locus-tag class description DKE42_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain DKE42_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain DKE42_000010 PF02767 DNA polymerase III beta subunit, central domain DKE42_000055 PF01521 Iron-sulphur cluster biosynthesis DKE42_000065 PF03702 Anhydro-N-acetylmuramic acid kinase DKE42_000070 PF00579 tRNA synthetases class I (W and Y) DKE42_000105 PF02798 Glutathione S-transferase, N-terminal domain DKE42_000115 PF00209 Sodium:neurotransmitter symporter family DKE42_000130 PF02911 Formyl transferase, C-terminal domain DKE42_000130 PF00551 Formyl transferase DKE42_000135 PF00920 Dehydratase family DKE42_000155 PF00860 Permease family DKE42_000160 PF00311 Phosphoenolpyruvate carboxylase DKE42_000195 PF01113 Dihydrodipicolinate reductase, N-terminus DKE42_000195 PF05173 Dihydrodipicolinate reductase, C-terminus DKE42_000205 PF07690 Major Facilitator Superfamily DKE42_000210 PF00248 Aldo/keto reductase family DKE42_000230 PF00155 Aminotransferase class I and II DKE42_000230 PF00392 Bacterial regulatory proteins, gntR family DKE42_000240 PF03352 Methyladenine glycosylase DKE42_000255 PF00633 Helix-hairpin-helix motif DKE42_000255 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE42_000255 PF10576 Iron-sulfur binding domain of endonuclease III DKE42_000255 PF14815 NUDIX domain DKE42_000270 PF07043 Protein of unknown function (DUF1328) DKE42_000275 PF03692 Putative zinc- or iron-chelating domain DKE42_000280 PF07995 Glucose / Sorbosone dehydrogenase DKE42_000285 PF16193 AAA C-terminal domain DKE42_000285 PF12002 MgsA AAA+ ATPase C terminal DKE42_000285 PF00004 ATPase family associated with various cellular activities (AAA) DKE42_000290 PF01226 Formate/nitrite transporter DKE42_000300 PF01259 SAICAR synthetase DKE42_000310 PF00701 Dihydrodipicolinate synthetase family DKE42_000315 PF00857 Isochorismatase family DKE42_000320 PF01758 Sodium Bile acid symporter family DKE42_000325 PF01554 MatE DKE42_000360 PF00324 Amino acid permease DKE42_000380 PF00392 Bacterial regulatory proteins, gntR family DKE42_000380 PF07702 UTRA domain DKE42_000390 PF17392 Urocanase C-terminal domain DKE42_000390 PF01175 Urocanase Rossmann-like domain DKE42_000390 PF17391 Urocanase N-terminal domain DKE42_000395 PF00221 Aromatic amino acid lyase DKE42_000400 PF00324 Amino acid permease DKE42_000405 PF01979 Amidohydrolase family DKE42_000420 PF13419 Haloacid dehalogenase-like hydrolase DKE42_000430 PF01810 LysE type translocator DKE42_000455 PF01380 SIS domain DKE42_000470 PF00586 AIR synthase related protein, N-terminal domain DKE42_000470 PF02769 AIR synthase related protein, C-terminal domain DKE42_000475 PF01029 NusB family DKE42_000515 PF02580 D-Tyr-tRNA(Tyr) deacylase DKE42_000520 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE42_000520 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKE42_000535 PF03069 Acetamidase/Formamidase family DKE42_000560 PF00486 Transcriptional regulatory protein, C terminal DKE42_000560 PF00072 Response regulator receiver domain DKE42_000575 PF01554 MatE DKE42_000605 PF02600 Disulfide bond formation protein DsbB DKE42_000655 PF05728 Uncharacterised protein family (UPF0227) DKE42_000665 PF04115 Ureidoglycolate lyase DKE42_000685 PF00860 Permease family DKE42_000690 PF00576 HIUase/Transthyretin family DKE42_000740 PF03960 ArsC family DKE42_000745 PF03372 Endonuclease/Exonuclease/phosphatase family DKE42_000770 PF03033 Glycosyltransferase family 28 N-terminal domain DKE42_000770 PF04101 Glycosyltransferase family 28 C-terminal domain DKE42_000775 PF08245 Mur ligase middle domain DKE42_000775 PF01225 Mur ligase family, catalytic domain DKE42_000775 PF02875 Mur ligase family, glutamate ligase domain DKE42_000780 PF01820 D-ala D-ala ligase N-terminus DKE42_000780 PF07478 D-ala D-ala ligase C-terminus DKE42_000785 PF03799 Cell division protein FtsQ DKE42_000785 PF08478 POTRA domain, FtsQ-type DKE42_000800 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DKE42_000810 PF01551 Peptidase family M23 DKE42_000815 PF17831 Pyruvate dehydrogenase E1 component middle domain DKE42_000815 PF00456 Transketolase, thiamine diphosphate binding domain DKE42_000830 PF01169 Uncharacterized protein family UPF0016 DKE42_000840 PF01613 Flavin reductase like domain DKE42_000840 PF00258 Flavodoxin DKE42_000845 PF00571 CBS domain DKE42_000845 PF00478 IMP dehydrogenase / GMP reductase domain DKE42_000855 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKE42_000855 PF01243 Pyridoxamine 5'-phosphate oxidase DKE42_000910 PF13193 AMP-binding enzyme C-terminal domain DKE42_000910 PF16177 Acetyl-coenzyme A synthetase N-terminus DKE42_000910 PF00501 AMP-binding enzyme DKE42_000920 PF01037 Lrp/AsnC ligand binding domain DKE42_000925 PF00296 Luciferase-like monooxygenase DKE42_000935 PF00072 Response regulator receiver domain DKE42_000935 PF00196 Bacterial regulatory proteins, luxR family DKE42_000950 PF04341 Protein of unknown function, DUF485 DKE42_000955 PF00474 Sodium:solute symporter family DKE42_000985 PF00440 Bacterial regulatory proteins, tetR family DKE42_000985 PF16925 Tetracyclin repressor-like, C-terminal domain DKE42_000990 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE42_000990 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_000990 PF14765 Polyketide synthase dehydratase DKE42_000990 PF00550 Phosphopantetheine attachment site DKE42_000990 PF16197 Ketoacyl-synthetase C-terminal extension DKE42_000990 PF00107 Zinc-binding dehydrogenase DKE42_000990 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE42_000990 PF00698 Acyl transferase domain DKE42_000990 PF08659 KR domain DKE42_001000 PF06942 GlpM protein DKE42_001005 PF08543 Phosphomethylpyrimidine kinase DKE42_001005 PF03070 TENA/THI-4/PQQC family DKE42_001005 PF02581 Thiamine monophosphate synthase DKE42_001020 PF00436 Single-strand binding protein family DKE42_001040 PF00324 Amino acid permease DKE42_001050 PF00202 Aminotransferase class-III DKE42_001055 PF00171 Aldehyde dehydrogenase family DKE42_001065 PF00857 Isochorismatase family DKE42_001070 PF02678 Pirin DKE42_001070 PF05726 Pirin C-terminal cupin domain DKE42_001110 PF03466 LysR substrate binding domain DKE42_001110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_001165 PF01638 HxlR-like helix-turn-helix DKE42_001200 PF02705 K+ potassium transporter DKE42_001235 PF00230 Major intrinsic protein DKE42_001255 PF01636 Phosphotransferase enzyme family DKE42_001270 PF03992 Antibiotic biosynthesis monooxygenase DKE42_001285 PF00977 Histidine biosynthesis protein DKE42_001290 PF01612 3'-5' exonuclease DKE42_001290 PF00570 HRDC domain DKE42_001300 PF00117 Glutamine amidotransferase class-I DKE42_001305 PF00475 Imidazoleglycerol-phosphate dehydratase DKE42_001325 PF00583 Acetyltransferase (GNAT) family DKE42_001345 PF00072 Response regulator receiver domain DKE42_001345 PF00486 Transcriptional regulatory protein, C terminal DKE42_001350 PF17674 HHH domain DKE42_001350 PF09371 Tex-like protein N-terminal domain DKE42_001350 PF16921 Tex protein YqgF-like domain DKE42_001350 PF00575 S1 RNA binding domain DKE42_001360 PF00106 short chain dehydrogenase DKE42_001475 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE42_001505 PF02875 Mur ligase family, glutamate ligase domain DKE42_001505 PF01225 Mur ligase family, catalytic domain DKE42_001505 PF08245 Mur ligase middle domain DKE42_001510 PF02875 Mur ligase family, glutamate ligase domain DKE42_001510 PF01225 Mur ligase family, catalytic domain DKE42_001510 PF08245 Mur ligase middle domain DKE42_001515 PF00953 Glycosyl transferase family 4 DKE42_001555 PF11741 AMIN domain DKE42_001555 PF00263 Bacterial type II and III secretion system protein DKE42_001555 PF07660 Secretin and TonB N terminus short domain DKE42_001555 PF03958 Bacterial type II/III secretion system short domain DKE42_001575 PF00310 Glutamine amidotransferases class-II DKE42_001575 PF04898 Glutamate synthase central domain DKE42_001575 PF01645 Conserved region in glutamate synthase DKE42_001575 PF01493 GXGXG motif DKE42_001590 PF04011 LemA family DKE42_001605 PF07963 Prokaryotic N-terminal methylation motif DKE42_001605 PF00114 Pilin (bacterial filament) DKE42_001620 PF00210 Ferritin-like domain DKE42_001625 PF04324 BFD-like [2Fe-2S] binding domain DKE42_001635 PF01042 Endoribonuclease L-PSP DKE42_001650 PF01192 RNA polymerase Rpb6 DKE42_001655 PF00625 Guanylate kinase DKE42_001660 PF02401 LytB protein DKE42_001705 PF05239 PRC-barrel domain DKE42_001705 PF01782 RimM N-terminal domain DKE42_001710 PF01746 tRNA (Guanine-1)-methyltransferase DKE42_001715 PF01245 Ribosomal protein L19 DKE42_001730 PF01509 TruB family pseudouridylate synthase (N terminal domain) DKE42_001730 PF16198 tRNA pseudouridylate synthase B C-terminal domain DKE42_001730 PF09157 Pseudouridine synthase II TruB, C-terminal DKE42_001745 PF00892 EamA-like transporter family DKE42_001760 PF02913 FAD linked oxidases, C-terminal domain DKE42_001760 PF01565 FAD binding domain DKE42_001780 PF03992 Antibiotic biosynthesis monooxygenase DKE42_001795 PF07690 Major Facilitator Superfamily DKE42_001815 PF13614 AAA domain DKE42_001835 PF08241 Methyltransferase domain DKE42_001850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKE42_001850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKE42_001855 PF00202 Aminotransferase class-III DKE42_001875 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DKE42_001910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_001910 PF03466 LysR substrate binding domain DKE42_001965 PF04024 PspC domain DKE42_001985 PF08501 Shikimate dehydrogenase substrate binding domain DKE42_001985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKE42_001985 PF01488 Shikimate / quinate 5-dehydrogenase DKE42_001990 PF01218 Coproporphyrinogen III oxidase DKE42_002005 PF00459 Inositol monophosphatase family DKE42_002025 PF02405 Permease MlaE DKE42_002045 PF01544 CorA-like Mg2+ transporter protein DKE42_002050 PF03641 Possible lysine decarboxylase DKE42_002055 PF00293 NUDIX domain DKE42_002105 PF02082 Transcriptional regulator DKE42_002110 PF00042 Globin DKE42_002110 PF00175 Oxidoreductase NAD-binding domain DKE42_002110 PF00970 Oxidoreductase FAD-binding domain DKE42_002135 PF00338 Ribosomal protein S10p/S20e DKE42_002140 PF00297 Ribosomal protein L3 DKE42_002145 PF00573 Ribosomal protein L4/L1 family DKE42_002150 PF00276 Ribosomal protein L23 DKE42_002155 PF00181 Ribosomal Proteins L2, RNA binding domain DKE42_002155 PF03947 Ribosomal Proteins L2, C-terminal domain DKE42_002160 PF00203 Ribosomal protein S19 DKE42_002165 PF00237 Ribosomal protein L22p/L17e DKE42_002175 PF00252 Ribosomal protein L16p/L10e DKE42_002180 PF00831 Ribosomal L29 protein DKE42_002185 PF00366 Ribosomal protein S17 DKE42_002190 PF00238 Ribosomal protein L14p/L23e DKE42_002205 PF00253 Ribosomal protein S14p/S29e DKE42_002210 PF00410 Ribosomal protein S8 DKE42_002215 PF00347 Ribosomal protein L6 DKE42_002220 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE42_002225 PF00333 Ribosomal protein S5, N-terminal domain DKE42_002225 PF03719 Ribosomal protein S5, C-terminal domain DKE42_002230 PF00327 Ribosomal protein L30p/L7e DKE42_002235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE42_002240 PF00344 SecY translocase DKE42_002245 PF00444 Ribosomal protein L36 DKE42_002250 PF00416 Ribosomal protein S13/S18 DKE42_002255 PF00411 Ribosomal protein S11 DKE42_002260 PF00163 Ribosomal protein S4/S9 N-terminal domain DKE42_002260 PF01479 S4 domain DKE42_002315 PF09526 Probable metal-binding protein (DUF2387) DKE42_002435 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE42_002435 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE42_002460 PF01066 CDP-alcohol phosphatidyltransferase DKE42_002510 PF17932 Tetracyclin repressor-like, C-terminal domain DKE42_002510 PF00440 Bacterial regulatory proteins, tetR family DKE42_002530 PF01039 Carboxyl transferase domain DKE42_002535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_002535 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_002535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_002575 PF04386 Stringent starvation protein B DKE42_002580 PF00043 Glutathione S-transferase, C-terminal domain DKE42_002580 PF13417 Glutathione S-transferase, N-terminal domain DKE42_002585 PF00380 Ribosomal protein S9/S16 DKE42_002595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKE42_002600 PF00398 Ribosomal RNA adenine dimethylase DKE42_002605 PF00398 Ribosomal RNA adenine dimethylase DKE42_002610 PF00398 Ribosomal RNA adenine dimethylase DKE42_002615 PF00149 Calcineurin-like phosphoesterase DKE42_002650 PF10518 TAT (twin-arginine translocation) pathway signal sequence DKE42_002650 PF00149 Calcineurin-like phosphoesterase DKE42_002660 PF00990 Diguanylate cyclase, GGDEF domain DKE42_002660 PF17152 Periplasmic sensor domain DKE42_002665 PF13689 YfiR/HmsC-like DKE42_002730 PF03061 Thioesterase superfamily DKE42_002765 PF03795 YCII-related domain DKE42_002770 PF04279 Intracellular septation protein A DKE42_002790 PF02441 Flavoprotein DKE42_002790 PF04127 DNA / pantothenate metabolism flavoprotein DKE42_002795 PF07549 SecD/SecF GG Motif DKE42_002795 PF02355 Protein export membrane protein DKE42_002805 PF02699 Preprotein translocase subunit DKE42_002810 PF01702 Queuine tRNA-ribosyltransferase DKE42_002815 PF02547 Queuosine biosynthesis protein DKE42_002845 PF01522 Polysaccharide deacetylase DKE42_002905 PF06146 Phosphate-starvation-inducible E DKE42_002910 PF02798 Glutathione S-transferase, N-terminal domain DKE42_002910 PF00043 Glutathione S-transferase, C-terminal domain DKE42_002915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_002915 PF03466 LysR substrate binding domain DKE42_002970 PF01923 Cobalamin adenosyltransferase DKE42_002985 PF00291 Pyridoxal-phosphate dependent enzyme DKE42_003020 PF01039 Carboxyl transferase domain DKE42_003075 PF13673 Acetyltransferase (GNAT) domain DKE42_003105 PF02311 AraC-like ligand binding domain DKE42_003105 PF12833 Helix-turn-helix domain DKE42_003115 PF04966 Carbohydrate-selective porin, OprB family DKE42_003125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE42_003125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE42_003135 PF00893 Small Multidrug Resistance protein DKE42_003150 PF07963 Prokaryotic N-terminal methylation motif DKE42_003150 PF00114 Pilin (bacterial filament) DKE42_003155 PF13505 Outer membrane protein beta-barrel domain DKE42_003155 PF00691 OmpA family DKE42_003200 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DKE42_003200 PF06827 Zinc finger found in FPG and IleRS DKE42_003200 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DKE42_003205 PF02245 Methylpurine-DNA glycosylase (MPG) DKE42_003215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE42_003260 PF01613 Flavin reductase like domain DKE42_003275 PF00296 Luciferase-like monooxygenase DKE42_003290 PF04343 Protein of unknown function, DUF488 DKE42_003295 PF08274 PhnA Zinc-Ribbon DKE42_003295 PF03831 PhnA domain DKE42_003300 PF07411 Domain of unknown function (DUF1508) DKE42_003325 PF00072 Response regulator receiver domain DKE42_003330 PF00072 Response regulator receiver domain DKE42_003335 PF01584 CheW-like domain DKE42_003345 PF01627 Hpt domain DKE42_003345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_003345 PF01584 CheW-like domain DKE42_003345 PF00072 Response regulator receiver domain DKE42_003360 PF08085 Entericidin EcnA/B family DKE42_003370 PF04304 Protein of unknown function (DUF454) DKE42_003425 PF12805 FUSC-like inner membrane protein yccS DKE42_003430 PF07690 Major Facilitator Superfamily DKE42_003450 PF01235 Sodium:alanine symporter family DKE42_003460 PF13291 ACT domain DKE42_003460 PF00291 Pyridoxal-phosphate dependent enzyme DKE42_003495 PF02934 GatB/GatE catalytic domain DKE42_003495 PF02637 GatB domain DKE42_003500 PF01425 Amidase DKE42_003505 PF02686 Glu-tRNAGln amidotransferase C subunit DKE42_003515 PF04085 rod shape-determining protein MreC DKE42_003525 PF02545 Maf-like protein DKE42_003530 PF10150 Ribonuclease E/G family DKE42_003530 PF00575 S1 RNA binding domain DKE42_003540 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DKE42_003540 PF06974 Protein of unknown function (DUF1298) DKE42_003580 PF02673 Bacitracin resistance protein BacA DKE42_003585 PF12833 Helix-turn-helix domain DKE42_003585 PF06719 AraC-type transcriptional regulator N-terminus DKE42_003595 PF01965 DJ-1/PfpI family DKE42_003615 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DKE42_003620 PF09297 NADH pyrophosphatase zinc ribbon domain DKE42_003620 PF00293 NUDIX domain DKE42_003645 PF01145 SPFH domain / Band 7 family DKE42_003655 PF01734 Patatin-like phospholipase DKE42_003685 PF00486 Transcriptional regulatory protein, C terminal DKE42_003685 PF00072 Response regulator receiver domain DKE42_003690 PF00512 His Kinase A (phospho-acceptor) domain DKE42_003690 PF08521 Two-component sensor kinase N-terminal DKE42_003690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_003705 PF00909 Ammonium Transporter Family DKE42_003710 PF03466 LysR substrate binding domain DKE42_003710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_003755 PF01906 Putative heavy-metal-binding DKE42_003765 PF02321 Outer membrane efflux protein DKE42_003800 PF00829 Ribosomal prokaryotic L21 protein DKE42_003805 PF01016 Ribosomal L27 protein DKE42_003810 PF03548 Outer membrane lipoprotein carrier protein LolA DKE42_003830 PF00588 SpoU rRNA Methylase family DKE42_003860 PF03358 NADPH-dependent FMN reductase DKE42_003880 PF03099 Biotin/lipoate A/B protein ligase family DKE42_003885 PF04359 Protein of unknown function (DUF493) DKE42_003915 PF00285 Citrate synthase, C-terminal domain DKE42_003925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE42_003935 PF02910 Fumarate reductase flavoprotein C-term DKE42_003935 PF00890 FAD binding domain DKE42_003940 PF13085 2Fe-2S iron-sulfur cluster binding domain DKE42_003955 PF00676 Dehydrogenase E1 component DKE42_003955 PF16078 2-oxoglutarate dehydrogenase N-terminus DKE42_003955 PF16870 2-oxoglutarate dehydrogenase C-terminal DKE42_003955 PF02779 Transketolase, pyrimidine binding domain DKE42_003960 PF02817 e3 binding domain DKE42_003960 PF00364 Biotin-requiring enzyme DKE42_003960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE42_003970 PF08442 ATP-grasp domain DKE42_003970 PF00549 CoA-ligase DKE42_004020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE42_004030 PF00582 Universal stress protein family DKE42_004050 PF03449 Transcription elongation factor, N-terminal DKE42_004050 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE42_004055 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DKE42_004055 PF02142 MGS-like domain DKE42_004055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE42_004060 PF00117 Glutamine amidotransferase class-I DKE42_004060 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKE42_004090 PF00004 ATPase family associated with various cellular activities (AAA) DKE42_004090 PF17862 AAA+ lid domain DKE42_004090 PF06480 FtsH Extracellular DKE42_004090 PF01434 Peptidase family M41 DKE42_004130 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DKE42_004130 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DKE42_004150 PF00083 Sugar (and other) transporter DKE42_004155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DKE42_004155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DKE42_004190 PF00166 Chaperonin 10 Kd subunit DKE42_004200 PF01219 Prokaryotic diacylglycerol kinase DKE42_004225 PF01435 Peptidase family M48 DKE42_004305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE42_004305 PF00529 HlyD membrane-fusion protein of T1SS DKE42_004310 PF00873 AcrB/AcrD/AcrF family DKE42_004340 PF02634 FdhD/NarQ family DKE42_004355 PF00152 tRNA synthetases class II (D, K and N) DKE42_004375 PF00324 Amino acid permease DKE42_004390 PF01678 Diaminopimelate epimerase DKE42_004405 PF01012 Electron transfer flavoprotein domain DKE42_004440 PF00266 Aminotransferase class-V DKE42_004450 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE42_004460 PF12704 MacB-like periplasmic core domain DKE42_004460 PF02687 FtsX-like permease family DKE42_004465 PF00005 ABC transporter DKE42_004480 PF06965 Na+/H+ antiporter 1 DKE42_004480 PF01343 Peptidase family S49 DKE42_004485 PF12697 Alpha/beta hydrolase family DKE42_004490 PF00551 Formyl transferase DKE42_004495 PF00586 AIR synthase related protein, N-terminal domain DKE42_004495 PF02769 AIR synthase related protein, C-terminal domain DKE42_004505 PF11638 DnaA N-terminal domain DKE42_004505 PF00308 Bacterial dnaA protein DKE42_004505 PF08299 Bacterial dnaA protein helix-turn-helix DKE42_004550 PF00691 OmpA family DKE42_004555 PF07676 WD40-like Beta Propeller Repeat DKE42_004555 PF04052 TolB amino-terminal domain DKE42_004565 PF02472 Biopolymer transport protein ExbD/TolR DKE42_004570 PF01618 MotA/TolQ/ExbB proton channel family DKE42_004575 PF03061 Thioesterase superfamily DKE42_004585 PF17864 RuvB AAA lid domain DKE42_004585 PF05491 RuvB C-terminal winged helix domain DKE42_004585 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKE42_004595 PF01966 HD domain DKE42_004610 PF01784 NIF3 (NGG1p interacting factor 3) DKE42_004620 PF00293 NUDIX domain DKE42_004620 PF01467 Cytidylyltransferase-like DKE42_004635 PF00578 AhpC/TSA family DKE42_004650 PF06508 Queuosine biosynthesis protein QueC DKE42_004705 PF02618 YceG-like family DKE42_004710 PF02223 Thymidylate kinase DKE42_004715 PF02223 Thymidylate kinase DKE42_004725 PF02910 Fumarate reductase flavoprotein C-term DKE42_004725 PF00890 FAD binding domain DKE42_004740 PF06421 GTP-binding protein LepA C-terminus DKE42_004740 PF03144 Elongation factor Tu domain 2 DKE42_004740 PF00009 Elongation factor Tu GTP binding domain DKE42_004740 PF00679 Elongation factor G C-terminus DKE42_004775 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKE42_004780 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DKE42_004785 PF00106 short chain dehydrogenase DKE42_004810 PF00892 EamA-like transporter family DKE42_004835 PF17757 UvrB interaction domain DKE42_004835 PF02151 UvrB/uvrC motif DKE42_004835 PF12344 Ultra-violet resistance protein B DKE42_004835 PF04851 Type III restriction enzyme, res subunit DKE42_004835 PF00271 Helicase conserved C-terminal domain DKE42_004870 PF01472 PUA domain DKE42_004870 PF00696 Amino acid kinase family DKE42_004905 PF02350 UDP-N-acetylglucosamine 2-epimerase DKE42_004940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE42_004945 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_004985 PF03466 LysR substrate binding domain DKE42_004985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_004995 PF02567 Phenazine biosynthesis-like protein DKE42_005030 PF02581 Thiamine monophosphate synthase DKE42_005035 PF00202 Aminotransferase class-III DKE42_005045 PF00849 RNA pseudouridylate synthase DKE42_005085 PF00282 Pyridoxal-dependent decarboxylase conserved domain DKE42_005090 PF00171 Aldehyde dehydrogenase family DKE42_005095 PF01037 Lrp/AsnC ligand binding domain DKE42_005110 PF12849 PBP superfamily domain DKE42_005145 PF08328 Adenylosuccinate lyase C-terminal DKE42_005145 PF00206 Lyase DKE42_005160 PF13344 Haloacid dehalogenase-like hydrolase DKE42_005160 PF00293 NUDIX domain DKE42_005165 PF00132 Bacterial transferase hexapeptide (six repeats) DKE42_005170 PF00768 D-alanyl-D-alanine carboxypeptidase DKE42_005170 PF07943 Penicillin-binding protein 5, C-terminal domain DKE42_005185 PF01975 Survival protein SurE DKE42_005210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE42_005215 PF13593 SBF-like CPA transporter family (DUF4137) DKE42_005220 PF01197 Ribosomal protein L31 DKE42_005235 PF04055 Radical SAM superfamily DKE42_005245 PF02554 Carbon starvation protein CstA DKE42_005245 PF13722 5TM C-terminal transporter carbon starvation CstA DKE42_005250 PF04328 Selenoprotein, putative DKE42_005295 PF02678 Pirin DKE42_005295 PF17954 Quercetinase C-terminal cupin domain DKE42_005305 PF00501 AMP-binding enzyme DKE42_005305 PF00550 Phosphopantetheine attachment site DKE42_005305 PF13193 AMP-binding enzyme C-terminal domain DKE42_005305 PF00668 Condensation domain DKE42_005325 PF00005 ABC transporter DKE42_005335 PF07715 TonB-dependent Receptor Plug Domain DKE42_005335 PF00593 TonB dependent receptor DKE42_005340 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DKE42_005355 PF00857 Isochorismatase family DKE42_005355 PF00550 Phosphopantetheine attachment site DKE42_005375 PF00005 ABC transporter DKE42_005375 PF00664 ABC transporter transmembrane region DKE42_005390 PF00425 chorismate binding enzyme DKE42_005430 PF01227 GTP cyclohydrolase I DKE42_005465 PF00218 Indole-3-glycerol phosphate synthase DKE42_005470 PF02885 Glycosyl transferase family, helical bundle domain DKE42_005470 PF00591 Glycosyl transferase family, a/b domain DKE42_005485 PF00117 Glutamine amidotransferase class-I DKE42_005785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE42_005785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE42_005800 PF12627 Probable RNA and SrmB- binding site of polymerase A DKE42_005800 PF01743 Poly A polymerase head domain DKE42_005805 PF00390 Malic enzyme, N-terminal domain DKE42_005805 PF03949 Malic enzyme, NAD binding domain DKE42_005805 PF01515 Phosphate acetyl/butaryl transferase DKE42_005820 PF02219 Methylenetetrahydrofolate reductase DKE42_005845 PF04055 Radical SAM superfamily DKE42_005850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE42_005850 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_005870 PF00557 Metallopeptidase family M24 DKE42_005910 PF03330 Lytic transglycolase DKE42_005910 PF05036 Sporulation related domain DKE42_005935 PF01061 ABC-2 type transporter DKE42_005945 PF00589 Phage integrase family DKE42_006175 PF11799 impB/mucB/samB family C-terminal domain DKE42_006175 PF13438 Domain of unknown function (DUF4113) DKE42_006175 PF00817 impB/mucB/samB family DKE42_006225 PF03466 LysR substrate binding domain DKE42_006225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_006235 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_006250 PF00893 Small Multidrug Resistance protein DKE42_006255 PF00037 4Fe-4S binding domain DKE42_006270 PF02567 Phenazine biosynthesis-like protein DKE42_006275 PF00970 Oxidoreductase FAD-binding domain DKE42_006275 PF00175 Oxidoreductase NAD-binding domain DKE42_006325 PF00912 Transglycosylase DKE42_006325 PF00905 Penicillin binding protein transpeptidase domain DKE42_006325 PF14814 Bifunctional transglycosylase second domain DKE42_006330 PF01513 ATP-NAD kinase DKE42_006335 PF07023 Protein of unknown function (DUF1315) DKE42_006365 PF01842 ACT domain DKE42_006365 PF00800 Prephenate dehydratase DKE42_006365 PF01817 Chorismate mutase type II DKE42_006405 PF01139 tRNA-splicing ligase RtcB DKE42_006410 PF00753 Metallo-beta-lactamase superfamily DKE42_006425 PF03883 Peroxide stress protein YaaA DKE42_006435 PF05690 Thiazole biosynthesis protein ThiG DKE42_006460 PF00313 'Cold-shock' DNA-binding domain DKE42_006465 PF00271 Helicase conserved C-terminal domain DKE42_006465 PF00270 DEAD/DEAH box helicase DKE42_006475 PF00881 Nitroreductase family DKE42_006480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKE42_006480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKE42_006535 PF09424 Yqey-like protein DKE42_006540 PF01165 Ribosomal protein S21 DKE42_006565 PF03793 PASTA domain DKE42_006565 PF00069 Protein kinase domain DKE42_006590 PF00313 'Cold-shock' DNA-binding domain DKE42_006610 PF03616 Sodium/glutamate symporter DKE42_006695 PF04403 Paraquat-inducible protein A DKE42_006720 PF00072 Response regulator receiver domain DKE42_006720 PF00486 Transcriptional regulatory protein, C terminal DKE42_006770 PF00072 Response regulator receiver domain DKE42_006770 PF00486 Transcriptional regulatory protein, C terminal DKE42_006795 PF07995 Glucose / Sorbosone dehydrogenase DKE42_006815 PF00375 Sodium:dicarboxylate symporter family DKE42_006830 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_006850 PF01808 AICARFT/IMPCHase bienzyme DKE42_006850 PF02142 MGS-like domain DKE42_006895 PF08379 Bacterial transglutaminase-like N-terminal region DKE42_006895 PF01841 Transglutaminase-like superfamily DKE42_006905 PF01168 Alanine racemase, N-terminal domain DKE42_006905 PF00842 Alanine racemase, C-terminal domain DKE42_006910 PF00772 DnaB-like helicase N terminal domain DKE42_006910 PF03796 DnaB-like helicase C terminal domain DKE42_006915 PF03948 Ribosomal protein L9, C-terminal domain DKE42_006915 PF01281 Ribosomal protein L9, N-terminal domain DKE42_006920 PF01084 Ribosomal protein S18 DKE42_006925 PF01250 Ribosomal protein S6 DKE42_006935 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKE42_006940 PF00510 Cytochrome c oxidase subunit III DKE42_006945 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKE42_006950 PF06481 COX Aromatic Rich Motif DKE42_006950 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DKE42_006960 PF00391 PEP-utilising enzyme, mobile domain DKE42_006960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DKE42_006960 PF02896 PEP-utilising enzyme, TIM barrel domain DKE42_006985 PF13994 PgaD-like protein DKE42_007020 PF03462 PCRF domain DKE42_007020 PF00472 RF-1 domain DKE42_007025 PF17827 PrmC N-terminal domain DKE42_007025 PF13847 Methyltransferase domain DKE42_007030 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_007050 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_007050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_007050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_007055 PF01613 Flavin reductase like domain DKE42_007060 PF00899 ThiF family DKE42_007065 PF03109 ABC1 family DKE42_007070 PF02152 Dihydroneopterin aldolase DKE42_007090 PF02669 K+-transporting ATPase, c chain DKE42_007100 PF00486 Transcriptional regulatory protein, C terminal DKE42_007100 PF00072 Response regulator receiver domain DKE42_007115 PF03232 Ubiquinone biosynthesis protein COQ7 DKE42_007165 PF07690 Major Facilitator Superfamily DKE42_007175 PF03466 LysR substrate binding domain DKE42_007175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_007180 PF04284 Protein of unknown function (DUF441) DKE42_007205 PF00849 RNA pseudouridylate synthase DKE42_007205 PF01479 S4 domain DKE42_007210 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DKE42_007225 PF17209 Hfq protein DKE42_007255 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE42_007255 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DKE42_007260 PF02540 NAD synthase DKE42_007260 PF00958 GMP synthase C terminal domain DKE42_007260 PF00117 Glutamine amidotransferase class-I DKE42_007265 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DKE42_007300 PF14493 Helix-turn-helix domain DKE42_007300 PF05970 PIF1-like helicase DKE42_007310 PF02110 Hydroxyethylthiazole kinase family DKE42_007340 PF13953 PapC C-terminal domain DKE42_007340 PF00577 Outer membrane usher protein DKE42_007340 PF13954 PapC N-terminal domain DKE42_007365 PF01817 Chorismate mutase type II DKE42_007395 PF18331 PKHD-type hydroxylase C-terminal domain DKE42_007395 PF13640 2OG-Fe(II) oxygenase superfamily DKE42_007450 PF01638 HxlR-like helix-turn-helix DKE42_007505 PF04151 Bacterial pre-peptidase C-terminal domain DKE42_007515 PF00582 Universal stress protein family DKE42_007545 PF01810 LysE type translocator DKE42_007640 PF00857 Isochorismatase family DKE42_007650 PF01638 HxlR-like helix-turn-helix DKE42_007665 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DKE42_007665 PF01565 FAD binding domain DKE42_007690 PF01645 Conserved region in glutamate synthase DKE42_007725 PF12832 MFS_1 like family DKE42_007735 PF02785 Biotin carboxylase C-terminal domain DKE42_007735 PF00289 Biotin carboxylase, N-terminal domain DKE42_007735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE42_007740 PF00364 Biotin-requiring enzyme DKE42_007745 PF01220 Dehydroquinase class II DKE42_007825 PF12804 MobA-like NTP transferase domain DKE42_007865 PF01638 HxlR-like helix-turn-helix DKE42_007870 PF00392 Bacterial regulatory proteins, gntR family DKE42_007870 PF00155 Aminotransferase class I and II DKE42_007895 PF02635 DsrE/DsrF-like family DKE42_007900 PF16363 GDP-mannose 4,6 dehydratase DKE42_007940 PF01266 FAD dependent oxidoreductase DKE42_007950 PF02542 YgbB family DKE42_007965 PF00440 Bacterial regulatory proteins, tetR family DKE42_007975 PF00158 Sigma-54 interaction domain DKE42_007975 PF02954 Bacterial regulatory protein, Fis family DKE42_007975 PF00072 Response regulator receiver domain DKE42_008015 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DKE42_008015 PF13288 DXP reductoisomerase C-terminal domain DKE42_008015 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DKE42_008040 PF07977 FabA-like domain DKE42_008045 PF00132 Bacterial transferase hexapeptide (six repeats) DKE42_008045 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DKE42_008065 PF00154 recA bacterial DNA recombination protein DKE42_008075 PF13419 Haloacid dehalogenase-like hydrolase DKE42_008090 PF01037 Lrp/AsnC ligand binding domain DKE42_008160 PF00294 pfkB family carbohydrate kinase DKE42_008185 PF03928 Haem-degrading DKE42_008190 PF05525 Branched-chain amino acid transport protein DKE42_008210 PF00462 Glutaredoxin DKE42_008215 PF00202 Aminotransferase class-III DKE42_008270 PF08173 Membrane bound YbgT-like protein DKE42_008275 PF02322 Cytochrome bd terminal oxidase subunit II DKE42_008290 PF07290 Protein of unknown function (DUF1449) DKE42_008300 PF00294 pfkB family carbohydrate kinase DKE42_008320 PF02254 TrkA-N domain DKE42_008320 PF02080 TrkA-C domain DKE42_008330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DKE42_008355 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKE42_008370 PF00793 DAHP synthetase I family DKE42_008420 PF06418 CTP synthase N-terminus DKE42_008420 PF00117 Glutamine amidotransferase class-I DKE42_008460 PF01144 Coenzyme A transferase DKE42_008470 PF02803 Thiolase, C-terminal domain DKE42_008470 PF00108 Thiolase, N-terminal domain DKE42_008475 PF00206 Lyase DKE42_008475 PF10397 Adenylosuccinate lyase C-terminus DKE42_008480 PF00561 alpha/beta hydrolase fold DKE42_008485 PF07690 Major Facilitator Superfamily DKE42_008490 PF02627 Carboxymuconolactone decarboxylase family DKE42_008500 PF00775 Dioxygenase DKE42_008510 PF05048 Periplasmic copper-binding protein (NosD) DKE42_008530 PF04143 Sulphur transport DKE42_008545 PF09339 IclR helix-turn-helix domain DKE42_008545 PF01614 Bacterial transcriptional regulator DKE42_008570 PF00106 short chain dehydrogenase DKE42_008595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE42_008655 PF12146 Serine aminopeptidase, S33 DKE42_008665 PF01144 Coenzyme A transferase DKE42_008670 PF01144 Coenzyme A transferase DKE42_008675 PF04444 Catechol dioxygenase N terminus DKE42_008675 PF00775 Dioxygenase DKE42_008680 PF02426 Muconolactone delta-isomerase DKE42_008700 PF00392 Bacterial regulatory proteins, gntR family DKE42_008700 PF07729 FCD domain DKE42_008705 PF00920 Dehydratase family DKE42_008720 PF00171 Aldehyde dehydrogenase family DKE42_008725 PF00576 HIUase/Transthyretin family DKE42_008730 PF00860 Permease family DKE42_008745 PF00392 Bacterial regulatory proteins, gntR family DKE42_008745 PF07729 FCD domain DKE42_008770 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_008810 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_008830 PF00440 Bacterial regulatory proteins, tetR family DKE42_008830 PF08359 YsiA-like protein, C-terminal region DKE42_008835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_008835 PF03466 LysR substrate binding domain DKE42_008850 PF00106 short chain dehydrogenase DKE42_008855 PF01575 MaoC like domain DKE42_008870 PF13193 AMP-binding enzyme C-terminal domain DKE42_008870 PF00501 AMP-binding enzyme DKE42_008975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE42_008975 PF01842 ACT domain DKE42_008975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE42_008980 PF03737 Aldolase/RraA DKE42_009030 PF00324 Amino acid permease DKE42_009075 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE42_009075 PF14572 Phosphoribosyl synthetase-associated domain DKE42_009080 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE42_009140 PF02824 TGS domain DKE42_009140 PF04607 Region found in RelA / SpoT proteins DKE42_009140 PF13291 ACT domain DKE42_009180 PF00561 alpha/beta hydrolase fold DKE42_009190 PF09905 DNA-binding protein VF530 DKE42_009245 PF00107 Zinc-binding dehydrogenase DKE42_009245 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_009285 PF00672 HAMP domain DKE42_009285 PF00512 His Kinase A (phospho-acceptor) domain DKE42_009285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_009290 PF00072 Response regulator receiver domain DKE42_009290 PF00486 Transcriptional regulatory protein, C terminal DKE42_009315 PF01244 Membrane dipeptidase (Peptidase family M19) DKE42_009325 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE42_009330 PF03070 TENA/THI-4/PQQC family DKE42_009340 PF08042 PqqA family DKE42_009355 PF00857 Isochorismatase family DKE42_009355 PF00550 Phosphopantetheine attachment site DKE42_009360 PF00106 short chain dehydrogenase DKE42_009370 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_009390 PF00866 Ring hydroxylating beta subunit DKE42_009395 PF00175 Oxidoreductase NAD-binding domain DKE42_009395 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE42_009395 PF00970 Oxidoreductase FAD-binding domain DKE42_009400 PF12833 Helix-turn-helix domain DKE42_009400 PF14525 AraC-binding-like domain DKE42_009410 PF01613 Flavin reductase like domain DKE42_009440 PF06719 AraC-type transcriptional regulator N-terminus DKE42_009440 PF12833 Helix-turn-helix domain DKE42_009490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_009490 PF03466 LysR substrate binding domain DKE42_009495 PF01144 Coenzyme A transferase DKE42_009515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_009515 PF03466 LysR substrate binding domain DKE42_009580 PF01925 Sulfite exporter TauE/SafE DKE42_009590 PF04273 Putative phosphatase (DUF442) DKE42_009590 PF00753 Metallo-beta-lactamase superfamily DKE42_009595 PF00753 Metallo-beta-lactamase superfamily DKE42_009610 PF00107 Zinc-binding dehydrogenase DKE42_009610 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_009615 PF00106 short chain dehydrogenase DKE42_009625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE42_009625 PF00364 Biotin-requiring enzyme DKE42_009625 PF02817 e3 binding domain DKE42_009635 PF00676 Dehydrogenase E1 component DKE42_009640 PF04055 Radical SAM superfamily DKE42_009670 PF05175 Methyltransferase small domain DKE42_009695 PF05166 YcgL domain DKE42_009715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_009715 PF03466 LysR substrate binding domain DKE42_009720 PF02525 Flavodoxin-like fold DKE42_009750 PF00561 alpha/beta hydrolase fold DKE42_009765 PF01230 HIT domain DKE42_009820 PF01925 Sulfite exporter TauE/SafE DKE42_009830 PF02654 Cobalamin-5-phosphate synthase DKE42_009850 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DKE42_009895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_009895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_009895 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_009905 PF12852 Cupin DKE42_009905 PF12833 Helix-turn-helix domain DKE42_009915 PF00216 Bacterial DNA-binding protein DKE42_009930 PF02082 Transcriptional regulator DKE42_009940 PF01592 NifU-like N terminal domain DKE42_009950 PF00226 DnaJ domain DKE42_009950 PF07743 HSCB C-terminal oligomerisation domain DKE42_009955 PF00012 Hsp70 protein DKE42_009960 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE42_010015 PF00459 Inositol monophosphatase family DKE42_010035 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_010035 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE42_010040 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_010080 PF01618 MotA/TolQ/ExbB proton channel family DKE42_010085 PF02472 Biopolymer transport protein ExbD/TolR DKE42_010100 PF01274 Malate synthase DKE42_010120 PF03956 Lysine exporter LysO DKE42_010135 PF00216 Bacterial DNA-binding protein DKE42_010140 PF00575 S1 RNA binding domain DKE42_010145 PF02224 Cytidylate kinase DKE42_010185 PF02501 Type II secretion system (T2SS), protein I DKE42_010185 PF07963 Prokaryotic N-terminal methylation motif DKE42_010200 PF01026 TatD related DNase DKE42_010220 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DKE42_010240 PF17762 HTH domain found in ParB protein DKE42_010240 PF02195 ParB-like nuclease domain DKE42_010250 PF02527 rRNA small subunit methyltransferase G DKE42_010275 PF01116 Fructose-bisphosphate aldolase class-II DKE42_010285 PF00162 Phosphoglycerate kinase DKE42_010315 PF00375 Sodium:dicarboxylate symporter family DKE42_010325 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DKE42_010345 PF12833 Helix-turn-helix domain DKE42_010345 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE42_010350 PF01597 Glycine cleavage H-protein DKE42_010355 PF02146 Sir2 family DKE42_010360 PF00474 Sodium:solute symporter family DKE42_010375 PF04229 GrpB protein DKE42_010380 PF05958 tRNA (Uracil-5-)-methyltransferase DKE42_010390 PF09992 Phosphodiester glycosidase DKE42_010410 PF00456 Transketolase, thiamine diphosphate binding domain DKE42_010410 PF02780 Transketolase, C-terminal domain DKE42_010410 PF02779 Transketolase, pyrimidine binding domain DKE42_010415 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKE42_010415 PF02772 S-adenosylmethionine synthetase, central domain DKE42_010415 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKE42_010450 PF02075 Crossover junction endodeoxyribonuclease RuvC DKE42_010480 PF16970 Type-1 fimbrial protein, A DKE42_010485 PF02753 Pili assembly chaperone PapD, C-terminal domain DKE42_010485 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DKE42_010540 PF03466 LysR substrate binding domain DKE42_010540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_010570 PF01037 Lrp/AsnC ligand binding domain DKE42_010580 PF00005 ABC transporter DKE42_010590 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_010620 PF03180 NLPA lipoprotein DKE42_010625 PF03180 NLPA lipoprotein DKE42_010630 PF00005 ABC transporter DKE42_010630 PF09383 NIL domain DKE42_010640 PF01926 50S ribosome-binding GTPase DKE42_010640 PF06071 Protein of unknown function (DUF933) DKE42_010670 PF05437 Branched-chain amino acid transport protein (AzlD) DKE42_010700 PF02311 AraC-like ligand binding domain DKE42_010700 PF12833 Helix-turn-helix domain DKE42_010710 PF01641 SelR domain DKE42_010720 PF00375 Sodium:dicarboxylate symporter family DKE42_010725 PF17763 Glutaminase/Asparaginase C-terminal domain DKE42_010725 PF00710 Asparaginase, N-terminal DKE42_010735 PF00588 SpoU rRNA Methylase family DKE42_010770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_010770 PF03466 LysR substrate binding domain DKE42_010775 PF03358 NADPH-dependent FMN reductase DKE42_010790 PF01022 Bacterial regulatory protein, arsR family DKE42_010795 PF03960 ArsC family DKE42_010835 PF01177 Asp/Glu/Hydantoin racemase DKE42_010840 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DKE42_010845 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_010890 PF02322 Cytochrome bd terminal oxidase subunit II DKE42_010935 PF01039 Carboxyl transferase domain DKE42_010945 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DKE42_010965 PF00392 Bacterial regulatory proteins, gntR family DKE42_010965 PF00155 Aminotransferase class I and II DKE42_010970 PF04172 LrgB-like family DKE42_011020 PF00581 Rhodanese-like domain DKE42_011035 PF00266 Aminotransferase class-V DKE42_011045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_011045 PF03466 LysR substrate binding domain DKE42_011070 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_011075 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_011110 PF01037 Lrp/AsnC ligand binding domain DKE42_011110 PF13404 AsnC-type helix-turn-helix domain DKE42_011120 PF00717 Peptidase S24-like DKE42_011225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_011225 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_011225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_011250 PF03466 LysR substrate binding domain DKE42_011250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_011290 PF01144 Coenzyme A transferase DKE42_011325 PF09339 IclR helix-turn-helix domain DKE42_011340 PF00378 Enoyl-CoA hydratase/isomerase DKE42_011355 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_011355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_011355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_011370 PF00266 Aminotransferase class-V DKE42_011400 PF00842 Alanine racemase, C-terminal domain DKE42_011400 PF01168 Alanine racemase, N-terminal domain DKE42_011415 PF02525 Flavodoxin-like fold DKE42_011420 PF03466 LysR substrate binding domain DKE42_011420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_011465 PF03061 Thioesterase superfamily DKE42_011475 PF07848 PaaX-like protein DKE42_011475 PF08223 PaaX-like protein C-terminal domain DKE42_011485 PF00108 Thiolase, N-terminal domain DKE42_011485 PF02803 Thiolase, C-terminal domain DKE42_011510 PF01883 Iron-sulfur cluster assembly protein DKE42_011520 PF06243 Phenylacetic acid degradation B DKE42_011525 PF05138 Phenylacetic acid catabolic protein DKE42_011555 PF00376 MerR family regulatory protein DKE42_011555 PF09278 MerR, DNA binding DKE42_011590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE42_011595 PF12796 Ankyrin repeats (3 copies) DKE42_011600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_011600 PF03466 LysR substrate binding domain DKE42_011680 PF00654 Voltage gated chloride channel DKE42_011685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE42_011685 PF00289 Biotin carboxylase, N-terminal domain DKE42_011685 PF02785 Biotin carboxylase C-terminal domain DKE42_011685 PF00364 Biotin-requiring enzyme DKE42_011695 PF07286 Protein of unknown function (DUF1445) DKE42_011700 PF03746 LamB/YcsF family DKE42_011730 PF05114 Protein of unknown function (DUF692) DKE42_011820 PF00293 NUDIX domain DKE42_011875 PF07690 Major Facilitator Superfamily DKE42_011880 PF01292 Prokaryotic cytochrome b561 DKE42_011890 PF01638 HxlR-like helix-turn-helix DKE42_011915 PF00892 EamA-like transporter family DKE42_011925 PF13520 Amino acid permease DKE42_011960 PF11953 Domain of unknown function (DUF3470) DKE42_011960 PF00037 4Fe-4S binding domain DKE42_011970 PF01596 O-methyltransferase DKE42_011990 PF00529 HlyD membrane-fusion protein of T1SS DKE42_012000 PF02321 Outer membrane efflux protein DKE42_012005 PF00005 ABC transporter DKE42_012005 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKE42_012010 PF03968 OstA-like protein DKE42_012025 PF01380 SIS domain DKE42_012025 PF00571 CBS domain DKE42_012060 PF01638 HxlR-like helix-turn-helix DKE42_012075 PF00924 Mechanosensitive ion channel DKE42_012135 PF08241 Methyltransferase domain DKE42_012140 PF01037 Lrp/AsnC ligand binding domain DKE42_012160 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE42_012165 PF01810 LysE type translocator DKE42_012235 PF09278 MerR, DNA binding DKE42_012235 PF00376 MerR family regulatory protein DKE42_012260 PF06099 Phenol hydroxylase subunit DKE42_012265 PF02332 Methane/Phenol/Toluene Hydroxylase DKE42_012270 PF02406 MmoB/DmpM family DKE42_012305 PF00355 Rieske [2Fe-2S] domain DKE42_012305 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKE42_012310 PF00866 Ring hydroxylating beta subunit DKE42_012320 PF00106 short chain dehydrogenase DKE42_012350 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DKE42_012350 PF11898 Domain of unknown function (DUF3418) DKE42_012350 PF00271 Helicase conserved C-terminal domain DKE42_012350 PF04408 Helicase associated domain (HA2) DKE42_012350 PF00270 DEAD/DEAH box helicase DKE42_012355 PF00578 AhpC/TSA family DKE42_012355 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE42_012375 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_012375 PF13192 Thioredoxin domain DKE42_012385 PF00043 Glutathione S-transferase, C-terminal domain DKE42_012385 PF02798 Glutathione S-transferase, N-terminal domain DKE42_012395 PF02390 Putative methyltransferase DKE42_012415 PF00043 Glutathione S-transferase, C-terminal domain DKE42_012415 PF13417 Glutathione S-transferase, N-terminal domain DKE42_012430 PF01979 Amidohydrolase family DKE42_012435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKE42_012435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKE42_012445 PF01170 Putative RNA methylase family UPF0020 DKE42_012445 PF02926 THUMP domain DKE42_012445 PF10672 S-adenosylmethionine-dependent methyltransferase DKE42_012475 PF02566 OsmC-like protein DKE42_012490 PF00248 Aldo/keto reductase family DKE42_012505 PF00709 Adenylosuccinate synthetase DKE42_012585 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DKE42_012755 PF01555 DNA methylase DKE42_012840 PF02599 Global regulator protein family DKE42_012890 PF00106 short chain dehydrogenase DKE42_012910 PF07690 Major Facilitator Superfamily DKE42_012915 PF05681 Fumarate hydratase (Fumerase) DKE42_012920 PF05683 Fumarase C-terminus DKE42_013030 PF03573 outer membrane porin, OprD family DKE42_013045 PF07519 Tannase and feruloyl esterase DKE42_013060 PF00392 Bacterial regulatory proteins, gntR family DKE42_013060 PF07729 FCD domain DKE42_013070 PF00701 Dihydrodipicolinate synthetase family DKE42_013100 PF00171 Aldehyde dehydrogenase family DKE42_013135 PF00202 Aminotransferase class-III DKE42_013185 PF05643 Putative bacterial lipoprotein (DUF799) DKE42_013195 PF03783 Curli production assembly/transport component CsgG DKE42_013220 PF05987 Bacterial protein of unknown function (DUF898) DKE42_013260 PF01979 Amidohydrolase family DKE42_013265 PF00929 Exonuclease DKE42_013280 PF07715 TonB-dependent Receptor Plug Domain DKE42_013280 PF00593 TonB dependent receptor DKE42_013290 PF00005 ABC transporter DKE42_013290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKE42_013295 PF00528 Binding-protein-dependent transport system inner membrane component DKE42_013295 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE42_013325 PF09297 NADH pyrophosphatase zinc ribbon domain DKE42_013325 PF00293 NUDIX domain DKE42_013340 PF02021 Uncharacterised protein family UPF0102 DKE42_013355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_013355 PF03466 LysR substrate binding domain DKE42_013360 PF01810 LysE type translocator DKE42_013380 PF01494 FAD binding domain DKE42_013440 PF02590 Predicted SPOUT methyltransferase DKE42_013455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKE42_013455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKE42_013465 PF00633 Helix-hairpin-helix motif DKE42_013465 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE42_013465 PF10576 Iron-sulfur binding domain of endonuclease III DKE42_013475 PF05191 Adenylate kinase, active site lid DKE42_013505 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE42_013515 PF05194 UreE urease accessory protein, C-terminal domain DKE42_013515 PF02814 UreE urease accessory protein, N-terminal domain DKE42_013520 PF00449 Urease alpha-subunit, N-terminal domain DKE42_013520 PF01979 Amidohydrolase family DKE42_013525 PF00699 Urease beta subunit DKE42_013530 PF00547 Urease, gamma subunit DKE42_013535 PF01774 UreD urease accessory protein DKE42_013545 PF17185 NlpE C-terminal OB domain DKE42_013545 PF04170 NlpE N-terminal domain DKE42_013580 PF00009 Elongation factor Tu GTP binding domain DKE42_013600 PF00152 tRNA synthetases class II (D, K and N) DKE42_013600 PF01336 OB-fold nucleic acid binding domain DKE42_013615 PF00301 Rubredoxin DKE42_013625 PF00561 alpha/beta hydrolase fold DKE42_013630 PF03466 LysR substrate binding domain DKE42_013630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_013650 PF00912 Transglycosylase DKE42_013665 PF00005 ABC transporter DKE42_013670 PF13472 GDSL-like Lipase/Acylhydrolase family DKE42_013675 PF00484 Carbonic anhydrase DKE42_013730 PF01384 Phosphate transporter family DKE42_013765 PF01263 Aldose 1-epimerase DKE42_013770 PF07690 Major Facilitator Superfamily DKE42_013775 PF02311 AraC-like ligand binding domain DKE42_013775 PF12833 Helix-turn-helix domain DKE42_013780 PF04960 Glutaminase DKE42_013805 PF00171 Aldehyde dehydrogenase family DKE42_013820 PF12697 Alpha/beta hydrolase family DKE42_013835 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_013835 PF14759 Reductase C-terminal DKE42_013840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE42_013850 PF00355 Rieske [2Fe-2S] domain DKE42_013860 PF00355 Rieske [2Fe-2S] domain DKE42_013870 PF01614 Bacterial transcriptional regulator DKE42_013870 PF09339 IclR helix-turn-helix domain DKE42_013895 PF00535 Glycosyl transferase family 2 DKE42_013920 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE42_013920 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE42_013930 PF03061 Thioesterase superfamily DKE42_014140 PF01266 FAD dependent oxidoreductase DKE42_014180 PF01168 Alanine racemase, N-terminal domain DKE42_014190 PF00437 Type II/IV secretion system protein DKE42_014195 PF01475 Ferric uptake regulator family DKE42_014220 PF01814 Hemerythrin HHE cation binding domain DKE42_014225 PF13230 Glutamine amidotransferases class-II DKE42_014235 PF00696 Amino acid kinase family DKE42_014245 PF00692 dUTPase DKE42_014255 PF13488 Glycine zipper DKE42_014255 PF00691 OmpA family DKE42_014275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE42_014280 PF03776 Septum formation topological specificity factor MinE DKE42_014300 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_014315 PF00583 Acetyltransferase (GNAT) family DKE42_014330 PF00009 Elongation factor Tu GTP binding domain DKE42_014330 PF03144 Elongation factor Tu domain 2 DKE42_014330 PF03143 Elongation factor Tu C-terminal domain DKE42_014345 PF00164 Ribosomal protein S12/S23 DKE42_014355 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE42_014355 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE42_014390 PF00171 Aldehyde dehydrogenase family DKE42_014400 PF07859 alpha/beta hydrolase fold DKE42_014435 PF00037 4Fe-4S binding domain DKE42_014440 PF01467 Cytidylyltransferase-like DKE42_014445 PF01668 SmpB protein DKE42_014450 PF03358 NADPH-dependent FMN reductase DKE42_014465 PF13525 Outer membrane lipoprotein DKE42_014520 PF01386 Ribosomal L25p family DKE42_014525 PF01195 Peptidyl-tRNA hydrolase DKE42_014530 PF02261 Aspartate decarboxylase DKE42_014565 PF00550 Phosphopantetheine attachment site DKE42_014580 PF01783 Ribosomal L32p protein family DKE42_014585 PF02620 Large ribosomal RNA subunit accumulation protein YceD DKE42_014590 PF04315 Elongation factor P hydroxylase DKE42_014595 PF01300 Telomere recombination DKE42_014610 PF01479 S4 domain DKE42_014610 PF00849 RNA pseudouridylate synthase DKE42_014625 PF00155 Aminotransferase class I and II DKE42_014630 PF04055 Radical SAM superfamily DKE42_014630 PF06968 Biotin and Thiamin Synthesis associated domain DKE42_014630 PF00202 Aminotransferase class-III DKE42_014635 PF08241 Methyltransferase domain DKE42_014635 PF12697 Alpha/beta hydrolase family DKE42_014645 PF00982 Glycosyltransferase family 20 DKE42_014650 PF07690 Major Facilitator Superfamily DKE42_014655 PF00210 Ferritin-like domain DKE42_014690 PF03309 Type III pantothenate kinase DKE42_014705 PF01207 Dihydrouridine synthase (Dus) DKE42_014740 PF00692 dUTPase DKE42_014755 PF01048 Phosphorylase superfamily DKE42_014805 PF13533 Biotin-lipoyl like DKE42_014840 PF00970 Oxidoreductase FAD-binding domain DKE42_014840 PF00175 Oxidoreductase NAD-binding domain DKE42_014845 PF03466 LysR substrate binding domain DKE42_014845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_014860 PF00361 Proton-conducting membrane transporter DKE42_014865 PF00361 Proton-conducting membrane transporter DKE42_014870 PF00361 Proton-conducting membrane transporter DKE42_014870 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKE42_014875 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE42_014880 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE42_014885 PF12838 4Fe-4S dicluster domain DKE42_014900 PF10531 SLBB domain DKE42_014900 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKE42_014900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKE42_014910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKE42_014910 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKE42_014915 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE42_014940 PF00072 Response regulator receiver domain DKE42_014940 PF00486 Transcriptional regulatory protein, C terminal DKE42_014990 PF13333 Integrase core domain DKE42_014990 PF13276 HTH-like domain DKE42_014990 PF00665 Integrase core domain DKE42_015005 PF00593 TonB dependent receptor DKE42_015005 PF07715 TonB-dependent Receptor Plug Domain DKE42_015050 PF01252 Signal peptidase (SPase) II DKE42_015060 PF13411 MerR HTH family regulatory protein DKE42_015070 PF01381 Helix-turn-helix DKE42_015140 PF00132 Bacterial transferase hexapeptide (six repeats) DKE42_015180 PF02321 Outer membrane efflux protein DKE42_015190 PF17074 Darcynin, domain of unknown function DKE42_015215 PF01613 Flavin reductase like domain DKE42_015220 PF01717 Cobalamin-independent synthase, Catalytic domain DKE42_015220 PF08267 Cobalamin-independent synthase, N-terminal domain DKE42_015230 PF03466 LysR substrate binding domain DKE42_015230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_015235 PF01810 LysE type translocator DKE42_015245 PF12833 Helix-turn-helix domain DKE42_015285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_015285 PF03466 LysR substrate binding domain DKE42_015305 PF03466 LysR substrate binding domain DKE42_015305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_015395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE42_015395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE42_015400 PF00893 Small Multidrug Resistance protein DKE42_015430 PF00834 Ribulose-phosphate 3 epimerase family DKE42_015445 PF04445 Putative SAM-dependent methyltransferase DKE42_015450 PF00814 Glycoprotease family DKE42_015455 PF00132 Bacterial transferase hexapeptide (six repeats) DKE42_015460 PF00293 NUDIX domain DKE42_015500 PF00425 chorismate binding enzyme DKE42_015500 PF04715 Anthranilate synthase component I, N terminal region DKE42_015510 PF00815 Histidinol dehydrogenase DKE42_015515 PF01634 ATP phosphoribosyltransferase DKE42_015580 PF00795 Carbon-nitrogen hydrolase DKE42_015595 PF02566 OsmC-like protein DKE42_015625 PF02325 YGGT family DKE42_015630 PF03807 NADP oxidoreductase coenzyme F420-dependent DKE42_015630 PF14748 Pyrroline-5-carboxylate reductase dimerisation DKE42_015640 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DKE42_015650 PF00085 Thioredoxin DKE42_015690 PF00453 Ribosomal protein L20 DKE42_015695 PF01632 Ribosomal protein L35 DKE42_015705 PF07690 Major Facilitator Superfamily DKE42_015715 PF00043 Glutathione S-transferase, C-terminal domain DKE42_015715 PF02798 Glutathione S-transferase, N-terminal domain DKE42_015720 PF00707 Translation initiation factor IF-3, C-terminal domain DKE42_015720 PF05198 Translation initiation factor IF-3, N-terminal domain DKE42_015740 PF00381 PTS HPr component phosphorylation site DKE42_015755 PF02548 Ketopantoate hydroxymethyltransferase DKE42_015780 PF00106 short chain dehydrogenase DKE42_015790 PF05958 tRNA (Uracil-5-)-methyltransferase DKE42_015805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_015805 PF00672 HAMP domain DKE42_015805 PF00512 His Kinase A (phospho-acceptor) domain DKE42_015805 PF01627 Hpt domain DKE42_015805 PF00072 Response regulator receiver domain DKE42_015805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKE42_015810 PF00378 Enoyl-CoA hydratase/isomerase DKE42_015830 PF00106 short chain dehydrogenase DKE42_015835 PF02233 NAD(P) transhydrogenase beta subunit DKE42_015840 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE42_015845 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DKE42_015845 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DKE42_015900 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_015920 PF01022 Bacterial regulatory protein, arsR family DKE42_015925 PF03960 ArsC family DKE42_015930 PF13411 MerR HTH family regulatory protein DKE42_015990 PF00486 Transcriptional regulatory protein, C terminal DKE42_015990 PF00072 Response regulator receiver domain DKE42_016075 PF00589 Phage integrase family DKE42_016080 PF01207 Dihydrouridine synthase (Dus) DKE42_016115 PF01026 TatD related DNase DKE42_016150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKE42_016150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKE42_016155 PF10369 Small subunit of acetolactate synthase DKE42_016160 PF00205 Thiamine pyrophosphate enzyme, central domain DKE42_016160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE42_016160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE42_016180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE42_016190 PF02321 Outer membrane efflux protein DKE42_016220 PF03193 RsgA GTPase DKE42_016230 PF00462 Glutaredoxin DKE42_016235 PF02556 Preprotein translocase subunit SecB DKE42_016245 PF01926 50S ribosome-binding GTPase DKE42_016245 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DKE42_016250 PF01011 PQQ enzyme repeat DKE42_016250 PF13360 PQQ-like domain DKE42_016265 PF04551 GcpE protein DKE42_016270 PF13464 Domain of unknown function (DUF4115) DKE42_016285 PF00334 Nucleoside diphosphate kinase DKE42_016290 PF04384 Iron-sulphur cluster assembly DKE42_016305 PF17804 Tail specific protease N-terminal domain DKE42_016305 PF11818 C-terminal domain of tail specific protease (DUF3340) DKE42_016305 PF00595 PDZ domain DKE42_016305 PF03572 Peptidase family S41 DKE42_016325 PF00171 Aldehyde dehydrogenase family DKE42_016335 PF01202 Shikimate kinase DKE42_016340 PF02447 GntP family permease DKE42_016345 PF01081 KDPG and KHG aldolase DKE42_016350 PF00920 Dehydratase family DKE42_016370 PF05683 Fumarase C-terminus DKE42_016370 PF05681 Fumarate hydratase (Fumerase) DKE42_016390 PF00574 Clp protease DKE42_016420 PF00561 alpha/beta hydrolase fold DKE42_016420 PF07021 Methionine biosynthesis protein MetW DKE42_016430 PF01725 Ham1 family DKE42_016440 PF02416 mttA/Hcf106 family DKE42_016445 PF02416 mttA/Hcf106 family DKE42_016470 PF01790 Prolipoprotein diacylglyceryl transferase DKE42_016490 PF00186 Dihydrofolate reductase DKE42_016510 PF01618 MotA/TolQ/ExbB proton channel family DKE42_016520 PF00551 Formyl transferase DKE42_016520 PF01842 ACT domain DKE42_016535 PF00830 Ribosomal L28 family DKE42_016545 PF02254 TrkA-N domain DKE42_016545 PF00999 Sodium/hydrogen exchanger family DKE42_016565 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DKE42_016585 PF01396 Topoisomerase DNA binding C4 zinc finger DKE42_016585 PF08272 Topoisomerase I zinc-ribbon-like DKE42_016585 PF01131 DNA topoisomerase DKE42_016585 PF01751 Toprim domain DKE42_016595 PF01638 HxlR-like helix-turn-helix DKE42_016600 PF00107 Zinc-binding dehydrogenase DKE42_016600 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_016605 PF04102 SlyX DKE42_016620 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE42_016640 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKE42_016640 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKE42_016660 PF01416 tRNA pseudouridine synthase DKE42_016670 PF01176 Translation initiation factor 1A / IF-1 DKE42_016685 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE42_016700 PF00330 Aconitase family (aconitate hydratase) DKE42_016710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_016710 PF03466 LysR substrate binding domain DKE42_016735 PF00293 NUDIX domain DKE42_016765 PF02798 Glutathione S-transferase, N-terminal domain DKE42_016770 PF08279 HTH domain DKE42_016770 PF13280 WYL domain DKE42_016775 PF13419 Haloacid dehalogenase-like hydrolase DKE42_016780 PF01479 S4 domain DKE42_016780 PF00849 RNA pseudouridylate synthase DKE42_016790 PF00501 AMP-binding enzyme DKE42_016790 PF13193 AMP-binding enzyme C-terminal domain DKE42_016805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE42_016805 PF03466 LysR substrate binding domain DKE42_016815 PF06969 HemN C-terminal domain DKE42_016815 PF04055 Radical SAM superfamily DKE42_016835 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE42_016835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_016865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DKE42_016865 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE42_016875 PF03884 DNA gyrase inhibitor YacG DKE42_016880 PF00753 Metallo-beta-lactamase superfamily DKE42_016885 PF00762 Ferrochelatase DKE42_016895 PF01177 Asp/Glu/Hydantoin racemase DKE42_016915 PF01206 Sulfurtransferase TusA DKE42_016920 PF00571 CBS domain DKE42_016920 PF03471 Transporter associated domain DKE42_016930 PF01588 Putative tRNA binding domain DKE42_016960 PF01430 Hsp33 protein DKE42_016980 PF01544 CorA-like Mg2+ transporter protein DKE42_016990 PF00312 Ribosomal protein S15 DKE42_017000 PF13538 UvrD-like helicase C-terminal domain DKE42_017030 PF01209 ubiE/COQ5 methyltransferase family DKE42_017045 PF01494 FAD binding domain DKE42_017050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE42_017080 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE42_017095 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE42_017105 PF02033 Ribosome-binding factor A DKE42_017120 PF17384 RimP C-terminal SH3 domain DKE42_017120 PF02576 RimP N-terminal domain DKE42_017140 PF03840 Preprotein translocase SecG subunit DKE42_017145 PF00121 Triosephosphate isomerase DKE42_017165 PF01121 Dephospho-CoA kinase DKE42_017175 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE42_017175 PF00588 SpoU rRNA Methylase family DKE42_017190 PF02463 RecF/RecN/SMC N terminal domain DKE42_017235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE42_017235 PF12833 Helix-turn-helix domain DKE42_017235 PF02805 Metal binding domain of Ada DKE42_017235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE42_017240 PF01066 CDP-alcohol phosphatidyltransferase DKE42_017250 PF02151 UvrB/uvrC motif DKE42_017250 PF08459 UvrC Helix-hairpin-helix N-terminal DKE42_017250 PF01541 GIY-YIG catalytic domain DKE42_017285 PF00108 Thiolase, N-terminal domain DKE42_017285 PF02803 Thiolase, C-terminal domain DKE42_017325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_017325 PF00183 Hsp90 protein DKE42_017340 PF13726 Na+-H+ antiporter family DKE42_017340 PF03553 Na+/H+ antiporter family DKE42_017375 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE42_017375 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE42_017380 PF00466 Ribosomal protein L10 DKE42_017385 PF00687 Ribosomal protein L1p/L10e family DKE42_017390 PF00298 Ribosomal protein L11, RNA binding domain DKE42_017390 PF03946 Ribosomal protein L11, N-terminal domain DKE42_017395 PF02357 Transcription termination factor nusG DKE42_017395 PF00467 KOW motif DKE42_017435 PF00425 chorismate binding enzyme DKE42_017435 PF04715 Anthranilate synthase component I, N terminal region DKE42_017445 PF12401 Protein of unknown function (DUF2662) DKE42_017445 PF00498 FHA domain DKE42_017465 PF00816 H-NS histone family DKE42_017490 PF03900 Porphobilinogen deaminase, C-terminal domain DKE42_017490 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKE42_017505 PF00206 Lyase DKE42_017505 PF14698 Argininosuccinate lyase C-terminal DKE42_017510 PF04362 Bacterial Fe(2+) trafficking DKE42_017515 PF01895 PhoU domain DKE42_017555 PF00149 Calcineurin-like phosphoesterase DKE42_017560 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE42_017565 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE42_017570 PF01098 Cell cycle protein DKE42_017595 PF00589 Phage integrase family DKE42_017595 PF02899 Phage integrase, N-terminal SAM-like domain DKE42_017600 PF13098 Thioredoxin-like domain DKE42_017600 PF10411 Disulfide bond isomerase protein N-terminus DKE42_017605 PF03447 Homoserine dehydrogenase, NAD binding domain DKE42_017605 PF00742 Homoserine dehydrogenase DKE42_017605 PF01842 ACT domain DKE42_017610 PF00291 Pyridoxal-phosphate dependent enzyme DKE42_017615 PF00768 D-alanyl-D-alanine carboxypeptidase DKE42_017625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE42_017625 PF00512 His Kinase A (phospho-acceptor) domain DKE42_017635 PF03572 Peptidase family S41 DKE42_017635 PF00595 PDZ domain DKE42_017640 PF01676 Metalloenzyme superfamily DKE42_017640 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DKE42_017675 PF00677 Lumazine binding domain DKE42_017690 PF03477 ATP cone domain DKE42_017695 PF00909 Ammonium Transporter Family DKE42_017710 PF13335 Magnesium chelatase, subunit ChlI C-terminal DKE42_017710 PF01078 Magnesium chelatase, subunit ChlI DKE42_017715 PF03358 NADPH-dependent FMN reductase DKE42_017725 PF00596 Class II Aldolase and Adducin N-terminal domain DKE42_017730 PF00701 Dihydrodipicolinate synthetase family DKE42_017745 PF03573 outer membrane porin, OprD family DKE42_017750 PF00719 Inorganic pyrophosphatase DKE42_017775 PF07690 Major Facilitator Superfamily DKE42_017780 PF03458 UPF0126 domain DKE42_017790 PF03741 Integral membrane protein TerC family DKE42_017790 PF03471 Transporter associated domain DKE42_017795 PF03641 Possible lysine decarboxylase DKE42_017800 PF07690 Major Facilitator Superfamily DKE42_017845 PF03358 NADPH-dependent FMN reductase DKE42_017890 PF00440 Bacterial regulatory proteins, tetR family DKE42_017915 PF01327 Polypeptide deformylase DKE42_017930 PF01300 Telomere recombination DKE42_017935 PF00892 EamA-like transporter family DKE42_017965 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE42_017970 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE42_017970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE42_017975 PF00231 ATP synthase DKE42_017985 PF00213 ATP synthase delta (OSCP) subunit DKE42_017990 PF00430 ATP synthase B/B' CF(0) DKE42_017995 PF00137 ATP synthase subunit C DKE42_018020 PF00005 ABC transporter DKE42_018025 PF00950 ABC 3 transport family DKE42_018030 PF01810 LysE type translocator DKE42_018040 PF03949 Malic enzyme, NAD binding domain DKE42_018040 PF00390 Malic enzyme, N-terminal domain DKE42_018050 PF03485 Arginyl tRNA synthetase N terminal domain DKE42_018050 PF00750 tRNA synthetases class I (R) DKE42_018050 PF05746 DALR anticodon binding domain DKE42_018070 PF02678 Pirin DKE42_018070 PF05726 Pirin C-terminal cupin domain DKE42_018080 PF03551 Transcriptional regulator PadR-like family DKE42_018085 PF13427 Domain of unknown function (DUF4111) DKE42_018085 PF01909 Nucleotidyltransferase domain DKE42_018090 PF00958 GMP synthase C terminal domain DKE42_018090 PF00117 Glutamine amidotransferase class-I DKE42_018090 PF02540 NAD synthase DKE42_018100 PF07681 DoxX DKE42_018105 PF09335 SNARE associated Golgi protein DKE42_018130 PF01722 BolA-like protein DKE42_018180 PF00550 Phosphopantetheine attachment site DKE42_018180 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE42_018180 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE42_018180 PF08242 Methyltransferase domain DKE42_018180 PF16197 Ketoacyl-synthetase C-terminal extension DKE42_018180 PF00975 Thioesterase domain DKE42_018180 PF14765 Polyketide synthase dehydratase DKE42_018205 PF00765 Autoinducer synthase DKE42_018210 PF00155 Aminotransferase class I and II DKE42_018210 PF00392 Bacterial regulatory proteins, gntR family DKE42_018225 PF00324 Amino acid permease DKE42_018230 PF00892 EamA-like transporter family DKE42_018250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE42_018250 PF02770 Acyl-CoA dehydrogenase, middle domain DKE42_018250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE42_018280 PF00324 Amino acid permease DKE42_018285 PF01042 Endoribonuclease L-PSP DKE42_018300 PF01037 Lrp/AsnC ligand binding domain DKE42_018325 PF00849 RNA pseudouridylate synthase DKE42_018375 PF13276 HTH-like domain DKE42_018375 PF00665 Integrase core domain DKE42_018375 PF13333 Integrase core domain DKE42_018415 PF00285 Citrate synthase, C-terminal domain DKE42_018425 PF07729 FCD domain DKE42_018425 PF00392 Bacterial regulatory proteins, gntR family DKE42_018435 PF00155 Aminotransferase class I and II DKE42_018445 PF01070 FMN-dependent dehydrogenase DKE42_018455 PF02652 L-lactate permease DKE42_018485 PF00483 Nucleotidyl transferase DKE42_018490 PF02397 Bacterial sugar transferase DKE42_018515 PF01943 Polysaccharide biosynthesis protein DKE42_018520 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DKE42_018530 PF04321 RmlD substrate binding domain DKE42_018550 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE42_018555 PF13614 AAA domain DKE42_018555 PF02706 Chain length determinant protein DKE42_018555 PF13807 G-rich domain on putative tyrosine kinase DKE42_018575 PF01510 N-acetylmuramoyl-L-alanine amidase DKE42_018580 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DKE42_018580 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DKE42_018595 PF01138 3' exoribonuclease family, domain 1 DKE42_018595 PF03725 3' exoribonuclease family, domain 2 DKE42_018605 PF00175 Oxidoreductase NAD-binding domain DKE42_018615 PF08360 QacR-like protein, C-terminal region DKE42_018615 PF00440 Bacterial regulatory proteins, tetR family DKE42_018620 PF01323 DSBA-like thioredoxin domain DKE42_018630 PF13419 Haloacid dehalogenase-like hydrolase DKE42_018635 PF00106 short chain dehydrogenase DKE42_018680 PF08362 YcdC-like protein, C-terminal region DKE42_018680 PF00440 Bacterial regulatory proteins, tetR family DKE42_018710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE42_018755 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE42_018830 PF02875 Mur ligase family, glutamate ligase domain DKE42_018830 PF08245 Mur ligase middle domain DKE42_018830 PF01225 Mur ligase family, catalytic domain DKE42_018845 PF03741 Integral membrane protein TerC family DKE42_018870 PF01979 Amidohydrolase family DKE42_018875 PF00156 Phosphoribosyl transferase domain DKE42_018890 PF16916 Dimerisation domain of Zinc Transporter DKE42_018890 PF01545 Cation efflux family DKE42_018895 PF02583 Metal-sensitive transcriptional repressor DKE42_018900 PF10396 GTP-binding protein TrmE N-terminus DKE42_018900 PF12631 MnmE helical domain DKE42_018900 PF01926 50S ribosome-binding GTPase DKE42_018910 PF01809 Putative membrane protein insertion efficiency factor DKE42_018920 PF00468 Ribosomal protein L34 DKE42_018935 PF01321 Creatinase/Prolidase N-terminal domain DKE42_018935 PF00557 Metallopeptidase family M24 DKE42_018955 PF16197 Ketoacyl-synthetase C-terminal extension DKE42_018955 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE42_018955 PF08659 KR domain DKE42_018955 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_018955 PF00550 Phosphopantetheine attachment site DKE42_018955 PF14765 Polyketide synthase dehydratase DKE42_018955 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE42_018955 PF00698 Acyl transferase domain DKE42_019025 PF04221 RelB antitoxin DKE42_019040 PF05973 Phage derived protein Gp49-like (DUF891) DKE42_019325 PF17762 HTH domain found in ParB protein DKE42_019325 PF02195 ParB-like nuclease domain DKE42_019330 PF13614 AAA domain DKE42_019360 PF00107 Zinc-binding dehydrogenase DKE42_019360 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_019365 PF08240 Alcohol dehydrogenase GroES-like domain DKE42_019365 PF00107 Zinc-binding dehydrogenase DKE42_019455 PF00756 Putative esterase DKE42_019465 PF02583 Metal-sensitive transcriptional repressor DKE42_019500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE42_019595 PF01381 Helix-turn-helix DKE42_019735 PF00717 Peptidase S24-like DKE42_019735 PF01726 LexA DNA binding domain DKE42_019740 PF11799 impB/mucB/samB family C-terminal domain DKE42_019740 PF13438 Domain of unknown function (DUF4113) DKE42_019740 PF00817 impB/mucB/samB family DKE42_019815 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DKE42_019820 PF01636 Phosphotransferase enzyme family DKE42_019900 PF02384 N-6 DNA Methylase DKE42_019900 PF12950 TaqI-like C-terminal specificity domain DKE42_019905 PF02384 N-6 DNA Methylase DKE42_019905 PF12950 TaqI-like C-terminal specificity domain