locus-tag class description E3H47_00005 PF00308 Bacterial dnaA protein E3H47_00005 PF11638 DnaA N-terminal domain E3H47_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3H47_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3H47_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3H47_00010 PF02767 DNA polymerase III beta subunit, central domain E3H47_00015 PF02463 RecF/RecN/SMC N terminal domain E3H47_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_00020 PF00204 DNA gyrase B E3H47_00020 PF00986 DNA gyrase B subunit, carboxyl terminus E3H47_00020 PF01751 Toprim domain E3H47_00020 PF18053 DNA gyrase B subunit insert domain E3H47_00025 PF00107 Zinc-binding dehydrogenase E3H47_00025 PF13823 Alcohol dehydrogenase GroES-associated E3H47_00025 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_00035 PF00005 ABC transporter E3H47_00035 PF12848 ABC transporter E3H47_00055 PF01521 Iron-sulphur cluster biosynthesis E3H47_00060 PF00561 alpha/beta hydrolase fold E3H47_00065 PF03702 Anhydro-N-acetylmuramic acid kinase E3H47_00070 PF00579 tRNA synthetases class I (W and Y) E3H47_00085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_00090 PF01252 Signal peptidase (SPase) II E3H47_00095 PF08264 Anticodon-binding domain of tRNA E3H47_00095 PF00133 tRNA synthetases class I (I, L, M and V) E3H47_00095 PF06827 Zinc finger found in FPG and IleRS E3H47_00100 PF06574 FAD synthetase E3H47_00100 PF01687 Riboflavin kinase E3H47_00120 PF00005 ABC transporter E3H47_00125 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_00130 PF00296 Luciferase-like monooxygenase E3H47_00135 PF09084 NMT1/THI5 like E3H47_00140 PF09084 NMT1/THI5 like E3H47_00145 PF00583 Acetyltransferase (GNAT) family E3H47_00145 PF00696 Amino acid kinase family E3H47_00160 PF00106 short chain dehydrogenase E3H47_00165 PF13419 Haloacid dehalogenase-like hydrolase E3H47_00175 PF01323 DSBA-like thioredoxin domain E3H47_00180 PF00440 Bacterial regulatory proteins, tetR family E3H47_00185 PF00440 Bacterial regulatory proteins, tetR family E3H47_00190 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B E3H47_00195 PF00487 Fatty acid desaturase E3H47_00200 PF01138 3' exoribonuclease family, domain 1 E3H47_00200 PF03725 3' exoribonuclease family, domain 2 E3H47_00210 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3H47_00210 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3H47_00220 PF03023 Lipid II flippase MurJ E3H47_00235 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3H47_00235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_00240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3H47_00240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_00245 PF13807 G-rich domain on putative tyrosine kinase E3H47_00245 PF02706 Chain length determinant protein E3H47_00245 PF13614 AAA domain E3H47_00250 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3H47_00255 PF10531 SLBB domain E3H47_00255 PF02563 Polysaccharide biosynthesis/export protein E3H47_00255 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E3H47_00260 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3H47_00260 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3H47_00260 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3H47_00265 PF01370 NAD dependent epimerase/dehydratase family E3H47_00285 PF00534 Glycosyl transferases group 1 E3H47_00305 PF00534 Glycosyl transferases group 1 E3H47_00305 PF13477 Glycosyl transferase 4-like E3H47_00310 PF02397 Bacterial sugar transferase E3H47_00315 PF14602 Hexapeptide repeat of succinyl-transferase E3H47_00315 PF17836 PglD N-terminal domain E3H47_00315 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_00320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3H47_00325 PF02719 Polysaccharide biosynthesis protein E3H47_00330 PF00483 Nucleotidyl transferase E3H47_00335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3H47_00335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3H47_00335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3H47_00340 PF00342 Phosphoglucose isomerase E3H47_00345 PF16363 GDP-mannose 4,6 dehydratase E3H47_00350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3H47_00350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3H47_00350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3H47_00350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3H47_00365 PF01722 BolA-like protein E3H47_00380 PF09335 SNARE associated Golgi protein E3H47_00385 PF00958 GMP synthase C terminal domain E3H47_00385 PF02540 NAD synthase E3H47_00385 PF00117 Glutamine amidotransferase class-I E3H47_00390 PF05726 Pirin C-terminal cupin domain E3H47_00390 PF02678 Pirin E3H47_00395 PF02798 Glutathione S-transferase, N-terminal domain E3H47_00395 PF00043 Glutathione S-transferase, C-terminal domain E3H47_00405 PF03485 Arginyl tRNA synthetase N terminal domain E3H47_00405 PF05746 DALR anticodon binding domain E3H47_00405 PF00750 tRNA synthetases class I (R) E3H47_00415 PF03949 Malic enzyme, NAD binding domain E3H47_00415 PF00390 Malic enzyme, N-terminal domain E3H47_00420 PF04717 Type VI secretion system, phage-baseplate injector E3H47_00480 PF04261 Dyp-type peroxidase family E3H47_00485 PF00950 ABC 3 transport family E3H47_00490 PF00005 ABC transporter E3H47_00510 PF00119 ATP synthase A chain E3H47_00515 PF00137 ATP synthase subunit C E3H47_00520 PF00430 ATP synthase B/B' CF(0) E3H47_00525 PF00213 ATP synthase delta (OSCP) subunit E3H47_00530 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3H47_00530 PF00306 ATP synthase alpha/beta chain, C terminal domain E3H47_00530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3H47_00535 PF00231 ATP synthase E3H47_00540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3H47_00540 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3H47_00545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3H47_00550 PF00171 Aldehyde dehydrogenase family E3H47_00565 PF00255 Glutathione peroxidase E3H47_00580 PF00892 EamA-like transporter family E3H47_00585 PF01300 Telomere recombination E3H47_00590 PF02481 DNA recombination-mediator protein A E3H47_00590 PF17782 DprA winged helix domain E3H47_00595 PF01476 LysM domain E3H47_00600 PF01327 Polypeptide deformylase E3H47_00640 PF07690 Major Facilitator Superfamily E3H47_00650 PF07690 Major Facilitator Superfamily E3H47_00655 PF11842 Domain of unknown function (DUF3362) E3H47_00655 PF04055 Radical SAM superfamily E3H47_00655 PF08497 Radical SAM N-terminal E3H47_00670 PF11799 impB/mucB/samB family C-terminal domain E3H47_00670 PF11798 IMS family HHH motif E3H47_00670 PF00817 impB/mucB/samB family E3H47_00675 PF01183 Glycosyl hydrolases family 25 E3H47_00680 PF07690 Major Facilitator Superfamily E3H47_00690 PF03641 Possible lysine decarboxylase E3H47_00695 PF03741 Integral membrane protein TerC family E3H47_00695 PF03471 Transporter associated domain E3H47_00700 PF02810 SEC-C motif E3H47_00705 PF03458 UPF0126 domain E3H47_00710 PF07690 Major Facilitator Superfamily E3H47_00715 PF00521 DNA gyrase/topoisomerase IV, subunit A E3H47_00715 PF03989 DNA gyrase C-terminal domain, beta-propeller E3H47_00720 PF13193 AMP-binding enzyme C-terminal domain E3H47_00720 PF00501 AMP-binding enzyme E3H47_00735 PF00719 Inorganic pyrophosphatase E3H47_00740 PF03573 outer membrane porin, OprD family E3H47_00750 PF01078 Magnesium chelatase, subunit ChlI E3H47_00750 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3H47_00760 PF00543 Nitrogen regulatory protein P-II E3H47_00765 PF00909 Ammonium Transporter Family E3H47_00770 PF03477 ATP cone domain E3H47_00775 PF01872 RibD C-terminal domain E3H47_00775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3H47_00785 PF00677 Lumazine binding domain E3H47_00800 PF02789 Cytosol aminopeptidase family, N-terminal domain E3H47_00800 PF00883 Cytosol aminopeptidase family, catalytic domain E3H47_00805 PF03739 Lipopolysaccharide export system permease LptF/LptG E3H47_00810 PF03739 Lipopolysaccharide export system permease LptF/LptG E3H47_00815 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3H47_00815 PF01676 Metalloenzyme superfamily E3H47_00820 PF01471 Putative peptidoglycan binding domain E3H47_00820 PF03572 Peptidase family S41 E3H47_00820 PF17820 PDZ domain E3H47_00825 PF02954 Bacterial regulatory protein, Fis family E3H47_00825 PF00072 Response regulator receiver domain E3H47_00825 PF00158 Sigma-54 interaction domain E3H47_00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_00830 PF00512 His Kinase A (phospho-acceptor) domain E3H47_00830 PF00989 PAS fold E3H47_00835 PF00196 Bacterial regulatory proteins, luxR family E3H47_00835 PF00072 Response regulator receiver domain E3H47_00840 PF00768 D-alanyl-D-alanine carboxypeptidase E3H47_00845 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_00850 PF03447 Homoserine dehydrogenase, NAD binding domain E3H47_00850 PF00742 Homoserine dehydrogenase E3H47_00850 PF01842 ACT domain E3H47_00860 PF00589 Phage integrase family E3H47_00860 PF02899 Phage integrase, N-terminal SAM-like domain E3H47_00870 PF07664 Ferrous iron transport protein B C terminus E3H47_00870 PF02421 Ferrous iron transport protein B E3H47_00870 PF07670 Nucleoside recognition E3H47_00880 PF08245 Mur ligase middle domain E3H47_00880 PF02875 Mur ligase family, glutamate ligase domain E3H47_00885 PF01098 Cell cycle protein E3H47_00895 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3H47_00900 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3H47_00905 PF00149 Calcineurin-like phosphoesterase E3H47_00910 PF00293 NUDIX domain E3H47_00915 PF13667 ThiC-associated domain E3H47_00915 PF01964 Radical SAM ThiC family E3H47_00925 PF02321 Outer membrane efflux protein E3H47_00930 PF01895 PhoU domain E3H47_00935 PF04362 Bacterial Fe(2+) trafficking E3H47_00940 PF00206 Lyase E3H47_00940 PF14698 Argininosuccinate lyase C-terminal E3H47_00945 PF06580 Histidine kinase E3H47_00945 PF07694 5TMR of 5TMR-LYT E3H47_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_00950 PF00072 Response regulator receiver domain E3H47_00950 PF04397 LytTr DNA-binding domain E3H47_00955 PF03900 Porphobilinogen deaminase, C-terminal domain E3H47_00955 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3H47_00980 PF00816 H-NS histone family E3H47_00995 PF03958 Bacterial type II/III secretion system short domain E3H47_00995 PF00263 Bacterial type II and III secretion system protein E3H47_01000 PF12401 Protein of unknown function (DUF2662) E3H47_01000 PF00498 FHA domain E3H47_01005 PF13419 Haloacid dehalogenase-like hydrolase E3H47_01010 PF04715 Anthranilate synthase component I, N terminal region E3H47_01010 PF00425 chorismate binding enzyme E3H47_01035 PF03143 Elongation factor Tu C-terminal domain E3H47_01035 PF00009 Elongation factor Tu GTP binding domain E3H47_01035 PF03144 Elongation factor Tu domain 2 E3H47_01045 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3H47_01050 PF00467 KOW motif E3H47_01050 PF02357 Transcription termination factor nusG E3H47_01055 PF03946 Ribosomal protein L11, N-terminal domain E3H47_01055 PF00298 Ribosomal protein L11, RNA binding domain E3H47_01060 PF00687 Ribosomal protein L1p/L10e family E3H47_01065 PF00466 Ribosomal protein L10 E3H47_01070 PF00542 Ribosomal protein L7/L12 C-terminal domain E3H47_01070 PF16320 Ribosomal protein L7/L12 dimerisation domain E3H47_01075 PF10385 RNA polymerase beta subunit external 1 domain E3H47_01075 PF04565 RNA polymerase Rpb2, domain 3 E3H47_01075 PF04561 RNA polymerase Rpb2, domain 2 E3H47_01075 PF00562 RNA polymerase Rpb2, domain 6 E3H47_01075 PF04560 RNA polymerase Rpb2, domain 7 E3H47_01075 PF04563 RNA polymerase beta subunit E3H47_01080 PF05000 RNA polymerase Rpb1, domain 4 E3H47_01080 PF00623 RNA polymerase Rpb1, domain 2 E3H47_01080 PF04997 RNA polymerase Rpb1, domain 1 E3H47_01080 PF04998 RNA polymerase Rpb1, domain 5 E3H47_01080 PF04983 RNA polymerase Rpb1, domain 3 E3H47_01095 PF03553 Na+/H+ antiporter family E3H47_01095 PF13726 Na+-H+ antiporter family E3H47_01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_01105 PF00183 Hsp90 protein E3H47_01125 PF01323 DSBA-like thioredoxin domain E3H47_01140 PF00108 Thiolase, N-terminal domain E3H47_01140 PF02803 Thiolase, C-terminal domain E3H47_01145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3H47_01145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3H47_01145 PF00378 Enoyl-CoA hydratase/isomerase E3H47_01155 PF08459 UvrC Helix-hairpin-helix N-terminal E3H47_01155 PF02151 UvrB/uvrC motif E3H47_01155 PF01541 GIY-YIG catalytic domain E3H47_01165 PF01066 CDP-alcohol phosphatidyltransferase E3H47_01170 PF00005 ABC transporter E3H47_01170 PF00664 ABC transporter transmembrane region E3H47_01195 PF13533 Biotin-lipoyl like E3H47_01200 PF03652 Holliday junction resolvase E3H47_01205 PF02622 Uncharacterized ACR, COG1678 E3H47_01210 PF02463 RecF/RecN/SMC N terminal domain E3H47_01215 PF06865 Pyrimidine/purine nucleoside phosphorylase E3H47_01220 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3H47_01220 PF00588 SpoU rRNA Methylase family E3H47_01225 PF00892 EamA-like transporter family E3H47_01230 PF01121 Dephospho-CoA kinase E3H47_01235 PF06750 Bacterial Peptidase A24 N-terminal domain E3H47_01235 PF01478 Type IV leader peptidase family E3H47_01240 PF00482 Type II secretion system (T2SS), protein F E3H47_01245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3H47_01245 PF00437 Type II/IV secretion system protein E3H47_01250 PF00121 Triosephosphate isomerase E3H47_01255 PF03840 Preprotein translocase SecG subunit E3H47_01275 PF17384 RimP C-terminal SH3 domain E3H47_01275 PF02576 RimP N-terminal domain E3H47_01280 PF08529 NusA N-terminal domain E3H47_01280 PF13184 NusA-like KH domain E3H47_01280 PF00575 S1 RNA binding domain E3H47_01285 PF08364 Bacterial translation initiation factor IF-2 associated region E3H47_01285 PF04760 Translation initiation factor IF-2, N-terminal region E3H47_01285 PF11987 Translation-initiation factor 2 E3H47_01285 PF00009 Elongation factor Tu GTP binding domain E3H47_01290 PF02033 Ribosome-binding factor A E3H47_01300 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) E3H47_01310 PF00361 Proton-conducting membrane transporter E3H47_01315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3H47_01320 PF13244 Domain of unknown function (DUF4040) E3H47_01320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3H47_01320 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter E3H47_01320 PF00361 Proton-conducting membrane transporter E3H47_01335 PF01502 Phosphoribosyl-AMP cyclohydrolase E3H47_01340 PF03109 ABC1 family E3H47_01350 PF01209 ubiE/COQ5 methyltransferase family E3H47_01360 PF03976 Polyphosphate kinase 2 (PPK2) E3H47_01370 PF17946 RecC C-terminal domain E3H47_01375 PF13361 UvrD-like helicase C-terminal domain E3H47_01375 PF00580 UvrD/REP helicase N-terminal domain E3H47_01375 PF12705 PD-(D/E)XK nuclease superfamily E3H47_01380 PF13538 UvrD-like helicase C-terminal domain E3H47_01385 PF00312 Ribosomal protein S15 E3H47_01390 PF00013 KH domain E3H47_01390 PF01138 3' exoribonuclease family, domain 1 E3H47_01390 PF03725 3' exoribonuclease family, domain 2 E3H47_01390 PF00575 S1 RNA binding domain E3H47_01390 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3H47_01395 PF01544 CorA-like Mg2+ transporter protein E3H47_01405 PF01556 DnaJ C terminal domain E3H47_01405 PF00226 DnaJ domain E3H47_01415 PF01430 Hsp33 protein E3H47_01420 PF02254 TrkA-N domain E3H47_01420 PF00999 Sodium/hydrogen exchanger family E3H47_01425 PF17764 3′ DNA-binding domain (3′BD) E3H47_01425 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3H47_01425 PF00271 Helicase conserved C-terminal domain E3H47_01425 PF00270 DEAD/DEAH box helicase E3H47_01425 PF18074 Primosomal protein N C-terminal domain E3H47_01430 PF00482 Type II secretion system (T2SS), protein F E3H47_01435 PF07963 Prokaryotic N-terminal methylation motif E3H47_01435 PF08334 Type II secretion system (T2SS), protein G E3H47_01445 PF00795 Carbon-nitrogen hydrolase E3H47_01450 PF03471 Transporter associated domain E3H47_01450 PF00571 CBS domain E3H47_01460 PF01206 Sulfurtransferase TusA E3H47_01480 PF01177 Asp/Glu/Hydantoin racemase E3H47_01490 PF00762 Ferrochelatase E3H47_01495 PF00753 Metallo-beta-lactamase superfamily E3H47_01505 PF03884 DNA gyrase inhibitor YacG E3H47_01515 PF13247 4Fe-4S dicluster domain E3H47_01515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3H47_01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_01530 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3H47_01535 PF01197 Ribosomal protein L31 E3H47_01540 PF03109 ABC1 family E3H47_01545 PF01554 MatE E3H47_01555 PF06969 HemN C-terminal domain E3H47_01555 PF04055 Radical SAM superfamily E3H47_01560 PF01810 LysE type translocator E3H47_01585 PF00501 AMP-binding enzyme E3H47_01585 PF13193 AMP-binding enzyme C-terminal domain E3H47_01590 PF12111 Polyribonucleotide phosphorylase C terminal E3H47_01590 PF10150 Ribonuclease E/G family E3H47_01590 PF00575 S1 RNA binding domain E3H47_01600 PF01479 S4 domain E3H47_01600 PF00849 RNA pseudouridylate synthase E3H47_01605 PF13419 Haloacid dehalogenase-like hydrolase E3H47_01610 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3H47_01615 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3H47_01615 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation E3H47_01620 PF07836 DmpG-like communication domain E3H47_01620 PF00682 HMGL-like E3H47_01635 PF00561 alpha/beta hydrolase fold E3H47_01645 PF03466 LysR substrate binding domain E3H47_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_01650 PF00355 Rieske [2Fe-2S] domain E3H47_01650 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E3H47_01655 PF00866 Ring hydroxylating beta subunit E3H47_01660 PF00355 Rieske [2Fe-2S] domain E3H47_01665 PF00106 short chain dehydrogenase E3H47_01670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3H47_01675 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_01675 PF14759 Reductase C-terminal E3H47_01690 PF12706 Beta-lactamase superfamily domain E3H47_01700 PF06628 Catalase-related immune-responsive E3H47_01700 PF00199 Catalase E3H47_01710 PF18158 Adaptive response protein AidB N-terminal domain E3H47_01710 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_01710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_01720 PF02896 PEP-utilising enzyme, TIM barrel domain E3H47_01720 PF00391 PEP-utilising enzyme, mobile domain E3H47_01720 PF01590 GAF domain E3H47_01720 PF05524 PEP-utilising enzyme, N-terminal E3H47_01725 PF00293 NUDIX domain E3H47_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_01735 PF03466 LysR substrate binding domain E3H47_01740 PF00330 Aconitase family (aconitate hydratase) E3H47_01745 PF00694 Aconitase C-terminal domain E3H47_01755 PF00180 Isocitrate/isopropylmalate dehydrogenase E3H47_01765 PF01176 Translation initiation factor 1A / IF-1 E3H47_01775 PF01416 tRNA pseudouridine synthase E3H47_01795 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3H47_01795 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3H47_01810 PF03279 Bacterial lipid A biosynthesis acyltransferase E3H47_01815 PF01661 Macro domain E3H47_01840 PF08272 Topoisomerase I zinc-ribbon-like E3H47_01840 PF01131 DNA topoisomerase E3H47_01840 PF01751 Toprim domain E3H47_01840 PF01396 Topoisomerase DNA binding C4 zinc finger E3H47_01855 PF02595 Glycerate kinase family E3H47_01860 PF00580 UvrD/REP helicase N-terminal domain E3H47_01860 PF13361 UvrD-like helicase C-terminal domain E3H47_01865 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) E3H47_01880 PF00999 Sodium/hydrogen exchanger family E3H47_01880 PF02254 TrkA-N domain E3H47_01885 PF00471 Ribosomal protein L33 E3H47_01890 PF00830 Ribosomal L28 family E3H47_01895 PF00171 Aldehyde dehydrogenase family E3H47_01900 PF08360 QacR-like protein, C-terminal region E3H47_01900 PF00440 Bacterial regulatory proteins, tetR family E3H47_01905 PF01842 ACT domain E3H47_01905 PF00551 Formyl transferase E3H47_01915 PF01618 MotA/TolQ/ExbB proton channel family E3H47_01925 PF01625 Peptide methionine sulfoxide reductase E3H47_01940 PF00186 Dihydrofolate reductase E3H47_01945 PF00303 Thymidylate synthase E3H47_01960 PF05401 Nodulation protein S (NodS) E3H47_01980 PF01790 Prolipoprotein diacylglyceryl transferase E3H47_01995 PF00902 Sec-independent protein translocase protein (TatC) E3H47_02000 PF02416 mttA/Hcf106 family E3H47_02005 PF02416 mttA/Hcf106 family E3H47_02015 PF01725 Ham1 family E3H47_02025 PF00561 alpha/beta hydrolase fold E3H47_02025 PF07021 Methionine biosynthesis protein MetW E3H47_02030 PF00561 alpha/beta hydrolase fold E3H47_02035 PF00682 HMGL-like E3H47_02035 PF08502 LeuA allosteric (dimerisation) domain E3H47_02040 PF18331 PKHD-type hydroxylase C-terminal domain E3H47_02040 PF13640 2OG-Fe(II) oxygenase superfamily E3H47_02045 PF07715 TonB-dependent Receptor Plug Domain E3H47_02045 PF00593 TonB dependent receptor E3H47_02050 PF05698 Bacterial trigger factor protein (TF) C-terminus E3H47_02050 PF05697 Bacterial trigger factor protein (TF) E3H47_02050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_02055 PF00574 Clp protease E3H47_02060 PF10431 C-terminal, D2-small domain, of ClpB protein E3H47_02060 PF07724 AAA domain (Cdc48 subfamily) E3H47_02060 PF06689 ClpX C4-type zinc finger E3H47_02070 PF05681 Fumarate hydratase (Fumerase) E3H47_02070 PF05683 Fumarase C-terminus E3H47_02080 PF01515 Phosphate acetyl/butaryl transferase E3H47_02080 PF07085 DRTGG domain E3H47_02085 PF00871 Acetokinase family E3H47_02095 PF00171 Aldehyde dehydrogenase family E3H47_02100 PF00561 alpha/beta hydrolase fold E3H47_02110 PF00933 Glycosyl hydrolase family 3 N terminal domain E3H47_02115 PF11818 C-terminal domain of tail specific protease (DUF3340) E3H47_02115 PF00595 PDZ domain E3H47_02115 PF03572 Peptidase family S41 E3H47_02115 PF17804 Tail specific protease N-terminal domain E3H47_02120 PF00534 Glycosyl transferases group 1 E3H47_02120 PF13439 Glycosyltransferase Family 4 E3H47_02125 PF01569 PAP2 superfamily E3H47_02130 PF04384 Iron-sulphur cluster assembly E3H47_02135 PF00334 Nucleoside diphosphate kinase E3H47_02140 PF04055 Radical SAM superfamily E3H47_02150 PF13464 Domain of unknown function (DUF4115) E3H47_02155 PF04551 GcpE protein E3H47_02160 PF13393 Histidyl-tRNA synthetase E3H47_02160 PF03129 Anticodon binding domain E3H47_02170 PF01011 PQQ enzyme repeat E3H47_02170 PF13360 PQQ-like domain E3H47_02175 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3H47_02175 PF01926 50S ribosome-binding GTPase E3H47_02185 PF07549 SecD/SecF GG Motif E3H47_02185 PF02355 Protein export membrane protein E3H47_02190 PF02355 Protein export membrane protein E3H47_02190 PF13721 SecD export protein N-terminal TM region E3H47_02190 PF07549 SecD/SecF GG Motif E3H47_02195 PF02699 Preprotein translocase subunit E3H47_02200 PF01702 Queuine tRNA-ribosyltransferase E3H47_02205 PF04011 LemA family E3H47_02215 PF02547 Queuosine biosynthesis protein E3H47_02225 PF13426 PAS domain E3H47_02225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_02225 PF00512 His Kinase A (phospho-acceptor) domain E3H47_02225 PF00072 Response regulator receiver domain E3H47_02225 PF08448 PAS fold E3H47_02230 PF08335 GlnD PII-uridylyltransferase E3H47_02230 PF03710 Glutamate-ammonia ligase adenylyltransferase E3H47_02235 PF01063 Amino-transferase class IV E3H47_02245 PF01522 Polysaccharide deacetylase E3H47_02260 PF16363 GDP-mannose 4,6 dehydratase E3H47_02265 PF04321 RmlD substrate binding domain E3H47_02270 PF00483 Nucleotidyl transferase E3H47_02275 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E3H47_02280 PF00535 Glycosyl transferase family 2 E3H47_02295 PF02938 GAD domain E3H47_02295 PF00152 tRNA synthetases class II (D, K and N) E3H47_02295 PF01336 OB-fold nucleic acid binding domain E3H47_02305 PF07715 TonB-dependent Receptor Plug Domain E3H47_02305 PF00593 TonB dependent receptor E3H47_02335 PF02321 Outer membrane efflux protein E3H47_02340 PF02687 FtsX-like permease family E3H47_02340 PF00005 ABC transporter E3H47_02340 PF12704 MacB-like periplasmic core domain E3H47_02345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3H47_02360 PF09334 tRNA synthetases class I (M) E3H47_02360 PF13603 Leucyl-tRNA synthetase, Domain 2 E3H47_02360 PF00133 tRNA synthetases class I (I, L, M and V) E3H47_02360 PF08264 Anticodon-binding domain of tRNA E3H47_02370 PF00205 Thiamine pyrophosphate enzyme, central domain E3H47_02370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3H47_02370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3H47_02375 PF10369 Small subunit of acetolactate synthase E3H47_02380 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3H47_02380 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3H47_02385 PF00990 Diguanylate cyclase, GGDEF domain E3H47_02385 PF03707 Bacterial signalling protein N terminal repeat E3H47_02385 PF00563 EAL domain E3H47_02390 PF00009 Elongation factor Tu GTP binding domain E3H47_02390 PF03144 Elongation factor Tu domain 2 E3H47_02390 PF16658 Class II release factor RF3, C-terminal domain E3H47_02405 PF01026 TatD related DNase E3H47_02410 PF00694 Aconitase C-terminal domain E3H47_02410 PF00330 Aconitase family (aconitate hydratase) E3H47_02415 PF00899 ThiF family E3H47_02420 PF01207 Dihydrouridine synthase (Dus) E3H47_02430 PF07690 Major Facilitator Superfamily E3H47_02435 PF00892 EamA-like transporter family E3H47_02440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E3H47_02440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E3H47_02445 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E3H47_02450 PF02233 NAD(P) transhydrogenase beta subunit E3H47_02460 PF01261 Xylose isomerase-like TIM barrel E3H47_02465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3H47_02465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3H47_02470 PF00378 Enoyl-CoA hydratase/isomerase E3H47_02475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3H47_02475 PF00072 Response regulator receiver domain E3H47_02475 PF01627 Hpt domain E3H47_02475 PF00512 His Kinase A (phospho-acceptor) domain E3H47_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_02475 PF00672 HAMP domain E3H47_02480 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_02490 PF05958 tRNA (Uracil-5-)-methyltransferase E3H47_02495 PF13291 ACT domain E3H47_02495 PF04607 Region found in RelA / SpoT proteins E3H47_02495 PF02824 TGS domain E3H47_02505 PF03819 MazG nucleotide pyrophosphohydrolase domain E3H47_02515 PF01743 Poly A polymerase head domain E3H47_02515 PF12626 Polymerase A arginine-rich C-terminus E3H47_02515 PF12627 Probable RNA and SrmB- binding site of polymerase A E3H47_02520 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3H47_02525 PF02548 Ketopantoate hydroxymethyltransferase E3H47_02530 PF02569 Pantoate-beta-alanine ligase E3H47_02535 PF03668 P-loop ATPase protein family E3H47_02540 PF00381 PTS HPr component phosphorylation site E3H47_02545 PF04751 Protein of unknown function (DUF615) E3H47_02560 PF13193 AMP-binding enzyme C-terminal domain E3H47_02560 PF00501 AMP-binding enzyme E3H47_02565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3H47_02565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3H47_02565 PF02824 TGS domain E3H47_02565 PF03129 Anticodon binding domain E3H47_02570 PF00707 Translation initiation factor IF-3, C-terminal domain E3H47_02570 PF05198 Translation initiation factor IF-3, N-terminal domain E3H47_02575 PF00011 Hsp20/alpha crystallin family E3H47_02580 PF00043 Glutathione S-transferase, C-terminal domain E3H47_02580 PF02798 Glutathione S-transferase, N-terminal domain E3H47_02585 PF09335 SNARE associated Golgi protein E3H47_02600 PF01632 Ribosomal protein L35 E3H47_02605 PF00453 Ribosomal protein L20 E3H47_02620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3H47_02620 PF01409 tRNA synthetases class II core domain (F) E3H47_02625 PF03147 Ferredoxin-fold anticodon binding domain E3H47_02625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3H47_02625 PF03483 B3/4 domain E3H47_02625 PF03484 tRNA synthetase B5 domain E3H47_02625 PF01588 Putative tRNA binding domain E3H47_02630 PF00216 Bacterial DNA-binding protein E3H47_02640 PF07497 Rho termination factor, RNA-binding domain E3H47_02640 PF07498 Rho termination factor, N-terminal domain E3H47_02640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3H47_02645 PF00085 Thioredoxin E3H47_02650 PF02541 Ppx/GppA phosphatase family E3H47_02655 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3H47_02660 PF11734 TilS substrate C-terminal domain E3H47_02660 PF09179 TilS substrate binding domain E3H47_02660 PF01171 PP-loop family E3H47_02665 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3H47_02665 PF03807 NADP oxidoreductase coenzyme F420-dependent E3H47_02670 PF02325 YGGT family E3H47_02675 PF01612 3'-5' exonuclease E3H47_02675 PF00476 DNA polymerase family A E3H47_02675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3H47_02675 PF01367 5'-3' exonuclease, C-terminal SAM fold E3H47_02695 PF00437 Type II/IV secretion system protein E3H47_02700 PF02566 OsmC-like protein E3H47_02705 PF00795 Carbon-nitrogen hydrolase E3H47_02755 PF04386 Stringent starvation protein B E3H47_02760 PF02798 Glutathione S-transferase, N-terminal domain E3H47_02760 PF00043 Glutathione S-transferase, C-terminal domain E3H47_02765 PF00380 Ribosomal protein S9/S16 E3H47_02770 PF00572 Ribosomal protein L13 E3H47_02780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3H47_02785 PF00398 Ribosomal RNA adenine dimethylase E3H47_02790 PF00149 Calcineurin-like phosphoesterase E3H47_02800 PF04172 LrgB-like family E3H47_02810 PF16360 GTP-binding GTPase Middle Region E3H47_02810 PF13167 GTP-binding GTPase N-terminal E3H47_02810 PF01926 50S ribosome-binding GTPase E3H47_02820 PF13091 PLD-like domain E3H47_02825 PF00149 Calcineurin-like phosphoesterase E3H47_02825 PF10518 TAT (twin-arginine translocation) pathway signal sequence E3H47_02830 PF00083 Sugar (and other) transporter E3H47_02830 PF07690 Major Facilitator Superfamily E3H47_02835 PF03006 Haemolysin-III related E3H47_02845 PF01734 Patatin-like phospholipase E3H47_02855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3H47_02855 PF00378 Enoyl-CoA hydratase/isomerase E3H47_02855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3H47_02860 PF00108 Thiolase, N-terminal domain E3H47_02860 PF02803 Thiolase, C-terminal domain E3H47_02865 PF02311 AraC-like ligand binding domain E3H47_02865 PF12833 Helix-turn-helix domain E3H47_02870 PF02515 CoA-transferase family III E3H47_02875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3H47_02875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3H47_02885 PF00175 Oxidoreductase NAD-binding domain E3H47_02885 PF00667 FAD binding domain E3H47_02885 PF00258 Flavodoxin E3H47_02895 PF12805 FUSC-like inner membrane protein yccS E3H47_02900 PF07690 Major Facilitator Superfamily E3H47_02915 PF03616 Sodium/glutamate symporter E3H47_02920 PF01235 Sodium:alanine symporter family E3H47_02925 PF02417 Chromate transporter E3H47_02930 PF01734 Patatin-like phospholipase E3H47_02935 PF01144 Coenzyme A transferase E3H47_02940 PF01144 Coenzyme A transferase E3H47_02945 PF00682 HMGL-like E3H47_02950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3H47_02950 PF00364 Biotin-requiring enzyme E3H47_02950 PF00289 Biotin carboxylase, N-terminal domain E3H47_02950 PF02785 Biotin carboxylase C-terminal domain E3H47_02955 PF00378 Enoyl-CoA hydratase/isomerase E3H47_02960 PF01039 Carboxyl transferase domain E3H47_02965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_02965 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_02965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_02970 PF00440 Bacterial regulatory proteins, tetR family E3H47_02975 PF13193 AMP-binding enzyme C-terminal domain E3H47_02975 PF00501 AMP-binding enzyme E3H47_02980 PF05992 SbmA/BacA-like family E3H47_02990 PF00892 EamA-like transporter family E3H47_03005 PF02637 GatB domain E3H47_03005 PF02934 GatB/GatE catalytic domain E3H47_03010 PF01425 Amidase E3H47_03015 PF02686 Glu-tRNAGln amidotransferase C subunit E3H47_03025 PF04085 rod shape-determining protein MreC E3H47_03030 PF04093 rod shape-determining protein MreD E3H47_03035 PF02545 Maf-like protein E3H47_03040 PF10150 Ribonuclease E/G family E3H47_03040 PF00575 S1 RNA binding domain E3H47_03045 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain E3H47_03045 PF06974 Protein of unknown function (DUF1298) E3H47_03050 PF01507 Phosphoadenosine phosphosulfate reductase family E3H47_03075 PF00512 His Kinase A (phospho-acceptor) domain E3H47_03075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_03075 PF08521 Two-component sensor kinase N-terminal E3H47_03080 PF00486 Transcriptional regulatory protein, C terminal E3H47_03080 PF00072 Response regulator receiver domain E3H47_03085 PF00884 Sulfatase E3H47_03085 PF08019 Phosphoethanolamine transferase EptA/EptB E3H47_03095 PF00324 Amino acid permease E3H47_03100 PF04303 PrpF protein E3H47_03105 PF03831 PhnA domain E3H47_03105 PF08274 PhnA Zinc-Ribbon E3H47_03110 PF00348 Polyprenyl synthetase E3H47_03125 PF00580 UvrD/REP helicase N-terminal domain E3H47_03125 PF13361 UvrD-like helicase C-terminal domain E3H47_03140 PF01695 IstB-like ATP binding protein E3H47_03155 PF13737 Transposase DDE domain E3H47_03190 PF01734 Patatin-like phospholipase E3H47_03210 PF14765 Polyketide synthase dehydratase E3H47_03210 PF00109 Beta-ketoacyl synthase, N-terminal domain E3H47_03210 PF00107 Zinc-binding dehydrogenase E3H47_03210 PF08659 KR domain E3H47_03210 PF02801 Beta-ketoacyl synthase, C-terminal domain E3H47_03210 PF16197 Ketoacyl-synthetase C-terminal extension E3H47_03210 PF00550 Phosphopantetheine attachment site E3H47_03210 PF00698 Acyl transferase domain E3H47_03210 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_03215 PF16925 Tetracyclin repressor-like, C-terminal domain E3H47_03215 PF00440 Bacterial regulatory proteins, tetR family E3H47_03230 PF13419 Haloacid dehalogenase-like hydrolase E3H47_03235 PF00909 Ammonium Transporter Family E3H47_03240 PF00005 ABC transporter E3H47_03245 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_03250 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_03255 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3H47_03280 PF08264 Anticodon-binding domain of tRNA E3H47_03280 PF10458 Valyl tRNA synthetase tRNA binding arm E3H47_03280 PF00133 tRNA synthetases class I (I, L, M and V) E3H47_03295 PF01906 Putative heavy-metal-binding E3H47_03300 PF01906 Putative heavy-metal-binding E3H47_03305 PF02321 Outer membrane efflux protein E3H47_03310 PF00873 AcrB/AcrD/AcrF family E3H47_03315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3H47_03315 PF00529 HlyD membrane-fusion protein of T1SS E3H47_03320 PF01569 PAP2 superfamily E3H47_03330 PF00348 Polyprenyl synthetase E3H47_03335 PF00829 Ribosomal prokaryotic L21 protein E3H47_03340 PF01016 Ribosomal L27 protein E3H47_03345 PF03548 Outer membrane lipoprotein carrier protein LolA E3H47_03350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3H47_03350 PF02403 Seryl-tRNA synthetase N-terminal domain E3H47_03370 PF01613 Flavin reductase like domain E3H47_03375 PF01738 Dienelactone hydrolase family E3H47_03380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3H47_03380 PF14824 Sirohaem biosynthesis protein central E3H47_03380 PF10414 Sirohaem synthase dimerisation region E3H47_03385 PF00588 SpoU rRNA Methylase family E3H47_03390 PF13520 Amino acid permease E3H47_03395 PF00465 Iron-containing alcohol dehydrogenase E3H47_03405 PF03099 Biotin/lipoate A/B protein ligase family E3H47_03415 PF04545 Sigma-70, region 4 E3H47_03415 PF04539 Sigma-70 region 3 E3H47_03415 PF04542 Sigma-70 region 2 E3H47_03415 PF00140 Sigma-70 factor, region 1.2 E3H47_03415 PF03979 Sigma-70 factor, region 1.1 E3H47_03415 PF04546 Sigma-70, non-essential region E3H47_03430 PF09335 SNARE associated Golgi protein E3H47_03450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3H47_03455 PF02261 Aspartate decarboxylase E3H47_03460 PF01195 Peptidyl-tRNA hydrolase E3H47_03465 PF01386 Ribosomal L25p family E3H47_03470 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3H47_03470 PF14572 Phosphoribosyl synthetase-associated domain E3H47_03495 PF00288 GHMP kinases N terminal domain E3H47_03495 PF08544 GHMP kinases C terminal E3H47_03500 PF03550 Outer membrane lipoprotein LolB E3H47_03510 PF01488 Shikimate / quinate 5-dehydrogenase E3H47_03510 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3H47_03510 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3H47_03515 PF08278 DNA primase DnaG DnaB-binding E3H47_03515 PF01807 CHC2 zinc finger E3H47_03515 PF08275 DNA primase catalytic core, N-terminal domain E3H47_03515 PF10410 DnaB-helicase binding domain of primase E3H47_03520 PF13525 Outer membrane lipoprotein E3H47_03525 PF00849 RNA pseudouridylate synthase E3H47_03525 PF01479 S4 domain E3H47_03535 PF01668 SmpB protein E3H47_03540 PF01467 Cytidylyltransferase-like E3H47_03545 PF00037 4Fe-4S binding domain E3H47_03575 PF02540 NAD synthase E3H47_03575 PF00795 Carbon-nitrogen hydrolase E3H47_03585 PF00285 Citrate synthase, C-terminal domain E3H47_03590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3H47_03595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3H47_03600 PF02910 Fumarate reductase flavoprotein C-term E3H47_03600 PF00890 FAD binding domain E3H47_03605 PF13085 2Fe-2S iron-sulfur cluster binding domain E3H47_03610 PF00676 Dehydrogenase E1 component E3H47_03610 PF16870 2-oxoglutarate dehydrogenase C-terminal E3H47_03610 PF02779 Transketolase, pyrimidine binding domain E3H47_03610 PF16078 2-oxoglutarate dehydrogenase N-terminus E3H47_03615 PF00364 Biotin-requiring enzyme E3H47_03615 PF02817 e3 binding domain E3H47_03615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3H47_03620 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_03620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3H47_03625 PF08442 ATP-grasp domain E3H47_03625 PF00549 CoA-ligase E3H47_03630 PF02629 CoA binding domain E3H47_03630 PF00549 CoA-ligase E3H47_03635 PF00579 tRNA synthetases class I (W and Y) E3H47_03640 PF05661 Protein of unknown function (DUF808) E3H47_03645 PF04228 Putative neutral zinc metallopeptidase E3H47_03655 PF00999 Sodium/hydrogen exchanger family E3H47_03665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3H47_03670 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_03675 PF03449 Transcription elongation factor, N-terminal E3H47_03675 PF01272 Transcription elongation factor, GreA/GreB, C-term E3H47_03680 PF02142 MGS-like domain E3H47_03680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3H47_03680 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3H47_03685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3H47_03685 PF00117 Glutamine amidotransferase class-I E3H47_03700 PF01985 CRS1 / YhbY (CRM) domain E3H47_03705 PF01728 FtsJ-like methyltransferase E3H47_03710 PF01434 Peptidase family M41 E3H47_03710 PF17862 AAA+ lid domain E3H47_03710 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_03710 PF06480 FtsH Extracellular E3H47_03715 PF00809 Pterin binding enzyme E3H47_03735 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3H47_03735 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3H47_03750 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain E3H47_03750 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain E3H47_03755 PF00781 Diacylglycerol kinase catalytic domain E3H47_03765 PF00166 Chaperonin 10 Kd subunit E3H47_03770 PF00118 TCP-1/cpn60 chaperonin family E3H47_03785 PF00873 AcrB/AcrD/AcrF family E3H47_03790 PF01769 Divalent cation transporter E3H47_03790 PF03448 MgtE intracellular N domain E3H47_03790 PF00571 CBS domain E3H47_03800 PF01435 Peptidase family M48 E3H47_03805 PF01464 Transglycosylase SLT domain E3H47_03805 PF10145 Phage-related minor tail protein E3H47_03805 PF01551 Peptidase family M23 E3H47_03810 PF01171 PP-loop family E3H47_03820 PF01464 Transglycosylase SLT domain E3H47_03820 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3H47_03825 PF03449 Transcription elongation factor, N-terminal E3H47_03825 PF01272 Transcription elongation factor, GreA/GreB, C-term E3H47_03840 PF02350 UDP-N-acetylglucosamine 2-epimerase E3H47_03880 PF00289 Biotin carboxylase, N-terminal domain E3H47_03880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3H47_03880 PF02785 Biotin carboxylase C-terminal domain E3H47_03895 PF08753 NikR C terminal nickel binding domain E3H47_03895 PF01402 Ribbon-helix-helix protein, copG family E3H47_03900 PF01425 Amidase E3H47_03905 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3H47_03910 PF00893 Small Multidrug Resistance protein E3H47_03925 PF00005 ABC transporter E3H47_03930 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_03935 PF07690 Major Facilitator Superfamily E3H47_03940 PF12833 Helix-turn-helix domain E3H47_03940 PF14525 AraC-binding-like domain E3H47_03950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3H47_03950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3H47_03955 PF01047 MarR family E3H47_03960 PF01425 Amidase E3H47_03965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E3H47_03980 PF00355 Rieske [2Fe-2S] domain E3H47_03980 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E3H47_03995 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_03995 PF00175 Oxidoreductase NAD-binding domain E3H47_04000 PF01613 Flavin reductase like domain E3H47_04005 PF00171 Aldehyde dehydrogenase family E3H47_04035 PF10431 C-terminal, D2-small domain, of ClpB protein E3H47_04035 PF17871 AAA lid domain E3H47_04035 PF07724 AAA domain (Cdc48 subfamily) E3H47_04035 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_04115 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3H47_04120 PF05675 Protein of unknown function (DUF817) E3H47_04135 PF00990 Diguanylate cyclase, GGDEF domain E3H47_04150 PF00218 Indole-3-glycerol phosphate synthase E3H47_04155 PF02885 Glycosyl transferase family, helical bundle domain E3H47_04155 PF00591 Glycosyl transferase family, a/b domain E3H47_04160 PF00117 Glutamine amidotransferase class-I E3H47_04175 PF04345 Chorismate lyase E3H47_04180 PF01040 UbiA prenyltransferase family E3H47_04215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3H47_04215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3H47_04220 PF01784 NIF3 (NGG1p interacting factor 3) E3H47_04225 PF13180 PDZ domain E3H47_04230 PF12627 Probable RNA and SrmB- binding site of polymerase A E3H47_04230 PF01743 Poly A polymerase head domain E3H47_04235 PF01515 Phosphate acetyl/butaryl transferase E3H47_04235 PF00390 Malic enzyme, N-terminal domain E3H47_04235 PF03949 Malic enzyme, NAD binding domain E3H47_04240 PF04452 RNA methyltransferase E3H47_04245 PF02219 Methylenetetrahydrofolate reductase E3H47_04250 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E3H47_04250 PF05221 S-adenosyl-L-homocysteine hydrolase E3H47_04255 PF03441 FAD binding domain of DNA photolyase E3H47_04255 PF00875 DNA photolyase E3H47_04260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_04265 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_04270 PF00768 D-alanyl-D-alanine carboxypeptidase E3H47_04270 PF07943 Penicillin-binding protein 5, C-terminal domain E3H47_04280 PF03971 Monomeric isocitrate dehydrogenase E3H47_04290 PF00849 RNA pseudouridylate synthase E3H47_04295 PF00180 Isocitrate/isopropylmalate dehydrogenase E3H47_04305 PF02567 Phenazine biosynthesis-like protein E3H47_04315 PF05193 Peptidase M16 inactive domain E3H47_04315 PF00675 Insulinase (Peptidase family M16) E3H47_04335 PF01928 CYTH domain E3H47_04345 PF02581 Thiamine monophosphate synthase E3H47_04350 PF00202 Aminotransferase class-III E3H47_04365 PF00849 RNA pseudouridylate synthase E3H47_04370 PF18337 RapA N-terminal Tudor like domain E3H47_04370 PF12137 RNA polymerase recycling family C-terminal E3H47_04370 PF00176 SNF2 family N-terminal domain E3H47_04370 PF00271 Helicase conserved C-terminal domain E3H47_04370 PF18339 RapA N-terminal Tudor like domain 1 E3H47_04380 PF00440 Bacterial regulatory proteins, tetR family E3H47_04385 PF00175 Oxidoreductase NAD-binding domain E3H47_04385 PF00970 Oxidoreductase FAD-binding domain E3H47_04385 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_04390 PF00487 Fatty acid desaturase E3H47_04400 PF00202 Aminotransferase class-III E3H47_04405 PF00282 Pyridoxal-dependent decarboxylase conserved domain E3H47_04410 PF01037 Lrp/AsnC ligand binding domain E3H47_04415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3H47_04415 PF00205 Thiamine pyrophosphate enzyme, central domain E3H47_04415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3H47_04420 PF00324 Amino acid permease E3H47_04430 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_04435 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_04440 PF00005 ABC transporter E3H47_04450 PF08496 Peptidase family S49 N-terminal E3H47_04450 PF01343 Peptidase family S49 E3H47_04465 PF00206 Lyase E3H47_04465 PF08328 Adenylosuccinate lyase C-terminal E3H47_04470 PF04356 Protein of unknown function (DUF489) E3H47_04480 PF00293 NUDIX domain E3H47_04485 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_04490 PF07943 Penicillin-binding protein 5, C-terminal domain E3H47_04490 PF00768 D-alanyl-D-alanine carboxypeptidase E3H47_04505 PF01975 Survival protein SurE E3H47_04510 PF01551 Peptidase family M23 E3H47_04510 PF01476 LysM domain E3H47_04515 PF03466 LysR substrate binding domain E3H47_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_04520 PF00202 Aminotransferase class-III E3H47_04525 PF00462 Glutaredoxin E3H47_04530 PF05362 Lon protease (S16) C-terminal proteolytic domain E3H47_04530 PF13654 AAA domain E3H47_04535 PF07690 Major Facilitator Superfamily E3H47_04540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3H47_04545 PF13593 SBF-like CPA transporter family (DUF4137) E3H47_04550 PF01197 Ribosomal protein L31 E3H47_04565 PF04055 Radical SAM superfamily E3H47_04570 PF09285 Elongation factor P, C-terminal E3H47_04570 PF08207 Elongation factor P (EF-P) KOW-like domain E3H47_04570 PF01132 Elongation factor P (EF-P) OB domain E3H47_04575 PF02554 Carbon starvation protein CstA E3H47_04575 PF13722 5TM C-terminal transporter carbon starvation CstA E3H47_04580 PF04328 Selenoprotein, putative E3H47_04585 PF07726 ATPase family associated with various cellular activities (AAA) E3H47_04585 PF17863 AAA lid domain E3H47_04595 PF11992 Domain of unknown function (DUF3488) E3H47_04595 PF01841 Transglutaminase-like superfamily E3H47_04595 PF13559 Domain of unknown function (DUF4129) E3H47_04605 PF00589 Phage integrase family E3H47_04700 PF01695 IstB-like ATP binding protein E3H47_04885 PF00182 Chitinase class I E3H47_04955 PF00182 Chitinase class I E3H47_05000 PF00916 Sulfate permease family E3H47_05000 PF01740 STAS domain E3H47_05010 PF00860 Permease family E3H47_05015 PF00962 Adenosine/AMP deaminase E3H47_05035 PF01351 Ribonuclease HII E3H47_05040 PF02599 Global regulator protein family E3H47_05045 PF00696 Amino acid kinase family E3H47_05045 PF13840 ACT domain E3H47_05045 PF01842 ACT domain E3H47_05050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3H47_05050 PF01411 tRNA synthetases class II (A) E3H47_05050 PF02272 DHHA1 domain E3H47_05055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3H47_05055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3H47_05065 PF13393 Histidyl-tRNA synthetase E3H47_05070 PF00709 Adenylosuccinate synthetase E3H47_05085 PF00248 Aldo/keto reductase family E3H47_05090 PF13545 Crp-like helix-turn-helix domain E3H47_05090 PF00027 Cyclic nucleotide-binding domain E3H47_05095 PF02566 OsmC-like protein E3H47_05100 PF17871 AAA lid domain E3H47_05100 PF02861 Clp amino terminal domain, pathogenicity island component E3H47_05100 PF10431 C-terminal, D2-small domain, of ClpB protein E3H47_05100 PF07724 AAA domain (Cdc48 subfamily) E3H47_05100 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_05105 PF10672 S-adenosylmethionine-dependent methyltransferase E3H47_05105 PF02926 THUMP domain E3H47_05105 PF01170 Putative RNA methylase family UPF0020 E3H47_05115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3H47_05115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3H47_05120 PF01979 Amidohydrolase family E3H47_05125 PF01389 OmpA-like transmembrane domain E3H47_05125 PF00691 OmpA family E3H47_05140 PF08241 Methyltransferase domain E3H47_05140 PF12697 Alpha/beta hydrolase family E3H47_05145 PF02390 Putative methyltransferase E3H47_05150 PF00043 Glutathione S-transferase, C-terminal domain E3H47_05150 PF02798 Glutathione S-transferase, N-terminal domain E3H47_05155 PF05690 Thiazole biosynthesis protein ThiG E3H47_05170 PF00140 Sigma-70 factor, region 1.2 E3H47_05170 PF04545 Sigma-70, region 4 E3H47_05170 PF04542 Sigma-70 region 2 E3H47_05180 PF00313 'Cold-shock' DNA-binding domain E3H47_05185 PF00270 DEAD/DEAH box helicase E3H47_05185 PF00271 Helicase conserved C-terminal domain E3H47_05195 PF00881 Nitroreductase family E3H47_05200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3H47_05200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3H47_05220 PF01180 Dihydroorotate dehydrogenase E3H47_05225 PF02674 Colicin V production protein E3H47_05230 PF00156 Phosphoribosyl transferase domain E3H47_05245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3H47_05245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3H47_05250 PF01435 Peptidase family M48 E3H47_05255 PF09424 Yqey-like protein E3H47_05260 PF01165 Ribosomal protein S21 E3H47_05265 PF00814 Glycoprotease family E3H47_05270 PF00905 Penicillin binding protein transpeptidase domain E3H47_05285 PF03793 PASTA domain E3H47_05285 PF00069 Protein kinase domain E3H47_05315 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3H47_05315 PF00753 Metallo-beta-lactamase superfamily E3H47_05320 PF02843 Phosphoribosylglycinamide synthetase, C domain E3H47_05320 PF02844 Phosphoribosylglycinamide synthetase, N domain E3H47_05320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3H47_05325 PF02142 MGS-like domain E3H47_05325 PF01808 AICARFT/IMPCHase bienzyme E3H47_05330 PF02954 Bacterial regulatory protein, Fis family E3H47_05355 PF01134 Glucose inhibited division protein A E3H47_05355 PF13932 GidA associated domain E3H47_05365 PF14403 Circularly permuted ATP-grasp type 2 E3H47_05385 PF01168 Alanine racemase, N-terminal domain E3H47_05385 PF00842 Alanine racemase, C-terminal domain E3H47_05390 PF00772 DnaB-like helicase N terminal domain E3H47_05390 PF03796 DnaB-like helicase C terminal domain E3H47_05395 PF01281 Ribosomal protein L9, N-terminal domain E3H47_05395 PF03948 Ribosomal protein L9, C-terminal domain E3H47_05400 PF01084 Ribosomal protein S18 E3H47_05405 PF01250 Ribosomal protein S6 E3H47_05410 PF01040 UbiA prenyltransferase family E3H47_05415 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3H47_05420 PF00510 Cytochrome c oxidase subunit III E3H47_05425 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3H47_05430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3H47_05430 PF06481 COX Aromatic Rich Motif E3H47_05450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E3H47_05450 PF02896 PEP-utilising enzyme, TIM barrel domain E3H47_05450 PF00391 PEP-utilising enzyme, mobile domain E3H47_05455 PF03618 Kinase/pyrophosphorylase E3H47_05475 PF00296 Luciferase-like monooxygenase E3H47_05490 PF00472 RF-1 domain E3H47_05490 PF03462 PCRF domain E3H47_05495 PF13847 Methyltransferase domain E3H47_05495 PF17827 PrmC N-terminal domain E3H47_05500 PF12833 Helix-turn-helix domain E3H47_05500 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E3H47_05505 PF00106 short chain dehydrogenase E3H47_05510 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_05510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_05510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_05515 PF13193 AMP-binding enzyme C-terminal domain E3H47_05515 PF00501 AMP-binding enzyme E3H47_05525 PF00899 ThiF family E3H47_05530 PF03109 ABC1 family E3H47_05535 PF02152 Dihydroneopterin aldolase E3H47_05545 PF03232 Ubiquinone biosynthesis protein COQ7 E3H47_05550 PF07690 Major Facilitator Superfamily E3H47_05555 PF01103 Surface antigen E3H47_05555 PF07244 Surface antigen variable number repeat E3H47_05555 PF17243 POTRA domain TamA domain 1 E3H47_05560 PF04357 TamB, inner membrane protein subunit of TAM complex E3H47_05575 PF11791 Aconitate B N-terminal domain E3H47_05575 PF06434 Aconitate hydratase 2 N-terminus E3H47_05575 PF00330 Aconitase family (aconitate hydratase) E3H47_05600 PF01037 Lrp/AsnC ligand binding domain E3H47_05605 PF01032 FecCD transport family E3H47_05610 PF01032 FecCD transport family E3H47_05615 PF00005 ABC transporter E3H47_05620 PF01497 Periplasmic binding protein E3H47_05625 PF07690 Major Facilitator Superfamily E3H47_05630 PF03616 Sodium/glutamate symporter E3H47_05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_05635 PF03466 LysR substrate binding domain E3H47_05640 PF04284 Protein of unknown function (DUF441) E3H47_05645 PF01479 S4 domain E3H47_05645 PF00849 RNA pseudouridylate synthase E3H47_05655 PF00849 RNA pseudouridylate synthase E3H47_05660 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3H47_05665 PF01119 DNA mismatch repair protein, C-terminal domain E3H47_05665 PF08676 MutL C terminal dimerisation domain E3H47_05675 PF17209 Hfq protein E3H47_05680 PF09312 SurA N-terminal domain E3H47_05680 PF00639 PPIC-type PPIASE domain E3H47_05685 PF04453 LPS transport system D E3H47_05685 PF03968 OstA-like protein E3H47_05690 PF01636 Phosphotransferase enzyme family E3H47_05695 PF00483 Nucleotidyl transferase E3H47_05700 PF02527 rRNA small subunit methyltransferase G E3H47_05705 PF13614 AAA domain E3H47_05710 PF17762 HTH domain found in ParB protein E3H47_05710 PF02195 ParB-like nuclease domain E3H47_05715 PF01618 MotA/TolQ/ExbB proton channel family E3H47_05720 PF02472 Biopolymer transport protein ExbD/TolR E3H47_05725 PF00005 ABC transporter E3H47_05725 PF00664 ABC transporter transmembrane region E3H47_05730 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3H47_05735 PF02348 Cytidylyltransferase E3H47_05740 PF09115 DNA polymerase III, delta subunit, C terminal E3H47_05750 PF01026 TatD related DNase E3H47_05760 PF08334 Type II secretion system (T2SS), protein G E3H47_05760 PF07963 Prokaryotic N-terminal methylation motif E3H47_05765 PF07963 Prokaryotic N-terminal methylation motif E3H47_05765 PF02501 Type II secretion system (T2SS), protein I E3H47_05770 PF07963 Prokaryotic N-terminal methylation motif E3H47_05770 PF11612 Type II secretion system (T2SS), protein J E3H47_05775 PF03934 Type II secretion system (T2SS), protein K E3H47_05785 PF03167 Uracil DNA glycosylase superfamily E3H47_05795 PF14437 MafB19-like deaminase E3H47_05805 PF02224 Cytidylate kinase E3H47_05810 PF00575 S1 RNA binding domain E3H47_05815 PF00216 Bacterial DNA-binding protein E3H47_05835 PF08671 Anti-repressor SinI E3H47_05835 PF01381 Helix-turn-helix E3H47_05840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3H47_05845 PF03956 Lysine exporter LysO E3H47_05850 PF00743 Flavin-binding monooxygenase-like E3H47_05860 PF03969 AFG1-like ATPase E3H47_05865 PF01274 Malate synthase E3H47_05870 PF01266 FAD dependent oxidoreductase E3H47_05875 PF03466 LysR substrate binding domain E3H47_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_05885 PF04055 Radical SAM superfamily E3H47_05890 PF00676 Dehydrogenase E1 component E3H47_05895 PF02780 Transketolase, C-terminal domain E3H47_05895 PF02779 Transketolase, pyrimidine binding domain E3H47_05900 PF00364 Biotin-requiring enzyme E3H47_05900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3H47_05900 PF02817 e3 binding domain E3H47_05905 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_05905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3H47_05910 PF00107 Zinc-binding dehydrogenase E3H47_05910 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_05915 PF00106 short chain dehydrogenase E3H47_05945 PF05525 Branched-chain amino acid transport protein E3H47_05950 PF00557 Metallopeptidase family M24 E3H47_05955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_05955 PF03466 LysR substrate binding domain E3H47_05965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_05965 PF03466 LysR substrate binding domain E3H47_05970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_05970 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_05970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_05980 PF02515 CoA-transferase family III E3H47_05985 PF07290 Protein of unknown function (DUF1449) E3H47_05995 PF00294 pfkB family carbohydrate kinase E3H47_06000 PF00675 Insulinase (Peptidase family M16) E3H47_06000 PF05193 Peptidase M16 inactive domain E3H47_06000 PF08367 Peptidase M16C associated E3H47_06005 PF02253 Phospholipase A1 E3H47_06010 PF02386 Cation transport protein E3H47_06015 PF02254 TrkA-N domain E3H47_06015 PF02080 TrkA-C domain E3H47_06020 PF00585 C-terminal regulatory domain of Threonine dehydratase E3H47_06020 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_06025 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3H47_06035 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3H47_06035 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3H47_06045 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3H47_06050 PF02861 Clp amino terminal domain, pathogenicity island component E3H47_06050 PF10431 C-terminal, D2-small domain, of ClpB protein E3H47_06050 PF17871 AAA lid domain E3H47_06050 PF07724 AAA domain (Cdc48 subfamily) E3H47_06050 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_06055 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3H47_06065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3H47_06065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3H47_06070 PF00440 Bacterial regulatory proteins, tetR family E3H47_06080 PF00285 Citrate synthase, C-terminal domain E3H47_06090 PF00158 Sigma-54 interaction domain E3H47_06090 PF00072 Response regulator receiver domain E3H47_06090 PF02954 Bacterial regulatory protein, Fis family E3H47_06095 PF00512 His Kinase A (phospho-acceptor) domain E3H47_06095 PF00989 PAS fold E3H47_06095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_06100 PF18693 TRAM domain E3H47_06100 PF00919 Uncharacterized protein family UPF0004 E3H47_06100 PF04055 Radical SAM superfamily E3H47_06105 PF00696 Amino acid kinase family E3H47_06110 PF01765 Ribosome recycling factor E3H47_06115 PF01255 Putative undecaprenyl diphosphate synthase E3H47_06125 PF13288 DXP reductoisomerase C-terminal domain E3H47_06125 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3H47_06125 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3H47_06130 PF17820 PDZ domain E3H47_06130 PF02163 Peptidase family M50 E3H47_06130 PF13180 PDZ domain E3H47_06135 PF01103 Surface antigen E3H47_06135 PF07244 Surface antigen variable number repeat E3H47_06145 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3H47_06145 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_06150 PF07977 FabA-like domain E3H47_06155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3H47_06155 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_06170 PF02631 RecX family E3H47_06175 PF00154 recA bacterial DNA recombination protein E3H47_06180 PF01479 S4 domain E3H47_06185 PF13419 Haloacid dehalogenase-like hydrolase E3H47_06190 PF00459 Inositol monophosphatase family E3H47_06200 PF01649 Ribosomal protein S20 E3H47_06205 PF13460 NAD(P)H-binding E3H47_06210 PF03737 Aldolase/RraA E3H47_06225 PF03461 TRCF domain E3H47_06225 PF02559 CarD-like/TRCF domain E3H47_06225 PF00270 DEAD/DEAH box helicase E3H47_06225 PF00271 Helicase conserved C-terminal domain E3H47_06225 PF17757 UvrB interaction domain E3H47_06235 PF00211 Adenylate and Guanylate cyclase catalytic domain E3H47_06240 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_06245 PF00012 Hsp70 protein E3H47_06250 PF00226 DnaJ domain E3H47_06250 PF07743 HSCB C-terminal oligomerisation domain E3H47_06255 PF01521 Iron-sulphur cluster biosynthesis E3H47_06260 PF01592 NifU-like N terminal domain E3H47_06265 PF00266 Aminotransferase class-V E3H47_06270 PF02082 Transcriptional regulator E3H47_06285 PF00216 Bacterial DNA-binding protein E3H47_06300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_06300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_06300 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_06305 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_06305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_06305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_06310 PF03109 ABC1 family E3H47_06325 PF05175 Methyltransferase small domain E3H47_06330 PF01264 Chorismate synthase E3H47_06335 PF02464 Competence-damaged protein E3H47_06335 PF18146 Damage-inducible protein CinA KH domain E3H47_06335 PF00994 Probable molybdopterin binding domain E3H47_06350 PF08460 Bacterial SH3 domain E3H47_06350 PF01551 Peptidase family M23 E3H47_06365 PF00313 'Cold-shock' DNA-binding domain E3H47_06370 PF04239 Protein of unknown function (DUF421) E3H47_06375 PF01569 PAP2 superfamily E3H47_06385 PF00756 Putative esterase E3H47_06430 PF00072 Response regulator receiver domain E3H47_06430 PF00990 Diguanylate cyclase, GGDEF domain E3H47_06450 PF01425 Amidase E3H47_06460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3H47_06460 PF00289 Biotin carboxylase, N-terminal domain E3H47_06460 PF02785 Biotin carboxylase C-terminal domain E3H47_06465 PF00364 Biotin-requiring enzyme E3H47_06470 PF01220 Dehydroquinase class II E3H47_06490 PF02635 DsrE/DsrF-like family E3H47_06495 PF16363 GDP-mannose 4,6 dehydratase E3H47_06500 PF00206 Lyase E3H47_06500 PF10415 Fumarase C C-terminus E3H47_06505 PF00893 Small Multidrug Resistance protein E3H47_06555 PF01654 Cytochrome bd terminal oxidase subunit I E3H47_06560 PF02322 Cytochrome bd terminal oxidase subunit II E3H47_06575 PF00155 Aminotransferase class I and II E3H47_06575 PF00392 Bacterial regulatory proteins, gntR family E3H47_06600 PF00106 short chain dehydrogenase E3H47_06610 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3H47_06610 PF01619 Proline dehydrogenase E3H47_06610 PF00171 Aldehyde dehydrogenase family E3H47_06610 PF14850 DNA-binding domain of Proline dehydrogenase E3H47_06615 PF01037 Lrp/AsnC ligand binding domain E3H47_06620 PF00474 Sodium:solute symporter family E3H47_06625 PF10415 Fumarase C C-terminus E3H47_06625 PF00206 Lyase E3H47_06635 PF13091 PLD-like domain E3H47_06640 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_06640 PF00107 Zinc-binding dehydrogenase E3H47_06645 PF00155 Aminotransferase class I and II E3H47_06650 PF00324 Amino acid permease E3H47_06660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3H47_06665 PF00793 DAHP synthetase I family E3H47_06670 PF07690 Major Facilitator Superfamily E3H47_06675 PF01597 Glycine cleavage H-protein E3H47_06680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E3H47_06680 PF12833 Helix-turn-helix domain E3H47_06690 PF00664 ABC transporter transmembrane region E3H47_06690 PF00005 ABC transporter E3H47_06695 PF00990 Diguanylate cyclase, GGDEF domain E3H47_06695 PF13185 GAF domain E3H47_06710 PF00990 Diguanylate cyclase, GGDEF domain E3H47_06710 PF17158 Membrane-associated sensor, integral membrane domain E3H47_06730 PF00924 Mechanosensitive ion channel E3H47_06735 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) E3H47_06745 PF00375 Sodium:dicarboxylate symporter family E3H47_06750 PF01740 STAS domain E3H47_06750 PF00916 Sulfate permease family E3H47_06760 PF00210 Ferritin-like domain E3H47_06785 PF00596 Class II Aldolase and Adducin N-terminal domain E3H47_06790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3H47_06795 PF00378 Enoyl-CoA hydratase/isomerase E3H47_06800 PF03060 Nitronate monooxygenase E3H47_06815 PF01062 Bestrophin, RFP-TM, chloride channel E3H47_06820 PF00155 Aminotransferase class I and II E3H47_06825 PF02080 TrkA-C domain E3H47_06825 PF06826 Predicted Permease Membrane Region E3H47_06850 PF00873 AcrB/AcrD/AcrF family E3H47_06860 PF03466 LysR substrate binding domain E3H47_06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_06875 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3H47_06875 PF01926 50S ribosome-binding GTPase E3H47_06900 PF04411 PD-(D/E)XK nuclease superfamily E3H47_06905 PF02463 RecF/RecN/SMC N terminal domain E3H47_06910 PF00580 UvrD/REP helicase N-terminal domain E3H47_06910 PF13361 UvrD-like helicase C-terminal domain E3H47_06920 PF01381 Helix-turn-helix E3H47_06945 PF00083 Sugar (and other) transporter E3H47_06945 PF07690 Major Facilitator Superfamily E3H47_06950 PF00378 Enoyl-CoA hydratase/isomerase E3H47_06955 PF00378 Enoyl-CoA hydratase/isomerase E3H47_06960 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_06960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_06960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_06965 PF13193 AMP-binding enzyme C-terminal domain E3H47_06965 PF00501 AMP-binding enzyme E3H47_06970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3H47_06970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3H47_06975 PF00171 Aldehyde dehydrogenase family E3H47_06980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_06980 PF03466 LysR substrate binding domain E3H47_06985 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_06990 PF08223 PaaX-like protein C-terminal domain E3H47_06990 PF07848 PaaX-like protein E3H47_06995 PF00501 AMP-binding enzyme E3H47_06995 PF14535 AMP-binding enzyme C-terminal domain E3H47_07000 PF00378 Enoyl-CoA hydratase/isomerase E3H47_07005 PF00175 Oxidoreductase NAD-binding domain E3H47_07005 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_07005 PF00970 Oxidoreductase FAD-binding domain E3H47_07010 PF01883 Iron-sulfur cluster assembly protein E3H47_07015 PF05138 Phenylacetic acid catabolic protein E3H47_07020 PF06243 Phenylacetic acid degradation B E3H47_07025 PF05138 Phenylacetic acid catabolic protein E3H47_07030 PF01575 MaoC like domain E3H47_07030 PF00171 Aldehyde dehydrogenase family E3H47_07035 PF00753 Metallo-beta-lactamase superfamily E3H47_07040 PF00005 ABC transporter E3H47_07040 PF03459 TOBE domain E3H47_07045 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_07055 PF00994 Probable molybdopterin binding domain E3H47_07055 PF03454 MoeA C-terminal region (domain IV) E3H47_07055 PF03453 MoeA N-terminal region (domain I and II) E3H47_07060 PF01967 MoaC family E3H47_07060 PF00994 Probable molybdopterin binding domain E3H47_07065 PF02391 MoaE protein E3H47_07075 PF04055 Radical SAM superfamily E3H47_07075 PF06463 Molybdenum Cofactor Synthesis C E3H47_07080 PF12804 MobA-like NTP transferase domain E3H47_07085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3H47_07085 PF00384 Molybdopterin oxidoreductase E3H47_07085 PF04324 BFD-like [2Fe-2S] binding domain E3H47_07085 PF01568 Molydopterin dinucleotide binding domain E3H47_07095 PF18267 Rubredoxin NAD+ reductase C-terminal domain E3H47_07095 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_07095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3H47_07095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3H47_07095 PF04324 BFD-like [2Fe-2S] binding domain E3H47_07100 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_07100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3H47_07100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3H47_07100 PF18267 Rubredoxin NAD+ reductase C-terminal domain E3H47_07100 PF04324 BFD-like [2Fe-2S] binding domain E3H47_07105 PF07690 Major Facilitator Superfamily E3H47_07125 PF04966 Carbohydrate-selective porin, OprB family E3H47_07130 PF01011 PQQ enzyme repeat E3H47_07135 PF02601 Exonuclease VII, large subunit E3H47_07135 PF13742 OB-fold nucleic acid binding domain E3H47_07160 PF07690 Major Facilitator Superfamily E3H47_07170 PF01144 Coenzyme A transferase E3H47_07175 PF01144 Coenzyme A transferase E3H47_07180 PF07690 Major Facilitator Superfamily E3H47_07185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_07185 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_07185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_07190 PF02803 Thiolase, C-terminal domain E3H47_07190 PF00108 Thiolase, N-terminal domain E3H47_07195 PF09339 IclR helix-turn-helix domain E3H47_07200 PF02515 CoA-transferase family III E3H47_07205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_07205 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_07205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_07210 PF07690 Major Facilitator Superfamily E3H47_07215 PF07690 Major Facilitator Superfamily E3H47_07220 PF09339 IclR helix-turn-helix domain E3H47_07225 PF02515 CoA-transferase family III E3H47_07230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_07230 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_07230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_07235 PF07690 Major Facilitator Superfamily E3H47_07265 PF03466 LysR substrate binding domain E3H47_07265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_07270 PF03788 LrgA family E3H47_07275 PF04172 LrgB-like family E3H47_07280 PF02654 Cobalamin-5-phosphate synthase E3H47_07285 PF00300 Histidine phosphatase superfamily (branch 1) E3H47_07290 PF02277 Phosphoribosyltransferase E3H47_07295 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase E3H47_07335 PF04073 Aminoacyl-tRNA editing domain E3H47_07375 PF01654 Cytochrome bd terminal oxidase subunit I E3H47_07380 PF02322 Cytochrome bd terminal oxidase subunit II E3H47_07385 PF08173 Membrane bound YbgT-like protein E3H47_07405 PF02881 SRP54-type protein, helical bundle domain E3H47_07405 PF00448 SRP54-type protein, GTPase domain E3H47_07410 PF00675 Insulinase (Peptidase family M16) E3H47_07410 PF05193 Peptidase M16 inactive domain E3H47_07440 PF00571 CBS domain E3H47_07440 PF00478 IMP dehydrogenase / GMP reductase domain E3H47_07445 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_07455 PF07724 AAA domain (Cdc48 subfamily) E3H47_07455 PF10431 C-terminal, D2-small domain, of ClpB protein E3H47_07455 PF17871 AAA lid domain E3H47_07455 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_07455 PF02861 Clp amino terminal domain, pathogenicity island component E3H47_07465 PF05166 YcgL domain E3H47_07470 PF00570 HRDC domain E3H47_07470 PF01612 3'-5' exonuclease E3H47_07475 PF13662 Toprim domain E3H47_07475 PF02132 RecR protein E3H47_07480 PF02575 YbaB/EbfC DNA-binding family E3H47_07485 PF01053 Cys/Met metabolism PLP-dependent enzyme E3H47_07495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3H47_07495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3H47_07500 PF01758 Sodium Bile acid symporter family E3H47_07505 PF01022 Bacterial regulatory protein, arsR family E3H47_07510 PF03960 ArsC family E3H47_07550 PF00313 'Cold-shock' DNA-binding domain E3H47_07555 PF03279 Bacterial lipid A biosynthesis acyltransferase E3H47_07570 PF01230 HIT domain E3H47_07595 PF02684 Lipid-A-disaccharide synthetase E3H47_07600 PF00593 TonB dependent receptor E3H47_07600 PF07715 TonB-dependent Receptor Plug Domain E3H47_07615 PF01925 Sulfite exporter TauE/SafE E3H47_07620 PF00793 DAHP synthetase I family E3H47_07630 PF02542 YgbB family E3H47_07645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3H47_07650 PF04977 Septum formation initiator E3H47_07655 PF00113 Enolase, C-terminal TIM barrel domain E3H47_07655 PF03952 Enolase, N-terminal domain E3H47_07660 PF00793 DAHP synthetase I family E3H47_07665 PF00117 Glutamine amidotransferase class-I E3H47_07665 PF06418 CTP synthase N-terminus E3H47_07690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3H47_07690 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_07705 PF03466 LysR substrate binding domain E3H47_07710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3H47_07710 PF13378 Enolase C-terminal domain-like E3H47_07715 PF02426 Muconolactone delta-isomerase E3H47_07720 PF00775 Dioxygenase E3H47_07720 PF04444 Catechol dioxygenase N terminus E3H47_07725 PF00355 Rieske [2Fe-2S] domain E3H47_07725 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E3H47_07730 PF00866 Ring hydroxylating beta subunit E3H47_07735 PF00970 Oxidoreductase FAD-binding domain E3H47_07735 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_07735 PF00175 Oxidoreductase NAD-binding domain E3H47_07740 PF00106 short chain dehydrogenase E3H47_07750 PF01144 Coenzyme A transferase E3H47_07755 PF01144 Coenzyme A transferase E3H47_07760 PF02803 Thiolase, C-terminal domain E3H47_07760 PF00108 Thiolase, N-terminal domain E3H47_07765 PF12146 Serine aminopeptidase, S33 E3H47_07780 PF00083 Sugar (and other) transporter E3H47_07785 PF12697 Alpha/beta hydrolase family E3H47_07795 PF02146 Sir2 family E3H47_07800 PF00672 HAMP domain E3H47_07800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_07800 PF00512 His Kinase A (phospho-acceptor) domain E3H47_07805 PF00072 Response regulator receiver domain E3H47_07805 PF00486 Transcriptional regulatory protein, C terminal E3H47_07815 PF00576 HIUase/Transthyretin family E3H47_07820 PF07715 TonB-dependent Receptor Plug Domain E3H47_07820 PF00593 TonB dependent receptor E3H47_07825 PF05958 tRNA (Uracil-5-)-methyltransferase E3H47_07835 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3H47_07835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3H47_07840 PF00860 Permease family E3H47_07845 PF01613 Flavin reductase like domain E3H47_07850 PF01042 Endoribonuclease L-PSP E3H47_07855 PF00857 Isochorismatase family E3H47_07860 PF00296 Luciferase-like monooxygenase E3H47_07865 PF00881 Nitroreductase family E3H47_07870 PF12697 Alpha/beta hydrolase family E3H47_07885 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3H47_07885 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3H47_07890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3H47_07895 PF00149 Calcineurin-like phosphoesterase E3H47_07900 PF00881 Nitroreductase family E3H47_07910 PF01116 Fructose-bisphosphate aldolase class-II E3H47_07920 PF00162 Phosphoglycerate kinase E3H47_07930 PF02545 Maf-like protein E3H47_07935 PF08007 Cupin superfamily protein E3H47_07940 PF01645 Conserved region in glutamate synthase E3H47_07945 PF03848 Tellurite resistance protein TehB E3H47_07945 PF09313 Domain of unknown function (DUF1971) E3H47_07960 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3H47_07960 PF01565 FAD binding domain E3H47_07965 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3H47_07970 PF00465 Iron-containing alcohol dehydrogenase E3H47_07975 PF03061 Thioesterase superfamily E3H47_07980 PF12169 DNA polymerase III subunits gamma and tau domain III E3H47_07980 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3H47_07980 PF12170 DNA polymerase III tau subunit V interacting with alpha E3H47_07985 PF05175 Methyltransferase small domain E3H47_07990 PF00144 Beta-lactamase E3H47_08005 PF02803 Thiolase, C-terminal domain E3H47_08005 PF00108 Thiolase, N-terminal domain E3H47_08015 PF03466 LysR substrate binding domain E3H47_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_08020 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3H47_08025 PF01810 LysE type translocator E3H47_08030 PF03594 Benzoate membrane transport protein E3H47_08035 PF00893 Small Multidrug Resistance protein E3H47_08050 PF00582 Universal stress protein family E3H47_08055 PF11940 Domain of unknown function (DUF3458) Ig-like fold E3H47_08055 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E3H47_08055 PF01433 Peptidase family M1 domain E3H47_08065 PF02110 Hydroxyethylthiazole kinase family E3H47_08075 PF14493 Helix-turn-helix domain E3H47_08075 PF05970 PIF1-like helicase E3H47_08080 PF00465 Iron-containing alcohol dehydrogenase E3H47_08095 PF00171 Aldehyde dehydrogenase family E3H47_08100 PF13520 Amino acid permease E3H47_08105 PF06751 Ethanolamine ammonia lyase large subunit (EutB) E3H47_08110 PF05985 Ethanolamine ammonia-lyase light chain (EutC) E3H47_08115 PF02540 NAD synthase E3H47_08115 PF00117 Glutamine amidotransferase class-I E3H47_08115 PF00958 GMP synthase C terminal domain E3H47_08120 PF04264 YceI-like domain E3H47_08130 PF02780 Transketolase, C-terminal domain E3H47_08130 PF02779 Transketolase, pyrimidine binding domain E3H47_08130 PF00456 Transketolase, thiamine diphosphate binding domain E3H47_08135 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3H47_08135 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3H47_08135 PF02772 S-adenosylmethionine synthetase, central domain E3H47_08155 PF02075 Crossover junction endodeoxyribonuclease RuvC E3H47_08165 PF03853 YjeF-related protein N-terminus E3H47_08165 PF01256 Carbohydrate kinase E3H47_08170 PF08331 Domain of unknown function (DUF1730) E3H47_08175 PF06968 Biotin and Thiamin Synthesis associated domain E3H47_08175 PF04055 Radical SAM superfamily E3H47_08200 PF01709 Transcriptional regulator E3H47_08220 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_08220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_08220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E3H47_08225 PF00296 Luciferase-like monooxygenase E3H47_08230 PF03180 NLPA lipoprotein E3H47_08235 PF03180 NLPA lipoprotein E3H47_08240 PF09383 NIL domain E3H47_08240 PF00005 ABC transporter E3H47_08245 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_08250 PF01926 50S ribosome-binding GTPase E3H47_08250 PF06071 Protein of unknown function (DUF933) E3H47_08265 PF03591 AzlC protein E3H47_08270 PF05437 Branched-chain amino acid transport protein (AzlD) E3H47_08275 PF02222 ATP-grasp domain E3H47_08280 PF01966 HD domain E3H47_08280 PF01909 Nucleotidyltransferase domain E3H47_08280 PF08335 GlnD PII-uridylyltransferase E3H47_08285 PF00155 Aminotransferase class I and II E3H47_08290 PF00255 Glutathione peroxidase E3H47_08295 PF01641 SelR domain E3H47_08300 PF00155 Aminotransferase class I and II E3H47_08305 PF03180 NLPA lipoprotein E3H47_08310 PF00005 ABC transporter E3H47_08310 PF09383 NIL domain E3H47_08315 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_08320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3H47_08320 PF14579 Helix-hairpin-helix motif E3H47_08320 PF02811 PHP domain E3H47_08320 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3H47_08320 PF01336 OB-fold nucleic acid binding domain E3H47_08325 PF00588 SpoU rRNA Methylase family E3H47_08330 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_08350 PF01327 Polypeptide deformylase E3H47_08365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3H47_08365 PF00205 Thiamine pyrophosphate enzyme, central domain E3H47_08365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3H47_08370 PF00171 Aldehyde dehydrogenase family E3H47_08375 PF01958 Domain of unknown function DUF108 E3H47_08375 PF03447 Homoserine dehydrogenase, NAD binding domain E3H47_08385 PF12697 Alpha/beta hydrolase family E3H47_08395 PF07690 Major Facilitator Superfamily E3H47_08400 PF14759 Reductase C-terminal E3H47_08400 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_08405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3H47_08415 PF00355 Rieske [2Fe-2S] domain E3H47_08425 PF00355 Rieske [2Fe-2S] domain E3H47_08430 PF01614 Bacterial transcriptional regulator E3H47_08430 PF09339 IclR helix-turn-helix domain E3H47_08435 PF00355 Rieske [2Fe-2S] domain E3H47_08435 PF00848 Ring hydroxylating alpha subunit (catalytic domain) E3H47_08440 PF00866 Ring hydroxylating beta subunit E3H47_08445 PF00970 Oxidoreductase FAD-binding domain E3H47_08445 PF00175 Oxidoreductase NAD-binding domain E3H47_08445 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_08450 PF04444 Catechol dioxygenase N terminus E3H47_08450 PF00775 Dioxygenase E3H47_08455 PF07690 Major Facilitator Superfamily E3H47_08460 PF06719 AraC-type transcriptional regulator N-terminus E3H47_08460 PF12833 Helix-turn-helix domain E3H47_08470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_08470 PF03466 LysR substrate binding domain E3H47_08485 PF00698 Acyl transferase domain E3H47_08490 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG E3H47_08500 PF01039 Carboxyl transferase domain E3H47_08505 PF06857 Malonate decarboxylase delta subunit (MdcD) E3H47_08510 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3H47_08515 PF16957 Malonate decarboxylase, alpha subunit, transporter E3H47_08525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_08525 PF03466 LysR substrate binding domain E3H47_08530 PF18019 HD domain E3H47_08550 PF09615 CRISPR-associated protein (Cas_Csy3) E3H47_08560 PF01867 CRISPR associated protein Cas1 E3H47_08595 PF00990 Diguanylate cyclase, GGDEF domain E3H47_08595 PF08448 PAS fold E3H47_08600 PF01810 LysE type translocator E3H47_08605 PF01613 Flavin reductase like domain E3H47_08610 PF01717 Cobalamin-independent synthase, Catalytic domain E3H47_08610 PF08267 Cobalamin-independent synthase, N-terminal domain E3H47_08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_08645 PF03466 LysR substrate binding domain E3H47_08655 PF07690 Major Facilitator Superfamily E3H47_08665 PF13193 AMP-binding enzyme C-terminal domain E3H47_08665 PF00501 AMP-binding enzyme E3H47_08670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_08670 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_08670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_08675 PF00378 Enoyl-CoA hydratase/isomerase E3H47_08685 PF01047 MarR family E3H47_08725 PF04183 IucA / IucC family E3H47_08725 PF06276 Ferric iron reductase FhuF-like transporter E3H47_08730 PF06276 Ferric iron reductase FhuF-like transporter E3H47_08730 PF04183 IucA / IucC family E3H47_08740 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E3H47_08745 PF06276 Ferric iron reductase FhuF-like transporter E3H47_08745 PF04183 IucA / IucC family E3H47_08750 PF09278 MerR, DNA binding E3H47_08750 PF00376 MerR family regulatory protein E3H47_08755 PF00403 Heavy-metal-associated domain E3H47_08765 PF01624 MutS domain I E3H47_08765 PF05192 MutS domain III E3H47_08765 PF05188 MutS domain II E3H47_08765 PF00488 MutS domain V E3H47_08765 PF05190 MutS family domain IV E3H47_08770 PF00037 4Fe-4S binding domain E3H47_08770 PF11953 Domain of unknown function (DUF3470) E3H47_08780 PF01596 O-methyltransferase E3H47_08795 PF09186 Domain of unknown function (DUF1949) E3H47_08795 PF01205 Uncharacterized protein family UPF0029 E3H47_08805 PF03412 Peptidase C39 family E3H47_08805 PF00005 ABC transporter E3H47_08805 PF00664 ABC transporter transmembrane region E3H47_08810 PF02321 Outer membrane efflux protein E3H47_08815 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3H47_08815 PF00005 ABC transporter E3H47_08820 PF03968 OstA-like protein E3H47_08835 PF01380 SIS domain E3H47_08835 PF00571 CBS domain E3H47_08840 PF09190 DALR domain E3H47_08840 PF01406 tRNA synthetases class I (C) catalytic domain E3H47_08850 PF04463 Protein of unknown function (DUF523) E3H47_08855 PF07969 Amidohydrolase family E3H47_08860 PF01979 Amidohydrolase family E3H47_08865 PF00753 Metallo-beta-lactamase superfamily E3H47_08870 PF01717 Cobalamin-independent synthase, Catalytic domain E3H47_08875 PF03707 Bacterial signalling protein N terminal repeat E3H47_08875 PF00990 Diguanylate cyclase, GGDEF domain E3H47_08875 PF00563 EAL domain E3H47_08890 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3H47_08895 PF01730 UreF E3H47_08900 PF02814 UreE urease accessory protein, N-terminal domain E3H47_08900 PF05194 UreE urease accessory protein, C-terminal domain E3H47_08915 PF00449 Urease alpha-subunit, N-terminal domain E3H47_08915 PF01979 Amidohydrolase family E3H47_08920 PF00699 Urease beta subunit E3H47_08925 PF00547 Urease, gamma subunit E3H47_08930 PF01774 UreD urease accessory protein E3H47_08935 PF00324 Amino acid permease E3H47_08945 PF01613 Flavin reductase like domain E3H47_08950 PF00171 Aldehyde dehydrogenase family E3H47_08955 PF00753 Metallo-beta-lactamase superfamily E3H47_08965 PF04143 Sulphur transport E3H47_08970 PF02683 Cytochrome C biogenesis protein transmembrane region E3H47_08970 PF11412 Disulphide bond corrector protein DsbC E3H47_08975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3H47_08975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3H47_08980 PF00171 Aldehyde dehydrogenase family E3H47_08985 PF00202 Aminotransferase class-III E3H47_08990 PF00171 Aldehyde dehydrogenase family E3H47_09000 PF00392 Bacterial regulatory proteins, gntR family E3H47_09000 PF07729 FCD domain E3H47_09010 PF00324 Amino acid permease E3H47_09015 PF01266 FAD dependent oxidoreductase E3H47_09025 PF00155 Aminotransferase class I and II E3H47_09025 PF00392 Bacterial regulatory proteins, gntR family E3H47_09030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3H47_09030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3H47_09035 PF00271 Helicase conserved C-terminal domain E3H47_09035 PF04408 Helicase associated domain (HA2) E3H47_09035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E3H47_09035 PF11898 Domain of unknown function (DUF3418) E3H47_09035 PF00270 DEAD/DEAH box helicase E3H47_09040 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3H47_09040 PF00578 AhpC/TSA family E3H47_09060 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_09060 PF13192 Thioredoxin domain E3H47_09080 PF03883 Peroxide stress protein YaaA E3H47_09095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3H47_09100 PF01817 Chorismate mutase type II E3H47_09100 PF01842 ACT domain E3H47_09100 PF00800 Prephenate dehydratase E3H47_09105 PF00501 AMP-binding enzyme E3H47_09105 PF13193 AMP-binding enzyme C-terminal domain E3H47_09110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_09110 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_09110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_09115 PF00375 Sodium:dicarboxylate symporter family E3H47_09120 PF00591 Glycosyl transferase family, a/b domain E3H47_09120 PF02885 Glycosyl transferase family, helical bundle domain E3H47_09130 PF07023 Protein of unknown function (DUF1315) E3H47_09135 PF01513 ATP-NAD kinase E3H47_09140 PF00905 Penicillin binding protein transpeptidase domain E3H47_09140 PF00912 Transglycosylase E3H47_09140 PF14814 Bifunctional transglycosylase second domain E3H47_09150 PF00293 NUDIX domain E3H47_09160 PF00512 His Kinase A (phospho-acceptor) domain E3H47_09160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_09160 PF08521 Two-component sensor kinase N-terminal E3H47_09165 PF00072 Response regulator receiver domain E3H47_09165 PF00486 Transcriptional regulatory protein, C terminal E3H47_09170 PF04076 Bacterial OB fold (BOF) protein E3H47_09175 PF00437 Type II/IV secretion system protein E3H47_09180 PF13185 GAF domain E3H47_09180 PF00990 Diguanylate cyclase, GGDEF domain E3H47_09185 PF01980 tRNA-methyltransferase O E3H47_09185 PF18389 TrmO C-terminal domain E3H47_09190 PF00175 Oxidoreductase NAD-binding domain E3H47_09190 PF00970 Oxidoreductase FAD-binding domain E3H47_09200 PF00037 4Fe-4S binding domain E3H47_09205 PF13192 Thioredoxin domain E3H47_09205 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_09215 PF05816 Toxic anion resistance protein (TelA) E3H47_09225 PF01272 Transcription elongation factor, GreA/GreB, C-term E3H47_09225 PF14760 Rnk N-terminus E3H47_09240 PF00464 Serine hydroxymethyltransferase E3H47_09265 PF00005 ABC transporter E3H47_09270 PF01061 ABC-2 type transporter E3H47_09275 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E3H47_09275 PF14489 QueF-like protein E3H47_09285 PF01098 Cell cycle protein E3H47_09290 PF13406 Transglycosylase SLT domain E3H47_09295 PF03330 Lytic transglycolase E3H47_09295 PF05036 Sporulation related domain E3H47_09305 PF00889 Elongation factor TS E3H47_09310 PF00318 Ribosomal protein S2 E3H47_09315 PF00557 Metallopeptidase family M24 E3H47_09330 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_09330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3H47_09335 PF04055 Radical SAM superfamily E3H47_09340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_09340 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_09340 PF09317 Domain of unknown function (DUF1974) E3H47_09340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_09350 PF04143 Sulphur transport E3H47_09370 PF03060 Nitronate monooxygenase E3H47_09375 PF01207 Dihydrouridine synthase (Dus) E3H47_09385 PF17158 Membrane-associated sensor, integral membrane domain E3H47_09385 PF00990 Diguanylate cyclase, GGDEF domain E3H47_09390 PF03741 Integral membrane protein TerC family E3H47_09390 PF03471 Transporter associated domain E3H47_09400 PF03069 Acetamidase/Formamidase family E3H47_09405 PF07759 Protein of unknown function (DUF1615) E3H47_09415 PF00696 Amino acid kinase family E3H47_09415 PF01472 PUA domain E3H47_09420 PF01018 GTP1/OBG E3H47_09420 PF01926 50S ribosome-binding GTPase E3H47_09435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3H47_09435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3H47_09440 PF00892 EamA-like transporter family E3H47_09445 PF08212 Lipocalin-like domain E3H47_09450 PF00271 Helicase conserved C-terminal domain E3H47_09450 PF17757 UvrB interaction domain E3H47_09450 PF12344 Ultra-violet resistance protein B E3H47_09450 PF02151 UvrB/uvrC motif E3H47_09450 PF04851 Type III restriction enzyme, res subunit E3H47_09460 PF17155 Gammaproteobacterial periplasmic sensor domain E3H47_09460 PF00990 Diguanylate cyclase, GGDEF domain E3H47_09470 PF01638 HxlR-like helix-turn-helix E3H47_09490 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E3H47_09495 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3H47_09500 PF02565 Recombination protein O C terminal E3H47_09500 PF11967 Recombination protein O N terminal E3H47_09510 PF01926 50S ribosome-binding GTPase E3H47_09510 PF07650 KH domain E3H47_09515 PF14622 Ribonuclease-III-like E3H47_09515 PF00035 Double-stranded RNA binding motif E3H47_09525 PF10502 Signal peptidase, peptidase S26 E3H47_09530 PF06421 GTP-binding protein LepA C-terminus E3H47_09530 PF03144 Elongation factor Tu domain 2 E3H47_09530 PF00679 Elongation factor G C-terminus E3H47_09530 PF00009 Elongation factor Tu GTP binding domain E3H47_09540 PF13180 PDZ domain E3H47_09545 PF00890 FAD binding domain E3H47_09545 PF02910 Fumarate reductase flavoprotein C-term E3H47_09550 PF02223 Thymidylate kinase E3H47_09555 PF02618 YceG-like family E3H47_09560 PF01063 Amino-transferase class IV E3H47_09575 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_09580 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_09585 PF12857 TOBE-like domain E3H47_09585 PF00005 ABC transporter E3H47_09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_09590 PF03466 LysR substrate binding domain E3H47_09600 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3H47_09600 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_09600 PF14602 Hexapeptide repeat of succinyl-transferase E3H47_09605 PF04055 Radical SAM superfamily E3H47_09610 PF06508 Queuosine biosynthesis protein QueC E3H47_09620 PF00578 AhpC/TSA family E3H47_09625 PF00293 NUDIX domain E3H47_09625 PF01467 Cytidylyltransferase-like E3H47_09630 PF00378 Enoyl-CoA hydratase/isomerase E3H47_09640 PF01784 NIF3 (NGG1p interacting factor 3) E3H47_09645 PF00106 short chain dehydrogenase E3H47_09650 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E3H47_09650 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3H47_09650 PF02769 AIR synthase related protein, C-terminal domain E3H47_09655 PF01966 HD domain E3H47_09660 PF07499 RuvA, C-terminal domain E3H47_09660 PF01330 RuvA N terminal domain E3H47_09665 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3H47_09665 PF17864 RuvB AAA lid domain E3H47_09665 PF05491 RuvB C-terminal winged helix domain E3H47_09670 PF00743 Flavin-binding monooxygenase-like E3H47_09675 PF00106 short chain dehydrogenase E3H47_09685 PF03061 Thioesterase superfamily E3H47_09690 PF01618 MotA/TolQ/ExbB proton channel family E3H47_09695 PF02472 Biopolymer transport protein ExbD/TolR E3H47_09705 PF04052 TolB amino-terminal domain E3H47_09705 PF07676 WD40-like Beta Propeller Repeat E3H47_09710 PF00691 OmpA family E3H47_09720 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E3H47_09725 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3H47_09725 PF00588 SpoU rRNA Methylase family E3H47_09760 PF00308 Bacterial dnaA protein E3H47_09760 PF11638 DnaA N-terminal domain E3H47_09760 PF08299 Bacterial dnaA protein helix-turn-helix E3H47_09765 PF01594 AI-2E family transporter E3H47_09770 PF02769 AIR synthase related protein, C-terminal domain E3H47_09770 PF00586 AIR synthase related protein, N-terminal domain E3H47_09775 PF00551 Formyl transferase E3H47_09785 PF06965 Na+/H+ antiporter 1 E3H47_09785 PF01343 Peptidase family S49 E3H47_09795 PF13567 Domain of unknown function (DUF4131) E3H47_09795 PF00753 Metallo-beta-lactamase superfamily E3H47_09795 PF03772 Competence protein E3H47_09800 PF00005 ABC transporter E3H47_09805 PF12704 MacB-like periplasmic core domain E3H47_09805 PF02687 FtsX-like permease family E3H47_09820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E3H47_09830 PF00266 Aminotransferase class-V E3H47_09840 PF13533 Biotin-lipoyl like E3H47_09855 PF03989 DNA gyrase C-terminal domain, beta-propeller E3H47_09855 PF00521 DNA gyrase/topoisomerase IV, subunit A E3H47_09860 PF01012 Electron transfer flavoprotein domain E3H47_09860 PF00766 Electron transfer flavoprotein FAD-binding domain E3H47_09865 PF01012 Electron transfer flavoprotein domain E3H47_09870 PF01810 LysE type translocator E3H47_09875 PF01037 Lrp/AsnC ligand binding domain E3H47_09885 PF02899 Phage integrase, N-terminal SAM-like domain E3H47_09885 PF00589 Phage integrase family E3H47_09890 PF01678 Diaminopimelate epimerase E3H47_09895 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3H47_09895 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3H47_09905 PF00324 Amino acid permease E3H47_09910 PF18073 Rubredoxin metal binding domain E3H47_09920 PF00152 tRNA synthetases class II (D, K and N) E3H47_09925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3H47_09925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3H47_09925 PF11890 Domain of unknown function (DUF3410) E3H47_09930 PF00120 Glutamine synthetase, catalytic domain E3H47_09935 PF00486 Transcriptional regulatory protein, C terminal E3H47_09935 PF00072 Response regulator receiver domain E3H47_09945 PF02669 K+-transporting ATPase, c chain E3H47_09955 PF03814 Potassium-transporting ATPase A subunit E3H47_09965 PF00324 Amino acid permease E3H47_09970 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E3H47_09975 PF04996 Succinylarginine dihydrolase E3H47_09980 PF00171 Aldehyde dehydrogenase family E3H47_09985 PF04958 Arginine N-succinyltransferase beta subunit E3H47_09990 PF00202 Aminotransferase class-III E3H47_09995 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3H47_09995 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3H47_10010 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_10010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3H47_10015 PF09330 D-lactate dehydrogenase, membrane binding E3H47_10015 PF01565 FAD binding domain E3H47_10020 PF01070 FMN-dependent dehydrogenase E3H47_10025 PF07729 FCD domain E3H47_10025 PF00392 Bacterial regulatory proteins, gntR family E3H47_10030 PF02652 L-lactate permease E3H47_10035 PF00764 Arginosuccinate synthase E3H47_10040 PF00990 Diguanylate cyclase, GGDEF domain E3H47_10040 PF00563 EAL domain E3H47_10040 PF01590 GAF domain E3H47_10040 PF00360 Phytochrome region E3H47_10045 PF01979 Amidohydrolase family E3H47_10050 PF00929 Exonuclease E3H47_10065 PF00324 Amino acid permease E3H47_10080 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_10080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3H47_10085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3H47_10085 PF00005 ABC transporter E3H47_10090 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_10090 PF12911 N-terminal TM domain of oligopeptide transport permease C E3H47_10095 PF00528 Binding-protein-dependent transport system inner membrane component E3H47_10100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3H47_10105 PF01464 Transglycosylase SLT domain E3H47_10105 PF01476 LysM domain E3H47_10105 PF01464 Transglycosylase SLT domain E3H47_10105 PF01476 LysM domain E3H47_10110 PF00929 Exonuclease E3H47_10120 PF00293 NUDIX domain E3H47_10120 PF09297 NADH pyrophosphatase zinc ribbon domain E3H47_10130 PF04972 BON domain E3H47_10135 PF02021 Uncharacterised protein family UPF0102 E3H47_10140 PF04348 LppC putative lipoprotein E3H47_10145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3H47_10155 PF01494 FAD binding domain E3H47_10160 PF01494 FAD binding domain E3H47_10165 PF00557 Metallopeptidase family M24 E3H47_10165 PF05195 Aminopeptidase P, N-terminal domain E3H47_10170 PF03695 Uncharacterised protein family (UPF0149) E3H47_10190 PF01037 Lrp/AsnC ligand binding domain E3H47_10200 PF01925 Sulfite exporter TauE/SafE E3H47_10210 PF00487 Fatty acid desaturase E3H47_10215 PF07883 Cupin domain E3H47_10215 PF12833 Helix-turn-helix domain E3H47_10230 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3H47_10235 PF05362 Lon protease (S16) C-terminal proteolytic domain E3H47_10235 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3H47_10235 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_10240 PF04389 Peptidase family M28 E3H47_10245 PF02590 Predicted SPOUT methyltransferase E3H47_10250 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3H47_10260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3H47_10260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3H47_10265 PF04060 Putative Fe-S cluster E3H47_10270 PF10576 Iron-sulfur binding domain of endonuclease III E3H47_10270 PF00633 Helix-hairpin-helix motif E3H47_10270 PF00730 HhH-GPD superfamily base excision DNA repair protein E3H47_10280 PF05191 Adenylate kinase, active site lid E3H47_10295 PF03717 Penicillin-binding Protein dimerisation domain E3H47_10295 PF00905 Penicillin binding protein transpeptidase domain E3H47_10335 PF00463 Isocitrate lyase family E3H47_10340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_10340 PF03466 LysR substrate binding domain E3H47_10345 PF01595 Cyclin M transmembrane N-terminal domain E3H47_10345 PF03471 Transporter associated domain E3H47_10345 PF00571 CBS domain E3H47_10355 PF14765 Polyketide synthase dehydratase E3H47_10355 PF00550 Phosphopantetheine attachment site E3H47_10355 PF08659 KR domain E3H47_10355 PF02801 Beta-ketoacyl synthase, C-terminal domain E3H47_10355 PF00109 Beta-ketoacyl synthase, N-terminal domain E3H47_10355 PF16197 Ketoacyl-synthetase C-terminal extension E3H47_10355 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_10355 PF00698 Acyl transferase domain E3H47_10360 PF03009 Glycerophosphoryl diester phosphodiesterase family E3H47_10365 PF00009 Elongation factor Tu GTP binding domain E3H47_10370 PF01507 Phosphoadenosine phosphosulfate reductase family E3H47_10375 PF14052 Capsule assembly protein Wzi E3H47_10380 PF01336 OB-fold nucleic acid binding domain E3H47_10380 PF00152 tRNA synthetases class II (D, K and N) E3H47_10390 PF00156 Phosphoribosyl transferase domain E3H47_10395 PF00301 Rubredoxin E3H47_10400 PF18113 Rubredoxin binding C-terminal domain E3H47_10400 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_10405 PF00561 alpha/beta hydrolase fold E3H47_10410 PF03466 LysR substrate binding domain E3H47_10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_10415 PF02503 Polyphosphate kinase middle domain E3H47_10415 PF13090 Polyphosphate kinase C-terminal domain 2 E3H47_10415 PF17941 Polyphosphate kinase C-terminal domain 1 E3H47_10415 PF13089 Polyphosphate kinase N-terminal domain E3H47_10420 PF00912 Transglycosylase E3H47_10425 PF01694 Rhomboid family E3H47_10435 PF00005 ABC transporter E3H47_10440 PF13472 GDSL-like Lipase/Acylhydrolase family E3H47_10445 PF00484 Carbonic anhydrase E3H47_10450 PF00561 alpha/beta hydrolase fold E3H47_10460 PF07715 TonB-dependent Receptor Plug Domain E3H47_10460 PF00593 TonB dependent receptor E3H47_10465 PF01106 NifU-like domain E3H47_10465 PF01521 Iron-sulphur cluster biosynthesis E3H47_10475 PF00884 Sulfatase E3H47_10480 PF03781 Sulfatase-modifying factor enzyme 1 E3H47_10490 PF01384 Phosphate transporter family E3H47_10495 PF02607 B12 binding domain E3H47_10495 PF02310 B12 binding domain E3H47_10495 PF02965 Vitamin B12 dependent methionine synthase, activation domain E3H47_10495 PF02574 Homocysteine S-methyltransferase E3H47_10495 PF00809 Pterin binding enzyme E3H47_10505 PF01494 FAD binding domain E3H47_10510 PF07690 Major Facilitator Superfamily E3H47_10510 PF00083 Sugar (and other) transporter E3H47_10515 PF00067 Cytochrome P450 E3H47_10525 PF00083 Sugar (and other) transporter E3H47_10525 PF08946 Osmosensory transporter coiled coil E3H47_10550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3H47_10555 PF02308 MgtC family E3H47_10560 PF07152 YaeQ protein E3H47_10565 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3H47_10565 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3H47_10575 PF03061 Thioesterase superfamily E3H47_10580 PF05199 GMC oxidoreductase E3H47_10580 PF00732 GMC oxidoreductase E3H47_10585 PF00171 Aldehyde dehydrogenase family E3H47_10590 PF00440 Bacterial regulatory proteins, tetR family E3H47_10590 PF13977 BetI-type transcriptional repressor, C-terminal E3H47_10595 PF02028 BCCT, betaine/carnitine/choline family transporter E3H47_10605 PF17954 Quercetinase C-terminal cupin domain E3H47_10605 PF02678 Pirin E3H47_10610 PF05275 Copper resistance protein B precursor (CopB) E3H47_10615 PF00394 Multicopper oxidase E3H47_10615 PF07731 Multicopper oxidase E3H47_10615 PF07732 Multicopper oxidase E3H47_10630 PF14497 Glutathione S-transferase, C-terminal domain E3H47_10630 PF02798 Glutathione S-transferase, N-terminal domain E3H47_10640 PF01144 Coenzyme A transferase E3H47_10645 PF01144 Coenzyme A transferase E3H47_10650 PF02667 Short chain fatty acid transporter E3H47_10655 PF02803 Thiolase, C-terminal domain E3H47_10655 PF00108 Thiolase, N-terminal domain E3H47_10665 PF00582 Universal stress protein family E3H47_10710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3H47_10710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3H47_10715 PF07690 Major Facilitator Superfamily E3H47_10720 PF00529 HlyD membrane-fusion protein of T1SS E3H47_10720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3H47_10730 PF03061 Thioesterase superfamily E3H47_10735 PF00490 Delta-aminolevulinic acid dehydratase E3H47_10740 PF01266 FAD dependent oxidoreductase E3H47_10745 PF01370 NAD dependent epimerase/dehydratase family E3H47_10745 PF08338 Domain of unknown function (DUF1731) E3H47_10755 PF12320 Type 5 capsule protein repressor C-terminal domain E3H47_10755 PF00149 Calcineurin-like phosphoesterase E3H47_10765 PF01168 Alanine racemase, N-terminal domain E3H47_10770 PF00437 Type II/IV secretion system protein E3H47_10775 PF00437 Type II/IV secretion system protein E3H47_10780 PF01475 Ferric uptake regulator family E3H47_10785 PF04355 SmpA / OmlA family E3H47_10790 PF03658 RnfH family Ubiquitin E3H47_10800 PF01814 Hemerythrin HHE cation binding domain E3H47_10805 PF13230 Glutamine amidotransferases class-II E3H47_10810 PF00696 Amino acid kinase family E3H47_10815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3H47_10815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3H47_10815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3H47_10815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3H47_10820 PF00692 dUTPase E3H47_10825 PF13361 UvrD-like helicase C-terminal domain E3H47_10825 PF00580 UvrD/REP helicase N-terminal domain E3H47_10830 PF00691 OmpA family E3H47_10830 PF13488 Glycine zipper E3H47_10835 PF01553 Acyltransferase E3H47_10845 PF03775 Septum formation inhibitor MinC, C-terminal domain E3H47_10850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3H47_10855 PF03776 Septum formation topological specificity factor MinE E3H47_10865 PF17854 FtsK alpha domain E3H47_10865 PF01580 FtsK/SpoIIIE family E3H47_10865 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3H47_10865 PF09397 Ftsk gamma domain E3H47_10870 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_10875 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3H47_10880 PF04376 Arginine-tRNA-protein transferase, N terminus E3H47_10880 PF04377 Arginine-tRNA-protein transferase, C terminus E3H47_10885 PF00583 Acetyltransferase (GNAT) family E3H47_10895 PF03144 Elongation factor Tu domain 2 E3H47_10895 PF03143 Elongation factor Tu C-terminal domain E3H47_10895 PF00009 Elongation factor Tu GTP binding domain E3H47_10900 PF03764 Elongation factor G, domain IV E3H47_10900 PF03144 Elongation factor Tu domain 2 E3H47_10900 PF00009 Elongation factor Tu GTP binding domain E3H47_10900 PF14492 Elongation Factor G, domain II E3H47_10900 PF00679 Elongation factor G C-terminus E3H47_10905 PF00177 Ribosomal protein S7p/S5e E3H47_10910 PF00164 Ribosomal protein S12/S23 E3H47_10920 PF00109 Beta-ketoacyl synthase, N-terminal domain E3H47_10920 PF02801 Beta-ketoacyl synthase, C-terminal domain E3H47_10935 PF03070 TENA/THI-4/PQQC family E3H47_10935 PF02581 Thiamine monophosphate synthase E3H47_10935 PF08543 Phosphomethylpyrimidine kinase E3H47_10940 PF04972 BON domain E3H47_10940 PF01476 LysM domain E3H47_10945 PF00550 Phosphopantetheine attachment site E3H47_10955 PF00698 Acyl transferase domain E3H47_10960 PF01783 Ribosomal L32p protein family E3H47_10965 PF02620 Large ribosomal RNA subunit accumulation protein YceD E3H47_10970 PF04315 Elongation factor P hydroxylase E3H47_10975 PF01300 Telomere recombination E3H47_10985 PF02616 Segregation and condensation protein ScpA E3H47_10990 PF04079 Segregation and condensation complex subunit ScpB E3H47_10995 PF01479 S4 domain E3H47_10995 PF00849 RNA pseudouridylate synthase E3H47_11010 PF00155 Aminotransferase class I and II E3H47_11015 PF06968 Biotin and Thiamin Synthesis associated domain E3H47_11015 PF04055 Radical SAM superfamily E3H47_11015 PF00202 Aminotransferase class-III E3H47_11020 PF12697 Alpha/beta hydrolase family E3H47_11020 PF08241 Methyltransferase domain E3H47_11025 PF00210 Ferritin-like domain E3H47_11030 PF02358 Trehalose-phosphatase E3H47_11035 PF00982 Glycosyltransferase family 20 E3H47_11040 PF07690 Major Facilitator Superfamily E3H47_11045 PF00533 BRCA1 C Terminus (BRCT) domain E3H47_11045 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3H47_11045 PF03120 NAD-dependent DNA ligase OB-fold domain E3H47_11045 PF12826 Helix-hairpin-helix motif E3H47_11045 PF01653 NAD-dependent DNA ligase adenylation domain E3H47_11055 PF06470 SMC proteins Flexible Hinge Domain E3H47_11055 PF02463 RecF/RecN/SMC N terminal domain E3H47_11065 PF01925 Sulfite exporter TauE/SafE E3H47_11075 PF03309 Type III pantothenate kinase E3H47_11080 PF06821 Serine hydrolase E3H47_11085 PF02881 SRP54-type protein, helical bundle domain E3H47_11085 PF00448 SRP54-type protein, GTPase domain E3H47_11085 PF02978 Signal peptide binding domain E3H47_11095 PF13649 Methyltransferase domain E3H47_11100 PF01207 Dihydrouridine synthase (Dus) E3H47_11130 PF00849 RNA pseudouridylate synthase E3H47_11160 PF00694 Aconitase C-terminal domain E3H47_11160 PF00330 Aconitase family (aconitate hydratase) E3H47_11165 PF01571 Aminomethyltransferase folate-binding domain E3H47_11175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3H47_11180 PF02245 Methylpurine-DNA glycosylase (MPG) E3H47_11185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3H47_11185 PF06827 Zinc finger found in FPG and IleRS E3H47_11185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3H47_11195 PF01741 Large-conductance mechanosensitive channel, MscL E3H47_11205 PF00860 Permease family E3H47_11210 PF05175 Methyltransferase small domain E3H47_11210 PF08468 Methyltransferase small domain N-terminal E3H47_11215 PF00324 Amino acid permease E3H47_11220 PF00691 OmpA family E3H47_11220 PF13505 Outer membrane protein beta-barrel domain E3H47_11225 PF07963 Prokaryotic N-terminal methylation motif E3H47_11225 PF00114 Pilin (bacterial filament) E3H47_11230 PF00108 Thiolase, N-terminal domain E3H47_11230 PF02803 Thiolase, C-terminal domain E3H47_11270 PF03734 L,D-transpeptidase catalytic domain E3H47_11270 PF17969 L,D-transpeptidase C-terminal domain E3H47_11275 PF04304 Protein of unknown function (DUF454) E3H47_11285 PF08085 Entericidin EcnA/B family E3H47_11290 PF01546 Peptidase family M20/M25/M40 E3H47_11290 PF07687 Peptidase dimerisation domain E3H47_11300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_11300 PF01584 CheW-like domain E3H47_11300 PF01627 Hpt domain E3H47_11300 PF07194 P2 response regulator binding domain E3H47_11300 PF02895 Signal transducing histidine kinase, homodimeric domain E3H47_11305 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3H47_11305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3H47_11310 PF01584 CheW-like domain E3H47_11315 PF00072 Response regulator receiver domain E3H47_11320 PF00072 Response regulator receiver domain E3H47_11335 PF00873 AcrB/AcrD/AcrF family E3H47_11340 PF03129 Anticodon binding domain E3H47_11340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3H47_11340 PF04073 Aminoacyl-tRNA editing domain E3H47_11365 PF00692 dUTPase E3H47_11375 PF10609 NUBPL iron-transfer P-loop NTPase E3H47_11380 PF09334 tRNA synthetases class I (M) E3H47_11380 PF01588 Putative tRNA binding domain E3H47_11405 PF13533 Biotin-lipoyl like E3H47_11410 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_11425 PF05552 Conserved TM helix E3H47_11440 PF00970 Oxidoreductase FAD-binding domain E3H47_11440 PF00175 Oxidoreductase NAD-binding domain E3H47_11445 PF03466 LysR substrate binding domain E3H47_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_11455 PF00361 Proton-conducting membrane transporter E3H47_11460 PF00361 Proton-conducting membrane transporter E3H47_11465 PF00361 Proton-conducting membrane transporter E3H47_11465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3H47_11470 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3H47_11475 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3H47_11480 PF12838 4Fe-4S dicluster domain E3H47_11485 PF00146 NADH dehydrogenase E3H47_11490 PF00384 Molybdopterin oxidoreductase E3H47_11490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3H47_11490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3H47_11495 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3H47_11495 PF10531 SLBB domain E3H47_11495 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3H47_11505 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3H47_11505 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3H47_11510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3H47_11515 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E3H47_11520 PF00990 Diguanylate cyclase, GGDEF domain E3H47_11520 PF17151 Periplasmic sensor domain E3H47_11530 PF00672 HAMP domain E3H47_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_11530 PF00512 His Kinase A (phospho-acceptor) domain E3H47_11535 PF00486 Transcriptional regulatory protein, C terminal E3H47_11535 PF00072 Response regulator receiver domain E3H47_11540 PF03477 ATP cone domain E3H47_11540 PF02867 Ribonucleotide reductase, barrel domain E3H47_11540 PF00317 Ribonucleotide reductase, all-alpha domain E3H47_11555 PF00268 Ribonucleotide reductase, small chain E3H47_11560 PF03466 LysR substrate binding domain E3H47_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_11565 PF00593 TonB dependent receptor E3H47_11565 PF07715 TonB-dependent Receptor Plug Domain E3H47_11570 PF08378 Nuclease-related domain E3H47_11580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3H47_11580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3H47_11585 PF00893 Small Multidrug Resistance protein E3H47_11590 PF00834 Ribulose-phosphate 3 epimerase family E3H47_11600 PF00756 Putative esterase E3H47_11610 PF04445 Putative SAM-dependent methyltransferase E3H47_11615 PF02673 Bacitracin resistance protein BacA E3H47_11620 PF00814 Glycoprotease family E3H47_11625 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_11630 PF00293 NUDIX domain E3H47_11670 PF04715 Anthranilate synthase component I, N terminal region E3H47_11670 PF00425 chorismate binding enzyme E3H47_11675 PF00155 Aminotransferase class I and II E3H47_11680 PF00815 Histidinol dehydrogenase E3H47_11685 PF01634 ATP phosphoribosyltransferase E3H47_11690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3H47_11695 PF01722 BolA-like protein E3H47_11700 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3H47_11705 PF04552 Sigma-54, DNA binding domain E3H47_11705 PF00309 Sigma-54 factor, Activator interacting domain (AID) E3H47_11705 PF04963 Sigma-54 factor, core binding domain E3H47_11755 PF02445 Quinolinate synthetase A protein E3H47_11760 PF01960 ArgJ family E3H47_11770 PF02810 SEC-C motif E3H47_11770 PF07517 SecA DEAD-like domain E3H47_11770 PF01043 SecA preprotein cross-linking domain E3H47_11770 PF07516 SecA Wing and Scaffold domain E3H47_11775 PF00578 AhpC/TSA family E3H47_11775 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3H47_11790 PF02875 Mur ligase family, glutamate ligase domain E3H47_11790 PF08245 Mur ligase middle domain E3H47_11795 PF01039 Carboxyl transferase domain E3H47_11800 PF00290 Tryptophan synthase alpha chain E3H47_11810 PF12833 Helix-turn-helix domain E3H47_11810 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E3H47_11830 PF00291 Pyridoxal-phosphate dependent enzyme E3H47_11835 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3H47_11840 PF07715 TonB-dependent Receptor Plug Domain E3H47_11840 PF00593 TonB dependent receptor E3H47_11845 PF01923 Cobalamin adenosyltransferase E3H47_11865 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3H47_11870 PF00486 Transcriptional regulatory protein, C terminal E3H47_11870 PF00072 Response regulator receiver domain E3H47_11875 PF00512 His Kinase A (phospho-acceptor) domain E3H47_11875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_11875 PF00672 HAMP domain E3H47_11885 PF12806 Acetyl-CoA dehydrogenase C-terminal like E3H47_11885 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_11885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_11885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_11890 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_11890 PF12806 Acetyl-CoA dehydrogenase C-terminal like E3H47_11890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_11890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_11895 PF00929 Exonuclease E3H47_11900 PF03193 RsgA GTPase E3H47_11910 PF00462 Glutaredoxin E3H47_11915 PF02556 Preprotein translocase subunit SecB E3H47_11920 PF04127 DNA / pantothenate metabolism flavoprotein E3H47_11920 PF02441 Flavoprotein E3H47_11925 PF04002 RadC-like JAB domain E3H47_11930 PF01062 Bestrophin, RFP-TM, chloride channel E3H47_11940 PF04279 Intracellular septation protein A E3H47_11945 PF03795 YCII-related domain E3H47_11955 PF01266 FAD dependent oxidoreductase E3H47_11955 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3H47_11965 PF04461 Protein of unknown function (DUF520) E3H47_11975 PF03061 Thioesterase superfamily E3H47_11980 PF00085 Thioredoxin E3H47_11985 PF04273 Putative phosphatase (DUF442) E3H47_11985 PF00753 Metallo-beta-lactamase superfamily E3H47_12000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3H47_12000 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_12040 PF01066 CDP-alcohol phosphatidyltransferase E3H47_12045 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E3H47_12065 PF00056 lactate/malate dehydrogenase, NAD binding domain E3H47_12065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3H47_12075 PF01464 Transglycosylase SLT domain E3H47_12075 PF10145 Phage-related minor tail protein E3H47_12075 PF01551 Peptidase family M23 E3H47_12080 PF01938 TRAM domain E3H47_12080 PF00919 Uncharacterized protein family UPF0004 E3H47_12080 PF04055 Radical SAM superfamily E3H47_12085 PF02562 PhoH-like protein E3H47_12090 PF02130 Uncharacterized protein family UPF0054 E3H47_12120 PF03358 NADPH-dependent FMN reductase E3H47_12125 PF03631 Virulence factor BrkB E3H47_12130 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3H47_12165 PF08206 Ribonuclease B OB domain E3H47_12165 PF17876 Cold shock domain E3H47_12165 PF08461 Ribonuclease R winged-helix domain E3H47_12165 PF00575 S1 RNA binding domain E3H47_12165 PF00773 RNB domain E3H47_12170 PF01432 Peptidase family M3 E3H47_12175 PF09526 Probable metal-binding protein (DUF2387) E3H47_12205 PF03937 Flavinator of succinate dehydrogenase E3H47_12210 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_12210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_12210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_12215 PF00743 Flavin-binding monooxygenase-like E3H47_12220 PF01196 Ribosomal protein L17 E3H47_12225 PF01000 RNA polymerase Rpb3/RpoA insert domain E3H47_12225 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3H47_12225 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3H47_12230 PF00163 Ribosomal protein S4/S9 N-terminal domain E3H47_12230 PF01479 S4 domain E3H47_12235 PF00411 Ribosomal protein S11 E3H47_12240 PF00416 Ribosomal protein S13/S18 E3H47_12245 PF00444 Ribosomal protein L36 E3H47_12250 PF00344 SecY translocase E3H47_12255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3H47_12260 PF00327 Ribosomal protein L30p/L7e E3H47_12265 PF03719 Ribosomal protein S5, C-terminal domain E3H47_12265 PF00333 Ribosomal protein S5, N-terminal domain E3H47_12270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3H47_12275 PF00347 Ribosomal protein L6 E3H47_12280 PF00410 Ribosomal protein S8 E3H47_12285 PF00253 Ribosomal protein S14p/S29e E3H47_12290 PF00673 ribosomal L5P family C-terminus E3H47_12290 PF00281 Ribosomal protein L5 E3H47_12295 PF00467 KOW motif E3H47_12295 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3H47_12300 PF00238 Ribosomal protein L14p/L23e E3H47_12305 PF00366 Ribosomal protein S17 E3H47_12310 PF00831 Ribosomal L29 protein E3H47_12315 PF00252 Ribosomal protein L16p/L10e E3H47_12320 PF07650 KH domain E3H47_12320 PF00189 Ribosomal protein S3, C-terminal domain E3H47_12325 PF00237 Ribosomal protein L22p/L17e E3H47_12330 PF00203 Ribosomal protein S19 E3H47_12335 PF03947 Ribosomal Proteins L2, C-terminal domain E3H47_12335 PF00181 Ribosomal Proteins L2, RNA binding domain E3H47_12340 PF00276 Ribosomal protein L23 E3H47_12345 PF00573 Ribosomal protein L4/L1 family E3H47_12350 PF00297 Ribosomal protein L3 E3H47_12355 PF00338 Ribosomal protein S10p/S20e E3H47_12360 PF00117 Glutamine amidotransferase class-I E3H47_12365 PF01053 Cys/Met metabolism PLP-dependent enzyme E3H47_12370 PF00042 Globin E3H47_12370 PF00175 Oxidoreductase NAD-binding domain E3H47_12370 PF00970 Oxidoreductase FAD-binding domain E3H47_12375 PF02082 Transcriptional regulator E3H47_12380 PF01926 50S ribosome-binding GTPase E3H47_12385 PF00375 Sodium:dicarboxylate symporter family E3H47_12395 PF01553 Acyltransferase E3H47_12405 PF00270 DEAD/DEAH box helicase E3H47_12405 PF00271 Helicase conserved C-terminal domain E3H47_12405 PF17191 RecG wedge domain E3H47_12410 PF00156 Phosphoribosyl transferase domain E3H47_12420 PF03641 Possible lysine decarboxylase E3H47_12425 PF01544 CorA-like Mg2+ transporter protein E3H47_12435 PF05494 MlaC protein E3H47_12440 PF02470 MlaD protein E3H47_12445 PF02405 Permease MlaE E3H47_12450 PF00005 ABC transporter E3H47_12455 PF00271 Helicase conserved C-terminal domain E3H47_12455 PF12343 Cold shock protein DEAD box A E3H47_12455 PF03880 DbpA RNA binding domain E3H47_12455 PF00270 DEAD/DEAH box helicase E3H47_12460 PF00459 Inositol monophosphatase family E3H47_12465 PF02780 Transketolase, C-terminal domain E3H47_12465 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3H47_12465 PF02779 Transketolase, pyrimidine binding domain E3H47_12470 PF00925 GTP cyclohydrolase II E3H47_12475 PF01218 Coproporphyrinogen III oxidase E3H47_12485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3H47_12485 PF08501 Shikimate dehydrogenase substrate binding domain E3H47_12485 PF01488 Shikimate / quinate 5-dehydrogenase E3H47_12495 PF12806 Acetyl-CoA dehydrogenase C-terminal like E3H47_12495 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_12495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_12495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_12505 PF04024 PspC domain E3H47_12520 PF02091 Glycyl-tRNA synthetase alpha subunit E3H47_12525 PF02092 Glycyl-tRNA synthetase beta subunit E3H47_12525 PF05746 DALR anticodon binding domain E3H47_12545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3H47_12545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3H47_12560 PF08241 Methyltransferase domain E3H47_12585 PF01594 AI-2E family transporter E3H47_12590 PF00080 Copper/zinc superoxide dismutase (SODC) E3H47_12595 PF07690 Major Facilitator Superfamily E3H47_12605 PF02913 FAD linked oxidases, C-terminal domain E3H47_12605 PF01565 FAD binding domain E3H47_12610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3H47_12610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3H47_12615 PF00892 EamA-like transporter family E3H47_12620 PF00892 EamA-like transporter family E3H47_12630 PF01925 Sulfite exporter TauE/SafE E3H47_12635 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3H47_12635 PF09157 Pseudouridine synthase II TruB, C-terminal E3H47_12635 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3H47_12640 PF03280 Proteobacterial lipase chaperone protein E3H47_12645 PF00561 alpha/beta hydrolase fold E3H47_12650 PF00561 alpha/beta hydrolase fold E3H47_12655 PF01245 Ribosomal protein L19 E3H47_12660 PF01746 tRNA (Guanine-1)-methyltransferase E3H47_12665 PF05239 PRC-barrel domain E3H47_12665 PF01782 RimM N-terminal domain E3H47_12670 PF00886 Ribosomal protein S16 E3H47_12705 PF00114 Pilin (bacterial filament) E3H47_12705 PF07963 Prokaryotic N-terminal methylation motif E3H47_12710 PF02401 LytB protein E3H47_12715 PF00625 Guanylate kinase E3H47_12720 PF01192 RNA polymerase Rpb6 E3H47_12725 PF13291 ACT domain E3H47_12725 PF04607 Region found in RelA / SpoT proteins E3H47_12725 PF02824 TGS domain E3H47_12730 PF01042 Endoribonuclease L-PSP E3H47_12735 PF04324 BFD-like [2Fe-2S] binding domain E3H47_12740 PF00210 Ferritin-like domain E3H47_12745 PF00114 Pilin (bacterial filament) E3H47_12745 PF07963 Prokaryotic N-terminal methylation motif E3H47_12750 PF02350 UDP-N-acetylglucosamine 2-epimerase E3H47_12760 PF00534 Glycosyl transferases group 1 E3H47_12775 PF00535 Glycosyl transferase family 2 E3H47_12785 PF07963 Prokaryotic N-terminal methylation motif E3H47_12785 PF00114 Pilin (bacterial filament) E3H47_12795 PF04536 TPM domain E3H47_12800 PF04011 LemA family E3H47_12810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3H47_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_12815 PF00310 Glutamine amidotransferases class-II E3H47_12815 PF01645 Conserved region in glutamate synthase E3H47_12815 PF01493 GXGXG motif E3H47_12815 PF04898 Glutamate synthase central domain E3H47_12825 PF01761 3-dehydroquinate synthase E3H47_12830 PF01202 Shikimate kinase E3H47_12835 PF11741 AMIN domain E3H47_12835 PF00263 Bacterial type II and III secretion system protein E3H47_12835 PF03958 Bacterial type II/III secretion system short domain E3H47_12835 PF07660 Secretin and TonB N terminus short domain E3H47_12860 PF00905 Penicillin binding protein transpeptidase domain E3H47_12860 PF00912 Transglycosylase E3H47_12860 PF17092 Penicillin-binding protein OB-like domain E3H47_12865 PF13847 Methyltransferase domain E3H47_12870 PF00953 Glycosyl transferase family 4 E3H47_12875 PF08245 Mur ligase middle domain E3H47_12875 PF02875 Mur ligase family, glutamate ligase domain E3H47_12875 PF01225 Mur ligase family, catalytic domain E3H47_12880 PF08245 Mur ligase middle domain E3H47_12880 PF02875 Mur ligase family, glutamate ligase domain E3H47_12880 PF01225 Mur ligase family, catalytic domain E3H47_12885 PF03717 Penicillin-binding Protein dimerisation domain E3H47_12885 PF00905 Penicillin binding protein transpeptidase domain E3H47_12895 PF01795 MraW methylase family E3H47_12910 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3H47_12930 PF01545 Cation efflux family E3H47_12935 PF12848 ABC transporter E3H47_12935 PF00005 ABC transporter E3H47_12940 PF01053 Cys/Met metabolism PLP-dependent enzyme E3H47_12945 PF00106 short chain dehydrogenase E3H47_12960 PF17674 HHH domain E3H47_12960 PF00575 S1 RNA binding domain E3H47_12960 PF09371 Tex-like protein N-terminal domain E3H47_12960 PF16921 Tex protein YqgF-like domain E3H47_12965 PF00072 Response regulator receiver domain E3H47_12965 PF00486 Transcriptional regulatory protein, C terminal E3H47_12970 PF00672 HAMP domain E3H47_12970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_12970 PF00512 His Kinase A (phospho-acceptor) domain E3H47_12975 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain E3H47_12975 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain E3H47_13000 PF00475 Imidazoleglycerol-phosphate dehydratase E3H47_13005 PF00117 Glutamine amidotransferase class-I E3H47_13020 PF00977 Histidine biosynthesis protein E3H47_13025 PF00892 EamA-like transporter family E3H47_13040 PF01636 Phosphotransferase enzyme family E3H47_13045 PF00977 Histidine biosynthesis protein E3H47_13055 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term E3H47_13055 PF12833 Helix-turn-helix domain E3H47_13075 PF02705 K+ potassium transporter E3H47_13085 PF17763 Glutaminase/Asparaginase C-terminal domain E3H47_13085 PF00710 Asparaginase, N-terminal E3H47_13100 PF01593 Flavin containing amine oxidoreductase E3H47_13115 PF00199 Catalase E3H47_13115 PF18011 C-terminal domain found in long catalases E3H47_13115 PF06628 Catalase-related immune-responsive E3H47_13175 PF00436 Single-strand binding protein family E3H47_13180 PF07690 Major Facilitator Superfamily E3H47_13195 PF08543 Phosphomethylpyrimidine kinase E3H47_13195 PF03070 TENA/THI-4/PQQC family E3H47_13195 PF02581 Thiamine monophosphate synthase E3H47_13200 PF17760 UvrA interaction domain E3H47_13200 PF17755 UvrA DNA-binding domain E3H47_13215 PF02028 BCCT, betaine/carnitine/choline family transporter E3H47_13230 PF00474 Sodium:solute symporter family E3H47_13235 PF04341 Protein of unknown function, DUF485 E3H47_13240 PF00072 Response regulator receiver domain E3H47_13240 PF01627 Hpt domain E3H47_13240 PF00512 His Kinase A (phospho-acceptor) domain E3H47_13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_13240 PF00672 HAMP domain E3H47_13250 PF00196 Bacterial regulatory proteins, luxR family E3H47_13250 PF00072 Response regulator receiver domain E3H47_13255 PF03358 NADPH-dependent FMN reductase E3H47_13265 PF08028 Acyl-CoA dehydrogenase, C-terminal domain E3H47_13265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_13270 PF00501 AMP-binding enzyme E3H47_13270 PF16177 Acetyl-coenzyme A synthetase N-terminus E3H47_13270 PF13193 AMP-binding enzyme C-terminal domain E3H47_13275 PF05656 Protein of unknown function (DUF805) E3H47_13280 PF05552 Conserved TM helix E3H47_13280 PF00924 Mechanosensitive ion channel E3H47_13290 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3H47_13295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3H47_13305 PF13673 Acetyltransferase (GNAT) domain E3H47_13310 PF09335 SNARE associated Golgi protein E3H47_13325 PF02272 DHHA1 domain E3H47_13325 PF17768 RecJ OB domain E3H47_13325 PF01368 DHH family E3H47_13330 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3H47_13330 PF01243 Pyridoxamine 5'-phosphate oxidase E3H47_13335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3H47_13335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3H47_13335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3H47_13335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3H47_13340 PF00478 IMP dehydrogenase / GMP reductase domain E3H47_13340 PF00571 CBS domain E3H47_13345 PF03692 Putative zinc- or iron-chelating domain E3H47_13350 PF00258 Flavodoxin E3H47_13350 PF01613 Flavin reductase like domain E3H47_13355 PF01169 Uncharacterized protein family UPF0016 E3H47_13360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3H47_13360 PF00364 Biotin-requiring enzyme E3H47_13360 PF02817 e3 binding domain E3H47_13365 PF00456 Transketolase, thiamine diphosphate binding domain E3H47_13365 PF17831 Pyruvate dehydrogenase E1 component middle domain E3H47_13380 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3H47_13385 PF00091 Tubulin/FtsZ family, GTPase domain E3H47_13385 PF12327 FtsZ family, C-terminal domain E3H47_13390 PF02491 SHS2 domain inserted in FTSA E3H47_13395 PF08478 POTRA domain, FtsQ-type E3H47_13395 PF03799 Cell division protein FtsQ E3H47_13400 PF07478 D-ala D-ala ligase C-terminus E3H47_13400 PF01820 D-ala D-ala ligase N-terminus E3H47_13405 PF01225 Mur ligase family, catalytic domain E3H47_13405 PF08245 Mur ligase middle domain E3H47_13405 PF02875 Mur ligase family, glutamate ligase domain E3H47_13410 PF03033 Glycosyltransferase family 28 N-terminal domain E3H47_13410 PF04101 Glycosyltransferase family 28 C-terminal domain E3H47_13415 PF07690 Major Facilitator Superfamily E3H47_13425 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3H47_13425 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3H47_13430 PF00156 Phosphoribosyl transferase domain E3H47_13435 PF03372 Endonuclease/Exonuclease/phosphatase family E3H47_13450 PF07859 alpha/beta hydrolase fold E3H47_13460 PF12796 Ankyrin repeats (3 copies) E3H47_13460 PF07722 Peptidase C26 E3H47_13475 PF01751 Toprim domain E3H47_13475 PF00986 DNA gyrase B subunit, carboxyl terminus E3H47_13475 PF00204 DNA gyrase B E3H47_13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_13480 PF05728 Uncharacterised protein family (UPF0227) E3H47_13490 PF02600 Disulfide bond formation protein DsbB E3H47_13495 PF04262 Glutamate-cysteine ligase E3H47_13515 PF00155 Aminotransferase class I and II E3H47_13520 PF01554 MatE E3H47_13525 PF00106 short chain dehydrogenase E3H47_13535 PF00072 Response regulator receiver domain E3H47_13535 PF00486 Transcriptional regulatory protein, C terminal E3H47_13540 PF00512 His Kinase A (phospho-acceptor) domain E3H47_13540 PF11808 Phosphate regulon sensor protein PhoR E3H47_13540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_13540 PF00989 PAS fold E3H47_13545 PF02666 Phosphatidylserine decarboxylase E3H47_13550 PF00581 Rhodanese-like domain E3H47_13555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3H47_13555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E3H47_13565 PF06628 Catalase-related immune-responsive E3H47_13565 PF00199 Catalase E3H47_13570 PF02580 D-Tyr-tRNA(Tyr) deacylase E3H47_13595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3H47_13595 PF00925 GTP cyclohydrolase II E3H47_13600 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3H47_13605 PF01029 NusB family E3H47_13610 PF02769 AIR synthase related protein, C-terminal domain E3H47_13610 PF00586 AIR synthase related protein, N-terminal domain E3H47_13615 PF04608 Phosphatidylglycerophosphatase A E3H47_13620 PF12804 MobA-like NTP transferase domain E3H47_13620 PF14602 Hexapeptide repeat of succinyl-transferase E3H47_13620 PF00132 Bacterial transferase hexapeptide (six repeats) E3H47_13625 PF01380 SIS domain E3H47_13630 PF00892 EamA-like transporter family E3H47_13635 PF00392 Bacterial regulatory proteins, gntR family E3H47_13635 PF00155 Aminotransferase class I and II E3H47_13640 PF01758 Sodium Bile acid symporter family E3H47_13645 PF00857 Isochorismatase family E3H47_13650 PF07690 Major Facilitator Superfamily E3H47_13655 PF00701 Dihydrodipicolinate synthetase family E3H47_13665 PF01259 SAICAR synthetase E3H47_13675 PF04070 Domain of unknown function (DUF378) E3H47_13680 PF12002 MgsA AAA+ ATPase C terminal E3H47_13680 PF00004 ATPase family associated with various cellular activities (AAA) E3H47_13680 PF16193 AAA C-terminal domain E3H47_13685 PF07995 Glucose / Sorbosone dehydrogenase E3H47_13690 PF13411 MerR HTH family regulatory protein E3H47_13700 PF03692 Putative zinc- or iron-chelating domain E3H47_13705 PF07043 Protein of unknown function (DUF1328) E3H47_13715 PF01230 HIT domain E3H47_13720 PF00730 HhH-GPD superfamily base excision DNA repair protein E3H47_13720 PF10576 Iron-sulfur binding domain of endonuclease III E3H47_13720 PF00633 Helix-hairpin-helix motif E3H47_13720 PF14815 NUDIX domain E3H47_13735 PF03352 Methyladenine glycosylase E3H47_13740 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_13740 PF00107 Zinc-binding dehydrogenase E3H47_13755 PF03466 LysR substrate binding domain E3H47_13755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_13760 PF00248 Aldo/keto reductase family E3H47_13765 PF07690 Major Facilitator Superfamily E3H47_13775 PF01113 Dihydrodipicolinate reductase, N-terminus E3H47_13775 PF05173 Dihydrodipicolinate reductase, C-terminus E3H47_13785 PF00684 DnaJ central domain E3H47_13785 PF00226 DnaJ domain E3H47_13785 PF01556 DnaJ C terminal domain E3H47_13795 PF00873 AcrB/AcrD/AcrF family E3H47_13805 PF00440 Bacterial regulatory proteins, tetR family E3H47_13810 PF00311 Phosphoenolpyruvate carboxylase E3H47_13815 PF00860 Permease family E3H47_13820 PF03466 LysR substrate binding domain E3H47_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_13830 PF13419 Haloacid dehalogenase-like hydrolase E3H47_13840 PF00920 Dehydratase family E3H47_13845 PF02911 Formyl transferase, C-terminal domain E3H47_13845 PF00551 Formyl transferase E3H47_13850 PF01189 16S rRNA methyltransferase RsmB/F E3H47_13850 PF01029 NusB family E3H47_13855 PF02535 ZIP Zinc transporter E3H47_13865 PF00209 Sodium:neurotransmitter symporter family E3H47_13875 PF10005 zinc-ribbon domain E3H47_13875 PF15887 Putative zinc-binding metallo-peptidase E3H47_13915 PF01047 MarR family E3H47_13950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3H47_13960 PF07859 alpha/beta hydrolase fold E3H47_13975 PF01025 GrpE E3H47_13980 PF00012 Hsp70 protein E3H47_13990 PF13406 Transglycosylase SLT domain E3H47_13995 PF02222 ATP-grasp domain E3H47_13995 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3H47_14000 PF00731 AIR carboxylase E3H47_14010 PF02875 Mur ligase family, glutamate ligase domain E3H47_14010 PF08245 Mur ligase middle domain E3H47_14010 PF01225 Mur ligase family, catalytic domain E3H47_14015 PF13193 AMP-binding enzyme C-terminal domain E3H47_14015 PF00501 AMP-binding enzyme E3H47_14020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3H47_14020 PF02770 Acyl-CoA dehydrogenase, middle domain E3H47_14020 PF12806 Acetyl-CoA dehydrogenase C-terminal like E3H47_14020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3H47_14030 PF07690 Major Facilitator Superfamily E3H47_14035 PF00378 Enoyl-CoA hydratase/isomerase E3H47_14040 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain E3H47_14040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3H47_14040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3H47_14050 PF03741 Integral membrane protein TerC family E3H47_14055 PF01979 Amidohydrolase family E3H47_14060 PF00156 Phosphoribosyl transferase domain E3H47_14070 PF13098 Thioredoxin-like domain E3H47_14070 PF10411 Disulfide bond isomerase protein N-terminus E3H47_14075 PF01545 Cation efflux family E3H47_14080 PF02583 Metal-sensitive transcriptional repressor E3H47_14090 PF01926 50S ribosome-binding GTPase E3H47_14090 PF10396 GTP-binding protein TrmE N-terminus E3H47_14090 PF12631 MnmE helical domain E3H47_14095 PF02096 60Kd inner membrane protein E3H47_14095 PF14849 YidC periplasmic domain E3H47_14100 PF01809 Putative membrane protein insertion efficiency factor E3H47_14105 PF00825 Ribonuclease P E3H47_14110 PF00468 Ribosomal protein L34 E3H47_14155 PF13173 AAA domain E3H47_14155 PF13635 Domain of unknown function (DUF4143) E3H47_14190 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3H47_14205 PF13737 Transposase DDE domain E3H47_14245 PF07731 Multicopper oxidase E3H47_14245 PF07732 Multicopper oxidase E3H47_14245 PF00394 Multicopper oxidase E3H47_14285 PF00394 Multicopper oxidase E3H47_14285 PF07731 Multicopper oxidase E3H47_14285 PF07732 Multicopper oxidase E3H47_14295 PF00072 Response regulator receiver domain E3H47_14295 PF00486 Transcriptional regulatory protein, C terminal E3H47_14300 PF00672 HAMP domain E3H47_14300 PF00512 His Kinase A (phospho-acceptor) domain E3H47_14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_14305 PF13194 Domain of unknown function (DUF4010) E3H47_14350 PF00403 Heavy-metal-associated domain E3H47_14355 PF13737 Transposase DDE domain E3H47_14365 PF01323 DSBA-like thioredoxin domain E3H47_14375 PF08240 Alcohol dehydrogenase GroES-like domain E3H47_14375 PF00107 Zinc-binding dehydrogenase E3H47_14385 PF13610 DDE domain E3H47_14390 PF01545 Cation efflux family E3H47_14395 PF00873 AcrB/AcrD/AcrF family E3H47_14400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3H47_14405 PF02321 Outer membrane efflux protein E3H47_14415 PF13411 MerR HTH family regulatory protein E3H47_14420 PF01545 Cation efflux family E3H47_14430 PF07670 Nucleoside recognition E3H47_14430 PF02421 Ferrous iron transport protein B E3H47_14430 PF07664 Ferrous iron transport protein B C terminus E3H47_14455 PF04221 RelB antitoxin E3H47_14465 PF00239 Resolvase, N terminal domain E3H47_14465 PF02796 Helix-turn-helix domain of resolvase E3H47_14470 PF03960 ArsC family E3H47_14475 PF01022 Bacterial regulatory protein, arsR family E3H47_14485 PF01758 Sodium Bile acid symporter family E3H47_14490 PF03358 NADPH-dependent FMN reductase E3H47_14495 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_14525 PF13610 DDE domain E3H47_14535 PF01219 Prokaryotic diacylglycerol kinase E3H47_14545 PF00512 His Kinase A (phospho-acceptor) domain E3H47_14545 PF08521 Two-component sensor kinase N-terminal E3H47_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_14550 PF00486 Transcriptional regulatory protein, C terminal E3H47_14550 PF00072 Response regulator receiver domain E3H47_14555 PF00884 Sulfatase E3H47_14555 PF08019 Phosphoethanolamine transferase EptA/EptB E3H47_14585 PF02796 Helix-turn-helix domain of resolvase E3H47_14585 PF00239 Resolvase, N terminal domain E3H47_14600 PF00581 Rhodanese-like domain E3H47_14605 PF01925 Sulfite exporter TauE/SafE E3H47_14610 PF00753 Metallo-beta-lactamase superfamily E3H47_14620 PF04143 Sulphur transport E3H47_14635 PF13098 Thioredoxin-like domain E3H47_14640 PF00578 AhpC/TSA family E3H47_14645 PF11412 Disulphide bond corrector protein DsbC E3H47_14645 PF02683 Cytochrome C biogenesis protein transmembrane region E3H47_14650 PF00486 Transcriptional regulatory protein, C terminal E3H47_14650 PF00072 Response regulator receiver domain E3H47_14655 PF00512 His Kinase A (phospho-acceptor) domain E3H47_14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3H47_14655 PF08521 Two-component sensor kinase N-terminal E3H47_14680 PF05973 Phage derived protein Gp49-like (DUF891) E3H47_14720 PF02534 Type IV secretory system Conjugative DNA transfer E3H47_14725 PF00437 Type II/IV secretion system protein E3H47_14730 PF03743 Bacterial conjugation TrbI-like protein E3H47_14760 PF03135 CagE, TrbE, VirB family, component of type IV transporter system E3H47_14765 PF05101 Type IV secretory pathway, VirB3-like protein E3H47_14780 PF01751 Toprim domain E3H47_14780 PF01396 Topoisomerase DNA binding C4 zinc finger E3H47_14780 PF01131 DNA topoisomerase E3H47_14835 PF13614 AAA domain E3H47_14840 PF08535 KorB domain E3H47_14840 PF02195 ParB-like nuclease domain E3H47_14840 PF06613 KorB C-terminal beta-barrel domain E3H47_14865 PF00817 impB/mucB/samB family E3H47_14865 PF11799 impB/mucB/samB family C-terminal domain E3H47_14865 PF13438 Domain of unknown function (DUF4113) E3H47_14870 PF00717 Peptidase S24-like E3H47_14880 PF02384 N-6 DNA Methylase E3H47_14885 PF07669 Eco57I restriction-modification methylase E3H47_14905 PF13610 DDE domain E3H47_14925 PF02406 MmoB/DmpM family E3H47_14930 PF02332 Methane/Phenol/Toluene Hydroxylase E3H47_14935 PF06099 Phenol hydroxylase subunit E3H47_14940 PF06505 Activator of aromatic catabolism E3H47_14940 PF02830 V4R domain E3H47_14940 PF02954 Bacterial regulatory protein, Fis family E3H47_14940 PF00158 Sigma-54 interaction domain E3H47_14970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3H47_14970 PF18766 SWI2/SNF2 ATPase E3H47_14970 PF11867 Domain of unknown function (DUF3387) E3H47_14980 PF00717 Peptidase S24-like E3H47_14985 PF11799 impB/mucB/samB family C-terminal domain E3H47_14985 PF00817 impB/mucB/samB family E3H47_14985 PF13438 Domain of unknown function (DUF4113) E3H47_14990 PF05016 ParE toxin of type II toxin-antitoxin system, parDE E3H47_15020 PF00586 AIR synthase related protein, N-terminal domain E3H47_15020 PF02769 AIR synthase related protein, C-terminal domain E3H47_15035 PF00795 Carbon-nitrogen hydrolase E3H47_15045 PF00158 Sigma-54 interaction domain E3H47_15045 PF01590 GAF domain E3H47_15050 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3H47_15050 PF11867 Domain of unknown function (DUF3387) E3H47_15050 PF18766 SWI2/SNF2 ATPase E3H47_15080 PF13614 AAA domain E3H47_15105 PF13276 HTH-like domain E3H47_15105 PF13333 Integrase core domain E3H47_15105 PF00665 Integrase core domain E3H47_15135 PF00589 Phage integrase family E3H47_15135 PF13356 Arm DNA-binding domain E3H47_15140 PF13737 Transposase DDE domain E3H47_15150 PF04444 Catechol dioxygenase N terminus E3H47_15150 PF00775 Dioxygenase E3H47_15155 PF01926 50S ribosome-binding GTPase E3H47_15160 PF01926 50S ribosome-binding GTPase E3H47_15165 PF03466 LysR substrate binding domain E3H47_15165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3H47_15170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3H47_15170 PF13378 Enolase C-terminal domain-like E3H47_15175 PF02426 Muconolactone delta-isomerase E3H47_15180 PF01144 Coenzyme A transferase E3H47_15185 PF01144 Coenzyme A transferase E3H47_15190 PF00108 Thiolase, N-terminal domain E3H47_15190 PF02803 Thiolase, C-terminal domain E3H47_15195 PF12146 Serine aminopeptidase, S33 E3H47_15205 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system E3H47_15230 PF00239 Resolvase, N terminal domain E3H47_15230 PF02796 Helix-turn-helix domain of resolvase E3H47_15235 PF01526 Tn3 transposase DDE domain E3H47_15235 PF13700 Domain of unknown function (DUF4158) E3H47_15260 PF00440 Bacterial regulatory proteins, tetR family E3H47_15260 PF17932 Tetracyclin repressor-like, C-terminal domain E3H47_15285 PF14759 Reductase C-terminal E3H47_15285 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3H47_15290 PF00067 Cytochrome P450 E3H47_15295 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_15300 PF12833 Helix-turn-helix domain E3H47_15300 PF02311 AraC-like ligand binding domain E3H47_15305 PF00239 Resolvase, N terminal domain E3H47_15305 PF02796 Helix-turn-helix domain of resolvase E3H47_15310 PF01695 IstB-like ATP binding protein E3H47_15315 PF13700 Domain of unknown function (DUF4158) E3H47_15315 PF01526 Tn3 transposase DDE domain E3H47_15320 PF00239 Resolvase, N terminal domain E3H47_15320 PF02796 Helix-turn-helix domain of resolvase E3H47_15355 PF00175 Oxidoreductase NAD-binding domain E3H47_15355 PF00111 2Fe-2S iron-sulfur cluster binding domain E3H47_15355 PF00970 Oxidoreductase FAD-binding domain