locus-tag class description DDE02_00015 PF02798 Glutathione S-transferase, N-terminal domain DDE02_00025 PF00209 Sodium:neurotransmitter symporter family DDE02_00035 PF01189 16S rRNA methyltransferase RsmB/F DDE02_00035 PF01029 NusB family DDE02_00040 PF02911 Formyl transferase, C-terminal domain DDE02_00040 PF00551 Formyl transferase DDE02_00045 PF00920 Dehydratase family DDE02_00060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_00060 PF03466 LysR substrate binding domain DDE02_00065 PF00860 Permease family DDE02_00070 PF00311 Phosphoenolpyruvate carboxylase DDE02_00075 PF00440 Bacterial regulatory proteins, tetR family DDE02_00075 PF08361 MAATS-type transcriptional repressor, C-terminal region DDE02_00080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_00085 PF00873 AcrB/AcrD/AcrF family DDE02_00095 PF00226 DnaJ domain DDE02_00095 PF01556 DnaJ C terminal domain DDE02_00095 PF00684 DnaJ central domain DDE02_00105 PF05173 Dihydrodipicolinate reductase, C-terminus DDE02_00105 PF01113 Dihydrodipicolinate reductase, N-terminus DDE02_00115 PF07690 Major Facilitator Superfamily DDE02_00120 PF00248 Aldo/keto reductase family DDE02_00125 PF03466 LysR substrate binding domain DDE02_00125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_00140 PF00392 Bacterial regulatory proteins, gntR family DDE02_00140 PF00155 Aminotransferase class I and II DDE02_00145 PF00107 Zinc-binding dehydrogenase DDE02_00145 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_00150 PF03352 Methyladenine glycosylase DDE02_00165 PF00633 Helix-hairpin-helix motif DDE02_00165 PF00730 HhH-GPD superfamily base excision DNA repair protein DDE02_00165 PF14815 NUDIX domain DDE02_00165 PF10576 Iron-sulfur binding domain of endonuclease III DDE02_00180 PF07043 Protein of unknown function (DUF1328) DDE02_00185 PF03692 Putative zinc- or iron-chelating domain DDE02_00190 PF07995 Glucose / Sorbosone dehydrogenase DDE02_00195 PF12002 MgsA AAA+ ATPase C terminal DDE02_00195 PF16193 AAA C-terminal domain DDE02_00195 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_00200 PF01226 Formate/nitrite transporter DDE02_00210 PF01259 SAICAR synthetase DDE02_00220 PF00701 Dihydrodipicolinate synthetase family DDE02_00225 PF00857 Isochorismatase family DDE02_00230 PF01758 Sodium Bile acid symporter family DDE02_00235 PF01554 MatE DDE02_00240 PF04463 Protein of unknown function (DUF523) DDE02_00245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_00255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_00260 PF14497 Glutathione S-transferase, C-terminal domain DDE02_00260 PF02798 Glutathione S-transferase, N-terminal domain DDE02_00270 PF00324 Amino acid permease DDE02_00280 PF07683 Cobalamin synthesis protein cobW C-terminal domain DDE02_00280 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDE02_00290 PF00392 Bacterial regulatory proteins, gntR family DDE02_00290 PF07702 UTRA domain DDE02_00295 PF05962 HutD DDE02_00300 PF01175 Urocanase Rossmann-like domain DDE02_00300 PF17392 Urocanase C-terminal domain DDE02_00300 PF17391 Urocanase N-terminal domain DDE02_00305 PF00221 Aromatic amino acid lyase DDE02_00310 PF00324 Amino acid permease DDE02_00315 PF01979 Amidohydrolase family DDE02_00320 PF00491 Arginase family DDE02_00340 PF16861 Carbamoyltransferase C-terminus DDE02_00340 PF02543 Carbamoyltransferase N-terminus DDE02_00360 PF01380 SIS domain DDE02_00365 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_00365 PF14602 Hexapeptide repeat of succinyl-transferase DDE02_00365 PF12804 MobA-like NTP transferase domain DDE02_00370 PF04608 Phosphatidylglycerophosphatase A DDE02_00375 PF00586 AIR synthase related protein, N-terminal domain DDE02_00375 PF02769 AIR synthase related protein, C-terminal domain DDE02_00380 PF01029 NusB family DDE02_00385 PF00885 6,7-dimethyl-8-ribityllumazine synthase DDE02_00390 PF00925 GTP cyclohydrolase II DDE02_00390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDE02_00420 PF02580 D-Tyr-tRNA(Tyr) deacylase DDE02_00425 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DDE02_00425 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DDE02_00430 PF00581 Rhodanese-like domain DDE02_00435 PF02666 Phosphatidylserine decarboxylase DDE02_00440 PF03069 Acetamidase/Formamidase family DDE02_00450 PF01547 Bacterial extracellular solute-binding protein DDE02_00460 PF11808 Phosphate regulon sensor protein PhoR DDE02_00460 PF00989 PAS fold DDE02_00460 PF00512 His Kinase A (phospho-acceptor) domain DDE02_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_00465 PF00486 Transcriptional regulatory protein, C terminal DDE02_00465 PF00072 Response regulator receiver domain DDE02_00475 PF00106 short chain dehydrogenase DDE02_00480 PF01554 MatE DDE02_00485 PF00155 Aminotransferase class I and II DDE02_00490 PF04286 Protein of unknown function (DUF445) DDE02_00505 PF04262 Glutamate-cysteine ligase DDE02_00510 PF02600 Disulfide bond formation protein DsbB DDE02_00515 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DDE02_00515 PF13296 Putative type VI secretion system Rhs element Vgr DDE02_00515 PF04717 Type VI secretion system, phage-baseplate injector DDE02_00550 PF05728 Uncharacterised protein family (UPF0227) DDE02_00555 PF00204 DNA gyrase B DDE02_00555 PF00986 DNA gyrase B subunit, carboxyl terminus DDE02_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_00555 PF01751 Toprim domain DDE02_00560 PF04115 Ureidoglycolate lyase DDE02_00565 PF03561 Allantoicase repeat DDE02_00570 PF01494 FAD binding domain DDE02_00580 PF00860 Permease family DDE02_00585 PF00576 HIUase/Transthyretin family DDE02_00615 PF11412 Disulphide bond corrector protein DsbC DDE02_00615 PF02683 Cytochrome C biogenesis protein transmembrane region DDE02_00620 PF07694 5TMR of 5TMR-LYT DDE02_00620 PF00990 Diguanylate cyclase, GGDEF domain DDE02_00625 PF07859 alpha/beta hydrolase fold DDE02_00635 PF03960 ArsC family DDE02_00640 PF03372 Endonuclease/Exonuclease/phosphatase family DDE02_00645 PF00156 Phosphoribosyl transferase domain DDE02_00650 PF00593 TonB dependent receptor DDE02_00650 PF07715 TonB-dependent Receptor Plug Domain DDE02_00660 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DDE02_00660 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DDE02_00665 PF04101 Glycosyltransferase family 28 C-terminal domain DDE02_00665 PF03033 Glycosyltransferase family 28 N-terminal domain DDE02_00670 PF01225 Mur ligase family, catalytic domain DDE02_00670 PF02875 Mur ligase family, glutamate ligase domain DDE02_00670 PF08245 Mur ligase middle domain DDE02_00675 PF07478 D-ala D-ala ligase C-terminus DDE02_00675 PF01820 D-ala D-ala ligase N-terminus DDE02_00680 PF08478 POTRA domain, FtsQ-type DDE02_00680 PF03799 Cell division protein FtsQ DDE02_00685 PF02491 SHS2 domain inserted in FTSA DDE02_00690 PF00091 Tubulin/FtsZ family, GTPase domain DDE02_00690 PF12327 FtsZ family, C-terminal domain DDE02_00695 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DDE02_00705 PF01551 Peptidase family M23 DDE02_00710 PF17831 Pyruvate dehydrogenase E1 component middle domain DDE02_00710 PF00456 Transketolase, thiamine diphosphate binding domain DDE02_00715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDE02_00715 PF00364 Biotin-requiring enzyme DDE02_00715 PF02817 e3 binding domain DDE02_00725 PF01169 Uncharacterized protein family UPF0016 DDE02_00730 PF07715 TonB-dependent Receptor Plug Domain DDE02_00730 PF00593 TonB dependent receptor DDE02_00735 PF01613 Flavin reductase like domain DDE02_00735 PF00258 Flavodoxin DDE02_00740 PF00571 CBS domain DDE02_00740 PF00478 IMP dehydrogenase / GMP reductase domain DDE02_00745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDE02_00745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDE02_00745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDE02_00745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDE02_00750 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DDE02_00750 PF01243 Pyridoxamine 5'-phosphate oxidase DDE02_00755 PF01368 DHH family DDE02_00755 PF02272 DHHA1 domain DDE02_00755 PF17768 RecJ OB domain DDE02_00775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_00780 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DDE02_00785 PF04452 RNA methyltransferase DDE02_00790 PF05552 Conserved TM helix DDE02_00790 PF00924 Mechanosensitive ion channel DDE02_00800 PF13193 AMP-binding enzyme C-terminal domain DDE02_00800 PF16177 Acetyl-coenzyme A synthetase N-terminus DDE02_00800 PF00501 AMP-binding enzyme DDE02_00805 PF00857 Isochorismatase family DDE02_00810 PF01037 Lrp/AsnC ligand binding domain DDE02_00815 PF00296 Luciferase-like monooxygenase DDE02_00820 PF03358 NADPH-dependent FMN reductase DDE02_00825 PF00072 Response regulator receiver domain DDE02_00825 PF00196 Bacterial regulatory proteins, luxR family DDE02_00835 PF00672 HAMP domain DDE02_00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_00835 PF00512 His Kinase A (phospho-acceptor) domain DDE02_00835 PF01627 Hpt domain DDE02_00835 PF00072 Response regulator receiver domain DDE02_00840 PF04341 Protein of unknown function, DUF485 DDE02_00845 PF00474 Sodium:solute symporter family DDE02_00855 PF02028 BCCT, betaine/carnitine/choline family transporter DDE02_00865 PF00990 Diguanylate cyclase, GGDEF domain DDE02_00875 PF17760 UvrA interaction domain DDE02_00875 PF17755 UvrA DNA-binding domain DDE02_00880 PF16925 Tetracyclin repressor-like, C-terminal domain DDE02_00880 PF00440 Bacterial regulatory proteins, tetR family DDE02_00885 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_00885 PF00107 Zinc-binding dehydrogenase DDE02_00895 PF06942 GlpM protein DDE02_00900 PF00106 short chain dehydrogenase DDE02_00905 PF09278 MerR, DNA binding DDE02_00905 PF00376 MerR family regulatory protein DDE02_00910 PF02581 Thiamine monophosphate synthase DDE02_00910 PF03070 TENA/THI-4/PQQC family DDE02_00910 PF08543 Phosphomethylpyrimidine kinase DDE02_00920 PF07690 Major Facilitator Superfamily DDE02_00925 PF00436 Single-strand binding protein family DDE02_00935 PF03591 AzlC protein DDE02_00945 PF00324 Amino acid permease DDE02_00950 PF00155 Aminotransferase class I and II DDE02_00950 PF00392 Bacterial regulatory proteins, gntR family DDE02_00955 PF00202 Aminotransferase class-III DDE02_00960 PF00171 Aldehyde dehydrogenase family DDE02_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_00970 PF00857 Isochorismatase family DDE02_00975 PF05726 Pirin C-terminal cupin domain DDE02_00975 PF02678 Pirin DDE02_00980 PF01593 Flavin containing amine oxidoreductase DDE02_01050 PF17961 Bacterial Ig domain DDE02_01050 PF00746 LPXTG cell wall anchor motif DDE02_01050 PF17210 SdrD B-like domain DDE02_01050 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DDE02_01050 PF04650 YSIRK type signal peptide DDE02_01065 PF07690 Major Facilitator Superfamily DDE02_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_01070 PF03466 LysR substrate binding domain DDE02_01090 PF00248 Aldo/keto reductase family DDE02_01095 PF02311 AraC-like ligand binding domain DDE02_01095 PF12833 Helix-turn-helix domain DDE02_01135 PF01638 HxlR-like helix-turn-helix DDE02_01145 PF02525 Flavodoxin-like fold DDE02_01160 PF12833 Helix-turn-helix domain DDE02_01170 PF02705 K+ potassium transporter DDE02_01200 PF00230 Major intrinsic protein DDE02_01215 PF00977 Histidine biosynthesis protein DDE02_01220 PF01636 Phosphotransferase enzyme family DDE02_01235 PF00892 EamA-like transporter family DDE02_01245 PF00977 Histidine biosynthesis protein DDE02_01260 PF00117 Glutamine amidotransferase class-I DDE02_01265 PF00475 Imidazoleglycerol-phosphate dehydratase DDE02_01285 PF00583 Acetyltransferase (GNAT) family DDE02_01290 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DDE02_01290 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DDE02_01300 PF00672 HAMP domain DDE02_01300 PF00512 His Kinase A (phospho-acceptor) domain DDE02_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_01305 PF00486 Transcriptional regulatory protein, C terminal DDE02_01305 PF00072 Response regulator receiver domain DDE02_01310 PF17674 HHH domain DDE02_01310 PF00575 S1 RNA binding domain DDE02_01310 PF09371 Tex-like protein N-terminal domain DDE02_01310 PF16921 Tex protein YqgF-like domain DDE02_01315 PF01740 STAS domain DDE02_01315 PF00916 Sulfate permease family DDE02_01320 PF00106 short chain dehydrogenase DDE02_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme DDE02_01330 PF12848 ABC transporter DDE02_01330 PF00005 ABC transporter DDE02_01355 PF04191 Phospholipid methyltransferase DDE02_01375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_01375 PF00529 HlyD membrane-fusion protein of T1SS DDE02_01380 PF00873 AcrB/AcrD/AcrF family DDE02_01385 PF01545 Cation efflux family DDE02_01490 PF13356 Arm DNA-binding domain DDE02_01490 PF00589 Phage integrase family DDE02_01510 PF00324 Amino acid permease DDE02_01525 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDE02_01540 PF01795 MraW methylase family DDE02_01550 PF03717 Penicillin-binding Protein dimerisation domain DDE02_01550 PF00905 Penicillin binding protein transpeptidase domain DDE02_01555 PF01225 Mur ligase family, catalytic domain DDE02_01555 PF08245 Mur ligase middle domain DDE02_01555 PF02875 Mur ligase family, glutamate ligase domain DDE02_01560 PF08245 Mur ligase middle domain DDE02_01560 PF02875 Mur ligase family, glutamate ligase domain DDE02_01560 PF01225 Mur ligase family, catalytic domain DDE02_01565 PF00953 Glycosyl transferase family 4 DDE02_01575 PF13847 Methyltransferase domain DDE02_01580 PF00905 Penicillin binding protein transpeptidase domain DDE02_01580 PF00912 Transglycosylase DDE02_01580 PF17092 Penicillin-binding protein OB-like domain DDE02_01585 PF11104 Type IV pilus assembly protein PilM; DDE02_01590 PF05137 Fimbrial assembly protein (PilN) DDE02_01595 PF04350 Pilus assembly protein, PilO DDE02_01605 PF11741 AMIN domain DDE02_01605 PF00263 Bacterial type II and III secretion system protein DDE02_01605 PF07660 Secretin and TonB N terminus short domain DDE02_01605 PF03958 Bacterial type II/III secretion system short domain DDE02_01610 PF01202 Shikimate kinase DDE02_01615 PF01761 3-dehydroquinate synthase DDE02_01625 PF01493 GXGXG motif DDE02_01625 PF01645 Conserved region in glutamate synthase DDE02_01625 PF04898 Glutamate synthase central domain DDE02_01625 PF00310 Glutamine amidotransferases class-II DDE02_01630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DDE02_01630 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_01640 PF04011 LemA family DDE02_01645 PF04536 TPM domain DDE02_01655 PF00114 Pilin (bacterial filament) DDE02_01655 PF07963 Prokaryotic N-terminal methylation motif DDE02_01665 PF11846 Virulence factor membrane-bound polymerase, C-terminal DDE02_01665 PF04932 O-Antigen ligase DDE02_01665 PF15864 Protein glycosylation ligase DDE02_01670 PF00210 Ferritin-like domain DDE02_01675 PF04324 BFD-like [2Fe-2S] binding domain DDE02_01685 PF01042 Endoribonuclease L-PSP DDE02_01690 PF02824 TGS domain DDE02_01690 PF13291 ACT domain DDE02_01690 PF04607 Region found in RelA / SpoT proteins DDE02_01700 PF01192 RNA polymerase Rpb6 DDE02_01705 PF00625 Guanylate kinase DDE02_01710 PF02401 LytB protein DDE02_01750 PF00886 Ribosomal protein S16 DDE02_01755 PF05239 PRC-barrel domain DDE02_01755 PF01782 RimM N-terminal domain DDE02_01760 PF01746 tRNA (Guanine-1)-methyltransferase DDE02_01765 PF01245 Ribosomal protein L19 DDE02_01770 PF00561 alpha/beta hydrolase fold DDE02_01775 PF03280 Proteobacterial lipase chaperone protein DDE02_01780 PF01509 TruB family pseudouridylate synthase (N terminal domain) DDE02_01780 PF16198 tRNA pseudouridylate synthase B C-terminal domain DDE02_01780 PF09157 Pseudouridine synthase II TruB, C-terminal DDE02_01785 PF01925 Sulfite exporter TauE/SafE DDE02_01795 PF00892 EamA-like transporter family DDE02_01800 PF00892 EamA-like transporter family DDE02_01805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE02_01805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDE02_01810 PF01565 FAD binding domain DDE02_01810 PF02913 FAD linked oxidases, C-terminal domain DDE02_01820 PF03992 Antibiotic biosynthesis monooxygenase DDE02_01825 PF02525 Flavodoxin-like fold DDE02_01835 PF07690 Major Facilitator Superfamily DDE02_01840 PF12805 FUSC-like inner membrane protein yccS DDE02_01845 PF00080 Copper/zinc superoxide dismutase (SODC) DDE02_01850 PF01594 AI-2E family transporter DDE02_01855 PF13614 AAA domain DDE02_01875 PF08241 Methyltransferase domain DDE02_01885 PF00324 Amino acid permease DDE02_01890 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DDE02_01890 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDE02_01895 PF00202 Aminotransferase class-III DDE02_01900 PF04958 Arginine N-succinyltransferase beta subunit DDE02_01905 PF00171 Aldehyde dehydrogenase family DDE02_01910 PF04996 Succinylarginine dihydrolase DDE02_01915 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DDE02_01930 PF00082 Subtilase family DDE02_01930 PF05922 Peptidase inhibitor I9 DDE02_01945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_01945 PF03466 LysR substrate binding domain DDE02_01950 PF00892 EamA-like transporter family DDE02_01960 PF00672 HAMP domain DDE02_01960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_01960 PF18698 Histidine kinase sensor domain DDE02_01960 PF00512 His Kinase A (phospho-acceptor) domain DDE02_01960 PF00989 PAS fold DDE02_01980 PF05746 DALR anticodon binding domain DDE02_01980 PF02092 Glycyl-tRNA synthetase beta subunit DDE02_01985 PF02091 Glycyl-tRNA synthetase alpha subunit DDE02_02010 PF00571 CBS domain DDE02_02010 PF01743 Poly A polymerase head domain DDE02_02015 PF04024 PspC domain DDE02_02025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02025 PF12806 Acetyl-CoA dehydrogenase C-terminal like DDE02_02025 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02035 PF01488 Shikimate / quinate 5-dehydrogenase DDE02_02035 PF08501 Shikimate dehydrogenase substrate binding domain DDE02_02035 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DDE02_02040 PF01218 Coproporphyrinogen III oxidase DDE02_02045 PF00925 GTP cyclohydrolase II DDE02_02050 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDE02_02050 PF02779 Transketolase, pyrimidine binding domain DDE02_02050 PF02780 Transketolase, C-terminal domain DDE02_02055 PF00459 Inositol monophosphatase family DDE02_02060 PF00271 Helicase conserved C-terminal domain DDE02_02060 PF12343 Cold shock protein DEAD box A DDE02_02060 PF03880 DbpA RNA binding domain DDE02_02060 PF00270 DEAD/DEAH box helicase DDE02_02070 PF00005 ABC transporter DDE02_02075 PF02405 Permease MlaE DDE02_02085 PF05494 MlaC protein DDE02_02095 PF01544 CorA-like Mg2+ transporter protein DDE02_02100 PF03641 Possible lysine decarboxylase DDE02_02105 PF00293 NUDIX domain DDE02_02110 PF00156 Phosphoribosyl transferase domain DDE02_02115 PF00270 DEAD/DEAH box helicase DDE02_02115 PF00271 Helicase conserved C-terminal domain DDE02_02115 PF17191 RecG wedge domain DDE02_02130 PF01553 Acyltransferase DDE02_02140 PF00375 Sodium:dicarboxylate symporter family DDE02_02150 PF01926 50S ribosome-binding GTPase DDE02_02155 PF02082 Transcriptional regulator DDE02_02160 PF00970 Oxidoreductase FAD-binding domain DDE02_02160 PF00042 Globin DDE02_02160 PF00175 Oxidoreductase NAD-binding domain DDE02_02170 PF05872 Bacterial protein of unknown function (DUF853) DDE02_02175 PF01053 Cys/Met metabolism PLP-dependent enzyme DDE02_02185 PF00338 Ribosomal protein S10p/S20e DDE02_02190 PF00297 Ribosomal protein L3 DDE02_02195 PF00573 Ribosomal protein L4/L1 family DDE02_02200 PF00276 Ribosomal protein L23 DDE02_02205 PF03947 Ribosomal Proteins L2, C-terminal domain DDE02_02205 PF00181 Ribosomal Proteins L2, RNA binding domain DDE02_02210 PF00203 Ribosomal protein S19 DDE02_02215 PF00237 Ribosomal protein L22p/L17e DDE02_02220 PF07650 KH domain DDE02_02220 PF00189 Ribosomal protein S3, C-terminal domain DDE02_02225 PF00252 Ribosomal protein L16p/L10e DDE02_02230 PF00831 Ribosomal L29 protein DDE02_02235 PF00366 Ribosomal protein S17 DDE02_02240 PF00238 Ribosomal protein L14p/L23e DDE02_02245 PF00467 KOW motif DDE02_02245 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DDE02_02250 PF00281 Ribosomal protein L5 DDE02_02250 PF00673 ribosomal L5P family C-terminus DDE02_02255 PF00253 Ribosomal protein S14p/S29e DDE02_02260 PF00410 Ribosomal protein S8 DDE02_02265 PF00347 Ribosomal protein L6 DDE02_02270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DDE02_02275 PF00333 Ribosomal protein S5, N-terminal domain DDE02_02275 PF03719 Ribosomal protein S5, C-terminal domain DDE02_02280 PF00327 Ribosomal protein L30p/L7e DDE02_02285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DDE02_02290 PF00344 SecY translocase DDE02_02295 PF00444 Ribosomal protein L36 DDE02_02300 PF00416 Ribosomal protein S13/S18 DDE02_02305 PF00411 Ribosomal protein S11 DDE02_02310 PF01479 S4 domain DDE02_02310 PF00163 Ribosomal protein S4/S9 N-terminal domain DDE02_02315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DDE02_02315 PF01000 RNA polymerase Rpb3/RpoA insert domain DDE02_02315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DDE02_02320 PF01196 Ribosomal protein L17 DDE02_02325 PF00743 Flavin-binding monooxygenase-like DDE02_02330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02330 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02335 PF03937 Flavinator of succinate dehydrogenase DDE02_02365 PF09526 Probable metal-binding protein (DUF2387) DDE02_02370 PF01432 Peptidase family M3 DDE02_02375 PF08206 Ribonuclease B OB domain DDE02_02375 PF00773 RNB domain DDE02_02375 PF00575 S1 RNA binding domain DDE02_02375 PF17876 Cold shock domain DDE02_02375 PF08461 Ribonuclease R winged-helix domain DDE02_02425 PF01557 Fumarylacetoacetate (FAA) hydrolase family DDE02_02430 PF03631 Virulence factor BrkB DDE02_02435 PF03358 NADPH-dependent FMN reductase DDE02_02460 PF02130 Uncharacterized protein family UPF0054 DDE02_02465 PF02562 PhoH-like protein DDE02_02470 PF04055 Radical SAM superfamily DDE02_02470 PF00919 Uncharacterized protein family UPF0004 DDE02_02470 PF01938 TRAM domain DDE02_02475 PF01551 Peptidase family M23 DDE02_02475 PF10145 Phage-related minor tail protein DDE02_02475 PF01464 Transglycosylase SLT domain DDE02_02485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDE02_02485 PF00056 lactate/malate dehydrogenase, NAD binding domain DDE02_02505 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DDE02_02510 PF01066 CDP-alcohol phosphatidyltransferase DDE02_02555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02555 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02560 PF17932 Tetracyclin repressor-like, C-terminal domain DDE02_02560 PF00440 Bacterial regulatory proteins, tetR family DDE02_02575 PF01039 Carboxyl transferase domain DDE02_02580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02580 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02590 PF02785 Biotin carboxylase C-terminal domain DDE02_02590 PF00289 Biotin carboxylase, N-terminal domain DDE02_02590 PF00364 Biotin-requiring enzyme DDE02_02590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_02620 PF04386 Stringent starvation protein B DDE02_02625 PF00043 Glutathione S-transferase, C-terminal domain DDE02_02625 PF02798 Glutathione S-transferase, N-terminal domain DDE02_02630 PF00380 Ribosomal protein S9/S16 DDE02_02635 PF00572 Ribosomal protein L13 DDE02_02640 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DDE02_02645 PF00398 Ribosomal RNA adenine dimethylase DDE02_02650 PF00149 Calcineurin-like phosphoesterase DDE02_02670 PF16360 GTP-binding GTPase Middle Region DDE02_02670 PF01926 50S ribosome-binding GTPase DDE02_02670 PF13167 GTP-binding GTPase N-terminal DDE02_02680 PF13091 PLD-like domain DDE02_02685 PF00149 Calcineurin-like phosphoesterase DDE02_02685 PF10518 TAT (twin-arginine translocation) pathway signal sequence DDE02_02690 PF00691 OmpA family DDE02_02690 PF01389 OmpA-like transmembrane domain DDE02_02695 PF17152 Periplasmic sensor domain DDE02_02695 PF00990 Diguanylate cyclase, GGDEF domain DDE02_02700 PF13689 YfiR/HmsC-like DDE02_02740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_02740 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_02750 PF04273 Putative phosphatase (DUF442) DDE02_02750 PF00753 Metallo-beta-lactamase superfamily DDE02_02755 PF00561 alpha/beta hydrolase fold DDE02_02760 PF00085 Thioredoxin DDE02_02765 PF03061 Thioesterase superfamily DDE02_02780 PF04461 Protein of unknown function (DUF520) DDE02_02790 PF01266 FAD dependent oxidoreductase DDE02_02790 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DDE02_02800 PF03795 YCII-related domain DDE02_02805 PF04279 Intracellular septation protein A DDE02_02815 PF01062 Bestrophin, RFP-TM, chloride channel DDE02_02820 PF04002 RadC-like JAB domain DDE02_02825 PF04127 DNA / pantothenate metabolism flavoprotein DDE02_02825 PF02441 Flavoprotein DDE02_02830 PF02355 Protein export membrane protein DDE02_02830 PF07549 SecD/SecF GG Motif DDE02_02835 PF07549 SecD/SecF GG Motif DDE02_02835 PF13721 SecD export protein N-terminal TM region DDE02_02835 PF02355 Protein export membrane protein DDE02_02840 PF02699 Preprotein translocase subunit DDE02_02845 PF01702 Queuine tRNA-ribosyltransferase DDE02_02865 PF02547 Queuosine biosynthesis protein DDE02_02875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_02875 PF00512 His Kinase A (phospho-acceptor) domain DDE02_02875 PF00072 Response regulator receiver domain DDE02_02875 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_02880 PF03710 Glutamate-ammonia ligase adenylyltransferase DDE02_02880 PF08335 GlnD PII-uridylyltransferase DDE02_02885 PF01063 Amino-transferase class IV DDE02_02895 PF01522 Polysaccharide deacetylase DDE02_02910 PF00535 Glycosyl transferase family 2 DDE02_02925 PF02938 GAD domain DDE02_02925 PF00152 tRNA synthetases class II (D, K and N) DDE02_02925 PF01336 OB-fold nucleic acid binding domain DDE02_02935 PF07715 TonB-dependent Receptor Plug Domain DDE02_02935 PF00593 TonB dependent receptor DDE02_02955 PF06146 Phosphate-starvation-inducible E DDE02_02960 PF00043 Glutathione S-transferase, C-terminal domain DDE02_02960 PF02798 Glutathione S-transferase, N-terminal domain DDE02_02965 PF03466 LysR substrate binding domain DDE02_02965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_02970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02970 PF12806 Acetyl-CoA dehydrogenase C-terminal like DDE02_02970 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_02975 PF12806 Acetyl-CoA dehydrogenase C-terminal like DDE02_02975 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_02975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_02985 PF00672 HAMP domain DDE02_02985 PF00512 His Kinase A (phospho-acceptor) domain DDE02_02990 PF00486 Transcriptional regulatory protein, C terminal DDE02_02990 PF00072 Response regulator receiver domain DDE02_03000 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DDE02_03020 PF01923 Cobalamin adenosyltransferase DDE02_03025 PF00593 TonB dependent receptor DDE02_03025 PF07715 TonB-dependent Receptor Plug Domain DDE02_03030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DDE02_03035 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_03060 PF00290 Tryptophan synthase alpha chain DDE02_03065 PF01039 Carboxyl transferase domain DDE02_03070 PF02875 Mur ligase family, glutamate ligase domain DDE02_03070 PF08245 Mur ligase middle domain DDE02_03085 PF00753 Metallo-beta-lactamase superfamily DDE02_03090 PF00578 AhpC/TSA family DDE02_03090 PF10417 C-terminal domain of 1-Cys peroxiredoxin DDE02_03095 PF07516 SecA Wing and Scaffold domain DDE02_03095 PF01043 SecA preprotein cross-linking domain DDE02_03095 PF07517 SecA DEAD-like domain DDE02_03095 PF02810 SEC-C motif DDE02_03105 PF00083 Sugar (and other) transporter DDE02_03105 PF07690 Major Facilitator Superfamily DDE02_03110 PF03006 Haemolysin-III related DDE02_03120 PF13673 Acetyltransferase (GNAT) domain DDE02_03135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDE02_03135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE02_03135 PF00378 Enoyl-CoA hydratase/isomerase DDE02_03140 PF00108 Thiolase, N-terminal domain DDE02_03140 PF02803 Thiolase, C-terminal domain DDE02_03145 PF02311 AraC-like ligand binding domain DDE02_03145 PF12833 Helix-turn-helix domain DDE02_03150 PF02515 CoA-transferase family III DDE02_03155 PF04966 Carbohydrate-selective porin, OprB family DDE02_03160 PF01011 PQQ enzyme repeat DDE02_03165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDE02_03165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDE02_03185 PF00108 Thiolase, N-terminal domain DDE02_03185 PF02803 Thiolase, C-terminal domain DDE02_03190 PF07963 Prokaryotic N-terminal methylation motif DDE02_03190 PF00114 Pilin (bacterial filament) DDE02_03195 PF13505 Outer membrane protein beta-barrel domain DDE02_03195 PF00691 OmpA family DDE02_03200 PF01139 tRNA-splicing ligase RtcB DDE02_03205 PF00324 Amino acid permease DDE02_03210 PF05175 Methyltransferase small domain DDE02_03210 PF08468 Methyltransferase small domain N-terminal DDE02_03215 PF00860 Permease family DDE02_03220 PF03144 Elongation factor Tu domain 2 DDE02_03220 PF00009 Elongation factor Tu GTP binding domain DDE02_03220 PF00679 Elongation factor G C-terminus DDE02_03225 PF01741 Large-conductance mechanosensitive channel, MscL DDE02_03240 PF06827 Zinc finger found in FPG and IleRS DDE02_03240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDE02_03240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDE02_03245 PF02245 Methylpurine-DNA glycosylase (MPG) DDE02_03250 PF07715 TonB-dependent Receptor Plug Domain DDE02_03250 PF00593 TonB dependent receptor DDE02_03255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_03270 PF10411 Disulfide bond isomerase protein N-terminus DDE02_03270 PF13098 Thioredoxin-like domain DDE02_03275 PF01571 Aminomethyltransferase folate-binding domain DDE02_03290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDE02_03290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDE02_03295 PF00860 Permease family DDE02_03300 PF01613 Flavin reductase like domain DDE02_03305 PF01042 Endoribonuclease L-PSP DDE02_03310 PF00857 Isochorismatase family DDE02_03315 PF00296 Luciferase-like monooxygenase DDE02_03320 PF00881 Nitroreductase family DDE02_03325 PF12697 Alpha/beta hydrolase family DDE02_03335 PF03831 PhnA domain DDE02_03335 PF08274 PhnA Zinc-Ribbon DDE02_03340 PF07411 Domain of unknown function (DUF1508) DDE02_03345 PF04073 Aminoacyl-tRNA editing domain DDE02_03345 PF03129 Anticodon binding domain DDE02_03345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDE02_03350 PF00873 AcrB/AcrD/AcrF family DDE02_03365 PF00072 Response regulator receiver domain DDE02_03370 PF00072 Response regulator receiver domain DDE02_03375 PF01584 CheW-like domain DDE02_03380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDE02_03380 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DDE02_03385 PF01584 CheW-like domain DDE02_03385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_03385 PF01627 Hpt domain DDE02_03385 PF00072 Response regulator receiver domain DDE02_03395 PF07687 Peptidase dimerisation domain DDE02_03395 PF01546 Peptidase family M20/M25/M40 DDE02_03400 PF08085 Entericidin EcnA/B family DDE02_03410 PF04304 Protein of unknown function (DUF454) DDE02_03415 PF17969 L,D-transpeptidase C-terminal domain DDE02_03415 PF03734 L,D-transpeptidase catalytic domain DDE02_03455 PF00667 FAD binding domain DDE02_03455 PF00175 Oxidoreductase NAD-binding domain DDE02_03455 PF00258 Flavodoxin DDE02_03465 PF12805 FUSC-like inner membrane protein yccS DDE02_03470 PF07690 Major Facilitator Superfamily DDE02_03475 PF00881 Nitroreductase family DDE02_03495 PF01235 Sodium:alanine symporter family DDE02_03500 PF01734 Patatin-like phospholipase DDE02_03505 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_03505 PF13291 ACT domain DDE02_03510 PF05992 SbmA/BacA-like family DDE02_03515 PF05649 Peptidase family M13 DDE02_03515 PF01431 Peptidase family M13 DDE02_03540 PF02637 GatB domain DDE02_03540 PF02934 GatB/GatE catalytic domain DDE02_03545 PF01425 Amidase DDE02_03550 PF02686 Glu-tRNAGln amidotransferase C subunit DDE02_03560 PF04085 rod shape-determining protein MreC DDE02_03565 PF04093 rod shape-determining protein MreD DDE02_03570 PF02545 Maf-like protein DDE02_03575 PF00575 S1 RNA binding domain DDE02_03575 PF10150 Ribonuclease E/G family DDE02_03585 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DDE02_03585 PF06974 Protein of unknown function (DUF1298) DDE02_03590 PF01507 Phosphoadenosine phosphosulfate reductase family DDE02_03605 PF02525 Flavodoxin-like fold DDE02_03625 PF02673 Bacitracin resistance protein BacA DDE02_03630 PF06719 AraC-type transcriptional regulator N-terminus DDE02_03630 PF12833 Helix-turn-helix domain DDE02_03635 PF14765 Polyketide synthase dehydratase DDE02_03635 PF00550 Phosphopantetheine attachment site DDE02_03635 PF08659 KR domain DDE02_03635 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_03635 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_03635 PF08990 Erythronolide synthase docking DDE02_03635 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_03635 PF00698 Acyl transferase domain DDE02_03635 PF16197 Ketoacyl-synthetase C-terminal extension DDE02_03635 PF09277 Erythronolide synthase, docking DDE02_03640 PF01965 DJ-1/PfpI family DDE02_03710 PF00772 DnaB-like helicase N terminal domain DDE02_03710 PF03796 DnaB-like helicase C terminal domain DDE02_03745 PF13356 Arm DNA-binding domain DDE02_03745 PF00589 Phage integrase family DDE02_03765 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DDE02_03770 PF09297 NADH pyrophosphatase zinc ribbon domain DDE02_03770 PF00293 NUDIX domain DDE02_03775 PF00324 Amino acid permease DDE02_03780 PF04303 PrpF protein DDE02_03785 PF00348 Polyprenyl synthetase DDE02_03790 PF04237 YjbR DDE02_03795 PF01145 SPFH domain / Band 7 family DDE02_03805 PF01734 Patatin-like phospholipase DDE02_03830 PF08019 Phosphoethanolamine transferase EptA/EptB DDE02_03830 PF00884 Sulfatase DDE02_03835 PF00486 Transcriptional regulatory protein, C terminal DDE02_03835 PF00072 Response regulator receiver domain DDE02_03840 PF08521 Two-component sensor kinase N-terminal DDE02_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_03840 PF00512 His Kinase A (phospho-acceptor) domain DDE02_03855 PF00909 Ammonium Transporter Family DDE02_03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_03860 PF03466 LysR substrate binding domain DDE02_03880 PF08264 Anticodon-binding domain of tRNA DDE02_03880 PF00133 tRNA synthetases class I (I, L, M and V) DDE02_03880 PF10458 Valyl tRNA synthetase tRNA binding arm DDE02_03900 PF01906 Putative heavy-metal-binding DDE02_03905 PF01906 Putative heavy-metal-binding DDE02_03910 PF02321 Outer membrane efflux protein DDE02_03915 PF00873 AcrB/AcrD/AcrF family DDE02_03920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_03920 PF00529 HlyD membrane-fusion protein of T1SS DDE02_03925 PF01569 PAP2 superfamily DDE02_03935 PF00348 Polyprenyl synthetase DDE02_03940 PF00829 Ribosomal prokaryotic L21 protein DDE02_03945 PF01016 Ribosomal L27 protein DDE02_03950 PF03548 Outer membrane lipoprotein carrier protein LolA DDE02_03960 PF02403 Seryl-tRNA synthetase N-terminal domain DDE02_03960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDE02_03965 PF10414 Sirohaem synthase dimerisation region DDE02_03965 PF14824 Sirohaem biosynthesis protein central DDE02_03965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDE02_03970 PF00588 SpoU rRNA Methylase family DDE02_04000 PF03358 NADPH-dependent FMN reductase DDE02_04005 PF13520 Amino acid permease DDE02_04010 PF00465 Iron-containing alcohol dehydrogenase DDE02_04020 PF03099 Biotin/lipoate A/B protein ligase family DDE02_04025 PF04359 Protein of unknown function (DUF493) DDE02_04030 PF04546 Sigma-70, non-essential region DDE02_04030 PF03979 Sigma-70 factor, region 1.1 DDE02_04030 PF00140 Sigma-70 factor, region 1.2 DDE02_04030 PF04539 Sigma-70 region 3 DDE02_04030 PF04542 Sigma-70 region 2 DDE02_04030 PF04545 Sigma-70, region 4 DDE02_04050 PF00581 Rhodanese-like domain DDE02_04050 PF17773 UPF0176 acylphosphatase like domain DDE02_04060 PF00285 Citrate synthase, C-terminal domain DDE02_04070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DDE02_04075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DDE02_04080 PF00890 FAD binding domain DDE02_04080 PF02910 Fumarate reductase flavoprotein C-term DDE02_04085 PF13085 2Fe-2S iron-sulfur cluster binding domain DDE02_04100 PF16078 2-oxoglutarate dehydrogenase N-terminus DDE02_04100 PF00676 Dehydrogenase E1 component DDE02_04100 PF02779 Transketolase, pyrimidine binding domain DDE02_04100 PF16870 2-oxoglutarate dehydrogenase C-terminal DDE02_04105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDE02_04105 PF00364 Biotin-requiring enzyme DDE02_04105 PF02817 e3 binding domain DDE02_04110 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_04110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_04115 PF08442 ATP-grasp domain DDE02_04115 PF00549 CoA-ligase DDE02_04120 PF02629 CoA binding domain DDE02_04120 PF00549 CoA-ligase DDE02_04125 PF00579 tRNA synthetases class I (W and Y) DDE02_04130 PF05661 Protein of unknown function (DUF808) DDE02_04135 PF04228 Putative neutral zinc metallopeptidase DDE02_04140 PF00999 Sodium/hydrogen exchanger family DDE02_04165 PF09587 Bacterial capsule synthesis protein PGA_cap DDE02_04175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDE02_04185 PF00582 Universal stress protein family DDE02_04190 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_04195 PF01042 Endoribonuclease L-PSP DDE02_04200 PF00440 Bacterial regulatory proteins, tetR family DDE02_04205 PF01272 Transcription elongation factor, GreA/GreB, C-term DDE02_04205 PF03449 Transcription elongation factor, N-terminal DDE02_04210 PF02142 MGS-like domain DDE02_04210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_04210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDE02_04215 PF00117 Glutamine amidotransferase class-I DDE02_04215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DDE02_04240 PF01985 CRS1 / YhbY (CRM) domain DDE02_04245 PF01728 FtsJ-like methyltransferase DDE02_04250 PF17862 AAA+ lid domain DDE02_04250 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_04250 PF06480 FtsH Extracellular DDE02_04250 PF01434 Peptidase family M41 DDE02_04255 PF00809 Pterin binding enzyme DDE02_04275 PF09423 PhoD-like phosphatase DDE02_04275 PF16655 PhoD-like phosphatase, N-terminal domain DDE02_04290 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DDE02_04290 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DDE02_04310 PF00083 Sugar (and other) transporter DDE02_04315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDE02_04315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDE02_04320 PF01266 FAD dependent oxidoreductase DDE02_04320 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DDE02_04325 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DDE02_04325 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DDE02_04330 PF00781 Diacylglycerol kinase catalytic domain DDE02_04335 PF00149 Calcineurin-like phosphoesterase DDE02_04345 PF00166 Chaperonin 10 Kd subunit DDE02_04350 PF00118 TCP-1/cpn60 chaperonin family DDE02_04355 PF01219 Prokaryotic diacylglycerol kinase DDE02_04365 PF03009 Glycerophosphoryl diester phosphodiesterase family DDE02_04370 PF00873 AcrB/AcrD/AcrF family DDE02_04380 PF01435 Peptidase family M48 DDE02_04385 PF01464 Transglycosylase SLT domain DDE02_04395 PF01171 PP-loop family DDE02_04405 PF01464 Transglycosylase SLT domain DDE02_04405 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_04410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDE02_04410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDE02_04415 PF03449 Transcription elongation factor, N-terminal DDE02_04415 PF01272 Transcription elongation factor, GreA/GreB, C-term DDE02_04425 PF03180 NLPA lipoprotein DDE02_04460 PF00529 HlyD membrane-fusion protein of T1SS DDE02_04460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_04465 PF00873 AcrB/AcrD/AcrF family DDE02_04470 PF00881 Nitroreductase family DDE02_04485 PF02595 Glycerate kinase family DDE02_04490 PF00384 Molybdopterin oxidoreductase DDE02_04495 PF02634 FdhD/NarQ family DDE02_04500 PF06803 Protein of unknown function (DUF1232) DDE02_04505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDE02_04505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE02_04505 PF11890 Domain of unknown function (DUF3410) DDE02_04510 PF00152 tRNA synthetases class II (D, K and N) DDE02_04520 PF18073 Rubredoxin metal binding domain DDE02_04525 PF01235 Sodium:alanine symporter family DDE02_04530 PF00324 Amino acid permease DDE02_04540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDE02_04540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDE02_04545 PF01678 Diaminopimelate epimerase DDE02_04550 PF01810 LysE type translocator DDE02_04555 PF02899 Phage integrase, N-terminal SAM-like domain DDE02_04555 PF00589 Phage integrase family DDE02_04560 PF01012 Electron transfer flavoprotein domain DDE02_04565 PF00766 Electron transfer flavoprotein FAD-binding domain DDE02_04565 PF01012 Electron transfer flavoprotein domain DDE02_04570 PF00521 DNA gyrase/topoisomerase IV, subunit A DDE02_04570 PF03989 DNA gyrase C-terminal domain, beta-propeller DDE02_04585 PF13533 Biotin-lipoyl like DDE02_04595 PF00266 Aminotransferase class-V DDE02_04605 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DDE02_04615 PF02687 FtsX-like permease family DDE02_04615 PF12704 MacB-like periplasmic core domain DDE02_04620 PF00005 ABC transporter DDE02_04625 PF03772 Competence protein DDE02_04625 PF13567 Domain of unknown function (DUF4131) DDE02_04625 PF00753 Metallo-beta-lactamase superfamily DDE02_04635 PF01343 Peptidase family S49 DDE02_04635 PF06965 Na+/H+ antiporter 1 DDE02_04640 PF12697 Alpha/beta hydrolase family DDE02_04645 PF00551 Formyl transferase DDE02_04650 PF00586 AIR synthase related protein, N-terminal domain DDE02_04650 PF02769 AIR synthase related protein, C-terminal domain DDE02_04655 PF01594 AI-2E family transporter DDE02_04660 PF08299 Bacterial dnaA protein helix-turn-helix DDE02_04660 PF11638 DnaA N-terminal domain DDE02_04660 PF00308 Bacterial dnaA protein DDE02_04695 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDE02_04695 PF00588 SpoU rRNA Methylase family DDE02_04700 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DDE02_04710 PF00691 OmpA family DDE02_04715 PF07676 WD40-like Beta Propeller Repeat DDE02_04715 PF04052 TolB amino-terminal domain DDE02_04725 PF02472 Biopolymer transport protein ExbD/TolR DDE02_04730 PF01618 MotA/TolQ/ExbB proton channel family DDE02_04735 PF03061 Thioesterase superfamily DDE02_04740 PF07687 Peptidase dimerisation domain DDE02_04740 PF01546 Peptidase family M20/M25/M40 DDE02_04745 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDE02_04745 PF17864 RuvB AAA lid domain DDE02_04745 PF05491 RuvB C-terminal winged helix domain DDE02_04750 PF07499 RuvA, C-terminal domain DDE02_04750 PF01330 RuvA N terminal domain DDE02_04755 PF01966 HD domain DDE02_04760 PF02769 AIR synthase related protein, C-terminal domain DDE02_04760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DDE02_04760 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DDE02_04765 PF07690 Major Facilitator Superfamily DDE02_04770 PF01784 NIF3 (NGG1p interacting factor 3) DDE02_04775 PF00378 Enoyl-CoA hydratase/isomerase DDE02_04780 PF01467 Cytidylyltransferase-like DDE02_04780 PF00293 NUDIX domain DDE02_04795 PF00578 AhpC/TSA family DDE02_04810 PF06508 Queuosine biosynthesis protein QueC DDE02_04820 PF14602 Hexapeptide repeat of succinyl-transferase DDE02_04820 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_04820 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DDE02_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_04830 PF03466 LysR substrate binding domain DDE02_04835 PF00005 ABC transporter DDE02_04835 PF12857 TOBE-like domain DDE02_04840 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_04845 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_04860 PF01063 Amino-transferase class IV DDE02_04865 PF02618 YceG-like family DDE02_04870 PF02223 Thymidylate kinase DDE02_04880 PF00890 FAD binding domain DDE02_04880 PF02910 Fumarate reductase flavoprotein C-term DDE02_04885 PF13180 PDZ domain DDE02_04895 PF13302 Acetyltransferase (GNAT) domain DDE02_04900 PF00679 Elongation factor G C-terminus DDE02_04900 PF00009 Elongation factor Tu GTP binding domain DDE02_04900 PF03144 Elongation factor Tu domain 2 DDE02_04900 PF06421 GTP-binding protein LepA C-terminus DDE02_04905 PF10502 Signal peptidase, peptidase S26 DDE02_04915 PF00035 Double-stranded RNA binding motif DDE02_04915 PF14622 Ribonuclease-III-like DDE02_04920 PF07650 KH domain DDE02_04920 PF01926 50S ribosome-binding GTPase DDE02_04930 PF11967 Recombination protein O N terminal DDE02_04930 PF02565 Recombination protein O C terminal DDE02_04935 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DDE02_04940 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DDE02_04945 PF00106 short chain dehydrogenase DDE02_04970 PF00892 EamA-like transporter family DDE02_04975 PF00155 Aminotransferase class I and II DDE02_04985 PF17151 Periplasmic sensor domain DDE02_04985 PF00990 Diguanylate cyclase, GGDEF domain DDE02_04995 PF17757 UvrB interaction domain DDE02_04995 PF00271 Helicase conserved C-terminal domain DDE02_04995 PF04851 Type III restriction enzyme, res subunit DDE02_04995 PF02151 UvrB/uvrC motif DDE02_04995 PF12344 Ultra-violet resistance protein B DDE02_05005 PF00892 EamA-like transporter family DDE02_05010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDE02_05010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDE02_05025 PF01926 50S ribosome-binding GTPase DDE02_05025 PF01018 GTP1/OBG DDE02_05030 PF00696 Amino acid kinase family DDE02_05030 PF01472 PUA domain DDE02_05040 PF07759 Protein of unknown function (DUF1615) DDE02_05045 PF01207 Dihydrouridine synthase (Dus) DDE02_05050 PF03060 Nitronate monooxygenase DDE02_05065 PF02350 UDP-N-acetylglucosamine 2-epimerase DDE02_05095 PF00875 DNA photolyase DDE02_05095 PF03441 FAD binding domain of DNA photolyase DDE02_05100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_05110 PF07943 Penicillin-binding protein 5, C-terminal domain DDE02_05110 PF00768 D-alanyl-D-alanine carboxypeptidase DDE02_05120 PF03971 Monomeric isocitrate dehydrogenase DDE02_05125 PF00849 RNA pseudouridylate synthase DDE02_05130 PF00180 Isocitrate/isopropylmalate dehydrogenase DDE02_05140 PF06779 Uncharacterised MFS-type transporter YbfB DDE02_05145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_05145 PF03466 LysR substrate binding domain DDE02_05150 PF00375 Sodium:dicarboxylate symporter family DDE02_05155 PF02567 Phenazine biosynthesis-like protein DDE02_05160 PF05193 Peptidase M16 inactive domain DDE02_05160 PF00675 Insulinase (Peptidase family M16) DDE02_05185 PF02581 Thiamine monophosphate synthase DDE02_05190 PF00202 Aminotransferase class-III DDE02_05200 PF00849 RNA pseudouridylate synthase DDE02_05205 PF12137 RNA polymerase recycling family C-terminal DDE02_05205 PF00176 SNF2 family N-terminal domain DDE02_05205 PF18339 RapA N-terminal Tudor like domain 1 DDE02_05205 PF00271 Helicase conserved C-terminal domain DDE02_05205 PF18337 RapA N-terminal Tudor like domain DDE02_05215 PF00440 Bacterial regulatory proteins, tetR family DDE02_05220 PF00970 Oxidoreductase FAD-binding domain DDE02_05220 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_05220 PF00175 Oxidoreductase NAD-binding domain DDE02_05225 PF00487 Fatty acid desaturase DDE02_05235 PF00202 Aminotransferase class-III DDE02_05240 PF00282 Pyridoxal-dependent decarboxylase conserved domain DDE02_05245 PF00171 Aldehyde dehydrogenase family DDE02_05250 PF01037 Lrp/AsnC ligand binding domain DDE02_05255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDE02_05255 PF00205 Thiamine pyrophosphate enzyme, central domain DDE02_05255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDE02_05260 PF00324 Amino acid permease DDE02_05265 PF12849 PBP superfamily domain DDE02_05270 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_05275 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_05280 PF00005 ABC transporter DDE02_05285 PF01343 Peptidase family S49 DDE02_05285 PF08496 Peptidase family S49 N-terminal DDE02_05300 PF08328 Adenylosuccinate lyase C-terminal DDE02_05300 PF00206 Lyase DDE02_05305 PF04356 Protein of unknown function (DUF489) DDE02_05315 PF13344 Haloacid dehalogenase-like hydrolase DDE02_05315 PF00293 NUDIX domain DDE02_05325 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_05330 PF07943 Penicillin-binding protein 5, C-terminal domain DDE02_05330 PF00768 D-alanyl-D-alanine carboxypeptidase DDE02_05345 PF01975 Survival protein SurE DDE02_05350 PF01476 LysM domain DDE02_05350 PF01551 Peptidase family M23 DDE02_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_05355 PF03466 LysR substrate binding domain DDE02_05360 PF13654 AAA domain DDE02_05360 PF05362 Lon protease (S16) C-terminal proteolytic domain DDE02_05365 PF07690 Major Facilitator Superfamily DDE02_05370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_05375 PF13593 SBF-like CPA transporter family (DUF4137) DDE02_05380 PF01197 Ribosomal protein L31 DDE02_05395 PF04055 Radical SAM superfamily DDE02_05400 PF01132 Elongation factor P (EF-P) OB domain DDE02_05400 PF08207 Elongation factor P (EF-P) KOW-like domain DDE02_05400 PF09285 Elongation factor P, C-terminal DDE02_05405 PF02554 Carbon starvation protein CstA DDE02_05405 PF13722 5TM C-terminal transporter carbon starvation CstA DDE02_05410 PF04328 Selenoprotein, putative DDE02_05420 PF13356 Arm DNA-binding domain DDE02_05420 PF00589 Phage integrase family DDE02_05460 PF03171 2OG-Fe(II) oxygenase superfamily DDE02_05460 PF14226 non-haem dioxygenase in morphine synthesis N-terminal DDE02_05500 PF02678 Pirin DDE02_05500 PF17954 Quercetinase C-terminal cupin domain DDE02_05510 PF00550 Phosphopantetheine attachment site DDE02_05510 PF00501 AMP-binding enzyme DDE02_05510 PF13193 AMP-binding enzyme C-terminal domain DDE02_05510 PF00668 Condensation domain DDE02_05515 PF00975 Thioesterase domain DDE02_05515 PF00550 Phosphopantetheine attachment site DDE02_05515 PF00668 Condensation domain DDE02_05515 PF00501 AMP-binding enzyme DDE02_05515 PF13193 AMP-binding enzyme C-terminal domain DDE02_05520 PF01032 FecCD transport family DDE02_05525 PF01032 FecCD transport family DDE02_05530 PF00005 ABC transporter DDE02_05535 PF01497 Periplasmic binding protein DDE02_05540 PF07715 TonB-dependent Receptor Plug Domain DDE02_05540 PF00593 TonB dependent receptor DDE02_05545 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DDE02_05550 PF00501 AMP-binding enzyme DDE02_05550 PF00668 Condensation domain DDE02_05550 PF00550 Phosphopantetheine attachment site DDE02_05555 PF00501 AMP-binding enzyme DDE02_05555 PF13193 AMP-binding enzyme C-terminal domain DDE02_05560 PF00857 Isochorismatase family DDE02_05560 PF00550 Phosphopantetheine attachment site DDE02_05565 PF00282 Pyridoxal-dependent decarboxylase conserved domain DDE02_05575 PF00005 ABC transporter DDE02_05580 PF00005 ABC transporter DDE02_05585 PF00975 Thioesterase domain DDE02_05590 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DDE02_05590 PF01648 4'-phosphopantetheinyl transferase superfamily DDE02_05595 PF00425 chorismate binding enzyme DDE02_05610 PF01208 Uroporphyrinogen decarboxylase (URO-D) DDE02_05615 PF05675 Protein of unknown function (DUF817) DDE02_05630 PF00144 Beta-lactamase DDE02_05635 PF01227 GTP cyclohydrolase I DDE02_05640 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_05640 PF01799 [2Fe-2S] binding domain DDE02_05645 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DDE02_05645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DDE02_05655 PF01713 Smr domain DDE02_05660 PF00218 Indole-3-glycerol phosphate synthase DDE02_05665 PF02885 Glycosyl transferase family, helical bundle domain DDE02_05665 PF00591 Glycosyl transferase family, a/b domain DDE02_05670 PF07715 TonB-dependent Receptor Plug Domain DDE02_05670 PF00593 TonB dependent receptor DDE02_05675 PF11838 ERAP1-like C-terminal domain DDE02_05675 PF01433 Peptidase family M1 domain DDE02_05680 PF00117 Glutamine amidotransferase class-I DDE02_05730 PF01726 LexA DNA binding domain DDE02_05730 PF00717 Peptidase S24-like DDE02_05735 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DDE02_05830 PF06381 Protein of unknown function (DUF1073) DDE02_05850 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) DDE02_05945 PF00182 Chitinase class I DDE02_05970 PF11799 impB/mucB/samB family C-terminal domain DDE02_05970 PF13438 Domain of unknown function (DUF4113) DDE02_05970 PF00817 impB/mucB/samB family DDE02_05970 PF11798 IMS family HHH motif DDE02_05975 PF00717 Peptidase S24-like DDE02_05990 PF13356 Arm DNA-binding domain DDE02_05990 PF00589 Phage integrase family DDE02_06000 PF00854 POT family DDE02_06005 PF03951 Glutamine synthetase, beta-Grasp domain DDE02_06005 PF00120 Glutamine synthetase, catalytic domain DDE02_06010 PF04345 Chorismate lyase DDE02_06015 PF01040 UbiA prenyltransferase family DDE02_06050 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DDE02_06050 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DDE02_06055 PF01784 NIF3 (NGG1p interacting factor 3) DDE02_06060 PF13180 PDZ domain DDE02_06065 PF01743 Poly A polymerase head domain DDE02_06065 PF12627 Probable RNA and SrmB- binding site of polymerase A DDE02_06070 PF00390 Malic enzyme, N-terminal domain DDE02_06070 PF03949 Malic enzyme, NAD binding domain DDE02_06070 PF01515 Phosphate acetyl/butaryl transferase DDE02_06075 PF00563 EAL domain DDE02_06075 PF00990 Diguanylate cyclase, GGDEF domain DDE02_06075 PF03707 Bacterial signalling protein N terminal repeat DDE02_06080 PF04452 RNA methyltransferase DDE02_06085 PF02219 Methylenetetrahydrofolate reductase DDE02_06090 PF05221 S-adenosyl-L-homocysteine hydrolase DDE02_06090 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DDE02_06105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_06105 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_06105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_06105 PF09317 Domain of unknown function (DUF1974) DDE02_06110 PF04055 Radical SAM superfamily DDE02_06115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_06115 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_06125 PF07690 Major Facilitator Superfamily DDE02_06135 PF00557 Metallopeptidase family M24 DDE02_06140 PF00318 Ribosomal protein S2 DDE02_06145 PF00889 Elongation factor TS DDE02_06155 PF12833 Helix-turn-helix domain DDE02_06175 PF05036 Sporulation related domain DDE02_06175 PF03330 Lytic transglycolase DDE02_06180 PF13406 Transglycosylase SLT domain DDE02_06185 PF01098 Cell cycle protein DDE02_06195 PF14489 QueF-like protein DDE02_06195 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DDE02_06200 PF01061 ABC-2 type transporter DDE02_06205 PF00005 ABC transporter DDE02_06235 PF00464 Serine hydroxymethyltransferase DDE02_06240 PF02321 Outer membrane efflux protein DDE02_06245 PF00873 AcrB/AcrD/AcrF family DDE02_06250 PF13533 Biotin-lipoyl like DDE02_06255 PF03466 LysR substrate binding domain DDE02_06255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_06260 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_06265 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_06270 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_06275 PF00005 ABC transporter DDE02_06280 PF00893 Small Multidrug Resistance protein DDE02_06285 PF00037 4Fe-4S binding domain DDE02_06290 PF01136 Peptidase family U32 DDE02_06290 PF16325 Peptidase family U32 C-terminal domain DDE02_06295 PF00155 Aminotransferase class I and II DDE02_06295 PF00392 Bacterial regulatory proteins, gntR family DDE02_06300 PF02567 Phenazine biosynthesis-like protein DDE02_06305 PF00175 Oxidoreductase NAD-binding domain DDE02_06305 PF00970 Oxidoreductase FAD-binding domain DDE02_06310 PF18389 TrmO C-terminal domain DDE02_06310 PF01980 tRNA-methyltransferase O DDE02_06320 PF00437 Type II/IV secretion system protein DDE02_06320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DDE02_06330 PF00072 Response regulator receiver domain DDE02_06330 PF00486 Transcriptional regulatory protein, C terminal DDE02_06335 PF08521 Two-component sensor kinase N-terminal DDE02_06335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_06335 PF00512 His Kinase A (phospho-acceptor) domain DDE02_06345 PF00293 NUDIX domain DDE02_06355 PF00912 Transglycosylase DDE02_06355 PF00905 Penicillin binding protein transpeptidase domain DDE02_06355 PF14814 Bifunctional transglycosylase second domain DDE02_06360 PF01513 ATP-NAD kinase DDE02_06365 PF07023 Protein of unknown function (DUF1315) DDE02_06370 PF00591 Glycosyl transferase family, a/b domain DDE02_06370 PF02885 Glycosyl transferase family, helical bundle domain DDE02_06380 PF00375 Sodium:dicarboxylate symporter family DDE02_06385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_06385 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_06385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_06395 PF00800 Prephenate dehydratase DDE02_06395 PF01817 Chorismate mutase type II DDE02_06395 PF01842 ACT domain DDE02_06400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDE02_06410 PF01546 Peptidase family M20/M25/M40 DDE02_06410 PF07687 Peptidase dimerisation domain DDE02_06415 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain DDE02_06415 PF01137 RNA 3'-terminal phosphate cyclase DDE02_06430 PF01139 tRNA-splicing ligase RtcB DDE02_06435 PF00753 Metallo-beta-lactamase superfamily DDE02_06440 PF00158 Sigma-54 interaction domain DDE02_06440 PF06956 Regulator of RNA terminal phosphate cyclase DDE02_06450 PF03883 Peroxide stress protein YaaA DDE02_06460 PF05690 Thiazole biosynthesis protein ThiG DDE02_06470 PF04241 Protein of unknown function (DUF423) DDE02_06475 PF04545 Sigma-70, region 4 DDE02_06475 PF04542 Sigma-70 region 2 DDE02_06475 PF00140 Sigma-70 factor, region 1.2 DDE02_06485 PF00313 'Cold-shock' DNA-binding domain DDE02_06490 PF00271 Helicase conserved C-terminal domain DDE02_06490 PF00270 DEAD/DEAH box helicase DDE02_06500 PF00881 Nitroreductase family DDE02_06505 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDE02_06505 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDE02_06525 PF01180 Dihydroorotate dehydrogenase DDE02_06530 PF02674 Colicin V production protein DDE02_06535 PF00156 Phosphoribosyl transferase domain DDE02_06550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDE02_06550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE02_06555 PF01435 Peptidase family M48 DDE02_06560 PF09424 Yqey-like protein DDE02_06565 PF01165 Ribosomal protein S21 DDE02_06570 PF00814 Glycoprotease family DDE02_06590 PF03793 PASTA domain DDE02_06590 PF00069 Protein kinase domain DDE02_06615 PF00313 'Cold-shock' DNA-binding domain DDE02_06630 PF00561 alpha/beta hydrolase fold DDE02_06635 PF03616 Sodium/glutamate symporter DDE02_06640 PF00999 Sodium/hydrogen exchanger family DDE02_06640 PF02254 TrkA-N domain DDE02_06655 PF00440 Bacterial regulatory proteins, tetR family DDE02_06660 PF00155 Aminotransferase class I and II DDE02_06665 PF06826 Predicted Permease Membrane Region DDE02_06665 PF02080 TrkA-C domain DDE02_06675 PF04403 Paraquat-inducible protein A DDE02_06680 PF02470 MlaD protein DDE02_06690 PF00576 HIUase/Transthyretin family DDE02_06700 PF00486 Transcriptional regulatory protein, C terminal DDE02_06700 PF00072 Response regulator receiver domain DDE02_06705 PF00512 His Kinase A (phospho-acceptor) domain DDE02_06705 PF00672 HAMP domain DDE02_06705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_06745 PF08521 Two-component sensor kinase N-terminal DDE02_06745 PF00512 His Kinase A (phospho-acceptor) domain DDE02_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_06750 PF00486 Transcriptional regulatory protein, C terminal DDE02_06750 PF00072 Response regulator receiver domain DDE02_06765 PF01177 Asp/Glu/Hydantoin racemase DDE02_06775 PF07995 Glucose / Sorbosone dehydrogenase DDE02_06795 PF00375 Sodium:dicarboxylate symporter family DDE02_06805 PF16123 Hydroxyacylglutathione hydrolase C-terminus DDE02_06805 PF00753 Metallo-beta-lactamase superfamily DDE02_06810 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_06815 PF09383 NIL domain DDE02_06815 PF00005 ABC transporter DDE02_06820 PF03180 NLPA lipoprotein DDE02_06825 PF02843 Phosphoribosylglycinamide synthetase, C domain DDE02_06825 PF02844 Phosphoribosylglycinamide synthetase, N domain DDE02_06825 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DDE02_06830 PF01808 AICARFT/IMPCHase bienzyme DDE02_06830 PF02142 MGS-like domain DDE02_06835 PF02954 Bacterial regulatory protein, Fis family DDE02_06855 PF13932 GidA associated domain DDE02_06855 PF01134 Glucose inhibited division protein A DDE02_06865 PF14403 Circularly permuted ATP-grasp type 2 DDE02_06875 PF01841 Transglutaminase-like superfamily DDE02_06875 PF08379 Bacterial transglutaminase-like N-terminal region DDE02_06885 PF01168 Alanine racemase, N-terminal domain DDE02_06885 PF00842 Alanine racemase, C-terminal domain DDE02_06890 PF03796 DnaB-like helicase C terminal domain DDE02_06890 PF00772 DnaB-like helicase N terminal domain DDE02_06895 PF03948 Ribosomal protein L9, C-terminal domain DDE02_06895 PF01281 Ribosomal protein L9, N-terminal domain DDE02_06900 PF01084 Ribosomal protein S18 DDE02_06905 PF01250 Ribosomal protein S6 DDE02_06910 PF01040 UbiA prenyltransferase family DDE02_06915 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DDE02_06920 PF00510 Cytochrome c oxidase subunit III DDE02_06925 PF00115 Cytochrome C and Quinol oxidase polypeptide I DDE02_06930 PF06481 COX Aromatic Rich Motif DDE02_06930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DDE02_06940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DDE02_06940 PF02896 PEP-utilising enzyme, TIM barrel domain DDE02_06940 PF00391 PEP-utilising enzyme, mobile domain DDE02_06945 PF03618 Kinase/pyrophosphorylase DDE02_06955 PF14883 Hypothetical glycosyl hydrolase family 13 DDE02_06955 PF01522 Polysaccharide deacetylase DDE02_06960 PF00535 Glycosyl transferase family 2 DDE02_06965 PF13994 PgaD-like protein DDE02_06975 PF00296 Luciferase-like monooxygenase DDE02_06990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_06990 PF03466 LysR substrate binding domain DDE02_07000 PF03462 PCRF domain DDE02_07000 PF00472 RF-1 domain DDE02_07005 PF13847 Methyltransferase domain DDE02_07005 PF17827 PrmC N-terminal domain DDE02_07010 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_07015 PF09084 NMT1/THI5 like DDE02_07025 PF00106 short chain dehydrogenase DDE02_07030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_07030 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_07030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_07035 PF01613 Flavin reductase like domain DDE02_07040 PF00899 ThiF family DDE02_07045 PF03109 ABC1 family DDE02_07050 PF02152 Dihydroneopterin aldolase DDE02_07060 PF03814 Potassium-transporting ATPase A subunit DDE02_07070 PF02669 K+-transporting ATPase, c chain DDE02_07075 PF02702 Osmosensitive K+ channel His kinase sensor domain DDE02_07075 PF13493 Domain of unknown function (DUF4118) DDE02_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_07075 PF00512 His Kinase A (phospho-acceptor) domain DDE02_07080 PF00486 Transcriptional regulatory protein, C terminal DDE02_07080 PF00072 Response regulator receiver domain DDE02_07085 PF00120 Glutamine synthetase, catalytic domain DDE02_07095 PF03232 Ubiquinone biosynthesis protein COQ7 DDE02_07100 PF07690 Major Facilitator Superfamily DDE02_07105 PF17243 POTRA domain TamA domain 1 DDE02_07105 PF07244 Surface antigen variable number repeat DDE02_07105 PF01103 Surface antigen DDE02_07130 PF11791 Aconitate B N-terminal domain DDE02_07130 PF00330 Aconitase family (aconitate hydratase) DDE02_07130 PF06434 Aconitate hydratase 2 N-terminus DDE02_07140 PF00027 Cyclic nucleotide-binding domain DDE02_07140 PF00520 Ion transport protein DDE02_07145 PF07690 Major Facilitator Superfamily DDE02_07190 PF00216 Bacterial DNA-binding protein DDE02_07215 PF13401 AAA domain DDE02_07215 PF01471 Putative peptidoglycan binding domain DDE02_07240 PF10502 Signal peptidase, peptidase S26 DDE02_07275 PF03237 Terminase-like family DDE02_07295 PF04233 Phage Mu protein F like protein DDE02_07400 PF03466 LysR substrate binding domain DDE02_07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_07405 PF04284 Protein of unknown function (DUF441) DDE02_07415 PF00849 RNA pseudouridylate synthase DDE02_07415 PF01479 S4 domain DDE02_07430 PF00849 RNA pseudouridylate synthase DDE02_07430 PF01479 S4 domain DDE02_07435 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DDE02_07440 PF01119 DNA mismatch repair protein, C-terminal domain DDE02_07440 PF08676 MutL C terminal dimerisation domain DDE02_07450 PF17209 Hfq protein DDE02_07460 PF00881 Nitroreductase family DDE02_07470 PF00149 Calcineurin-like phosphoesterase DDE02_07475 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDE02_07480 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DDE02_07480 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDE02_07485 PF00117 Glutamine amidotransferase class-I DDE02_07485 PF00958 GMP synthase C terminal domain DDE02_07485 PF02540 NAD synthase DDE02_07490 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DDE02_07495 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DDE02_07500 PF13520 Amino acid permease DDE02_07505 PF00171 Aldehyde dehydrogenase family DDE02_07520 PF00465 Iron-containing alcohol dehydrogenase DDE02_07525 PF14493 Helix-turn-helix domain DDE02_07525 PF05970 PIF1-like helicase DDE02_07535 PF02110 Hydroxyethylthiazole kinase family DDE02_07550 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DDE02_07550 PF11940 Domain of unknown function (DUF3458) Ig-like fold DDE02_07550 PF01433 Peptidase family M1 domain DDE02_07565 PF13954 PapC N-terminal domain DDE02_07565 PF00577 Outer membrane usher protein DDE02_07565 PF13953 PapC C-terminal domain DDE02_07590 PF01817 Chorismate mutase type II DDE02_07615 PF07715 TonB-dependent Receptor Plug Domain DDE02_07615 PF07660 Secretin and TonB N terminus short domain DDE02_07615 PF00593 TonB dependent receptor DDE02_07620 PF07715 TonB-dependent Receptor Plug Domain DDE02_07620 PF00593 TonB dependent receptor DDE02_07625 PF13640 2OG-Fe(II) oxygenase superfamily DDE02_07625 PF18331 PKHD-type hydroxylase C-terminal domain DDE02_07640 PF00117 Glutamine amidotransferase class-I DDE02_07675 PF00959 Phage lysozyme DDE02_07700 PF03466 LysR substrate binding domain DDE02_07700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_07730 PF04151 Bacterial pre-peptidase C-terminal domain DDE02_07735 PF00005 ABC transporter DDE02_07735 PF12848 ABC transporter DDE02_07740 PF00582 Universal stress protein family DDE02_07750 PF13737 Transposase DDE domain DDE02_07770 PF03594 Benzoate membrane transport protein DDE02_07775 PF01037 Lrp/AsnC ligand binding domain DDE02_07780 PF01810 LysE type translocator DDE02_07785 PF00923 Transaldolase/Fructose-6-phosphate aldolase DDE02_07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_07790 PF03466 LysR substrate binding domain DDE02_07800 PF02803 Thiolase, C-terminal domain DDE02_07800 PF00108 Thiolase, N-terminal domain DDE02_07810 PF01575 MaoC like domain DDE02_07815 PF00144 Beta-lactamase DDE02_07825 PF07690 Major Facilitator Superfamily DDE02_07840 PF12170 DNA polymerase III tau subunit V interacting with alpha DDE02_07840 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DDE02_07840 PF12169 DNA polymerase III subunits gamma and tau domain III DDE02_07845 PF04185 Phosphoesterase family DDE02_07845 PF05506 Domain of unknown function (DUF756) DDE02_07850 PF03061 Thioesterase superfamily DDE02_07855 PF00465 Iron-containing alcohol dehydrogenase DDE02_07870 PF00857 Isochorismatase family DDE02_07880 PF01638 HxlR-like helix-turn-helix DDE02_07890 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDE02_07895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DDE02_07895 PF01565 FAD binding domain DDE02_07935 PF13953 PapC C-terminal domain DDE02_07935 PF13954 PapC N-terminal domain DDE02_07935 PF00577 Outer membrane usher protein DDE02_07945 PF12832 MFS_1 like family DDE02_07955 PF00289 Biotin carboxylase, N-terminal domain DDE02_07955 PF02785 Biotin carboxylase C-terminal domain DDE02_07955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_07960 PF00364 Biotin-requiring enzyme DDE02_07965 PF01220 Dehydroquinase class II DDE02_07970 PF11799 impB/mucB/samB family C-terminal domain DDE02_07970 PF00817 impB/mucB/samB family DDE02_07970 PF13438 Domain of unknown function (DUF4113) DDE02_07975 PF07715 TonB-dependent Receptor Plug Domain DDE02_07975 PF00593 TonB dependent receptor DDE02_07980 PF03328 HpcH/HpaI aldolase/citrate lyase family DDE02_07985 PF04183 IucA / IucC family DDE02_07985 PF06276 Ferric iron reductase FhuF-like transporter DDE02_07990 PF07690 Major Facilitator Superfamily DDE02_07995 PF04183 IucA / IucC family DDE02_07995 PF06276 Ferric iron reductase FhuF-like transporter DDE02_08000 PF02423 Ornithine cyclodeaminase/mu-crystallin family DDE02_08005 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_08010 PF00005 ABC transporter DDE02_08025 PF13806 Rieske-like [2Fe-2S] domain DDE02_08025 PF18267 Rubredoxin NAD+ reductase C-terminal domain DDE02_08025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDE02_08025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDE02_08025 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_08025 PF04324 BFD-like [2Fe-2S] binding domain DDE02_08030 PF18267 Rubredoxin NAD+ reductase C-terminal domain DDE02_08030 PF04324 BFD-like [2Fe-2S] binding domain DDE02_08030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDE02_08030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDE02_08030 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_08035 PF04324 BFD-like [2Fe-2S] binding domain DDE02_08035 PF00384 Molybdopterin oxidoreductase DDE02_08035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDE02_08035 PF01568 Molydopterin dinucleotide binding domain DDE02_08040 PF12804 MobA-like NTP transferase domain DDE02_08045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDE02_08045 PF00384 Molybdopterin oxidoreductase DDE02_08045 PF01568 Molydopterin dinucleotide binding domain DDE02_08050 PF06463 Molybdenum Cofactor Synthesis C DDE02_08050 PF04055 Radical SAM superfamily DDE02_08060 PF02391 MoaE protein DDE02_08065 PF01967 MoaC family DDE02_08065 PF00994 Probable molybdopterin binding domain DDE02_08070 PF03454 MoeA C-terminal region (domain IV) DDE02_08070 PF03453 MoeA N-terminal region (domain I and II) DDE02_08070 PF00994 Probable molybdopterin binding domain DDE02_08075 PF01638 HxlR-like helix-turn-helix DDE02_08080 PF00155 Aminotransferase class I and II DDE02_08080 PF00392 Bacterial regulatory proteins, gntR family DDE02_08085 PF00892 EamA-like transporter family DDE02_08105 PF02635 DsrE/DsrF-like family DDE02_08110 PF16363 GDP-mannose 4,6 dehydratase DDE02_08115 PF10415 Fumarase C C-terminus DDE02_08115 PF00206 Lyase DDE02_08130 PF00561 alpha/beta hydrolase fold DDE02_08150 PF01266 FAD dependent oxidoreductase DDE02_08160 PF02542 YgbB family DDE02_08170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDE02_08170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDE02_08175 PF00440 Bacterial regulatory proteins, tetR family DDE02_08180 PF00158 Sigma-54 interaction domain DDE02_08180 PF00072 Response regulator receiver domain DDE02_08180 PF02954 Bacterial regulatory protein, Fis family DDE02_08185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_08185 PF00512 His Kinase A (phospho-acceptor) domain DDE02_08185 PF00989 PAS fold DDE02_08195 PF04055 Radical SAM superfamily DDE02_08195 PF18693 TRAM domain DDE02_08195 PF00919 Uncharacterized protein family UPF0004 DDE02_08200 PF00696 Amino acid kinase family DDE02_08205 PF01765 Ribosome recycling factor DDE02_08210 PF01255 Putative undecaprenyl diphosphate synthase DDE02_08220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DDE02_08220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDE02_08220 PF13288 DXP reductoisomerase C-terminal domain DDE02_08225 PF02163 Peptidase family M50 DDE02_08225 PF13180 PDZ domain DDE02_08225 PF17820 PDZ domain DDE02_08230 PF01103 Surface antigen DDE02_08230 PF07244 Surface antigen variable number repeat DDE02_08240 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DDE02_08240 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_08245 PF07977 FabA-like domain DDE02_08250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DDE02_08250 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_08265 PF02631 RecX family DDE02_08270 PF00154 recA bacterial DNA recombination protein DDE02_08275 PF01479 S4 domain DDE02_08280 PF13419 Haloacid dehalogenase-like hydrolase DDE02_08295 PF01037 Lrp/AsnC ligand binding domain DDE02_08300 PF00266 Aminotransferase class-V DDE02_08305 PF00324 Amino acid permease DDE02_08320 PF05922 Peptidase inhibitor I9 DDE02_08320 PF00082 Subtilase family DDE02_08325 PF01740 STAS domain DDE02_08325 PF00916 Sulfate permease family DDE02_08335 PF07995 Glucose / Sorbosone dehydrogenase DDE02_08345 PF00563 EAL domain DDE02_08345 PF00990 Diguanylate cyclase, GGDEF domain DDE02_08345 PF03707 Bacterial signalling protein N terminal repeat DDE02_08360 PF02378 Phosphotransferase system, EIIC DDE02_08360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDE02_08365 PF00294 pfkB family carbohydrate kinase DDE02_08370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDE02_08370 PF02896 PEP-utilising enzyme, TIM barrel domain DDE02_08370 PF00391 PEP-utilising enzyme, mobile domain DDE02_08370 PF05524 PEP-utilising enzyme, N-terminal DDE02_08370 PF00381 PTS HPr component phosphorylation site DDE02_08390 PF03928 Haem-degrading DDE02_08395 PF05525 Branched-chain amino acid transport protein DDE02_08400 PF00557 Metallopeptidase family M24 DDE02_08405 PF03466 LysR substrate binding domain DDE02_08405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_08415 PF00462 Glutaredoxin DDE02_08420 PF00202 Aminotransferase class-III DDE02_08425 PF00571 CBS domain DDE02_08425 PF01380 SIS domain DDE02_08450 PF00448 SRP54-type protein, GTPase domain DDE02_08450 PF02881 SRP54-type protein, helical bundle domain DDE02_08475 PF08173 Membrane bound YbgT-like protein DDE02_08480 PF02322 Cytochrome bd terminal oxidase subunit II DDE02_08485 PF01654 Cytochrome bd terminal oxidase subunit I DDE02_08495 PF07290 Protein of unknown function (DUF1449) DDE02_08505 PF00294 pfkB family carbohydrate kinase DDE02_08510 PF05193 Peptidase M16 inactive domain DDE02_08510 PF00675 Insulinase (Peptidase family M16) DDE02_08510 PF08367 Peptidase M16C associated DDE02_08515 PF02253 Phospholipase A1 DDE02_08520 PF02386 Cation transport protein DDE02_08525 PF02080 TrkA-C domain DDE02_08525 PF02254 TrkA-N domain DDE02_08530 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_08530 PF00585 C-terminal regulatory domain of Threonine dehydratase DDE02_08535 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DDE02_08550 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDE02_08550 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDE02_08560 PF02617 ATP-dependent Clp protease adaptor protein ClpS DDE02_08565 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_08565 PF07724 AAA domain (Cdc48 subfamily) DDE02_08565 PF17871 AAA lid domain DDE02_08565 PF10431 C-terminal, D2-small domain, of ClpB protein DDE02_08565 PF02861 Clp amino terminal domain, pathogenicity island component DDE02_08570 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DDE02_08575 PF00793 DAHP synthetase I family DDE02_08590 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_08590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_08620 PF00117 Glutamine amidotransferase class-I DDE02_08620 PF06418 CTP synthase N-terminus DDE02_08625 PF00793 DAHP synthetase I family DDE02_08630 PF03952 Enolase, N-terminal domain DDE02_08630 PF00113 Enolase, C-terminal TIM barrel domain DDE02_08635 PF04239 Protein of unknown function (DUF421) DDE02_08645 PF00593 TonB dependent receptor DDE02_08645 PF07715 TonB-dependent Receptor Plug Domain DDE02_08650 PF04977 Septum formation initiator DDE02_08655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDE02_08660 PF01144 Coenzyme A transferase DDE02_08665 PF01144 Coenzyme A transferase DDE02_08670 PF02803 Thiolase, C-terminal domain DDE02_08670 PF00108 Thiolase, N-terminal domain DDE02_08675 PF10397 Adenylosuccinate lyase C-terminus DDE02_08675 PF00206 Lyase DDE02_08680 PF00561 alpha/beta hydrolase fold DDE02_08685 PF07690 Major Facilitator Superfamily DDE02_08690 PF02627 Carboxymuconolactone decarboxylase family DDE02_08695 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DDE02_08695 PF00775 Dioxygenase DDE02_08700 PF00775 Dioxygenase DDE02_08705 PF01487 Type I 3-dehydroquinase DDE02_08710 PF05048 Periplasmic copper-binding protein (NosD) DDE02_08715 PF04966 Carbohydrate-selective porin, OprB family DDE02_08720 PF01011 PQQ enzyme repeat DDE02_08720 PF13360 PQQ-like domain DDE02_08730 PF04143 Sulphur transport DDE02_08740 PF00753 Metallo-beta-lactamase superfamily DDE02_08745 PF09339 IclR helix-turn-helix domain DDE02_08745 PF01614 Bacterial transcriptional regulator DDE02_08750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_08750 PF03466 LysR substrate binding domain DDE02_08755 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_08755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_08755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_08770 PF00106 short chain dehydrogenase DDE02_08780 PF07690 Major Facilitator Superfamily DDE02_08790 PF01425 Amidase DDE02_08795 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DDE02_08810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DDE02_08810 PF00355 Rieske [2Fe-2S] domain DDE02_08825 PF00175 Oxidoreductase NAD-binding domain DDE02_08825 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_08830 PF01613 Flavin reductase like domain DDE02_08835 PF12833 Helix-turn-helix domain DDE02_08835 PF02311 AraC-like ligand binding domain DDE02_08840 PF07833 Copper amine oxidase N-terminal domain DDE02_08840 PF02727 Copper amine oxidase, N2 domain DDE02_08840 PF02728 Copper amine oxidase, N3 domain DDE02_08840 PF01179 Copper amine oxidase, enzyme domain DDE02_08850 PF00171 Aldehyde dehydrogenase family DDE02_08855 PF12146 Serine aminopeptidase, S33 DDE02_08860 PF02803 Thiolase, C-terminal domain DDE02_08860 PF00108 Thiolase, N-terminal domain DDE02_08865 PF01144 Coenzyme A transferase DDE02_08870 PF01144 Coenzyme A transferase DDE02_08875 PF00775 Dioxygenase DDE02_08875 PF04444 Catechol dioxygenase N terminus DDE02_08880 PF02426 Muconolactone delta-isomerase DDE02_08885 PF13378 Enolase C-terminal domain-like DDE02_08885 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDE02_08890 PF03466 LysR substrate binding domain DDE02_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_08900 PF00392 Bacterial regulatory proteins, gntR family DDE02_08900 PF07729 FCD domain DDE02_08905 PF00920 Dehydratase family DDE02_08910 PF07690 Major Facilitator Superfamily DDE02_08920 PF00171 Aldehyde dehydrogenase family DDE02_08925 PF00576 HIUase/Transthyretin family DDE02_08930 PF00860 Permease family DDE02_08940 PF01494 FAD binding domain DDE02_08945 PF00392 Bacterial regulatory proteins, gntR family DDE02_08945 PF07729 FCD domain DDE02_08960 PF09084 NMT1/THI5 like DDE02_08965 PF00005 ABC transporter DDE02_08970 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_08975 PF01979 Amidohydrolase family DDE02_08985 PF00561 alpha/beta hydrolase fold DDE02_08990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_08990 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_08995 PF00106 short chain dehydrogenase DDE02_09000 PF00376 MerR family regulatory protein DDE02_09000 PF09278 MerR, DNA binding DDE02_09010 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_09025 PF12706 Beta-lactamase superfamily domain DDE02_09030 PF00440 Bacterial regulatory proteins, tetR family DDE02_09030 PF08359 YsiA-like protein, C-terminal region DDE02_09035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09035 PF03466 LysR substrate binding domain DDE02_09050 PF00106 short chain dehydrogenase DDE02_09055 PF01575 MaoC like domain DDE02_09060 PF12806 Acetyl-CoA dehydrogenase C-terminal like DDE02_09060 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_09060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_09060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_09070 PF00501 AMP-binding enzyme DDE02_09070 PF13193 AMP-binding enzyme C-terminal domain DDE02_09090 PF00881 Nitroreductase family DDE02_09115 PF03485 Arginyl tRNA synthetase N terminal domain DDE02_09115 PF05746 DALR anticodon binding domain DDE02_09115 PF00750 tRNA synthetases class I (R) DDE02_09135 PF13737 Transposase DDE domain DDE02_09150 PF13533 Biotin-lipoyl like DDE02_09155 PF07690 Major Facilitator Superfamily DDE02_09180 PF01975 Survival protein SurE DDE02_09190 PF13291 ACT domain DDE02_09190 PF02824 TGS domain DDE02_09190 PF04607 Region found in RelA / SpoT proteins DDE02_09230 PF12833 Helix-turn-helix domain DDE02_09230 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_09235 PF00561 alpha/beta hydrolase fold DDE02_09240 PF03280 Proteobacterial lipase chaperone protein DDE02_09245 PF09905 DNA-binding protein VF530 DDE02_09325 PF16970 Type-1 fimbrial protein, A DDE02_09330 PF02753 Pili assembly chaperone PapD, C-terminal domain DDE02_09330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DDE02_09335 PF13954 PapC N-terminal domain DDE02_09335 PF00577 Outer membrane usher protein DDE02_09335 PF13953 PapC C-terminal domain DDE02_09340 PF00419 Fimbrial protein DDE02_09350 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_09350 PF00107 Zinc-binding dehydrogenase DDE02_09360 PF00199 Catalase DDE02_09380 PF13091 PLD-like domain DDE02_09390 PF16527 Two-component sensor protein CpxA, periplasmic domain DDE02_09390 PF00672 HAMP domain DDE02_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_09390 PF00512 His Kinase A (phospho-acceptor) domain DDE02_09395 PF00486 Transcriptional regulatory protein, C terminal DDE02_09395 PF00072 Response regulator receiver domain DDE02_09400 PF00529 HlyD membrane-fusion protein of T1SS DDE02_09400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_09405 PF00873 AcrB/AcrD/AcrF family DDE02_09420 PF01244 Membrane dipeptidase (Peptidase family M19) DDE02_09425 PF04055 Radical SAM superfamily DDE02_09425 PF13186 Iron-sulfur cluster-binding domain DDE02_09430 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DDE02_09435 PF03070 TENA/THI-4/PQQC family DDE02_09440 PF12706 Beta-lactamase superfamily domain DDE02_09445 PF08042 PqqA family DDE02_09450 PF00149 Calcineurin-like phosphoesterase DDE02_09460 PF00550 Phosphopantetheine attachment site DDE02_09460 PF00857 Isochorismatase family DDE02_09465 PF00106 short chain dehydrogenase DDE02_09470 PF00005 ABC transporter DDE02_09470 PF03459 TOBE domain DDE02_09475 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09485 PF03459 TOBE domain DDE02_09490 PF00355 Rieske [2Fe-2S] domain DDE02_09490 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DDE02_09495 PF00866 Ring hydroxylating beta subunit DDE02_09500 PF00970 Oxidoreductase FAD-binding domain DDE02_09500 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_09500 PF00175 Oxidoreductase NAD-binding domain DDE02_09505 PF14525 AraC-binding-like domain DDE02_09505 PF12833 Helix-turn-helix domain DDE02_09515 PF01613 Flavin reductase like domain DDE02_09530 PF01738 Dienelactone hydrolase family DDE02_09540 PF07690 Major Facilitator Superfamily DDE02_09545 PF06719 AraC-type transcriptional regulator N-terminus DDE02_09545 PF12833 Helix-turn-helix domain DDE02_09595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09595 PF03466 LysR substrate binding domain DDE02_09600 PF01144 Coenzyme A transferase DDE02_09605 PF01144 Coenzyme A transferase DDE02_09610 PF02667 Short chain fatty acid transporter DDE02_09615 PF02803 Thiolase, C-terminal domain DDE02_09615 PF00108 Thiolase, N-terminal domain DDE02_09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09620 PF03466 LysR substrate binding domain DDE02_09625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09625 PF03466 LysR substrate binding domain DDE02_09640 PF00206 Lyase DDE02_09640 PF10415 Fumarase C C-terminus DDE02_09645 PF07715 TonB-dependent Receptor Plug Domain DDE02_09645 PF00593 TonB dependent receptor DDE02_09650 PF00083 Sugar (and other) transporter DDE02_09660 PF02525 Flavodoxin-like fold DDE02_09665 PF01638 HxlR-like helix-turn-helix DDE02_09670 PF06445 GyrI-like small molecule binding domain DDE02_09670 PF12833 Helix-turn-helix domain DDE02_09690 PF01925 Sulfite exporter TauE/SafE DDE02_09695 PF04273 Putative phosphatase (DUF442) DDE02_09695 PF00753 Metallo-beta-lactamase superfamily DDE02_09700 PF00753 Metallo-beta-lactamase superfamily DDE02_09700 PF04273 Putative phosphatase (DUF442) DDE02_09705 PF02954 Bacterial regulatory protein, Fis family DDE02_09705 PF00072 Response regulator receiver domain DDE02_09705 PF00158 Sigma-54 interaction domain DDE02_09710 PF01062 Bestrophin, RFP-TM, chloride channel DDE02_09715 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_09715 PF00107 Zinc-binding dehydrogenase DDE02_09720 PF00106 short chain dehydrogenase DDE02_09725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_09725 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_09730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDE02_09730 PF00364 Biotin-requiring enzyme DDE02_09730 PF02817 e3 binding domain DDE02_09735 PF02779 Transketolase, pyrimidine binding domain DDE02_09735 PF02780 Transketolase, C-terminal domain DDE02_09740 PF00676 Dehydrogenase E1 component DDE02_09745 PF04055 Radical SAM superfamily DDE02_09760 PF00990 Diguanylate cyclase, GGDEF domain DDE02_09760 PF08448 PAS fold DDE02_09775 PF13737 Transposase DDE domain DDE02_09785 PF01264 Chorismate synthase DDE02_09790 PF05175 Methyltransferase small domain DDE02_09795 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_09805 PF17862 AAA+ lid domain DDE02_09805 PF01434 Peptidase family M41 DDE02_09805 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_09815 PF05166 YcgL domain DDE02_09835 PF03466 LysR substrate binding domain DDE02_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_09840 PF02525 Flavodoxin-like fold DDE02_09845 PF01612 3'-5' exonuclease DDE02_09845 PF00570 HRDC domain DDE02_09850 PF13737 Transposase DDE domain DDE02_09855 PF13662 Toprim domain DDE02_09855 PF02132 RecR protein DDE02_09860 PF02575 YbaB/EbfC DNA-binding family DDE02_09870 PF01053 Cys/Met metabolism PLP-dependent enzyme DDE02_09875 PF00561 alpha/beta hydrolase fold DDE02_09890 PF01230 HIT domain DDE02_09915 PF02684 Lipid-A-disaccharide synthetase DDE02_09920 PF00593 TonB dependent receptor DDE02_09920 PF07715 TonB-dependent Receptor Plug Domain DDE02_09945 PF01925 Sulfite exporter TauE/SafE DDE02_09950 PF00793 DAHP synthetase I family DDE02_09955 PF02654 Cobalamin-5-phosphate synthase DDE02_09970 PF02277 Phosphoribosyltransferase DDE02_09975 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DDE02_09995 PF07715 TonB-dependent Receptor Plug Domain DDE02_09995 PF00593 TonB dependent receptor DDE02_10000 PF04073 Aminoacyl-tRNA editing domain DDE02_10010 PF03109 ABC1 family DDE02_10015 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_10015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_10015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_10020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_10020 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_10020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_10025 PF00487 Fatty acid desaturase DDE02_10030 PF12833 Helix-turn-helix domain DDE02_10030 PF12852 Cupin DDE02_10035 PF09312 SurA N-terminal domain DDE02_10035 PF00639 PPIC-type PPIASE domain DDE02_10040 PF00216 Bacterial DNA-binding protein DDE02_10055 PF02082 Transcriptional regulator DDE02_10060 PF00266 Aminotransferase class-V DDE02_10065 PF01592 NifU-like N terminal domain DDE02_10070 PF01521 Iron-sulphur cluster biosynthesis DDE02_10075 PF07743 HSCB C-terminal oligomerisation domain DDE02_10075 PF00226 DnaJ domain DDE02_10080 PF00012 Hsp70 protein DDE02_10085 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_10090 PF00211 Adenylate and Guanylate cyclase catalytic domain DDE02_10100 PF00270 DEAD/DEAH box helicase DDE02_10100 PF00271 Helicase conserved C-terminal domain DDE02_10100 PF03461 TRCF domain DDE02_10100 PF17757 UvrB interaction domain DDE02_10100 PF02559 CarD-like/TRCF domain DDE02_10120 PF03737 Aldolase/RraA DDE02_10125 PF13460 NAD(P)H-binding DDE02_10130 PF01649 Ribosomal protein S20 DDE02_10140 PF00459 Inositol monophosphatase family DDE02_10155 PF00005 ABC transporter DDE02_10155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDE02_10160 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10160 PF12911 N-terminal TM domain of oligopeptide transport permease C DDE02_10165 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10170 PF01432 Peptidase family M3 DDE02_10175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDE02_10190 PF00593 TonB dependent receptor DDE02_10190 PF07715 TonB-dependent Receptor Plug Domain DDE02_10200 PF01618 MotA/TolQ/ExbB proton channel family DDE02_10205 PF02472 Biopolymer transport protein ExbD/TolR DDE02_10210 PF02472 Biopolymer transport protein ExbD/TolR DDE02_10220 PF01274 Malate synthase DDE02_10225 PF03969 AFG1-like ATPase DDE02_10235 PF00743 Flavin-binding monooxygenase-like DDE02_10240 PF03956 Lysine exporter LysO DDE02_10245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDE02_10255 PF00216 Bacterial DNA-binding protein DDE02_10260 PF00575 S1 RNA binding domain DDE02_10265 PF02224 Cytidylate kinase DDE02_10275 PF14437 MafB19-like deaminase DDE02_10285 PF03167 Uracil DNA glycosylase superfamily DDE02_10295 PF03934 Type II secretion system (T2SS), protein K DDE02_10300 PF07963 Prokaryotic N-terminal methylation motif DDE02_10300 PF11612 Type II secretion system (T2SS), protein J DDE02_10305 PF02501 Type II secretion system (T2SS), protein I DDE02_10305 PF07963 Prokaryotic N-terminal methylation motif DDE02_10320 PF01026 TatD related DNase DDE02_10330 PF09115 DNA polymerase III, delta subunit, C terminal DDE02_10335 PF02348 Cytidylyltransferase DDE02_10340 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DDE02_10345 PF00664 ABC transporter transmembrane region DDE02_10345 PF00005 ABC transporter DDE02_10355 PF01618 MotA/TolQ/ExbB proton channel family DDE02_10360 PF17762 HTH domain found in ParB protein DDE02_10360 PF02195 ParB-like nuclease domain DDE02_10365 PF13614 AAA domain DDE02_10370 PF02527 rRNA small subunit methyltransferase G DDE02_10375 PF00483 Nucleotidyl transferase DDE02_10380 PF01636 Phosphotransferase enzyme family DDE02_10385 PF03968 OstA-like protein DDE02_10385 PF04453 LPS transport system D DDE02_10390 PF00639 PPIC-type PPIASE domain DDE02_10390 PF09312 SurA N-terminal domain DDE02_10395 PF01116 Fructose-bisphosphate aldolase class-II DDE02_10405 PF00162 Phosphoglycerate kinase DDE02_10415 PF02545 Maf-like protein DDE02_10420 PF08007 Cupin superfamily protein DDE02_10435 PF00375 Sodium:dicarboxylate symporter family DDE02_10440 PF06912 Protein of unknown function (DUF1275) DDE02_10445 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DDE02_10450 PF00664 ABC transporter transmembrane region DDE02_10450 PF00005 ABC transporter DDE02_10460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_10460 PF12833 Helix-turn-helix domain DDE02_10465 PF01597 Glycine cleavage H-protein DDE02_10470 PF02146 Sir2 family DDE02_10475 PF00474 Sodium:solute symporter family DDE02_10480 PF01037 Lrp/AsnC ligand binding domain DDE02_10485 PF01619 Proline dehydrogenase DDE02_10485 PF00171 Aldehyde dehydrogenase family DDE02_10485 PF14850 DNA-binding domain of Proline dehydrogenase DDE02_10485 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DDE02_10490 PF04229 GrpB protein DDE02_10495 PF05958 tRNA (Uracil-5-)-methyltransferase DDE02_10505 PF09992 Phosphodiester glycosidase DDE02_10515 PF04264 YceI-like domain DDE02_10525 PF00456 Transketolase, thiamine diphosphate binding domain DDE02_10525 PF02780 Transketolase, C-terminal domain DDE02_10525 PF02779 Transketolase, pyrimidine binding domain DDE02_10530 PF02773 S-adenosylmethionine synthetase, C-terminal domain DDE02_10530 PF00438 S-adenosylmethionine synthetase, N-terminal domain DDE02_10530 PF02772 S-adenosylmethionine synthetase, central domain DDE02_10550 PF00905 Penicillin binding protein transpeptidase domain DDE02_10565 PF02075 Crossover junction endodeoxyribonuclease RuvC DDE02_10570 PF03853 YjeF-related protein N-terminus DDE02_10570 PF01256 Carbohydrate kinase DDE02_10575 PF08331 Domain of unknown function (DUF1730) DDE02_10580 PF04055 Radical SAM superfamily DDE02_10580 PF06968 Biotin and Thiamin Synthesis associated domain DDE02_10595 PF16970 Type-1 fimbrial protein, A DDE02_10600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DDE02_10600 PF02753 Pili assembly chaperone PapD, C-terminal domain DDE02_10605 PF00577 Outer membrane usher protein DDE02_10605 PF13954 PapC N-terminal domain DDE02_10605 PF13953 PapC C-terminal domain DDE02_10610 PF00419 Fimbrial protein DDE02_10620 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_10620 PF12833 Helix-turn-helix domain DDE02_10630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_10630 PF03466 LysR substrate binding domain DDE02_10635 PF00892 EamA-like transporter family DDE02_10645 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DDE02_10655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_10655 PF03466 LysR substrate binding domain DDE02_10670 PF00440 Bacterial regulatory proteins, tetR family DDE02_10680 PF01709 Transcriptional regulator DDE02_10685 PF01037 Lrp/AsnC ligand binding domain DDE02_10695 PF00005 ABC transporter DDE02_10700 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10705 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10720 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DDE02_10720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_10730 PF00296 Luciferase-like monooxygenase DDE02_10735 PF03180 NLPA lipoprotein DDE02_10740 PF03180 NLPA lipoprotein DDE02_10745 PF00005 ABC transporter DDE02_10745 PF09383 NIL domain DDE02_10750 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10755 PF01926 50S ribosome-binding GTPase DDE02_10755 PF06071 Protein of unknown function (DUF933) DDE02_10780 PF03591 AzlC protein DDE02_10785 PF05437 Branched-chain amino acid transport protein (AzlD) DDE02_10795 PF02222 ATP-grasp domain DDE02_10800 PF08335 GlnD PII-uridylyltransferase DDE02_10800 PF01966 HD domain DDE02_10800 PF01909 Nucleotidyltransferase domain DDE02_10805 PF00155 Aminotransferase class I and II DDE02_10815 PF12852 Cupin DDE02_10815 PF12833 Helix-turn-helix domain DDE02_10820 PF00255 Glutathione peroxidase DDE02_10825 PF01641 SelR domain DDE02_10830 PF00155 Aminotransferase class I and II DDE02_10835 PF00375 Sodium:dicarboxylate symporter family DDE02_10840 PF00710 Asparaginase, N-terminal DDE02_10840 PF17763 Glutaminase/Asparaginase C-terminal domain DDE02_10845 PF02811 PHP domain DDE02_10845 PF01336 OB-fold nucleic acid binding domain DDE02_10845 PF14579 Helix-hairpin-helix motif DDE02_10845 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDE02_10845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDE02_10850 PF00588 SpoU rRNA Methylase family DDE02_10855 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_10870 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_10870 PF13192 Thioredoxin domain DDE02_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_10885 PF03466 LysR substrate binding domain DDE02_10890 PF03358 NADPH-dependent FMN reductase DDE02_10895 PF01758 Sodium Bile acid symporter family DDE02_10905 PF01022 Bacterial regulatory protein, arsR family DDE02_10910 PF03960 ArsC family DDE02_10920 PF01979 Amidohydrolase family DDE02_10920 PF13382 Adenine deaminase C-terminal domain DDE02_10930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_10930 PF03466 LysR substrate binding domain DDE02_10940 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DDE02_10945 PF01177 Asp/Glu/Hydantoin racemase DDE02_10950 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DDE02_10955 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_10960 PF00005 ABC transporter DDE02_10965 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DDE02_10975 PF00083 Sugar (and other) transporter DDE02_10980 PF00296 Luciferase-like monooxygenase DDE02_10985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DDE02_10985 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_10985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_11000 PF01654 Cytochrome bd terminal oxidase subunit I DDE02_11005 PF02322 Cytochrome bd terminal oxidase subunit II DDE02_11015 PF00155 Aminotransferase class I and II DDE02_11015 PF00392 Bacterial regulatory proteins, gntR family DDE02_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11020 PF03466 LysR substrate binding domain DDE02_11035 PF00698 Acyl transferase domain DDE02_11040 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DDE02_11050 PF01039 Carboxyl transferase domain DDE02_11055 PF06857 Malonate decarboxylase delta subunit (MdcD) DDE02_11060 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DDE02_11065 PF16957 Malonate decarboxylase, alpha subunit, transporter DDE02_11080 PF00155 Aminotransferase class I and II DDE02_11080 PF00392 Bacterial regulatory proteins, gntR family DDE02_11085 PF04172 LrgB-like family DDE02_11090 PF03788 LrgA family DDE02_11095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11095 PF03466 LysR substrate binding domain DDE02_11100 PF14834 Glutathione S-transferase, C-terminal domain DDE02_11100 PF02798 Glutathione S-transferase, N-terminal domain DDE02_11105 PF02798 Glutathione S-transferase, N-terminal domain DDE02_11125 PF03466 LysR substrate binding domain DDE02_11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11135 PF00581 Rhodanese-like domain DDE02_11140 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_11150 PF00266 Aminotransferase class-V DDE02_11160 PF01810 LysE type translocator DDE02_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11165 PF03466 LysR substrate binding domain DDE02_11170 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_11175 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_11180 PF00005 ABC transporter DDE02_11185 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_11190 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_11205 PF00072 Response regulator receiver domain DDE02_11210 PF00072 Response regulator receiver domain DDE02_11210 PF09308 LuxQ, periplasmic DDE02_11210 PF00512 His Kinase A (phospho-acceptor) domain DDE02_11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_11220 PF01037 Lrp/AsnC ligand binding domain DDE02_11220 PF13404 AsnC-type helix-turn-helix domain DDE02_11230 PF00717 Peptidase S24-like DDE02_11255 PF06628 Catalase-related immune-responsive DDE02_11255 PF00199 Catalase DDE02_11255 PF18011 C-terminal domain found in long catalases DDE02_11385 PF04233 Phage Mu protein F like protein DDE02_11390 PF06074 Protein of unknown function (DUF935) DDE02_11395 PF03237 Terminase-like family DDE02_11485 PF00216 Bacterial DNA-binding protein DDE02_11545 PF03466 LysR substrate binding domain DDE02_11545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11560 PF07690 Major Facilitator Superfamily DDE02_11575 PF13193 AMP-binding enzyme C-terminal domain DDE02_11575 PF00501 AMP-binding enzyme DDE02_11580 PF00440 Bacterial regulatory proteins, tetR family DDE02_11585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_11585 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_11585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_11590 PF01039 Carboxyl transferase domain DDE02_11595 PF00378 Enoyl-CoA hydratase/isomerase DDE02_11600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_11600 PF18140 Propionyl-coenzyme A carboxylase BT domain DDE02_11600 PF00364 Biotin-requiring enzyme DDE02_11600 PF02785 Biotin carboxylase C-terminal domain DDE02_11600 PF00289 Biotin carboxylase, N-terminal domain DDE02_11605 PF00682 HMGL-like DDE02_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11610 PF03466 LysR substrate binding domain DDE02_11625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_11625 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_11625 PF12806 Acetyl-CoA dehydrogenase C-terminal like DDE02_11625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_11635 PF07690 Major Facilitator Superfamily DDE02_11645 PF01144 Coenzyme A transferase DDE02_11650 PF01144 Coenzyme A transferase DDE02_11655 PF07690 Major Facilitator Superfamily DDE02_11660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_11660 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_11660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_11665 PF00378 Enoyl-CoA hydratase/isomerase DDE02_11675 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DDE02_11675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE02_11675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDE02_11680 PF00108 Thiolase, N-terminal domain DDE02_11680 PF02803 Thiolase, C-terminal domain DDE02_11685 PF09339 IclR helix-turn-helix domain DDE02_11690 PF07690 Major Facilitator Superfamily DDE02_11695 PF03060 Nitronate monooxygenase DDE02_11700 PF00378 Enoyl-CoA hydratase/isomerase DDE02_11705 PF09339 IclR helix-turn-helix domain DDE02_11710 PF02515 CoA-transferase family III DDE02_11715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_11715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_11715 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_11720 PF07690 Major Facilitator Superfamily DDE02_11725 PF13419 Haloacid dehalogenase-like hydrolase DDE02_11730 PF00266 Aminotransferase class-V DDE02_11735 PF01266 FAD dependent oxidoreductase DDE02_11740 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_11745 PF08402 TOBE domain DDE02_11745 PF00005 ABC transporter DDE02_11755 PF07702 UTRA domain DDE02_11755 PF00392 Bacterial regulatory proteins, gntR family DDE02_11765 PF01168 Alanine racemase, N-terminal domain DDE02_11765 PF00842 Alanine racemase, C-terminal domain DDE02_11770 PF01494 FAD binding domain DDE02_11775 PF01614 Bacterial transcriptional regulator DDE02_11775 PF09339 IclR helix-turn-helix domain DDE02_11780 PF02525 Flavodoxin-like fold DDE02_11785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11785 PF03466 LysR substrate binding domain DDE02_11810 PF13737 Transposase DDE domain DDE02_11820 PF03061 Thioesterase superfamily DDE02_11825 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_11830 PF08223 PaaX-like protein C-terminal domain DDE02_11830 PF07848 PaaX-like protein DDE02_11835 PF14535 AMP-binding enzyme C-terminal domain DDE02_11835 PF00501 AMP-binding enzyme DDE02_11840 PF00108 Thiolase, N-terminal domain DDE02_11840 PF02803 Thiolase, C-terminal domain DDE02_11845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE02_11845 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DDE02_11845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDE02_11850 PF00378 Enoyl-CoA hydratase/isomerase DDE02_11855 PF00378 Enoyl-CoA hydratase/isomerase DDE02_11860 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_11860 PF00175 Oxidoreductase NAD-binding domain DDE02_11860 PF00970 Oxidoreductase FAD-binding domain DDE02_11865 PF01883 Iron-sulfur cluster assembly protein DDE02_11870 PF05138 Phenylacetic acid catabolic protein DDE02_11875 PF06243 Phenylacetic acid degradation B DDE02_11880 PF05138 Phenylacetic acid catabolic protein DDE02_11885 PF00171 Aldehyde dehydrogenase family DDE02_11885 PF01575 MaoC like domain DDE02_11890 PF03313 Serine dehydratase alpha chain DDE02_11890 PF03315 Serine dehydratase beta chain DDE02_11910 PF00376 MerR family regulatory protein DDE02_11910 PF09278 MerR, DNA binding DDE02_11920 PF02677 Epoxyqueuosine reductase QueH DDE02_11925 PF00155 Aminotransferase class I and II DDE02_11925 PF00392 Bacterial regulatory proteins, gntR family DDE02_11940 PF07690 Major Facilitator Superfamily DDE02_11945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDE02_11950 PF12796 Ankyrin repeats (3 copies) DDE02_11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11955 PF03466 LysR substrate binding domain DDE02_11970 PF13737 Transposase DDE domain DDE02_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_11980 PF03466 LysR substrate binding domain DDE02_11985 PF07690 Major Facilitator Superfamily DDE02_12000 PF00005 ABC transporter DDE02_12005 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDE02_12010 PF01425 Amidase DDE02_12015 PF08753 NikR C terminal nickel binding domain DDE02_12015 PF01402 Ribbon-helix-helix protein, copG family DDE02_12025 PF01638 HxlR-like helix-turn-helix DDE02_12030 PF02525 Flavodoxin-like fold DDE02_12035 PF02785 Biotin carboxylase C-terminal domain DDE02_12035 PF00289 Biotin carboxylase, N-terminal domain DDE02_12035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_12050 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_12050 PF00107 Zinc-binding dehydrogenase DDE02_12050 PF13823 Alcohol dehydrogenase GroES-associated DDE02_12055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE02_12055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDE02_12060 PF00892 EamA-like transporter family DDE02_12090 PF13332 Hemagglutinin repeat DDE02_12090 PF13018 Extended Signal Peptide of Type V secretion system DDE02_12090 PF05860 haemagglutination activity domain DDE02_12090 PF04829 Pre-toxin domain with VENN motif DDE02_12095 PF08479 POTRA domain, ShlB-type DDE02_12095 PF17287 POTRA domain DDE02_12095 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DDE02_12100 PF00654 Voltage gated chloride channel DDE02_12105 PF02785 Biotin carboxylase C-terminal domain DDE02_12105 PF00289 Biotin carboxylase, N-terminal domain DDE02_12105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDE02_12105 PF00364 Biotin-requiring enzyme DDE02_12115 PF07286 Protein of unknown function (DUF1445) DDE02_12120 PF03746 LamB/YcsF family DDE02_12125 PF01566 Natural resistance-associated macrophage protein DDE02_12130 PF03466 LysR substrate binding domain DDE02_12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_12140 PF08281 Sigma-70, region 4 DDE02_12140 PF04542 Sigma-70 region 2 DDE02_12150 PF05114 Protein of unknown function (DUF692) DDE02_12230 PF00990 Diguanylate cyclase, GGDEF domain DDE02_12230 PF03707 Bacterial signalling protein N terminal repeat DDE02_12230 PF00563 EAL domain DDE02_12255 PF07690 Major Facilitator Superfamily DDE02_12260 PF01292 Prokaryotic cytochrome b561 DDE02_12265 PF00199 Catalase DDE02_12270 PF01638 HxlR-like helix-turn-helix DDE02_12290 PF02649 Type I GTP cyclohydrolase folE2 DDE02_12295 PF00101 Ribulose bisphosphate carboxylase, small chain DDE02_12295 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_12300 PF01979 Amidohydrolase family DDE02_12310 PF00892 EamA-like transporter family DDE02_12315 PF01037 Lrp/AsnC ligand binding domain DDE02_12320 PF13520 Amino acid permease DDE02_12325 PF01636 Phosphotransferase enzyme family DDE02_12335 PF12833 Helix-turn-helix domain DDE02_12335 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_12340 PF00202 Aminotransferase class-III DDE02_12345 PF05190 MutS family domain IV DDE02_12345 PF01624 MutS domain I DDE02_12345 PF05188 MutS domain II DDE02_12345 PF05192 MutS domain III DDE02_12345 PF00488 MutS domain V DDE02_12355 PF11953 Domain of unknown function (DUF3470) DDE02_12355 PF00037 4Fe-4S binding domain DDE02_12365 PF01596 O-methyltransferase DDE02_12375 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_12380 PF01205 Uncharacterized protein family UPF0029 DDE02_12385 PF13533 Biotin-lipoyl like DDE02_12390 PF03412 Peptidase C39 family DDE02_12390 PF00005 ABC transporter DDE02_12390 PF00664 ABC transporter transmembrane region DDE02_12395 PF02321 Outer membrane efflux protein DDE02_12400 PF12399 Branched-chain amino acid ATP-binding cassette transporter DDE02_12400 PF00005 ABC transporter DDE02_12405 PF03968 OstA-like protein DDE02_12420 PF00571 CBS domain DDE02_12420 PF01380 SIS domain DDE02_12425 PF09190 DALR domain DDE02_12425 PF01406 tRNA synthetases class I (C) catalytic domain DDE02_12465 PF01638 HxlR-like helix-turn-helix DDE02_12470 PF07690 Major Facilitator Superfamily DDE02_12480 PF00924 Mechanosensitive ion channel DDE02_12525 PF00440 Bacterial regulatory proteins, tetR family DDE02_12555 PF08241 Methyltransferase domain DDE02_12560 PF13419 Haloacid dehalogenase-like hydrolase DDE02_12565 PF01037 Lrp/AsnC ligand binding domain DDE02_12575 PF03807 NADP oxidoreductase coenzyme F420-dependent DDE02_12575 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDE02_12585 PF00313 'Cold-shock' DNA-binding domain DDE02_12590 PF03279 Bacterial lipid A biosynthesis acyltransferase DDE02_12600 PF13737 Transposase DDE domain DDE02_12640 PF02601 Exonuclease VII, large subunit DDE02_12640 PF13742 OB-fold nucleic acid binding domain DDE02_12675 PF00376 MerR family regulatory protein DDE02_12675 PF09278 MerR, DNA binding DDE02_12680 PF00403 Heavy-metal-associated domain DDE02_12690 PF02954 Bacterial regulatory protein, Fis family DDE02_12690 PF00158 Sigma-54 interaction domain DDE02_12690 PF06505 Activator of aromatic catabolism DDE02_12690 PF02830 V4R domain DDE02_12700 PF06099 Phenol hydroxylase subunit DDE02_12705 PF02332 Methane/Phenol/Toluene Hydroxylase DDE02_12710 PF02406 MmoB/DmpM family DDE02_12715 PF04945 YHS domain DDE02_12715 PF02332 Methane/Phenol/Toluene Hydroxylase DDE02_12725 PF00175 Oxidoreductase NAD-binding domain DDE02_12725 PF00970 Oxidoreductase FAD-binding domain DDE02_12725 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_12735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_12735 PF03466 LysR substrate binding domain DDE02_12745 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DDE02_12745 PF00355 Rieske [2Fe-2S] domain DDE02_12750 PF00866 Ring hydroxylating beta subunit DDE02_12755 PF00970 Oxidoreductase FAD-binding domain DDE02_12755 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_12755 PF00175 Oxidoreductase NAD-binding domain DDE02_12760 PF00106 short chain dehydrogenase DDE02_12765 PF03594 Benzoate membrane transport protein DDE02_12770 PF07690 Major Facilitator Superfamily DDE02_12780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDE02_12780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDE02_12785 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DDE02_12785 PF00271 Helicase conserved C-terminal domain DDE02_12785 PF04408 Helicase associated domain (HA2) DDE02_12785 PF11898 Domain of unknown function (DUF3418) DDE02_12785 PF00270 DEAD/DEAH box helicase DDE02_12790 PF00578 AhpC/TSA family DDE02_12790 PF10417 C-terminal domain of 1-Cys peroxiredoxin DDE02_12810 PF13192 Thioredoxin domain DDE02_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_12820 PF00043 Glutathione S-transferase, C-terminal domain DDE02_12820 PF02798 Glutathione S-transferase, N-terminal domain DDE02_12830 PF02390 Putative methyltransferase DDE02_12840 PF13737 Transposase DDE domain DDE02_12860 PF13417 Glutathione S-transferase, N-terminal domain DDE02_12860 PF00043 Glutathione S-transferase, C-terminal domain DDE02_12870 PF00691 OmpA family DDE02_12870 PF13488 Glycine zipper DDE02_12875 PF01979 Amidohydrolase family DDE02_12880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDE02_12880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDE02_12890 PF10672 S-adenosylmethionine-dependent methyltransferase DDE02_12890 PF01170 Putative RNA methylase family UPF0020 DDE02_12890 PF02926 THUMP domain DDE02_12905 PF17871 AAA lid domain DDE02_12905 PF10431 C-terminal, D2-small domain, of ClpB protein DDE02_12905 PF07724 AAA domain (Cdc48 subfamily) DDE02_12905 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_12905 PF02861 Clp amino terminal domain, pathogenicity island component DDE02_12920 PF02566 OsmC-like protein DDE02_12930 PF00027 Cyclic nucleotide-binding domain DDE02_12930 PF13545 Crp-like helix-turn-helix domain DDE02_12935 PF00248 Aldo/keto reductase family DDE02_12950 PF00709 Adenylosuccinate synthetase DDE02_12955 PF13393 Histidyl-tRNA synthetase DDE02_12965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDE02_12965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDE02_12970 PF01411 tRNA synthetases class II (A) DDE02_12970 PF02272 DHHA1 domain DDE02_12970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDE02_12980 PF08019 Phosphoethanolamine transferase EptA/EptB DDE02_12980 PF00884 Sulfatase DDE02_13030 PF05154 TM2 domain DDE02_13090 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) DDE02_13110 PF06381 Protein of unknown function (DUF1073) DDE02_13185 PF00145 C-5 cytosine-specific DNA methylase DDE02_13200 PF01381 Helix-turn-helix DDE02_13200 PF00717 Peptidase S24-like DDE02_13255 PF01842 ACT domain DDE02_13255 PF13840 ACT domain DDE02_13255 PF00696 Amino acid kinase family DDE02_13260 PF02599 Global regulator protein family DDE02_13265 PF01351 Ribonuclease HII DDE02_13275 PF01292 Prokaryotic cytochrome b561 DDE02_13280 PF00962 Adenosine/AMP deaminase DDE02_13285 PF00860 Permease family DDE02_13295 PF02678 Pirin DDE02_13295 PF17954 Quercetinase C-terminal cupin domain DDE02_13300 PF17932 Tetracyclin repressor-like, C-terminal domain DDE02_13300 PF00440 Bacterial regulatory proteins, tetR family DDE02_13310 PF00106 short chain dehydrogenase DDE02_13315 PF00743 Flavin-binding monooxygenase-like DDE02_13320 PF04072 Leucine carboxyl methyltransferase DDE02_13325 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_13325 PF12833 Helix-turn-helix domain DDE02_13330 PF00743 Flavin-binding monooxygenase-like DDE02_13335 PF00106 short chain dehydrogenase DDE02_13340 PF07859 alpha/beta hydrolase fold DDE02_13345 PF05199 GMC oxidoreductase DDE02_13350 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DDE02_13350 PF18381 YcaO cyclodehydratase C-terminal domain DDE02_13355 PF03573 outer membrane porin, OprD family DDE02_13360 PF07690 Major Facilitator Superfamily DDE02_13365 PF00884 Sulfatase DDE02_13370 PF03781 Sulfatase-modifying factor enzyme 1 DDE02_13380 PF00355 Rieske [2Fe-2S] domain DDE02_13385 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_13385 PF00175 Oxidoreductase NAD-binding domain DDE02_13405 PF07690 Major Facilitator Superfamily DDE02_13410 PF00378 Enoyl-CoA hydratase/isomerase DDE02_13415 PF00171 Aldehyde dehydrogenase family DDE02_13425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_13425 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_13425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_13430 PF03573 outer membrane porin, OprD family DDE02_13445 PF07519 Tannase and feruloyl esterase DDE02_13450 PF00392 Bacterial regulatory proteins, gntR family DDE02_13450 PF07729 FCD domain DDE02_13455 PF00171 Aldehyde dehydrogenase family DDE02_13460 PF00701 Dihydrodipicolinate synthetase family DDE02_13465 PF13378 Enolase C-terminal domain-like DDE02_13470 PF07690 Major Facilitator Superfamily DDE02_13475 PF08666 SAF domain DDE02_13475 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DDE02_13480 PF00892 EamA-like transporter family DDE02_13485 PF12833 Helix-turn-helix domain DDE02_13485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDE02_13490 PF00171 Aldehyde dehydrogenase family DDE02_13500 PF13332 Hemagglutinin repeat DDE02_13500 PF05860 haemagglutination activity domain DDE02_13500 PF04829 Pre-toxin domain with VENN motif DDE02_13500 PF13018 Extended Signal Peptide of Type V secretion system DDE02_13505 PF17287 POTRA domain DDE02_13505 PF08479 POTRA domain, ShlB-type DDE02_13505 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DDE02_13510 PF00324 Amino acid permease DDE02_13515 PF04958 Arginine N-succinyltransferase beta subunit DDE02_13520 PF00202 Aminotransferase class-III DDE02_13530 PF00171 Aldehyde dehydrogenase family DDE02_13540 PF07729 FCD domain DDE02_13540 PF00392 Bacterial regulatory proteins, gntR family DDE02_13550 PF00324 Amino acid permease DDE02_13555 PF01266 FAD dependent oxidoreductase DDE02_13560 PF00324 Amino acid permease DDE02_13570 PF05643 Putative bacterial lipoprotein (DUF799) DDE02_13580 PF03783 Curli production assembly/transport component CsgG DDE02_13605 PF05987 Bacterial protein of unknown function (DUF898) DDE02_13630 PF13676 TIR domain DDE02_13635 PF09828 Chromate resistance exported protein DDE02_13640 PF02417 Chromate transporter DDE02_13650 PF01545 Cation efflux family DDE02_13650 PF16916 Dimerisation domain of Zinc Transporter DDE02_13665 PF07690 Major Facilitator Superfamily DDE02_13685 PF00873 AcrB/AcrD/AcrF family DDE02_13690 PF00529 HlyD membrane-fusion protein of T1SS DDE02_13690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_13770 PF00589 Phage integrase family DDE02_13770 PF13356 Arm DNA-binding domain DDE02_13780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_13780 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_13785 PF00764 Arginosuccinate synthase DDE02_13790 PF00360 Phytochrome region DDE02_13790 PF00990 Diguanylate cyclase, GGDEF domain DDE02_13790 PF00563 EAL domain DDE02_13790 PF01590 GAF domain DDE02_13795 PF01979 Amidohydrolase family DDE02_13800 PF00929 Exonuclease DDE02_13815 PF07715 TonB-dependent Receptor Plug Domain DDE02_13815 PF00593 TonB dependent receptor DDE02_13820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_13820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_13825 PF00005 ABC transporter DDE02_13825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDE02_13830 PF12911 N-terminal TM domain of oligopeptide transport permease C DDE02_13830 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_13835 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_13840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDE02_13845 PF01464 Transglycosylase SLT domain DDE02_13845 PF01476 LysM domain DDE02_13845 PF01464 Transglycosylase SLT domain DDE02_13845 PF01476 LysM domain DDE02_13850 PF00929 Exonuclease DDE02_13860 PF00293 NUDIX domain DDE02_13860 PF09297 NADH pyrophosphatase zinc ribbon domain DDE02_13870 PF04972 BON domain DDE02_13875 PF02021 Uncharacterised protein family UPF0102 DDE02_13880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDE02_13890 PF03466 LysR substrate binding domain DDE02_13890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_13895 PF01810 LysE type translocator DDE02_13905 PF13411 MerR HTH family regulatory protein DDE02_13915 PF01494 FAD binding domain DDE02_13920 PF01494 FAD binding domain DDE02_13925 PF00557 Metallopeptidase family M24 DDE02_13925 PF05195 Aminopeptidase P, N-terminal domain DDE02_13965 PF01812 5-formyltetrahydrofolate cyclo-ligase family DDE02_13970 PF00004 ATPase family associated with various cellular activities (AAA) DDE02_13970 PF05362 Lon protease (S16) C-terminal proteolytic domain DDE02_13970 PF02190 ATP-dependent protease La (LON) substrate-binding domain DDE02_13975 PF02590 Predicted SPOUT methyltransferase DDE02_13980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DDE02_13990 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DDE02_13990 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDE02_13995 PF04060 Putative Fe-S cluster DDE02_14000 PF10576 Iron-sulfur binding domain of endonuclease III DDE02_14000 PF00633 Helix-hairpin-helix motif DDE02_14000 PF00730 HhH-GPD superfamily base excision DNA repair protein DDE02_14010 PF05191 Adenylate kinase, active site lid DDE02_14025 PF00905 Penicillin binding protein transpeptidase domain DDE02_14025 PF03717 Penicillin-binding Protein dimerisation domain DDE02_14040 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDE02_14045 PF01730 UreF DDE02_14050 PF05194 UreE urease accessory protein, C-terminal domain DDE02_14050 PF02814 UreE urease accessory protein, N-terminal domain DDE02_14055 PF00449 Urease alpha-subunit, N-terminal domain DDE02_14055 PF01979 Amidohydrolase family DDE02_14060 PF00699 Urease beta subunit DDE02_14065 PF00547 Urease, gamma subunit DDE02_14070 PF01774 UreD urease accessory protein DDE02_14080 PF04170 NlpE N-terminal domain DDE02_14080 PF17185 NlpE C-terminal OB domain DDE02_14085 PF00463 Isocitrate lyase family DDE02_14090 PF03466 LysR substrate binding domain DDE02_14090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_14095 PF00571 CBS domain DDE02_14095 PF03471 Transporter associated domain DDE02_14095 PF01595 Cyclin M transmembrane N-terminal domain DDE02_14100 PF03600 Citrate transporter DDE02_14115 PF00009 Elongation factor Tu GTP binding domain DDE02_14120 PF01507 Phosphoadenosine phosphosulfate reductase family DDE02_14130 PF14052 Capsule assembly protein Wzi DDE02_14135 PF00152 tRNA synthetases class II (D, K and N) DDE02_14135 PF01336 OB-fold nucleic acid binding domain DDE02_14150 PF00301 Rubredoxin DDE02_14155 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_14155 PF18113 Rubredoxin binding C-terminal domain DDE02_14160 PF00561 alpha/beta hydrolase fold DDE02_14165 PF03466 LysR substrate binding domain DDE02_14165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_14180 PF13090 Polyphosphate kinase C-terminal domain 2 DDE02_14180 PF17941 Polyphosphate kinase C-terminal domain 1 DDE02_14180 PF13089 Polyphosphate kinase N-terminal domain DDE02_14180 PF02503 Polyphosphate kinase middle domain DDE02_14185 PF00912 Transglycosylase DDE02_14190 PF01694 Rhomboid family DDE02_14200 PF00005 ABC transporter DDE02_14205 PF13472 GDSL-like Lipase/Acylhydrolase family DDE02_14210 PF00484 Carbonic anhydrase DDE02_14215 PF00561 alpha/beta hydrolase fold DDE02_14225 PF07715 TonB-dependent Receptor Plug Domain DDE02_14225 PF00593 TonB dependent receptor DDE02_14230 PF01106 NifU-like domain DDE02_14230 PF01521 Iron-sulphur cluster biosynthesis DDE02_14240 PF00884 Sulfatase DDE02_14245 PF03781 Sulfatase-modifying factor enzyme 1 DDE02_14260 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_14265 PF01384 Phosphate transporter family DDE02_14275 PF02310 B12 binding domain DDE02_14275 PF02607 B12 binding domain DDE02_14275 PF02965 Vitamin B12 dependent methionine synthase, activation domain DDE02_14275 PF00809 Pterin binding enzyme DDE02_14275 PF02574 Homocysteine S-methyltransferase DDE02_14280 PF02780 Transketolase, C-terminal domain DDE02_14280 PF02779 Transketolase, pyrimidine binding domain DDE02_14285 PF00456 Transketolase, thiamine diphosphate binding domain DDE02_14290 PF07690 Major Facilitator Superfamily DDE02_14300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_14300 PF03466 LysR substrate binding domain DDE02_14315 PF01263 Aldose 1-epimerase DDE02_14320 PF07690 Major Facilitator Superfamily DDE02_14325 PF12833 Helix-turn-helix domain DDE02_14325 PF07883 Cupin domain DDE02_14330 PF04960 Glutaminase DDE02_14335 PF01327 Polypeptide deformylase DDE02_14340 PF07690 Major Facilitator Superfamily DDE02_14350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDE02_14350 PF00205 Thiamine pyrophosphate enzyme, central domain DDE02_14350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDE02_14355 PF00171 Aldehyde dehydrogenase family DDE02_14360 PF01958 Domain of unknown function DUF108 DDE02_14360 PF03447 Homoserine dehydrogenase, NAD binding domain DDE02_14370 PF12697 Alpha/beta hydrolase family DDE02_14380 PF07690 Major Facilitator Superfamily DDE02_14385 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_14385 PF14759 Reductase C-terminal DDE02_14390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_14400 PF00355 Rieske [2Fe-2S] domain DDE02_14410 PF00355 Rieske [2Fe-2S] domain DDE02_14415 PF09339 IclR helix-turn-helix domain DDE02_14415 PF01614 Bacterial transcriptional regulator DDE02_14430 PF00378 Enoyl-CoA hydratase/isomerase DDE02_14440 PF00535 Glycosyl transferase family 2 DDE02_14445 PF14883 Hypothetical glycosyl hydrolase family 13 DDE02_14445 PF01522 Polysaccharide deacetylase DDE02_14450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_14455 PF07152 YaeQ protein DDE02_14460 PF00375 Sodium:dicarboxylate symporter family DDE02_14465 PF07683 Cobalamin synthesis protein cobW C-terminal domain DDE02_14465 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDE02_14475 PF03061 Thioesterase superfamily DDE02_14485 PF02028 BCCT, betaine/carnitine/choline family transporter DDE02_14490 PF02028 BCCT, betaine/carnitine/choline family transporter DDE02_14495 PF13977 BetI-type transcriptional repressor, C-terminal DDE02_14495 PF00440 Bacterial regulatory proteins, tetR family DDE02_14500 PF00171 Aldehyde dehydrogenase family DDE02_14505 PF00732 GMC oxidoreductase DDE02_14505 PF05199 GMC oxidoreductase DDE02_14510 PF06039 Malate:quinone oxidoreductase (Mqo) DDE02_14520 PF02574 Homocysteine S-methyltransferase DDE02_14525 PF13520 Amino acid permease DDE02_14560 PF04717 Type VI secretion system, phage-baseplate injector DDE02_14560 PF13296 Putative type VI secretion system Rhs element Vgr DDE02_14560 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DDE02_14575 PF00701 Dihydrodipicolinate synthetase family DDE02_14580 PF00083 Sugar (and other) transporter DDE02_14650 PF07728 AAA domain (dynein-related subfamily) DDE02_14650 PF12102 Domain of unknown function (DUF3578) DDE02_14665 PF02384 N-6 DNA Methylase DDE02_14690 PF00436 Single-strand binding protein family DDE02_14735 PF13356 Arm DNA-binding domain DDE02_14735 PF00589 Phage integrase family DDE02_14750 PF07690 Major Facilitator Superfamily DDE02_14755 PF13533 Biotin-lipoyl like DDE02_14760 PF03061 Thioesterase superfamily DDE02_14765 PF00490 Delta-aminolevulinic acid dehydratase DDE02_14770 PF01266 FAD dependent oxidoreductase DDE02_14775 PF08338 Domain of unknown function (DUF1731) DDE02_14775 PF01370 NAD dependent epimerase/dehydratase family DDE02_14795 PF00149 Calcineurin-like phosphoesterase DDE02_14795 PF12320 Type 5 capsule protein repressor C-terminal domain DDE02_14805 PF01168 Alanine racemase, N-terminal domain DDE02_14810 PF00437 Type II/IV secretion system protein DDE02_14815 PF00437 Type II/IV secretion system protein DDE02_14820 PF01475 Ferric uptake regulator family DDE02_14825 PF04355 SmpA / OmlA family DDE02_14830 PF03658 RnfH family Ubiquitin DDE02_14845 PF01814 Hemerythrin HHE cation binding domain DDE02_14850 PF13230 Glutamine amidotransferases class-II DDE02_14860 PF00696 Amino acid kinase family DDE02_14865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDE02_14865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDE02_14865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDE02_14865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDE02_14870 PF00692 dUTPase DDE02_14875 PF00580 UvrD/REP helicase N-terminal domain DDE02_14875 PF13361 UvrD-like helicase C-terminal domain DDE02_14880 PF13488 Glycine zipper DDE02_14880 PF00691 OmpA family DDE02_14885 PF01553 Acyltransferase DDE02_14895 PF03775 Septum formation inhibitor MinC, C-terminal domain DDE02_14900 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DDE02_14905 PF03776 Septum formation topological specificity factor MinE DDE02_14915 PF01810 LysE type translocator DDE02_14920 PF01580 FtsK/SpoIIIE family DDE02_14920 PF17854 FtsK alpha domain DDE02_14920 PF09397 Ftsk gamma domain DDE02_14920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DDE02_14925 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_14930 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DDE02_14935 PF04377 Arginine-tRNA-protein transferase, C terminus DDE02_14935 PF04376 Arginine-tRNA-protein transferase, N terminus DDE02_14940 PF00583 Acetyltransferase (GNAT) family DDE02_14955 PF03144 Elongation factor Tu domain 2 DDE02_14955 PF00009 Elongation factor Tu GTP binding domain DDE02_14955 PF03143 Elongation factor Tu C-terminal domain DDE02_14960 PF00679 Elongation factor G C-terminus DDE02_14960 PF03764 Elongation factor G, domain IV DDE02_14960 PF00009 Elongation factor Tu GTP binding domain DDE02_14960 PF03144 Elongation factor Tu domain 2 DDE02_14960 PF14492 Elongation Factor G, domain II DDE02_14965 PF00177 Ribosomal protein S7p/S5e DDE02_14970 PF00164 Ribosomal protein S12/S23 DDE02_14980 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_14980 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_14985 PF03653 Uncharacterised protein family (UPF0093) DDE02_14995 PF00795 Carbon-nitrogen hydrolase DDE02_14995 PF02540 NAD synthase DDE02_15010 PF00175 Oxidoreductase NAD-binding domain DDE02_15010 PF00970 Oxidoreductase FAD-binding domain DDE02_15010 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_15015 PF00171 Aldehyde dehydrogenase family DDE02_15020 PF00355 Rieske [2Fe-2S] domain DDE02_15020 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DDE02_15025 PF07859 alpha/beta hydrolase fold DDE02_15030 PF02028 BCCT, betaine/carnitine/choline family transporter DDE02_15035 PF00180 Isocitrate/isopropylmalate dehydrogenase DDE02_15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15040 PF03466 LysR substrate binding domain DDE02_15060 PF00037 4Fe-4S binding domain DDE02_15065 PF01467 Cytidylyltransferase-like DDE02_15070 PF01668 SmpB protein DDE02_15075 PF03358 NADPH-dependent FMN reductase DDE02_15080 PF02578 Multi-copper polyphenol oxidoreductase laccase DDE02_15085 PF00849 RNA pseudouridylate synthase DDE02_15085 PF01479 S4 domain DDE02_15090 PF13525 Outer membrane lipoprotein DDE02_15095 PF08275 DNA primase catalytic core, N-terminal domain DDE02_15095 PF08278 DNA primase DnaG DnaB-binding DDE02_15095 PF10410 DnaB-helicase binding domain of primase DDE02_15095 PF01807 CHC2 zinc finger DDE02_15100 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DDE02_15100 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DDE02_15100 PF01488 Shikimate / quinate 5-dehydrogenase DDE02_15110 PF03550 Outer membrane lipoprotein LolB DDE02_15115 PF08544 GHMP kinases C terminal DDE02_15115 PF00288 GHMP kinases N terminal domain DDE02_15140 PF14572 Phosphoribosyl synthetase-associated domain DDE02_15140 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDE02_15145 PF01386 Ribosomal L25p family DDE02_15150 PF01195 Peptidyl-tRNA hydrolase DDE02_15155 PF02261 Aspartate decarboxylase DDE02_15170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDE02_15180 PF02581 Thiamine monophosphate synthase DDE02_15180 PF08543 Phosphomethylpyrimidine kinase DDE02_15180 PF03070 TENA/THI-4/PQQC family DDE02_15185 PF01476 LysM domain DDE02_15185 PF04972 BON domain DDE02_15190 PF00550 Phosphopantetheine attachment site DDE02_15200 PF00698 Acyl transferase domain DDE02_15205 PF01783 Ribosomal L32p protein family DDE02_15210 PF02620 Large ribosomal RNA subunit accumulation protein YceD DDE02_15215 PF04315 Elongation factor P hydroxylase DDE02_15220 PF01300 Telomere recombination DDE02_15225 PF02616 Segregation and condensation protein ScpA DDE02_15230 PF04079 Segregation and condensation complex subunit ScpB DDE02_15235 PF00849 RNA pseudouridylate synthase DDE02_15235 PF01479 S4 domain DDE02_15250 PF00155 Aminotransferase class I and II DDE02_15255 PF00202 Aminotransferase class-III DDE02_15255 PF04055 Radical SAM superfamily DDE02_15255 PF06968 Biotin and Thiamin Synthesis associated domain DDE02_15260 PF12697 Alpha/beta hydrolase family DDE02_15260 PF08241 Methyltransferase domain DDE02_15265 PF02358 Trehalose-phosphatase DDE02_15270 PF00982 Glycosyltransferase family 20 DDE02_15275 PF07690 Major Facilitator Superfamily DDE02_15280 PF00210 Ferritin-like domain DDE02_15285 PF00533 BRCA1 C Terminus (BRCT) domain DDE02_15285 PF01653 NAD-dependent DNA ligase adenylation domain DDE02_15285 PF03120 NAD-dependent DNA ligase OB-fold domain DDE02_15285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DDE02_15285 PF12826 Helix-hairpin-helix motif DDE02_15295 PF06470 SMC proteins Flexible Hinge Domain DDE02_15295 PF02463 RecF/RecN/SMC N terminal domain DDE02_15305 PF01925 Sulfite exporter TauE/SafE DDE02_15315 PF03309 Type III pantothenate kinase DDE02_15320 PF02881 SRP54-type protein, helical bundle domain DDE02_15320 PF02978 Signal peptide binding domain DDE02_15320 PF00448 SRP54-type protein, GTPase domain DDE02_15330 PF01207 Dihydrouridine synthase (Dus) DDE02_15365 PF00692 dUTPase DDE02_15380 PF01048 Phosphorylase superfamily DDE02_15385 PF10609 NUBPL iron-transfer P-loop NTPase DDE02_15395 PF09334 tRNA synthetases class I (M) DDE02_15395 PF01588 Putative tRNA binding domain DDE02_15425 PF13533 Biotin-lipoyl like DDE02_15430 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_15445 PF05552 Conserved TM helix DDE02_15460 PF00970 Oxidoreductase FAD-binding domain DDE02_15460 PF00175 Oxidoreductase NAD-binding domain DDE02_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15465 PF03466 LysR substrate binding domain DDE02_15480 PF00361 Proton-conducting membrane transporter DDE02_15485 PF00361 Proton-conducting membrane transporter DDE02_15490 PF00361 Proton-conducting membrane transporter DDE02_15490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDE02_15495 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DDE02_15500 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DDE02_15505 PF12838 4Fe-4S dicluster domain DDE02_15510 PF00146 NADH dehydrogenase DDE02_15515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDE02_15515 PF00384 Molybdopterin oxidoreductase DDE02_15515 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DDE02_15520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDE02_15520 PF10531 SLBB domain DDE02_15520 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DDE02_15530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DDE02_15530 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DDE02_15535 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DDE02_15540 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DDE02_15545 PF00990 Diguanylate cyclase, GGDEF domain DDE02_15555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_15555 PF00672 HAMP domain DDE02_15555 PF00512 His Kinase A (phospho-acceptor) domain DDE02_15560 PF00072 Response regulator receiver domain DDE02_15560 PF00486 Transcriptional regulatory protein, C terminal DDE02_15565 PF03477 ATP cone domain DDE02_15565 PF02867 Ribonucleotide reductase, barrel domain DDE02_15565 PF00317 Ribonucleotide reductase, all-alpha domain DDE02_15575 PF00268 Ribonucleotide reductase, small chain DDE02_15615 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_15620 PF00534 Glycosyl transferases group 1 DDE02_15620 PF09318 Glycosyl transferase 1 domain A DDE02_15640 PF03412 Peptidase C39 family DDE02_15640 PF00005 ABC transporter DDE02_15640 PF00664 ABC transporter transmembrane region DDE02_15645 PF02321 Outer membrane efflux protein DDE02_15655 PF17074 Darcynin, domain of unknown function DDE02_15665 PF17074 Darcynin, domain of unknown function DDE02_15690 PF01613 Flavin reductase like domain DDE02_15695 PF08267 Cobalamin-independent synthase, N-terminal domain DDE02_15695 PF01717 Cobalamin-independent synthase, Catalytic domain DDE02_15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15705 PF03466 LysR substrate binding domain DDE02_15710 PF01810 LysE type translocator DDE02_15725 PF01970 Tripartite tricarboxylate transporter TctA family DDE02_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15740 PF03466 LysR substrate binding domain DDE02_15750 PF07690 Major Facilitator Superfamily DDE02_15775 PF03466 LysR substrate binding domain DDE02_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15780 PF14537 Cytochrome c3 DDE02_15780 PF00890 FAD binding domain DDE02_15795 PF00440 Bacterial regulatory proteins, tetR family DDE02_15795 PF17932 Tetracyclin repressor-like, C-terminal domain DDE02_15805 PF02515 CoA-transferase family III DDE02_15810 PF07690 Major Facilitator Superfamily DDE02_15815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_15815 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_15815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_15820 PF03466 LysR substrate binding domain DDE02_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_15825 PF00107 Zinc-binding dehydrogenase DDE02_15825 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_15830 PF00962 Adenosine/AMP deaminase DDE02_15855 PF02445 Quinolinate synthetase A protein DDE02_15860 PF01960 ArgJ family DDE02_15865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDE02_15865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDE02_15870 PF00893 Small Multidrug Resistance protein DDE02_15885 PF07731 Multicopper oxidase DDE02_15885 PF07732 Multicopper oxidase DDE02_15885 PF00394 Multicopper oxidase DDE02_15900 PF00834 Ribulose-phosphate 3 epimerase family DDE02_15910 PF00756 Putative esterase DDE02_15920 PF04445 Putative SAM-dependent methyltransferase DDE02_15925 PF00814 Glycoprotease family DDE02_15930 PF00132 Bacterial transferase hexapeptide (six repeats) DDE02_15935 PF00293 NUDIX domain DDE02_15975 PF04715 Anthranilate synthase component I, N terminal region DDE02_15975 PF00425 chorismate binding enzyme DDE02_15980 PF00155 Aminotransferase class I and II DDE02_15985 PF00815 Histidinol dehydrogenase DDE02_15990 PF01634 ATP phosphoribosyltransferase DDE02_15995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDE02_16000 PF01722 BolA-like protein DDE02_16005 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDE02_16010 PF00309 Sigma-54 factor, Activator interacting domain (AID) DDE02_16010 PF04552 Sigma-54, DNA binding domain DDE02_16010 PF04963 Sigma-54 factor, core binding domain DDE02_16055 PF00795 Carbon-nitrogen hydrolase DDE02_16065 PF01047 MarR family DDE02_16070 PF02566 OsmC-like protein DDE02_16075 PF00437 Type II/IV secretion system protein DDE02_16095 PF01612 3'-5' exonuclease DDE02_16095 PF01367 5'-3' exonuclease, C-terminal SAM fold DDE02_16095 PF00476 DNA polymerase family A DDE02_16095 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DDE02_16100 PF02325 YGGT family DDE02_16105 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDE02_16105 PF03807 NADP oxidoreductase coenzyme F420-dependent DDE02_16110 PF01171 PP-loop family DDE02_16110 PF09179 TilS substrate binding domain DDE02_16110 PF11734 TilS substrate C-terminal domain DDE02_16115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DDE02_16120 PF02541 Ppx/GppA phosphatase family DDE02_16125 PF00085 Thioredoxin DDE02_16130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDE02_16130 PF07497 Rho termination factor, RNA-binding domain DDE02_16130 PF07498 Rho termination factor, N-terminal domain DDE02_16145 PF00216 Bacterial DNA-binding protein DDE02_16150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DDE02_16150 PF01588 Putative tRNA binding domain DDE02_16150 PF03147 Ferredoxin-fold anticodon binding domain DDE02_16150 PF03484 tRNA synthetase B5 domain DDE02_16150 PF03483 B3/4 domain DDE02_16155 PF01409 tRNA synthetases class II core domain (F) DDE02_16155 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DDE02_16170 PF00453 Ribosomal protein L20 DDE02_16175 PF01632 Ribosomal protein L35 DDE02_16185 PF07690 Major Facilitator Superfamily DDE02_16190 PF09335 SNARE associated Golgi protein DDE02_16195 PF00043 Glutathione S-transferase, C-terminal domain DDE02_16195 PF02798 Glutathione S-transferase, N-terminal domain DDE02_16205 PF05198 Translation initiation factor IF-3, N-terminal domain DDE02_16205 PF00707 Translation initiation factor IF-3, C-terminal domain DDE02_16210 PF03129 Anticodon binding domain DDE02_16210 PF02824 TGS domain DDE02_16210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDE02_16210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDE02_16215 PF00501 AMP-binding enzyme DDE02_16215 PF13193 AMP-binding enzyme C-terminal domain DDE02_16220 PF04751 Protein of unknown function (DUF615) DDE02_16225 PF00381 PTS HPr component phosphorylation site DDE02_16230 PF03668 P-loop ATPase protein family DDE02_16235 PF02569 Pantoate-beta-alanine ligase DDE02_16240 PF02548 Ketopantoate hydroxymethyltransferase DDE02_16245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DDE02_16250 PF01743 Poly A polymerase head domain DDE02_16250 PF12626 Polymerase A arginine-rich C-terminus DDE02_16250 PF12627 Probable RNA and SrmB- binding site of polymerase A DDE02_16260 PF03819 MazG nucleotide pyrophosphohydrolase domain DDE02_16265 PF00106 short chain dehydrogenase DDE02_16270 PF13291 ACT domain DDE02_16270 PF04607 Region found in RelA / SpoT proteins DDE02_16270 PF02824 TGS domain DDE02_16275 PF05958 tRNA (Uracil-5-)-methyltransferase DDE02_16285 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_16290 PF00672 HAMP domain DDE02_16290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_16290 PF00512 His Kinase A (phospho-acceptor) domain DDE02_16290 PF01627 Hpt domain DDE02_16290 PF00072 Response regulator receiver domain DDE02_16290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DDE02_16295 PF00378 Enoyl-CoA hydratase/isomerase DDE02_16300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDE02_16300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDE02_16305 PF01261 Xylose isomerase-like TIM barrel DDE02_16320 PF00106 short chain dehydrogenase DDE02_16325 PF02233 NAD(P) transhydrogenase beta subunit DDE02_16330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DDE02_16335 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DDE02_16335 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DDE02_16340 PF00892 EamA-like transporter family DDE02_16350 PF07690 Major Facilitator Superfamily DDE02_16385 PF13411 MerR HTH family regulatory protein DDE02_16400 PF02421 Ferrous iron transport protein B DDE02_16400 PF07664 Ferrous iron transport protein B C terminus DDE02_16400 PF07670 Nucleoside recognition DDE02_16410 PF00873 AcrB/AcrD/AcrF family DDE02_16415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_16435 PF07731 Multicopper oxidase DDE02_16435 PF07732 Multicopper oxidase DDE02_16435 PF00394 Multicopper oxidase DDE02_16445 PF00486 Transcriptional regulatory protein, C terminal DDE02_16445 PF00072 Response regulator receiver domain DDE02_16450 PF00672 HAMP domain DDE02_16450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_16450 PF00512 His Kinase A (phospho-acceptor) domain DDE02_16530 PF00589 Phage integrase family DDE02_16535 PF01207 Dihydrouridine synthase (Dus) DDE02_16550 PF03466 LysR substrate binding domain DDE02_16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_16560 PF00899 ThiF family DDE02_16565 PF00330 Aconitase family (aconitate hydratase) DDE02_16565 PF00694 Aconitase C-terminal domain DDE02_16570 PF01026 TatD related DNase DDE02_16585 PF00009 Elongation factor Tu GTP binding domain DDE02_16585 PF16658 Class II release factor RF3, C-terminal domain DDE02_16585 PF03144 Elongation factor Tu domain 2 DDE02_16600 PF03707 Bacterial signalling protein N terminal repeat DDE02_16600 PF00990 Diguanylate cyclase, GGDEF domain DDE02_16600 PF00563 EAL domain DDE02_16605 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DDE02_16605 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DDE02_16610 PF10369 Small subunit of acetolactate synthase DDE02_16615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDE02_16615 PF00205 Thiamine pyrophosphate enzyme, central domain DDE02_16615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDE02_16620 PF00133 tRNA synthetases class I (I, L, M and V) DDE02_16620 PF09334 tRNA synthetases class I (M) DDE02_16620 PF13603 Leucyl-tRNA synthetase, Domain 2 DDE02_16620 PF08264 Anticodon-binding domain of tRNA DDE02_16635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDE02_16640 PF12704 MacB-like periplasmic core domain DDE02_16640 PF02687 FtsX-like permease family DDE02_16640 PF00005 ABC transporter DDE02_16645 PF02321 Outer membrane efflux protein DDE02_16670 PF00929 Exonuclease DDE02_16675 PF03193 RsgA GTPase DDE02_16685 PF00462 Glutaredoxin DDE02_16690 PF02556 Preprotein translocase subunit SecB DDE02_16700 PF01926 50S ribosome-binding GTPase DDE02_16700 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DDE02_16705 PF13360 PQQ-like domain DDE02_16705 PF01011 PQQ enzyme repeat DDE02_16715 PF03129 Anticodon binding domain DDE02_16715 PF13393 Histidyl-tRNA synthetase DDE02_16720 PF04551 GcpE protein DDE02_16725 PF13464 Domain of unknown function (DUF4115) DDE02_16735 PF04055 Radical SAM superfamily DDE02_16740 PF00334 Nucleoside diphosphate kinase DDE02_16745 PF04384 Iron-sulphur cluster assembly DDE02_16750 PF01569 PAP2 superfamily DDE02_16755 PF13439 Glycosyltransferase Family 4 DDE02_16755 PF00534 Glycosyl transferases group 1 DDE02_16760 PF11818 C-terminal domain of tail specific protease (DUF3340) DDE02_16760 PF00595 PDZ domain DDE02_16760 PF03572 Peptidase family S41 DDE02_16760 PF17804 Tail specific protease N-terminal domain DDE02_16765 PF00933 Glycosyl hydrolase family 3 N terminal domain DDE02_16775 PF00561 alpha/beta hydrolase fold DDE02_16780 PF00171 Aldehyde dehydrogenase family DDE02_16785 PF00171 Aldehyde dehydrogenase family DDE02_16790 PF01202 Shikimate kinase DDE02_16795 PF02447 GntP family permease DDE02_16800 PF01081 KDPG and KHG aldolase DDE02_16805 PF00920 Dehydratase family DDE02_16815 PF00871 Acetokinase family DDE02_16820 PF07085 DRTGG domain DDE02_16820 PF01515 Phosphate acetyl/butaryl transferase DDE02_16825 PF05681 Fumarate hydratase (Fumerase) DDE02_16825 PF05683 Fumarase C-terminus DDE02_16840 PF07724 AAA domain (Cdc48 subfamily) DDE02_16840 PF10431 C-terminal, D2-small domain, of ClpB protein DDE02_16840 PF06689 ClpX C4-type zinc finger DDE02_16845 PF00574 Clp protease DDE02_16850 PF05697 Bacterial trigger factor protein (TF) DDE02_16850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_16850 PF05698 Bacterial trigger factor protein (TF) C-terminus DDE02_16855 PF00593 TonB dependent receptor DDE02_16855 PF07715 TonB-dependent Receptor Plug Domain DDE02_16860 PF13640 2OG-Fe(II) oxygenase superfamily DDE02_16860 PF18331 PKHD-type hydroxylase C-terminal domain DDE02_16865 PF08502 LeuA allosteric (dimerisation) domain DDE02_16865 PF00682 HMGL-like DDE02_16870 PF00561 alpha/beta hydrolase fold DDE02_16875 PF00561 alpha/beta hydrolase fold DDE02_16875 PF07021 Methionine biosynthesis protein MetW DDE02_16885 PF01725 Ham1 family DDE02_16895 PF02416 mttA/Hcf106 family DDE02_16900 PF02416 mttA/Hcf106 family DDE02_16905 PF00902 Sec-independent protein translocase protein (TatC) DDE02_16925 PF01790 Prolipoprotein diacylglyceryl transferase DDE02_16940 PF00303 Thymidylate synthase DDE02_16945 PF00186 Dihydrofolate reductase DDE02_16955 PF01625 Peptide methionine sulfoxide reductase DDE02_16965 PF01618 MotA/TolQ/ExbB proton channel family DDE02_16975 PF01842 ACT domain DDE02_16975 PF00551 Formyl transferase DDE02_16985 PF00171 Aldehyde dehydrogenase family DDE02_16990 PF00830 Ribosomal L28 family DDE02_16995 PF00471 Ribosomal protein L33 DDE02_17000 PF00999 Sodium/hydrogen exchanger family DDE02_17000 PF02254 TrkA-N domain DDE02_17020 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DDE02_17025 PF00580 UvrD/REP helicase N-terminal domain DDE02_17025 PF13361 UvrD-like helicase C-terminal domain DDE02_17040 PF01131 DNA topoisomerase DDE02_17040 PF01751 Toprim domain DDE02_17040 PF08272 Topoisomerase I zinc-ribbon-like DDE02_17040 PF01396 Topoisomerase DNA binding C4 zinc finger DDE02_17050 PF01638 HxlR-like helix-turn-helix DDE02_17055 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_17055 PF00107 Zinc-binding dehydrogenase DDE02_17060 PF04102 SlyX DDE02_17065 PF12848 ABC transporter DDE02_17065 PF16326 ABC transporter C-terminal domain DDE02_17065 PF00005 ABC transporter DDE02_17075 PF03279 Bacterial lipid A biosynthesis acyltransferase DDE02_17085 PF00375 Sodium:dicarboxylate symporter family DDE02_17095 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDE02_17095 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDE02_17115 PF01416 tRNA pseudouridine synthase DDE02_17125 PF01176 Translation initiation factor 1A / IF-1 DDE02_17140 PF00180 Isocitrate/isopropylmalate dehydrogenase DDE02_17150 PF00694 Aconitase C-terminal domain DDE02_17155 PF00330 Aconitase family (aconitate hydratase) DDE02_17165 PF03466 LysR substrate binding domain DDE02_17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_17185 PF00293 NUDIX domain DDE02_17190 PF05524 PEP-utilising enzyme, N-terminal DDE02_17190 PF01590 GAF domain DDE02_17190 PF00391 PEP-utilising enzyme, mobile domain DDE02_17190 PF02896 PEP-utilising enzyme, TIM barrel domain DDE02_17195 PF00141 Peroxidase DDE02_17200 PF12706 Beta-lactamase superfamily domain DDE02_17205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_17205 PF03466 LysR substrate binding domain DDE02_17215 PF02798 Glutathione S-transferase, N-terminal domain DDE02_17220 PF13280 WYL domain DDE02_17220 PF08279 HTH domain DDE02_17225 PF13419 Haloacid dehalogenase-like hydrolase DDE02_17230 PF00849 RNA pseudouridylate synthase DDE02_17230 PF01479 S4 domain DDE02_17240 PF10150 Ribonuclease E/G family DDE02_17240 PF12111 Polyribonucleotide phosphorylase C terminal DDE02_17240 PF00575 S1 RNA binding domain DDE02_17245 PF00501 AMP-binding enzyme DDE02_17245 PF13193 AMP-binding enzyme C-terminal domain DDE02_17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_17260 PF03466 LysR substrate binding domain DDE02_17270 PF06969 HemN C-terminal domain DDE02_17270 PF04055 Radical SAM superfamily DDE02_17280 PF01554 MatE DDE02_17285 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DDE02_17285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_17285 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_17290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_17290 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DDE02_17295 PF03109 ABC1 family DDE02_17300 PF01197 Ribosomal protein L31 DDE02_17310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DDE02_17320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DDE02_17320 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_17330 PF03884 DNA gyrase inhibitor YacG DDE02_17335 PF00753 Metallo-beta-lactamase superfamily DDE02_17340 PF00762 Ferrochelatase DDE02_17350 PF01177 Asp/Glu/Hydantoin racemase DDE02_17370 PF01206 Sulfurtransferase TusA DDE02_17375 PF03471 Transporter associated domain DDE02_17375 PF00571 CBS domain DDE02_17380 PF00795 Carbon-nitrogen hydrolase DDE02_17385 PF01588 Putative tRNA binding domain DDE02_17395 PF08334 Type II secretion system (T2SS), protein G DDE02_17395 PF07963 Prokaryotic N-terminal methylation motif DDE02_17400 PF00482 Type II secretion system (T2SS), protein F DDE02_17405 PF00270 DEAD/DEAH box helicase DDE02_17405 PF17764 3′ DNA-binding domain (3′BD) DDE02_17405 PF18074 Primosomal protein N C-terminal domain DDE02_17405 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DDE02_17405 PF00271 Helicase conserved C-terminal domain DDE02_17410 PF00999 Sodium/hydrogen exchanger family DDE02_17410 PF02254 TrkA-N domain DDE02_17415 PF01430 Hsp33 protein DDE02_17425 PF00226 DnaJ domain DDE02_17425 PF01556 DnaJ C terminal domain DDE02_17435 PF01544 CorA-like Mg2+ transporter protein DDE02_17440 PF00575 S1 RNA binding domain DDE02_17440 PF03725 3' exoribonuclease family, domain 2 DDE02_17440 PF00013 KH domain DDE02_17440 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DDE02_17440 PF01138 3' exoribonuclease family, domain 1 DDE02_17445 PF00312 Ribosomal protein S15 DDE02_17450 PF00144 Beta-lactamase DDE02_17455 PF13538 UvrD-like helicase C-terminal domain DDE02_17460 PF12705 PD-(D/E)XK nuclease superfamily DDE02_17460 PF00580 UvrD/REP helicase N-terminal domain DDE02_17460 PF13361 UvrD-like helicase C-terminal domain DDE02_17465 PF17946 RecC C-terminal domain DDE02_17475 PF03976 Polyphosphate kinase 2 (PPK2) DDE02_17485 PF01209 ubiE/COQ5 methyltransferase family DDE02_17495 PF03109 ABC1 family DDE02_17500 PF01494 FAD binding domain DDE02_17505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_17510 PF01502 Phosphoribosyl-AMP cyclohydrolase DDE02_17525 PF13244 Domain of unknown function (DUF4040) DDE02_17525 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DDE02_17525 PF00361 Proton-conducting membrane transporter DDE02_17525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDE02_17530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DDE02_17535 PF00361 Proton-conducting membrane transporter DDE02_17540 PF01899 Na+/H+ ion antiporter subunit DDE02_17545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DDE02_17550 PF03334 Na+/H+ antiporter subunit DDE02_17555 PF02033 Ribosome-binding factor A DDE02_17560 PF04760 Translation initiation factor IF-2, N-terminal region DDE02_17560 PF11987 Translation-initiation factor 2 DDE02_17560 PF00009 Elongation factor Tu GTP binding domain DDE02_17560 PF08364 Bacterial translation initiation factor IF-2 associated region DDE02_17565 PF13184 NusA-like KH domain DDE02_17565 PF08529 NusA N-terminal domain DDE02_17565 PF00575 S1 RNA binding domain DDE02_17570 PF17384 RimP C-terminal SH3 domain DDE02_17570 PF02576 RimP N-terminal domain DDE02_17590 PF03840 Preprotein translocase SecG subunit DDE02_17595 PF00121 Triosephosphate isomerase DDE02_17600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DDE02_17600 PF00437 Type II/IV secretion system protein DDE02_17605 PF00482 Type II secretion system (T2SS), protein F DDE02_17610 PF01478 Type IV leader peptidase family DDE02_17610 PF06750 Bacterial Peptidase A24 N-terminal domain DDE02_17615 PF01121 Dephospho-CoA kinase DDE02_17625 PF00588 SpoU rRNA Methylase family DDE02_17625 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDE02_17630 PF06865 Pyrimidine/purine nucleoside phosphorylase DDE02_17640 PF02463 RecF/RecN/SMC N terminal domain DDE02_17645 PF02622 Uncharacterized ACR, COG1678 DDE02_17650 PF03652 Holliday junction resolvase DDE02_17655 PF13533 Biotin-lipoyl like DDE02_17685 PF02805 Metal binding domain of Ada DDE02_17685 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDE02_17685 PF12833 Helix-turn-helix domain DDE02_17685 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDE02_17690 PF01066 CDP-alcohol phosphatidyltransferase DDE02_17700 PF08459 UvrC Helix-hairpin-helix N-terminal DDE02_17700 PF01541 GIY-YIG catalytic domain DDE02_17700 PF02151 UvrB/uvrC motif DDE02_17730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDE02_17730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE02_17730 PF00378 Enoyl-CoA hydratase/isomerase DDE02_17735 PF02803 Thiolase, C-terminal domain DDE02_17735 PF00108 Thiolase, N-terminal domain DDE02_17750 PF00376 MerR family regulatory protein DDE02_17750 PF09278 MerR, DNA binding DDE02_17760 PF01323 DSBA-like thioredoxin domain DDE02_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_17775 PF00183 Hsp90 protein DDE02_17790 PF13726 Na+-H+ antiporter family DDE02_17790 PF03553 Na+/H+ antiporter family DDE02_17815 PF04998 RNA polymerase Rpb1, domain 5 DDE02_17815 PF05000 RNA polymerase Rpb1, domain 4 DDE02_17815 PF00623 RNA polymerase Rpb1, domain 2 DDE02_17815 PF04997 RNA polymerase Rpb1, domain 1 DDE02_17815 PF04983 RNA polymerase Rpb1, domain 3 DDE02_17820 PF04563 RNA polymerase beta subunit DDE02_17820 PF04561 RNA polymerase Rpb2, domain 2 DDE02_17820 PF04565 RNA polymerase Rpb2, domain 3 DDE02_17820 PF10385 RNA polymerase beta subunit external 1 domain DDE02_17820 PF00562 RNA polymerase Rpb2, domain 6 DDE02_17820 PF04560 RNA polymerase Rpb2, domain 7 DDE02_17825 PF00542 Ribosomal protein L7/L12 C-terminal domain DDE02_17825 PF16320 Ribosomal protein L7/L12 dimerisation domain DDE02_17830 PF00466 Ribosomal protein L10 DDE02_17835 PF00687 Ribosomal protein L1p/L10e family DDE02_17840 PF00298 Ribosomal protein L11, RNA binding domain DDE02_17840 PF03946 Ribosomal protein L11, N-terminal domain DDE02_17845 PF00467 KOW motif DDE02_17845 PF02357 Transcription termination factor nusG DDE02_17850 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DDE02_17860 PF03143 Elongation factor Tu C-terminal domain DDE02_17860 PF03144 Elongation factor Tu domain 2 DDE02_17860 PF00009 Elongation factor Tu GTP binding domain DDE02_17885 PF04715 Anthranilate synthase component I, N terminal region DDE02_17885 PF00425 chorismate binding enzyme DDE02_17890 PF13419 Haloacid dehalogenase-like hydrolase DDE02_17895 PF12401 Protein of unknown function (DUF2662) DDE02_17895 PF00498 FHA domain DDE02_17900 PF00263 Bacterial type II and III secretion system protein DDE02_17900 PF03958 Bacterial type II/III secretion system short domain DDE02_17915 PF00816 H-NS histone family DDE02_17940 PF03900 Porphobilinogen deaminase, C-terminal domain DDE02_17940 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DDE02_17945 PF04397 LytTr DNA-binding domain DDE02_17945 PF00072 Response regulator receiver domain DDE02_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_17950 PF06580 Histidine kinase DDE02_17950 PF07694 5TMR of 5TMR-LYT DDE02_17955 PF14698 Argininosuccinate lyase C-terminal DDE02_17955 PF00206 Lyase DDE02_17960 PF04362 Bacterial Fe(2+) trafficking DDE02_17965 PF01895 PhoU domain DDE02_17970 PF02321 Outer membrane efflux protein DDE02_17980 PF00892 EamA-like transporter family DDE02_17995 PF13667 ThiC-associated domain DDE02_17995 PF01964 Radical SAM ThiC family DDE02_18000 PF00293 NUDIX domain DDE02_18005 PF00149 Calcineurin-like phosphoesterase DDE02_18010 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDE02_18015 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDE02_18020 PF01098 Cell cycle protein DDE02_18025 PF02875 Mur ligase family, glutamate ligase domain DDE02_18025 PF08245 Mur ligase middle domain DDE02_18035 PF07670 Nucleoside recognition DDE02_18035 PF02421 Ferrous iron transport protein B DDE02_18035 PF07664 Ferrous iron transport protein B C terminus DDE02_18045 PF00589 Phage integrase family DDE02_18045 PF02899 Phage integrase, N-terminal SAM-like domain DDE02_18050 PF10411 Disulfide bond isomerase protein N-terminus DDE02_18050 PF13098 Thioredoxin-like domain DDE02_18055 PF01842 ACT domain DDE02_18055 PF00742 Homoserine dehydrogenase DDE02_18055 PF03447 Homoserine dehydrogenase, NAD binding domain DDE02_18060 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_18065 PF00768 D-alanyl-D-alanine carboxypeptidase DDE02_18070 PF00196 Bacterial regulatory proteins, luxR family DDE02_18070 PF00072 Response regulator receiver domain DDE02_18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_18075 PF00512 His Kinase A (phospho-acceptor) domain DDE02_18080 PF00072 Response regulator receiver domain DDE02_18080 PF00158 Sigma-54 interaction domain DDE02_18080 PF02954 Bacterial regulatory protein, Fis family DDE02_18085 PF00595 PDZ domain DDE02_18085 PF03572 Peptidase family S41 DDE02_18090 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DDE02_18090 PF01676 Metalloenzyme superfamily DDE02_18095 PF03739 Lipopolysaccharide export system permease LptF/LptG DDE02_18105 PF02789 Cytosol aminopeptidase family, N-terminal domain DDE02_18105 PF00883 Cytosol aminopeptidase family, catalytic domain DDE02_18125 PF00677 Lumazine binding domain DDE02_18135 PF01872 RibD C-terminal domain DDE02_18135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDE02_18140 PF03477 ATP cone domain DDE02_18145 PF00909 Ammonium Transporter Family DDE02_18150 PF00543 Nitrogen regulatory protein P-II DDE02_18160 PF13335 Magnesium chelatase, subunit ChlI C-terminal DDE02_18160 PF01078 Magnesium chelatase, subunit ChlI DDE02_18165 PF03358 NADPH-dependent FMN reductase DDE02_18170 PF00155 Aminotransferase class I and II DDE02_18170 PF00392 Bacterial regulatory proteins, gntR family DDE02_18175 PF00596 Class II Aldolase and Adducin N-terminal domain DDE02_18180 PF00701 Dihydrodipicolinate synthetase family DDE02_18195 PF03573 outer membrane porin, OprD family DDE02_18200 PF00719 Inorganic pyrophosphatase DDE02_18215 PF13193 AMP-binding enzyme C-terminal domain DDE02_18215 PF00501 AMP-binding enzyme DDE02_18220 PF03989 DNA gyrase C-terminal domain, beta-propeller DDE02_18220 PF00521 DNA gyrase/topoisomerase IV, subunit A DDE02_18225 PF07690 Major Facilitator Superfamily DDE02_18230 PF03458 UPF0126 domain DDE02_18235 PF02810 SEC-C motif DDE02_18240 PF03471 Transporter associated domain DDE02_18240 PF03741 Integral membrane protein TerC family DDE02_18245 PF03641 Possible lysine decarboxylase DDE02_18250 PF07690 Major Facilitator Superfamily DDE02_18255 PF01183 Glycosyl hydrolases family 25 DDE02_18260 PF11799 impB/mucB/samB family C-terminal domain DDE02_18260 PF11798 IMS family HHH motif DDE02_18260 PF00817 impB/mucB/samB family DDE02_18280 PF11842 Domain of unknown function (DUF3362) DDE02_18280 PF04055 Radical SAM superfamily DDE02_18280 PF08497 Radical SAM N-terminal DDE02_18300 PF03358 NADPH-dependent FMN reductase DDE02_18315 PF00291 Pyridoxal-phosphate dependent enzyme DDE02_18345 PF00440 Bacterial regulatory proteins, tetR family DDE02_18370 PF01327 Polypeptide deformylase DDE02_18380 PF17782 DprA winged helix domain DDE02_18380 PF02481 DNA recombination-mediator protein A DDE02_18385 PF01300 Telomere recombination DDE02_18390 PF00892 EamA-like transporter family DDE02_18395 PF00440 Bacterial regulatory proteins, tetR family DDE02_18400 PF07690 Major Facilitator Superfamily DDE02_18410 PF00255 Glutathione peroxidase DDE02_18420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DDE02_18425 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDE02_18425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDE02_18430 PF00231 ATP synthase DDE02_18435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDE02_18435 PF00306 ATP synthase alpha/beta chain, C terminal domain DDE02_18435 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDE02_18440 PF00213 ATP synthase delta (OSCP) subunit DDE02_18445 PF00430 ATP synthase B/B' CF(0) DDE02_18450 PF00137 ATP synthase subunit C DDE02_18455 PF00119 ATP synthase A chain DDE02_18475 PF00005 ABC transporter DDE02_18480 PF00950 ABC 3 transport family DDE02_18485 PF01810 LysE type translocator DDE02_18490 PF04261 Dyp-type peroxidase family DDE02_18495 PF03949 Malic enzyme, NAD binding domain DDE02_18495 PF00390 Malic enzyme, N-terminal domain DDE02_18505 PF03485 Arginyl tRNA synthetase N terminal domain DDE02_18505 PF05746 DALR anticodon binding domain DDE02_18505 PF00750 tRNA synthetases class I (R) DDE02_18525 PF02678 Pirin DDE02_18525 PF05726 Pirin C-terminal cupin domain DDE02_18535 PF03551 Transcriptional regulator PadR-like family DDE02_18540 PF00117 Glutamine amidotransferase class-I DDE02_18540 PF00958 GMP synthase C terminal domain DDE02_18540 PF02540 NAD synthase DDE02_18545 PF04286 Protein of unknown function (DUF445) DDE02_18550 PF07681 DoxX DDE02_18555 PF09335 SNARE associated Golgi protein DDE02_18570 PF13614 AAA domain DDE02_18580 PF01722 BolA-like protein DDE02_18595 PF01648 4'-phosphopantetheinyl transferase superfamily DDE02_18600 PF16363 GDP-mannose 4,6 dehydratase DDE02_18615 PF00501 AMP-binding enzyme DDE02_18615 PF13193 AMP-binding enzyme C-terminal domain DDE02_18615 PF00668 Condensation domain DDE02_18615 PF00550 Phosphopantetheine attachment site DDE02_18615 PF00975 Thioesterase domain DDE02_18620 PF00550 Phosphopantetheine attachment site DDE02_18620 PF08242 Methyltransferase domain DDE02_18620 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_18620 PF00975 Thioesterase domain DDE02_18620 PF16197 Ketoacyl-synthetase C-terminal extension DDE02_18620 PF14765 Polyketide synthase dehydratase DDE02_18620 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_18625 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_18625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_18625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_18630 PF00501 AMP-binding enzyme DDE02_18635 PF00196 Bacterial regulatory proteins, luxR family DDE02_18635 PF03472 Autoinducer binding domain DDE02_18645 PF00765 Autoinducer synthase DDE02_18650 PF00155 Aminotransferase class I and II DDE02_18650 PF00392 Bacterial regulatory proteins, gntR family DDE02_18660 PF01266 FAD dependent oxidoreductase DDE02_18665 PF00324 Amino acid permease DDE02_18670 PF00892 EamA-like transporter family DDE02_18675 PF07690 Major Facilitator Superfamily DDE02_18675 PF00083 Sugar (and other) transporter DDE02_18680 PF00378 Enoyl-CoA hydratase/isomerase DDE02_18685 PF00378 Enoyl-CoA hydratase/isomerase DDE02_18690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDE02_18690 PF02770 Acyl-CoA dehydrogenase, middle domain DDE02_18690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDE02_18695 PF00501 AMP-binding enzyme DDE02_18695 PF13193 AMP-binding enzyme C-terminal domain DDE02_18700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDE02_18700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDE02_18705 PF00171 Aldehyde dehydrogenase family DDE02_18715 PF00324 Amino acid permease DDE02_18720 PF00324 Amino acid permease DDE02_18725 PF01042 Endoribonuclease L-PSP DDE02_18730 PF01168 Alanine racemase, N-terminal domain DDE02_18730 PF00842 Alanine racemase, C-terminal domain DDE02_18735 PF01266 FAD dependent oxidoreductase DDE02_18740 PF01037 Lrp/AsnC ligand binding domain DDE02_18750 PF07715 TonB-dependent Receptor Plug Domain DDE02_18750 PF00593 TonB dependent receptor DDE02_18765 PF00849 RNA pseudouridylate synthase DDE02_18785 PF02525 Flavodoxin-like fold DDE02_18790 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_18790 PF00107 Zinc-binding dehydrogenase DDE02_18810 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_18810 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_18820 PF13737 Transposase DDE domain DDE02_18835 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_18835 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_18870 PF13296 Putative type VI secretion system Rhs element Vgr DDE02_18870 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DDE02_18870 PF04717 Type VI secretion system, phage-baseplate injector DDE02_18885 PF00293 NUDIX domain DDE02_18905 PF00330 Aconitase family (aconitate hydratase) DDE02_18905 PF00694 Aconitase C-terminal domain DDE02_18910 PF00285 Citrate synthase, C-terminal domain DDE02_18920 PF07729 FCD domain DDE02_18920 PF00392 Bacterial regulatory proteins, gntR family DDE02_18930 PF00155 Aminotransferase class I and II DDE02_18935 PF01565 FAD binding domain DDE02_18935 PF09330 D-lactate dehydrogenase, membrane binding DDE02_18940 PF01070 FMN-dependent dehydrogenase DDE02_18945 PF07729 FCD domain DDE02_18945 PF00392 Bacterial regulatory proteins, gntR family DDE02_18950 PF02652 L-lactate permease DDE02_18955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDE02_18955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDE02_18955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDE02_18955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDE02_18960 PF00342 Phosphoglucose isomerase DDE02_18965 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDE02_18965 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDE02_18965 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDE02_18970 PF00483 Nucleotidyl transferase DDE02_18975 PF02397 Bacterial sugar transferase DDE02_18985 PF00535 Glycosyl transferase family 2 DDE02_19000 PF00535 Glycosyl transferase family 2 DDE02_19005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DDE02_19010 PF00483 Nucleotidyl transferase DDE02_19015 PF04321 RmlD substrate binding domain DDE02_19020 PF16363 GDP-mannose 4,6 dehydratase DDE02_19025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDE02_19025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDE02_19025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDE02_19035 PF00535 Glycosyl transferase family 2 DDE02_19035 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DDE02_19045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDE02_19045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDE02_19045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDE02_19050 PF10531 SLBB domain DDE02_19050 PF02563 Polysaccharide biosynthesis/export protein DDE02_19050 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DDE02_19055 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDE02_19060 PF02706 Chain length determinant protein DDE02_19060 PF13614 AAA domain DDE02_19060 PF13807 G-rich domain on putative tyrosine kinase DDE02_19065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_19065 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDE02_19070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_19070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDE02_19075 PF03023 Lipid II flippase MurJ DDE02_19080 PF01510 N-acetylmuramoyl-L-alanine amidase DDE02_19085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DDE02_19085 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DDE02_19095 PF04185 Phosphoesterase family DDE02_19095 PF05506 Domain of unknown function (DUF756) DDE02_19105 PF03725 3' exoribonuclease family, domain 2 DDE02_19105 PF01138 3' exoribonuclease family, domain 1 DDE02_19110 PF00487 Fatty acid desaturase DDE02_19115 PF00175 Oxidoreductase NAD-binding domain DDE02_19120 PF00440 Bacterial regulatory proteins, tetR family DDE02_19125 PF08360 QacR-like protein, C-terminal region DDE02_19125 PF00440 Bacterial regulatory proteins, tetR family DDE02_19130 PF01323 DSBA-like thioredoxin domain DDE02_19140 PF13419 Haloacid dehalogenase-like hydrolase DDE02_19145 PF00106 short chain dehydrogenase DDE02_19160 PF00696 Amino acid kinase family DDE02_19160 PF00583 Acetyltransferase (GNAT) family DDE02_19165 PF09084 NMT1/THI5 like DDE02_19170 PF09084 NMT1/THI5 like DDE02_19175 PF00296 Luciferase-like monooxygenase DDE02_19180 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_19185 PF00005 ABC transporter DDE02_19190 PF00440 Bacterial regulatory proteins, tetR family DDE02_19190 PF08362 YcdC-like protein, C-terminal region DDE02_19195 PF01048 Phosphorylase superfamily DDE02_19205 PF06574 FAD synthetase DDE02_19205 PF01687 Riboflavin kinase DDE02_19210 PF08264 Anticodon-binding domain of tRNA DDE02_19210 PF00133 tRNA synthetases class I (I, L, M and V) DDE02_19210 PF06827 Zinc finger found in FPG and IleRS DDE02_19215 PF01252 Signal peptidase (SPase) II DDE02_19220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDE02_19260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDE02_19265 PF07859 alpha/beta hydrolase fold DDE02_19290 PF01025 GrpE DDE02_19295 PF00012 Hsp70 protein DDE02_19315 PF13406 Transglycosylase SLT domain DDE02_19320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DDE02_19320 PF02222 ATP-grasp domain DDE02_19325 PF00731 AIR carboxylase DDE02_19335 PF02875 Mur ligase family, glutamate ligase domain DDE02_19335 PF08245 Mur ligase middle domain DDE02_19335 PF01225 Mur ligase family, catalytic domain DDE02_19345 PF01569 PAP2 superfamily DDE02_19350 PF03741 Integral membrane protein TerC family DDE02_19360 PF03738 Glutathionylspermidine synthase preATP-grasp DDE02_19365 PF00355 Rieske [2Fe-2S] domain DDE02_19370 PF01979 Amidohydrolase family DDE02_19375 PF00156 Phosphoribosyl transferase domain DDE02_19385 PF10411 Disulfide bond isomerase protein N-terminus DDE02_19385 PF13098 Thioredoxin-like domain DDE02_19390 PF01545 Cation efflux family DDE02_19390 PF16916 Dimerisation domain of Zinc Transporter DDE02_19395 PF02583 Metal-sensitive transcriptional repressor DDE02_19400 PF10396 GTP-binding protein TrmE N-terminus DDE02_19400 PF12631 MnmE helical domain DDE02_19400 PF01926 50S ribosome-binding GTPase DDE02_19405 PF14849 YidC periplasmic domain DDE02_19405 PF02096 60Kd inner membrane protein DDE02_19410 PF01809 Putative membrane protein insertion efficiency factor DDE02_19415 PF00825 Ribonuclease P DDE02_19420 PF00468 Ribosomal protein L34 DDE02_19425 PF00308 Bacterial dnaA protein DDE02_19425 PF11638 DnaA N-terminal domain DDE02_19425 PF08299 Bacterial dnaA protein helix-turn-helix DDE02_19430 PF00712 DNA polymerase III beta subunit, N-terminal domain DDE02_19430 PF02767 DNA polymerase III beta subunit, central domain DDE02_19430 PF02768 DNA polymerase III beta subunit, C-terminal domain DDE02_19435 PF02463 RecF/RecN/SMC N terminal domain DDE02_19440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE02_19440 PF01751 Toprim domain DDE02_19440 PF00986 DNA gyrase B subunit, carboxyl terminus DDE02_19440 PF18053 DNA gyrase B subunit insert domain DDE02_19440 PF00204 DNA gyrase B DDE02_19455 PF00005 ABC transporter DDE02_19455 PF12848 ABC transporter DDE02_19475 PF01521 Iron-sulphur cluster biosynthesis DDE02_19480 PF00561 alpha/beta hydrolase fold DDE02_19485 PF03702 Anhydro-N-acetylmuramic acid kinase DDE02_19490 PF00579 tRNA synthetases class I (W and Y) DDE02_19525 PF00437 Type II/IV secretion system protein DDE02_19525 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DDE02_19575 PF13614 AAA domain DDE02_19580 PF17762 HTH domain found in ParB protein DDE02_19580 PF02195 ParB-like nuclease domain DDE02_19585 PF11798 IMS family HHH motif DDE02_19585 PF11799 impB/mucB/samB family C-terminal domain DDE02_19585 PF00817 impB/mucB/samB family DDE02_19585 PF13438 Domain of unknown function (DUF4113) DDE02_19590 PF00717 Peptidase S24-like DDE02_19630 PF04225 Opacity-associated protein A LysM-like domain DDE02_19630 PF01551 Peptidase family M23 DDE02_19875 PF01435 Peptidase family M48 DDE02_19910 PF00589 Phage integrase family DDE02_19910 PF02899 Phage integrase, N-terminal SAM-like domain DDE02_19955 PF01557 Fumarylacetoacetate (FAA) hydrolase family DDE02_19960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE02_19965 PF01494 FAD binding domain DDE02_19970 PF01144 Coenzyme A transferase DDE02_19975 PF01144 Coenzyme A transferase DDE02_19990 PF12344 Ultra-violet resistance protein B DDE02_19990 PF02151 UvrB/uvrC motif DDE02_19990 PF00271 Helicase conserved C-terminal domain DDE02_19990 PF17757 UvrB interaction domain DDE02_19990 PF04851 Type III restriction enzyme, res subunit DDE02_19995 PF02583 Metal-sensitive transcriptional repressor DDE02_20000 PF01654 Cytochrome bd terminal oxidase subunit I DDE02_20005 PF02322 Cytochrome bd terminal oxidase subunit II DDE02_20020 PF04262 Glutamate-cysteine ligase DDE02_20025 PF02583 Metal-sensitive transcriptional repressor DDE02_20030 PF00107 Zinc-binding dehydrogenase DDE02_20030 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_20035 PF04828 Glutathione-dependent formaldehyde-activating enzyme DDE02_20045 PF00756 Putative esterase DDE02_20050 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_20055 PF17755 UvrA DNA-binding domain DDE02_20105 PF00665 Integrase core domain DDE02_20130 PF00809 Pterin binding enzyme DDE02_20135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDE02_20135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDE02_20135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDE02_20135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDE02_20155 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DDE02_20160 PF01636 Phosphotransferase enzyme family DDE02_20185 PF01131 DNA topoisomerase DDE02_20185 PF01751 Toprim domain DDE02_20185 PF01396 Topoisomerase DNA binding C4 zinc finger DDE02_20260 PF13610 DDE domain DDE02_20270 PF13411 MerR HTH family regulatory protein DDE02_20295 PF13356 Arm DNA-binding domain DDE02_20295 PF00589 Phage integrase family DDE02_20300 PF04151 Bacterial pre-peptidase C-terminal domain DDE02_20310 PF16884 N-terminal domain of oxidoreductase DDE02_20310 PF00107 Zinc-binding dehydrogenase DDE02_20315 PF00440 Bacterial regulatory proteins, tetR family DDE02_20315 PF16925 Tetracyclin repressor-like, C-terminal domain DDE02_20325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_20335 PF00465 Iron-containing alcohol dehydrogenase DDE02_20350 PF00756 Putative esterase DDE02_20355 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_20355 PF00107 Zinc-binding dehydrogenase DDE02_20360 PF02583 Metal-sensitive transcriptional repressor DDE02_20365 PF13737 Transposase DDE domain DDE02_20370 PF00355 Rieske [2Fe-2S] domain DDE02_20385 PF03171 2OG-Fe(II) oxygenase superfamily DDE02_20385 PF14226 non-haem dioxygenase in morphine synthesis N-terminal DDE02_20425 PF03466 LysR substrate binding domain DDE02_20425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_20440 PF03502 Nucleoside-specific channel-forming protein, Tsx DDE02_20445 PF00860 Permease family DDE02_20455 PF03466 LysR substrate binding domain DDE02_20455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_20460 PF01494 FAD binding domain DDE02_20465 PF03561 Allantoicase repeat DDE02_20470 PF04115 Ureidoglycolate lyase DDE02_20480 PF00860 Permease family DDE02_20485 PF00576 HIUase/Transthyretin family DDE02_20515 PF00563 EAL domain DDE02_20515 PF11809 Domain of unknown function (DUF3330) DDE02_20525 PF13411 MerR HTH family regulatory protein DDE02_20530 PF00403 Heavy-metal-associated domain DDE02_20530 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_20530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_20535 PF03203 MerC mercury resistance protein DDE02_20540 PF00403 Heavy-metal-associated domain DDE02_20545 PF02411 MerT mercuric transport protein DDE02_20550 PF00376 MerR family regulatory protein DDE02_20550 PF09278 MerR, DNA binding DDE02_20555 PF13610 DDE domain DDE02_20560 PF02796 Helix-turn-helix domain of resolvase DDE02_20560 PF00239 Resolvase, N terminal domain DDE02_20570 PF13086 AAA domain DDE02_20570 PF13087 AAA domain DDE02_20570 PF13195 Protein of unknown function (DUF4011) DDE02_20575 PF00916 Sulfate permease family DDE02_20575 PF01740 STAS domain DDE02_20580 PF13610 DDE domain DDE02_20635 PF13635 Domain of unknown function (DUF4143) DDE02_20635 PF13173 AAA domain DDE02_20650 PF13737 Transposase DDE domain DDE02_20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_20680 PF03466 LysR substrate binding domain DDE02_20685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE02_20685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDE02_20690 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_20700 PF00005 ABC transporter DDE02_20705 PF13737 Transposase DDE domain DDE02_20720 PF02661 Fic/DOC family DDE02_20735 PF02796 Helix-turn-helix domain of resolvase DDE02_20735 PF00239 Resolvase, N terminal domain DDE02_20765 PF17932 Tetracyclin repressor-like, C-terminal domain DDE02_20765 PF00440 Bacterial regulatory proteins, tetR family DDE02_20790 PF14759 Reductase C-terminal DDE02_20790 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_20795 PF00067 Cytochrome P450 DDE02_20800 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_20805 PF02311 AraC-like ligand binding domain DDE02_20805 PF12833 Helix-turn-helix domain DDE02_20810 PF02796 Helix-turn-helix domain of resolvase DDE02_20810 PF00239 Resolvase, N terminal domain DDE02_20815 PF01695 IstB-like ATP binding protein DDE02_20825 PF13610 DDE domain DDE02_21005 PF03389 MobA/MobL family DDE02_21015 PF01051 Initiator Replication protein DDE02_21025 PF13737 Transposase DDE domain DDE02_21050 PF05973 Phage derived protein Gp49-like (DUF891) DDE02_21075 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_21075 PF00107 Zinc-binding dehydrogenase DDE02_21080 PF00106 short chain dehydrogenase DDE02_21085 PF03466 LysR substrate binding domain DDE02_21085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_21090 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_21090 PF00107 Zinc-binding dehydrogenase DDE02_21095 PF16197 Ketoacyl-synthetase C-terminal extension DDE02_21095 PF14765 Polyketide synthase dehydratase DDE02_21095 PF00109 Beta-ketoacyl synthase, N-terminal domain DDE02_21095 PF08659 KR domain DDE02_21095 PF02801 Beta-ketoacyl synthase, C-terminal domain DDE02_21095 PF00550 Phosphopantetheine attachment site DDE02_21095 PF00698 Acyl transferase domain DDE02_21095 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_21100 PF02583 Metal-sensitive transcriptional repressor DDE02_21105 PF00107 Zinc-binding dehydrogenase DDE02_21105 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_21110 PF00756 Putative esterase DDE02_21125 PF00465 Iron-containing alcohol dehydrogenase DDE02_21135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDE02_21145 PF00440 Bacterial regulatory proteins, tetR family DDE02_21145 PF16925 Tetracyclin repressor-like, C-terminal domain DDE02_21150 PF00107 Zinc-binding dehydrogenase DDE02_21150 PF16884 N-terminal domain of oxidoreductase DDE02_21160 PF04151 Bacterial pre-peptidase C-terminal domain DDE02_21165 PF13356 Arm DNA-binding domain DDE02_21165 PF00589 Phage integrase family DDE02_21190 PF13411 MerR HTH family regulatory protein DDE02_21200 PF13610 DDE domain DDE02_21205 PF01740 STAS domain DDE02_21205 PF00916 Sulfate permease family DDE02_21210 PF13195 Protein of unknown function (DUF4011) DDE02_21210 PF13087 AAA domain DDE02_21210 PF13086 AAA domain DDE02_21220 PF02796 Helix-turn-helix domain of resolvase DDE02_21220 PF00239 Resolvase, N terminal domain DDE02_21225 PF13610 DDE domain DDE02_21230 PF00376 MerR family regulatory protein DDE02_21230 PF09278 MerR, DNA binding DDE02_21235 PF02411 MerT mercuric transport protein DDE02_21240 PF00403 Heavy-metal-associated domain DDE02_21245 PF03203 MerC mercury resistance protein DDE02_21250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDE02_21250 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_21250 PF00403 Heavy-metal-associated domain DDE02_21255 PF13411 MerR HTH family regulatory protein DDE02_21265 PF00563 EAL domain DDE02_21265 PF11809 Domain of unknown function (DUF3330) DDE02_21295 PF00576 HIUase/Transthyretin family DDE02_21300 PF00860 Permease family DDE02_21305 PF13737 Transposase DDE domain DDE02_21310 PF04115 Ureidoglycolate lyase DDE02_21315 PF03561 Allantoicase repeat DDE02_21320 PF01494 FAD binding domain DDE02_21325 PF03466 LysR substrate binding domain DDE02_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_21335 PF00860 Permease family DDE02_21340 PF03502 Nucleoside-specific channel-forming protein, Tsx DDE02_21355 PF03466 LysR substrate binding domain DDE02_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_21390 PF14226 non-haem dioxygenase in morphine synthesis N-terminal DDE02_21390 PF03171 2OG-Fe(II) oxygenase superfamily DDE02_21405 PF00355 Rieske [2Fe-2S] domain DDE02_21410 PF13737 Transposase DDE domain DDE02_21415 PF02583 Metal-sensitive transcriptional repressor DDE02_21420 PF08240 Alcohol dehydrogenase GroES-like domain DDE02_21420 PF00107 Zinc-binding dehydrogenase DDE02_21430 PF13610 DDE domain DDE02_21440 PF01695 IstB-like ATP binding protein DDE02_21445 PF02796 Helix-turn-helix domain of resolvase DDE02_21445 PF00239 Resolvase, N terminal domain DDE02_21450 PF02311 AraC-like ligand binding domain DDE02_21450 PF12833 Helix-turn-helix domain DDE02_21455 PF00111 2Fe-2S iron-sulfur cluster binding domain DDE02_21460 PF00067 Cytochrome P450 DDE02_21465 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDE02_21465 PF14759 Reductase C-terminal DDE02_21490 PF17932 Tetracyclin repressor-like, C-terminal domain DDE02_21490 PF00440 Bacterial regulatory proteins, tetR family DDE02_21520 PF02796 Helix-turn-helix domain of resolvase DDE02_21520 PF00239 Resolvase, N terminal domain DDE02_21545 PF02661 Fic/DOC family DDE02_21560 PF13737 Transposase DDE domain DDE02_21565 PF00005 ABC transporter DDE02_21575 PF00528 Binding-protein-dependent transport system inner membrane component DDE02_21580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE02_21580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDE02_21585 PF03466 LysR substrate binding domain DDE02_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDE02_21615 PF13737 Transposase DDE domain DDE02_21630 PF13635 Domain of unknown function (DUF4143) DDE02_21630 PF13173 AAA domain DDE02_21705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DDE02_21730 PF02661 Fic/DOC family DDE02_21810 PF05973 Phage derived protein Gp49-like (DUF891)