416 tRNA pseudouridine synthase DKE44_017315 PF01176 Translation initiation factor 1A / IF-1 DKE44_017330 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE44_017395 PF12706 Beta-lactamase superfamily domain DKE44_017415 PF02798 Glutathione S-transferase, N-terminal domain DKE44_017420 PF13280 WYL domain DKE44_017420 PF08279 HTH domain DKE44_017430 PF01479 S4 domain DKE44_017430 PF00849 RNA pseudouridylate synthase DKE44_017470 PF06969 HemN C-terminal domain DKE44_017470 PF04055 Radical SAM superfamily DKE44_017485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE44_017485 PF02770 Acyl-CoA dehydrogenase, middle domain DKE44_017485 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE44_017500 PF01197 Ribosomal protein L31 DKE44_017510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DKE44_017530 PF03884 DNA gyrase inhibitor YacG DKE44_017535 PF00753 Metallo-beta-lactamase superfamily DKE44_017575 PF03471 Transporter associated domain DKE44_017575 PF00571 CBS domain DKE44_017580 PF00795 Carbon-nitrogen hydrolase DKE44_017620 PF01430 Hsp33 protein DKE44_017650 PF00312 Ribosomal protein S15 DKE44_017695 PF01209 ubiE/COQ5 methyltransferase family DKE44_017705 PF03109 ABC1 family DKE44_017710 PF01494 FAD binding domain DKE44_017745 PF00361 Proton-conducting membrane transporter DKE44_017755 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE44_017775 PF13184 NusA-like KH domain DKE44_017775 PF00575 S1 RNA binding domain DKE44_017775 PF08529 NusA N-terminal domain DKE44_017800 PF03840 Preprotein translocase SecG subunit DKE44_017835 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE44_017835 PF00588 SpoU rRNA Methylase family DKE44_017850 PF02463 RecF/RecN/SMC N terminal domain DKE44_017855 PF02622 Uncharacterized ACR, COG1678 DKE44_017860 PF03652 Holliday junction resolvase DKE44_017890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE44_017890 PF12833 Helix-turn-helix domain DKE44_017890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE44_017890 PF02805 Metal binding domain of Ada DKE44_017905 PF01541 GIY-YIG catalytic domain DKE44_017905 PF08459 UvrC Helix-hairpin-helix N-terminal DKE44_017905 PF02151 UvrB/uvrC motif DKE44_017935 PF02803 Thiolase, C-terminal domain DKE44_017935 PF00108 Thiolase, N-terminal domain DKE44_018025 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE44_018025 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE44_018030 PF00466 Ribosomal protein L10 DKE44_018035 PF00687 Ribosomal protein L1p/L10e family DKE44_018040 PF00298 Ribosomal protein L11, RNA binding domain DKE44_018040 PF03946 Ribosomal protein L11, N-terminal domain DKE44_018045 PF02357 Transcription termination factor nusG DKE44_018045 PF00467 KOW motif DKE44_018050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DKE44_018060 PF03143 Elongation factor Tu C-terminal domain DKE44_018060 PF00009 Elongation factor Tu GTP binding domain DKE44_018060 PF03144 Elongation factor Tu domain 2 DKE44_018140 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKE44_018140 PF03900 Porphobilinogen deaminase, C-terminal domain DKE44_018160 PF04362 Bacterial Fe(2+) trafficking DKE44_018165 PF01895 PhoU domain DKE44_018195 PF00293 NUDIX domain DKE44_018205 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE44_018215 PF01098 Cell cycle protein DKE44_018255 PF00291 Pyridoxal-phosphate dependent enzyme DKE44_018260 PF00768 D-alanyl-D-alanine carboxypeptidase DKE44_018265 PF00196 Bacterial regulatory proteins, luxR family DKE44_018265 PF00072 Response regulator receiver domain DKE44_018285 PF01676 Metalloenzyme superfamily DKE44_018285 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DKE44_018290 PF03739 Lipopolysaccharide export system permease LptF/LptG DKE44_018320 PF00677 Lumazine binding domain DKE44_018335 PF03477 ATP cone domain DKE44_018340 PF00909 Ammonium Transporter Family DKE44_018365 PF00596 Class II Aldolase and Adducin N-terminal domain DKE44_018380 PF03573 outer membrane porin, OprD family DKE44_018385 PF00719 Inorganic pyrophosphatase DKE44_018405 PF00521 DNA gyrase/topoisomerase IV, subunit A DKE44_018405 PF03989 DNA gyrase C-terminal domain, beta-propeller DKE44_018415 PF03458 UPF0126 domain DKE44_018420 PF02810 SEC-C motif DKE44_018425 PF03471 Transporter associated domain DKE44_018425 PF03741 Integral membrane protein TerC family DKE44_018480 PF03358 NADPH-dependent FMN reductase DKE44_018555 PF01327 Polypeptide deformylase DKE44_018580 PF01300 Telomere recombination DKE44_018590 PF00440 Bacterial regulatory proteins, tetR family DKE44_018615 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE44_018625 PF00231 ATP synthase DKE44_018630 PF00306 ATP synthase alpha/beta chain, C terminal domain DKE44_018630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE44_018630 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE44_018645 PF00137 ATP synthase subunit C DKE44_018650 PF00119 ATP synthase A chain DKE44_018675 PF00950 ABC 3 transport family DKE44_018685 PF04261 Dyp-type peroxidase family DKE44_018720 PF02678 Pirin DKE44_018720 PF05726 Pirin C-terminal cupin domain DKE44_018735 PF13302 Acetyltransferase (GNAT) domain DKE44_018885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DKE44_018885 PF02378 Phosphotransferase system, EIIC DKE44_018895 PF05524 PEP-utilising enzyme, N-terminal DKE44_018895 PF00391 PEP-utilising enzyme, mobile domain DKE44_018895 PF02896 PEP-utilising enzyme, TIM barrel domain DKE44_018895 PF00381 PTS HPr component phosphorylation site DKE44_018895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DKE44_018900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DKE44_018900 PF00381 PTS HPr component phosphorylation site DKE44_018945 PF00765 Autoinducer synthase DKE44_018955 PF00378 Enoyl-CoA hydratase/isomerase DKE44_018960 PF00378 Enoyl-CoA hydratase/isomerase DKE44_018970 PF00501 AMP-binding enzyme DKE44_018970 PF13193 AMP-binding enzyme C-terminal domain DKE44_018975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE44_018975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE44_018980 PF00171 Aldehyde dehydrogenase family DKE44_018990 PF00324 Amino acid permease DKE44_019000 PF01042 Endoribonuclease L-PSP DKE44_019005 PF00842 Alanine racemase, C-terminal domain DKE44_019005 PF01168 Alanine racemase, N-terminal domain DKE44_019010 PF01266 FAD dependent oxidoreductase DKE44_019105 PF01070 FMN-dependent dehydrogenase DKE44_019110 PF07729 FCD domain DKE44_019110 PF00392 Bacterial regulatory proteins, gntR family DKE44_019130 PF16363 GDP-mannose 4,6 dehydratase DKE44_019145 PF00483 Nucleotidyl transferase DKE44_019190 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKE44_019205 PF05523 WxcM-like, C-terminal DKE44_019210 PF00483 Nucleotidyl transferase DKE44_019230 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE44_019245 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DKE44_019245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE44_019250 PF03023 Lipid II flippase MurJ DKE44_019275 PF01138 3' exoribonuclease family, domain 1 DKE44_019275 PF03725 3' exoribonuclease family, domain 2 DKE44_019280 PF00487 Fatty acid desaturase DKE44_019290 PF00440 Bacterial regulatory proteins, tetR family DKE44_019310 PF13419 Haloacid dehalogenase-like hydrolase DKE44_019315 PF00106 short chain dehydrogenase DKE44_019345 PF00296 Luciferase-like monooxygenase DKE44_019350 PF00528 Binding-protein-dependent transport system inner membrane component DKE44_019380 PF08264 Anticodon-binding domain of tRNA DKE44_019380 PF00133 tRNA synthetases class I (I, L, M and V) DKE44_019380 PF06827 Zinc finger found in FPG and IleRS DKE44_019460 PF01025 GrpE DKE44_019510 PF01225 Mur ligase family, catalytic domain DKE44_019510 PF02875 Mur ligase family, glutamate ligase domain DKE44_019510 PF08245 Mur ligase middle domain DKE44_019550 PF00156 Phosphoribosyl transferase domain DKE44_019585 PF01809 Putative membrane protein insertion efficiency factor DKE44_019595 PF00468 Ribosomal protein L34 DKE44_019630 PF01381 Helix-turn-helix DKE44_019670 PF13175 AAA ATPase domain DKE44_019755 PF02416 mttA/Hcf106 family DKE44_019820 PF13614 AAA domain DKE44_020010 PF08659 KR domain DKE44_020010 PF00698 Acyl transferase domain DKE44_020010 PF08240 Alcohol dehydrogenase GroES-like domain DKE44_020010 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE44_020010 PF00550 Phosphopantetheine attachment site DKE44_020010 PF14765 Polyketide synthase dehydratase DKE44_020010 PF16197 Ketoacyl-synthetase C-terminal extension DKE44_020010 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE44_020020 PF00892 EamA-like transporter family DKE44_020045 PF02583 Metal-sensitive transcriptional repressor DKE44_020140 PF00589 Phage integrase family DKE44_020140 PF02899 Phage integrase, N-terminal SAM-like domain DKE44_020170 PF13610 DDE domain DKE44_020340 PF09383 NIL domain DKE44_020340 PF00005 ABC transporter DKE44_020500 PF00772 DnaB-like helicase N terminal domain DKE44_020500 PF03796 DnaB-like helicase C terminal domain DKE44_020600 PF00589 Phage integrase family DKE44_020635 PF05036 Sporulation related domain DKE44_020635 PF03330 Lytic transglycolase DKE44_020675 PF00557 Metallopeptidase family M24 DKE44_020700 PF04055 Radical SAM superfamily DKE44_020760 PF13180 PDZ domain DKE44_020770 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE44_020770 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE44_020830 PF00117 Glutamine amidotransferase class-I DKE44_020850 PF02885 Glycosyl transferase family, helical bundle domain DKE44_020850 PF00591 Glycosyl transferase family, a/b domain DKE44_020910 PF01208 Uroporphyrinogen decarboxylase (URO-D) DKE44_020925 PF02678 Pirin DKE44_020925 PF17954 Quercetinase C-terminal cupin domain DKE44_020970 PF13438 Domain of unknown function (DUF4113) DKE44_020970 PF11799 impB/mucB/samB family C-terminal domain DKE44_020970 PF00817 impB/mucB/samB family DKE44_021090 PF00905 Penicillin binding protein transpeptidase domain DKE44_021165 PF03389 MobA/MobL family DKE44_021180 PF01850 PIN domain DKE44_021185 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DKE44_021205 PF01051 Initiator Replication protein