locus-tag	class	description
DKP84_00010	COG0592	DNA-directed DNA polymerase activity
DKP84_00065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DKP84_00070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DKP84_00150	COG2233	PERMEase
DKP84_00200	COG2814	Major facilitator Superfamily
DKP84_00205	COG0656	L-ascorbic acid biosynthetic process
DKP84_00235	COG2818	Glycosylase
DKP84_00250	COG1194	a g-specific adenine glycosylase
DKP84_00265	COG5487	UPF0391 membrane protein
DKP84_00270	COG2983	Belongs to the UPF0260 family
DKP84_00275	COG2133	pyrroloquinoline quinone binding
DKP84_00305	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DKP84_00375	COG2188	Transcriptional regulator
DKP84_00440	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DKP84_00450	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DKP84_00560	COG0534	Mate efflux family protein
DKP84_00565	COG0436	Aminotransferase
DKP84_00665	COG3150	esterase
DKP84_00675	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
DKP84_00700	COG2351	hydroxyisourate hydrolase activity
DKP84_00755	COG0708	Exodeoxyribonuclease III
DKP84_00785	COG0189	ligase activity
DKP84_00805	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DKP84_00815	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DKP84_00850	COG2119	membrane
DKP84_00860	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKP84_00860	COG0426	domain, Protein
DKP84_00925	COG0668	transmembrane transport
DKP84_00935	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKP84_00945	COG1522	sequence-specific DNA binding
DKP84_00975	COG3162	membrane
DKP84_00990	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKP84_01010	COG1309	transcriptional regulator
DKP84_01035	COG0789	Transcriptional regulator
DKP84_01050	COG2814	Major facilitator Superfamily
DKP84_01090	COG1012	belongs to the aldehyde dehydrogenase family
DKP84_01100	COG1335	isochorismatase
DKP84_01165	COG0583	DNA-binding transcription factor activity
DKP84_01230	COG1733	regulation of RNA biosynthetic process
DKP84_01260	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DKP84_01265	COG2207	Transcriptional regulator
DKP84_01405	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DKP84_01420	COG2329	Antibiotic biosynthesis monooxygenase
DKP84_01425	COG0697	spore germination
DKP84_01455	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DKP84_01500	COG0745	RESPONSE REGULATOR receiver
DKP84_01515	COG4221	oxidoreductase activity
DKP84_01895	COG1704	LemA family
DKP84_01900	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DKP84_01950	COG0194	GDP metabolic process
DKP84_02000	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DKP84_02010	COG0335	large ribosomal subunit rRNA binding
DKP84_02025	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DKP84_02040	COG5006	permease, DMT superfamily
DKP84_02050	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKP84_02065	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DKP84_02105	COG1192	Involved in chromosome partitioning
DKP84_02135	COG0833	amino acid
DKP84_02145	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DKP84_02245	COG4109	DRTGG domain
DKP84_02250	COG1983	PspC domain protein
DKP84_02310	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DKP84_02320	COG2854	intermembrane phospholipid transfer
DKP84_02330	COG0598	Magnesium transport protein CorA
DKP84_02340	COG0494	nUDIX hydrolase
DKP84_02365	COG2937	Belongs to the GPAT DAPAT family
DKP84_02395	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKP84_02395	COG1017	nitric oxide dioxygenase activity
DKP84_02425	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DKP84_02430	COG0088	Forms part of the polypeptide exit tunnel
DKP84_02530	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DKP84_02540	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DKP84_02565	COG1960	acyl-CoA dehydrogenase activity
DKP84_02570	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DKP84_02600	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DKP84_02605	COG0339	signal peptide processing
DKP84_02660	COG0179	Fumarylacetoacetate (FAA) hydrolase
DKP84_02700	COG1702	phosphate starvation-inducible protein PhoH
DKP84_02740	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DKP84_02745	COG1183	phosphatidylcholine synthase activity
DKP84_02795	COG1309	transcriptional regulator
DKP84_02855	COG2969	positive regulation of protein catabolic process
DKP84_02865	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DKP84_02875	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DKP84_02880	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DKP84_02885	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DKP84_02935	COG2199	diguanylate cyclase activity
DKP84_02990	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKP84_02990	COG3453	Protein conserved in bacteria
DKP84_03005	COG1607	acyl-coa hydrolase
DKP84_03055	COG3781	membrane
DKP84_03065	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DKP84_03070	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DKP84_03080	COG1862	Preprotein translocase
DKP84_03100	COG5002	protein histidine kinase activity
DKP84_03200	COG1960	acyl-CoA dehydrogenase activity
DKP84_03250	COG2096	Adenosyltransferase
DKP84_03350	COG2153	protein acetylation
DKP84_03375	COG2207	Transcriptional regulator
DKP84_03395	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKP84_03425	COG2885	chlorophyll binding
DKP84_03425	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DKP84_03430	COG1690	Belongs to the RtcB family
DKP84_03435	COG0833	amino acid
DKP84_03445	COG2233	PERMEase
DKP84_03465	COG4580	involved in the transport of maltose and maltodextrins
DKP84_03480	COG2094	Belongs to the DNA glycosylase MPG family
DKP84_03550	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKP84_03565	COG3189	MarR family transcriptional regulator
DKP84_03570	COG2824	Alkylphosphonate utilization operon protein PhnA
DKP84_03575	COG3422	double-strand break repair
DKP84_03645	COG5510	response to toxic substance
DKP84_03655	COG2832	Protein of unknown function (DUF454)
DKP84_03710	COG1289	transmembrane transporter activity
DKP84_03735	COG1115	amino acid carrier protein
DKP84_03745	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DKP84_03785	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DKP84_03790	COG1077	Cell shape determining protein MreB Mrl
DKP84_03795	COG1792	Involved in formation and maintenance of cell shape
DKP84_03800	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DKP84_03805	COG0424	maF-like protein
DKP84_03810	COG0424	maF-like protein
DKP84_03815	COG1530	ribonuclease E activity
DKP84_03825	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DKP84_03845	COG2249	NAD(P)H dehydrogenase (quinone) activity
DKP84_03905	COG3046	protein related to deoxyribodipyrimidine photolyase
DKP84_03910	COG2816	NAD+ diphosphatase activity
DKP84_03945	COG1752	Esterase of the alpha-beta hydrolase superfamily
DKP84_03975	COG0745	RESPONSE REGULATOR receiver
DKP84_03980	COG0642	Histidine kinase
DKP84_03990	COG0004	ammonium transporteR
DKP84_03995	COG0583	DNA-binding transcription factor activity
DKP84_04025	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_04040	COG0393	Putative heavy-metal-binding
DKP84_04105	COG1648	precorrin-2 dehydrogenase activity
DKP84_04105	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DKP84_04110	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DKP84_04165	COG2921	Belongs to the UPF0250 family
DKP84_04205	COG2009	succinate dehydrogenase
DKP84_04210	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DKP84_04215	COG1053	succinate dehydrogenase
DKP84_04220	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DKP84_04265	COG2321	neutral zinc metallopeptidase
DKP84_04300	COG0589	response to stress
DKP84_04305	COG0110	maltose O-acetyltransferase activity
DKP84_04320	COG0505	Belongs to the CarA family
DKP84_04595	COG1538	Outer membrane efflux protein
DKP84_04630	COG0778	Nitroreductase
DKP84_04635	COG0300	oxidoreductase activity
DKP84_04655	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DKP84_04685	COG1113	amino acid transport
DKP84_04710	COG1280	lysine exporter protein (LysE YggA)
DKP84_04780	COG1136	(ABC) transporter
DKP84_04800	COG0596	Alpha beta hydrolase
DKP84_04815	COG0628	permease
DKP84_04850	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKP84_04870	COG0823	Involved in the tonB-independent uptake of proteins
DKP84_04895	COG1473	amidohydrolase
DKP84_04920	COG2814	Major facilitator Superfamily
DKP84_04925	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DKP84_04950	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DKP84_04965	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DKP84_04980	COG4625	pathogenesis
DKP84_04985	COG0583	DNA-binding transcription factor activity
DKP84_04990	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DKP84_04995	COG4208	sulfate ABC transporter
DKP84_05000	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DKP84_05010	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DKP84_05015	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DKP84_05040	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKP84_05050	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKP84_05055	COG0481	GTPase activity
DKP84_05070	COG0571	ribonuclease III activity
DKP84_05090	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DKP84_05205	COG2070	2-Nitropropane dioxygenase
DKP84_05235	COG1215	transferase activity, transferring glycosyl groups
DKP84_05260	COG1252	NADH dehydrogenase
DKP84_05315	COG0612	Peptidase, M16
DKP84_05345	COG0352	thiamine-phosphate diphosphorylase activity
DKP84_05400	COG0076	glutamate decarboxylase activity
DKP84_05425	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DKP84_05430	COG0573	inorganic phosphate transmembrane transporter activity
DKP84_05445	COG0616	signal peptide processing
DKP84_05480	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DKP84_05485	COG1686	Belongs to the peptidase S11 family
DKP84_05510	COG0583	DNA-binding transcription factor activity
DKP84_05555	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DKP84_05565	COG2879	small protein
DKP84_05595	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKP84_05650	COG4221	oxidoreductase activity
DKP84_05710	COG1741	Belongs to the pirin family
DKP84_05730	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKP84_05740	COG4604	ABC transporter, ATP-binding protein
DKP84_05745	COG4607	ABC-type enterochelin transport system periplasmic component
DKP84_05770	COG1535	isochorismatase
DKP84_05770	COG3433	isochorismatase activity
DKP84_05795	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
DKP84_05820	COG3739	integral membrane protein
DKP84_05840	COG0302	gtp cyclohydrolase
DKP84_05875	COG0512	Glutamine amidotransferase of anthranilate synthase
DKP84_06280	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DKP84_06315	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DKP84_06320	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DKP84_06325	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKP84_06375	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DKP84_06400	COG0024	Methionine aminopeptidase
DKP84_06445	COG2951	lytic endotransglycosylase activity
DKP84_06505	COG1538	Outer membrane efflux protein
DKP84_06530	COG4215	(ABC) transporter
DKP84_06550	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKP84_06575	COG1720	tRNA m6t6A37 methyltransferase activity
DKP84_06620	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DKP84_06625	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DKP84_06630	COG3139	Protein of unknown function (DUF1315)
DKP84_06635	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DKP84_06645	COG1301	dicarboxylic acid transport
DKP84_06650	COG1960	acyl-CoA dehydrogenase activity
DKP84_06670	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DKP84_06680	COG2195	Cleaves the N-terminal amino acid of tripeptides
DKP84_06710	COG2363	Small membrane protein
DKP84_06740	COG0778	Nitroreductase
DKP84_06770	COG1286	toxin biosynthetic process
DKP84_06800	COG1610	YqeY-like protein
DKP84_06805	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DKP84_06940	COG2351	hydroxyisourate hydrolase activity
DKP84_07030	COG2175	clavaminate synthase activity
DKP84_07035	COG3246	L-lysine catabolic process to acetate
DKP84_07090	COG2814	Major facilitator Superfamily
DKP84_07130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKP84_07150	COG0151	Belongs to the GarS family
DKP84_07160	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DKP84_07225	COG1305	Transglutaminase-like
DKP84_07235	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DKP84_07240	COG0305	Participates in initiation and elongation during chromosome replication
DKP84_07265	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DKP84_07275	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DKP84_07315	COG3658	cytochrome
DKP84_07340	COG0583	DNA-binding transcription factor activity
DKP84_07355	COG2890	protein-(glutamine-N5) methyltransferase activity
DKP84_07380	COG1960	acyl-CoA dehydrogenase activity
DKP84_07400	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DKP84_07415	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DKP84_07430	COG0745	RESPONSE REGULATOR receiver
DKP84_07435	COG0174	glutamine synthetase
DKP84_07465	COG2706	6-phosphogluconolactonase activity
DKP84_07510	COG0583	DNA-binding transcription factor activity
DKP84_07545	COG0802	atpase or kinase
DKP84_07560	COG1923	regulation of RNA biosynthetic process
DKP84_07600	COG4302	ethanolamine ammonia-lyase activity
DKP84_07815	COG0589	response to stress
DKP84_07840	COG1522	sequence-specific DNA binding
DKP84_07925	COG0824	Thioesterase
DKP84_07945	COG1335	isochorismatase
DKP84_07990	COG0069	glutamate synthase activity
DKP84_08030	COG0511	ligase activity, forming carbon-carbon bonds
DKP84_08080	COG1116	anion transmembrane transporter activity
DKP84_08080	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DKP84_08085	COG0745	RESPONSE REGULATOR receiver
DKP84_08120	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DKP84_08135	COG0315	cyclic pyranopterin monophosphate synthase activity
DKP84_08135	COG0521	Mo-molybdopterin cofactor biosynthetic process
DKP84_08150	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKP84_08180	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DKP84_08280	COG0575	Belongs to the CDS family
DKP84_08315	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DKP84_08345	COG1011	Hydrolase
DKP84_08370	COG1113	amino acid transport
DKP84_08390	COG0659	secondary active sulfate transmembrane transporter activity
DKP84_08470	COG0583	DNA-binding transcription factor activity
DKP84_08480	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DKP84_08485	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DKP84_08540	COG4890	Cyd operon protein YbgT
DKP84_08560	COG1585	Membrane protein implicated in regulation of membrane protease activity
DKP84_08625	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DKP84_08655	COG1902	pentaerythritol trinitrate reductase activity
DKP84_08655	COG0446	pyridine nucleotide-disulphide oxidoreductase
DKP84_08700	COG2323	membrane
DKP84_08715	COG4773	Receptor
DKP84_08740	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKP84_08750	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DKP84_08760	COG2271	Major facilitator Superfamily
DKP84_08765	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKP84_08775	COG3485	protocatechuate 3,4-dioxygenase
DKP84_08930	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DKP84_08935	COG0183	Belongs to the thiolase family
DKP84_08940	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKP84_08945	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DKP84_08955	COG4829	muconolactone delta-isomerase
DKP84_08975	COG2186	Transcriptional regulator
DKP84_09000	COG2351	hydroxyisourate hydrolase activity
DKP84_09005	COG2233	PERMEase
DKP84_09015	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKP84_09020	COG2186	Transcriptional regulator
DKP84_09050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKP84_09090	COG3659	wide pore channel activity
DKP84_09095	COG1309	transcriptional regulator
DKP84_09115	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DKP84_09150	COG1902	pentaerythritol trinitrate reductase activity
DKP84_09150	COG0446	pyridine nucleotide-disulphide oxidoreductase
DKP84_09160	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DKP84_09195	COG4638	Rieske (2fe-2S)
DKP84_09200	COG1522	sequence-specific DNA binding
DKP84_09220	COG0477	Major facilitator Superfamily
DKP84_09230	COG1309	transcriptional regulator
DKP84_09250	COG1309	transcriptional regulator
DKP84_09275	COG1902	pentaerythritol trinitrate reductase activity
DKP84_09310	COG1403	HNH endonuclease
DKP84_09315	COG0494	nUDIX hydrolase
DKP84_09375	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKP84_09380	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DKP84_09450	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKP84_09460	COG2084	Dehydrogenase
DKP84_09500	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DKP84_09600	COG1073	alpha beta
DKP84_09610	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_09625	COG2207	Transcriptional regulator
DKP84_09720	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
DKP84_09740	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKP84_09795	COG3250	beta-galactosidase activity
DKP84_09805	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DKP84_09900	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DKP84_09915	COG0667	Aldo Keto reductase
DKP84_10005	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKP84_10010	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DKP84_10015	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKP84_10020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKP84_10050	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKP84_10075	COG1132	(ABC) transporter
DKP84_10155	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DKP84_10205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKP84_10280	COG4149	molybdate abc transporter
DKP84_10285	COG0725	ABC transporter, periplasmic molybdate-binding protein
DKP84_10305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKP84_10305	COG0543	2 iron, 2 sulfur cluster binding
DKP84_10320	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKP84_10335	COG0412	Dienelactone hydrolase
DKP84_10350	COG2207	Transcriptional regulator
DKP84_10360	COG2610	gluconate transmembrane transporter activity
DKP84_10375	COG0583	DNA-binding transcription factor activity
DKP84_10390	COG2031	fatty acid transporter
DKP84_10450	COG3708	Transcriptional regulator
DKP84_10450	COG2207	Transcriptional regulator
DKP84_10485	COG3453	Protein conserved in bacteria
DKP84_10485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKP84_10510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKP84_10515	COG0508	dehydrogenase complex catalyzes the overall conversion of
DKP84_10520	COG0022	dehydrogenase e1 component
DKP84_10530	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DKP84_10545	COG3706	GGDEF domain
DKP84_10575	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DKP84_10605	COG0583	DNA-binding transcription factor activity
DKP84_10610	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DKP84_10680	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DKP84_10710	COG0730	response to heat
DKP84_10735	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DKP84_10780	COG1960	acyl-CoA dehydrogenase activity
DKP84_10785	COG1960	acyl-CoA dehydrogenase activity
DKP84_10800	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DKP84_10805	COG0776	regulation of translation
DKP84_10830	COG0822	iron-sulfur transferase activity
DKP84_10985	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DKP84_10990	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DKP84_11025	COG0776	regulation of translation
DKP84_11110	COG1663	tetraacyldisaccharide 4'-kinase activity
DKP84_11130	COG1475	DNA binding
DKP84_11135	COG1192	Involved in chromosome partitioning
DKP84_11150	COG3178	'Phosphotransferase
DKP84_11200	COG0640	Transcriptional regulator
DKP84_11210	COG3619	membrane
DKP84_11245	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DKP84_11300	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DKP84_11455	COG1522	sequence-specific DNA binding
DKP84_11465	COG1126	abc transporter atp-binding protein
DKP84_11470	COG0765	amino acid transport
DKP84_11475	COG0765	amino acid transport
DKP84_11505	COG1464	Belongs to the NlpA lipoprotein family
DKP84_11520	COG2011	ABC-type metal ion transport system permease component
DKP84_11525	COG0012	GTP binding
DKP84_11665	COG0640	Transcriptional regulator
DKP84_11690	COG0583	DNA-binding transcription factor activity
DKP84_11715	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKP84_11720	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DKP84_11760	COG1271	oxidase subunit
DKP84_11765	COG1294	oxidase, subunit
DKP84_11820	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DKP84_11845	COG1346	cytolysis
DKP84_11925	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKP84_11930	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKP84_11945	COG0765	amino acid transport
DKP84_11990	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DKP84_12010	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_12100	COG1309	transcriptional regulator
DKP84_12115	COG1024	Enoyl-CoA hydratase
DKP84_12170	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DKP84_12175	COG2814	Major facilitator Superfamily
DKP84_12180	COG1960	acyl-CoA dehydrogenase activity
DKP84_12185	COG1024	Enoyl-CoA hydratase
DKP84_12195	COG1250	3-hydroxyacyl-CoA dehydrogenase
DKP84_12220	COG1024	Enoyl-CoA hydratase
DKP84_12250	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DKP84_12300	COG0583	DNA-binding transcription factor activity
DKP84_12340	COG2050	protein possibly involved in aromatic compounds catabolism
DKP84_12370	COG1024	Enoyl-CoA hydratase
DKP84_12390	COG3396	Phenylacetate-CoA oxygenase
DKP84_12395	COG3460	Phenylacetate-CoA oxygenase
DKP84_12410	COG1760	l-serine dehydratase
DKP84_12415	COG0531	amino acid
DKP84_12445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DKP84_12490	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DKP84_12510	COG2807	transmembrane transport
DKP84_12515	COG0590	tRNA wobble adenosine to inosine editing
DKP84_12525	COG0583	DNA-binding transcription factor activity
DKP84_12745	COG1733	regulation of RNA biosynthetic process
DKP84_12770	COG1063	alcohol dehydrogenase
DKP84_12810	COG0038	chloride channel
DKP84_12860	COG3220	belongs to the UPF0276 family
DKP84_12920	COG0702	epimerase
DKP84_12925	COG1733	regulation of RNA biosynthetic process
DKP84_12950	COG1051	belongs to the nudix hydrolase family
DKP84_12990	COG3038	cytochrome b561
DKP84_13065	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DKP84_13080	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DKP84_13095	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DKP84_13105	COG4122	O-methyltransferase activity
DKP84_13135	COG1538	Outer membrane efflux protein
DKP84_13140	COG1137	ATPase activity
DKP84_13145	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DKP84_13210	COG0668	transmembrane transport
DKP84_13255	COG1309	transcriptional regulator
DKP84_13315	COG1560	Kdo2-lipid A biosynthetic process
DKP84_13320	COG1280	lysine exporter protein (LysE YggA)
DKP84_13355	COG1570	exodeoxyribonuclease VII activity
DKP84_13440	COG2871	sodium ion transport
DKP84_13460	COG4638	Rieske (2fe-2S)
DKP84_13465	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DKP84_13470	COG0633	Ferredoxin
DKP84_13470	COG0543	2 iron, 2 sulfur cluster binding
DKP84_13475	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_13505	COG0450	alkyl hydroperoxide reductase
DKP84_13525	COG3634	alkyl hydroperoxide reductase activity
DKP84_13545	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DKP84_13555	COG0625	glutathione transferase activity
DKP84_13645	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DKP84_13680	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DKP84_13710	COG1741	Belongs to the pirin family
DKP84_13730	COG2072	flavoprotein involved in K transport
DKP84_13735	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
DKP84_13740	COG0583	DNA-binding transcription factor activity
DKP84_13750	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKP84_13835	COG2814	Major facilitator Superfamily
DKP84_13885	COG2186	Transcriptional regulator
DKP84_13890	COG2186	Transcriptional regulator
DKP84_13905	COG4948	Mandelate Racemase Muconate Lactonizing
DKP84_13940	COG1113	amino acid transport
DKP84_13960	COG1012	belongs to the aldehyde dehydrogenase family
DKP84_14045	COG2207	Transcriptional regulator
DKP84_14080	COG1570	exodeoxyribonuclease VII activity
DKP84_14120	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DKP84_14130	COG0745	RESPONSE REGULATOR receiver
DKP84_14170	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DKP84_14170	COG0475	glutathione-regulated potassium exporter activity
DKP84_14180	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DKP84_14185	COG1902	pentaerythritol trinitrate reductase activity
DKP84_14190	COG3118	belongs to the thioredoxin family
DKP84_14200	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKP84_14345	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKP84_14350	COG1960	acyl-CoA dehydrogenase activity
DKP84_14370	COG3971	2-oxopent-4-enoate hydratase activity
DKP84_14380	COG3384	dioxygenase
DKP84_14395	COG0179	Fumarylacetoacetate (FAA) hydrolase
DKP84_14640	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKP84_14720	COG0583	DNA-binding transcription factor activity
DKP84_14735	COG0789	Transcriptional regulator
DKP84_14750	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKP84_14820	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DKP84_14830	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DKP84_14910	COG3015	lipoprotein NlpE involved in copper resistance
DKP84_14980	COG1773	rubredoxin
DKP84_14995	COG0583	DNA-binding transcription factor activity
DKP84_15095	COG0306	phosphate transporter
DKP84_15110	COG3959	Transketolase, thiamine diphosphate binding domain
DKP84_15115	COG2271	Major facilitator Superfamily
DKP84_15120	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_15125	COG0583	DNA-binding transcription factor activity
DKP84_15145	COG2223	nitrite transmembrane transporter activity
DKP84_15150	COG2207	Transcriptional regulator
DKP84_15160	COG0242	peptide deformylase activity
DKP84_15165	COG0477	Major facilitator Superfamily
DKP84_15190	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_15195	COG2267	carboxylic ester hydrolase activity
DKP84_15220	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_15245	COG1414	Transcriptional regulator
DKP84_15310	COG1607	acyl-coa hydrolase
DKP84_15330	COG1309	transcriptional regulator
DKP84_15355	COG2040	homocysteine
DKP84_15415	COG1595	DNA-templated transcription, initiation
DKP84_15485	COG0405	Gamma-glutamyltransferase
DKP84_15490	COG2814	Major facilitator Superfamily
DKP84_15515	COG1090	epimerase
DKP84_15535	COG0420	3'-5' exonuclease activity
DKP84_15570	COG0735	belongs to the Fur family
DKP84_15575	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKP84_15600	COG0121	glutamine amidotransferase
DKP84_15630	COG2885	chlorophyll binding
DKP84_15650	COG2894	cell division
DKP84_15680	COG0492	ferredoxin-NADP+ reductase activity
DKP84_15685	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DKP84_15710	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DKP84_15715	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DKP84_15775	COG4638	Rieske (2fe-2S)
DKP84_15795	COG0583	DNA-binding transcription factor activity
DKP84_15815	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKP84_15935	COG0351	phosphomethylpyrimidine kinase
DKP84_15935	COG0352	thiamine-phosphate diphosphorylase activity
DKP84_15935	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DKP84_15965	COG1399	metal-binding, possibly nucleic acid-binding protein
DKP84_15970	COG3101	peptidyl-lysine hydroxylation
DKP84_15975	COG0009	L-threonylcarbamoyladenylate synthase
DKP84_15985	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DKP84_16000	COG4106	trans-aconitate 2-methyltransferase activity
DKP84_16015	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DKP84_16015	COG2226	methyltransferase
DKP84_16015	COG0596	Alpha beta hydrolase
DKP84_16060	COG0730	response to heat
DKP84_16140	COG0489	protein tyrosine kinase activity
DKP84_16190	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DKP84_16225	COG0583	DNA-binding transcription factor activity
DKP84_16245	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DKP84_16250	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKP84_16280	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DKP84_16305	COG2199	diguanylate cyclase activity
DKP84_16320	COG0745	RESPONSE REGULATOR receiver
DKP84_16335	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKP84_16395	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKP84_16430	COG1473	amidohydrolase
DKP84_16465	COG0583	DNA-binding transcription factor activity
DKP84_16490	COG1053	succinate dehydrogenase
DKP84_16525	COG1960	acyl-CoA dehydrogenase activity
DKP84_16530	COG0583	DNA-binding transcription factor activity
DKP84_16535	COG1063	alcohol dehydrogenase
DKP84_16570	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DKP84_16575	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKP84_16605	COG0561	phosphatase activity
DKP84_16610	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DKP84_16635	COG1214	PFAM Peptidase M22, glycoprotease
DKP84_16700	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DKP84_16765	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DKP84_16775	COG1846	Transcriptional regulator
DKP84_16780	COG1764	response to oxidative stress
DKP84_16830	COG0248	Ppx GppA phosphatase
DKP84_16885	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DKP84_16890	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DKP84_16905	COG1238	metal cluster binding
DKP84_16935	COG3028	Belongs to the UPF0307 family
DKP84_16940	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKP84_16970	COG1555	photosystem II stabilization
DKP84_16975	COG3956	TIGRFAM MazG family protein
DKP84_17000	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKP84_17035	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DKP84_17040	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DKP84_17045	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DKP84_17060	COG2814	Major facilitator Superfamily
DKP84_17090	COG0492	ferredoxin-NADP+ reductase activity
DKP84_17110	COG0640	Transcriptional regulator
DKP84_17270	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DKP84_17305	COG0084	hydrolase, TatD family'
DKP84_17340	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DKP84_17345	COG0440	acetolactate synthase activity
DKP84_17370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKP84_17375	COG1136	(ABC) transporter
DKP84_17375	COG0577	efflux transmembrane transporter activity
DKP84_17400	COG1162	GTPase activity
DKP84_17410	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKP84_17450	COG1426	Protein conserved in bacteria
DKP84_17485	COG0793	Belongs to the peptidase S41A family
DKP84_17515	COG3265	gluconokinase activity
DKP84_17525	COG0800	Aldolase
DKP84_17540	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DKP84_17550	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DKP84_17550	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKP84_17600	COG2813	Specifically methylates the guanine in position
DKP84_17600	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DKP84_17700	COG0788	formyltetrahydrofolate deformylase activity
DKP84_17715	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DKP84_17745	COG0724	RNA recognition motif
DKP84_17780	COG0604	alcohol dehydrogenase
DKP84_17785	COG2900	Belongs to the SlyX family
DKP84_17805	COG1560	Kdo2-lipid A biosynthetic process
DKP84_17815	COG1301	dicarboxylic acid transport
DKP84_17870	COG0473	3-isopropylmalate dehydrogenase activity
DKP84_17895	COG0583	DNA-binding transcription factor activity
DKP84_17935	COG0583	DNA-binding transcription factor activity
DKP84_17955	COG2378	regulation of single-species biofilm formation
DKP84_17970	COG1530	ribonuclease E activity
DKP84_17995	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_18000	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DKP84_18065	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DKP84_18070	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKP84_18085	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DKP84_18095	COG0644	oxidoreductase
DKP84_18095	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DKP84_18110	COG4535	Mg2 and Co2 transporter CorC
DKP84_18150	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DKP84_18165	COG0789	Transcriptional regulator
DKP84_18170	COG0598	Magnesium transport protein CorA
DKP84_18220	COG2226	methyltransferase
DKP84_18235	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKP84_18270	COG1006	Multisubunit Na H antiporter MnhC subunit
DKP84_18285	COG2212	antiporter activity
DKP84_18295	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DKP84_18305	COG0195	Participates in both transcription termination and antitermination
DKP84_18355	COG0237	dephospho-CoA kinase activity
DKP84_18365	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKP84_18380	COG0497	DNA recombination
DKP84_18390	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DKP84_18430	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DKP84_18535	COG2056	Na+-H+ antiporter family
DKP84_18605	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DKP84_18635	COG0546	phosphoglycolate phosphatase activity
DKP84_18640	COG1716	ATPase activity
DKP84_18685	COG0181	hydroxymethylbilane synthase activity
DKP84_18755	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DKP84_18765	COG0772	Belongs to the SEDS family
DKP84_18790	COG4974	Belongs to the 'phage' integrase family
DKP84_18835	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DKP84_18890	COG0004	ammonium transporteR
DKP84_18965	COG0606	chelatase, subunit chli
DKP84_18975	COG0235	Class ii aldolase
DKP84_19000	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DKP84_19015	COG0318	PFAM AMP-dependent synthetase and ligase
DKP84_19030	COG2860	membrane
DKP84_19050	COG2814	Major facilitator Superfamily
DKP84_19070	COG0745	RESPONSE REGULATOR receiver
DKP84_19135	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKP84_19205	COG0758	DNA mediated transformation
DKP84_19220	COG1309	transcriptional regulator
DKP84_19245	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DKP84_19250	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DKP84_19260	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DKP84_19300	COG1121	(ABC) transporter
DKP84_19305	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DKP84_19315	COG2837	iron assimilation
DKP84_19380	COG2259	Doxx family
DKP84_19410	COG0271	Belongs to the BolA IbaG family
DKP84_19460	COG3321	synthase
DKP84_19460	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DKP84_19460	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
DKP84_19460	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DKP84_19485	COG3916	Acyl-homoserine-lactone synthase
DKP84_19495	COG1024	Enoyl-CoA hydratase
DKP84_19500	COG1024	Enoyl-CoA hydratase
DKP84_19510	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKP84_19535	COG1113	amino acid transport
DKP84_19580	COG0564	pseudouridine synthase activity
DKP84_19660	COG1051	belongs to the nudix hydrolase family
DKP84_19705	COG1448	Aminotransferase
DKP84_19710	COG0277	FAD linked oxidase domain protein
DKP84_19765	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DKP84_19770	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DKP84_19775	COG1216	Glycosyl transferase, family 2
DKP84_19785	COG1215	transferase activity, transferring glycosyl groups
DKP84_19805	COG0463	Glycosyl transferase, family 2
DKP84_19805	COG1216	Glycosyl transferase, family 2
DKP84_19835	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DKP84_19930	COG0546	phosphoglycolate phosphatase activity
DKP84_19935	COG1028	Short-chain dehydrogenase reductase Sdr
DKP84_19950	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DKP84_19950	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
DKP84_19980	COG1309	transcriptional regulator
DKP84_20010	COG1047	Peptidyl-prolyl cis-trans
DKP84_20050	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DKP84_20115	COG2951	lytic endotransglycosylase activity
DKP84_20135	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DKP84_20190	COG1230	cation diffusion facilitator family transporter
DKP84_20220	COG0230	Belongs to the bacterial ribosomal protein bL34 family