locus-tag	class	description
LPS07_00010	COG0592	DNA-directed DNA polymerase activity
LPS07_00020	COG0187	DNA topoisomerase II activity
LPS07_00035	COG0488	(ABC) transporter
LPS07_00060	COG0596	Alpha beta hydrolase
LPS07_00065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LPS07_00070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LPS07_00100	COG0625	glutathione transferase activity
LPS07_00110	COG0733	neurotransmitter:sodium symporter activity
LPS07_00150	COG2233	PERMEase
LPS07_00165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_00200	COG2814	Major facilitator Superfamily
LPS07_00205	COG0656	L-ascorbic acid biosynthetic process
LPS07_00210	COG0583	DNA-binding transcription factor activity
LPS07_00225	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_00230	COG1064	alcohol dehydrogenase
LPS07_00235	COG2818	Glycosylase
LPS07_00250	COG1194	a g-specific adenine glycosylase
LPS07_00265	COG5487	UPF0391 membrane protein
LPS07_00270	COG2983	Belongs to the UPF0260 family
LPS07_00275	COG2133	pyrroloquinoline quinone binding
LPS07_00280	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LPS07_00285	COG2116	formate transmembrane transporter activity
LPS07_00305	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LPS07_00310	COG1335	isochorismatase
LPS07_00315	COG0385	Bile acid
LPS07_00320	COG0534	Mate efflux family protein
LPS07_00325	COG1683	Conserved Protein
LPS07_00340	COG0346	lactoylglutathione lyase activity
LPS07_00345	COG0625	glutathione transferase activity
LPS07_00355	COG1113	amino acid transport
LPS07_00365	COG0523	cobalamin synthesis protein
LPS07_00375	COG2188	Transcriptional regulator
LPS07_00405	COG0010	Belongs to the arginase family
LPS07_00415	COG0546	phosphoglycolate phosphatase activity
LPS07_00425	COG1280	lysine exporter protein (LysE YggA)
LPS07_00440	COG1196	nuclear chromosome segregation
LPS07_00450	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LPS07_00455	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LPS07_00465	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LPS07_00470	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LPS07_00565	COG0534	Mate efflux family protein
LPS07_00570	COG0436	Aminotransferase
LPS07_00575	COG2733	membrane
LPS07_00590	COG2918	glutathione biosynthetic process
LPS07_00605	COG3179	chitinase
LPS07_00620	COG3150	esterase
LPS07_00630	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LPS07_00640	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_00650	COG2233	PERMEase
LPS07_00655	COG2351	hydroxyisourate hydrolase activity
LPS07_00690	COG3706	GGDEF domain
LPS07_00705	COG1393	Belongs to the ArsC family
LPS07_00710	COG0708	Exodeoxyribonuclease III
LPS07_00735	COG0189	ligase activity
LPS07_00755	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LPS07_00765	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LPS07_00780	COG4942	peptidase
LPS07_00790	COG0508	dehydrogenase complex catalyzes the overall conversion of
LPS07_00800	COG2119	membrane
LPS07_00805	COG4774	siderophore transport
LPS07_00810	COG0426	domain, Protein
LPS07_00810	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_00835	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LPS07_00855	COG1902	pentaerythritol trinitrate reductase activity
LPS07_00860	COG1519	Transferase
LPS07_00865	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LPS07_00870	COG0668	transmembrane transport
LPS07_00880	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LPS07_00885	COG1335	isochorismatase
LPS07_00890	COG1522	sequence-specific DNA binding
LPS07_00915	COG2205	protein histidine kinase activity
LPS07_00915	COG2198	Histidine kinase
LPS07_00915	COG0784	Response regulator, receiver
LPS07_00920	COG3162	membrane
LPS07_00925	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LPS07_00935	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LPS07_00960	COG1309	transcriptional regulator
LPS07_00980	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LPS07_00980	COG0351	phosphomethylpyrimidine kinase
LPS07_00980	COG0352	thiamine-phosphate diphosphorylase activity
LPS07_00990	COG2814	Major facilitator Superfamily
LPS07_01005	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LPS07_01015	COG1113	amino acid transport
LPS07_01025	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LPS07_01030	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_01040	COG1335	isochorismatase
LPS07_01070	COG2814	Major facilitator Superfamily
LPS07_01075	COG0583	DNA-binding transcription factor activity
LPS07_01095	COG0667	Aldo Keto reductase
LPS07_01130	COG1733	regulation of RNA biosynthetic process
LPS07_01135	COG2249	NAD(P)H dehydrogenase (quinone) activity
LPS07_01145	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_01150	COG1881	PFAM PEBP family protein
LPS07_01165	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LPS07_01170	COG2207	Transcriptional regulator
LPS07_01230	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LPS07_01245	COG2329	Antibiotic biosynthesis monooxygenase
LPS07_01260	COG1132	(ABC) transporter
LPS07_01280	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LPS07_01310	COG0427	acetyl-CoA hydrolase
LPS07_01335	COG0659	secondary active sulfate transmembrane transporter activity
LPS07_01340	COG4221	oxidoreductase activity
LPS07_01345	COG2873	o-acetylhomoserine
LPS07_01350	COG0488	(ABC) transporter
LPS07_01435	COG0833	amino acid
LPS07_01480	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LPS07_01485	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LPS07_01500	COG2226	methyltransferase
LPS07_01550	COG0070	glutamate synthase
LPS07_01550	COG0069	glutamate synthase activity
LPS07_01550	COG0067	glutamate synthase
LPS07_01555	COG0493	'glutamate synthase
LPS07_01565	COG1704	LemA family
LPS07_01570	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LPS07_01590	COG3307	-O-antigen
LPS07_01615	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LPS07_01630	COG0194	GDP metabolic process
LPS07_01680	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LPS07_01690	COG0335	large ribosomal subunit rRNA binding
LPS07_01700	COG5380	lipid catabolic process
LPS07_01705	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LPS07_01720	COG5006	permease, DMT superfamily
LPS07_01725	COG5006	permease, DMT superfamily
LPS07_01730	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LPS07_01735	COG0277	FAD linked oxidase domain protein
LPS07_01745	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LPS07_01750	COG2249	NAD(P)H dehydrogenase (quinone) activity
LPS07_01765	COG1289	transmembrane transporter activity
LPS07_01775	COG0628	permease
LPS07_01780	COG1192	Involved in chromosome partitioning
LPS07_01810	COG0833	amino acid
LPS07_01815	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LPS07_01820	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LPS07_01830	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_01870	COG0583	DNA-binding transcription factor activity
LPS07_01900	COG0752	glycyl-tRNA synthetase alpha subunit
LPS07_01925	COG0617	tRNA 3'-terminal CCA addition
LPS07_01925	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LPS07_01925	COG0517	IMP dehydrogenase activity
LPS07_01930	COG1983	PspC domain protein
LPS07_01940	COG1960	acyl-CoA dehydrogenase activity
LPS07_01955	COG0408	coproporphyrinogen oxidase activity
LPS07_01975	COG0513	Belongs to the DEAD box helicase family
LPS07_01985	COG1127	ABC transporter
LPS07_01990	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LPS07_02000	COG2854	intermembrane phospholipid transfer
LPS07_02010	COG0598	Magnesium transport protein CorA
LPS07_02020	COG0494	nUDIX hydrolase
LPS07_02025	COG1040	competence protein
LPS07_02030	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LPS07_02050	COG1946	Acyl-CoA thioesterase
LPS07_02055	COG1301	dicarboxylic acid transport
LPS07_02070	COG1959	2 iron, 2 sulfur cluster binding
LPS07_02075	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LPS07_02075	COG1017	nitric oxide dioxygenase activity
LPS07_02085	COG0433	COG0433 Predicted ATPase
LPS07_02090	COG0626	cystathionine gamma-synthase activity
LPS07_02105	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LPS07_02110	COG0088	Forms part of the polypeptide exit tunnel
LPS07_02245	COG1960	acyl-CoA dehydrogenase activity
LPS07_02250	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LPS07_02280	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LPS07_02285	COG0339	signal peptide processing
LPS07_02290	COG0557	exoribonuclease II activity
LPS07_02340	COG0179	Fumarylacetoacetate (FAA) hydrolase
LPS07_02345	COG1295	ribonuclease BN
LPS07_02380	COG1702	phosphate starvation-inducible protein PhoH
LPS07_02390	COG1196	nuclear chromosome segregation
LPS07_02390	COG0739	heme binding
LPS07_02390	COG0741	lytic transglycosylase activity
LPS07_02420	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LPS07_02425	COG1183	phosphatidylcholine synthase activity
LPS07_02470	COG1960	acyl-CoA dehydrogenase activity
LPS07_02475	COG1309	transcriptional regulator
LPS07_02490	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LPS07_02495	COG1960	acyl-CoA dehydrogenase activity
LPS07_02535	COG2969	positive regulation of protein catabolic process
LPS07_02545	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LPS07_02550	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LPS07_02555	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LPS07_02560	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LPS07_02565	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LPS07_02585	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LPS07_02595	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LPS07_02600	COG1408	metallophosphoesterase
LPS07_02605	COG2885	chlorophyll binding
LPS07_02605	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LPS07_02610	COG2199	diguanylate cyclase activity
LPS07_02650	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LPS07_02675	COG1607	acyl-coa hydrolase
LPS07_02710	COG2350	Protein conserved in bacteria
LPS07_02720	COG0613	PHP domain protein
LPS07_02725	COG3781	membrane
LPS07_02735	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LPS07_02740	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LPS07_02750	COG1862	Preprotein translocase
LPS07_02770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LPS07_02770	COG2198	Histidine kinase
LPS07_02770	COG2205	protein histidine kinase activity
LPS07_02770	COG0784	Response regulator, receiver
LPS07_02775	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LPS07_02790	COG0726	polysaccharide deacetylase
LPS07_02805	COG1216	Glycosyl transferase, family 2
LPS07_02855	COG0625	glutathione transferase activity
LPS07_02860	COG0583	DNA-binding transcription factor activity
LPS07_02865	COG1960	acyl-CoA dehydrogenase activity
LPS07_02870	COG1960	acyl-CoA dehydrogenase activity
LPS07_02880	COG2205	protein histidine kinase activity
LPS07_02885	COG0745	RESPONSE REGULATOR receiver
LPS07_02895	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LPS07_02915	COG2096	Adenosyltransferase
LPS07_02965	COG0285	dihydrofolate synthase activity
LPS07_02985	COG0450	alkyl hydroperoxide reductase
LPS07_03000	COG0477	Major facilitator Superfamily
LPS07_03005	COG1272	protein, Hemolysin III
LPS07_03015	COG2153	protein acetylation
LPS07_03035	COG0183	Belongs to the thiolase family
LPS07_03040	COG2207	Transcriptional regulator
LPS07_03060	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LPS07_03080	COG0183	Belongs to the thiolase family
LPS07_03090	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LPS07_03090	COG2885	chlorophyll binding
LPS07_03100	COG1690	Belongs to the RtcB family
LPS07_03105	COG0833	amino acid
LPS07_03115	COG2233	PERMEase
LPS07_03120	COG1217	gtp-binding protein TYPA
LPS07_03150	COG2094	Belongs to the DNA glycosylase MPG family
LPS07_03155	COG4772	TonB-dependent receptor
LPS07_03160	COG1902	pentaerythritol trinitrate reductase activity
LPS07_03175	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LPS07_03180	COG0354	folic acid binding
LPS07_03200	COG2233	PERMEase
LPS07_03205	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_03210	COG0251	oxidation-reduction process
LPS07_03215	COG1335	isochorismatase
LPS07_03220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LPS07_03225	COG0778	Nitroreductase
LPS07_03230	COG0596	Alpha beta hydrolase
LPS07_03235	COG3189	MarR family transcriptional regulator
LPS07_03240	COG2824	Alkylphosphonate utilization operon protein PhnA
LPS07_03245	COG3422	double-strand break repair
LPS07_03285	COG0840	transmembrane signaling receptor activity
LPS07_03305	COG5510	response to toxic substance
LPS07_03315	COG2832	Protein of unknown function (DUF454)
LPS07_03320	COG1376	ErfK ybiS ycfS ynhG family protein
LPS07_03360	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LPS07_03370	COG1289	transmembrane transporter activity
LPS07_03375	COG2814	Major facilitator Superfamily
LPS07_03395	COG1115	amino acid carrier protein
LPS07_03400	COG1752	Esterase of the alpha-beta hydrolase superfamily
LPS07_03405	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LPS07_03410	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
LPS07_03415	COG3590	peptidase
LPS07_03440	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LPS07_03450	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LPS07_03455	COG1077	Cell shape determining protein MreB Mrl
LPS07_03460	COG1792	Involved in formation and maintenance of cell shape
LPS07_03465	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LPS07_03470	COG0424	maF-like protein
LPS07_03475	COG1530	ribonuclease E activity
LPS07_03485	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LPS07_03505	COG2249	NAD(P)H dehydrogenase (quinone) activity
LPS07_03530	COG2207	Transcriptional regulator
LPS07_03560	COG3046	protein related to deoxyribodipyrimidine photolyase
LPS07_03570	COG1113	amino acid transport
LPS07_03580	COG0142	geranyltranstransferase activity
LPS07_03585	COG2315	Protein conserved in bacteria
LPS07_03600	COG1752	Esterase of the alpha-beta hydrolase superfamily
LPS07_03625	COG2194	sulfuric ester hydrolase activity
LPS07_03630	COG0745	RESPONSE REGULATOR receiver
LPS07_03635	COG0642	Histidine kinase
LPS07_03645	COG0004	ammonium transporteR
LPS07_03650	COG0583	DNA-binding transcription factor activity
LPS07_03675	COG0525	valine-tRNA ligase activity
LPS07_03685	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_03695	COG0393	Putative heavy-metal-binding
LPS07_03700	COG0393	Putative heavy-metal-binding
LPS07_03705	COG1538	Outer membrane efflux protein
LPS07_03715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_03720	COG0671	phosphoesterase, PA-phosphatase related
LPS07_03745	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LPS07_03760	COG1648	precorrin-2 dehydrogenase activity
LPS07_03760	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LPS07_03765	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LPS07_03800	COG0531	amino acid
LPS07_03815	COG0321	lipoyl(octanoyl) transferase activity
LPS07_03820	COG2921	Belongs to the UPF0250 family
LPS07_03860	COG2009	succinate dehydrogenase
LPS07_03865	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LPS07_03870	COG1053	succinate dehydrogenase
LPS07_03875	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LPS07_03900	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LPS07_03930	COG2354	Protein conserved in bacteria
LPS07_03935	COG2321	neutral zinc metallopeptidase
LPS07_03955	COG2843	Capsule synthesis protein
LPS07_03975	COG0589	response to stress
LPS07_03985	COG0251	oxidation-reduction process
LPS07_03990	COG1309	transcriptional regulator
LPS07_04005	COG0505	Belongs to the CarA family
LPS07_04025	COG1534	Rna-binding protein
LPS07_04035	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LPS07_04040	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LPS07_04085	COG0477	Major facilitator Superfamily
LPS07_04090	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LPS07_04105	COG1597	lipid kinase activity
LPS07_04110	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LPS07_04175	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LPS07_04415	COG0582	viral genome integration into host DNA
LPS07_04430	COG0584	glycerophosphoryl diester phosphodiesterase
LPS07_04450	COG0741	lytic transglycosylase activity
LPS07_04470	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LPS07_04475	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LPS07_04510	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_04520	COG0778	Nitroreductase
LPS07_04525	COG0300	oxidoreductase activity
LPS07_04535	COG1929	Belongs to the glycerate kinase type-1 family
LPS07_04540	COG0243	molybdopterin cofactor binding
LPS07_04545	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LPS07_04550	COG3339	Conserved Protein
LPS07_04575	COG1115	amino acid carrier protein
LPS07_04580	COG1113	amino acid transport
LPS07_04590	COG0019	diaminopimelate decarboxylase activity
LPS07_04600	COG1280	lysine exporter protein (LysE YggA)
LPS07_04605	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LPS07_04635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_04670	COG4591	ABC-type transport system involved in lipoprotein release permease component
LPS07_04675	COG1136	(ABC) transporter
LPS07_04680	COG0658	competence protein
LPS07_04680	COG2333	competence protein COMEC
LPS07_04690	COG0616	signal peptide processing
LPS07_04690	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LPS07_04695	COG0596	Alpha beta hydrolase
LPS07_04700	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LPS07_04710	COG0628	permease
LPS07_04745	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LPS07_04765	COG0823	Involved in the tonB-independent uptake of proteins
LPS07_04785	COG0824	Thioesterase
LPS07_04790	COG1473	amidohydrolase
LPS07_04810	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LPS07_04810	COG0047	phosphoribosylformylglycinamidine synthase activity
LPS07_04815	COG2814	Major facilitator Superfamily
LPS07_04825	COG1024	Enoyl-CoA hydratase
LPS07_04830	COG1051	belongs to the nudix hydrolase family
LPS07_04830	COG1056	cytidyltransferase-related domain
LPS07_04845	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LPS07_04860	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LPS07_04875	COG4625	pathogenesis
LPS07_04880	COG0583	DNA-binding transcription factor activity
LPS07_04885	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LPS07_04890	COG4208	sulfate ABC transporter
LPS07_04895	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LPS07_04905	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LPS07_04910	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LPS07_04915	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LPS07_04935	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LPS07_04945	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LPS07_04950	COG0481	GTPase activity
LPS07_04955	COG0681	Belongs to the peptidase S26 family
LPS07_04965	COG0571	ribonuclease III activity
LPS07_04970	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LPS07_04980	COG1381	Involved in DNA repair and RecF pathway recombination
LPS07_04985	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LPS07_04995	COG4221	oxidoreductase activity
LPS07_05025	COG0436	Aminotransferase
LPS07_05045	COG0556	nucleotide-excision repair
LPS07_05055	COG2962	Rard protein
LPS07_05100	COG2070	2-Nitropropane dioxygenase
LPS07_05115	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LPS07_05130	COG1215	transferase activity, transferring glycosyl groups
LPS07_05145	COG0415	Belongs to the DNA photolyase family
LPS07_05155	COG1252	NADH dehydrogenase
LPS07_05160	COG1686	Belongs to the peptidase S11 family
LPS07_05175	COG1187	pseudouridine synthase activity
LPS07_05190	COG0477	Major facilitator Superfamily
LPS07_05195	COG0583	DNA-binding transcription factor activity
LPS07_05200	COG1823	symporter activity
LPS07_05210	COG0612	Peptidase, M16
LPS07_05245	COG0352	thiamine-phosphate diphosphorylase activity
LPS07_05280	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LPS07_05295	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LPS07_05300	COG0076	glutamate decarboxylase activity
LPS07_05310	COG1522	sequence-specific DNA binding
LPS07_05315	COG3961	Belongs to the TPP enzyme family
LPS07_05320	COG1113	amino acid transport
LPS07_05325	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LPS07_05330	COG0573	inorganic phosphate transmembrane transporter activity
LPS07_05340	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LPS07_05345	COG0616	signal peptide processing
LPS07_05385	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LPS07_05390	COG1686	Belongs to the peptidase S11 family
LPS07_05745	COG0582	viral genome integration into host DNA
LPS07_05760	COG0583	DNA-binding transcription factor activity
LPS07_05765	COG1067	ATP-dependent peptidase activity
LPS07_05770	COG2211	Major facilitator Superfamily
LPS07_05805	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LPS07_05810	COG1966	Carbon starvation protein
LPS07_05815	COG2879	small protein
LPS07_05910	COG1802	Transcriptional regulator
LPS07_05910	COG4626	Terminase
LPS07_05915	COG4695	Portal protein
LPS07_06030	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LPS07_06035	COG0582	viral genome integration into host DNA
LPS07_06065	COG2026	Addiction module toxin, RelE StbE family
LPS07_06080	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LPS07_06145	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LPS07_06150	COG1741	Belongs to the pirin family
LPS07_06165	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LPS07_06170	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LPS07_06175	COG4605	iron ion homeostasis
LPS07_06180	COG4604	ABC transporter, ATP-binding protein
LPS07_06185	COG4607	ABC-type enterochelin transport system periplasmic component
LPS07_06190	COG4774	siderophore transport
LPS07_06200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LPS07_06205	COG1021	2,3-dihydroxybenzoate-AMP ligase
LPS07_06210	COG1535	isochorismatase
LPS07_06210	COG3433	isochorismatase activity
LPS07_06220	COG1132	(ABC) transporter
LPS07_06225	COG1132	(ABC) transporter
LPS07_06230	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
LPS07_06240	COG1169	isochorismate synthase
LPS07_06255	COG3739	integral membrane protein
LPS07_06275	COG0302	gtp cyclohydrolase
LPS07_06285	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LPS07_06295	COG2840	Smr protein MutS2
LPS07_06315	COG0308	aminopeptidase N
LPS07_06320	COG0512	Glutamine amidotransferase of anthranilate synthase
LPS07_06340	COG0174	glutamine synthetase
LPS07_06350	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LPS07_06385	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LPS07_06390	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LPS07_06395	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LPS07_06415	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LPS07_06420	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LPS07_06425	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LPS07_06440	COG1960	acyl-CoA dehydrogenase activity
LPS07_06445	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LPS07_06450	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LPS07_06460	COG2223	nitrite transmembrane transporter activity
LPS07_06470	COG0024	Methionine aminopeptidase
LPS07_06475	COG0052	Belongs to the universal ribosomal protein uS2 family
LPS07_06490	COG2207	Transcriptional regulator
LPS07_06515	COG2951	lytic endotransglycosylase activity
LPS07_06520	COG0772	Belongs to the SEDS family
LPS07_06535	COG0842	Transport permease protein
LPS07_06540	COG1131	(ABC) transporter
LPS07_06585	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_06595	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LPS07_06600	COG4215	(ABC) transporter
LPS07_06605	COG4160	amino acid transport
LPS07_06610	COG4598	ABC transporter
LPS07_06620	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LPS07_06625	COG0826	peptidase U32
LPS07_06630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_06635	COG0384	phenazine biosynthesis protein PhzF
LPS07_06645	COG1720	tRNA m6t6A37 methyltransferase activity
LPS07_06655	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LPS07_06670	COG0642	Histidine kinase
LPS07_06680	COG0494	nUDIX hydrolase
LPS07_06690	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LPS07_06695	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LPS07_06700	COG3139	Protein of unknown function (DUF1315)
LPS07_06705	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LPS07_06710	COG1301	dicarboxylic acid transport
LPS07_06715	COG1960	acyl-CoA dehydrogenase activity
LPS07_06730	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LPS07_06740	COG2195	Cleaves the N-terminal amino acid of tripeptides
LPS07_06760	COG1690	Belongs to the RtcB family
LPS07_06770	COG4650	regulator
LPS07_06800	COG2363	Small membrane protein
LPS07_06825	COG0513	Belongs to the DEAD box helicase family
LPS07_06835	COG0778	Nitroreductase
LPS07_06865	COG1286	toxin biosynthetic process
LPS07_06895	COG1610	YqeY-like protein
LPS07_06925	COG0515	serine threonine protein kinase
LPS07_06925	COG2815	serine threonine protein kinase
LPS07_06950	COG1278	Cold shock
LPS07_06965	COG3243	poly(R)-hydroxyalkanoic acid synthase
LPS07_06970	COG0786	glutamate:sodium symporter activity
LPS07_06975	COG0475	glutathione-regulated potassium exporter activity
LPS07_06975	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LPS07_07035	COG2801	Transposase and inactivated derivatives
LPS07_07045	COG1309	transcriptional regulator
LPS07_07055	COG2985	domain, Protein
LPS07_07065	COG2995	paraquat-inducible protein a
LPS07_07070	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LPS07_07070	COG3008	intermembrane lipid transfer
LPS07_07080	COG2351	hydroxyisourate hydrolase activity
LPS07_07120	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LPS07_07130	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LPS07_07135	COG0642	Histidine kinase
LPS07_07140	COG0745	RESPONSE REGULATOR receiver
LPS07_07160	COG1794	racemase activity, acting on amino acids and derivatives
LPS07_07170	COG2175	clavaminate synthase activity
LPS07_07175	COG3246	L-lysine catabolic process to acetate
LPS07_07180	COG2814	Major facilitator Superfamily
LPS07_07195	COG2855	membrane
LPS07_07240	COG1301	dicarboxylic acid transport
LPS07_07250	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LPS07_07255	COG2011	ABC-type metal ion transport system permease component
LPS07_07260	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LPS07_07270	COG0151	Belongs to the GarS family
LPS07_07280	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LPS07_07310	COG2308	Evidence 4 Homologs of previously reported genes of
LPS07_07320	COG1305	Transglutaminase-like
LPS07_07330	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LPS07_07335	COG0305	Participates in initiation and elongation during chromosome replication
LPS07_07360	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LPS07_07365	COG1845	cytochrome c oxidase, subunit III
LPS07_07370	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LPS07_07400	COG0726	polysaccharide deacetylase
LPS07_07400	COG1649	PFAM Uncharacterised BCR, COG1649
LPS07_07405	COG1215	transferase activity, transferring glycosyl groups
LPS07_07410	COG3658	cytochrome
LPS07_07420	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LPS07_07435	COG0583	DNA-binding transcription factor activity
LPS07_07450	COG2890	protein-(glutamine-N5) methyltransferase activity
LPS07_07455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LPS07_07460	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LPS07_07475	COG1960	acyl-CoA dehydrogenase activity
LPS07_07480	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_07505	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
LPS07_07510	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LPS07_07520	COG2205	protein histidine kinase activity
LPS07_07525	COG0745	RESPONSE REGULATOR receiver
LPS07_07530	COG0174	glutamine synthetase
LPS07_07545	COG0477	Major facilitator Superfamily
LPS07_07550	COG0729	surface antigen
LPS07_07580	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LPS07_07585	COG2814	Major facilitator Superfamily
LPS07_07595	COG0583	DNA-binding transcription factor activity
LPS07_07610	COG1187	pseudouridine synthase activity
LPS07_07630	COG0802	atpase or kinase
LPS07_07635	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LPS07_07645	COG1923	regulation of RNA biosynthetic process
LPS07_07650	COG0697	spore germination
LPS07_07675	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LPS07_07680	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LPS07_07680	COG0519	Catalyzes the synthesis of GMP from XMP
LPS07_07685	COG4302	ethanolamine ammonia-lyase activity
LPS07_07690	COG4303	Ethanolamine ammonia lyase large subunit
LPS07_07695	COG0531	amino acid
LPS07_07715	COG1454	alcohol dehydrogenase
LPS07_07720	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LPS07_07745	COG0308	aminopeptidase N
LPS07_07785	COG1605	Chorismate mutase
LPS07_07800	COG4772	TonB-dependent receptor
LPS07_07805	COG4774	siderophore transport
LPS07_07860	COG3772	lysozyme
LPS07_07885	COG0583	DNA-binding transcription factor activity
LPS07_07920	COG0488	(ABC) transporter
LPS07_07925	COG0589	response to stress
LPS07_07945	COG3135	benzoate transporter
LPS07_07950	COG1522	sequence-specific DNA binding
LPS07_07960	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LPS07_07965	COG0583	DNA-binding transcription factor activity
LPS07_07975	COG0183	Belongs to the thiolase family
LPS07_07980	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_07985	COG2030	dehydratase
LPS07_08015	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LPS07_08030	COG0824	Thioesterase
LPS07_08035	COG1454	alcohol dehydrogenase
LPS07_08060	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LPS07_08090	COG0069	glutamate synthase activity
LPS07_08115	COG2814	Major facilitator Superfamily
LPS07_08130	COG0511	ligase activity, forming carbon-carbon bonds
LPS07_08155	COG4264	IucA IucC family
LPS07_08165	COG4264	IucA IucC family
LPS07_08170	COG2423	ornithine cyclodeaminase activity
LPS07_08175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LPS07_08185	COG1116	anion transmembrane transporter activity
LPS07_08185	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LPS07_08200	COG2146	nitrite reductase [NAD(P)H] activity
LPS07_08200	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LPS07_08205	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LPS07_08210	COG0243	molybdopterin cofactor binding
LPS07_08220	COG0243	molybdopterin cofactor binding
LPS07_08225	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LPS07_08240	COG0521	Mo-molybdopterin cofactor biosynthetic process
LPS07_08240	COG0315	cyclic pyranopterin monophosphate synthase activity
LPS07_08245	COG0303	'Molybdopterin
LPS07_08255	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_08260	COG0697	spore germination
LPS07_08285	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LPS07_08305	COG0596	Alpha beta hydrolase
LPS07_08355	COG2204	response regulator
LPS07_08360	COG3852	Histidine kinase
LPS07_08385	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LPS07_08390	COG0575	Belongs to the CDS family
LPS07_08425	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LPS07_08440	COG2137	regulation of response to DNA damage stimulus
LPS07_08450	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LPS07_08455	COG1011	Hydrolase
LPS07_08470	COG1522	sequence-specific DNA binding
LPS07_08480	COG1113	amino acid transport
LPS07_08500	COG0659	secondary active sulfate transmembrane transporter activity
LPS07_08520	COG5001	Diguanylate cyclase
LPS07_08520	COG3300	MHYT domain
LPS07_08535	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LPS07_08535	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LPS07_08535	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LPS07_08540	COG1105	Belongs to the carbohydrate kinase PfkB family
LPS07_08545	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LPS07_08545	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LPS07_08565	COG3193	protein, possibly involved in utilization of glycolate and propanediol
LPS07_08575	COG0024	Methionine aminopeptidase
LPS07_08580	COG0583	DNA-binding transcription factor activity
LPS07_08590	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LPS07_08595	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LPS07_08600	COG0517	IMP dehydrogenase activity
LPS07_08600	COG0516	GMP reductase activity
LPS07_08625	COG0552	protein localization to endoplasmic reticulum
LPS07_08650	COG4890	Cyd operon protein YbgT
LPS07_08655	COG1294	oxidase, subunit
LPS07_08670	COG1585	Membrane protein implicated in regulation of membrane protease activity
LPS07_08680	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LPS07_08695	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LPS07_08700	COG0569	domain protein
LPS07_08705	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LPS07_08735	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LPS07_08740	COG0542	response to heat
LPS07_08765	COG1902	pentaerythritol trinitrate reductase activity
LPS07_08765	COG0446	pyridine nucleotide-disulphide oxidoreductase
LPS07_08805	COG0148	phosphopyruvate hydratase activity
LPS07_08810	COG2323	membrane
LPS07_08820	COG4773	Receptor
LPS07_08825	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LPS07_08835	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LPS07_08840	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LPS07_08845	COG0183	Belongs to the thiolase family
LPS07_08850	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LPS07_08855	COG0596	Alpha beta hydrolase
LPS07_08860	COG2271	Major facilitator Superfamily
LPS07_08865	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LPS07_08870	COG3485	protocatechuate 3,4-dioxygenase
LPS07_08875	COG3485	protocatechuate 3,4-dioxygenase
LPS07_08880	COG0710	3-dehydroquinate dehydratase activity
LPS07_08885	COG3420	alginic acid biosynthetic process
LPS07_08890	COG3659	wide pore channel activity
LPS07_08895	COG4993	Dehydrogenase
LPS07_08905	COG2391	methyltransferase activity
LPS07_08920	COG1414	Transcriptional regulator
LPS07_08925	COG0583	DNA-binding transcription factor activity
LPS07_08930	COG1960	acyl-CoA dehydrogenase activity
LPS07_08955	COG2814	Major facilitator Superfamily
LPS07_08965	COG0154	amidase activity
LPS07_08985	COG4638	Rieske (2fe-2S)
LPS07_08995	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09005	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_09015	COG3733	amine oxidase
LPS07_09025	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_09030	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LPS07_09035	COG0183	Belongs to the thiolase family
LPS07_09040	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LPS07_09045	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LPS07_09055	COG4829	muconolactone delta-isomerase
LPS07_09060	COG4948	Mandelate Racemase Muconate Lactonizing
LPS07_09065	COG0583	DNA-binding transcription factor activity
LPS07_09075	COG2186	Transcriptional regulator
LPS07_09095	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_09100	COG2351	hydroxyisourate hydrolase activity
LPS07_09105	COG2233	PERMEase
LPS07_09115	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_09120	COG2186	Transcriptional regulator
LPS07_09130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LPS07_09140	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LPS07_09160	COG0446	pyridine nucleotide-disulphide oxidoreductase
LPS07_09160	COG1902	pentaerythritol trinitrate reductase activity
LPS07_09165	COG4221	oxidoreductase activity
LPS07_09200	COG1309	transcriptional regulator
LPS07_09205	COG0583	DNA-binding transcription factor activity
LPS07_09210	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09215	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09220	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09230	COG1960	acyl-CoA dehydrogenase activity
LPS07_09240	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_09270	COG1403	HNH endonuclease
LPS07_09275	COG0494	nUDIX hydrolase
LPS07_09300	COG0583	DNA-binding transcription factor activity
LPS07_09325	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LPS07_09330	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LPS07_09345	COG2831	hemolysin activation secretion protein
LPS07_09350	COG3210	domain, Protein
LPS07_09395	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_09400	COG0129	dihydroxy-acid dehydratase activity
LPS07_09410	COG0583	DNA-binding transcription factor activity
LPS07_09415	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LPS07_09425	COG2084	Dehydrogenase
LPS07_09440	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LPS07_09445	COG1120	ATPase activity
LPS07_09460	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LPS07_09510	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LPS07_09620	COG3539	Fimbrial protein
LPS07_09645	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LPS07_09655	COG0753	catalase activity
LPS07_09675	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LPS07_09685	COG2205	protein histidine kinase activity
LPS07_09690	COG0745	RESPONSE REGULATOR receiver
LPS07_09695	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_09700	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LPS07_09755	COG3433	isochorismatase activity
LPS07_09755	COG1535	isochorismatase
LPS07_09760	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09765	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LPS07_09770	COG4149	molybdate abc transporter
LPS07_09775	COG0725	ABC transporter, periplasmic molybdate-binding protein
LPS07_09785	COG4638	Rieske (2fe-2S)
LPS07_09790	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LPS07_09795	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LPS07_09795	COG0543	2 iron, 2 sulfur cluster binding
LPS07_09810	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_09820	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09840	COG2207	Transcriptional regulator
LPS07_09845	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_09850	COG2610	gluconate transmembrane transporter activity
LPS07_09870	COG0583	DNA-binding transcription factor activity
LPS07_09885	COG2031	fatty acid transporter
LPS07_09890	COG0183	Belongs to the thiolase family
LPS07_09895	COG0583	DNA-binding transcription factor activity
LPS07_09900	COG0583	DNA-binding transcription factor activity
LPS07_09915	COG1027	Aspartate ammonia-lyase
LPS07_09925	COG0477	Major facilitator Superfamily
LPS07_09935	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LPS07_09940	COG1733	regulation of RNA biosynthetic process
LPS07_09945	COG2207	Transcriptional regulator
LPS07_09945	COG3708	Transcriptional regulator
LPS07_09960	COG0730	response to heat
LPS07_09985	COG3781	membrane
LPS07_09990	COG1063	alcohol dehydrogenase
LPS07_10000	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LPS07_10005	COG0508	dehydrogenase complex catalyzes the overall conversion of
LPS07_10010	COG0022	dehydrogenase e1 component
LPS07_10015	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LPS07_10020	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LPS07_10035	COG3706	GGDEF domain
LPS07_10055	COG0133	tryptophan synthase activity
LPS07_10065	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LPS07_10095	COG0583	DNA-binding transcription factor activity
LPS07_10100	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LPS07_10110	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LPS07_10170	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LPS07_10175	COG4773	Receptor
LPS07_10200	COG0730	response to heat
LPS07_10205	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LPS07_10225	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LPS07_10250	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LPS07_10265	COG1960	acyl-CoA dehydrogenase activity
LPS07_10270	COG1960	acyl-CoA dehydrogenase activity
LPS07_10275	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LPS07_10280	COG2207	Transcriptional regulator
LPS07_10285	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LPS07_10290	COG0776	regulation of translation
LPS07_10315	COG0822	iron-sulfur transferase activity
LPS07_10320	COG0316	Belongs to the HesB IscA family
LPS07_10350	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LPS07_10370	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LPS07_10375	COG0702	epimerase
LPS07_10405	COG4172	Belongs to the ABC transporter superfamily
LPS07_10415	COG0601	transmembrane transport
LPS07_10420	COG0339	signal peptide processing
LPS07_10425	COG4166	transmembrane transport
LPS07_10470	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LPS07_10475	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LPS07_10490	COG2431	L-lysine efflux transmembrane transporter activity
LPS07_10505	COG0776	regulation of translation
LPS07_10570	COG0084	hydrolase, TatD family'
LPS07_10590	COG1663	tetraacyldisaccharide 4'-kinase activity
LPS07_10595	COG1132	(ABC) transporter
LPS07_10605	COG0811	peptide transport
LPS07_10610	COG1475	DNA binding
LPS07_10615	COG1192	Involved in chromosome partitioning
LPS07_10625	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LPS07_10630	COG3178	'Phosphotransferase
LPS07_10640	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LPS07_10665	COG0424	maF-like protein
LPS07_10670	COG2850	peptidyl-arginine hydroxylation
LPS07_10680	COG0640	Transcriptional regulator
LPS07_10690	COG3619	membrane
LPS07_10695	COG3122	Protein conserved in bacteria
LPS07_10700	COG1132	(ABC) transporter
LPS07_10720	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LPS07_10725	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LPS07_10735	COG0506	proline dehydrogenase activity
LPS07_10735	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LPS07_10735	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LPS07_10755	COG3698	Phosphodiester glycosidase
LPS07_10765	COG2353	YceI-like domain
LPS07_10775	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LPS07_10820	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LPS07_10820	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LPS07_10845	COG3539	Fimbrial protein
LPS07_10880	COG0583	DNA-binding transcription factor activity
LPS07_10885	COG0697	spore germination
LPS07_10895	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LPS07_10905	COG0583	DNA-binding transcription factor activity
LPS07_10935	COG1522	sequence-specific DNA binding
LPS07_10945	COG1126	abc transporter atp-binding protein
LPS07_10950	COG0765	amino acid transport
LPS07_10955	COG0765	amino acid transport
LPS07_10985	COG1464	Belongs to the NlpA lipoprotein family
LPS07_10995	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LPS07_11000	COG2011	ABC-type metal ion transport system permease component
LPS07_11005	COG0012	GTP binding
LPS07_11030	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LPS07_11065	COG2207	Transcriptional regulator
LPS07_11065	COG1917	Cupin 2, conserved barrel domain protein
LPS07_11070	COG0386	Belongs to the glutathione peroxidase family
LPS07_11080	COG0436	Aminotransferase
LPS07_11085	COG1301	dicarboxylic acid transport
LPS07_11120	COG3634	alkyl hydroperoxide reductase activity
LPS07_11135	COG0583	DNA-binding transcription factor activity
LPS07_11140	COG0431	NADPH-dependent FMN reductase
LPS07_11145	COG0798	PFAM Bile acid sodium symporter
LPS07_11155	COG0640	Transcriptional regulator
LPS07_11170	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LPS07_11180	COG0583	DNA-binding transcription factor activity
LPS07_11190	COG1953	Uracil, thiamine, allantoin
LPS07_11200	COG2175	clavaminate synthase activity
LPS07_11205	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LPS07_11210	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LPS07_11215	COG4521	taurine ABC transporter
LPS07_11225	COG0477	Major facilitator Superfamily
LPS07_11245	COG1271	oxidase subunit
LPS07_11250	COG1294	oxidase, subunit
LPS07_11260	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_11280	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LPS07_11300	COG3052	prosthetic group binding
LPS07_11305	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
LPS07_11330	COG1346	cytolysis
LPS07_11340	COG0583	DNA-binding transcription factor activity
LPS07_11345	COG0625	glutathione transferase activity
LPS07_11350	COG0625	glutathione transferase activity
LPS07_11370	COG0583	DNA-binding transcription factor activity
LPS07_11375	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_11385	COG1045	serine acetyltransferase
LPS07_11390	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LPS07_11395	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LPS07_11405	COG1280	lysine exporter protein (LysE YggA)
LPS07_11415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LPS07_11420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LPS07_11430	COG0765	amino acid transport
LPS07_11435	COG0765	amino acid transport
LPS07_11455	COG2205	protein histidine kinase activity
LPS07_11455	COG0784	Response regulator, receiver
LPS07_11500	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_11550	COG0583	DNA-binding transcription factor activity
LPS07_11560	COG2814	Major facilitator Superfamily
LPS07_11575	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_11580	COG1309	transcriptional regulator
LPS07_11585	COG1960	acyl-CoA dehydrogenase activity
LPS07_11590	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LPS07_11595	COG1024	Enoyl-CoA hydratase
LPS07_11600	COG4770	biotin carboxylase activity
LPS07_11610	COG0583	DNA-binding transcription factor activity
LPS07_11625	COG1960	acyl-CoA dehydrogenase activity
LPS07_11635	COG2814	Major facilitator Superfamily
LPS07_11645	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LPS07_11650	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LPS07_11655	COG2814	Major facilitator Superfamily
LPS07_11660	COG1960	acyl-CoA dehydrogenase activity
LPS07_11665	COG1024	Enoyl-CoA hydratase
LPS07_11670	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_11675	COG1250	3-hydroxyacyl-CoA dehydrogenase
LPS07_11680	COG0183	Belongs to the thiolase family
LPS07_11690	COG2814	Major facilitator Superfamily
LPS07_11700	COG1024	Enoyl-CoA hydratase
LPS07_11710	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LPS07_11715	COG1960	acyl-CoA dehydrogenase activity
LPS07_11720	COG2814	Major facilitator Superfamily
LPS07_11725	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LPS07_11730	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LPS07_11745	COG3842	ATPase activity
LPS07_11750	COG1840	ABC-type Fe3 transport system, periplasmic component
LPS07_11765	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_11770	COG1414	Transcriptional regulator
LPS07_11780	COG0583	DNA-binding transcription factor activity
LPS07_11795	COG2801	Transposase and inactivated derivatives
LPS07_11825	COG2050	protein possibly involved in aromatic compounds catabolism
LPS07_11835	COG3327	negative regulation of DNA-templated transcription, initiation
LPS07_11840	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LPS07_11845	COG0183	Belongs to the thiolase family
LPS07_11850	COG1250	3-hydroxyacyl-CoA dehydrogenase
LPS07_11855	COG1024	Enoyl-CoA hydratase
LPS07_11860	COG1024	Enoyl-CoA hydratase
LPS07_11865	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LPS07_11870	COG2151	metal-sulfur cluster biosynthetic enzyme
LPS07_11875	COG3396	Phenylacetate-CoA oxygenase
LPS07_11880	COG3460	Phenylacetate-CoA oxygenase
LPS07_11885	COG3396	Phenylacetate-CoA oxygenase
LPS07_11890	COG2030	dehydratase
LPS07_11890	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_11895	COG1760	l-serine dehydratase
LPS07_11910	COG0789	Transcriptional regulator
LPS07_11930	COG1063	alcohol dehydrogenase
LPS07_11935	COG1250	3-hydroxyacyl-CoA dehydrogenase
LPS07_11960	COG2801	Transposase and inactivated derivatives
LPS07_11975	COG3210	domain, Protein
LPS07_11980	COG2831	hemolysin activation secretion protein
LPS07_11985	COG0038	chloride channel
LPS07_11990	COG4770	biotin carboxylase activity
LPS07_12010	COG1914	H( )-stimulated, divalent metal cation uptake system
LPS07_12015	COG0583	DNA-binding transcription factor activity
LPS07_12025	COG1595	DNA-templated transcription, initiation
LPS07_12035	COG3220	belongs to the UPF0276 family
LPS07_12085	COG0702	epimerase
LPS07_12090	COG1733	regulation of RNA biosynthetic process
LPS07_12105	COG1051	belongs to the nudix hydrolase family
LPS07_12115	COG1595	DNA-templated transcription, initiation
LPS07_12120	COG3712	iron ion homeostasis
LPS07_12160	COG3038	cytochrome b561
LPS07_12165	COG0753	catalase activity
LPS07_12180	COG1469	GTP cyclohydrolase I activity
LPS07_12185	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LPS07_12185	COG4451	ribulose bisphosphate carboxylase, small
LPS07_12190	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LPS07_12205	COG1522	sequence-specific DNA binding
LPS07_12210	COG0531	amino acid
LPS07_12215	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LPS07_12230	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LPS07_12245	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LPS07_12255	COG4122	O-methyltransferase activity
LPS07_12285	COG1538	Outer membrane efflux protein
LPS07_12295	COG1137	ATPase activity
LPS07_12300	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LPS07_12310	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LPS07_12365	COG0668	transmembrane transport
LPS07_12410	COG1309	transcriptional regulator
LPS07_12420	COG2801	Transposase and inactivated derivatives
LPS07_12440	COG2226	methyltransferase
LPS07_12445	COG1011	Hydrolase
LPS07_12470	COG1278	Cold shock
LPS07_12475	COG1560	Kdo2-lipid A biosynthetic process
LPS07_12480	COG1280	lysine exporter protein (LysE YggA)
LPS07_12515	COG1570	exodeoxyribonuclease VII activity
LPS07_12565	COG0583	DNA-binding transcription factor activity
LPS07_12575	COG4638	Rieske (2fe-2S)
LPS07_12585	COG0633	Ferredoxin
LPS07_12585	COG0543	2 iron, 2 sulfur cluster binding
LPS07_12590	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_12595	COG3135	benzoate transporter
LPS07_12600	COG2814	Major facilitator Superfamily
LPS07_12615	COG1643	Atp-dependent helicase
LPS07_12640	COG3634	alkyl hydroperoxide reductase activity
LPS07_12660	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LPS07_12665	COG0625	glutathione transferase activity
LPS07_12675	COG2885	chlorophyll binding
LPS07_12710	COG0542	response to heat
LPS07_12725	COG1765	OsmC-like protein
LPS07_12740	COG0667	Aldo Keto reductase
LPS07_12755	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LPS07_12765	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LPS07_12775	COG0527	aspartate kinase activity
LPS07_12785	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LPS07_12795	COG3038	cytochrome b561
LPS07_12800	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LPS07_12805	COG2252	PERMEase
LPS07_12815	COG1741	Belongs to the pirin family
LPS07_12820	COG1309	transcriptional regulator
LPS07_12835	COG2072	flavoprotein involved in K transport
LPS07_12840	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LPS07_12845	COG0583	DNA-binding transcription factor activity
LPS07_12860	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LPS07_12890	COG1944	ATP diphosphatase activity
LPS07_12910	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LPS07_12925	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LPS07_12945	COG1024	Enoyl-CoA hydratase
LPS07_12950	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_12960	COG1960	acyl-CoA dehydrogenase activity
LPS07_12985	COG2186	Transcriptional regulator
LPS07_12990	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_13000	COG4948	Mandelate Racemase Muconate Lactonizing
LPS07_13005	COG2271	Major facilitator Superfamily
LPS07_13010	COG2721	sulfolactate sulfo-lyase activity
LPS07_13015	COG0697	spore germination
LPS07_13035	COG3210	domain, Protein
LPS07_13045	COG1113	amino acid transport
LPS07_13065	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_13085	COG0531	amino acid
LPS07_13095	COG1113	amino acid transport
LPS07_13140	COG4269	membrane
LPS07_13155	COG0582	viral genome integration into host DNA
LPS07_13230	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LPS07_13240	COG2184	nucleotidyltransferase activity
LPS07_13285	COG1902	pentaerythritol trinitrate reductase activity
LPS07_13285	COG0446	pyridine nucleotide-disulphide oxidoreductase
LPS07_13295	COG3706	GGDEF domain
LPS07_13295	COG5001	Diguanylate cyclase
LPS07_13295	COG2203	Gaf domain
LPS07_13295	COG4251	negative regulation of phosphorylation
LPS07_13305	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LPS07_13335	COG4172	Belongs to the ABC transporter superfamily
LPS07_13340	COG4239	(ABC) transporter, permease
LPS07_13345	COG4174	ABC transporter (Permease)
LPS07_13350	COG4166	transmembrane transport
LPS07_13355	COG0741	lytic transglycosylase activity
LPS07_13355	COG1388	LysM domain
LPS07_13355	COG1388	LysM domain
LPS07_13355	COG0741	lytic transglycosylase activity
LPS07_13400	COG0583	DNA-binding transcription factor activity
LPS07_13405	COG1279	arginine transmembrane transporter activity
LPS07_13425	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_13430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_13435	COG0006	proline dipeptidase activity
LPS07_13590	COG3566	protein conserved in bacteria
LPS07_13605	COG3567	Phage-associated protein, HI1409 family
LPS07_13610	COG5410	chromosome segregation
LPS07_13805	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LPS07_13820	COG3384	dioxygenase
LPS07_13830	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LPS07_13835	COG2878	Part of a membrane complex involved in electron transport
LPS07_13840	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LPS07_13865	COG0768	penicillin binding
LPS07_13870	COG0742	ribosomal rna small subunit methyltransferase
LPS07_13885	COG0830	nickel cation binding
LPS07_13895	COG0804	urea catabolic process
LPS07_13920	COG3015	lipoprotein NlpE involved in copper resistance
LPS07_13935	COG1253	flavin adenine dinucleotide binding
LPS07_13940	COG2851	Citrate transporter
LPS07_13995	COG1773	rubredoxin
LPS07_14000	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LPS07_14005	COG0596	Alpha beta hydrolase
LPS07_14010	COG0583	DNA-binding transcription factor activity
LPS07_14040	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LPS07_14045	COG4181	ATPase activity
LPS07_14090	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LPS07_14110	COG0306	phosphate transporter
LPS07_14125	COG3958	Transketolase
LPS07_14130	COG3959	Transketolase, thiamine diphosphate binding domain
LPS07_14135	COG2271	Major facilitator Superfamily
LPS07_14140	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_14145	COG0583	DNA-binding transcription factor activity
LPS07_14160	COG2223	nitrite transmembrane transporter activity
LPS07_14165	COG2207	Transcriptional regulator
LPS07_14170	COG2066	Belongs to the glutaminase family
LPS07_14175	COG0242	peptide deformylase activity
LPS07_14180	COG0477	Major facilitator Superfamily
LPS07_14190	COG0028	Belongs to the TPP enzyme family
LPS07_14205	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_14210	COG2267	carboxylic ester hydrolase activity
LPS07_14220	COG2271	Major facilitator Superfamily
LPS07_14235	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_14255	COG1414	Transcriptional regulator
LPS07_14270	COG1024	Enoyl-CoA hydratase
LPS07_14280	COG1215	transferase activity, transferring glycosyl groups
LPS07_14285	COG1649	PFAM Uncharacterised BCR, COG1649
LPS07_14285	COG0726	polysaccharide deacetylase
LPS07_14295	COG4681	YaeQ
LPS07_14305	COG0523	cobalamin synthesis protein
LPS07_14315	COG1607	acyl-coa hydrolase
LPS07_14325	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LPS07_14330	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LPS07_14335	COG1309	transcriptional regulator
LPS07_14360	COG2040	homocysteine
LPS07_14365	COG0531	amino acid
LPS07_14415	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LPS07_14420	COG0477	Major facilitator Superfamily
LPS07_14430	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
LPS07_14475	COG1401	restriction endodeoxyribonuclease activity
LPS07_14485	COG0405	Gamma-glutamyltransferase
LPS07_14490	COG2814	Major facilitator Superfamily
LPS07_14500	COG2050	protein possibly involved in aromatic compounds catabolism
LPS07_14515	COG1090	epimerase
LPS07_14535	COG0420	3'-5' exonuclease activity
LPS07_14560	COG0735	belongs to the Fur family
LPS07_14565	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LPS07_14570	COG2914	Belongs to the UPF0125 (RnfH) family
LPS07_14585	COG0121	glutamine amidotransferase
LPS07_14600	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LPS07_14610	COG0210	DNA helicase
LPS07_14615	COG2885	chlorophyll binding
LPS07_14620	COG0204	Acyl-transferase
LPS07_14635	COG2894	cell division
LPS07_14655	COG1280	lysine exporter protein (LysE YggA)
LPS07_14660	COG1674	ftsk spoiiie
LPS07_14665	COG0492	ferredoxin-NADP+ reductase activity
LPS07_14670	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LPS07_14680	COG0456	acetyltransferase
LPS07_14695	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LPS07_14700	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LPS07_14710	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LPS07_14725	COG1981	membrane
LPS07_14735	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LPS07_14735	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LPS07_14755	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_14760	COG4638	Rieske (2fe-2S)
LPS07_14765	COG0657	acetylesterase activity
LPS07_14775	COG0473	3-isopropylmalate dehydrogenase activity
LPS07_14780	COG0583	DNA-binding transcription factor activity
LPS07_14800	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LPS07_14835	COG0358	DNA primase activity
LPS07_14850	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LPS07_14880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LPS07_14910	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LPS07_14920	COG0352	thiamine-phosphate diphosphorylase activity
LPS07_14920	COG0351	phosphomethylpyrimidine kinase
LPS07_14920	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LPS07_14925	COG1652	LysM domain
LPS07_14950	COG1399	metal-binding, possibly nucleic acid-binding protein
LPS07_14955	COG3101	peptidyl-lysine hydroxylation
LPS07_14960	COG0009	L-threonylcarbamoyladenylate synthase
LPS07_14965	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LPS07_14970	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LPS07_14985	COG4106	trans-aconitate 2-methyltransferase activity
LPS07_15000	COG0596	Alpha beta hydrolase
LPS07_15000	COG2226	methyltransferase
LPS07_15000	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LPS07_15010	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
LPS07_15015	COG2223	nitrite transmembrane transporter activity
LPS07_15035	COG1196	nuclear chromosome segregation
LPS07_15045	COG0730	response to heat
LPS07_15060	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LPS07_15070	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LPS07_15115	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LPS07_15120	COG0489	protein tyrosine kinase activity
LPS07_15130	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LPS07_15130	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LPS07_15165	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LPS07_15170	COG2081	HI0933 family
LPS07_15180	COG0668	transmembrane transport
LPS07_15200	COG0583	DNA-binding transcription factor activity
LPS07_15220	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LPS07_15225	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LPS07_15255	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
LPS07_15280	COG2199	diguanylate cyclase activity
LPS07_15295	COG0745	RESPONSE REGULATOR receiver
LPS07_15315	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LPS07_15320	COG0384	phenazine biosynthesis protein PhzF
LPS07_15365	COG0135	phosphoribosylanthranilate isomerase activity
LPS07_15370	COG0673	inositol 2-dehydrogenase activity
LPS07_15375	COG1324	tolerance protein
LPS07_15400	COG2826	transposase and inactivated derivatives, IS30 family
LPS07_15415	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LPS07_15430	COG0583	DNA-binding transcription factor activity
LPS07_15480	COG0583	DNA-binding transcription factor activity
LPS07_15495	COG0583	DNA-binding transcription factor activity
LPS07_15500	COG1053	succinate dehydrogenase
LPS07_15515	COG1309	transcriptional regulator
LPS07_15525	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LPS07_15530	COG2814	Major facilitator Superfamily
LPS07_15535	COG1960	acyl-CoA dehydrogenase activity
LPS07_15540	COG0583	DNA-binding transcription factor activity
LPS07_15545	COG1063	alcohol dehydrogenase
LPS07_15575	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LPS07_15580	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LPS07_15585	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LPS07_15605	COG2132	Multicopper oxidase
LPS07_15615	COG0561	phosphatase activity
LPS07_15620	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LPS07_15645	COG1214	PFAM Peptidase M22, glycoprotease
LPS07_15705	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LPS07_15710	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LPS07_15715	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LPS07_15775	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LPS07_15785	COG1846	Transcriptional regulator
LPS07_15790	COG1764	response to oxidative stress
LPS07_15830	COG0037	tRNA processing
LPS07_15840	COG0248	Ppx GppA phosphatase
LPS07_15870	COG0072	phenylalanine-tRNA ligase activity
LPS07_15900	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LPS07_15915	COG1238	metal cluster binding
LPS07_15920	COG0625	glutathione transferase activity
LPS07_15935	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_15940	COG3028	Belongs to the UPF0307 family
LPS07_15945	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LPS07_15965	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LPS07_15970	COG0617	tRNA 3'-terminal CCA addition
LPS07_15975	COG1555	photosystem II stabilization
LPS07_15980	COG3956	TIGRFAM MazG family protein
LPS07_15990	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LPS07_16005	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LPS07_16010	COG0784	Response regulator, receiver
LPS07_16010	COG2205	protein histidine kinase activity
LPS07_16010	COG5002	protein histidine kinase activity
LPS07_16015	COG1024	Enoyl-CoA hydratase
LPS07_16020	COG2084	Dehydrogenase
LPS07_16025	COG3622	Belongs to the hyi family
LPS07_16055	COG0697	spore germination
LPS07_16065	COG2814	Major facilitator Superfamily
LPS07_16070	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LPS07_16080	COG0583	DNA-binding transcription factor activity
LPS07_16090	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LPS07_16105	COG0084	hydrolase, TatD family'
LPS07_16120	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LPS07_16145	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LPS07_16150	COG0440	acetolactate synthase activity
LPS07_16155	COG0028	Belongs to the TPP enzyme family
LPS07_16175	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_16180	COG0577	efflux transmembrane transporter activity
LPS07_16180	COG1136	(ABC) transporter
LPS07_16200	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LPS07_16205	COG1162	GTPase activity
LPS07_16215	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LPS07_16235	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LPS07_16255	COG1426	Protein conserved in bacteria
LPS07_16290	COG0793	Belongs to the peptidase S41A family
LPS07_16305	COG2267	carboxylic ester hydrolase activity
LPS07_16315	COG1012	belongs to the aldehyde dehydrogenase family
LPS07_16320	COG3265	gluconokinase activity
LPS07_16330	COG0800	Aldolase
LPS07_16345	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LPS07_16350	COG0280	phosphate acetyltransferase
LPS07_16350	COG0857	belongs to the CobB CobQ family
LPS07_16355	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LPS07_16355	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LPS07_16375	COG0740	serine-type endopeptidase activity
LPS07_16385	COG4774	siderophore transport
LPS07_16395	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LPS07_16405	COG2813	Specifically methylates the guanine in position
LPS07_16405	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LPS07_16505	COG0788	formyltetrahydrofolate deformylase activity
LPS07_16530	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LPS07_16530	COG4651	solute:proton antiporter activity
LPS07_16550	COG0724	RNA recognition motif
LPS07_16555	COG0210	DNA helicase
LPS07_16580	COG1733	regulation of RNA biosynthetic process
LPS07_16585	COG0604	alcohol dehydrogenase
LPS07_16590	COG2900	Belongs to the SlyX family
LPS07_16595	COG0488	(ABC) transporter
LPS07_16605	COG1560	Kdo2-lipid A biosynthetic process
LPS07_16615	COG1301	dicarboxylic acid transport
LPS07_16670	COG0473	3-isopropylmalate dehydrogenase activity
LPS07_16735	COG0583	DNA-binding transcription factor activity
LPS07_16745	COG0625	glutathione transferase activity
LPS07_16750	COG2378	regulation of single-species biofilm formation
LPS07_16755	COG0546	phosphoglycolate phosphatase activity
LPS07_16765	COG1530	ribonuclease E activity
LPS07_16770	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_16785	COG0583	DNA-binding transcription factor activity
LPS07_16790	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_16795	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LPS07_16805	COG0534	Mate efflux family protein
LPS07_16820	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LPS07_16845	COG0493	'glutamate synthase
LPS07_16855	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LPS07_16860	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LPS07_16875	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LPS07_16885	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
LPS07_16885	COG0644	oxidoreductase
LPS07_16900	COG4535	Mg2 and Co2 transporter CorC
LPS07_16910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LPS07_16930	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LPS07_16940	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LPS07_16950	COG0484	heat shock protein binding
LPS07_16955	COG0789	Transcriptional regulator
LPS07_16960	COG0598	Magnesium transport protein CorA
LPS07_16965	COG1185	polyribonucleotide nucleotidyltransferase activity
LPS07_16975	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LPS07_16980	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LPS07_16985	COG1074	ATP-dependent DNA helicase activity
LPS07_16990	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LPS07_17010	COG2226	methyltransferase
LPS07_17025	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LPS07_17035	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LPS07_17050	COG2111	Na H antiporter
LPS07_17050	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LPS07_17055	COG1006	Multisubunit Na H antiporter MnhC subunit
LPS07_17060	COG0651	ATP synthesis coupled electron transport
LPS07_17065	COG1863	multisubunit Na H antiporter MnhE subunit
LPS07_17070	COG2212	antiporter activity
LPS07_17075	COG1320	monovalent cation:proton antiporter activity
LPS07_17080	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LPS07_17090	COG0195	Participates in both transcription termination and antitermination
LPS07_17140	COG0237	dephospho-CoA kinase activity
LPS07_17150	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LPS07_17165	COG0497	DNA recombination
LPS07_17175	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LPS07_17210	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LPS07_17210	COG2169	Transcriptional regulator
LPS07_17220	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LPS07_17290	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LPS07_17305	COG0326	Molecular chaperone. Has ATPase activity
LPS07_17320	COG2056	Na+-H+ antiporter family
LPS07_17390	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LPS07_17420	COG0546	phosphoglycolate phosphatase activity
LPS07_17425	COG1716	ATPase activity
LPS07_17470	COG0181	hydroxymethylbilane synthase activity
LPS07_17480	COG3275	phosphorelay sensor kinase activity
LPS07_17500	COG1538	Outer membrane efflux protein
LPS07_17510	COG0697	spore germination
LPS07_17535	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LPS07_17540	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LPS07_17545	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LPS07_17550	COG0772	Belongs to the SEDS family
LPS07_17575	COG4974	Belongs to the 'phage' integrase family
LPS07_17580	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LPS07_17590	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LPS07_17600	COG2197	response regulator
LPS07_17615	COG0793	Belongs to the peptidase S41A family
LPS07_17620	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LPS07_17625	COG0795	lipopolysaccharide-transporting ATPase activity
LPS07_17665	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LPS07_17665	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LPS07_17675	COG0004	ammonium transporteR
LPS07_17680	COG0347	Belongs to the P(II) protein family
LPS07_17690	COG0606	chelatase, subunit chli
LPS07_17695	COG0431	NADPH-dependent FMN reductase
LPS07_17700	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_17705	COG0235	Class ii aldolase
LPS07_17710	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LPS07_17730	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LPS07_17745	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_17755	COG0477	Major facilitator Superfamily
LPS07_17760	COG2860	membrane
LPS07_17770	COG1253	flavin adenine dinucleotide binding
LPS07_17780	COG2814	Major facilitator Superfamily
LPS07_17790	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LPS07_17830	COG0655	NAD(P)H dehydrogenase (quinone) activity
LPS07_17845	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LPS07_17910	COG0758	DNA mediated transformation
LPS07_17920	COG0697	spore germination
LPS07_17925	COG1309	transcriptional regulator
LPS07_17940	COG0386	Belongs to the glutathione peroxidase family
LPS07_17955	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LPS07_17965	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LPS07_18005	COG1121	(ABC) transporter
LPS07_18010	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LPS07_18015	COG1280	lysine exporter protein (LysE YggA)
LPS07_18020	COG2837	iron assimilation
LPS07_18025	COG0281	malic enzyme
LPS07_18065	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LPS07_18065	COG0519	Catalyzes the synthesis of GMP from XMP
LPS07_18070	COG4399	Belongs to the UPF0754 family
LPS07_18075	COG2259	Doxx family
LPS07_18080	COG0586	Pfam SNARE associated Golgi protein
LPS07_18095	COG1192	Involved in chromosome partitioning
LPS07_18105	COG0271	Belongs to the BolA IbaG family
LPS07_18145	COG3321	synthase
LPS07_18145	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
LPS07_18145	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LPS07_18145	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LPS07_18150	COG1960	acyl-CoA dehydrogenase activity
LPS07_18155	COG0318	PFAM AMP-dependent synthetase and ligase
LPS07_18160	COG2197	response regulator
LPS07_18170	COG3916	Acyl-homoserine-lactone synthase
LPS07_18175	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LPS07_18185	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LPS07_18190	COG1113	amino acid transport
LPS07_18195	COG0697	spore germination
LPS07_18200	COG0477	Major facilitator Superfamily
LPS07_18205	COG1024	Enoyl-CoA hydratase
LPS07_18210	COG1024	Enoyl-CoA hydratase
LPS07_18215	COG1960	acyl-CoA dehydrogenase activity
LPS07_18220	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LPS07_18240	COG1113	amino acid transport
LPS07_18245	COG1113	amino acid transport
LPS07_18250	COG0251	oxidation-reduction process
LPS07_18290	COG0564	pseudouridine synthase activity
LPS07_18370	COG1051	belongs to the nudix hydrolase family
LPS07_18395	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LPS07_18410	COG1802	Transcriptional regulator
LPS07_18420	COG1448	Aminotransferase
LPS07_18425	COG0277	FAD linked oxidase domain protein
LPS07_18435	COG2186	Transcriptional regulator
LPS07_18445	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LPS07_18460	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LPS07_18465	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LPS07_18500	COG1091	dTDP-4-dehydrorhamnose reductase activity
LPS07_18510	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LPS07_18530	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LPS07_18560	COG0728	peptidoglycan biosynthetic process
LPS07_18565	COG3023	N-Acetylmuramoyl-L-alanine amidase
LPS07_18620	COG0546	phosphoglycolate phosphatase activity
LPS07_18625	COG1028	Short-chain dehydrogenase reductase Sdr
LPS07_18640	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LPS07_18640	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LPS07_18645	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LPS07_18650	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LPS07_18655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LPS07_18660	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LPS07_18665	COG1116	anion transmembrane transporter activity
LPS07_18670	COG1309	transcriptional regulator
LPS07_18675	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LPS07_18685	COG0196	riboflavin kinase activity
LPS07_18690	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LPS07_18700	COG1047	Peptidyl-prolyl cis-trans
LPS07_18740	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LPS07_18745	COG0657	acetylesterase activity
LPS07_18765	COG0583	DNA-binding transcription factor activity
LPS07_18795	COG2951	lytic endotransglycosylase activity
LPS07_18800	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LPS07_18815	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LPS07_18825	COG0671	phosphoesterase, PA-phosphatase related
LPS07_18830	COG0861	Integral membrane protein TerC family
LPS07_18840	COG0754	glutathionylspermidine amidase activity
LPS07_18850	COG0402	S-adenosylhomocysteine deaminase activity
LPS07_18865	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LPS07_18870	COG1230	cation diffusion facilitator family transporter
LPS07_18885	COG0706	membrane insertase activity
LPS07_18940	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LPS07_19000	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LPS07_19020	COG3335	DDE superfamily endonuclease
LPS07_19030	COG1660	Displays ATPase and GTPase activities
LPS07_19290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LPS07_19295	COG1230	cation diffusion facilitator family transporter
LPS07_19305	COG0640	Transcriptional regulator
LPS07_19315	COG0789	Transcriptional regulator
LPS07_19420	COG1192	Involved in chromosome partitioning
LPS07_19425	COG1475	DNA binding
LPS07_19575	COG4372	Transposase
LPS07_19625	COG2009	succinate dehydrogenase
LPS07_19640	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LPS07_19650	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LPS07_19685	COG0625	glutathione transferase activity
LPS07_19690	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LPS07_19710	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LPS07_19745	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LPS07_20010	COG0789	Transcriptional regulator
LPS07_20035	COG0789	Transcriptional regulator
LPS07_20120	COG1525	nuclease
LPS07_20130	COG2189	Belongs to the N(4) N(6)-methyltransferase family
LPS07_20160	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LPS07_20170	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LPS07_20175	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LPS07_20190	COG0183	Belongs to the thiolase family
LPS07_20195	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LPS07_20230	COG1484	DNA-dependent DNA replication
LPS07_20270	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LPS07_20290	COG2189	Belongs to the N(4) N(6)-methyltransferase family
LPS07_20295	COG3421	Type III restriction
LPS07_20325	COG3657	addiction module killer protein
LPS07_20330	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LPS07_20350	COG0488	(ABC) transporter
LPS07_20355	COG3173	Aminoglycoside phosphotransferase
LPS07_20440	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
LPS07_20490	COG1192	Involved in chromosome partitioning
LPS07_20515	COG2026	Addiction module toxin, RelE StbE family
LPS07_20525	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs