locus-tag class description DKE46_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain DKE46_000010 PF02767 DNA polymerase III beta subunit, central domain DKE46_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain DKE46_000055 PF01521 Iron-sulphur cluster biosynthesis DKE46_000065 PF03702 Anhydro-N-acetylmuramic acid kinase DKE46_000070 PF00579 tRNA synthetases class I (W and Y) DKE46_000130 PF02911 Formyl transferase, C-terminal domain DKE46_000130 PF00551 Formyl transferase DKE46_000135 PF00920 Dehydratase family DKE46_000155 PF00860 Permease family DKE46_000195 PF05173 Dihydrodipicolinate reductase, C-terminus DKE46_000195 PF01113 Dihydrodipicolinate reductase, N-terminus DKE46_000205 PF07690 Major Facilitator Superfamily DKE46_000210 PF00248 Aldo/keto reductase family DKE46_000270 PF07043 Protein of unknown function (DUF1328) DKE46_000275 PF03692 Putative zinc- or iron-chelating domain DKE46_000300 PF01259 SAICAR synthetase DKE46_000310 PF00701 Dihydrodipicolinate synthetase family DKE46_000330 PF04463 Protein of unknown function (DUF523) DKE46_000360 PF00324 Amino acid permease DKE46_000390 PF05962 HutD DKE46_000475 PF01029 NusB family DKE46_000485 PF00925 GTP cyclohydrolase II DKE46_000485 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DKE46_000515 PF02580 D-Tyr-tRNA(Tyr) deacylase DKE46_000520 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKE46_000520 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE46_000525 PF00581 Rhodanese-like domain DKE46_000605 PF02600 Disulfide bond formation protein DsbB DKE46_000660 PF03561 Allantoicase repeat DKE46_000675 PF00860 Permease family DKE46_000680 PF00576 HIUase/Transthyretin family DKE46_000715 PF00990 Diguanylate cyclase, GGDEF domain DKE46_000715 PF07694 5TMR of 5TMR-LYT DKE46_000735 PF03372 Endonuclease/Exonuclease/phosphatase family DKE46_000740 PF00156 Phosphoribosyl transferase domain DKE46_000760 PF04101 Glycosyltransferase family 28 C-terminal domain DKE46_000760 PF03033 Glycosyltransferase family 28 N-terminal domain DKE46_000765 PF01225 Mur ligase family, catalytic domain DKE46_000765 PF08245 Mur ligase middle domain DKE46_000765 PF02875 Mur ligase family, glutamate ligase domain DKE46_000775 PF03799 Cell division protein FtsQ DKE46_000775 PF08478 POTRA domain, FtsQ-type DKE46_000790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DKE46_000800 PF01551 Peptidase family M23 DKE46_000830 PF00258 Flavodoxin DKE46_000830 PF01613 Flavin reductase like domain DKE46_000845 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKE46_000845 PF01243 Pyridoxamine 5'-phosphate oxidase DKE46_000870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE46_000880 PF04452 RNA methyltransferase DKE46_000905 PF01037 Lrp/AsnC ligand binding domain DKE46_000910 PF00296 Luciferase-like monooxygenase DKE46_000915 PF03358 NADPH-dependent FMN reductase DKE46_000920 PF00196 Bacterial regulatory proteins, luxR family DKE46_000920 PF00072 Response regulator receiver domain DKE46_000935 PF04341 Protein of unknown function, DUF485 DKE46_000975 PF00440 Bacterial regulatory proteins, tetR family DKE46_000975 PF16925 Tetracyclin repressor-like, C-terminal domain DKE46_000980 PF00107 Zinc-binding dehydrogenase DKE46_000980 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_000990 PF06942 GlpM protein DKE46_001005 PF03070 TENA/THI-4/PQQC family DKE46_001005 PF02581 Thiamine monophosphate synthase DKE46_001005 PF08543 Phosphomethylpyrimidine kinase DKE46_001015 PF07690 Major Facilitator Superfamily DKE46_001020 PF00436 Single-strand binding protein family DKE46_001100 PF13186 Iron-sulfur cluster-binding domain DKE46_001100 PF04055 Radical SAM superfamily DKE46_001130 PF00324 Amino acid permease DKE46_001145 PF00171 Aldehyde dehydrogenase family DKE46_001155 PF00857 Isochorismatase family DKE46_001160 PF05726 Pirin C-terminal cupin domain DKE46_001160 PF02678 Pirin DKE46_001265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_001265 PF03466 LysR substrate binding domain DKE46_001290 PF12833 Helix-turn-helix domain DKE46_001290 PF02311 AraC-like ligand binding domain DKE46_001370 PF13936 Helix-turn-helix domain DKE46_001370 PF00665 Integrase core domain DKE46_001430 PF07690 Major Facilitator Superfamily DKE46_001525 PF13356 Arm DNA-binding domain DKE46_001525 PF00589 Phage integrase family DKE46_001535 PF02705 K+ potassium transporter DKE46_001585 PF00977 Histidine biosynthesis protein DKE46_001590 PF01636 Phosphotransferase enzyme family DKE46_001605 PF00892 EamA-like transporter family DKE46_001630 PF00117 Glutamine amidotransferase class-I DKE46_001655 PF00583 Acetyltransferase (GNAT) family DKE46_001660 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DKE46_001660 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DKE46_001690 PF00106 short chain dehydrogenase DKE46_001800 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE46_001815 PF01795 MraW methylase family DKE46_001835 PF01225 Mur ligase family, catalytic domain DKE46_001835 PF02875 Mur ligase family, glutamate ligase domain DKE46_001835 PF08245 Mur ligase middle domain DKE46_001915 PF04011 LemA family DKE46_001930 PF00114 Pilin (bacterial filament) DKE46_001930 PF07963 Prokaryotic N-terminal methylation motif DKE46_001945 PF00210 Ferritin-like domain DKE46_001950 PF04324 BFD-like [2Fe-2S] binding domain DKE46_001960 PF01042 Endoribonuclease L-PSP DKE46_001975 PF01192 RNA polymerase Rpb6 DKE46_001980 PF00625 Guanylate kinase DKE46_001985 PF02401 LytB protein DKE46_002030 PF01782 RimM N-terminal domain DKE46_002030 PF05239 PRC-barrel domain DKE46_002045 PF00561 alpha/beta hydrolase fold DKE46_002050 PF03280 Proteobacterial lipase chaperone protein DKE46_002070 PF00892 EamA-like transporter family DKE46_002085 PF01565 FAD binding domain DKE46_002085 PF02913 FAD linked oxidases, C-terminal domain DKE46_002095 PF03992 Antibiotic biosynthesis monooxygenase DKE46_002150 PF08241 Methyltransferase domain DKE46_002165 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKE46_002165 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKE46_002170 PF00202 Aminotransferase class-III DKE46_002180 PF00171 Aldehyde dehydrogenase family DKE46_002240 PF05746 DALR anticodon binding domain DKE46_002240 PF02092 Glycyl-tRNA synthetase beta subunit DKE46_002245 PF02091 Glycyl-tRNA synthetase alpha subunit DKE46_002275 PF04024 PspC domain DKE46_002285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE46_002285 PF02770 Acyl-CoA dehydrogenase, middle domain DKE46_002285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_002285 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKE46_002305 PF00925 GTP cyclohydrolase II DKE46_002315 PF00459 Inositol monophosphatase family DKE46_002345 PF05494 MlaC protein DKE46_002360 PF03641 Possible lysine decarboxylase DKE46_002365 PF00293 NUDIX domain DKE46_002415 PF02082 Transcriptional regulator DKE46_002420 PF00970 Oxidoreductase FAD-binding domain DKE46_002420 PF00042 Globin DKE46_002420 PF00175 Oxidoreductase NAD-binding domain DKE46_002435 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE46_002445 PF00338 Ribosomal protein S10p/S20e DKE46_002450 PF00297 Ribosomal protein L3 DKE46_002455 PF00573 Ribosomal protein L4/L1 family DKE46_002460 PF00276 Ribosomal protein L23 DKE46_002465 PF00181 Ribosomal Proteins L2, RNA binding domain DKE46_002465 PF03947 Ribosomal Proteins L2, C-terminal domain DKE46_002470 PF00203 Ribosomal protein S19 DKE46_002475 PF00237 Ribosomal protein L22p/L17e DKE46_002480 PF07650 KH domain DKE46_002480 PF00189 Ribosomal protein S3, C-terminal domain DKE46_002485 PF00252 Ribosomal protein L16p/L10e DKE46_002490 PF00831 Ribosomal L29 protein DKE46_002515 PF00253 Ribosomal protein S14p/S29e DKE46_002520 PF00410 Ribosomal protein S8 DKE46_002525 PF00347 Ribosomal protein L6 DKE46_002530 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE46_002535 PF03719 Ribosomal protein S5, C-terminal domain DKE46_002535 PF00333 Ribosomal protein S5, N-terminal domain DKE46_002540 PF00327 Ribosomal protein L30p/L7e DKE46_002545 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE46_002550 PF00344 SecY translocase DKE46_002555 PF00444 Ribosomal protein L36 DKE46_002560 PF00416 Ribosomal protein S13/S18 DKE46_002575 PF01000 RNA polymerase Rpb3/RpoA insert domain DKE46_002575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DKE46_002575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DKE46_002590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_002590 PF02770 Acyl-CoA dehydrogenase, middle domain DKE46_002590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE46_002595 PF03937 Flavinator of succinate dehydrogenase DKE46_002685 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE46_002690 PF03631 Virulence factor BrkB DKE46_002720 PF02130 Uncharacterized protein family UPF0054 DKE46_002735 PF01551 Peptidase family M23 DKE46_002735 PF10145 Phage-related minor tail protein DKE46_002735 PF01464 Transglycosylase SLT domain DKE46_002745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE46_002745 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE46_002765 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DKE46_002770 PF01066 CDP-alcohol phosphatidyltransferase DKE46_002820 PF00440 Bacterial regulatory proteins, tetR family DKE46_002820 PF17932 Tetracyclin repressor-like, C-terminal domain DKE46_002880 PF04386 Stringent starvation protein B DKE46_002885 PF00043 Glutathione S-transferase, C-terminal domain DKE46_002885 PF02798 Glutathione S-transferase, N-terminal domain DKE46_002890 PF00380 Ribosomal protein S9/S16 DKE46_002900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKE46_002945 PF00149 Calcineurin-like phosphoesterase DKE46_002945 PF10518 TAT (twin-arginine translocation) pathway signal sequence DKE46_002960 PF13689 YfiR/HmsC-like DKE46_003000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE46_003000 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_003010 PF00753 Metallo-beta-lactamase superfamily DKE46_003010 PF04273 Putative phosphatase (DUF442) DKE46_003020 PF00085 Thioredoxin DKE46_003025 PF03061 Thioesterase superfamily DKE46_003065 PF04279 Intracellular septation protein A DKE46_003085 PF02441 Flavoprotein DKE46_003085 PF04127 DNA / pantothenate metabolism flavoprotein DKE46_003090 PF07549 SecD/SecF GG Motif DKE46_003090 PF02355 Protein export membrane protein DKE46_003100 PF02699 Preprotein translocase subunit DKE46_003105 PF01702 Queuine tRNA-ribosyltransferase DKE46_003160 PF01522 Polysaccharide deacetylase DKE46_003190 PF02938 GAD domain DKE46_003190 PF00152 tRNA synthetases class II (D, K and N) DKE46_003190 PF01336 OB-fold nucleic acid binding domain DKE46_003220 PF06146 Phosphate-starvation-inducible E DKE46_003225 PF02798 Glutathione S-transferase, N-terminal domain DKE46_003225 PF00043 Glutathione S-transferase, C-terminal domain DKE46_003230 PF03466 LysR substrate binding domain DKE46_003230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_003235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE46_003235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_003235 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKE46_003235 PF02770 Acyl-CoA dehydrogenase, middle domain DKE46_003285 PF01923 Cobalamin adenosyltransferase DKE46_003300 PF00291 Pyridoxal-phosphate dependent enzyme DKE46_003330 PF00290 Tryptophan synthase alpha chain DKE46_003335 PF01039 Carboxyl transferase domain DKE46_003375 PF00083 Sugar (and other) transporter DKE46_003375 PF07690 Major Facilitator Superfamily DKE46_003380 PF03006 Haemolysin-III related DKE46_003390 PF13673 Acetyltransferase (GNAT) domain DKE46_003405 PF00378 Enoyl-CoA hydratase/isomerase DKE46_003405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKE46_003405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKE46_003415 PF12833 Helix-turn-helix domain DKE46_003415 PF02311 AraC-like ligand binding domain DKE46_003420 PF02515 CoA-transferase family III DKE46_003435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE46_003435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE46_003465 PF00691 OmpA family DKE46_003465 PF13505 Outer membrane protein beta-barrel domain DKE46_003485 PF00860 Permease family DKE46_003510 PF06827 Zinc finger found in FPG and IleRS DKE46_003510 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DKE46_003510 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DKE46_003515 PF02245 Methylpurine-DNA glycosylase (MPG) DKE46_003525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE46_003530 PF03547 Membrane transport protein DKE46_003540 PF10411 Disulfide bond isomerase protein N-terminus DKE46_003540 PF13098 Thioredoxin-like domain DKE46_003570 PF01613 Flavin reductase like domain DKE46_003575 PF01042 Endoribonuclease L-PSP DKE46_003580 PF00857 Isochorismatase family DKE46_003585 PF00296 Luciferase-like monooxygenase DKE46_003590 PF00881 Nitroreductase family DKE46_003595 PF12697 Alpha/beta hydrolase family DKE46_003600 PF04343 Protein of unknown function, DUF488 DKE46_003610 PF07411 Domain of unknown function (DUF1508) DKE46_003635 PF00072 Response regulator receiver domain DKE46_003640 PF00072 Response regulator receiver domain DKE46_003645 PF01584 CheW-like domain DKE46_003670 PF08085 Entericidin EcnA/B family DKE46_003680 PF04304 Protein of unknown function (DUF454) DKE46_003745 PF00881 Nitroreductase family DKE46_003775 PF00291 Pyridoxal-phosphate dependent enzyme DKE46_003775 PF13291 ACT domain DKE46_003820 PF02686 Glu-tRNAGln amidotransferase C subunit DKE46_003830 PF04085 rod shape-determining protein MreC DKE46_003835 PF04093 rod shape-determining protein MreD DKE46_003855 PF06974 Protein of unknown function (DUF1298) DKE46_003855 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DKE46_003900 PF06719 AraC-type transcriptional regulator N-terminus DKE46_003900 PF12833 Helix-turn-helix domain DKE46_003910 PF01965 DJ-1/PfpI family DKE46_003930 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DKE46_003935 PF00293 NUDIX domain DKE46_003935 PF09297 NADH pyrophosphatase zinc ribbon domain DKE46_003955 PF04237 YjbR DKE46_003980 PF01734 Patatin-like phospholipase DKE46_004030 PF00909 Ammonium Transporter Family DKE46_004035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_004035 PF03466 LysR substrate binding domain DKE46_004115 PF00348 Polyprenyl synthetase DKE46_004120 PF00829 Ribosomal prokaryotic L21 protein DKE46_004150 PF00588 SpoU rRNA Methylase family DKE46_004180 PF03358 NADPH-dependent FMN reductase DKE46_004205 PF04359 Protein of unknown function (DUF493) DKE46_004240 PF00285 Citrate synthase, C-terminal domain DKE46_004250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE46_004255 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE46_004260 PF00890 FAD binding domain DKE46_004260 PF02910 Fumarate reductase flavoprotein C-term DKE46_004265 PF13085 2Fe-2S iron-sulfur cluster binding domain DKE46_004285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE46_004285 PF00364 Biotin-requiring enzyme DKE46_004285 PF02817 e3 binding domain DKE46_004295 PF00549 CoA-ligase DKE46_004295 PF08442 ATP-grasp domain DKE46_004300 PF02629 CoA binding domain DKE46_004300 PF00549 CoA-ligase DKE46_004305 PF00579 tRNA synthetases class I (W and Y) DKE46_004315 PF04228 Putative neutral zinc metallopeptidase DKE46_004375 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE46_004385 PF00582 Universal stress protein family DKE46_004400 PF00440 Bacterial regulatory proteins, tetR family DKE46_004405 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE46_004405 PF03449 Transcription elongation factor, N-terminal DKE46_004410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE46_004410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DKE46_004410 PF02142 MGS-like domain DKE46_004415 PF00117 Glutamine amidotransferase class-I DKE46_004415 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKE46_004435 PF01985 CRS1 / YhbY (CRM) domain DKE46_004485 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DKE46_004485 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DKE46_004520 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DKE46_004520 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DKE46_004525 PF00781 Diacylglycerol kinase catalytic domain DKE46_004540 PF00166 Chaperonin 10 Kd subunit DKE46_004720 PF13438 Domain of unknown function (DUF4113) DKE46_004720 PF00817 impB/mucB/samB family DKE46_004720 PF11799 impB/mucB/samB family C-terminal domain DKE46_004720 PF11798 IMS family HHH motif DKE46_004750 PF03009 Glycerophosphoryl diester phosphodiesterase family DKE46_004765 PF01435 Peptidase family M48 DKE46_004770 PF01464 Transglycosylase SLT domain DKE46_004780 PF01171 PP-loop family DKE46_004790 PF01464 Transglycosylase SLT domain DKE46_004790 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE46_004870 PF00384 Molybdopterin oxidoreductase DKE46_004875 PF02634 FdhD/NarQ family DKE46_004880 PF06803 Protein of unknown function (DUF1232) DKE46_004925 PF01678 Diaminopimelate epimerase DKE46_004940 PF01012 Electron transfer flavoprotein domain DKE46_004975 PF00266 Aminotransferase class-V DKE46_004985 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE46_005000 PF00005 ABC transporter DKE46_005030 PF12697 Alpha/beta hydrolase family DKE46_005035 PF00551 Formyl transferase DKE46_005040 PF02769 AIR synthase related protein, C-terminal domain DKE46_005040 PF00586 AIR synthase related protein, N-terminal domain DKE46_005045 PF01594 AI-2E family transporter DKE46_005085 PF00588 SpoU rRNA Methylase family DKE46_005085 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE46_005100 PF00691 OmpA family DKE46_005105 PF04052 TolB amino-terminal domain DKE46_005105 PF07676 WD40-like Beta Propeller Repeat DKE46_005115 PF02472 Biopolymer transport protein ExbD/TolR DKE46_005125 PF03061 Thioesterase superfamily DKE46_005135 PF17864 RuvB AAA lid domain DKE46_005135 PF05491 RuvB C-terminal winged helix domain DKE46_005135 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKE46_005140 PF01330 RuvA N terminal domain DKE46_005140 PF07499 RuvA, C-terminal domain DKE46_005155 PF07690 Major Facilitator Superfamily DKE46_005170 PF01467 Cytidylyltransferase-like DKE46_005170 PF00293 NUDIX domain DKE46_005185 PF00578 AhpC/TSA family DKE46_005200 PF06508 Queuosine biosynthesis protein QueC DKE46_005225 PF00005 ABC transporter DKE46_005225 PF12857 TOBE-like domain DKE46_005235 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_005260 PF02223 Thymidylate kinase DKE46_005270 PF00890 FAD binding domain DKE46_005270 PF02910 Fumarate reductase flavoprotein C-term DKE46_005285 PF00679 Elongation factor G C-terminus DKE46_005285 PF06421 GTP-binding protein LepA C-terminus DKE46_005285 PF03144 Elongation factor Tu domain 2 DKE46_005285 PF00009 Elongation factor Tu GTP binding domain DKE46_005290 PF10502 Signal peptidase, peptidase S26 DKE46_005300 PF00035 Double-stranded RNA binding motif DKE46_005300 PF14622 Ribonuclease-III-like DKE46_005330 PF00106 short chain dehydrogenase DKE46_005380 PF02151 UvrB/uvrC motif DKE46_005380 PF04851 Type III restriction enzyme, res subunit DKE46_005380 PF00271 Helicase conserved C-terminal domain DKE46_005380 PF12344 Ultra-violet resistance protein B DKE46_005380 PF17757 UvrB interaction domain DKE46_005395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKE46_005395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKE46_005420 PF01018 GTP1/OBG DKE46_005420 PF01926 50S ribosome-binding GTPase DKE46_005425 PF00696 Amino acid kinase family DKE46_005425 PF01472 PUA domain DKE46_005435 PF07759 Protein of unknown function (DUF1615) DKE46_005445 PF03060 Nitronate monooxygenase DKE46_005460 PF02350 UDP-N-acetylglucosamine 2-epimerase DKE46_005490 PF00875 DNA photolyase DKE46_005490 PF03441 FAD binding domain of DNA photolyase DKE46_005495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE46_005505 PF00768 D-alanyl-D-alanine carboxypeptidase DKE46_005505 PF07943 Penicillin-binding protein 5, C-terminal domain DKE46_005525 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE46_005545 PF02567 Phenazine biosynthesis-like protein DKE46_005575 PF02581 Thiamine monophosphate synthase DKE46_005580 PF00202 Aminotransferase class-III DKE46_005590 PF00849 RNA pseudouridylate synthase DKE46_005615 PF00487 Fatty acid desaturase DKE46_005640 PF01037 Lrp/AsnC ligand binding domain DKE46_005655 PF12849 PBP superfamily domain DKE46_005660 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_005710 PF00132 Bacterial transferase hexapeptide (six repeats) DKE46_005730 PF01975 Survival protein SurE DKE46_005740 PF03466 LysR substrate binding domain DKE46_005740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_005755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE46_005760 PF13593 SBF-like CPA transporter family (DUF4137) DKE46_005765 PF01197 Ribosomal protein L31 DKE46_005785 PF08207 Elongation factor P (EF-P) KOW-like domain DKE46_005785 PF01132 Elongation factor P (EF-P) OB domain DKE46_005785 PF09285 Elongation factor P, C-terminal DKE46_005790 PF02554 Carbon starvation protein CstA DKE46_005790 PF13722 5TM C-terminal transporter carbon starvation CstA DKE46_005795 PF04328 Selenoprotein, putative DKE46_005930 PF02678 Pirin DKE46_005930 PF17954 Quercetinase C-terminal cupin domain DKE46_005960 PF00005 ABC transporter DKE46_005990 PF00857 Isochorismatase family DKE46_005990 PF00550 Phosphopantetheine attachment site DKE46_006010 PF00664 ABC transporter transmembrane region DKE46_006010 PF00005 ABC transporter DKE46_006015 PF00975 Thioesterase domain DKE46_006100 PF00218 Indole-3-glycerol phosphate synthase DKE46_006105 PF02885 Glycosyl transferase family, helical bundle domain DKE46_006105 PF00591 Glycosyl transferase family, a/b domain DKE46_006150 PF01040 UbiA prenyltransferase family DKE46_006185 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE46_006185 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE46_006190 PF01784 NIF3 (NGG1p interacting factor 3) DKE46_006195 PF13180 PDZ domain DKE46_006200 PF01743 Poly A polymerase head domain DKE46_006200 PF12627 Probable RNA and SrmB- binding site of polymerase A DKE46_006220 PF02219 Methylenetetrahydrofolate reductase DKE46_006245 PF04055 Radical SAM superfamily DKE46_006250 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_006250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE46_006270 PF00557 Metallopeptidase family M24 DKE46_006275 PF00318 Ribosomal protein S2 DKE46_006280 PF00889 Elongation factor TS DKE46_006315 PF13406 Transglycosylase SLT domain DKE46_006385 PF13533 Biotin-lipoyl like DKE46_006390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_006390 PF03466 LysR substrate binding domain DKE46_006400 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_006405 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_006415 PF00893 Small Multidrug Resistance protein DKE46_006420 PF00037 4Fe-4S binding domain DKE46_006435 PF02567 Phenazine biosynthesis-like protein DKE46_006445 PF18389 TrmO C-terminal domain DKE46_006445 PF01980 tRNA-methyltransferase O DKE46_006480 PF00293 NUDIX domain DKE46_006490 PF14814 Bifunctional transglycosylase second domain DKE46_006490 PF00905 Penicillin binding protein transpeptidase domain DKE46_006490 PF00912 Transglycosylase DKE46_006495 PF01513 ATP-NAD kinase DKE46_006500 PF07023 Protein of unknown function (DUF1315) DKE46_006505 PF00591 Glycosyl transferase family, a/b domain DKE46_006505 PF02885 Glycosyl transferase family, helical bundle domain DKE46_006515 PF00375 Sodium:dicarboxylate symporter family DKE46_006545 PF03781 Sulfatase-modifying factor enzyme 1 DKE46_006610 PF05690 Thiazole biosynthesis protein ThiG DKE46_006625 PF04542 Sigma-70 region 2 DKE46_006625 PF00140 Sigma-70 factor, region 1.2 DKE46_006625 PF04545 Sigma-70, region 4 DKE46_006635 PF00313 'Cold-shock' DNA-binding domain DKE46_006640 PF00270 DEAD/DEAH box helicase DKE46_006640 PF00271 Helicase conserved C-terminal domain DKE46_006650 PF00881 Nitroreductase family DKE46_006655 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKE46_006655 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKE46_006680 PF02674 Colicin V production protein DKE46_006710 PF09424 Yqey-like protein DKE46_006715 PF01165 Ribosomal protein S21 DKE46_006740 PF00069 Protein kinase domain DKE46_006740 PF03793 PASTA domain DKE46_006850 PF00440 Bacterial regulatory proteins, tetR family DKE46_006890 PF00576 HIUase/Transthyretin family DKE46_006905 PF00512 His Kinase A (phospho-acceptor) domain DKE46_006905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE46_006905 PF00672 HAMP domain DKE46_006985 PF07995 Glucose / Sorbosone dehydrogenase DKE46_007015 PF00753 Metallo-beta-lactamase superfamily DKE46_007015 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKE46_007020 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_007045 PF02954 Bacterial regulatory protein, Fis family DKE46_007085 PF01841 Transglutaminase-like superfamily DKE46_007085 PF08379 Bacterial transglutaminase-like N-terminal region DKE46_007095 PF01168 Alanine racemase, N-terminal domain DKE46_007095 PF00842 Alanine racemase, C-terminal domain DKE46_007105 PF03948 Ribosomal protein L9, C-terminal domain DKE46_007105 PF01281 Ribosomal protein L9, N-terminal domain DKE46_007110 PF01084 Ribosomal protein S18 DKE46_007115 PF01250 Ribosomal protein S6 DKE46_007125 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKE46_007135 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKE46_007155 PF03618 Kinase/pyrophosphorylase DKE46_007175 PF13994 PgaD-like protein DKE46_007200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_007200 PF03466 LysR substrate binding domain DKE46_007210 PF03462 PCRF domain DKE46_007210 PF00472 RF-1 domain DKE46_007220 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_007235 PF00106 short chain dehydrogenase DKE46_007245 PF01613 Flavin reductase like domain DKE46_007250 PF00899 ThiF family DKE46_007255 PF03109 ABC1 family DKE46_007260 PF02152 Dihydroneopterin aldolase DKE46_007280 PF02669 K+-transporting ATPase, c chain DKE46_007290 PF00486 Transcriptional regulatory protein, C terminal DKE46_007290 PF00072 Response regulator receiver domain DKE46_007400 PF04284 Protein of unknown function (DUF441) DKE46_007410 PF01479 S4 domain DKE46_007410 PF00849 RNA pseudouridylate synthase DKE46_007430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DKE46_007445 PF17209 Hfq protein DKE46_007475 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE46_007475 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DKE46_007505 PF00171 Aldehyde dehydrogenase family DKE46_007535 PF02110 Hydroxyethylthiazole kinase family DKE46_007620 PF07715 TonB-dependent Receptor Plug Domain DKE46_007620 PF07660 Secretin and TonB N terminus short domain DKE46_007620 PF00593 TonB dependent receptor DKE46_007695 PF01638 HxlR-like helix-turn-helix DKE46_007730 PF03466 LysR substrate binding domain DKE46_007730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_007745 PF13936 Helix-turn-helix domain DKE46_007745 PF00665 Integrase core domain DKE46_007765 PF04151 Bacterial pre-peptidase C-terminal domain DKE46_007795 PF03594 Benzoate membrane transport protein DKE46_007800 PF01037 Lrp/AsnC ligand binding domain DKE46_007900 PF00857 Isochorismatase family DKE46_007950 PF01645 Conserved region in glutamate synthase DKE46_007965 PF00577 Outer membrane usher protein DKE46_007965 PF13954 PapC N-terminal domain DKE46_007965 PF13953 PapC C-terminal domain DKE46_007990 PF02785 Biotin carboxylase C-terminal domain DKE46_007990 PF00289 Biotin carboxylase, N-terminal domain DKE46_007990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE46_007995 PF00364 Biotin-requiring enzyme DKE46_008000 PF01220 Dehydroquinase class II DKE46_008015 PF03328 HpcH/HpaI aldolase/citrate lyase family DKE46_008035 PF02423 Ornithine cyclodeaminase/mu-crystallin family DKE46_008070 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_008070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKE46_008070 PF18267 Rubredoxin NAD+ reductase C-terminal domain DKE46_008070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKE46_008070 PF04324 BFD-like [2Fe-2S] binding domain DKE46_008095 PF04055 Radical SAM superfamily DKE46_008095 PF06463 Molybdenum Cofactor Synthesis C DKE46_008105 PF02391 MoaE protein DKE46_008110 PF00994 Probable molybdopterin binding domain DKE46_008110 PF01967 MoaC family DKE46_008120 PF01638 HxlR-like helix-turn-helix DKE46_008125 PF00155 Aminotransferase class I and II DKE46_008125 PF00392 Bacterial regulatory proteins, gntR family DKE46_008150 PF02635 DsrE/DsrF-like family DKE46_008155 PF16363 GDP-mannose 4,6 dehydratase DKE46_008175 PF00561 alpha/beta hydrolase fold DKE46_008205 PF02542 YgbB family DKE46_008230 PF00989 PAS fold DKE46_008230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE46_008230 PF00512 His Kinase A (phospho-acceptor) domain DKE46_008240 PF00919 Uncharacterized protein family UPF0004 DKE46_008240 PF18693 TRAM domain DKE46_008240 PF04055 Radical SAM superfamily DKE46_008265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DKE46_008265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DKE46_008265 PF13288 DXP reductoisomerase C-terminal domain DKE46_008290 PF07977 FabA-like domain DKE46_008295 PF00132 Bacterial transferase hexapeptide (six repeats) DKE46_008295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DKE46_008320 PF01479 S4 domain DKE46_008325 PF13419 Haloacid dehalogenase-like hydrolase DKE46_008340 PF01037 Lrp/AsnC ligand binding domain DKE46_008445 PF03928 Haem-degrading DKE46_008450 PF05525 Branched-chain amino acid transport protein DKE46_008480 PF00462 Glutaredoxin DKE46_008485 PF00202 Aminotransferase class-III DKE46_008540 PF08173 Membrane bound YbgT-like protein DKE46_008545 PF02322 Cytochrome bd terminal oxidase subunit II DKE46_008590 PF02080 TrkA-C domain DKE46_008590 PF02254 TrkA-N domain DKE46_008615 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKE46_008615 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKE46_008625 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKE46_008640 PF00793 DAHP synthetase I family DKE46_008690 PF00793 DAHP synthetase I family DKE46_008695 PF03952 Enolase, N-terminal domain DKE46_008695 PF00113 Enolase, C-terminal TIM barrel domain DKE46_008715 PF04977 Septum formation initiator DKE46_008720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DKE46_008725 PF01144 Coenzyme A transferase DKE46_008735 PF02803 Thiolase, C-terminal domain DKE46_008735 PF00108 Thiolase, N-terminal domain DKE46_008740 PF00206 Lyase DKE46_008740 PF10397 Adenylosuccinate lyase C-terminus DKE46_008745 PF00561 alpha/beta hydrolase fold DKE46_008750 PF07690 Major Facilitator Superfamily DKE46_008755 PF02627 Carboxymuconolactone decarboxylase family DKE46_008765 PF00775 Dioxygenase DKE46_008795 PF04143 Sulphur transport DKE46_008810 PF09339 IclR helix-turn-helix domain DKE46_008810 PF01614 Bacterial transcriptional regulator DKE46_008835 PF00106 short chain dehydrogenase DKE46_008905 PF01179 Copper amine oxidase, enzyme domain DKE46_008905 PF07833 Copper amine oxidase N-terminal domain DKE46_008905 PF02728 Copper amine oxidase, N3 domain DKE46_008905 PF02727 Copper amine oxidase, N2 domain DKE46_008925 PF00108 Thiolase, N-terminal domain DKE46_008925 PF02803 Thiolase, C-terminal domain DKE46_008945 PF00775 Dioxygenase DKE46_008945 PF04444 Catechol dioxygenase N terminus DKE46_008950 PF02426 Muconolactone delta-isomerase DKE46_008955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKE46_008955 PF13378 Enolase C-terminal domain-like DKE46_008970 PF00392 Bacterial regulatory proteins, gntR family DKE46_008970 PF07729 FCD domain DKE46_008995 PF00576 HIUase/Transthyretin family DKE46_009015 PF00392 Bacterial regulatory proteins, gntR family DKE46_009015 PF07729 FCD domain DKE46_009055 PF00561 alpha/beta hydrolase fold DKE46_009080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_009100 PF00440 Bacterial regulatory proteins, tetR family DKE46_009100 PF08359 YsiA-like protein, C-terminal region DKE46_009120 PF00106 short chain dehydrogenase DKE46_009140 PF13193 AMP-binding enzyme C-terminal domain DKE46_009140 PF00501 AMP-binding enzyme DKE46_009165 PF00881 Nitroreductase family DKE46_009235 PF00324 Amino acid permease DKE46_009270 PF00005 ABC transporter DKE46_009280 PF14572 Phosphoribosyl synthetase-associated domain DKE46_009280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE46_009305 PF13533 Biotin-lipoyl like DKE46_009345 PF02824 TGS domain DKE46_009345 PF13291 ACT domain DKE46_009345 PF04607 Region found in RelA / SpoT proteins DKE46_009360 PF09905 DNA-binding protein VF530 DKE46_009375 PF16970 Type-1 fimbrial protein, A DKE46_009400 PF00107 Zinc-binding dehydrogenase DKE46_009400 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_009410 PF00199 Catalase DKE46_009445 PF00486 Transcriptional regulatory protein, C terminal DKE46_009445 PF00072 Response regulator receiver domain DKE46_009450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE46_009450 PF00529 HlyD membrane-fusion protein of T1SS DKE46_009480 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE46_009490 PF12706 Beta-lactamase superfamily domain DKE46_009495 PF08042 PqqA family DKE46_009515 PF00106 short chain dehydrogenase DKE46_009525 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_009535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_009535 PF03459 TOBE domain DKE46_009550 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE46_009550 PF00175 Oxidoreductase NAD-binding domain DKE46_009550 PF00970 Oxidoreductase FAD-binding domain DKE46_009555 PF12833 Helix-turn-helix domain DKE46_009555 PF14525 AraC-binding-like domain DKE46_009565 PF01613 Flavin reductase like domain DKE46_009580 PF01738 Dienelactone hydrolase family DKE46_009595 PF06719 AraC-type transcriptional regulator N-terminus DKE46_009595 PF12833 Helix-turn-helix domain DKE46_009650 PF01144 Coenzyme A transferase DKE46_009655 PF01144 Coenzyme A transferase DKE46_009665 PF02803 Thiolase, C-terminal domain DKE46_009665 PF00108 Thiolase, N-terminal domain DKE46_009670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_009670 PF03466 LysR substrate binding domain DKE46_009690 PF10415 Fumarase C C-terminus DKE46_009690 PF00206 Lyase DKE46_009700 PF00083 Sugar (and other) transporter DKE46_009720 PF12833 Helix-turn-helix domain DKE46_009720 PF06445 GyrI-like small molecule binding domain DKE46_009745 PF01925 Sulfite exporter TauE/SafE DKE46_009755 PF00753 Metallo-beta-lactamase superfamily DKE46_009785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE46_009785 PF00364 Biotin-requiring enzyme DKE46_009785 PF02817 e3 binding domain DKE46_009790 PF02779 Transketolase, pyrimidine binding domain DKE46_009790 PF02780 Transketolase, C-terminal domain DKE46_009795 PF00676 Dehydrogenase E1 component DKE46_009800 PF04055 Radical SAM superfamily DKE46_009845 PF00291 Pyridoxal-phosphate dependent enzyme DKE46_009865 PF05166 YcgL domain DKE46_009890 PF02525 Flavodoxin-like fold DKE46_009905 PF02132 RecR protein DKE46_009905 PF13662 Toprim domain DKE46_009925 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE46_009970 PF02684 Lipid-A-disaccharide synthetase DKE46_010000 PF01925 Sulfite exporter TauE/SafE DKE46_010005 PF00793 DAHP synthetase I family DKE46_010025 PF02277 Phosphoribosyltransferase DKE46_010075 PF02770 Acyl-CoA dehydrogenase, middle domain DKE46_010075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_010075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE46_010085 PF12833 Helix-turn-helix domain DKE46_010085 PF12852 Cupin DKE46_010095 PF00216 Bacterial DNA-binding protein DKE46_010110 PF02082 Transcriptional regulator DKE46_010115 PF00266 Aminotransferase class-V DKE46_010130 PF00226 DnaJ domain DKE46_010130 PF07743 HSCB C-terminal oligomerisation domain DKE46_010140 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE46_010215 PF12911 N-terminal TM domain of oligopeptide transport permease C DKE46_010215 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_010255 PF01618 MotA/TolQ/ExbB proton channel family DKE46_010260 PF02472 Biopolymer transport protein ExbD/TolR DKE46_010315 PF00575 S1 RNA binding domain DKE46_010320 PF02224 Cytidylate kinase DKE46_010355 PF07963 Prokaryotic N-terminal methylation motif DKE46_010355 PF11612 Type II secretion system (T2SS), protein J DKE46_010360 PF07963 Prokaryotic N-terminal methylation motif DKE46_010360 PF02501 Type II secretion system (T2SS), protein I DKE46_010395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DKE46_010400 PF00005 ABC transporter DKE46_010400 PF00664 ABC transporter transmembrane region DKE46_010420 PF13614 AAA domain DKE46_010445 PF00639 PPIC-type PPIASE domain DKE46_010445 PF09312 SurA N-terminal domain DKE46_010450 PF01116 Fructose-bisphosphate aldolase class-II DKE46_010490 PF00375 Sodium:dicarboxylate symporter family DKE46_010520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE46_010520 PF12833 Helix-turn-helix domain DKE46_010525 PF01597 Glycine cleavage H-protein DKE46_010535 PF00474 Sodium:solute symporter family DKE46_010550 PF04229 GrpB protein DKE46_010590 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKE46_010590 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKE46_010590 PF02772 S-adenosylmethionine synthetase, central domain DKE46_010625 PF02075 Crossover junction endodeoxyribonuclease RuvC DKE46_010630 PF01256 Carbohydrate kinase DKE46_010630 PF03853 YjeF-related protein N-terminus DKE46_010635 PF08331 Domain of unknown function (DUF1730) DKE46_010640 PF06968 Biotin and Thiamin Synthesis associated domain DKE46_010640 PF04055 Radical SAM superfamily DKE46_010660 PF16970 Type-1 fimbrial protein, A DKE46_010685 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE46_010685 PF12833 Helix-turn-helix domain DKE46_010695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_010695 PF03466 LysR substrate binding domain DKE46_010760 PF01037 Lrp/AsnC ligand binding domain DKE46_010770 PF00005 ABC transporter DKE46_010775 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_010780 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_010810 PF03180 NLPA lipoprotein DKE46_010815 PF03180 NLPA lipoprotein DKE46_010820 PF00005 ABC transporter DKE46_010820 PF09383 NIL domain DKE46_010830 PF06071 Protein of unknown function (DUF933) DKE46_010830 PF01926 50S ribosome-binding GTPase DKE46_010855 PF03591 AzlC protein DKE46_010860 PF05437 Branched-chain amino acid transport protein (AzlD) DKE46_010880 PF00155 Aminotransferase class I and II DKE46_010900 PF01641 SelR domain DKE46_010910 PF00375 Sodium:dicarboxylate symporter family DKE46_010915 PF00710 Asparaginase, N-terminal DKE46_010915 PF17763 Glutaminase/Asparaginase C-terminal domain DKE46_010925 PF00588 SpoU rRNA Methylase family DKE46_010930 PF00132 Bacterial transferase hexapeptide (six repeats) DKE46_010945 PF13192 Thioredoxin domain DKE46_010945 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_010965 PF03358 NADPH-dependent FMN reductase DKE46_010980 PF01022 Bacterial regulatory protein, arsR family DKE46_011070 PF01654 Cytochrome bd terminal oxidase subunit I DKE46_011075 PF02322 Cytochrome bd terminal oxidase subunit II DKE46_011120 PF01039 Carboxyl transferase domain DKE46_011150 PF00155 Aminotransferase class I and II DKE46_011150 PF00392 Bacterial regulatory proteins, gntR family DKE46_011165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_011165 PF03466 LysR substrate binding domain DKE46_011175 PF02798 Glutathione S-transferase, N-terminal domain DKE46_011205 PF00581 Rhodanese-like domain DKE46_011235 PF03466 LysR substrate binding domain DKE46_011235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_011260 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_011265 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_011300 PF13404 AsnC-type helix-turn-helix domain DKE46_011300 PF01037 Lrp/AsnC ligand binding domain DKE46_011310 PF00717 Peptidase S24-like DKE46_011415 PF02785 Biotin carboxylase C-terminal domain DKE46_011415 PF00289 Biotin carboxylase, N-terminal domain DKE46_011415 PF00364 Biotin-requiring enzyme DKE46_011415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE46_011460 PF01144 Coenzyme A transferase DKE46_011465 PF01144 Coenzyme A transferase DKE46_011470 PF07690 Major Facilitator Superfamily DKE46_011520 PF09339 IclR helix-turn-helix domain DKE46_011525 PF02515 CoA-transferase family III DKE46_011535 PF07690 Major Facilitator Superfamily DKE46_011545 PF00266 Aminotransferase class-V DKE46_011580 PF01494 FAD binding domain DKE46_011585 PF01614 Bacterial transcriptional regulator DKE46_011585 PF09339 IclR helix-turn-helix domain DKE46_011590 PF02525 Flavodoxin-like fold DKE46_011635 PF03061 Thioesterase superfamily DKE46_011645 PF07848 PaaX-like protein DKE46_011645 PF08223 PaaX-like protein C-terminal domain DKE46_011665 PF00378 Enoyl-CoA hydratase/isomerase DKE46_011670 PF00378 Enoyl-CoA hydratase/isomerase DKE46_011680 PF01883 Iron-sulfur cluster assembly protein DKE46_011685 PF05138 Phenylacetic acid catabolic protein DKE46_011690 PF06243 Phenylacetic acid degradation B DKE46_011695 PF05138 Phenylacetic acid catabolic protein DKE46_011725 PF09278 MerR, DNA binding DKE46_011725 PF00376 MerR family regulatory protein DKE46_011735 PF02677 Epoxyqueuosine reductase QueH DKE46_011760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE46_011770 PF03466 LysR substrate binding domain DKE46_011770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_011805 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_011805 PF13823 Alcohol dehydrogenase GroES-associated DKE46_011805 PF00107 Zinc-binding dehydrogenase DKE46_011810 PF13823 Alcohol dehydrogenase GroES-associated DKE46_011810 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_011810 PF00107 Zinc-binding dehydrogenase DKE46_011820 PF00892 EamA-like transporter family DKE46_011890 PF02785 Biotin carboxylase C-terminal domain DKE46_011890 PF00364 Biotin-requiring enzyme DKE46_011890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE46_011890 PF00289 Biotin carboxylase, N-terminal domain DKE46_011900 PF07286 Protein of unknown function (DUF1445) DKE46_011905 PF03746 LamB/YcsF family DKE46_011925 PF04542 Sigma-70 region 2 DKE46_011925 PF08281 Sigma-70, region 4 DKE46_012000 PF05368 NmrA-like family DKE46_012095 PF01292 Prokaryotic cytochrome b561 DKE46_012105 PF01638 HxlR-like helix-turn-helix DKE46_012125 PF00892 EamA-like transporter family DKE46_012135 PF13520 Amino acid permease DKE46_012150 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE46_012150 PF12833 Helix-turn-helix domain DKE46_012170 PF00037 4Fe-4S binding domain DKE46_012170 PF11953 Domain of unknown function (DUF3470) DKE46_012210 PF02321 Outer membrane efflux protein DKE46_012220 PF03968 OstA-like protein DKE46_012235 PF00571 CBS domain DKE46_012235 PF01380 SIS domain DKE46_012240 PF01406 tRNA synthetases class I (C) catalytic domain DKE46_012240 PF09190 DALR domain DKE46_012275 PF01638 HxlR-like helix-turn-helix DKE46_012290 PF00924 Mechanosensitive ion channel DKE46_012355 PF08241 Methyltransferase domain DKE46_012360 PF01037 Lrp/AsnC ligand binding domain DKE46_012380 PF00313 'Cold-shock' DNA-binding domain DKE46_012390 PF01810 LysE type translocator DKE46_012465 PF09278 MerR, DNA binding DKE46_012465 PF00376 MerR family regulatory protein DKE46_012490 PF06099 Phenol hydroxylase subunit DKE46_012495 PF02332 Methane/Phenol/Toluene Hydroxylase DKE46_012500 PF02406 MmoB/DmpM family DKE46_012515 PF00175 Oxidoreductase NAD-binding domain DKE46_012515 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE46_012515 PF00970 Oxidoreductase FAD-binding domain DKE46_012535 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKE46_012535 PF00355 Rieske [2Fe-2S] domain DKE46_012540 PF00866 Ring hydroxylating beta subunit DKE46_012545 PF00175 Oxidoreductase NAD-binding domain DKE46_012545 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE46_012545 PF00970 Oxidoreductase FAD-binding domain DKE46_012550 PF00106 short chain dehydrogenase DKE46_012580 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE46_012580 PF00578 AhpC/TSA family DKE46_012600 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_012600 PF13192 Thioredoxin domain DKE46_012610 PF00043 Glutathione S-transferase, C-terminal domain DKE46_012610 PF02798 Glutathione S-transferase, N-terminal domain DKE46_012620 PF02390 Putative methyltransferase DKE46_012625 PF00043 Glutathione S-transferase, C-terminal domain DKE46_012625 PF13417 Glutathione S-transferase, N-terminal domain DKE46_012685 PF02566 OsmC-like protein DKE46_012725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKE46_012725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKE46_012735 PF00589 Phage integrase family DKE46_012735 PF13356 Arm DNA-binding domain DKE46_012740 PF00717 Peptidase S24-like DKE46_012755 PF13340 Putative transposase of IS4/5 family (DUF4096) DKE46_012795 PF01555 DNA methylase DKE46_012800 PF01555 DNA methylase DKE46_012850 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DKE46_013000 PF02599 Global regulator protein family DKE46_013005 PF01351 Ribonuclease HII DKE46_013035 PF17954 Quercetinase C-terminal cupin domain DKE46_013035 PF02678 Pirin DKE46_013040 PF17932 Tetracyclin repressor-like, C-terminal domain DKE46_013040 PF00440 Bacterial regulatory proteins, tetR family DKE46_013050 PF00106 short chain dehydrogenase DKE46_013100 PF07859 alpha/beta hydrolase fold DKE46_013115 PF03573 outer membrane porin, OprD family DKE46_013140 PF00355 Rieske [2Fe-2S] domain DKE46_013240 PF00701 Dihydrodipicolinate synthetase family DKE46_013245 PF13378 Enolase C-terminal domain-like DKE46_013260 PF00892 EamA-like transporter family DKE46_013310 PF07729 FCD domain DKE46_013310 PF00392 Bacterial regulatory proteins, gntR family DKE46_013350 PF03783 Curli production assembly/transport component CsgG DKE46_013365 PF00665 Integrase core domain DKE46_013365 PF13333 Integrase core domain DKE46_013365 PF13276 HTH-like domain DKE46_013430 PF01979 Amidohydrolase family DKE46_013435 PF00929 Exonuclease DKE46_013470 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_013495 PF00293 NUDIX domain DKE46_013495 PF09297 NADH pyrophosphatase zinc ribbon domain DKE46_013505 PF04972 BON domain DKE46_013510 PF02021 Uncharacterised protein family UPF0102 DKE46_013540 PF13411 MerR HTH family regulatory protein DKE46_013610 PF02590 Predicted SPOUT methyltransferase DKE46_013615 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKE46_013630 PF04060 Putative Fe-S cluster DKE46_013635 PF10576 Iron-sulfur binding domain of endonuclease III DKE46_013635 PF00633 Helix-hairpin-helix motif DKE46_013635 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE46_013645 PF05191 Adenylate kinase, active site lid DKE46_013680 PF01730 UreF DKE46_013685 PF02814 UreE urease accessory protein, N-terminal domain DKE46_013685 PF05194 UreE urease accessory protein, C-terminal domain DKE46_013695 PF00699 Urease beta subunit DKE46_013700 PF00547 Urease, gamma subunit DKE46_013705 PF01774 UreD urease accessory protein DKE46_013715 PF17185 NlpE C-terminal OB domain DKE46_013715 PF04170 NlpE N-terminal domain DKE46_013750 PF00009 Elongation factor Tu GTP binding domain DKE46_013770 PF00152 tRNA synthetases class II (D, K and N) DKE46_013770 PF01336 OB-fold nucleic acid binding domain DKE46_013785 PF00301 Rubredoxin DKE46_013800 PF03466 LysR substrate binding domain DKE46_013800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_013815 PF13089 Polyphosphate kinase N-terminal domain DKE46_013815 PF17941 Polyphosphate kinase C-terminal domain 1 DKE46_013815 PF13090 Polyphosphate kinase C-terminal domain 2 DKE46_013815 PF02503 Polyphosphate kinase middle domain DKE46_013820 PF00912 Transglycosylase DKE46_013840 PF13472 GDSL-like Lipase/Acylhydrolase family DKE46_013845 PF00484 Carbonic anhydrase DKE46_013850 PF00561 alpha/beta hydrolase fold DKE46_013865 PF01106 NifU-like domain DKE46_013865 PF01521 Iron-sulphur cluster biosynthesis DKE46_013900 PF01384 Phosphate transporter family DKE46_013925 PF07690 Major Facilitator Superfamily DKE46_013955 PF07690 Major Facilitator Superfamily DKE46_013960 PF12833 Helix-turn-helix domain DKE46_013960 PF07883 Cupin domain DKE46_013965 PF04960 Glutaminase DKE46_013970 PF01327 Polypeptide deformylase DKE46_013990 PF00171 Aldehyde dehydrogenase family DKE46_014005 PF12697 Alpha/beta hydrolase family DKE46_014015 PF07690 Major Facilitator Superfamily DKE46_014025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE46_014035 PF00355 Rieske [2Fe-2S] domain DKE46_014045 PF00355 Rieske [2Fe-2S] domain DKE46_014070 PF00378 Enoyl-CoA hydratase/isomerase DKE46_014080 PF00535 Glycosyl transferase family 2 DKE46_014095 PF07152 YaeQ protein DKE46_014100 PF00375 Sodium:dicarboxylate symporter family DKE46_014115 PF03061 Thioesterase superfamily DKE46_014135 PF00440 Bacterial regulatory proteins, tetR family DKE46_014135 PF13977 BetI-type transcriptional repressor, C-terminal DKE46_014310 PF07690 Major Facilitator Superfamily DKE46_014315 PF13533 Biotin-lipoyl like DKE46_014320 PF03061 Thioesterase superfamily DKE46_014325 PF00490 Delta-aminolevulinic acid dehydratase DKE46_014375 PF01168 Alanine racemase, N-terminal domain DKE46_014385 PF00437 Type II/IV secretion system protein DKE46_014390 PF01475 Ferric uptake regulator family DKE46_014415 PF01814 Hemerythrin HHE cation binding domain DKE46_014420 PF13230 Glutamine amidotransferases class-II DKE46_014430 PF00696 Amino acid kinase family DKE46_014440 PF00692 dUTPase DKE46_014450 PF13488 Glycine zipper DKE46_014450 PF00691 OmpA family DKE46_014470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE46_014475 PF03776 Septum formation topological specificity factor MinE DKE46_014495 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_014510 PF00583 Acetyltransferase (GNAT) family DKE46_014525 PF03144 Elongation factor Tu domain 2 DKE46_014525 PF03143 Elongation factor Tu C-terminal domain DKE46_014525 PF00009 Elongation factor Tu GTP binding domain DKE46_014530 PF00679 Elongation factor G C-terminus DKE46_014530 PF03764 Elongation factor G, domain IV DKE46_014530 PF00009 Elongation factor Tu GTP binding domain DKE46_014530 PF03144 Elongation factor Tu domain 2 DKE46_014530 PF14492 Elongation Factor G, domain II DKE46_014605 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE46_014610 PF03466 LysR substrate binding domain DKE46_014610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_014630 PF00037 4Fe-4S binding domain DKE46_014635 PF01467 Cytidylyltransferase-like DKE46_014640 PF01668 SmpB protein DKE46_014645 PF03358 NADPH-dependent FMN reductase DKE46_014655 PF00849 RNA pseudouridylate synthase DKE46_014655 PF01479 S4 domain DKE46_014680 PF03550 Outer membrane lipoprotein LolB DKE46_014715 PF01386 Ribosomal L25p family DKE46_014720 PF01195 Peptidyl-tRNA hydrolase DKE46_014725 PF02261 Aspartate decarboxylase DKE46_014750 PF03070 TENA/THI-4/PQQC family DKE46_014750 PF02581 Thiamine monophosphate synthase DKE46_014750 PF08543 Phosphomethylpyrimidine kinase DKE46_014755 PF04972 BON domain DKE46_014755 PF01476 LysM domain DKE46_014760 PF00550 Phosphopantetheine attachment site DKE46_014775 PF01783 Ribosomal L32p protein family DKE46_014785 PF04315 Elongation factor P hydroxylase DKE46_014790 PF01300 Telomere recombination DKE46_014795 PF02616 Segregation and condensation protein ScpA DKE46_014800 PF04079 Segregation and condensation complex subunit ScpB DKE46_014820 PF00155 Aminotransferase class I and II DKE46_014840 PF00982 Glycosyltransferase family 20 DKE46_014845 PF07690 Major Facilitator Superfamily DKE46_014850 PF00210 Ferritin-like domain DKE46_014865 PF06470 SMC proteins Flexible Hinge Domain DKE46_014865 PF02463 RecF/RecN/SMC N terminal domain DKE46_014885 PF03309 Type III pantothenate kinase DKE46_014900 PF01207 Dihydrouridine synthase (Dus) DKE46_014935 PF00692 dUTPase DKE46_014995 PF13533 Biotin-lipoyl like DKE46_015020 PF05552 Conserved TM helix DKE46_015045 PF00313 'Cold-shock' DNA-binding domain DKE46_015060 PF00361 Proton-conducting membrane transporter DKE46_015065 PF00361 Proton-conducting membrane transporter DKE46_015065 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKE46_015075 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE46_015080 PF12838 4Fe-4S dicluster domain DKE46_015105 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKE46_015105 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKE46_015110 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE46_015115 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DKE46_015135 PF00486 Transcriptional regulatory protein, C terminal DKE46_015135 PF00072 Response regulator receiver domain DKE46_015150 PF00268 Ribonucleotide reductase, small chain DKE46_015210 PF00534 Glycosyl transferases group 1 DKE46_015210 PF09318 Glycosyl transferase 1 domain A DKE46_015235 PF02321 Outer membrane efflux protein DKE46_015245 PF17074 Darcynin, domain of unknown function DKE46_015255 PF17074 Darcynin, domain of unknown function DKE46_015285 PF01613 Flavin reductase like domain DKE46_015335 PF03466 LysR substrate binding domain DKE46_015335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_015345 PF07690 Major Facilitator Superfamily DKE46_015355 PF03466 LysR substrate binding domain DKE46_015355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_015425 PF02445 Quinolinate synthetase A protein DKE46_015440 PF00893 Small Multidrug Resistance protein DKE46_015470 PF00834 Ribulose-phosphate 3 epimerase family DKE46_015480 PF00756 Putative esterase DKE46_015490 PF04445 Putative SAM-dependent methyltransferase DKE46_015495 PF00814 Glycoprotease family DKE46_015500 PF00132 Bacterial transferase hexapeptide (six repeats) DKE46_015560 PF00815 Histidinol dehydrogenase DKE46_015565 PF01634 ATP phosphoribosyltransferase DKE46_015570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DKE46_015580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DKE46_015645 PF02566 OsmC-like protein DKE46_015650 PF00437 Type II/IV secretion system protein DKE46_015675 PF02325 YGGT family DKE46_015700 PF00085 Thioredoxin DKE46_015715 PF00216 Bacterial DNA-binding protein DKE46_015740 PF00453 Ribosomal protein L20 DKE46_015745 PF01632 Ribosomal protein L35 DKE46_015765 PF02798 Glutathione S-transferase, N-terminal domain DKE46_015765 PF00043 Glutathione S-transferase, C-terminal domain DKE46_015795 PF00381 PTS HPr component phosphorylation site DKE46_015810 PF02548 Ketopantoate hydroxymethyltransferase DKE46_015865 PF00378 Enoyl-CoA hydratase/isomerase DKE46_015870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE46_015870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE46_015890 PF02233 NAD(P) transhydrogenase beta subunit DKE46_015895 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE46_015955 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_015960 PF03358 NADPH-dependent FMN reductase DKE46_015965 PF01758 Sodium Bile acid symporter family DKE46_015975 PF01022 Bacterial regulatory protein, arsR family DKE46_015980 PF03960 ArsC family DKE46_016015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE46_016045 PF00072 Response regulator receiver domain DKE46_016045 PF00486 Transcriptional regulatory protein, C terminal DKE46_016125 PF00589 Phage integrase family DKE46_016130 PF01207 Dihydrouridine synthase (Dus) DKE46_016210 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKE46_016210 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKE46_016215 PF10369 Small subunit of acetolactate synthase DKE46_016220 PF00205 Thiamine pyrophosphate enzyme, central domain DKE46_016220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKE46_016220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKE46_016240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE46_016250 PF02321 Outer membrane efflux protein DKE46_016275 PF00929 Exonuclease DKE46_016290 PF00462 Glutaredoxin DKE46_016295 PF02556 Preprotein translocase subunit SecB DKE46_016325 PF04551 GcpE protein DKE46_016330 PF13464 Domain of unknown function (DUF4115) DKE46_016345 PF00334 Nucleoside diphosphate kinase DKE46_016350 PF04384 Iron-sulphur cluster assembly DKE46_016355 PF01569 PAP2 superfamily DKE46_016365 PF03572 Peptidase family S41 DKE46_016365 PF00595 PDZ domain DKE46_016365 PF11818 C-terminal domain of tail specific protease (DUF3340) DKE46_016365 PF17804 Tail specific protease N-terminal domain DKE46_016380 PF00561 alpha/beta hydrolase fold DKE46_016390 PF00171 Aldehyde dehydrogenase family DKE46_016395 PF01202 Shikimate kinase DKE46_016400 PF02447 GntP family permease DKE46_016420 PF00871 Acetokinase family DKE46_016430 PF05681 Fumarate hydratase (Fumerase) DKE46_016430 PF05683 Fumarase C-terminus DKE46_016475 PF00561 alpha/beta hydrolase fold DKE46_016480 PF00561 alpha/beta hydrolase fold DKE46_016480 PF07021 Methionine biosynthesis protein MetW DKE46_016490 PF01725 Ham1 family DKE46_016500 PF02416 mttA/Hcf106 family DKE46_016505 PF02416 mttA/Hcf106 family DKE46_016550 PF00186 Dihydrofolate reductase DKE46_016560 PF01625 Peptide methionine sulfoxide reductase DKE46_016570 PF01618 MotA/TolQ/ExbB proton channel family DKE46_016580 PF01842 ACT domain DKE46_016580 PF00551 Formyl transferase DKE46_016600 PF00830 Ribosomal L28 family DKE46_016635 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DKE46_016665 PF01638 HxlR-like helix-turn-helix DKE46_016670 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_016670 PF00107 Zinc-binding dehydrogenase DKE46_016675 PF04102 SlyX DKE46_016695 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE46_016735 PF01416 tRNA pseudouridine synthase DKE46_016745 PF01176 Translation initiation factor 1A / IF-1 DKE46_016805 PF00293 NUDIX domain DKE46_016825 PF03466 LysR substrate binding domain DKE46_016825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_016840 PF02798 Glutathione S-transferase, N-terminal domain DKE46_016850 PF13419 Haloacid dehalogenase-like hydrolase DKE46_016855 PF00849 RNA pseudouridylate synthase DKE46_016855 PF01479 S4 domain DKE46_016885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE46_016885 PF03466 LysR substrate binding domain DKE46_016910 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE46_016910 PF02770 Acyl-CoA dehydrogenase, middle domain DKE46_016910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_016915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE46_016915 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE46_016925 PF01197 Ribosomal protein L31 DKE46_016935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DKE46_016955 PF03884 DNA gyrase inhibitor YacG DKE46_016960 PF00753 Metallo-beta-lactamase superfamily DKE46_016965 PF00762 Ferrochelatase DKE46_016975 PF01177 Asp/Glu/Hydantoin racemase DKE46_016995 PF01206 Sulfurtransferase TusA DKE46_017000 PF03471 Transporter associated domain DKE46_017000 PF00571 CBS domain DKE46_017010 PF01588 Putative tRNA binding domain DKE46_017040 PF01430 Hsp33 protein DKE46_017060 PF01544 CorA-like Mg2+ transporter protein DKE46_017065 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DKE46_017065 PF01138 3' exoribonuclease family, domain 1 DKE46_017065 PF03725 3' exoribonuclease family, domain 2 DKE46_017065 PF00575 S1 RNA binding domain DKE46_017065 PF00013 KH domain DKE46_017070 PF00312 Ribosomal protein S15 DKE46_017080 PF13538 UvrD-like helicase C-terminal domain DKE46_017110 PF01209 ubiE/COQ5 methyltransferase family DKE46_017120 PF03109 ABC1 family DKE46_017175 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE46_017185 PF02033 Ribosome-binding factor A DKE46_017200 PF02576 RimP N-terminal domain DKE46_017200 PF17384 RimP C-terminal SH3 domain DKE46_017220 PF03840 Preprotein translocase SecG subunit DKE46_017225 PF00121 Triosephosphate isomerase DKE46_017255 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKE46_017255 PF00588 SpoU rRNA Methylase family DKE46_017285 PF13533 Biotin-lipoyl like DKE46_017315 PF02805 Metal binding domain of Ada DKE46_017315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE46_017315 PF12833 Helix-turn-helix domain DKE46_017315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE46_017320 PF01066 CDP-alcohol phosphatidyltransferase DKE46_017365 PF02803 Thiolase, C-terminal domain DKE46_017365 PF00108 Thiolase, N-terminal domain DKE46_017420 PF13726 Na+-H+ antiporter family DKE46_017420 PF03553 Na+/H+ antiporter family DKE46_017450 PF04565 RNA polymerase Rpb2, domain 3 DKE46_017450 PF04561 RNA polymerase Rpb2, domain 2 DKE46_017450 PF04563 RNA polymerase beta subunit DKE46_017450 PF00562 RNA polymerase Rpb2, domain 6 DKE46_017450 PF04560 RNA polymerase Rpb2, domain 7 DKE46_017450 PF10385 RNA polymerase beta subunit external 1 domain DKE46_017455 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE46_017455 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE46_017460 PF00466 Ribosomal protein L10 DKE46_017465 PF00687 Ribosomal protein L1p/L10e family DKE46_017470 PF00298 Ribosomal protein L11, RNA binding domain DKE46_017470 PF03946 Ribosomal protein L11, N-terminal domain DKE46_017475 PF02357 Transcription termination factor nusG DKE46_017475 PF00467 KOW motif DKE46_017480 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DKE46_017515 PF04715 Anthranilate synthase component I, N terminal region DKE46_017515 PF00425 chorismate binding enzyme DKE46_017520 PF13419 Haloacid dehalogenase-like hydrolase DKE46_017570 PF03900 Porphobilinogen deaminase, C-terminal domain DKE46_017570 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKE46_017590 PF04362 Bacterial Fe(2+) trafficking DKE46_017595 PF01895 PhoU domain DKE46_017610 PF00892 EamA-like transporter family DKE46_017635 PF00149 Calcineurin-like phosphoesterase DKE46_017640 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE46_017685 PF01842 ACT domain DKE46_017685 PF00742 Homoserine dehydrogenase DKE46_017685 PF03447 Homoserine dehydrogenase, NAD binding domain DKE46_017695 PF00768 D-alanyl-D-alanine carboxypeptidase DKE46_017700 PF00072 Response regulator receiver domain DKE46_017700 PF00196 Bacterial regulatory proteins, luxR family DKE46_017705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE46_017705 PF00512 His Kinase A (phospho-acceptor) domain DKE46_017735 PF00883 Cytosol aminopeptidase family, catalytic domain DKE46_017735 PF02789 Cytosol aminopeptidase family, N-terminal domain DKE46_017755 PF00677 Lumazine binding domain DKE46_017770 PF03477 ATP cone domain DKE46_017780 PF00543 Nitrogen regulatory protein P-II DKE46_017795 PF03358 NADPH-dependent FMN reductase DKE46_017810 PF00701 Dihydrodipicolinate synthetase family DKE46_017825 PF03573 outer membrane porin, OprD family DKE46_017860 PF03458 UPF0126 domain DKE46_017930 PF03358 NADPH-dependent FMN reductase DKE46_017945 PF00291 Pyridoxal-phosphate dependent enzyme DKE46_018000 PF01327 Polypeptide deformylase DKE46_018015 PF01300 Telomere recombination DKE46_018020 PF00892 EamA-like transporter family DKE46_018030 PF07690 Major Facilitator Superfamily DKE46_018050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE46_018055 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE46_018055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE46_018075 PF00430 ATP synthase B/B' CF(0) DKE46_018080 PF00137 ATP synthase subunit C DKE46_018085 PF00119 ATP synthase A chain DKE46_018105 PF00005 ABC transporter DKE46_018110 PF00950 ABC 3 transport family DKE46_018115 PF01810 LysE type translocator DKE46_018135 PF05746 DALR anticodon binding domain DKE46_018135 PF00750 tRNA synthetases class I (R) DKE46_018135 PF03485 Arginyl tRNA synthetase N terminal domain DKE46_018155 PF02678 Pirin DKE46_018155 PF05726 Pirin C-terminal cupin domain DKE46_018165 PF03551 Transcriptional regulator PadR-like family DKE46_018170 PF02540 NAD synthase DKE46_018170 PF00958 GMP synthase C terminal domain DKE46_018170 PF00117 Glutamine amidotransferase class-I DKE46_018180 PF07681 DoxX DKE46_018185 PF09335 SNARE associated Golgi protein DKE46_018210 PF01722 BolA-like protein DKE46_018255 PF14765 Polyketide synthase dehydratase DKE46_018255 PF00550 Phosphopantetheine attachment site DKE46_018255 PF08242 Methyltransferase domain DKE46_018255 PF00975 Thioesterase domain DKE46_018255 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE46_018255 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE46_018255 PF16197 Ketoacyl-synthetase C-terminal extension DKE46_018270 PF00196 Bacterial regulatory proteins, luxR family DKE46_018270 PF03472 Autoinducer binding domain DKE46_018280 PF00765 Autoinducer synthase DKE46_018300 PF00324 Amino acid permease DKE46_018305 PF00892 EamA-like transporter family DKE46_018315 PF00378 Enoyl-CoA hydratase/isomerase DKE46_018320 PF00378 Enoyl-CoA hydratase/isomerase DKE46_018335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE46_018335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE46_018365 PF00842 Alanine racemase, C-terminal domain DKE46_018365 PF01168 Alanine racemase, N-terminal domain DKE46_018400 PF00849 RNA pseudouridylate synthase DKE46_018425 PF00107 Zinc-binding dehydrogenase DKE46_018425 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_018435 PF00293 NUDIX domain DKE46_018470 PF07729 FCD domain DKE46_018470 PF00392 Bacterial regulatory proteins, gntR family DKE46_018480 PF00155 Aminotransferase class I and II DKE46_018490 PF01070 FMN-dependent dehydrogenase DKE46_018495 PF00392 Bacterial regulatory proteins, gntR family DKE46_018495 PF07729 FCD domain DKE46_018500 PF02652 L-lactate permease DKE46_018510 PF00342 Phosphoglucose isomerase DKE46_018525 PF02397 Bacterial sugar transferase DKE46_018535 PF00535 Glycosyl transferase family 2 DKE46_018550 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DKE46_018560 PF04321 RmlD substrate binding domain DKE46_018565 PF16363 GDP-mannose 4,6 dehydratase DKE46_018580 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DKE46_018580 PF00535 Glycosyl transferase family 2 DKE46_018590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DKE46_018590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DKE46_018590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DKE46_018610 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DKE46_018610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE46_018625 PF01510 N-acetylmuramoyl-L-alanine amidase DKE46_018630 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DKE46_018630 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DKE46_018645 PF03725 3' exoribonuclease family, domain 2 DKE46_018645 PF01138 3' exoribonuclease family, domain 1 DKE46_018655 PF00175 Oxidoreductase NAD-binding domain DKE46_018670 PF01323 DSBA-like thioredoxin domain DKE46_018680 PF13419 Haloacid dehalogenase-like hydrolase DKE46_018685 PF00106 short chain dehydrogenase DKE46_018715 PF00296 Luciferase-like monooxygenase DKE46_018720 PF00528 Binding-protein-dependent transport system inner membrane component DKE46_018755 PF01252 Signal peptidase (SPase) II DKE46_018760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE46_018800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE46_018855 PF13406 Transglycosylase SLT domain DKE46_018860 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DKE46_018860 PF02222 ATP-grasp domain DKE46_018875 PF02875 Mur ligase family, glutamate ligase domain DKE46_018875 PF08245 Mur ligase middle domain DKE46_018875 PF01225 Mur ligase family, catalytic domain DKE46_018890 PF03741 Integral membrane protein TerC family DKE46_018915 PF00156 Phosphoribosyl transferase domain DKE46_018935 PF02583 Metal-sensitive transcriptional repressor DKE46_018950 PF01809 Putative membrane protein insertion efficiency factor DKE46_018960 PF00468 Ribosomal protein L34 DKE46_019090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE46_019110 PF00462 Glutaredoxin DKE46_019115 PF00175 Oxidoreductase NAD-binding domain DKE46_019115 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE46_019115 PF00970 Oxidoreductase FAD-binding domain DKE46_019145 PF00107 Zinc-binding dehydrogenase DKE46_019145 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_019160 PF02798 Glutathione S-transferase, N-terminal domain DKE46_019160 PF00043 Glutathione S-transferase, C-terminal domain DKE46_019165 PF01625 Peptide methionine sulfoxide reductase DKE46_019175 PF01695 IstB-like ATP binding protein DKE46_019190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE46_019190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE46_019195 PF13737 Transposase DDE domain DKE46_019220 PF00717 Peptidase S24-like DKE46_019325 PF01636 Phosphotransferase enzyme family DKE46_019330 PF13936 Helix-turn-helix domain DKE46_019330 PF00665 Integrase core domain DKE46_019495 PF18339 RapA N-terminal Tudor like domain 1 DKE46_019495 PF00176 SNF2 family N-terminal domain DKE46_019495 PF18337 RapA N-terminal Tudor like domain DKE46_019495 PF12137 RNA polymerase recycling family C-terminal DKE46_019495 PF00271 Helicase conserved C-terminal domain DKE46_019545 PF00565 Staphylococcal nuclease homologue DKE46_019610 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_019610 PF00107 Zinc-binding dehydrogenase DKE46_019740 PF08239 Bacterial SH3 domain DKE46_019740 PF01520 N-acetylmuramoyl-L-alanine amidase DKE46_019765 PF02522 Aminoglycoside 3-N-acetyltransferase DKE46_019825 PF00072 Response regulator receiver domain DKE46_019825 PF00486 Transcriptional regulatory protein, C terminal DKE46_019860 PF02796 Helix-turn-helix domain of resolvase DKE46_019860 PF00239 Resolvase, N terminal domain DKE46_019865 PF13610 DDE domain DKE46_019885 PF00809 Pterin binding enzyme DKE46_019905 PF13610 DDE domain DKE46_019970 PF01636 Phosphotransferase enzyme family DKE46_019975 PF13610 DDE domain DKE46_019995 PF13610 DDE domain DKE46_020095 PF13333 Integrase core domain DKE46_020095 PF13276 HTH-like domain DKE46_020095 PF00665 Integrase core domain DKE46_020355 PF13614 AAA domain DKE46_020425 PF13614 AAA domain DKE46_020460 PF00107 Zinc-binding dehydrogenase DKE46_020460 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_020560 PF02583 Metal-sensitive transcriptional repressor DKE46_020575 PF00557 Metallopeptidase family M24 DKE46_020575 PF01321 Creatinase/Prolidase N-terminal domain DKE46_020595 PF08659 KR domain DKE46_020595 PF14765 Polyketide synthase dehydratase DKE46_020595 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE46_020595 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE46_020595 PF16197 Ketoacyl-synthetase C-terminal extension DKE46_020595 PF08240 Alcohol dehydrogenase GroES-like domain DKE46_020595 PF00550 Phosphopantetheine attachment site DKE46_020595 PF00698 Acyl transferase domain DKE46_021040 PF02796 Helix-turn-helix domain of resolvase DKE46_021040 PF00239 Resolvase, N terminal domain