locus-tag class description DKE52_000010 PF02767 DNA polymerase III beta subunit, central domain DKE52_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain DKE52_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain DKE52_000055 PF01521 Iron-sulphur cluster biosynthesis DKE52_000135 PF00920 Dehydratase family DKE52_000195 PF01113 Dihydrodipicolinate reductase, N-terminus DKE52_000195 PF05173 Dihydrodipicolinate reductase, C-terminus DKE52_000215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_000215 PF03466 LysR substrate binding domain DKE52_000255 PF10576 Iron-sulfur binding domain of endonuclease III DKE52_000255 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE52_000255 PF14815 NUDIX domain DKE52_000255 PF00633 Helix-hairpin-helix motif DKE52_000270 PF07043 Protein of unknown function (DUF1328) DKE52_000275 PF03692 Putative zinc- or iron-chelating domain DKE52_000290 PF01226 Formate/nitrite transporter DKE52_000310 PF00701 Dihydrodipicolinate synthetase family DKE52_000315 PF00857 Isochorismatase family DKE52_000330 PF04463 Protein of unknown function (DUF523) DKE52_000390 PF05962 HutD DKE52_000510 PF00581 Rhodanese-like domain DKE52_000545 PF00072 Response regulator receiver domain DKE52_000545 PF00486 Transcriptional regulatory protein, C terminal DKE52_000555 PF00106 short chain dehydrogenase DKE52_000565 PF00155 Aminotransferase class I and II DKE52_000625 PF05728 Uncharacterised protein family (UPF0227) DKE52_000630 PF00204 DNA gyrase B DKE52_000630 PF00986 DNA gyrase B subunit, carboxyl terminus DKE52_000630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE52_000630 PF01751 Toprim domain DKE52_000635 PF04115 Ureidoglycolate lyase DKE52_000650 PF01494 FAD binding domain DKE52_000660 PF00860 Permease family DKE52_000665 PF00576 HIUase/Transthyretin family DKE52_000720 PF03372 Endonuclease/Exonuclease/phosphatase family DKE52_000745 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DKE52_000745 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DKE52_000750 PF04101 Glycosyltransferase family 28 C-terminal domain DKE52_000750 PF03033 Glycosyltransferase family 28 N-terminal domain DKE52_000755 PF08245 Mur ligase middle domain DKE52_000755 PF01225 Mur ligase family, catalytic domain DKE52_000755 PF02875 Mur ligase family, glutamate ligase domain DKE52_000760 PF01820 D-ala D-ala ligase N-terminus DKE52_000760 PF07478 D-ala D-ala ligase C-terminus DKE52_000765 PF08478 POTRA domain, FtsQ-type DKE52_000765 PF03799 Cell division protein FtsQ DKE52_000820 PF01613 Flavin reductase like domain DKE52_000820 PF00258 Flavodoxin DKE52_000900 PF01037 Lrp/AsnC ligand binding domain DKE52_000910 PF03358 NADPH-dependent FMN reductase DKE52_000915 PF00072 Response regulator receiver domain DKE52_000915 PF00196 Bacterial regulatory proteins, luxR family DKE52_000965 PF00440 Bacterial regulatory proteins, tetR family DKE52_000965 PF16925 Tetracyclin repressor-like, C-terminal domain DKE52_000985 PF02581 Thiamine monophosphate synthase DKE52_000985 PF03070 TENA/THI-4/PQQC family DKE52_000985 PF08543 Phosphomethylpyrimidine kinase DKE52_001000 PF00436 Single-strand binding protein family DKE52_001020 PF00324 Amino acid permease DKE52_001045 PF00857 Isochorismatase family DKE52_001050 PF05726 Pirin C-terminal cupin domain DKE52_001050 PF02678 Pirin DKE52_001055 PF01593 Flavin containing amine oxidoreductase DKE52_001115 PF00248 Aldo/keto reductase family DKE52_001195 PF02705 K+ potassium transporter DKE52_001230 PF00230 Major intrinsic protein DKE52_001245 PF00977 Histidine biosynthesis protein DKE52_001250 PF01636 Phosphotransferase enzyme family DKE52_001265 PF03992 Antibiotic biosynthesis monooxygenase DKE52_001270 PF00892 EamA-like transporter family DKE52_001285 PF00977 Histidine biosynthesis protein DKE52_001300 PF00117 Glutamine amidotransferase class-I DKE52_001345 PF00486 Transcriptional regulatory protein, C terminal DKE52_001345 PF00072 Response regulator receiver domain DKE52_001360 PF00106 short chain dehydrogenase DKE52_001485 PF01795 MraW methylase family DKE52_001500 PF01225 Mur ligase family, catalytic domain DKE52_001500 PF08245 Mur ligase middle domain DKE52_001500 PF02875 Mur ligase family, glutamate ligase domain DKE52_001510 PF00953 Glycosyl transferase family 4 DKE52_001605 PF07963 Prokaryotic N-terminal methylation motif DKE52_001605 PF00114 Pilin (bacterial filament) DKE52_001620 PF04324 BFD-like [2Fe-2S] binding domain DKE52_001630 PF01042 Endoribonuclease L-PSP DKE52_001645 PF01192 RNA polymerase Rpb6 DKE52_001700 PF01782 RimM N-terminal domain DKE52_001700 PF05239 PRC-barrel domain DKE52_001705 PF01746 tRNA (Guanine-1)-methyltransferase DKE52_001710 PF01245 Ribosomal protein L19 DKE52_001715 PF00561 alpha/beta hydrolase fold DKE52_001745 PF00892 EamA-like transporter family DKE52_001750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE52_001750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE52_001765 PF03992 Antibiotic biosynthesis monooxygenase DKE52_001805 PF13614 AAA domain DKE52_001840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKE52_001840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKE52_001865 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DKE52_001895 PF03466 LysR substrate binding domain DKE52_001895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_001920 PF02091 Glycyl-tRNA synthetase alpha subunit DKE52_001950 PF04024 PspC domain DKE52_001975 PF01218 Coproporphyrinogen III oxidase DKE52_002010 PF02405 Permease MlaE DKE52_002030 PF01544 CorA-like Mg2+ transporter protein DKE52_002035 PF03641 Possible lysine decarboxylase DKE52_002040 PF00293 NUDIX domain DKE52_002095 PF00970 Oxidoreductase FAD-binding domain DKE52_002095 PF00042 Globin DKE52_002095 PF00175 Oxidoreductase NAD-binding domain DKE52_002110 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE52_002120 PF00338 Ribosomal protein S10p/S20e DKE52_002125 PF00297 Ribosomal protein L3 DKE52_002130 PF00573 Ribosomal protein L4/L1 family DKE52_002135 PF00276 Ribosomal protein L23 DKE52_002140 PF00181 Ribosomal Proteins L2, RNA binding domain DKE52_002140 PF03947 Ribosomal Proteins L2, C-terminal domain DKE52_002145 PF00203 Ribosomal protein S19 DKE52_002160 PF00252 Ribosomal protein L16p/L10e DKE52_002165 PF00831 Ribosomal L29 protein DKE52_002190 PF00253 Ribosomal protein S14p/S29e DKE52_002200 PF00347 Ribosomal protein L6 DKE52_002205 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE52_002210 PF00333 Ribosomal protein S5, N-terminal domain DKE52_002210 PF03719 Ribosomal protein S5, C-terminal domain DKE52_002215 PF00327 Ribosomal protein L30p/L7e DKE52_002220 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE52_002230 PF00444 Ribosomal protein L36 DKE52_002235 PF00416 Ribosomal protein S13/S18 DKE52_002255 PF01196 Ribosomal protein L17 DKE52_002265 PF02770 Acyl-CoA dehydrogenase, middle domain DKE52_002265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE52_002265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE52_002270 PF03937 Flavinator of succinate dehydrogenase DKE52_002300 PF09526 Probable metal-binding protein (DUF2387) DKE52_002360 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE52_002410 PF10145 Phage-related minor tail protein DKE52_002410 PF01551 Peptidase family M23 DKE52_002410 PF01464 Transglycosylase SLT domain DKE52_002420 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE52_002420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE52_002445 PF01066 CDP-alcohol phosphatidyltransferase DKE52_002495 PF17932 Tetracyclin repressor-like, C-terminal domain DKE52_002495 PF00440 Bacterial regulatory proteins, tetR family DKE52_002580 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKE52_002585 PF00398 Ribosomal RNA adenine dimethylase DKE52_002590 PF00398 Ribosomal RNA adenine dimethylase DKE52_002645 PF13689 YfiR/HmsC-like DKE52_002695 PF00753 Metallo-beta-lactamase superfamily DKE52_002695 PF04273 Putative phosphatase (DUF442) DKE52_002705 PF00085 Thioredoxin DKE52_002710 PF03061 Thioesterase superfamily DKE52_002790 PF00665 Integrase core domain DKE52_002790 PF13333 Integrase core domain DKE52_002790 PF13276 HTH-like domain DKE52_002935 PF04279 Intracellular septation protein A DKE52_002960 PF07549 SecD/SecF GG Motif DKE52_002960 PF02355 Protein export membrane protein DKE52_002970 PF02699 Preprotein translocase subunit DKE52_003005 PF08335 GlnD PII-uridylyltransferase DKE52_003005 PF03710 Glutamate-ammonia ligase adenylyltransferase DKE52_003095 PF06146 Phosphate-starvation-inducible E DKE52_003105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_003105 PF03466 LysR substrate binding domain DKE52_003160 PF01923 Cobalamin adenosyltransferase DKE52_003200 PF00290 Tryptophan synthase alpha chain DKE52_003205 PF01039 Carboxyl transferase domain DKE52_003230 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE52_003230 PF00578 AhpC/TSA family DKE52_003260 PF13673 Acetyltransferase (GNAT) domain DKE52_003285 PF12833 Helix-turn-helix domain DKE52_003285 PF02311 AraC-like ligand binding domain DKE52_003290 PF02515 CoA-transferase family III DKE52_003305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE52_003305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE52_003335 PF00691 OmpA family DKE52_003335 PF13505 Outer membrane protein beta-barrel domain DKE52_003345 PF00324 Amino acid permease DKE52_003365 PF01741 Large-conductance mechanosensitive channel, MscL DKE52_003385 PF02245 Methylpurine-DNA glycosylase (MPG) DKE52_003390 PF00593 TonB dependent receptor DKE52_003390 PF07715 TonB-dependent Receptor Plug Domain DKE52_003395 PF07715 TonB-dependent Receptor Plug Domain DKE52_003395 PF00593 TonB dependent receptor DKE52_003450 PF01613 Flavin reductase like domain DKE52_003455 PF01042 Endoribonuclease L-PSP DKE52_003465 PF00296 Luciferase-like monooxygenase DKE52_003480 PF04343 Protein of unknown function, DUF488 DKE52_003490 PF07411 Domain of unknown function (DUF1508) DKE52_003515 PF00072 Response regulator receiver domain DKE52_003520 PF00072 Response regulator receiver domain DKE52_003530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKE52_003530 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DKE52_003560 PF04304 Protein of unknown function (DUF454) DKE52_003655 PF13291 ACT domain DKE52_003655 PF00291 Pyridoxal-phosphate dependent enzyme DKE52_003700 PF02686 Glu-tRNAGln amidotransferase C subunit DKE52_003710 PF04085 rod shape-determining protein MreC DKE52_003715 PF04093 rod shape-determining protein MreD DKE52_003720 PF02545 Maf-like protein DKE52_003740 PF01507 Phosphoadenosine phosphosulfate reductase family DKE52_003775 PF02673 Bacitracin resistance protein BacA DKE52_003785 PF14765 Polyketide synthase dehydratase DKE52_003785 PF00698 Acyl transferase domain DKE52_003785 PF16197 Ketoacyl-synthetase C-terminal extension DKE52_003785 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE52_003785 PF08240 Alcohol dehydrogenase GroES-like domain DKE52_003785 PF08990 Erythronolide synthase docking DKE52_003785 PF09277 Erythronolide synthase, docking DKE52_003785 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE52_003785 PF08659 KR domain DKE52_003785 PF00550 Phosphopantetheine attachment site DKE52_003810 PF04303 PrpF protein DKE52_003825 PF01145 SPFH domain / Band 7 family DKE52_003860 PF00884 Sulfatase DKE52_003860 PF08019 Phosphoethanolamine transferase EptA/EptB DKE52_003890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_003890 PF03466 LysR substrate binding domain DKE52_003910 PF02223 Thymidylate kinase DKE52_003970 PF00873 AcrB/AcrD/AcrF family DKE52_003980 PF01569 PAP2 superfamily DKE52_004000 PF00829 Ribosomal prokaryotic L21 protein DKE52_004010 PF03548 Outer membrane lipoprotein carrier protein LolA DKE52_004030 PF00588 SpoU rRNA Methylase family DKE52_004060 PF03358 NADPH-dependent FMN reductase DKE52_004085 PF04359 Protein of unknown function (DUF493) DKE52_004125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE52_004140 PF13085 2Fe-2S iron-sulfur cluster binding domain DKE52_004395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE52_004405 PF00582 Universal stress protein family DKE52_004415 PF01042 Endoribonuclease L-PSP DKE52_004425 PF03449 Transcription elongation factor, N-terminal DKE52_004425 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE52_004435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKE52_004435 PF00117 Glutamine amidotransferase class-I DKE52_004515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DKE52_004515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DKE52_004575 PF00166 Chaperonin 10 Kd subunit DKE52_004585 PF01219 Prokaryotic diacylglycerol kinase DKE52_004610 PF01435 Peptidase family M48 DKE52_004615 PF01464 Transglycosylase SLT domain DKE52_004720 PF00881 Nitroreductase family DKE52_004745 PF02634 FdhD/NarQ family DKE52_004795 PF01678 Diaminopimelate epimerase DKE52_004800 PF03747 ADP-ribosylglycohydrolase DKE52_004845 PF13533 Biotin-lipoyl like DKE52_004860 PF00266 Aminotransferase class-V DKE52_004870 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE52_004900 PF01343 Peptidase family S49 DKE52_004900 PF06965 Na+/H+ antiporter 1 DKE52_004905 PF12697 Alpha/beta hydrolase family DKE52_004910 PF00551 Formyl transferase DKE52_004915 PF02769 AIR synthase related protein, C-terminal domain DKE52_004915 PF00586 AIR synthase related protein, N-terminal domain DKE52_004925 PF00308 Bacterial dnaA protein DKE52_004925 PF08299 Bacterial dnaA protein helix-turn-helix DKE52_004925 PF11638 DnaA N-terminal domain DKE52_004975 PF00691 OmpA family DKE52_004980 PF04052 TolB amino-terminal domain DKE52_004980 PF07676 WD40-like Beta Propeller Repeat DKE52_004990 PF02472 Biopolymer transport protein ExbD/TolR DKE52_005000 PF03061 Thioesterase superfamily DKE52_005010 PF17864 RuvB AAA lid domain DKE52_005010 PF05491 RuvB C-terminal winged helix domain DKE52_005010 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKE52_005025 PF02769 AIR synthase related protein, C-terminal domain DKE52_005025 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DKE52_005025 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DKE52_005040 PF00378 Enoyl-CoA hydratase/isomerase DKE52_005045 PF00293 NUDIX domain DKE52_005045 PF01467 Cytidylyltransferase-like DKE52_005075 PF06508 Queuosine biosynthesis protein QueC DKE52_005095 PF03466 LysR substrate binding domain DKE52_005095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_005100 PF12857 TOBE-like domain DKE52_005100 PF00005 ABC transporter DKE52_005110 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_005135 PF02223 Thymidylate kinase DKE52_005145 PF00890 FAD binding domain DKE52_005145 PF02910 Fumarate reductase flavoprotein C-term DKE52_005195 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKE52_005200 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DKE52_005230 PF00892 EamA-like transporter family DKE52_005255 PF00271 Helicase conserved C-terminal domain DKE52_005255 PF04851 Type III restriction enzyme, res subunit DKE52_005255 PF17757 UvrB interaction domain DKE52_005255 PF02151 UvrB/uvrC motif DKE52_005255 PF12344 Ultra-violet resistance protein B DKE52_005265 PF00892 EamA-like transporter family DKE52_005360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE52_005385 PF00849 RNA pseudouridylate synthase DKE52_005415 PF02567 Phenazine biosynthesis-like protein DKE52_005455 PF00202 Aminotransferase class-III DKE52_005465 PF00849 RNA pseudouridylate synthase DKE52_005485 PF00175 Oxidoreductase NAD-binding domain DKE52_005485 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE52_005485 PF00970 Oxidoreductase FAD-binding domain DKE52_005490 PF00487 Fatty acid desaturase DKE52_005510 PF00171 Aldehyde dehydrogenase family DKE52_005520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE52_005520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE52_005520 PF00205 Thiamine pyrophosphate enzyme, central domain DKE52_005565 PF08328 Adenylosuccinate lyase C-terminal DKE52_005565 PF00206 Lyase DKE52_005580 PF00293 NUDIX domain DKE52_005580 PF13344 Haloacid dehalogenase-like hydrolase DKE52_005585 PF00132 Bacterial transferase hexapeptide (six repeats) DKE52_005590 PF07943 Penicillin-binding protein 5, C-terminal domain DKE52_005590 PF00768 D-alanyl-D-alanine carboxypeptidase DKE52_005605 PF01975 Survival protein SurE DKE52_005615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_005615 PF03466 LysR substrate binding domain DKE52_005630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE52_005640 PF01197 Ribosomal protein L31 DKE52_005655 PF04055 Radical SAM superfamily DKE52_005670 PF04328 Selenoprotein, putative DKE52_005685 PF18073 Rubredoxin metal binding domain DKE52_005730 PF02678 Pirin DKE52_005730 PF17954 Quercetinase C-terminal cupin domain DKE52_005740 PF13193 AMP-binding enzyme C-terminal domain DKE52_005740 PF00668 Condensation domain DKE52_005740 PF00501 AMP-binding enzyme DKE52_005740 PF00550 Phosphopantetheine attachment site DKE52_005760 PF00005 ABC transporter DKE52_005810 PF00005 ABC transporter DKE52_005810 PF00664 ABC transporter transmembrane region DKE52_005840 PF01208 Uroporphyrinogen decarboxylase (URO-D) DKE52_005865 PF01227 GTP cyclohydrolase I DKE52_005895 PF02885 Glycosyl transferase family, helical bundle domain DKE52_005895 PF00591 Glycosyl transferase family, a/b domain DKE52_005915 PF00117 Glutamine amidotransferase class-I DKE52_005975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE52_005975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE52_005990 PF12627 Probable RNA and SrmB- binding site of polymerase A DKE52_005990 PF01743 Poly A polymerase head domain DKE52_005995 PF01515 Phosphate acetyl/butaryl transferase DKE52_005995 PF03949 Malic enzyme, NAD binding domain DKE52_005995 PF00390 Malic enzyme, N-terminal domain DKE52_006005 PF04452 RNA methyltransferase DKE52_006035 PF04055 Radical SAM superfamily DKE52_006050 PF07690 Major Facilitator Superfamily DKE52_006060 PF00557 Metallopeptidase family M24 DKE52_006100 PF05036 Sporulation related domain DKE52_006100 PF03330 Lytic transglycolase DKE52_006125 PF01061 ABC-2 type transporter DKE52_006185 PF02954 Bacterial regulatory protein, Fis family DKE52_006205 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DKE52_006235 PF01695 IstB-like ATP binding protein DKE52_006460 PF02321 Outer membrane efflux protein DKE52_006475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_006475 PF03466 LysR substrate binding domain DKE52_006500 PF00893 Small Multidrug Resistance protein DKE52_006505 PF00037 4Fe-4S binding domain DKE52_006525 PF00175 Oxidoreductase NAD-binding domain DKE52_006525 PF00970 Oxidoreductase FAD-binding domain DKE52_006555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE52_006555 PF00512 His Kinase A (phospho-acceptor) domain DKE52_006555 PF08521 Two-component sensor kinase N-terminal DKE52_006585 PF07023 Protein of unknown function (DUF1315) DKE52_006590 PF02885 Glycosyl transferase family, helical bundle domain DKE52_006590 PF00591 Glycosyl transferase family, a/b domain DKE52_006605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE52_006605 PF02770 Acyl-CoA dehydrogenase, middle domain DKE52_006605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE52_006630 PF01546 Peptidase family M20/M25/M40 DKE52_006630 PF07687 Peptidase dimerisation domain DKE52_006650 PF01139 tRNA-splicing ligase RtcB DKE52_006670 PF03883 Peroxide stress protein YaaA DKE52_006700 PF00313 'Cold-shock' DNA-binding domain DKE52_006705 PF00271 Helicase conserved C-terminal domain DKE52_006705 PF00270 DEAD/DEAH box helicase DKE52_006715 PF00881 Nitroreductase family DKE52_006775 PF09424 Yqey-like protein DKE52_006805 PF00069 Protein kinase domain DKE52_006805 PF03793 PASTA domain DKE52_006845 PF00561 alpha/beta hydrolase fold DKE52_006850 PF03616 Sodium/glutamate symporter DKE52_006920 PF00486 Transcriptional regulatory protein, C terminal DKE52_006920 PF00072 Response regulator receiver domain DKE52_006985 PF01177 Asp/Glu/Hydantoin racemase DKE52_007000 PF05853 beta-keto acid cleavage enzyme DKE52_007005 PF07690 Major Facilitator Superfamily DKE52_007065 PF00375 Sodium:dicarboxylate symporter family DKE52_007075 PF00753 Metallo-beta-lactamase superfamily DKE52_007075 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKE52_007085 PF00005 ABC transporter DKE52_007085 PF09383 NIL domain DKE52_007105 PF02954 Bacterial regulatory protein, Fis family DKE52_007145 PF01841 Transglutaminase-like superfamily DKE52_007145 PF08379 Bacterial transglutaminase-like N-terminal region DKE52_007170 PF01084 Ribosomal protein S18 DKE52_007175 PF01250 Ribosomal protein S6 DKE52_007185 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKE52_007190 PF00510 Cytochrome c oxidase subunit III DKE52_007210 PF00391 PEP-utilising enzyme, mobile domain DKE52_007210 PF02896 PEP-utilising enzyme, TIM barrel domain DKE52_007210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DKE52_007215 PF03618 Kinase/pyrophosphorylase DKE52_007235 PF13994 PgaD-like protein DKE52_007275 PF17827 PrmC N-terminal domain DKE52_007275 PF13847 Methyltransferase domain DKE52_007310 PF00899 ThiF family DKE52_007320 PF02152 Dihydroneopterin aldolase DKE52_007330 PF03814 Potassium-transporting ATPase A subunit DKE52_007340 PF02669 K+-transporting ATPase, c chain DKE52_007400 PF02463 RecF/RecN/SMC N terminal domain DKE52_007470 PF01479 S4 domain DKE52_007470 PF00849 RNA pseudouridylate synthase DKE52_007490 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DKE52_007505 PF17209 Hfq protein DKE52_007530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE52_007540 PF00117 Glutamine amidotransferase class-I DKE52_007540 PF00958 GMP synthase C terminal domain DKE52_007540 PF02540 NAD synthase DKE52_007555 PF13520 Amino acid permease DKE52_007590 PF02110 Hydroxyethylthiazole kinase family DKE52_007645 PF01817 Chorismate mutase type II DKE52_007660 PF07715 TonB-dependent Receptor Plug Domain DKE52_007660 PF07660 Secretin and TonB N terminus short domain DKE52_007660 PF00593 TonB dependent receptor DKE52_007730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_007730 PF03466 LysR substrate binding domain DKE52_007805 PF03594 Benzoate membrane transport protein DKE52_007810 PF01037 Lrp/AsnC ligand binding domain DKE52_007835 PF02803 Thiolase, C-terminal domain DKE52_007835 PF00108 Thiolase, N-terminal domain DKE52_007885 PF03061 Thioesterase superfamily DKE52_007890 PF00465 Iron-containing alcohol dehydrogenase DKE52_007915 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE52_007945 PF01645 Conserved region in glutamate synthase DKE52_008370 PF01381 Helix-turn-helix DKE52_008385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE52_008385 PF00289 Biotin carboxylase, N-terminal domain DKE52_008385 PF02785 Biotin carboxylase C-terminal domain DKE52_008390 PF00364 Biotin-requiring enzyme DKE52_008395 PF01220 Dehydroquinase class II DKE52_008460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE52_008460 PF18267 Rubredoxin NAD+ reductase C-terminal domain DKE52_008460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE52_008460 PF04324 BFD-like [2Fe-2S] binding domain DKE52_008460 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE52_008470 PF12804 MobA-like NTP transferase domain DKE52_008495 PF02391 MoaE protein DKE52_008510 PF01638 HxlR-like helix-turn-helix DKE52_008545 PF16363 GDP-mannose 4,6 dehydratase DKE52_008565 PF00561 alpha/beta hydrolase fold DKE52_008595 PF02542 YgbB family DKE52_008645 PF01255 Putative undecaprenyl diphosphate synthase DKE52_008680 PF07977 FabA-like domain DKE52_008700 PF02631 RecX family DKE52_008715 PF13419 Haloacid dehalogenase-like hydrolase DKE52_008760 PF00916 Sulfate permease family DKE52_008760 PF01740 STAS domain DKE52_008850 PF00462 Glutaredoxin DKE52_008855 PF00202 Aminotransferase class-III DKE52_008905 PF08173 Membrane bound YbgT-like protein DKE52_008910 PF02322 Cytochrome bd terminal oxidase subunit II DKE52_008915 PF01654 Cytochrome bd terminal oxidase subunit I DKE52_008925 PF07290 Protein of unknown function (DUF1449) DKE52_008980 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKE52_008980 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKE52_008990 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKE52_009055 PF00793 DAHP synthetase I family DKE52_009060 PF00113 Enolase, C-terminal TIM barrel domain DKE52_009060 PF03952 Enolase, N-terminal domain DKE52_009065 PF04239 Protein of unknown function (DUF421) DKE52_009075 PF07715 TonB-dependent Receptor Plug Domain DKE52_009075 PF00593 TonB dependent receptor DKE52_009080 PF04977 Septum formation initiator DKE52_009110 PF00561 alpha/beta hydrolase fold DKE52_009130 PF00775 Dioxygenase DKE52_009175 PF09339 IclR helix-turn-helix domain DKE52_009175 PF01614 Bacterial transcriptional regulator DKE52_009200 PF00106 short chain dehydrogenase DKE52_009285 PF12146 Serine aminopeptidase, S33 DKE52_009300 PF01144 Coenzyme A transferase DKE52_009310 PF02426 Muconolactone delta-isomerase DKE52_009375 PF01494 FAD binding domain DKE52_009405 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_009410 PF01979 Amidohydrolase family DKE52_009435 PF00376 MerR family regulatory protein DKE52_009435 PF09278 MerR, DNA binding DKE52_009445 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE52_009465 PF08359 YsiA-like protein, C-terminal region DKE52_009465 PF00440 Bacterial regulatory proteins, tetR family DKE52_009470 PF03466 LysR substrate binding domain DKE52_009470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_009490 PF01575 MaoC like domain DKE52_009595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE52_009595 PF01842 ACT domain DKE52_009595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE52_009635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_009635 PF03466 LysR substrate binding domain DKE52_009670 PF00171 Aldehyde dehydrogenase family DKE52_009675 PF00171 Aldehyde dehydrogenase family DKE52_009700 PF07690 Major Facilitator Superfamily DKE52_009705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE52_009705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE52_009725 PF00005 ABC transporter DKE52_009770 PF07690 Major Facilitator Superfamily DKE52_009855 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DKE52_009860 PF00027 Cyclic nucleotide-binding domain DKE52_009860 PF13545 Crp-like helix-turn-helix domain DKE52_009905 PF02472 Biopolymer transport protein ExbD/TolR DKE52_009925 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_009950 PF02472 Biopolymer transport protein ExbD/TolR DKE52_009955 PF01618 MotA/TolQ/ExbB proton channel family DKE52_009985 PF00005 ABC transporter DKE52_009990 PF02416 mttA/Hcf106 family DKE52_010005 PF00158 Sigma-54 interaction domain DKE52_010055 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE52_010055 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_010160 PF00486 Transcriptional regulatory protein, C terminal DKE52_010160 PF00072 Response regulator receiver domain DKE52_010165 PF00529 HlyD membrane-fusion protein of T1SS DKE52_010165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE52_010190 PF13186 Iron-sulfur cluster-binding domain DKE52_010190 PF04055 Radical SAM superfamily DKE52_010195 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE52_010205 PF12706 Beta-lactamase superfamily domain DKE52_010210 PF08042 PqqA family DKE52_010215 PF00149 Calcineurin-like phosphoesterase DKE52_010225 PF00550 Phosphopantetheine attachment site DKE52_010225 PF00857 Isochorismatase family DKE52_010230 PF00106 short chain dehydrogenase DKE52_010350 PF01381 Helix-turn-helix DKE52_010360 PF01420 Type I restriction modification DNA specificity domain DKE52_010430 PF00665 Integrase core domain DKE52_010520 PF03466 LysR substrate binding domain DKE52_010520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_010540 PF10415 Fumarase C C-terminus DKE52_010540 PF00206 Lyase DKE52_010625 PF00107 Zinc-binding dehydrogenase DKE52_010625 PF08240 Alcohol dehydrogenase GroES-like domain DKE52_010645 PF02779 Transketolase, pyrimidine binding domain DKE52_010645 PF02780 Transketolase, C-terminal domain DKE52_010650 PF00676 Dehydrogenase E1 component DKE52_010685 PF05175 Methyltransferase small domain DKE52_010750 PF02575 YbaB/EbfC DNA-binding family DKE52_010785 PF01230 HIT domain DKE52_010840 PF01925 Sulfite exporter TauE/SafE DKE52_010845 PF00793 DAHP synthetase I family DKE52_010955 PF02082 Transcriptional regulator DKE52_010965 PF01592 NifU-like N terminal domain DKE52_011025 PF13460 NAD(P)H-binding DKE52_011030 PF01649 Ribosomal protein S20 DKE52_011040 PF00459 Inositol monophosphatase family DKE52_011060 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE52_011060 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_011065 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_011070 PF01432 Peptidase family M3 DKE52_011110 PF02472 Biopolymer transport protein ExbD/TolR DKE52_011155 PF00216 Bacterial DNA-binding protein DKE52_011165 PF02224 Cytidylate kinase DKE52_011175 PF14437 MafB19-like deaminase DKE52_011230 PF09115 DNA polymerase III, delta subunit, C terminal DKE52_011240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DKE52_011245 PF00664 ABC transporter transmembrane region DKE52_011245 PF00005 ABC transporter DKE52_011295 PF01116 Fructose-bisphosphate aldolase class-II DKE52_011370 PF01597 Glycine cleavage H-protein DKE52_011375 PF02146 Sir2 family DKE52_011385 PF01037 Lrp/AsnC ligand binding domain DKE52_011395 PF04229 GrpB protein DKE52_011430 PF02780 Transketolase, C-terminal domain DKE52_011430 PF00456 Transketolase, thiamine diphosphate binding domain DKE52_011430 PF02779 Transketolase, pyrimidine binding domain DKE52_011435 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKE52_011435 PF02772 S-adenosylmethionine synthetase, central domain DKE52_011435 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKE52_011455 PF00905 Penicillin binding protein transpeptidase domain DKE52_011470 PF02075 Crossover junction endodeoxyribonuclease RuvC DKE52_011480 PF08331 Domain of unknown function (DUF1730) DKE52_011545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_011545 PF03466 LysR substrate binding domain DKE52_011565 PF00440 Bacterial regulatory proteins, tetR family DKE52_011575 PF01709 Transcriptional regulator DKE52_011580 PF01037 Lrp/AsnC ligand binding domain DKE52_011590 PF00005 ABC transporter DKE52_011645 PF09383 NIL domain DKE52_011645 PF00005 ABC transporter DKE52_011650 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_011680 PF03591 AzlC protein DKE52_011695 PF02222 ATP-grasp domain DKE52_011705 PF00155 Aminotransferase class I and II DKE52_011725 PF01641 SelR domain DKE52_011745 PF00710 Asparaginase, N-terminal DKE52_011745 PF17763 Glutaminase/Asparaginase C-terminal domain DKE52_011785 PF03466 LysR substrate binding domain DKE52_011785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_011790 PF03358 NADPH-dependent FMN reductase DKE52_011805 PF01022 Bacterial regulatory protein, arsR family DKE52_011810 PF03960 ArsC family DKE52_011830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_011830 PF03466 LysR substrate binding domain DKE52_011855 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_011865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKE52_011900 PF01654 Cytochrome bd terminal oxidase subunit I DKE52_011920 PF00392 Bacterial regulatory proteins, gntR family DKE52_011920 PF00155 Aminotransferase class I and II DKE52_011945 PF00698 Acyl transferase domain DKE52_011950 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DKE52_011990 PF02627 Carboxymuconolactone decarboxylase family DKE52_012025 PF04172 LrgB-like family DKE52_012035 PF03466 LysR substrate binding domain DKE52_012035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_012040 PF02798 Glutathione S-transferase, N-terminal domain DKE52_012040 PF14834 Glutathione S-transferase, C-terminal domain DKE52_012045 PF02798 Glutathione S-transferase, N-terminal domain DKE52_012060 PF00581 Rhodanese-like domain DKE52_012095 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE52_012105 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_012110 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_012145 PF01037 Lrp/AsnC ligand binding domain DKE52_012145 PF13404 AsnC-type helix-turn-helix domain DKE52_012155 PF00717 Peptidase S24-like DKE52_012240 PF07690 Major Facilitator Superfamily DKE52_012265 PF00440 Bacterial regulatory proteins, tetR family DKE52_012270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE52_012270 PF02770 Acyl-CoA dehydrogenase, middle domain DKE52_012270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE52_012320 PF07690 Major Facilitator Superfamily DKE52_012325 PF07690 Major Facilitator Superfamily DKE52_012360 PF00378 Enoyl-CoA hydratase/isomerase DKE52_012400 PF09339 IclR helix-turn-helix domain DKE52_012405 PF02515 CoA-transferase family III DKE52_012420 PF13419 Haloacid dehalogenase-like hydrolase DKE52_012425 PF00266 Aminotransferase class-V DKE52_012430 PF01266 FAD dependent oxidoreductase DKE52_012470 PF02525 Flavodoxin-like fold DKE52_012480 PF02627 Carboxymuconolactone decarboxylase family DKE52_012495 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DKE52_012505 PF00171 Aldehyde dehydrogenase family DKE52_012515 PF01613 Flavin reductase like domain DKE52_012520 PF12697 Alpha/beta hydrolase family DKE52_012585 PF00300 Histidine phosphatase superfamily (branch 1) DKE52_012605 PF03061 Thioesterase superfamily DKE52_012610 PF00132 Bacterial transferase hexapeptide (six repeats) DKE52_012635 PF00378 Enoyl-CoA hydratase/isomerase DKE52_012650 PF01883 Iron-sulfur cluster assembly protein DKE52_012660 PF06243 Phenylacetic acid degradation B DKE52_012665 PF05138 Phenylacetic acid catabolic protein DKE52_012675 PF03315 Serine dehydratase beta chain DKE52_012675 PF03313 Serine dehydratase alpha chain DKE52_012720 PF00392 Bacterial regulatory proteins, gntR family DKE52_012745 PF09278 MerR, DNA binding DKE52_012745 PF00376 MerR family regulatory protein DKE52_012755 PF02677 Epoxyqueuosine reductase QueH DKE52_012935 PF00005 ABC transporter DKE52_012950 PF08753 NikR C terminal nickel binding domain DKE52_012950 PF01402 Ribbon-helix-helix protein, copG family DKE52_012960 PF01638 HxlR-like helix-turn-helix DKE52_012985 PF00107 Zinc-binding dehydrogenase DKE52_012985 PF13823 Alcohol dehydrogenase GroES-associated DKE52_012985 PF08240 Alcohol dehydrogenase GroES-like domain DKE52_012990 PF08240 Alcohol dehydrogenase GroES-like domain DKE52_012990 PF00107 Zinc-binding dehydrogenase DKE52_012990 PF13823 Alcohol dehydrogenase GroES-associated DKE52_012995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKE52_012995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKE52_013030 PF01168 Alanine racemase, N-terminal domain DKE52_013040 PF00291 Pyridoxal-phosphate dependent enzyme DKE52_013050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE52_013050 PF00289 Biotin carboxylase, N-terminal domain DKE52_013050 PF00364 Biotin-requiring enzyme DKE52_013050 PF02785 Biotin carboxylase C-terminal domain DKE52_013065 PF03746 LamB/YcsF family DKE52_013095 PF05114 Protein of unknown function (DUF692) DKE52_013155 PF01638 HxlR-like helix-turn-helix DKE52_013185 PF00561 alpha/beta hydrolase fold DKE52_013220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_013220 PF03466 LysR substrate binding domain DKE52_013245 PF01292 Prokaryotic cytochrome b561 DKE52_013270 PF12146 Serine aminopeptidase, S33 DKE52_013275 PF12146 Serine aminopeptidase, S33 DKE52_013295 PF01037 Lrp/AsnC ligand binding domain DKE52_013300 PF13520 Amino acid permease DKE52_013335 PF00037 4Fe-4S binding domain DKE52_013335 PF11953 Domain of unknown function (DUF3470) DKE52_013345 PF01596 O-methyltransferase DKE52_013385 PF03968 OstA-like protein DKE52_013430 PF01638 HxlR-like helix-turn-helix DKE52_013510 PF01202 Shikimate kinase DKE52_013635 PF09278 MerR, DNA binding DKE52_013635 PF00376 MerR family regulatory protein DKE52_013660 PF06099 Phenol hydroxylase subunit DKE52_013670 PF02406 MmoB/DmpM family DKE52_013695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_013695 PF03466 LysR substrate binding domain DKE52_013725 PF00106 short chain dehydrogenase DKE52_013795 PF02390 Putative methyltransferase DKE52_013855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKE52_013855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKE52_013895 PF02566 OsmC-like protein DKE52_013905 PF13545 Crp-like helix-turn-helix domain DKE52_013905 PF00027 Cyclic nucleotide-binding domain DKE52_013925 PF00709 Adenylosuccinate synthetase DKE52_014275 PF01381 Helix-turn-helix DKE52_014275 PF00717 Peptidase S24-like DKE52_014335 PF00696 Amino acid kinase family DKE52_014335 PF13840 ACT domain DKE52_014335 PF01842 ACT domain DKE52_014340 PF02599 Global regulator protein family DKE52_014375 PF02678 Pirin DKE52_014375 PF17954 Quercetinase C-terminal cupin domain DKE52_014380 PF00440 Bacterial regulatory proteins, tetR family DKE52_014380 PF17932 Tetracyclin repressor-like, C-terminal domain DKE52_014390 PF00106 short chain dehydrogenase DKE52_014415 PF05681 Fumarate hydratase (Fumerase) DKE52_014480 PF00355 Rieske [2Fe-2S] domain DKE52_014555 PF00171 Aldehyde dehydrogenase family DKE52_014585 PF12833 Helix-turn-helix domain DKE52_014585 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE52_014590 PF00171 Aldehyde dehydrogenase family DKE52_014640 PF04958 Arginine N-succinyltransferase beta subunit DKE52_014645 PF00202 Aminotransferase class-III DKE52_014665 PF07729 FCD domain DKE52_014665 PF00392 Bacterial regulatory proteins, gntR family DKE52_014705 PF03783 Curli production assembly/transport component CsgG DKE52_014770 PF01979 Amidohydrolase family DKE52_014790 PF00593 TonB dependent receptor DKE52_014790 PF07715 TonB-dependent Receptor Plug Domain DKE52_014825 PF00929 Exonuclease DKE52_014845 PF04972 BON domain DKE52_014850 PF02021 Uncharacterised protein family UPF0102 DKE52_014880 PF13411 MerR HTH family regulatory protein DKE52_014950 PF02590 Predicted SPOUT methyltransferase DKE52_014955 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKE52_015015 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE52_015025 PF02814 UreE urease accessory protein, N-terminal domain DKE52_015025 PF05194 UreE urease accessory protein, C-terminal domain DKE52_015040 PF00699 Urease beta subunit DKE52_015045 PF00547 Urease, gamma subunit DKE52_015060 PF17185 NlpE C-terminal OB domain DKE52_015060 PF04170 NlpE N-terminal domain DKE52_015110 PF14052 Capsule assembly protein Wzi DKE52_015115 PF01336 OB-fold nucleic acid binding domain DKE52_015115 PF00152 tRNA synthetases class II (D, K and N) DKE52_015130 PF00301 Rubredoxin DKE52_015140 PF00561 alpha/beta hydrolase fold DKE52_015160 PF02503 Polyphosphate kinase middle domain DKE52_015160 PF17941 Polyphosphate kinase C-terminal domain 1 DKE52_015160 PF13090 Polyphosphate kinase C-terminal domain 2 DKE52_015160 PF13089 Polyphosphate kinase N-terminal domain DKE52_015185 PF13472 GDSL-like Lipase/Acylhydrolase family DKE52_015190 PF00484 Carbonic anhydrase DKE52_015225 PF03781 Sulfatase-modifying factor enzyme 1 DKE52_015270 PF00456 Transketolase, thiamine diphosphate binding domain DKE52_015325 PF01327 Polypeptide deformylase DKE52_015360 PF12697 Alpha/beta hydrolase family DKE52_015375 PF14759 Reductase C-terminal DKE52_015375 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE52_015390 PF00355 Rieske [2Fe-2S] domain DKE52_015400 PF00355 Rieske [2Fe-2S] domain DKE52_015430 PF00535 Glycosyl transferase family 2 DKE52_015445 PF07152 YaeQ protein DKE52_015450 PF00375 Sodium:dicarboxylate symporter family DKE52_015465 PF03061 Thioesterase superfamily DKE52_015490 PF00171 Aldehyde dehydrogenase family DKE52_015495 PF00732 GMC oxidoreductase DKE52_015495 PF05199 GMC oxidoreductase DKE52_015540 PF01126 Heme oxygenase DKE52_015570 PF08281 Sigma-70, region 4 DKE52_015570 PF04542 Sigma-70 region 2 DKE52_015640 PF00665 Integrase core domain DKE52_015640 PF13333 Integrase core domain DKE52_015640 PF13276 HTH-like domain DKE52_015865 PF07007 Lysozyme inhibitor LprI DKE52_015910 PF01695 IstB-like ATP binding protein DKE52_016085 PF13533 Biotin-lipoyl like DKE52_016100 PF01266 FAD dependent oxidoreductase DKE52_016125 PF12320 Type 5 capsule protein repressor C-terminal domain DKE52_016125 PF00149 Calcineurin-like phosphoesterase DKE52_016135 PF01168 Alanine racemase, N-terminal domain DKE52_016140 PF00437 Type II/IV secretion system protein DKE52_016145 PF00437 Type II/IV secretion system protein DKE52_016150 PF01475 Ferric uptake regulator family DKE52_016160 PF03658 RnfH family Ubiquitin DKE52_016175 PF01814 Hemerythrin HHE cation binding domain DKE52_016180 PF13230 Glutamine amidotransferases class-II DKE52_016200 PF00692 dUTPase DKE52_016210 PF00691 OmpA family DKE52_016210 PF13488 Glycine zipper DKE52_016230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE52_016235 PF03776 Septum formation topological specificity factor MinE DKE52_016255 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE52_016270 PF00583 Acetyltransferase (GNAT) family DKE52_016285 PF03143 Elongation factor Tu C-terminal domain DKE52_016285 PF00009 Elongation factor Tu GTP binding domain DKE52_016285 PF03144 Elongation factor Tu domain 2 DKE52_016300 PF00164 Ribosomal protein S12/S23 DKE52_016355 PF07859 alpha/beta hydrolase fold DKE52_016360 PF02028 BCCT, betaine/carnitine/choline family transporter DKE52_016370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_016370 PF03466 LysR substrate binding domain DKE52_016390 PF00037 4Fe-4S binding domain DKE52_016395 PF01467 Cytidylyltransferase-like DKE52_016400 PF01668 SmpB protein DKE52_016415 PF01479 S4 domain DKE52_016415 PF00849 RNA pseudouridylate synthase DKE52_016475 PF01386 Ribosomal L25p family DKE52_016480 PF01195 Peptidyl-tRNA hydrolase DKE52_016485 PF02261 Aspartate decarboxylase DKE52_016500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DKE52_016520 PF00550 Phosphopantetheine attachment site DKE52_016530 PF00698 Acyl transferase domain DKE52_016535 PF01783 Ribosomal L32p protein family DKE52_016540 PF02620 Large ribosomal RNA subunit accumulation protein YceD DKE52_016545 PF04315 Elongation factor P hydroxylase DKE52_016550 PF01300 Telomere recombination DKE52_016555 PF02616 Segregation and condensation protein ScpA DKE52_016560 PF04079 Segregation and condensation complex subunit ScpB DKE52_016565 PF01479 S4 domain DKE52_016565 PF00849 RNA pseudouridylate synthase DKE52_016645 PF03309 Type III pantothenate kinase DKE52_016815 PF00361 Proton-conducting membrane transporter DKE52_016820 PF00361 Proton-conducting membrane transporter DKE52_016830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE52_016835 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE52_016845 PF00146 NADH dehydrogenase DKE52_016855 PF10531 SLBB domain DKE52_016855 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKE52_016855 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKE52_016870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE52_016875 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DKE52_016880 PF00990 Diguanylate cyclase, GGDEF domain DKE52_016890 PF00672 HAMP domain DKE52_016890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE52_016890 PF00512 His Kinase A (phospho-acceptor) domain DKE52_016910 PF00268 Ribonucleotide reductase, small chain DKE52_016965 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DKE52_017015 PF13276 HTH-like domain DKE52_017015 PF00665 Integrase core domain DKE52_017015 PF13333 Integrase core domain DKE52_017035 PF01613 Flavin reductase like domain DKE52_017065 PF01970 Tripartite tricarboxylate transporter TctA family DKE52_017120 PF00440 Bacterial regulatory proteins, tetR family DKE52_017120 PF17932 Tetracyclin repressor-like, C-terminal domain DKE52_017200 PF00893 Small Multidrug Resistance protein DKE52_017230 PF00834 Ribulose-phosphate 3 epimerase family DKE52_017240 PF00756 Putative esterase DKE52_017275 PF00293 NUDIX domain DKE52_017325 PF00815 Histidinol dehydrogenase DKE52_017330 PF01634 ATP phosphoribosyltransferase DKE52_017345 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DKE52_017395 PF00795 Carbon-nitrogen hydrolase DKE52_017405 PF01047 MarR family DKE52_017410 PF02566 OsmC-like protein DKE52_017445 PF02325 YGGT family DKE52_017450 PF03807 NADP oxidoreductase coenzyme F420-dependent DKE52_017450 PF14748 Pyrroline-5-carboxylate reductase dimerisation DKE52_017470 PF00085 Thioredoxin DKE52_017490 PF00216 Bacterial DNA-binding protein DKE52_017515 PF01632 Ribosomal protein L35 DKE52_017535 PF00043 Glutathione S-transferase, C-terminal domain DKE52_017535 PF02798 Glutathione S-transferase, N-terminal domain DKE52_017555 PF00501 AMP-binding enzyme DKE52_017555 PF13193 AMP-binding enzyme C-terminal domain DKE52_017565 PF00381 PTS HPr component phosphorylation site DKE52_017575 PF02569 Pantoate-beta-alanine ligase DKE52_017615 PF05958 tRNA (Uracil-5-)-methyltransferase DKE52_017665 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE52_017690 PF01207 Dihydrouridine synthase (Dus) DKE52_017770 PF10369 Small subunit of acetolactate synthase DKE52_017805 PF02321 Outer membrane efflux protein DKE52_017835 PF00462 Glutaredoxin DKE52_017840 PF02556 Preprotein translocase subunit SecB DKE52_017855 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE52_017855 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE52_017900 PF00221 Aromatic amino acid lyase DKE52_017925 PF00550 Phosphopantetheine attachment site DKE52_017950 PF01011 PQQ enzyme repeat DKE52_017950 PF13360 PQQ-like domain DKE52_017970 PF13464 Domain of unknown function (DUF4115) DKE52_017985 PF00334 Nucleoside diphosphate kinase DKE52_017990 PF04384 Iron-sulphur cluster assembly DKE52_018030 PF00171 Aldehyde dehydrogenase family DKE52_018035 PF01202 Shikimate kinase DKE52_018040 PF02447 GntP family permease DKE52_018045 PF01081 KDPG and KHG aldolase DKE52_018050 PF00920 Dehydratase family DKE52_018060 PF00871 Acetokinase family DKE52_018070 PF05683 Fumarase C-terminus DKE52_018070 PF05681 Fumarate hydratase (Fumerase) DKE52_018120 PF07021 Methionine biosynthesis protein MetW DKE52_018120 PF00561 alpha/beta hydrolase fold DKE52_018130 PF01725 Ham1 family DKE52_018145 PF02416 mttA/Hcf106 family DKE52_018170 PF01790 Prolipoprotein diacylglyceryl transferase DKE52_018200 PF01625 Peptide methionine sulfoxide reductase DKE52_018210 PF01618 MotA/TolQ/ExbB proton channel family DKE52_018235 PF00830 Ribosomal L28 family DKE52_018265 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DKE52_018300 PF08240 Alcohol dehydrogenase GroES-like domain DKE52_018300 PF00107 Zinc-binding dehydrogenase DKE52_018305 PF04102 SlyX DKE52_018360 PF01416 tRNA pseudouridine synthase DKE52_018370 PF01176 Translation initiation factor 1A / IF-1 DKE52_018400 PF00330 Aconitase family (aconitate hydratase) DKE52_018410 PF03466 LysR substrate binding domain DKE52_018410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_018430 PF00293 NUDIX domain DKE52_018445 PF12706 Beta-lactamase superfamily domain DKE52_018460 PF02798 Glutathione S-transferase, N-terminal domain DKE52_018465 PF13280 WYL domain DKE52_018465 PF08279 HTH domain DKE52_018545 PF01197 Ribosomal protein L31 DKE52_018560 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DKE52_018580 PF03884 DNA gyrase inhibitor YacG DKE52_018585 PF00753 Metallo-beta-lactamase superfamily DKE52_018600 PF01177 Asp/Glu/Hydantoin racemase DKE52_018620 PF01206 Sulfurtransferase TusA DKE52_018625 PF03471 Transporter associated domain DKE52_018625 PF00571 CBS domain DKE52_018630 PF00795 Carbon-nitrogen hydrolase DKE52_018685 PF01544 CorA-like Mg2+ transporter protein DKE52_018695 PF00312 Ribosomal protein S15 DKE52_018735 PF01209 ubiE/COQ5 methyltransferase family DKE52_018755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE52_018785 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE52_018800 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE52_018810 PF02033 Ribosome-binding factor A DKE52_018825 PF17384 RimP C-terminal SH3 domain DKE52_018825 PF02576 RimP N-terminal domain DKE52_018850 PF00121 Triosephosphate isomerase DKE52_018860 PF00482 Type II secretion system (T2SS), protein F DKE52_018880 PF00588 SpoU rRNA Methylase family DKE52_018880 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE52_018885 PF06865 Pyrimidine/purine nucleoside phosphorylase DKE52_018945 PF01066 CDP-alcohol phosphatidyltransferase DKE52_018990 PF02803 Thiolase, C-terminal domain DKE52_018990 PF00108 Thiolase, N-terminal domain DKE52_019050 PF03553 Na+/H+ antiporter family DKE52_019050 PF13726 Na+-H+ antiporter family DKE52_019085 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE52_019085 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE52_019100 PF03946 Ribosomal protein L11, N-terminal domain DKE52_019100 PF00298 Ribosomal protein L11, RNA binding domain DKE52_019105 PF00467 KOW motif DKE52_019105 PF02357 Transcription termination factor nusG DKE52_019110 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DKE52_019150 PF13419 Haloacid dehalogenase-like hydrolase DKE52_019160 PF00263 Bacterial type II and III secretion system protein DKE52_019160 PF03958 Bacterial type II/III secretion system short domain DKE52_019175 PF00816 H-NS histone family DKE52_019200 PF03900 Porphobilinogen deaminase, C-terminal domain DKE52_019200 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKE52_019215 PF14698 Argininosuccinate lyase C-terminal DKE52_019215 PF00206 Lyase DKE52_019225 PF01895 PhoU domain DKE52_019240 PF00892 EamA-like transporter family DKE52_019260 PF00293 NUDIX domain DKE52_019265 PF00149 Calcineurin-like phosphoesterase DKE52_019270 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE52_019280 PF01098 Cell cycle protein DKE52_019305 PF00589 Phage integrase family DKE52_019305 PF02899 Phage integrase, N-terminal SAM-like domain DKE52_019310 PF10411 Disulfide bond isomerase protein N-terminus DKE52_019310 PF13098 Thioredoxin-like domain DKE52_019315 PF03447 Homoserine dehydrogenase, NAD binding domain DKE52_019315 PF01842 ACT domain DKE52_019315 PF00742 Homoserine dehydrogenase DKE52_019320 PF00291 Pyridoxal-phosphate dependent enzyme DKE52_019325 PF00768 D-alanyl-D-alanine carboxypeptidase DKE52_019330 PF00196 Bacterial regulatory proteins, luxR family DKE52_019330 PF00072 Response regulator receiver domain DKE52_019400 PF03477 ATP cone domain DKE52_019425 PF03358 NADPH-dependent FMN reductase DKE52_019440 PF00701 Dihydrodipicolinate synthetase family DKE52_019455 PF03573 outer membrane porin, OprD family DKE52_019490 PF03458 UPF0126 domain DKE52_019515 PF07690 Major Facilitator Superfamily DKE52_019565 PF03358 NADPH-dependent FMN reductase DKE52_019635 PF01327 Polypeptide deformylase DKE52_019655 PF00892 EamA-like transporter family DKE52_019660 PF00440 Bacterial regulatory proteins, tetR family DKE52_019685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE52_019690 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE52_019690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE52_019695 PF00231 ATP synthase DKE52_019705 PF00213 ATP synthase delta (OSCP) subunit DKE52_019710 PF00430 ATP synthase B/B' CF(0) DKE52_019715 PF00137 ATP synthase subunit C DKE52_019745 PF00950 ABC 3 transport family DKE52_019800 PF03551 Transcriptional regulator PadR-like family DKE52_019810 PF04286 Protein of unknown function (DUF445) DKE52_019845 PF01722 BolA-like protein DKE52_019890 PF16197 Ketoacyl-synthetase C-terminal extension DKE52_019890 PF00550 Phosphopantetheine attachment site DKE52_019890 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE52_019890 PF00975 Thioesterase domain DKE52_019890 PF14765 Polyketide synthase dehydratase DKE52_019890 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE52_019890 PF08242 Methyltransferase domain DKE52_019920 PF07690 Major Facilitator Superfamily DKE52_019920 PF00083 Sugar (and other) transporter DKE52_019925 PF00378 Enoyl-CoA hydratase/isomerase DKE52_019945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE52_019945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE52_019960 PF00324 Amino acid permease DKE52_019970 PF01042 Endoribonuclease L-PSP DKE52_019980 PF01266 FAD dependent oxidoreductase DKE52_020065 PF00293 NUDIX domain DKE52_020105 PF00285 Citrate synthase, C-terminal domain DKE52_020115 PF07729 FCD domain DKE52_020115 PF00392 Bacterial regulatory proteins, gntR family DKE52_020125 PF00155 Aminotransferase class I and II DKE52_020140 PF07729 FCD domain DKE52_020140 PF00392 Bacterial regulatory proteins, gntR family DKE52_020145 PF02652 L-lactate permease DKE52_020175 PF02397 Bacterial sugar transferase DKE52_020200 PF01370 NAD dependent epimerase/dehydratase family DKE52_020225 PF07922 Glycosyltransferase family 52 DKE52_020255 PF02350 UDP-N-acetylglucosamine 2-epimerase DKE52_020260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKE52_020275 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DKE52_020275 PF02563 Polysaccharide biosynthesis/export protein DKE52_020275 PF10531 SLBB domain DKE52_020280 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE52_020315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DKE52_020315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DKE52_020330 PF03725 3' exoribonuclease family, domain 2 DKE52_020330 PF01138 3' exoribonuclease family, domain 1 DKE52_020340 PF00175 Oxidoreductase NAD-binding domain DKE52_020345 PF00440 Bacterial regulatory proteins, tetR family DKE52_020365 PF13419 Haloacid dehalogenase-like hydrolase DKE52_020370 PF00106 short chain dehydrogenase DKE52_020400 PF00296 Luciferase-like monooxygenase DKE52_020405 PF00528 Binding-protein-dependent transport system inner membrane component DKE52_020420 PF01048 Phosphorylase superfamily DKE52_020490 PF07859 alpha/beta hydrolase fold DKE52_020540 PF13406 Transglycosylase SLT domain DKE52_020615 PF00156 Phosphoribosyl transferase domain DKE52_020630 PF16916 Dimerisation domain of Zinc Transporter DKE52_020630 PF01545 Cation efflux family DKE52_020650 PF01809 Putative membrane protein insertion efficiency factor DKE52_020660 PF00468 Ribosomal protein L34 DKE52_020690 PF07690 Major Facilitator Superfamily DKE52_020700 PF03466 LysR substrate binding domain DKE52_020700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE52_020745 PF00171 Aldehyde dehydrogenase family DKE52_020790 PF07804 HipA-like C-terminal domain DKE52_020790 PF13657 HipA N-terminal domain DKE52_020870 PF00756 Putative esterase DKE52_020880 PF02583 Metal-sensitive transcriptional repressor DKE52_020970 PF13673 Acetyltransferase (GNAT) domain DKE52_021000 PF01202 Shikimate kinase DKE52_021155 PF13614 AAA domain DKE52_021190 PF01545 Cation efflux family DKE52_021315 PF01850 PIN domain DKE52_021325 PF13302 Acetyltransferase (GNAT) domain DKE52_021385 PF13302 Acetyltransferase (GNAT) domain DKE52_021435 PF02796 Helix-turn-helix domain of resolvase DKE52_021435 PF00239 Resolvase, N terminal domain