RR32_00005 SM00382 ATPases associated with a variety of cellular activities RR32_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RR32_00010 SM00480 DNA polymerase III beta subunit RR32_00020 SM00387 Histidine kinase-like ATPases RR32_00020 SM00433 TopoisomeraseII RR32_00035 SM00382 ATPases associated with a variety of cellular activities RR32_00180 SM00271 DnaJ molecular chaperone homology domain RR32_00220 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_00225 SM00829 Enoylreductase RR32_00245 SM00478 endonuclease III RR32_00245 SM00525 RR32_00245 RR32_00275 SM00382 ATPases associated with a variety of cellular activities RR32_00300 SM01130 RR32_00300 RR32_00330 SM00346 helix_turn_helix isocitrate lyase regulation RR32_00360 SM00833 Cobalamin synthesis protein cobW C-terminal domain RR32_00370 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_00370 SM00866 RR32_00370 RR32_00500 SM00450 Rhodanese Homology Domain RR32_00520 SM00387 Histidine kinase-like ATPases RR32_00520 SM00388 His Kinase A (phosphoacceptor) domain RR32_00525 SM00448 cheY-homologous receiver domain RR32_00525 SM00862 Transcriptional regulatory protein, C terminal RR32_00580 SM00257 Lysin motif RR32_00630 SM00387 Histidine kinase-like ATPases RR32_00630 SM00433 TopoisomeraseII RR32_00660 SM00095 Transthyretin RR32_00695 SM00267 diguanylate cyclase RR32_00760 SM00842 Cell division protein FtsA RR32_00765 SM00864 Tubulin/FtsZ family, GTPase domain RR32_00765 SM00865 Tubulin/FtsZ family, C-terminal domain RR32_00805 SM00849 Metallo-beta-lactamase superfamily RR32_00815 SM00116 Domain in cystathionine beta-synthase and other proteins. RR32_00815 SM01240 RR32_00815 RR32_00840 SM00937 RR32_00840 RR32_00845 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RR32_00890 SM00344 helix_turn_helix ASNC type RR32_00905 SM00421 helix_turn_helix, Lux Regulon RR32_00905 SM00448 cheY-homologous receiver domain RR32_00915 SM00387 Histidine kinase-like ATPases RR32_00915 SM00388 His Kinase A (phosphoacceptor) domain RR32_00915 SM00448 cheY-homologous receiver domain RR32_00945 SM00267 diguanylate cyclase RR32_00960 SM00829 Enoylreductase RR32_01015 SM00530 Helix-turn-helix XRE-family like proteins RR32_01025 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_01125 SM00530 Helix-turn-helix XRE-family like proteins RR32_01130 SM00530 Helix-turn-helix XRE-family like proteins RR32_01140 SM01236 RR32_01140 RR32_01190 SM00342 helix_turn_helix, arabinose operon control protein RR32_01265 SM00477 DNA/RNA non-specific endonuclease RR32_01265 SM00892 DNA/RNA non-specific endonuclease RR32_01285 SM00342 helix_turn_helix, arabinose operon control protein RR32_01305 SM00357 Cold shock protein domain RR32_01320 SM00530 Helix-turn-helix XRE-family like proteins RR32_01325 SM00382 ATPases associated with a variety of cellular activities RR32_01335 SM00474 3'-5' exonuclease RR32_01380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RR32_01380 SM00387 Histidine kinase-like ATPases RR32_01380 SM00388 His Kinase A (phosphoacceptor) domain RR32_01385 SM00448 cheY-homologous receiver domain RR32_01385 SM00862 Transcriptional regulatory protein, C terminal RR32_01390 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_01390 SM00732 Likely ribonuclease with RNase H fold. RR32_01395 SM00947 Carbonic anhydrase RR32_01415 SM00382 ATPases associated with a variety of cellular activities RR32_01420 SM00671 Sel1-like repeats. RR32_01605 SM00842 Cell division protein FtsA RR32_01625 SM00965 Secretin and TonB N terminus short domain RR32_01710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RR32_01710 SM00954 Region found in RelA / SpoT proteins RR32_01715 SM01409 RR32_01715 RR32_01720 SM00072 Guanylate kinase homologues. RR32_01910 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR32_02010 SM00116 Domain in cystathionine beta-synthase and other proteins. RR32_02050 SM00861 Transketolase, pyrimidine binding domain RR32_02060 SM00487 DEAD-like helicases superfamily RR32_02060 SM00490 helicase superfamily c-terminal domain RR32_02070 SM00382 ATPases associated with a variety of cellular activities RR32_02115 SM00487 DEAD-like helicases superfamily RR32_02115 SM00490 helicase superfamily c-terminal domain RR32_02130 SM00563 Phosphate acyltransferases RR32_02180 SM01403 RR32_02180 RR32_02200 SM01382 RR32_02200 RR32_02200 SM01383 RR32_02200 RR32_02215 SM00322 K homology RNA-binding domain RR32_02235 SM01374 RR32_02235 RR32_02240 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RR32_02305 SM00363 S4 RNA-binding domain RR32_02305 SM01390 RR32_02305 RR32_02310 SM00662 RNA polymerases D RR32_02370 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_02370 SM00955 RR32_02370 RR32_02420 SM00342 helix_turn_helix, arabinose operon control protein RR32_02470 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_02500 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RR32_02590 SM00878 Biotin carboxylase C-terminal domain RR32_02645 SM00650 Ribosomal RNA adenine dimethylases RR32_02675 SM00563 Phosphate acyltransferases RR32_02680 SM00155 Phospholipase D. Active site motifs. RR32_02695 SM00267 diguanylate cyclase RR32_02775 SM00450 Rhodanese Homology Domain RR32_02800 SM00481 DNA polymerase alpha chain like domain RR32_02830 SM01323 RR32_02830 RR32_02860 SM00387 Histidine kinase-like ATPases RR32_02860 SM00388 His Kinase A (phosphoacceptor) domain RR32_02965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RR32_02965 SM00387 Histidine kinase-like ATPases RR32_02965 SM00388 His Kinase A (phosphoacceptor) domain RR32_02970 SM00448 cheY-homologous receiver domain RR32_02970 SM00862 Transcriptional regulatory protein, C terminal RR32_03035 SM00342 helix_turn_helix, arabinose operon control protein RR32_03065 SM00849 Metallo-beta-lactamase superfamily RR32_03075 SM00957 SecA DEAD-like domain RR32_03075 SM00958 SecA preprotein cross-linking domain RR32_03125 SM00342 helix_turn_helix, arabinose operon control protein RR32_03140 SM00564 beta-propeller repeat RR32_03205 SM00838 Elongation factor G C-terminus RR32_03225 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RR32_03225 SM01232 RR32_03225 RR32_03250 SM00671 Sel1-like repeats. RR32_03305 SM00448 cheY-homologous receiver domain RR32_03310 SM00448 cheY-homologous receiver domain RR32_03315 SM00260 Two component signalling adaptor domain RR32_03320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RR32_03325 SM00073 Histidine Phosphotransfer domain RR32_03325 SM00260 Two component signalling adaptor domain RR32_03325 SM00387 Histidine kinase-like ATPases RR32_03325 SM00448 cheY-homologous receiver domain RR32_03325 SM01231 RR32_03325 RR32_03470 SM00845 GatB domain RR32_03505 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_03540 SM00342 helix_turn_helix, arabinose operon control protein RR32_03560 SM00342 helix_turn_helix, arabinose operon control protein RR32_03565 SM00829 Enoylreductase RR32_03705 SM00244 prohibitin homologues RR32_03720 SM00563 Phosphate acyltransferases RR32_03740 SM00448 cheY-homologous receiver domain RR32_03740 SM00862 Transcriptional regulatory protein, C terminal RR32_03745 SM00387 Histidine kinase-like ATPases RR32_03745 SM00388 His Kinase A (phosphoacceptor) domain RR32_03790 SM00822 RR32_03790 RR32_03825 SM00014 Acid phosphatase homologues RR32_03930 SM00450 Rhodanese Homology Domain RR32_03965 SM00861 Transketolase, pyrimidine binding domain RR32_03985 SM00881 CoA binding domain RR32_04020 SM00854 Bacterial capsule synthesis protein PGA_cap RR32_04065 SM00851 MGS-like domain RR32_04065 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RR32_04070 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RR32_04090 SM01103 RR32_04090 RR32_04100 SM00382 ATPases associated with a variety of cellular activities RR32_04175 SM00046 Diacylglycerol kinase catalytic domain (presumed) RR32_04185 SM00883 Chaperonin 10 Kd subunit RR32_04200 SM00849 Metallo-beta-lactamase superfamily RR32_04405 SM00849 Metallo-beta-lactamase superfamily RR32_04430 SM00255 Toll - interleukin 1 - resistance RR32_04580 SM00978 RR32_04580 RR32_04585 SM00382 ATPases associated with a variety of cellular activities RR32_04635 SM00893 Electron transfer flavoprotein domain RR32_04640 SM00893 Electron transfer flavoprotein domain RR32_04645 SM00342 helix_turn_helix, arabinose operon control protein RR32_04650 SM00849 Metallo-beta-lactamase superfamily RR32_04655 SM00434 DNA Topoisomerase IV RR32_04725 SM00382 ATPases associated with a variety of cellular activities RR32_04730 SM00849 Metallo-beta-lactamase superfamily RR32_04845 SM00382 ATPases associated with a variety of cellular activities RR32_04850 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RR32_04855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RR32_04860 SM01211 RR32_04860 RR32_04950 SM00382 ATPases associated with a variety of cellular activities RR32_05000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RR32_05015 SM00838 Elongation factor G C-terminus RR32_05030 SM00358 Double-stranded RNA binding motif RR32_05030 SM00535 Ribonuclease III family RR32_05095 SM00267 diguanylate cyclase RR32_05105 SM00487 DEAD-like helicases superfamily RR32_05105 SM00490 helicase superfamily c-terminal domain RR32_05120 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RR32_05140 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RR32_05240 SM01329 RR32_05240 RR32_05285 SM00880 RR32_05285 RR32_05285 SM01118 RR32_05285 RR32_05315 SM00487 DEAD-like helicases superfamily RR32_05315 SM00490 helicase superfamily c-terminal domain RR32_05370 SM00344 helix_turn_helix ASNC type RR32_05400 SM00382 ATPases associated with a variety of cellular activities RR32_05450 SM00936 Penicillin-binding protein 5, C-terminal domain RR32_05470 SM00257 Lysin motif RR32_05505 SM00052 Putative diguanylate phosphodiesterase RR32_05520 SM00841 Elongation factor P, C-terminal RR32_05520 SM01185 RR32_05520 RR32_05600 SM01092 CO dehydrogenase flavoprotein C-terminal domain RR32_05605 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR32_05615 SM00463 Small MutS-related domain RR32_05655 SM01230 RR32_05655 RR32_05710 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RR32_05720 SM00919 Malic enzyme, NAD binding domain RR32_05720 SM01274 RR32_05720 RR32_05725 SM00052 Putative diguanylate phosphodiesterase RR32_05725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RR32_05725 SM00091 PAS domain RR32_05725 SM00267 diguanylate cyclase RR32_05740 SM00996 S-adenosyl-L-homocysteine hydrolase RR32_05740 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RR32_05760 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_05810 SM00342 helix_turn_helix, arabinose operon control protein RR32_05860 SM00382 ATPases associated with a variety of cellular activities RR32_05880 SM00382 ATPases associated with a variety of cellular activities RR32_06015 SM00232 JAB/MPN domain RR32_06065 SM00479 RR32_06065 RR32_06100 SM00062 Bacterial periplasmic substrate-binding proteins RR32_06115 SM00382 ATPases associated with a variety of cellular activities RR32_06135 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_06170 SM00448 cheY-homologous receiver domain RR32_06170 SM00862 Transcriptional regulatory protein, C terminal RR32_06175 SM00387 Histidine kinase-like ATPases RR32_06175 SM00388 His Kinase A (phosphoacceptor) domain RR32_06235 SM00830 Chorismate mutase type II RR32_06320 SM00357 Cold shock protein domain RR32_06325 SM00487 DEAD-like helicases superfamily RR32_06325 SM00490 helicase superfamily c-terminal domain RR32_06345 SM00855 Phosphoglycerate mutase family RR32_06425 SM00220 Serine/Threonine protein kinases, catalytic domain RR32_06535 SM01034 Sensors of blue-light using FAD RR32_06575 SM00972 Spore Coat Protein U domain RR32_06600 SM00972 Spore Coat Protein U domain RR32_06640 SM00342 helix_turn_helix, arabinose operon control protein RR32_06695 SM00095 Transthyretin RR32_06705 SM00448 cheY-homologous receiver domain RR32_06705 SM00862 Transcriptional regulatory protein, C terminal RR32_06710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RR32_06710 SM00387 Histidine kinase-like ATPases RR32_06710 SM00388 His Kinase A (phosphoacceptor) domain RR32_06750 SM00388 His Kinase A (phosphoacceptor) domain RR32_06755 SM00448 cheY-homologous receiver domain RR32_06755 SM00862 Transcriptional regulatory protein, C terminal RR32_06785 SM00829 Enoylreductase RR32_06820 SM00342 helix_turn_helix, arabinose operon control protein RR32_06870 SM00849 Metallo-beta-lactamase superfamily RR32_06880 SM00382 ATPases associated with a variety of cellular activities RR32_06880 SM00930 RR32_06880 RR32_06895 SM01209 RR32_06895 RR32_06895 SM01210 RR32_06895 RR32_06900 SM00798 AICARFT/IMPCHase bienzyme RR32_06900 SM00851 MGS-like domain RR32_06925 SM01228 RR32_06925 RR32_06945 SM00460 Transglutaminase/protease-like homologues RR32_06955 SM01005 Alanine racemase, C-terminal domain RR32_07065 SM00937 RR32_07065 RR32_07080 SM00062 Bacterial periplasmic substrate-binding proteins RR32_07095 SM00342 helix_turn_helix, arabinose operon control protein RR32_07100 SM00822 RR32_07100 RR32_07115 SM00903 Flavin reductase like domain RR32_07130 SM00905 Dihydroneopterin aldolase RR32_07155 SM00387 Histidine kinase-like ATPases RR32_07155 SM00388 His Kinase A (phosphoacceptor) domain RR32_07160 SM00448 cheY-homologous receiver domain RR32_07160 SM00862 Transcriptional regulatory protein, C terminal RR32_07165 SM01230 RR32_07165 RR32_07245 SM00363 S4 RNA-binding domain RR32_07270 SM00853 MutL C terminal dimerisation domain RR32_07270 SM01340 RR32_07270 RR32_07340 SM00862 Transcriptional regulatory protein, C terminal RR32_07355 SM00382 ATPases associated with a variety of cellular activities RR32_07365 SM00342 helix_turn_helix, arabinose operon control protein RR32_07365 SM00871 Bacterial transcription activator, effector binding domain RR32_07390 SM00972 Spore Coat Protein U domain RR32_07405 SM00972 Spore Coat Protein U domain RR32_07425 SM00830 Chorismate mutase type II RR32_07430 SM00344 helix_turn_helix ASNC type RR32_07535 SM00382 ATPases associated with a variety of cellular activities RR32_07560 SM00831 Cation transporter/ATPase, N-terminus RR32_07575 SM00344 helix_turn_helix ASNC type RR32_07605 SM00822 RR32_07605 RR32_07640 SM00382 ATPases associated with a variety of cellular activities RR32_07680 SM00226 Low molecular weight phosphatase family RR32_07720 SM00972 Spore Coat Protein U domain RR32_07750 SM00878 Biotin carboxylase C-terminal domain RR32_07775 SM00448 cheY-homologous receiver domain RR32_07775 SM01012 RR32_07775 RR32_07795 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RR32_07805 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RR32_07810 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_07825 SM00852 Probable molybdopterin binding domain RR32_07830 SM00852 Probable molybdopterin binding domain RR32_07840 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_07925 SM00382 ATPases associated with a variety of cellular activities RR32_07925 SM00448 cheY-homologous receiver domain RR32_07930 SM00091 PAS domain RR32_07930 SM00387 Histidine kinase-like ATPases RR32_07930 SM00388 His Kinase A (phosphoacceptor) domain RR32_07935 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_07965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RR32_07975 SM00935 Outer membrane protein (OmpH-like) RR32_08005 SM00382 ATPases associated with a variety of cellular activities RR32_08010 SM00363 S4 RNA-binding domain RR32_08035 SM00344 helix_turn_helix ASNC type RR32_08085 SM00052 Putative diguanylate phosphodiesterase RR32_08085 SM00091 PAS domain RR32_08085 SM00267 diguanylate cyclase RR32_08095 SM00347 helix_turn_helix multiple antibiotic resistance protein RR32_08165 SM00116 Domain in cystathionine beta-synthase and other proteins. RR32_08190 SM00382 ATPases associated with a variety of cellular activities RR32_08190 SM00962 SRP54-type protein, GTPase domain RR32_08190 SM00963 SRP54-type protein, helical bundle domain RR32_08255 SM01264 RR32_08255 RR32_08295 SM00859 Semialdehyde dehydrogenase, NAD binding domain RR32_08310 SM00382 ATPases associated with a variety of cellular activities RR32_08310 SM01086 C-terminal, D2-small domain, of ClpB protein RR32_08370 SM01192 RR32_08370 RR32_08370 SM01193 RR32_08370 RR32_08395 SM00882 Coenzyme A transferase RR32_08400 SM00882 Coenzyme A transferase RR32_08410 SM00998 Adenylosuccinate lyase C-terminus RR32_08445 SM00710 Parallel beta-helix repeats RR32_08455 SM00564 beta-propeller repeat RR32_08475 SM00849 Metallo-beta-lactamase superfamily RR32_08480 SM00346 helix_turn_helix isocitrate lyase regulation RR32_08500 SM00855 Phosphoglycerate mutase family RR32_08520 SM00347 helix_turn_helix multiple antibiotic resistance protein RR32_08565 SM00903 Flavin reductase like domain RR32_08570 SM00342 helix_turn_helix, arabinose operon control protein RR32_08610 SM00882 Coenzyme A transferase RR32_08615 SM00882 Coenzyme A transferase RR32_08630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RR32_08645 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_08645 SM00895 RR32_08645 RR32_08700 SM00422 helix_turn_helix, mercury resistance RR32_08780 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_08780 SM00866 RR32_08780 RR32_08860 SM00382 ATPases associated with a variety of cellular activities RR32_08870 SM00342 helix_turn_helix, arabinose operon control protein RR32_08880 SM01400 RR32_08880 RR32_08970 SM00530 Helix-turn-helix XRE-family like proteins RR32_09010 SM01007 Class II Aldolase and Adducin N-terminal domain RR32_09050 SM00829 Enoylreductase RR32_09075 SM00155 Phospholipase D. Active site motifs. RR32_09100 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_09175 SM00923 MbtH-like protein RR32_09180 SM00823 Phosphopantetheine attachment site RR32_09180 SM00824 Thioesterase RR32_09210 SM00382 ATPases associated with a variety of cellular activities RR32_09245 SM00342 helix_turn_helix, arabinose operon control protein RR32_09255 SM00903 Flavin reductase like domain RR32_09280 SM00342 helix_turn_helix, arabinose operon control protein RR32_09295 SM00849 Metallo-beta-lactamase superfamily RR32_09300 SM01034 Sensors of blue-light using FAD RR32_09340 SM00882 Coenzyme A transferase RR32_09345 SM00882 Coenzyme A transferase RR32_09400 SM00567 E-Z type HEAT repeats RR32_09405 SM00382 ATPases associated with a variety of cellular activities RR32_09430 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_09430 SM00866 RR32_09430 RR32_09440 SM00342 helix_turn_helix, arabinose operon control protein RR32_09465 SM00849 Metallo-beta-lactamase superfamily RR32_09470 SM00382 ATPases associated with a variety of cellular activities RR32_09480 SM00829 Enoylreductase RR32_09485 SM00822 RR32_09485 RR32_09500 SM00861 Transketolase, pyrimidine binding domain RR32_09525 SM00267 diguanylate cyclase RR32_09550 SM00382 ATPases associated with a variety of cellular activities RR32_09580 SM00341 Helicase and RNase D C-terminal RR32_09580 SM00474 3'-5' exonuclease RR32_09585 SM00493 RR32_09585 RR32_09635 SM01324 RR32_09635 RR32_09675 SM00382 ATPases associated with a variety of cellular activities RR32_09745 SM00855 Phosphoglycerate mutase family RR32_09800 SM00342 helix_turn_helix, arabinose operon control protein RR32_09810 SM00411 bacterial (prokaryotic) histone like domain RR32_09845 SM00271 DnaJ molecular chaperone homology domain RR32_09860 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RR32_09870 SM00487 DEAD-like helicases superfamily RR32_09870 SM00490 helicase superfamily c-terminal domain RR32_09870 SM00982 RR32_09870 RR32_09870 SM01058 CarD-like/TRCF domain RR32_09925 SM00382 ATPases associated with a variety of cellular activities RR32_09995 SM00342 helix_turn_helix, arabinose operon control protein RR32_10010 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RR32_10020 SM00411 bacterial (prokaryotic) histone like domain RR32_10025 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_10050 SM00986 Uracil DNA glycosylase superfamily RR32_10050 SM00987 UreE urease accessory protein, C-terminal domain RR32_10110 SM00382 ATPases associated with a variety of cellular activities RR32_10125 SM00470 ParB-like nuclease domain RR32_10185 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RR32_10195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RR32_10215 SM00382 ATPases associated with a variety of cellular activities RR32_10225 SM00342 helix_turn_helix, arabinose operon control protein RR32_10245 SM00344 helix_turn_helix ASNC type RR32_10280 SM00867 YceI-like domain RR32_10290 SM00861 Transketolase, pyrimidine binding domain RR32_10320 SM00530 Helix-turn-helix XRE-family like proteins RR32_10340 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_10340 SM00876 Biotin and Thiamin Synthesis associated domain RR32_10380 SM00342 helix_turn_helix, arabinose operon control protein RR32_10430 SM01236 RR32_10430 RR32_10440 SM00563 Phosphate acyltransferases RR32_10450 SM00344 helix_turn_helix ASNC type RR32_10460 SM00382 ATPases associated with a variety of cellular activities RR32_10475 SM00062 Bacterial periplasmic substrate-binding proteins RR32_10510 SM00382 ATPases associated with a variety of cellular activities RR32_10510 SM00930 RR32_10510 RR32_10530 SM00100 Cyclic nucleotide-monophosphate binding domain RR32_10530 SM00419 helix_turn_helix, cAMP Regulatory protein RR32_10565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RR32_10580 SM00342 helix_turn_helix, arabinose operon control protein RR32_10605 SM00870 RR32_10605 RR32_10610 SM00481 DNA polymerase alpha chain like domain RR32_10660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RR32_10690 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_10690 SM00895 RR32_10690 RR32_10715 SM00382 ATPases associated with a variety of cellular activities RR32_10720 SM00062 Bacterial periplasmic substrate-binding proteins RR32_10765 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_10785 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RR32_10835 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_10875 SM00450 Rhodanese Homology Domain RR32_10905 SM00062 Bacterial periplasmic substrate-binding proteins RR32_10910 SM00062 Bacterial periplasmic substrate-binding proteins RR32_10915 SM00382 ATPases associated with a variety of cellular activities RR32_10935 SM00421 helix_turn_helix, Lux Regulon RR32_10935 SM00448 cheY-homologous receiver domain RR32_10940 SM00387 Histidine kinase-like ATPases RR32_10940 SM00388 His Kinase A (phosphoacceptor) domain RR32_10940 SM00448 cheY-homologous receiver domain RR32_10950 SM00344 helix_turn_helix ASNC type RR32_10970 SM00384 DNA binding domain with preference for A/T rich regions RR32_10985 SM01060 RR32_10985 RR32_10990 SM01236 RR32_10990 RR32_11075 SM00878 Biotin carboxylase C-terminal domain RR32_11120 SM00882 Coenzyme A transferase RR32_11125 SM00882 Coenzyme A transferase RR32_11160 SM00346 helix_turn_helix isocitrate lyase regulation RR32_11185 SM00346 helix_turn_helix isocitrate lyase regulation RR32_11225 SM00382 ATPases associated with a variety of cellular activities RR32_11235 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_11235 SM00866 RR32_11235 RR32_11245 SM00346 helix_turn_helix isocitrate lyase regulation RR32_11410 SM00342 helix_turn_helix, arabinose operon control protein RR32_11435 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_11435 SM00895 RR32_11435 RR32_11445 SM01130 RR32_11445 RR32_11460 SM00422 helix_turn_helix, mercury resistance RR32_11525 SM00382 ATPases associated with a variety of cellular activities RR32_11525 SM01086 C-terminal, D2-small domain, of ClpB protein RR32_11600 SM00382 ATPases associated with a variety of cellular activities RR32_11640 SM00796 Allophanate hydrolase subunit 1 RR32_11640 SM00797 Allophanate hydrolase subunit 2 RR32_11640 SM00878 Biotin carboxylase C-terminal domain RR32_11655 SM00829 Enoylreductase RR32_11665 SM00342 helix_turn_helix, arabinose operon control protein RR32_11700 SM00878 Biotin carboxylase C-terminal domain RR32_11705 SM00796 Allophanate hydrolase subunit 1 RR32_11705 SM00797 Allophanate hydrolase subunit 2 RR32_11860 SM00422 helix_turn_helix, mercury resistance RR32_11865 SM00357 Cold shock protein domain RR32_11880 SM00382 ATPases associated with a variety of cellular activities RR32_11885 SM00344 helix_turn_helix ASNC type RR32_11920 SM00972 Spore Coat Protein U domain RR32_11950 SM00344 helix_turn_helix ASNC type RR32_11965 SM00052 Putative diguanylate phosphodiesterase RR32_11995 SM00822 RR32_11995 RR32_12010 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RR32_12010 SM00534 ATPase domain of DNA mismatch repair MUTS family RR32_12055 SM00382 ATPases associated with a variety of cellular activities RR32_12065 SM00382 ATPases associated with a variety of cellular activities RR32_12085 SM00116 Domain in cystathionine beta-synthase and other proteins. RR32_12090 SM00840 RR32_12090 RR32_12165 SM00357 Cold shock protein domain RR32_12185 SM00530 Helix-turn-helix XRE-family like proteins RR32_12235 SM00422 helix_turn_helix, mercury resistance RR32_12295 SM00382 ATPases associated with a variety of cellular activities RR32_12295 SM00487 DEAD-like helicases superfamily RR32_12295 SM00490 helicase superfamily c-terminal domain RR32_12295 SM00847 Helicase associated domain (HA2) Add an annotation RR32_12375 SM00981 RR32_12375 RR32_12390 SM00382 ATPases associated with a variety of cellular activities RR32_12390 SM01086 C-terminal, D2-small domain, of ClpB protein RR32_12410 SM00100 Cyclic nucleotide-monophosphate binding domain RR32_12410 SM00419 helix_turn_helix, cAMP Regulatory protein RR32_12430 SM00788 Adenylosuccinate synthetase RR32_12440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RR32_12445 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RR32_12535 SM00342 helix_turn_helix, arabinose operon control protein RR32_12600 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_12600 SM00895 RR32_12600 RR32_12605 SM00347 helix_turn_helix multiple antibiotic resistance protein RR32_12660 SM00342 helix_turn_helix, arabinose operon control protein RR32_12685 SM00344 helix_turn_helix ASNC type RR32_12700 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_12700 SM00895 RR32_12700 RR32_12770 SM00267 diguanylate cyclase RR32_12780 SM00479 RR32_12780 RR32_12790 SM00320 WD40 repeats RR32_12830 SM00382 ATPases associated with a variety of cellular activities RR32_12850 SM00257 Lysin motif RR32_12855 SM00479 RR32_12855 RR32_12905 SM00422 helix_turn_helix, mercury resistance RR32_12925 SM01011 Aminopeptidase P, N-terminal domain RR32_13000 SM00382 ATPases associated with a variety of cellular activities RR32_13000 SM00464 Found in ATP-dependent protease La (LON) RR32_13020 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR32_13030 SM00478 endonuclease III RR32_13085 SM00988 UreE urease accessory protein, N-terminal domain RR32_13130 SM01091 Transporter associated domain RR32_13225 SM00382 ATPases associated with a variety of cellular activities RR32_13235 SM00947 Carbonic anhydrase RR32_13300 SM01018 B12 binding domain RR32_13320 SM00342 helix_turn_helix, arabinose operon control protein RR32_13410 SM00346 helix_turn_helix isocitrate lyase regulation RR32_13460 SM01322 RR32_13460 RR32_13550 SM01130 RR32_13550 RR32_13610 SM00487 DEAD-like helicases superfamily RR32_13675 SM01004 Delta-aminolevulinic acid dehydratase RR32_13725 SM00382 ATPases associated with a variety of cellular activities RR32_13795 SM00563 Phosphate acyltransferases RR32_13830 SM00843 RR32_13830 RR32_13870 SM00838 Elongation factor G C-terminus RR32_13870 SM00889 Elongation factor G, domain IV RR32_13890 SM00825 Beta-ketoacyl synthase RR32_13950 SM01329 RR32_13950 RR32_14005 SM00400 zinc finger RR32_14005 SM00493 RR32_14005 RR32_14015 SM00028 Tetratricopeptide repeats RR32_14050 SM01400 RR32_14050 RR32_14095 SM00257 Lysin motif RR32_14105 SM00822 RR32_14105 RR32_14110 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RR32_14145 SM00363 S4 RNA-binding domain RR32_14195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RR32_14195 SM00292 breast cancer carboxy-terminal domain RR32_14195 SM00532 Ligase N family RR32_14200 SM00771 ZipA, C-terminal domain (FtsZ-binding) RR32_14210 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_14230 SM00382 ATPases associated with a variety of cellular activities RR32_14230 SM00962 SRP54-type protein, GTPase domain RR32_14230 SM00963 SRP54-type protein, helical bundle domain RR32_14375 SM00894 Excalibur calcium-binding domain RR32_14380 SM00357 Cold shock protein domain RR32_14425 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RR32_14425 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RR32_14430 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RR32_14455 SM00267 diguanylate cyclase RR32_14465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RR32_14465 SM00387 Histidine kinase-like ATPases RR32_14465 SM00388 His Kinase A (phosphoacceptor) domain RR32_14470 SM00448 cheY-homologous receiver domain RR32_14470 SM00862 Transcriptional regulatory protein, C terminal RR32_14620 SM00671 Sel1-like repeats. RR32_14640 SM00903 Flavin reductase like domain RR32_14950 SM00331 Sigma factor PP2C-like phosphatases RR32_14970 SM00347 helix_turn_helix multiple antibiotic resistance protein RR32_14980 SM00382 ATPases associated with a variety of cellular activities RR32_15000 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RR32_15000 SM00474 3'-5' exonuclease RR32_15000 SM00475 5'-3' exonuclease RR32_15000 SM00482 DNA polymerase A domain RR32_15015 SM00977 TilS substrate C-terminal domain RR32_15035 SM00357 Cold shock protein domain RR32_15035 SM00382 ATPases associated with a variety of cellular activities RR32_15035 SM00959 Rho termination factor, N-terminal domain RR32_15045 SM00411 bacterial (prokaryotic) histone like domain RR32_15050 SM00873 B3/4 domain RR32_15050 SM00874 tRNA synthetase B5 domain RR32_15050 SM00896 Ferredoxin-fold anticodon binding domain RR32_15105 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RR32_15150 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RR32_15165 SM00954 Region found in RelA / SpoT proteins RR32_15185 SM00387 Histidine kinase-like ATPases RR32_15185 SM00388 His Kinase A (phosphoacceptor) domain RR32_15185 SM00448 cheY-homologous receiver domain RR32_15225 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RR32_15225 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RR32_15265 SM00899 RR32_15265 RR32_15315 SM00448 cheY-homologous receiver domain RR32_15315 SM00862 Transcriptional regulatory protein, C terminal RR32_15320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RR32_15320 SM00387 Histidine kinase-like ATPases RR32_15320 SM00388 His Kinase A (phosphoacceptor) domain RR32_15325 SM00746 metallochaperone-like domain RR32_15405 SM01236 RR32_15405 RR32_15420 SM00052 Putative diguanylate phosphodiesterase RR32_15420 SM00267 diguanylate cyclase RR32_15465 SM00382 ATPases associated with a variety of cellular activities RR32_15485 SM00479 RR32_15485 RR32_15495 SM00450 Rhodanese Homology Domain RR32_15520 SM00564 beta-propeller repeat RR32_15545 SM00028 Tetratricopeptide repeats RR32_15555 SM00562 RR32_15555 RR32_15565 SM00014 Acid phosphatase homologues RR32_15575 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RR32_15575 SM00245 tail specific protease RR32_15650 SM00382 ATPases associated with a variety of cellular activities RR32_15650 SM00994 ClpX C4-type zinc finger RR32_15650 SM01086 C-terminal, D2-small domain, of ClpB protein RR32_15670 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RR32_15675 SM00917 LeuA allosteric (dimerisation) domain RR32_15690 SM00671 Sel1-like repeats. RR32_15835 SM00360 RNA recognition motif RR32_15855 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RR32_15855 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RR32_15855 SM00493 RR32_15855 RR32_15870 SM00829 Enoylreductase RR32_15880 SM00382 ATPases associated with a variety of cellular activities RR32_15915 SM00859 Semialdehyde dehydrogenase, NAD binding domain RR32_15930 SM00870 RR32_15930 RR32_15940 SM00342 helix_turn_helix, arabinose operon control protein RR32_15945 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_15960 SM01329 RR32_15960 RR32_16010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RR32_16050 SM00363 S4 RNA-binding domain RR32_16055 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_16085 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_16150 SM00849 Metallo-beta-lactamase superfamily RR32_16190 SM00116 Domain in cystathionine beta-synthase and other proteins. RR32_16190 SM01091 Transporter associated domain RR32_16225 SM00487 DEAD-like helicases superfamily RR32_16225 SM00490 helicase superfamily c-terminal domain RR32_16245 SM00271 DnaJ molecular chaperone homology domain RR32_16260 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_16260 SM00322 K homology RNA-binding domain RR32_16265 SM01387 RR32_16265 RR32_16275 SM00382 ATPases associated with a variety of cellular activities RR32_16395 SM00316 Ribosomal protein S1-like RNA-binding domain RR32_16455 SM00967 RNA 2'-O ribose methyltransferase substrate binding RR32_16465 SM00028 Tetratricopeptide repeats RR32_16480 SM00732 Likely ribonuclease with RNase H fold. RR32_16500 SM00346 helix_turn_helix isocitrate lyase regulation RR32_16510 SM00342 helix_turn_helix, arabinose operon control protein RR32_16525 SM00465 GIY-YIG type nucleases (URI domain) RR32_16565 SM00422 helix_turn_helix, mercury resistance RR32_16590 SM00387 Histidine kinase-like ATPases RR32_16630 SM00663 RNA polymerase I subunit A N-terminus RR32_16655 SM00649 Ribosomal protein L11/L12 RR32_16660 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RR32_16660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RR32_16710 SM00240 Forkhead associated domain RR32_16720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RR32_16730 SM00528 Domain in histone-like proteins of HNS family RR32_16760 SM00448 cheY-homologous receiver domain RR32_16760 SM00850 LytTr DNA-binding domain RR32_16850 SM00899 RR32_16850 RR32_16880 SM00421 helix_turn_helix, Lux Regulon RR32_16880 SM00448 cheY-homologous receiver domain RR32_16885 SM00387 Histidine kinase-like ATPases RR32_16885 SM00388 His Kinase A (phosphoacceptor) domain RR32_16890 SM00382 ATPases associated with a variety of cellular activities RR32_16890 SM00448 cheY-homologous receiver domain RR32_16895 SM00245 tail specific protease RR32_16960 SM00938 Nitrogen regulatory protein P-II RR32_16970 SM00382 ATPases associated with a variety of cellular activities RR32_16975 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_16980 SM01007 Class II Aldolase and Adducin N-terminal domain RR32_16985 SM01130 RR32_16985 RR32_17020 SM00434 DNA Topoisomerase IV RR32_17040 SM01091 Transporter associated domain RR32_17055 SM00641 Glycosyl hydrolases family 25 RR32_17075 SM00729 Elongator protein 3, MiaB family, Radical SAM RR32_17085 SM00422 helix_turn_helix, mercury resistance RR32_17215 SM00342 helix_turn_helix, arabinose operon control protein RR32_17235 SM00382 ATPases associated with a variety of cellular activities RR32_17285 SM00382 ATPases associated with a variety of cellular activities RR32_17310 SM00919 Malic enzyme, NAD binding domain RR32_17310 SM01274 RR32_17310 RR32_17315 SM00836 DALR anticodon binding domain RR32_17315 SM01016 Arginyl tRNA synthetase N terminal dom RR32_17435 SM00823 Phosphopantetheine attachment site RR32_17435 SM00824 Thioesterase RR32_17440 SM00823 Phosphopantetheine attachment site RR32_17440 SM01294 RR32_17440 RR32_17455 SM00421 helix_turn_helix, Lux Regulon RR32_17540 SM01005 Alanine racemase, C-terminal domain RR32_17550 SM00344 helix_turn_helix ASNC type RR32_17625 SM00825 Beta-ketoacyl synthase RR32_17665 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_17665 SM00895 RR32_17665 RR32_17685 SM00345 helix_turn_helix gluconate operon transcriptional repressor RR32_17685 SM00895 RR32_17685 RR32_17715 SM00984 UDP binding domain RR32_17780 SM00984 UDP binding domain RR32_17790 SM00226 Low molecular weight phosphatase family RR32_17815 SM00644 RR32_17815 RR32_17895 SM00062 Bacterial periplasmic substrate-binding proteins RR32_17900 SM00062 Bacterial periplasmic substrate-binding proteins RR32_17915 SM00382 ATPases associated with a variety of cellular activities RR32_17935 SM00904 Riboflavin kinase RR32_17960 SM00248 ankyrin repeats RR32_18010 SM00849 Metallo-beta-lactamase superfamily RR32_18030 SM00235 Zinc-dependent metalloprotease RR32_18055 SM01001 AIR carboxylase RR32_18075 SM00014 Acid phosphatase homologues RR32_18145 SM01234 RR32_18145 RR32_18215 SM00530 Helix-turn-helix XRE-family like proteins RR32_18235 SM00530 Helix-turn-helix XRE-family like proteins RR32_18265 SM00671 Sel1-like repeats. RR32_18290 SM00342 helix_turn_helix, arabinose operon control protein RR32_18300 SM00829 Enoylreductase RR32_18340 SM00829 Enoylreductase RR32_18375 SM00829 Enoylreductase RR32_18410 SM00470 ParB-like nuclease domain RR32_18415 SM00098 Alkaline phosphatase homologues RR32_18425 SM00530 Helix-turn-helix XRE-family like proteins RR32_18495 SM00530 Helix-turn-helix XRE-family like proteins RR32_18510 SM01040 BRO family, N-terminal domain RR32_18590 SM00883 Chaperonin 10 Kd subunit RR32_18615 SM00849 Metallo-beta-lactamase superfamily RR32_18670 SM00422 helix_turn_helix, mercury resistance RR32_18680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RR32_18730 SM00857 Resolvase, N terminal domain RR32_18740 SM00671 Sel1-like repeats. RR32_18830 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RR32_18830 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RR32_18830 SM00493 RR32_18830 RR32_18885 SM00470 ParB-like nuclease domain RR32_18980 SM00530 Helix-turn-helix XRE-family like proteins RR32_18985 SM00220 Serine/Threonine protein kinases, catalytic domain RR32_19135 SM00857 Resolvase, N terminal domain RR32_19155 SM00318 Staphylococcal nuclease homologues