locus-tag class description DKE41_000010 PF02767 DNA polymerase III beta subunit, central domain DKE41_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain DKE41_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain DKE41_000055 PF01521 Iron-sulphur cluster biosynthesis DKE41_000065 PF03702 Anhydro-N-acetylmuramic acid kinase DKE41_000105 PF02798 Glutathione S-transferase, N-terminal domain DKE41_000130 PF00551 Formyl transferase DKE41_000130 PF02911 Formyl transferase, C-terminal domain DKE41_000135 PF00920 Dehydratase family DKE41_000150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_000150 PF03466 LysR substrate binding domain DKE41_000155 PF00860 Permease family DKE41_000160 PF00311 Phosphoenolpyruvate carboxylase DKE41_000195 PF05173 Dihydrodipicolinate reductase, C-terminus DKE41_000195 PF01113 Dihydrodipicolinate reductase, N-terminus DKE41_000205 PF07690 Major Facilitator Superfamily DKE41_000210 PF00248 Aldo/keto reductase family DKE41_000240 PF03352 Methyladenine glycosylase DKE41_000255 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE41_000255 PF00633 Helix-hairpin-helix motif DKE41_000255 PF14815 NUDIX domain DKE41_000255 PF10576 Iron-sulfur binding domain of endonuclease III DKE41_000275 PF03692 Putative zinc- or iron-chelating domain DKE41_000280 PF07995 Glucose / Sorbosone dehydrogenase DKE41_000310 PF00701 Dihydrodipicolinate synthetase family DKE41_000320 PF01758 Sodium Bile acid symporter family DKE41_000325 PF04463 Protein of unknown function (DUF523) DKE41_000330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE41_000365 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE41_000365 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE41_000375 PF00392 Bacterial regulatory proteins, gntR family DKE41_000375 PF07702 UTRA domain DKE41_000385 PF17392 Urocanase C-terminal domain DKE41_000385 PF01175 Urocanase Rossmann-like domain DKE41_000385 PF17391 Urocanase N-terminal domain DKE41_000395 PF00324 Amino acid permease DKE41_000400 PF01979 Amidohydrolase family DKE41_000425 PF01810 LysE type translocator DKE41_000445 PF04608 Phosphatidylglycerophosphatase A DKE41_000450 PF00586 AIR synthase related protein, N-terminal domain DKE41_000450 PF02769 AIR synthase related protein, C-terminal domain DKE41_000455 PF01029 NusB family DKE41_000465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DKE41_000465 PF00925 GTP cyclohydrolase II DKE41_000495 PF02580 D-Tyr-tRNA(Tyr) deacylase DKE41_000500 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKE41_000500 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE41_000525 PF12728 Helix-turn-helix domain DKE41_000525 PF12727 PBP superfamily domain DKE41_000535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_000535 PF00512 His Kinase A (phospho-acceptor) domain DKE41_000535 PF00989 PAS fold DKE41_000535 PF11808 Phosphate regulon sensor protein PhoR DKE41_000560 PF00155 Aminotransferase class I and II DKE41_000565 PF04286 Protein of unknown function (DUF445) DKE41_000615 PF05728 Uncharacterised protein family (UPF0227) DKE41_000625 PF04115 Ureidoglycolate lyase DKE41_000640 PF01494 FAD binding domain DKE41_000650 PF00860 Permease family DKE41_000655 PF00576 HIUase/Transthyretin family DKE41_000750 PF04101 Glycosyltransferase family 28 C-terminal domain DKE41_000750 PF03033 Glycosyltransferase family 28 N-terminal domain DKE41_000760 PF07478 D-ala D-ala ligase C-terminus DKE41_000760 PF01820 D-ala D-ala ligase N-terminus DKE41_000780 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DKE41_000790 PF01551 Peptidase family M23 DKE41_000810 PF01169 Uncharacterized protein family UPF0016 DKE41_000820 PF00258 Flavodoxin DKE41_000820 PF01613 Flavin reductase like domain DKE41_000835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKE41_000835 PF01243 Pyridoxamine 5'-phosphate oxidase DKE41_000865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE41_000890 PF16177 Acetyl-coenzyme A synthetase N-terminus DKE41_000890 PF00501 AMP-binding enzyme DKE41_000890 PF13193 AMP-binding enzyme C-terminal domain DKE41_000895 PF00857 Isochorismatase family DKE41_000900 PF01037 Lrp/AsnC ligand binding domain DKE41_000915 PF00196 Bacterial regulatory proteins, luxR family DKE41_000915 PF00072 Response regulator receiver domain DKE41_000930 PF04341 Protein of unknown function, DUF485 DKE41_000935 PF00474 Sodium:solute symporter family DKE41_000965 PF16925 Tetracyclin repressor-like, C-terminal domain DKE41_000965 PF00440 Bacterial regulatory proteins, tetR family DKE41_000970 PF14765 Polyketide synthase dehydratase DKE41_000970 PF00550 Phosphopantetheine attachment site DKE41_000970 PF08659 KR domain DKE41_000970 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE41_000970 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE41_000970 PF16197 Ketoacyl-synthetase C-terminal extension DKE41_000970 PF00107 Zinc-binding dehydrogenase DKE41_000970 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_000970 PF00698 Acyl transferase domain DKE41_000985 PF00106 short chain dehydrogenase DKE41_000990 PF00376 MerR family regulatory protein DKE41_000990 PF09278 MerR, DNA binding DKE41_001015 PF00436 Single-strand binding protein family DKE41_001055 PF00392 Bacterial regulatory proteins, gntR family DKE41_001055 PF00155 Aminotransferase class I and II DKE41_001060 PF00202 Aminotransferase class-III DKE41_001065 PF00171 Aldehyde dehydrogenase family DKE41_001075 PF00857 Isochorismatase family DKE41_001080 PF05726 Pirin C-terminal cupin domain DKE41_001080 PF02678 Pirin DKE41_001115 PF03466 LysR substrate binding domain DKE41_001115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_001130 PF00440 Bacterial regulatory proteins, tetR family DKE41_001150 PF00248 Aldo/keto reductase family DKE41_001180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE41_001195 PF01638 HxlR-like helix-turn-helix DKE41_001280 PF01381 Helix-turn-helix DKE41_001330 PF02705 K+ potassium transporter DKE41_001400 PF03992 Antibiotic biosynthesis monooxygenase DKE41_001420 PF00977 Histidine biosynthesis protein DKE41_001435 PF00117 Glutamine amidotransferase class-I DKE41_001460 PF00583 Acetyltransferase (GNAT) family DKE41_001495 PF00106 short chain dehydrogenase DKE41_001555 PF01545 Cation efflux family DKE41_001615 PF01795 MraW methylase family DKE41_001685 PF01202 Shikimate kinase DKE41_001690 PF01761 3-dehydroquinate synthase DKE41_001720 PF04011 LemA family DKE41_001740 PF11846 Virulence factor membrane-bound polymerase, C-terminal DKE41_001740 PF04932 O-Antigen ligase DKE41_001740 PF15864 Protein glycosylation ligase DKE41_001745 PF11846 Virulence factor membrane-bound polymerase, C-terminal DKE41_001745 PF15864 Protein glycosylation ligase DKE41_001745 PF04932 O-Antigen ligase DKE41_001760 PF00210 Ferritin-like domain DKE41_001765 PF04324 BFD-like [2Fe-2S] binding domain DKE41_001775 PF01042 Endoribonuclease L-PSP DKE41_001795 PF00625 Guanylate kinase DKE41_001800 PF02401 LytB protein DKE41_001805 PF07963 Prokaryotic N-terminal methylation motif DKE41_001860 PF05239 PRC-barrel domain DKE41_001860 PF01782 RimM N-terminal domain DKE41_001870 PF01245 Ribosomal protein L19 DKE41_001885 PF09157 Pseudouridine synthase II TruB, C-terminal DKE41_001885 PF16198 tRNA pseudouridylate synthase B C-terminal domain DKE41_001885 PF01509 TruB family pseudouridylate synthase (N terminal domain) DKE41_001890 PF01925 Sulfite exporter TauE/SafE DKE41_001900 PF00892 EamA-like transporter family DKE41_001910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE41_001910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE41_001925 PF03992 Antibiotic biosynthesis monooxygenase DKE41_001980 PF08241 Methyltransferase domain DKE41_001990 PF00324 Amino acid permease DKE41_002000 PF00202 Aminotransferase class-III DKE41_002010 PF00171 Aldehyde dehydrogenase family DKE41_002055 PF01177 Asp/Glu/Hydantoin racemase DKE41_002060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_002060 PF03466 LysR substrate binding domain DKE41_002085 PF02091 Glycyl-tRNA synthetase alpha subunit DKE41_002115 PF03061 Thioesterase superfamily DKE41_002115 PF07085 DRTGG domain DKE41_002115 PF00392 Bacterial regulatory proteins, gntR family DKE41_002115 PF00571 CBS domain DKE41_002140 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKE41_002140 PF01488 Shikimate / quinate 5-dehydrogenase DKE41_002140 PF08501 Shikimate dehydrogenase substrate binding domain DKE41_002175 PF00005 ABC transporter DKE41_002180 PF02405 Permease MlaE DKE41_002190 PF05494 MlaC protein DKE41_002235 PF01553 Acyltransferase DKE41_002260 PF02082 Transcriptional regulator DKE41_002265 PF00970 Oxidoreductase FAD-binding domain DKE41_002265 PF00175 Oxidoreductase NAD-binding domain DKE41_002265 PF00042 Globin DKE41_002290 PF00338 Ribosomal protein S10p/S20e DKE41_002295 PF00297 Ribosomal protein L3 DKE41_002300 PF00573 Ribosomal protein L4/L1 family DKE41_002310 PF00181 Ribosomal Proteins L2, RNA binding domain DKE41_002310 PF03947 Ribosomal Proteins L2, C-terminal domain DKE41_002315 PF00203 Ribosomal protein S19 DKE41_002330 PF00252 Ribosomal protein L16p/L10e DKE41_002335 PF00831 Ribosomal L29 protein DKE41_002340 PF00366 Ribosomal protein S17 DKE41_002350 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DKE41_002350 PF00467 KOW motif DKE41_002360 PF00253 Ribosomal protein S14p/S29e DKE41_002370 PF00347 Ribosomal protein L6 DKE41_002375 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE41_002380 PF00333 Ribosomal protein S5, N-terminal domain DKE41_002380 PF03719 Ribosomal protein S5, C-terminal domain DKE41_002385 PF00327 Ribosomal protein L30p/L7e DKE41_002390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE41_002400 PF00444 Ribosomal protein L36 DKE41_002405 PF00416 Ribosomal protein S13/S18 DKE41_002410 PF00411 Ribosomal protein S11 DKE41_002420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DKE41_002420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DKE41_002420 PF01000 RNA polymerase Rpb3/RpoA insert domain DKE41_002435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE41_002435 PF02770 Acyl-CoA dehydrogenase, middle domain DKE41_002435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE41_002440 PF03937 Flavinator of succinate dehydrogenase DKE41_002470 PF09526 Probable metal-binding protein (DUF2387) DKE41_002530 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE41_002540 PF03358 NADPH-dependent FMN reductase DKE41_002565 PF02130 Uncharacterized protein family UPF0054 DKE41_002570 PF02562 PhoH-like protein DKE41_002580 PF01551 Peptidase family M23 DKE41_002580 PF01464 Transglycosylase SLT domain DKE41_002580 PF10145 Phage-related minor tail protein DKE41_002590 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE41_002590 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE41_002610 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DKE41_002615 PF01066 CDP-alcohol phosphatidyltransferase DKE41_002665 PF00440 Bacterial regulatory proteins, tetR family DKE41_002665 PF17932 Tetracyclin repressor-like, C-terminal domain DKE41_002735 PF04386 Stringent starvation protein B DKE41_002740 PF02798 Glutathione S-transferase, N-terminal domain DKE41_002740 PF00043 Glutathione S-transferase, C-terminal domain DKE41_002745 PF00380 Ribosomal protein S9/S16 DKE41_002755 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKE41_002760 PF00398 Ribosomal RNA adenine dimethylase DKE41_002765 PF00398 Ribosomal RNA adenine dimethylase DKE41_002805 PF10518 TAT (twin-arginine translocation) pathway signal sequence DKE41_002805 PF00149 Calcineurin-like phosphoesterase DKE41_002820 PF13689 YfiR/HmsC-like DKE41_002870 PF04273 Putative phosphatase (DUF442) DKE41_002870 PF00753 Metallo-beta-lactamase superfamily DKE41_002875 PF00561 alpha/beta hydrolase fold DKE41_002880 PF00085 Thioredoxin DKE41_002885 PF03061 Thioesterase superfamily DKE41_002920 PF03795 YCII-related domain DKE41_002925 PF04279 Intracellular septation protein A DKE41_002935 PF01062 Bestrophin, RFP-TM, chloride channel DKE41_002945 PF04127 DNA / pantothenate metabolism flavoprotein DKE41_002945 PF02441 Flavoprotein DKE41_002950 PF02355 Protein export membrane protein DKE41_002950 PF07549 SecD/SecF GG Motif DKE41_002960 PF02699 Preprotein translocase subunit DKE41_003050 PF01522 Polysaccharide deacetylase DKE41_003060 PF00534 Glycosyl transferases group 1 DKE41_003060 PF13439 Glycosyltransferase Family 4 DKE41_003130 PF07963 Prokaryotic N-terminal methylation motif DKE41_003130 PF00114 Pilin (bacterial filament) DKE41_003175 PF00512 His Kinase A (phospho-acceptor) domain DKE41_003175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_003175 PF00672 HAMP domain DKE41_003180 PF00072 Response regulator receiver domain DKE41_003180 PF00486 Transcriptional regulatory protein, C terminal DKE41_003220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DKE41_003225 PF00291 Pyridoxal-phosphate dependent enzyme DKE41_003255 PF01039 Carboxyl transferase domain DKE41_003280 PF00753 Metallo-beta-lactamase superfamily DKE41_003300 PF00083 Sugar (and other) transporter DKE41_003300 PF07690 Major Facilitator Superfamily DKE41_003305 PF03006 Haemolysin-III related DKE41_003315 PF13673 Acetyltransferase (GNAT) domain DKE41_003335 PF00108 Thiolase, N-terminal domain DKE41_003335 PF02803 Thiolase, C-terminal domain DKE41_003340 PF12833 Helix-turn-helix domain DKE41_003340 PF02311 AraC-like ligand binding domain DKE41_003350 PF04966 Carbohydrate-selective porin, OprB family DKE41_003360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE41_003360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE41_003370 PF00893 Small Multidrug Resistance protein DKE41_003390 PF13505 Outer membrane protein beta-barrel domain DKE41_003390 PF00691 OmpA family DKE41_003400 PF00324 Amino acid permease DKE41_003420 PF01741 Large-conductance mechanosensitive channel, MscL DKE41_003435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DKE41_003435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DKE41_003435 PF06827 Zinc finger found in FPG and IleRS DKE41_003440 PF02245 Methylpurine-DNA glycosylase (MPG) DKE41_003450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE41_003485 PF04343 Protein of unknown function, DUF488 DKE41_003490 PF03831 PhnA domain DKE41_003490 PF08274 PhnA Zinc-Ribbon DKE41_003520 PF00072 Response regulator receiver domain DKE41_003525 PF00072 Response regulator receiver domain DKE41_003530 PF01584 CheW-like domain DKE41_003540 PF00072 Response regulator receiver domain DKE41_003540 PF01584 CheW-like domain DKE41_003540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_003540 PF01627 Hpt domain DKE41_003560 PF08085 Entericidin EcnA/B family DKE41_003570 PF04304 Protein of unknown function (DUF454) DKE41_003635 PF00881 Nitroreductase family DKE41_003655 PF01235 Sodium:alanine symporter family DKE41_003665 PF13291 ACT domain DKE41_003665 PF00291 Pyridoxal-phosphate dependent enzyme DKE41_003705 PF02686 Glu-tRNAGln amidotransferase C subunit DKE41_003715 PF04085 rod shape-determining protein MreC DKE41_003720 PF04093 rod shape-determining protein MreD DKE41_003725 PF02545 Maf-like protein DKE41_003730 PF10150 Ribonuclease E/G family DKE41_003730 PF00575 S1 RNA binding domain DKE41_003785 PF06719 AraC-type transcriptional regulator N-terminus DKE41_003785 PF12833 Helix-turn-helix domain DKE41_003830 PF01145 SPFH domain / Band 7 family DKE41_003870 PF00486 Transcriptional regulatory protein, C terminal DKE41_003870 PF00072 Response regulator receiver domain DKE41_003885 PF00909 Ammonium Transporter Family DKE41_003915 PF00133 tRNA synthetases class I (I, L, M and V) DKE41_003915 PF08264 Anticodon-binding domain of tRNA DKE41_003915 PF10458 Valyl tRNA synthetase tRNA binding arm DKE41_003945 PF01906 Putative heavy-metal-binding DKE41_003950 PF01906 Putative heavy-metal-binding DKE41_003980 PF00348 Polyprenyl synthetase DKE41_003985 PF00829 Ribosomal prokaryotic L21 protein DKE41_003990 PF01016 Ribosomal L27 protein DKE41_004015 PF00588 SpoU rRNA Methylase family DKE41_004025 PF03358 NADPH-dependent FMN reductase DKE41_004030 PF13520 Amino acid permease DKE41_004035 PF00465 Iron-containing alcohol dehydrogenase DKE41_004050 PF04359 Protein of unknown function (DUF493) DKE41_004080 PF00285 Citrate synthase, C-terminal domain DKE41_004090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE41_004095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE41_004105 PF13085 2Fe-2S iron-sulfur cluster binding domain DKE41_004120 PF16870 2-oxoglutarate dehydrogenase C-terminal DKE41_004120 PF02779 Transketolase, pyrimidine binding domain DKE41_004120 PF16078 2-oxoglutarate dehydrogenase N-terminus DKE41_004120 PF00676 Dehydrogenase E1 component DKE41_004125 PF02817 e3 binding domain DKE41_004125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE41_004125 PF00364 Biotin-requiring enzyme DKE41_004135 PF08442 ATP-grasp domain DKE41_004135 PF00549 CoA-ligase DKE41_004140 PF02629 CoA binding domain DKE41_004140 PF00549 CoA-ligase DKE41_004255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE41_004265 PF00582 Universal stress protein family DKE41_004270 PF00132 Bacterial transferase hexapeptide (six repeats) DKE41_004275 PF01042 Endoribonuclease L-PSP DKE41_004280 PF00440 Bacterial regulatory proteins, tetR family DKE41_004285 PF03449 Transcription elongation factor, N-terminal DKE41_004285 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE41_004295 PF00117 Glutamine amidotransferase class-I DKE41_004295 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKE41_004325 PF06480 FtsH Extracellular DKE41_004325 PF01434 Peptidase family M41 DKE41_004325 PF17862 AAA+ lid domain DKE41_004325 PF00004 ATPase family associated with various cellular activities (AAA) DKE41_004405 PF00781 Diacylglycerol kinase catalytic domain DKE41_004415 PF00166 Chaperonin 10 Kd subunit DKE41_004425 PF01219 Prokaryotic diacylglycerol kinase DKE41_004450 PF01435 Peptidase family M48 DKE41_004475 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE41_004475 PF01464 Transglycosylase SLT domain DKE41_004515 PF13411 MerR HTH family regulatory protein DKE41_004545 PF00665 Integrase core domain DKE41_004545 PF13333 Integrase core domain DKE41_004550 PF13276 HTH-like domain DKE41_004550 PF00665 Integrase core domain DKE41_004550 PF13333 Integrase core domain DKE41_004590 PF02634 FdhD/NarQ family DKE41_004615 PF18073 Rubredoxin metal binding domain DKE41_004625 PF00324 Amino acid permease DKE41_004640 PF01678 Diaminopimelate epimerase DKE41_004650 PF01810 LysE type translocator DKE41_004685 PF13533 Biotin-lipoyl like DKE41_004695 PF00266 Aminotransferase class-V DKE41_004705 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE41_004720 PF00005 ABC transporter DKE41_004735 PF06965 Na+/H+ antiporter 1 DKE41_004735 PF01343 Peptidase family S49 DKE41_004740 PF12697 Alpha/beta hydrolase family DKE41_004745 PF00551 Formyl transferase DKE41_004760 PF11638 DnaA N-terminal domain DKE41_004760 PF08299 Bacterial dnaA protein helix-turn-helix DKE41_004760 PF00308 Bacterial dnaA protein DKE41_004810 PF04052 TolB amino-terminal domain DKE41_004810 PF07676 WD40-like Beta Propeller Repeat DKE41_004820 PF02472 Biopolymer transport protein ExbD/TolR DKE41_004830 PF03061 Thioesterase superfamily DKE41_004840 PF17864 RuvB AAA lid domain DKE41_004840 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKE41_004840 PF05491 RuvB C-terminal winged helix domain DKE41_004855 PF01966 HD domain DKE41_004860 PF02769 AIR synthase related protein, C-terminal domain DKE41_004860 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DKE41_004860 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DKE41_004900 PF00578 AhpC/TSA family DKE41_004915 PF06508 Queuosine biosynthesis protein QueC DKE41_004940 PF00005 ABC transporter DKE41_004940 PF12857 TOBE-like domain DKE41_004950 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_004970 PF02618 YceG-like family DKE41_004975 PF02223 Thymidylate kinase DKE41_004985 PF00890 FAD binding domain DKE41_004985 PF02910 Fumarate reductase flavoprotein C-term DKE41_005040 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKE41_005075 PF00892 EamA-like transporter family DKE41_005100 PF17757 UvrB interaction domain DKE41_005100 PF12344 Ultra-violet resistance protein B DKE41_005100 PF00271 Helicase conserved C-terminal domain DKE41_005100 PF04851 Type III restriction enzyme, res subunit DKE41_005100 PF02151 UvrB/uvrC motif DKE41_005115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKE41_005115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKE41_005130 PF01926 50S ribosome-binding GTPase DKE41_005130 PF01018 GTP1/OBG DKE41_005135 PF01472 PUA domain DKE41_005135 PF00696 Amino acid kinase family DKE41_005155 PF03060 Nitronate monooxygenase DKE41_005200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE41_005205 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_005210 PF07943 Penicillin-binding protein 5, C-terminal domain DKE41_005210 PF00768 D-alanyl-D-alanine carboxypeptidase DKE41_005225 PF00849 RNA pseudouridylate synthase DKE41_005255 PF02567 Phenazine biosynthesis-like protein DKE41_005285 PF02581 Thiamine monophosphate synthase DKE41_005300 PF00849 RNA pseudouridylate synthase DKE41_005340 PF00282 Pyridoxal-dependent decarboxylase conserved domain DKE41_005345 PF00171 Aldehyde dehydrogenase family DKE41_005355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE41_005355 PF00205 Thiamine pyrophosphate enzyme, central domain DKE41_005355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE41_005365 PF12849 PBP superfamily domain DKE41_005370 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_005385 PF01343 Peptidase family S49 DKE41_005385 PF08496 Peptidase family S49 N-terminal DKE41_005390 PF17961 Bacterial Ig domain DKE41_005390 PF00746 LPXTG cell wall anchor motif DKE41_005390 PF17210 SdrD B-like domain DKE41_005390 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DKE41_005390 PF04650 YSIRK type signal peptide DKE41_005415 PF00293 NUDIX domain DKE41_005415 PF13344 Haloacid dehalogenase-like hydrolase DKE41_005420 PF00132 Bacterial transferase hexapeptide (six repeats) DKE41_005425 PF00768 D-alanyl-D-alanine carboxypeptidase DKE41_005425 PF07943 Penicillin-binding protein 5, C-terminal domain DKE41_005440 PF01975 Survival protein SurE DKE41_005445 PF01476 LysM domain DKE41_005445 PF01551 Peptidase family M23 DKE41_005455 PF05362 Lon protease (S16) C-terminal proteolytic domain DKE41_005455 PF13654 AAA domain DKE41_005465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE41_005475 PF01197 Ribosomal protein L31 DKE41_005500 PF02554 Carbon starvation protein CstA DKE41_005500 PF13722 5TM C-terminal transporter carbon starvation CstA DKE41_005585 PF08348 YheO-like PAS domain DKE41_005585 PF13309 HTH domain DKE41_005595 PF02678 Pirin DKE41_005595 PF17954 Quercetinase C-terminal cupin domain DKE41_005625 PF00005 ABC transporter DKE41_005640 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DKE41_005650 PF00501 AMP-binding enzyme DKE41_005650 PF13193 AMP-binding enzyme C-terminal domain DKE41_005675 PF00664 ABC transporter transmembrane region DKE41_005675 PF00005 ABC transporter DKE41_005680 PF00975 Thioesterase domain DKE41_005710 PF05675 Protein of unknown function (DUF817) DKE41_005740 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DKE41_005740 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DKE41_005760 PF02885 Glycosyl transferase family, helical bundle domain DKE41_005760 PF00591 Glycosyl transferase family, a/b domain DKE41_005765 PF00117 Glutamine amidotransferase class-I DKE41_005825 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE41_005825 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE41_005830 PF01784 NIF3 (NGG1p interacting factor 3) DKE41_005840 PF01743 Poly A polymerase head domain DKE41_005840 PF12627 Probable RNA and SrmB- binding site of polymerase A DKE41_005845 PF01515 Phosphate acetyl/butaryl transferase DKE41_005845 PF03949 Malic enzyme, NAD binding domain DKE41_005845 PF00390 Malic enzyme, N-terminal domain DKE41_005855 PF04452 RNA methyltransferase DKE41_005860 PF02219 Methylenetetrahydrofolate reductase DKE41_005865 PF05221 S-adenosyl-L-homocysteine hydrolase DKE41_005865 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DKE41_005885 PF04055 Radical SAM superfamily DKE41_005920 PF00889 Elongation factor TS DKE41_005950 PF03330 Lytic transglycolase DKE41_005950 PF05036 Sporulation related domain DKE41_005960 PF01098 Cell cycle protein DKE41_005975 PF01061 ABC-2 type transporter DKE41_006015 PF02321 Outer membrane efflux protein DKE41_006030 PF03466 LysR substrate binding domain DKE41_006030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_006045 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_006055 PF00893 Small Multidrug Resistance protein DKE41_006060 PF00037 4Fe-4S binding domain DKE41_006075 PF02567 Phenazine biosynthesis-like protein DKE41_006080 PF00175 Oxidoreductase NAD-binding domain DKE41_006080 PF00970 Oxidoreductase FAD-binding domain DKE41_006095 PF00437 Type II/IV secretion system protein DKE41_006140 PF07023 Protein of unknown function (DUF1315) DKE41_006145 PF00591 Glycosyl transferase family, a/b domain DKE41_006145 PF02885 Glycosyl transferase family, helical bundle domain DKE41_006155 PF00375 Sodium:dicarboxylate symporter family DKE41_006180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DKE41_006195 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain DKE41_006195 PF01137 RNA 3'-terminal phosphate cyclase DKE41_006210 PF01139 tRNA-splicing ligase RtcB DKE41_006230 PF03883 Peroxide stress protein YaaA DKE41_006240 PF05690 Thiazole biosynthesis protein ThiG DKE41_006255 PF04545 Sigma-70, region 4 DKE41_006255 PF04542 Sigma-70 region 2 DKE41_006255 PF00140 Sigma-70 factor, region 1.2 DKE41_006265 PF00313 'Cold-shock' DNA-binding domain DKE41_006270 PF00271 Helicase conserved C-terminal domain DKE41_006270 PF00270 DEAD/DEAH box helicase DKE41_006285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKE41_006285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKE41_006310 PF02674 Colicin V production protein DKE41_006340 PF09424 Yqey-like protein DKE41_006370 PF03793 PASTA domain DKE41_006370 PF00069 Protein kinase domain DKE41_006410 PF00561 alpha/beta hydrolase fold DKE41_006455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_006455 PF03466 LysR substrate binding domain DKE41_006465 PF04403 Paraquat-inducible protein A DKE41_006470 PF02470 MlaD protein DKE41_006480 PF00576 HIUase/Transthyretin family DKE41_006490 PF00486 Transcriptional regulatory protein, C terminal DKE41_006490 PF00072 Response regulator receiver domain DKE41_006495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_006495 PF00512 His Kinase A (phospho-acceptor) domain DKE41_006495 PF00672 HAMP domain DKE41_006535 PF00512 His Kinase A (phospho-acceptor) domain DKE41_006535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_006535 PF08521 Two-component sensor kinase N-terminal DKE41_006540 PF00486 Transcriptional regulatory protein, C terminal DKE41_006540 PF00072 Response regulator receiver domain DKE41_006555 PF01177 Asp/Glu/Hydantoin racemase DKE41_006595 PF00753 Metallo-beta-lactamase superfamily DKE41_006595 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKE41_006605 PF00005 ABC transporter DKE41_006605 PF09383 NIL domain DKE41_006615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DKE41_006615 PF02844 Phosphoribosylglycinamide synthetase, N domain DKE41_006615 PF02843 Phosphoribosylglycinamide synthetase, C domain DKE41_006620 PF01808 AICARFT/IMPCHase bienzyme DKE41_006620 PF02142 MGS-like domain DKE41_006675 PF01168 Alanine racemase, N-terminal domain DKE41_006675 PF00842 Alanine racemase, C-terminal domain DKE41_006680 PF03796 DnaB-like helicase C terminal domain DKE41_006680 PF00772 DnaB-like helicase N terminal domain DKE41_006685 PF01281 Ribosomal protein L9, N-terminal domain DKE41_006685 PF03948 Ribosomal protein L9, C-terminal domain DKE41_006690 PF01084 Ribosomal protein S18 DKE41_006695 PF01250 Ribosomal protein S6 DKE41_006700 PF01040 UbiA prenyltransferase family DKE41_006715 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKE41_006735 PF03618 Kinase/pyrophosphorylase DKE41_006755 PF13994 PgaD-like protein DKE41_006790 PF03462 PCRF domain DKE41_006790 PF00472 RF-1 domain DKE41_006795 PF13847 Methyltransferase domain DKE41_006795 PF17827 PrmC N-terminal domain DKE41_006825 PF01613 Flavin reductase like domain DKE41_006830 PF00899 ThiF family DKE41_006835 PF03109 ABC1 family DKE41_006860 PF02669 K+-transporting ATPase, c chain DKE41_006885 PF03232 Ubiquinone biosynthesis protein COQ7 DKE41_006895 PF01103 Surface antigen DKE41_006895 PF07244 Surface antigen variable number repeat DKE41_006895 PF17243 POTRA domain TamA domain 1 DKE41_006980 PF04284 Protein of unknown function (DUF441) DKE41_006990 PF01479 S4 domain DKE41_006990 PF00849 RNA pseudouridylate synthase DKE41_007045 PF00149 Calcineurin-like phosphoesterase DKE41_007065 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DKE41_007075 PF13520 Amino acid permease DKE41_007095 PF00465 Iron-containing alcohol dehydrogenase DKE41_007110 PF06445 GyrI-like small molecule binding domain DKE41_007115 PF02110 Hydroxyethylthiazole kinase family DKE41_007130 PF01433 Peptidase family M1 domain DKE41_007130 PF11940 Domain of unknown function (DUF3458) Ig-like fold DKE41_007130 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DKE41_007280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_007280 PF03466 LysR substrate binding domain DKE41_007315 PF04151 Bacterial pre-peptidase C-terminal domain DKE41_007325 PF00582 Universal stress protein family DKE41_007350 PF01037 Lrp/AsnC ligand binding domain DKE41_007355 PF01810 LysE type translocator DKE41_007365 PF03466 LysR substrate binding domain DKE41_007365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_007460 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE41_007505 PF00577 Outer membrane usher protein DKE41_007505 PF13954 PapC N-terminal domain DKE41_007505 PF13953 PapC C-terminal domain DKE41_007525 PF02785 Biotin carboxylase C-terminal domain DKE41_007525 PF00289 Biotin carboxylase, N-terminal domain DKE41_007525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE41_007530 PF00364 Biotin-requiring enzyme DKE41_007535 PF01220 Dehydroquinase class II DKE41_007555 PF04183 IucA / IucC family DKE41_007555 PF06276 Ferric iron reductase FhuF-like transporter DKE41_007560 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DKE41_007595 PF00593 TonB dependent receptor DKE41_007595 PF07715 TonB-dependent Receptor Plug Domain DKE41_007620 PF04324 BFD-like [2Fe-2S] binding domain DKE41_007620 PF13806 Rieske-like [2Fe-2S] domain DKE41_007620 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_007620 PF18267 Rubredoxin NAD+ reductase C-terminal domain DKE41_007620 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE41_007620 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE41_007640 PF01568 Molydopterin dinucleotide binding domain DKE41_007640 PF00384 Molybdopterin oxidoreductase DKE41_007640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DKE41_007650 PF04055 Radical SAM superfamily DKE41_007650 PF06463 Molybdenum Cofactor Synthesis C DKE41_007660 PF02391 MoaE protein DKE41_007665 PF00994 Probable molybdopterin binding domain DKE41_007665 PF01967 MoaC family DKE41_007675 PF01638 HxlR-like helix-turn-helix DKE41_007680 PF00392 Bacterial regulatory proteins, gntR family DKE41_007680 PF00155 Aminotransferase class I and II DKE41_007705 PF02635 DsrE/DsrF-like family DKE41_007710 PF16363 GDP-mannose 4,6 dehydratase DKE41_007725 PF00561 alpha/beta hydrolase fold DKE41_007755 PF02542 YgbB family DKE41_007765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKE41_007765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKE41_007770 PF00440 Bacterial regulatory proteins, tetR family DKE41_007790 PF18693 TRAM domain DKE41_007790 PF00919 Uncharacterized protein family UPF0004 DKE41_007790 PF04055 Radical SAM superfamily DKE41_007800 PF01765 Ribosome recycling factor DKE41_007805 PF01255 Putative undecaprenyl diphosphate synthase DKE41_007815 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DKE41_007815 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DKE41_007815 PF13288 DXP reductoisomerase C-terminal domain DKE41_007835 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DKE41_007835 PF00132 Bacterial transferase hexapeptide (six repeats) DKE41_007840 PF07977 FabA-like domain DKE41_007860 PF02631 RecX family DKE41_007870 PF01479 S4 domain DKE41_007890 PF01037 Lrp/AsnC ligand binding domain DKE41_007900 PF00324 Amino acid permease DKE41_007955 PF02378 Phosphotransferase system, EIIC DKE41_007955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DKE41_007960 PF00294 pfkB family carbohydrate kinase DKE41_007985 PF03928 Haem-degrading DKE41_007990 PF05525 Branched-chain amino acid transport protein DKE41_008010 PF00462 Glutaredoxin DKE41_008015 PF00202 Aminotransferase class-III DKE41_008020 PF01380 SIS domain DKE41_008020 PF00571 CBS domain DKE41_008070 PF08173 Membrane bound YbgT-like protein DKE41_008075 PF02322 Cytochrome bd terminal oxidase subunit II DKE41_008235 PF04239 Protein of unknown function (DUF421) DKE41_008250 PF04977 Septum formation initiator DKE41_008255 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DKE41_008265 PF01144 Coenzyme A transferase DKE41_008270 PF00108 Thiolase, N-terminal domain DKE41_008270 PF02803 Thiolase, C-terminal domain DKE41_008285 PF07690 Major Facilitator Superfamily DKE41_008290 PF02627 Carboxymuconolactone decarboxylase family DKE41_008300 PF00775 Dioxygenase DKE41_008330 PF04143 Sulphur transport DKE41_008345 PF01614 Bacterial transcriptional regulator DKE41_008345 PF09339 IclR helix-turn-helix domain DKE41_008370 PF00106 short chain dehydrogenase DKE41_008390 PF01425 Amidase DKE41_008430 PF01613 Flavin reductase like domain DKE41_008480 PF04444 Catechol dioxygenase N terminus DKE41_008480 PF00775 Dioxygenase DKE41_008485 PF02426 Muconolactone delta-isomerase DKE41_008505 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE41_008530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_008530 PF03466 LysR substrate binding domain DKE41_008540 PF00866 Ring hydroxylating beta subunit DKE41_008545 PF00355 Rieske [2Fe-2S] domain DKE41_008550 PF00106 short chain dehydrogenase DKE41_008555 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKE41_008580 PF01494 FAD binding domain DKE41_008585 PF00561 alpha/beta hydrolase fold DKE41_008605 PF08359 YsiA-like protein, C-terminal region DKE41_008605 PF00440 Bacterial regulatory proteins, tetR family DKE41_008675 PF01842 ACT domain DKE41_008675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE41_008675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE41_008680 PF03737 Aldolase/RraA DKE41_008705 PF00171 Aldehyde dehydrogenase family DKE41_008740 PF00264 Common central domain of tyrosinase DKE41_008755 PF00005 ABC transporter DKE41_008770 PF14572 Phosphoribosyl synthetase-associated domain DKE41_008770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE41_008775 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE41_008810 PF01425 Amidase DKE41_008845 PF02824 TGS domain DKE41_008845 PF04607 Region found in RelA / SpoT proteins DKE41_008845 PF13291 ACT domain DKE41_008990 PF16970 Type-1 fimbrial protein, A DKE41_009015 PF00107 Zinc-binding dehydrogenase DKE41_009015 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_009060 PF00486 Transcriptional regulatory protein, C terminal DKE41_009060 PF00072 Response regulator receiver domain DKE41_009095 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE41_009100 PF03070 TENA/THI-4/PQQC family DKE41_009105 PF12706 Beta-lactamase superfamily domain DKE41_009110 PF08042 PqqA family DKE41_009130 PF00106 short chain dehydrogenase DKE41_009135 PF00005 ABC transporter DKE41_009135 PF03459 TOBE domain DKE41_009140 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_009155 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKE41_009155 PF00355 Rieske [2Fe-2S] domain DKE41_009160 PF00866 Ring hydroxylating beta subunit DKE41_009165 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE41_009165 PF00175 Oxidoreductase NAD-binding domain DKE41_009165 PF00970 Oxidoreductase FAD-binding domain DKE41_009175 PF14525 AraC-binding-like domain DKE41_009175 PF12833 Helix-turn-helix domain DKE41_009185 PF01613 Flavin reductase like domain DKE41_009200 PF01738 Dienelactone hydrolase family DKE41_009215 PF06719 AraC-type transcriptional regulator N-terminus DKE41_009215 PF12833 Helix-turn-helix domain DKE41_009280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_009280 PF03466 LysR substrate binding domain DKE41_009290 PF01144 Coenzyme A transferase DKE41_009300 PF02803 Thiolase, C-terminal domain DKE41_009300 PF00108 Thiolase, N-terminal domain DKE41_009305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_009305 PF03466 LysR substrate binding domain DKE41_009325 PF10415 Fumarase C C-terminus DKE41_009325 PF00206 Lyase DKE41_009330 PF07715 TonB-dependent Receptor Plug Domain DKE41_009330 PF00593 TonB dependent receptor DKE41_009360 PF01925 Sulfite exporter TauE/SafE DKE41_009365 PF00753 Metallo-beta-lactamase superfamily DKE41_009365 PF04273 Putative phosphatase (DUF442) DKE41_009370 PF00753 Metallo-beta-lactamase superfamily DKE41_009385 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_009385 PF00107 Zinc-binding dehydrogenase DKE41_009390 PF00106 short chain dehydrogenase DKE41_009395 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_009395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE41_009400 PF02817 e3 binding domain DKE41_009400 PF00364 Biotin-requiring enzyme DKE41_009400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE41_009405 PF02780 Transketolase, C-terminal domain DKE41_009405 PF02779 Transketolase, pyrimidine binding domain DKE41_009410 PF00676 Dehydrogenase E1 component DKE41_009415 PF04055 Radical SAM superfamily DKE41_009430 PF00990 Diguanylate cyclase, GGDEF domain DKE41_009430 PF08448 PAS fold DKE41_009445 PF05175 Methyltransferase small domain DKE41_009470 PF05166 YcgL domain DKE41_009495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_009495 PF03466 LysR substrate binding domain DKE41_009505 PF01612 3'-5' exonuclease DKE41_009505 PF00570 HRDC domain DKE41_009525 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE41_009530 PF00561 alpha/beta hydrolase fold DKE41_009545 PF01230 HIT domain DKE41_009570 PF02684 Lipid-A-disaccharide synthetase DKE41_009575 PF07715 TonB-dependent Receptor Plug Domain DKE41_009575 PF00593 TonB dependent receptor DKE41_009600 PF01925 Sulfite exporter TauE/SafE DKE41_009605 PF00793 DAHP synthetase I family DKE41_009630 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DKE41_009675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE41_009675 PF02770 Acyl-CoA dehydrogenase, middle domain DKE41_009675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE41_009680 PF00487 Fatty acid desaturase DKE41_009685 PF12833 Helix-turn-helix domain DKE41_009685 PF12852 Cupin DKE41_009695 PF00216 Bacterial DNA-binding protein DKE41_009710 PF02082 Transcriptional regulator DKE41_009720 PF01592 NifU-like N terminal domain DKE41_009725 PF01521 Iron-sulphur cluster biosynthesis DKE41_009730 PF07743 HSCB C-terminal oligomerisation domain DKE41_009730 PF00226 DnaJ domain DKE41_009740 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE41_009810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKE41_009810 PF00005 ABC transporter DKE41_009820 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_009865 PF02472 Biopolymer transport protein ExbD/TolR DKE41_009880 PF03969 AFG1-like ATPase DKE41_009915 PF00575 S1 RNA binding domain DKE41_009920 PF02224 Cytidylate kinase DKE41_009930 PF14437 MafB19-like deaminase DKE41_009950 PF03934 Type II secretion system (T2SS), protein K DKE41_009960 PF07963 Prokaryotic N-terminal methylation motif DKE41_009960 PF02501 Type II secretion system (T2SS), protein I DKE41_009975 PF01026 TatD related DNase DKE41_009985 PF09115 DNA polymerase III, delta subunit, C terminal DKE41_010010 PF01618 MotA/TolQ/ExbB proton channel family DKE41_010020 PF13614 AAA domain DKE41_010030 PF00483 Nucleotidyl transferase DKE41_010040 PF03968 OstA-like protein DKE41_010040 PF04453 LPS transport system D DKE41_010045 PF00639 PPIC-type PPIASE domain DKE41_010045 PF09312 SurA N-terminal domain DKE41_010050 PF01116 Fructose-bisphosphate aldolase class-II DKE41_010115 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE41_010115 PF12833 Helix-turn-helix domain DKE41_010125 PF02146 Sir2 family DKE41_010130 PF00474 Sodium:solute symporter family DKE41_010135 PF01037 Lrp/AsnC ligand binding domain DKE41_010145 PF04229 GrpB protein DKE41_010160 PF09992 Phosphodiester glycosidase DKE41_010170 PF04264 YceI-like domain DKE41_010180 PF02779 Transketolase, pyrimidine binding domain DKE41_010180 PF02780 Transketolase, C-terminal domain DKE41_010180 PF00456 Transketolase, thiamine diphosphate binding domain DKE41_010185 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKE41_010185 PF02772 S-adenosylmethionine synthetase, central domain DKE41_010185 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKE41_010220 PF02075 Crossover junction endodeoxyribonuclease RuvC DKE41_010225 PF01256 Carbohydrate kinase DKE41_010225 PF03853 YjeF-related protein N-terminus DKE41_010230 PF08331 Domain of unknown function (DUF1730) DKE41_010235 PF06968 Biotin and Thiamin Synthesis associated domain DKE41_010235 PF04055 Radical SAM superfamily DKE41_010250 PF16970 Type-1 fimbrial protein, A DKE41_010275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_010275 PF03466 LysR substrate binding domain DKE41_010290 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DKE41_010325 PF01709 Transcriptional regulator DKE41_010330 PF01037 Lrp/AsnC ligand binding domain DKE41_010340 PF00005 ABC transporter DKE41_010350 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_010380 PF03180 NLPA lipoprotein DKE41_010390 PF09383 NIL domain DKE41_010390 PF00005 ABC transporter DKE41_010430 PF05437 Branched-chain amino acid transport protein (AzlD) DKE41_010440 PF02222 ATP-grasp domain DKE41_010450 PF00155 Aminotransferase class I and II DKE41_010470 PF01641 SelR domain DKE41_010480 PF00375 Sodium:dicarboxylate symporter family DKE41_010515 PF13192 Thioredoxin domain DKE41_010515 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_010535 PF03358 NADPH-dependent FMN reductase DKE41_010550 PF01022 Bacterial regulatory protein, arsR family DKE41_010555 PF03960 ArsC family DKE41_010605 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_010610 PF00005 ABC transporter DKE41_010615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKE41_010650 PF01654 Cytochrome bd terminal oxidase subunit I DKE41_010655 PF02322 Cytochrome bd terminal oxidase subunit II DKE41_010685 PF00698 Acyl transferase domain DKE41_010700 PF01039 Carboxyl transferase domain DKE41_010740 PF04172 LrgB-like family DKE41_010750 PF03466 LysR substrate binding domain DKE41_010750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_010760 PF02798 Glutathione S-transferase, N-terminal domain DKE41_010765 PF03466 LysR substrate binding domain DKE41_010765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_010800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_010800 PF03466 LysR substrate binding domain DKE41_010830 PF00528 Binding-protein-dependent transport system inner membrane component DKE41_010865 PF13404 AsnC-type helix-turn-helix domain DKE41_010865 PF01037 Lrp/AsnC ligand binding domain DKE41_010875 PF00717 Peptidase S24-like DKE41_010900 PF00199 Catalase DKE41_010900 PF06628 Catalase-related immune-responsive DKE41_010900 PF18011 C-terminal domain found in long catalases DKE41_010955 PF07690 Major Facilitator Superfamily DKE41_010975 PF00440 Bacterial regulatory proteins, tetR family DKE41_010980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE41_010980 PF02770 Acyl-CoA dehydrogenase, middle domain DKE41_010980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE41_010990 PF00378 Enoyl-CoA hydratase/isomerase DKE41_011070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKE41_011070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKE41_011070 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DKE41_011075 PF02803 Thiolase, C-terminal domain DKE41_011075 PF00108 Thiolase, N-terminal domain DKE41_011080 PF09339 IclR helix-turn-helix domain DKE41_011095 PF00378 Enoyl-CoA hydratase/isomerase DKE41_011100 PF09339 IclR helix-turn-helix domain DKE41_011105 PF02515 CoA-transferase family III DKE41_011120 PF01810 LysE type translocator DKE41_011135 PF01614 Bacterial transcriptional regulator DKE41_011135 PF09339 IclR helix-turn-helix domain DKE41_011140 PF02525 Flavodoxin-like fold DKE41_011180 PF00132 Bacterial transferase hexapeptide (six repeats) DKE41_011185 PF07848 PaaX-like protein DKE41_011185 PF08223 PaaX-like protein C-terminal domain DKE41_011210 PF00378 Enoyl-CoA hydratase/isomerase DKE41_011220 PF01883 Iron-sulfur cluster assembly protein DKE41_011230 PF06243 Phenylacetic acid degradation B DKE41_011235 PF05138 Phenylacetic acid catabolic protein DKE41_011280 PF00155 Aminotransferase class I and II DKE41_011280 PF00392 Bacterial regulatory proteins, gntR family DKE41_011300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE41_011310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_011310 PF03466 LysR substrate binding domain DKE41_011495 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE41_011520 PF01638 HxlR-like helix-turn-helix DKE41_011525 PF02525 Flavodoxin-like fold DKE41_011545 PF00107 Zinc-binding dehydrogenase DKE41_011545 PF13823 Alcohol dehydrogenase GroES-associated DKE41_011545 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_011555 PF00892 EamA-like transporter family DKE41_011575 PF13276 HTH-like domain DKE41_011575 PF13333 Integrase core domain DKE41_011575 PF00665 Integrase core domain DKE41_011600 PF00654 Voltage gated chloride channel DKE41_011615 PF07286 Protein of unknown function (DUF1445) DKE41_011620 PF03746 LamB/YcsF family DKE41_011630 PF03466 LysR substrate binding domain DKE41_011630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_011640 PF08281 Sigma-70, region 4 DKE41_011640 PF04542 Sigma-70 region 2 DKE41_011650 PF05114 Protein of unknown function (DUF692) DKE41_011715 PF01638 HxlR-like helix-turn-helix DKE41_011740 PF00990 Diguanylate cyclase, GGDEF domain DKE41_011740 PF03707 Bacterial signalling protein N terminal repeat DKE41_011740 PF00563 EAL domain DKE41_011770 PF01292 Prokaryotic cytochrome b561 DKE41_011780 PF01638 HxlR-like helix-turn-helix DKE41_011795 PF02649 Type I GTP cyclohydrolase folE2 DKE41_011815 PF00313 'Cold-shock' DNA-binding domain DKE41_011850 PF13520 Amino acid permease DKE41_011855 PF01636 Phosphotransferase enzyme family DKE41_011865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE41_011865 PF12833 Helix-turn-helix domain DKE41_011870 PF00202 Aminotransferase class-III DKE41_011885 PF11953 Domain of unknown function (DUF3470) DKE41_011885 PF00037 4Fe-4S binding domain DKE41_011895 PF01596 O-methyltransferase DKE41_011930 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKE41_011930 PF00005 ABC transporter DKE41_011935 PF03968 OstA-like protein DKE41_011970 PF00717 Peptidase S24-like DKE41_012010 PF00924 Mechanosensitive ion channel DKE41_012075 PF01202 Shikimate kinase DKE41_012085 PF08241 Methyltransferase domain DKE41_012105 PF00313 'Cold-shock' DNA-binding domain DKE41_012110 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE41_012150 PF02601 Exonuclease VII, large subunit DKE41_012150 PF13742 OB-fold nucleic acid binding domain DKE41_012185 PF09278 MerR, DNA binding DKE41_012185 PF00376 MerR family regulatory protein DKE41_012215 PF00866 Ring hydroxylating beta subunit DKE41_012220 PF00175 Oxidoreductase NAD-binding domain DKE41_012220 PF00970 Oxidoreductase FAD-binding domain DKE41_012220 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE41_012225 PF00106 short chain dehydrogenase DKE41_012255 PF04408 Helicase associated domain (HA2) DKE41_012255 PF00271 Helicase conserved C-terminal domain DKE41_012255 PF11898 Domain of unknown function (DUF3418) DKE41_012255 PF00270 DEAD/DEAH box helicase DKE41_012255 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DKE41_012265 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE41_012265 PF00578 AhpC/TSA family DKE41_012355 PF02798 Glutathione S-transferase, N-terminal domain DKE41_012355 PF00043 Glutathione S-transferase, C-terminal domain DKE41_012415 PF13488 Glycine zipper DKE41_012415 PF00691 OmpA family DKE41_012425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKE41_012425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKE41_012450 PF00004 ATPase family associated with various cellular activities (AAA) DKE41_012450 PF02861 Clp amino terminal domain, pathogenicity island component DKE41_012450 PF17871 AAA lid domain DKE41_012450 PF07724 AAA domain (Cdc48 subfamily) DKE41_012450 PF10431 C-terminal, D2-small domain, of ClpB protein DKE41_012465 PF02566 OsmC-like protein DKE41_012480 PF00248 Aldo/keto reductase family DKE41_012500 PF13393 Histidyl-tRNA synthetase DKE41_012510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKE41_012510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKE41_012515 PF02272 DHHA1 domain DKE41_012515 PF01411 tRNA synthetases class II (A) DKE41_012515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DKE41_012520 PF00589 Phage integrase family DKE41_012520 PF13356 Arm DNA-binding domain DKE41_012630 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DKE41_012795 PF01695 IstB-like ATP binding protein DKE41_012905 PF02599 Global regulator protein family DKE41_012910 PF01351 Ribonuclease HII DKE41_012920 PF01292 Prokaryotic cytochrome b561 DKE41_012930 PF00860 Permease family DKE41_012940 PF17954 Quercetinase C-terminal cupin domain DKE41_012940 PF02678 Pirin DKE41_012945 PF00440 Bacterial regulatory proteins, tetR family DKE41_012945 PF17932 Tetracyclin repressor-like, C-terminal domain DKE41_012955 PF00106 short chain dehydrogenase DKE41_012965 PF04072 Leucine carboxyl methyltransferase DKE41_012975 PF00743 Flavin-binding monooxygenase-like DKE41_012995 PF18381 YcaO cyclodehydratase C-terminal domain DKE41_012995 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DKE41_013025 PF00355 Rieske [2Fe-2S] domain DKE41_013050 PF07690 Major Facilitator Superfamily DKE41_013060 PF00171 Aldehyde dehydrogenase family DKE41_013090 PF07519 Tannase and feruloyl esterase DKE41_013115 PF00171 Aldehyde dehydrogenase family DKE41_013120 PF00813 FliP family DKE41_013130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DKE41_013140 PF07559 Flagellar basal body protein FlaE DKE41_013140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKE41_013140 PF00460 Flagella basal body rod protein DKE41_013145 PF03963 Flagellar hook capping protein - N-terminal region DKE41_013180 PF02049 Flagellar hook-basal body complex protein FliE DKE41_013200 PF02107 Flagellar L-ring protein DKE41_013210 PF00460 Flagella basal body rod protein DKE41_013210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKE41_013235 PF01313 Bacterial export proteins, family 3 DKE41_013280 PF00324 Amino acid permease DKE41_013290 PF00202 Aminotransferase class-III DKE41_013310 PF07729 FCD domain DKE41_013310 PF00392 Bacterial regulatory proteins, gntR family DKE41_013425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_013425 PF03466 LysR substrate binding domain DKE41_013470 PF01979 Amidohydrolase family DKE41_013475 PF00929 Exonuclease DKE41_013500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE41_013500 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_013505 PF00005 ABC transporter DKE41_013505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKE41_013530 PF00929 Exonuclease DKE41_013540 PF00293 NUDIX domain DKE41_013540 PF09297 NADH pyrophosphatase zinc ribbon domain DKE41_013555 PF02021 Uncharacterised protein family UPF0102 DKE41_013575 PF01810 LysE type translocator DKE41_013645 PF01812 5-formyltetrahydrofolate cyclo-ligase family DKE41_013655 PF02590 Predicted SPOUT methyltransferase DKE41_013660 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKE41_013675 PF04060 Putative Fe-S cluster DKE41_013680 PF10576 Iron-sulfur binding domain of endonuclease III DKE41_013680 PF00633 Helix-hairpin-helix motif DKE41_013680 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE41_013690 PF05762 VWA domain containing CoxE-like protein DKE41_013700 PF07728 AAA domain (dynein-related subfamily) DKE41_013750 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE41_013770 PF00699 Urease beta subunit DKE41_013775 PF00547 Urease, gamma subunit DKE41_013780 PF01774 UreD urease accessory protein DKE41_013790 PF04170 NlpE N-terminal domain DKE41_013790 PF17185 NlpE C-terminal OB domain DKE41_013825 PF00009 Elongation factor Tu GTP binding domain DKE41_013860 PF00301 Rubredoxin DKE41_013895 PF00912 Transglycosylase DKE41_013915 PF13472 GDSL-like Lipase/Acylhydrolase family DKE41_013920 PF00484 Carbonic anhydrase DKE41_013940 PF01521 Iron-sulphur cluster biosynthesis DKE41_013940 PF01106 NifU-like domain DKE41_013955 PF03781 Sulfatase-modifying factor enzyme 1 DKE41_013970 PF00291 Pyridoxal-phosphate dependent enzyme DKE41_013975 PF01384 Phosphate transporter family DKE41_013995 PF01263 Aldose 1-epimerase DKE41_014000 PF07690 Major Facilitator Superfamily DKE41_014005 PF12833 Helix-turn-helix domain DKE41_014005 PF02311 AraC-like ligand binding domain DKE41_014015 PF01327 Polypeptide deformylase DKE41_014030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE41_014030 PF00205 Thiamine pyrophosphate enzyme, central domain DKE41_014030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE41_014040 PF03447 Homoserine dehydrogenase, NAD binding domain DKE41_014040 PF01958 Domain of unknown function DUF108 DKE41_014065 PF14759 Reductase C-terminal DKE41_014065 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_014070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE41_014080 PF00355 Rieske [2Fe-2S] domain DKE41_014090 PF00355 Rieske [2Fe-2S] domain DKE41_014100 PF01614 Bacterial transcriptional regulator DKE41_014100 PF09339 IclR helix-turn-helix domain DKE41_014115 PF00378 Enoyl-CoA hydratase/isomerase DKE41_014125 PF00535 Glycosyl transferase family 2 DKE41_014135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE41_014145 PF00375 Sodium:dicarboxylate symporter family DKE41_014165 PF03061 Thioesterase superfamily DKE41_014200 PF06039 Malate:quinone oxidoreductase (Mqo) DKE41_014315 PF07690 Major Facilitator Superfamily DKE41_014325 PF03061 Thioesterase superfamily DKE41_014335 PF01266 FAD dependent oxidoreductase DKE41_014340 PF01370 NAD dependent epimerase/dehydratase family DKE41_014340 PF08338 Domain of unknown function (DUF1731) DKE41_014375 PF01168 Alanine racemase, N-terminal domain DKE41_014390 PF01475 Ferric uptake regulator family DKE41_014395 PF04355 SmpA / OmlA family DKE41_014415 PF01814 Hemerythrin HHE cation binding domain DKE41_014420 PF13230 Glutamine amidotransferases class-II DKE41_014430 PF00696 Amino acid kinase family DKE41_014440 PF00692 dUTPase DKE41_014450 PF13488 Glycine zipper DKE41_014450 PF00691 OmpA family DKE41_014470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE41_014495 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE41_014500 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DKE41_014510 PF00583 Acetyltransferase (GNAT) family DKE41_014595 PF00037 4Fe-4S binding domain DKE41_014600 PF01467 Cytidylyltransferase-like DKE41_014605 PF01668 SmpB protein DKE41_014615 PF03358 NADPH-dependent FMN reductase DKE41_014625 PF00849 RNA pseudouridylate synthase DKE41_014625 PF01479 S4 domain DKE41_014680 PF14572 Phosphoribosyl synthetase-associated domain DKE41_014680 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE41_014685 PF01386 Ribosomal L25p family DKE41_014690 PF01195 Peptidyl-tRNA hydrolase DKE41_014695 PF02261 Aspartate decarboxylase DKE41_014720 PF03070 TENA/THI-4/PQQC family DKE41_014720 PF08543 Phosphomethylpyrimidine kinase DKE41_014720 PF02581 Thiamine monophosphate synthase DKE41_014730 PF00550 Phosphopantetheine attachment site DKE41_014745 PF01783 Ribosomal L32p protein family DKE41_014750 PF02620 Large ribosomal RNA subunit accumulation protein YceD DKE41_014755 PF04315 Elongation factor P hydroxylase DKE41_014760 PF01300 Telomere recombination DKE41_014765 PF02616 Segregation and condensation protein ScpA DKE41_014770 PF04079 Segregation and condensation complex subunit ScpB DKE41_014775 PF00849 RNA pseudouridylate synthase DKE41_014775 PF01479 S4 domain DKE41_014790 PF00155 Aminotransferase class I and II DKE41_014795 PF04055 Radical SAM superfamily DKE41_014795 PF06968 Biotin and Thiamin Synthesis associated domain DKE41_014795 PF00202 Aminotransferase class-III DKE41_014825 PF00210 Ferritin-like domain DKE41_014860 PF03309 Type III pantothenate kinase DKE41_014875 PF01207 Dihydrouridine synthase (Dus) DKE41_014910 PF00692 dUTPase DKE41_014925 PF01048 Phosphorylase superfamily DKE41_014970 PF13533 Biotin-lipoyl like DKE41_014990 PF05552 Conserved TM helix DKE41_015025 PF00361 Proton-conducting membrane transporter DKE41_015035 PF00361 Proton-conducting membrane transporter DKE41_015035 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKE41_015040 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE41_015045 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE41_015050 PF12838 4Fe-4S dicluster domain DKE41_015065 PF10531 SLBB domain DKE41_015065 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKE41_015065 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKE41_015075 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKE41_015075 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKE41_015080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE41_015105 PF00486 Transcriptional regulatory protein, C terminal DKE41_015105 PF00072 Response regulator receiver domain DKE41_015110 PF02867 Ribonucleotide reductase, barrel domain DKE41_015110 PF03477 ATP cone domain DKE41_015110 PF00317 Ribonucleotide reductase, all-alpha domain DKE41_015120 PF00268 Ribonucleotide reductase, small chain DKE41_015140 PF17074 Darcynin, domain of unknown function DKE41_015165 PF01613 Flavin reductase like domain DKE41_015185 PF03466 LysR substrate binding domain DKE41_015185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_015260 PF00440 Bacterial regulatory proteins, tetR family DKE41_015260 PF17932 Tetracyclin repressor-like, C-terminal domain DKE41_015270 PF02515 CoA-transferase family III DKE41_015275 PF07690 Major Facilitator Superfamily DKE41_015290 PF00107 Zinc-binding dehydrogenase DKE41_015290 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_015295 PF00962 Adenosine/AMP deaminase DKE41_015325 PF01960 ArgJ family DKE41_015330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE41_015330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE41_015335 PF00893 Small Multidrug Resistance protein DKE41_015365 PF00834 Ribulose-phosphate 3 epimerase family DKE41_015375 PF00756 Putative esterase DKE41_015390 PF00814 Glycoprotease family DKE41_015450 PF00815 Histidinol dehydrogenase DKE41_015455 PF01634 ATP phosphoribosyltransferase DKE41_015465 PF01722 BolA-like protein DKE41_015520 PF00795 Carbon-nitrogen hydrolase DKE41_015530 PF01047 MarR family DKE41_015535 PF02566 OsmC-like protein DKE41_015565 PF02325 YGGT family DKE41_015585 PF02541 Ppx/GppA phosphatase family DKE41_015590 PF00085 Thioredoxin DKE41_015615 PF01409 tRNA synthetases class II core domain (F) DKE41_015615 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DKE41_015630 PF00453 Ribosomal protein L20 DKE41_015635 PF01632 Ribosomal protein L35 DKE41_015645 PF07690 Major Facilitator Superfamily DKE41_015650 PF09335 SNARE associated Golgi protein DKE41_015655 PF02798 Glutathione S-transferase, N-terminal domain DKE41_015655 PF00043 Glutathione S-transferase, C-terminal domain DKE41_015665 PF05198 Translation initiation factor IF-3, N-terminal domain DKE41_015665 PF00707 Translation initiation factor IF-3, C-terminal domain DKE41_015680 PF04751 Protein of unknown function (DUF615) DKE41_015685 PF00381 PTS HPr component phosphorylation site DKE41_015700 PF02548 Ketopantoate hydroxymethyltransferase DKE41_015775 PF00378 Enoyl-CoA hydratase/isomerase DKE41_015800 PF02233 NAD(P) transhydrogenase beta subunit DKE41_015805 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE41_015810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DKE41_015810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DKE41_015825 PF07690 Major Facilitator Superfamily DKE41_015840 PF02342 TerD domain DKE41_015850 PF02342 TerD domain DKE41_015855 PF02342 TerD domain DKE41_015860 PF01207 Dihydrouridine synthase (Dus) DKE41_015920 PF17932 Tetracyclin repressor-like, C-terminal domain DKE41_015920 PF00440 Bacterial regulatory proteins, tetR family DKE41_015930 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKE41_015930 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKE41_015935 PF10369 Small subunit of acetolactate synthase DKE41_015940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE41_015940 PF00205 Thiamine pyrophosphate enzyme, central domain DKE41_015940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE41_015990 PF00929 Exonuclease DKE41_016005 PF00462 Glutaredoxin DKE41_016010 PF02556 Preprotein translocase subunit SecB DKE41_016070 PF00221 Aromatic amino acid lyase DKE41_016080 PF00535 Glycosyl transferase family 2 DKE41_016095 PF00550 Phosphopantetheine attachment site DKE41_016100 PF00550 Phosphopantetheine attachment site DKE41_016135 PF04551 GcpE protein DKE41_016155 PF00334 Nucleoside diphosphate kinase DKE41_016160 PF04384 Iron-sulphur cluster assembly DKE41_016165 PF01569 PAP2 superfamily DKE41_016175 PF17804 Tail specific protease N-terminal domain DKE41_016175 PF11818 C-terminal domain of tail specific protease (DUF3340) DKE41_016175 PF00595 PDZ domain DKE41_016175 PF03572 Peptidase family S41 DKE41_016180 PF00933 Glycosyl hydrolase family 3 N terminal domain DKE41_016200 PF00171 Aldehyde dehydrogenase family DKE41_016205 PF01202 Shikimate kinase DKE41_016210 PF02447 GntP family permease DKE41_016240 PF05683 Fumarase C-terminus DKE41_016240 PF05681 Fumarate hydratase (Fumerase) DKE41_016290 PF00561 alpha/beta hydrolase fold DKE41_016290 PF07021 Methionine biosynthesis protein MetW DKE41_016300 PF01725 Ham1 family DKE41_016310 PF02416 mttA/Hcf106 family DKE41_016315 PF02416 mttA/Hcf106 family DKE41_016320 PF00902 Sec-independent protein translocase protein (TatC) DKE41_016360 PF00589 Phage integrase family DKE41_016360 PF02899 Phage integrase, N-terminal SAM-like domain DKE41_016420 PF03573 outer membrane porin, OprD family DKE41_016440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_016440 PF03466 LysR substrate binding domain DKE41_016450 PF01546 Peptidase family M20/M25/M40 DKE41_016450 PF07687 Peptidase dimerisation domain DKE41_016455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE41_016460 PF00596 Class II Aldolase and Adducin N-terminal domain DKE41_016475 PF00171 Aldehyde dehydrogenase family DKE41_016480 PF04958 Arginine N-succinyltransferase beta subunit DKE41_016505 PF01037 Lrp/AsnC ligand binding domain DKE41_016520 PF12833 Helix-turn-helix domain DKE41_016525 PF00107 Zinc-binding dehydrogenase DKE41_016525 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_016535 PF00171 Aldehyde dehydrogenase family DKE41_016540 PF01494 FAD binding domain DKE41_016550 PF00303 Thymidylate synthase DKE41_016555 PF00186 Dihydrofolate reductase DKE41_016565 PF01625 Peptide methionine sulfoxide reductase DKE41_016575 PF01618 MotA/TolQ/ExbB proton channel family DKE41_016600 PF00830 Ribosomal L28 family DKE41_016635 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DKE41_016640 PF00580 UvrD/REP helicase N-terminal domain DKE41_016640 PF13361 UvrD-like helicase C-terminal domain DKE41_016665 PF01638 HxlR-like helix-turn-helix DKE41_016670 PF08240 Alcohol dehydrogenase GroES-like domain DKE41_016670 PF00107 Zinc-binding dehydrogenase DKE41_016675 PF04102 SlyX DKE41_016690 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE41_016740 PF01176 Translation initiation factor 1A / IF-1 DKE41_016755 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE41_016770 PF00330 Aconitase family (aconitate hydratase) DKE41_016800 PF00293 NUDIX domain DKE41_016835 PF13280 WYL domain DKE41_016835 PF08279 HTH domain DKE41_016870 PF03466 LysR substrate binding domain DKE41_016870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE41_016880 PF06969 HemN C-terminal domain DKE41_016880 PF04055 Radical SAM superfamily DKE41_016910 PF01197 Ribosomal protein L31 DKE41_016925 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DKE41_016945 PF03884 DNA gyrase inhibitor YacG DKE41_016950 PF00753 Metallo-beta-lactamase superfamily DKE41_016955 PF00762 Ferrochelatase DKE41_016965 PF01177 Asp/Glu/Hydantoin racemase DKE41_016985 PF01206 Sulfurtransferase TusA DKE41_016990 PF03471 Transporter associated domain DKE41_016990 PF00571 CBS domain DKE41_017010 PF07963 Prokaryotic N-terminal methylation motif DKE41_017010 PF08334 Type II secretion system (T2SS), protein G DKE41_017030 PF01430 Hsp33 protein DKE41_017050 PF01544 CorA-like Mg2+ transporter protein DKE41_017060 PF00312 Ribosomal protein S15 DKE41_017080 PF17946 RecC C-terminal domain DKE41_017110 PF03109 ABC1 family DKE41_017120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE41_017150 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE41_017165 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE41_017175 PF02033 Ribosome-binding factor A DKE41_017190 PF02576 RimP N-terminal domain DKE41_017190 PF17384 RimP C-terminal SH3 domain DKE41_017215 PF00121 Triosephosphate isomerase DKE41_017225 PF00482 Type II secretion system (T2SS), protein F DKE41_017230 PF06750 Bacterial Peptidase A24 N-terminal domain DKE41_017230 PF01478 Type IV leader peptidase family DKE41_017245 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE41_017245 PF00588 SpoU rRNA Methylase family DKE41_017260 PF02463 RecF/RecN/SMC N terminal domain DKE41_017270 PF03652 Holliday junction resolvase DKE41_017275 PF13533 Biotin-lipoyl like DKE41_017310 PF01066 CDP-alcohol phosphatidyltransferase DKE41_017360 PF02803 Thiolase, C-terminal domain DKE41_017360 PF00108 Thiolase, N-terminal domain DKE41_017415 PF03553 Na+/H+ antiporter family DKE41_017415 PF13726 Na+-H+ antiporter family DKE41_017440 PF00623 RNA polymerase Rpb1, domain 2 DKE41_017440 PF04997 RNA polymerase Rpb1, domain 1 DKE41_017440 PF04983 RNA polymerase Rpb1, domain 3 DKE41_017440 PF05000 RNA polymerase Rpb1, domain 4 DKE41_017440 PF04998 RNA polymerase Rpb1, domain 5 DKE41_017445 PF04563 RNA polymerase beta subunit DKE41_017445 PF04561 RNA polymerase Rpb2, domain 2 DKE41_017445 PF04565 RNA polymerase Rpb2, domain 3 DKE41_017445 PF10385 RNA polymerase beta subunit external 1 domain DKE41_017445 PF00562 RNA polymerase Rpb2, domain 6 DKE41_017445 PF04560 RNA polymerase Rpb2, domain 7 DKE41_017450 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE41_017450 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE41_017455 PF00466 Ribosomal protein L10 DKE41_017460 PF00687 Ribosomal protein L1p/L10e family DKE41_017465 PF03946 Ribosomal protein L11, N-terminal domain DKE41_017465 PF00298 Ribosomal protein L11, RNA binding domain DKE41_017475 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DKE41_017520 PF13419 Haloacid dehalogenase-like hydrolase DKE41_017525 PF00498 FHA domain DKE41_017525 PF12401 Protein of unknown function (DUF2662) DKE41_017545 PF00816 H-NS histone family DKE41_017590 PF04362 Bacterial Fe(2+) trafficking DKE41_017595 PF01895 PhoU domain DKE41_017610 PF00892 EamA-like transporter family DKE41_017640 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE41_017675 PF00589 Phage integrase family DKE41_017675 PF02899 Phage integrase, N-terminal SAM-like domain DKE41_017685 PF03447 Homoserine dehydrogenase, NAD binding domain DKE41_017685 PF00742 Homoserine dehydrogenase DKE41_017685 PF01842 ACT domain DKE41_017690 PF00291 Pyridoxal-phosphate dependent enzyme DKE41_017695 PF00768 D-alanyl-D-alanine carboxypeptidase DKE41_017705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE41_017705 PF00512 His Kinase A (phospho-acceptor) domain DKE41_017735 PF02789 Cytosol aminopeptidase family, N-terminal domain DKE41_017735 PF00883 Cytosol aminopeptidase family, catalytic domain DKE41_017755 PF00677 Lumazine binding domain DKE41_017765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE41_017765 PF01872 RibD C-terminal domain DKE41_017770 PF03477 ATP cone domain DKE41_017810 PF00701 Dihydrodipicolinate synthetase family DKE41_017825 PF03573 outer membrane porin, OprD family DKE41_017830 PF00719 Inorganic pyrophosphatase DKE41_017855 PF07690 Major Facilitator Superfamily DKE41_017860 PF03458 UPF0126 domain DKE41_017865 PF02810 SEC-C motif DKE41_017880 PF07690 Major Facilitator Superfamily DKE41_017885 PF01183 Glycosyl hydrolases family 25 DKE41_017890 PF11799 impB/mucB/samB family C-terminal domain DKE41_017890 PF11798 IMS family HHH motif DKE41_017890 PF00817 impB/mucB/samB family DKE41_017930 PF03358 NADPH-dependent FMN reductase DKE41_018010 PF17782 DprA winged helix domain DKE41_018010 PF02481 DNA recombination-mediator protein A DKE41_018015 PF01300 Telomere recombination DKE41_018030 PF07690 Major Facilitator Superfamily DKE41_018050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE41_018055 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE41_018055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE41_018060 PF00231 ATP synthase DKE41_018065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE41_018065 PF00306 ATP synthase alpha/beta chain, C terminal domain DKE41_018065 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE41_018075 PF00430 ATP synthase B/B' CF(0) DKE41_018080 PF00137 ATP synthase subunit C DKE41_018110 PF00950 ABC 3 transport family DKE41_018120 PF04261 Dyp-type peroxidase family DKE41_018130 PF00390 Malic enzyme, N-terminal domain DKE41_018130 PF03949 Malic enzyme, NAD binding domain DKE41_018140 PF05746 DALR anticodon binding domain DKE41_018140 PF00750 tRNA synthetases class I (R) DKE41_018140 PF03485 Arginyl tRNA synthetase N terminal domain DKE41_018165 PF12724 Flavodoxin domain DKE41_018175 PF04286 Protein of unknown function (DUF445) DKE41_018180 PF07681 DoxX DKE41_018185 PF09335 SNARE associated Golgi protein DKE41_018210 PF01722 BolA-like protein DKE41_018250 PF00975 Thioesterase domain DKE41_018250 PF00501 AMP-binding enzyme DKE41_018250 PF00668 Condensation domain DKE41_018250 PF00550 Phosphopantetheine attachment site DKE41_018250 PF13193 AMP-binding enzyme C-terminal domain DKE41_018255 PF14765 Polyketide synthase dehydratase DKE41_018255 PF16197 Ketoacyl-synthetase C-terminal extension DKE41_018255 PF08242 Methyltransferase domain DKE41_018255 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE41_018255 PF00975 Thioesterase domain DKE41_018255 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE41_018255 PF00550 Phosphopantetheine attachment site DKE41_018280 PF00765 Autoinducer synthase DKE41_018295 PF00378 Enoyl-CoA hydratase/isomerase DKE41_018305 PF13193 AMP-binding enzyme C-terminal domain DKE41_018305 PF00501 AMP-binding enzyme DKE41_018315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE41_018315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE41_018320 PF00171 Aldehyde dehydrogenase family DKE41_018340 PF01042 Endoribonuclease L-PSP DKE41_018350 PF01266 FAD dependent oxidoreductase DKE41_018355 PF01037 Lrp/AsnC ligand binding domain DKE41_018380 PF00849 RNA pseudouridylate synthase DKE41_018400 PF00440 Bacterial regulatory proteins, tetR family DKE41_018400 PF08361 MAATS-type transcriptional repressor, C-terminal region DKE41_018410 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE41_018410 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE41_018445 PF00285 Citrate synthase, C-terminal domain DKE41_018455 PF00392 Bacterial regulatory proteins, gntR family DKE41_018455 PF07729 FCD domain DKE41_018470 PF01070 FMN-dependent dehydrogenase DKE41_018475 PF07729 FCD domain DKE41_018475 PF00392 Bacterial regulatory proteins, gntR family DKE41_018490 PF16363 GDP-mannose 4,6 dehydratase DKE41_018525 PF01370 NAD dependent epimerase/dehydratase family DKE41_018545 PF08485 Polysaccharide biosynthesis protein C-terminal DKE41_018545 PF02719 Polysaccharide biosynthesis protein DKE41_018625 PF02350 UDP-N-acetylglucosamine 2-epimerase DKE41_018655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DKE41_018655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE41_018670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DKE41_018670 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DKE41_018690 PF04185 Phosphoesterase family DKE41_018690 PF05506 Domain of unknown function (DUF756) DKE41_018695 PF03725 3' exoribonuclease family, domain 2 DKE41_018695 PF01138 3' exoribonuclease family, domain 1 DKE41_018705 PF00175 Oxidoreductase NAD-binding domain DKE41_018720 PF01323 DSBA-like thioredoxin domain DKE41_018730 PF13419 Haloacid dehalogenase-like hydrolase DKE41_018735 PF00106 short chain dehydrogenase DKE41_018780 PF08362 YcdC-like protein, C-terminal region DKE41_018780 PF00440 Bacterial regulatory proteins, tetR family DKE41_018810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE41_018850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE41_018880 PF01025 GrpE DKE41_018935 PF01225 Mur ligase family, catalytic domain DKE41_018935 PF08245 Mur ligase middle domain DKE41_018935 PF02875 Mur ligase family, glutamate ligase domain DKE41_018975 PF00156 Phosphoribosyl transferase domain DKE41_018990 PF16916 Dimerisation domain of Zinc Transporter DKE41_018990 PF01545 Cation efflux family DKE41_019010 PF01809 Putative membrane protein insertion efficiency factor DKE41_019020 PF00468 Ribosomal protein L34 DKE41_019055 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DKE41_019060 PF13302 Acetyltransferase (GNAT) domain DKE41_019135 PF03193 RsgA GTPase DKE41_019195 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DKE41_019200 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system