locus-tag class description IC778_00005 PF11638 DnaA N-terminal domain IC778_00005 PF08299 Bacterial dnaA protein helix-turn-helix IC778_00005 PF00308 Bacterial dnaA protein IC778_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain IC778_00010 PF02767 DNA polymerase III beta subunit, central domain IC778_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain IC778_00015 PF02463 RecF/RecN/SMC N terminal domain IC778_00020 PF01751 Toprim domain IC778_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_00020 PF18053 DNA gyrase B subunit insert domain IC778_00020 PF00986 DNA gyrase B subunit, carboxyl terminus IC778_00020 PF00204 DNA gyrase B IC778_00030 PF09335 SNARE associated Golgi protein IC778_00035 PF00005 ABC transporter IC778_00035 PF12848 ABC transporter IC778_00055 PF01521 Iron-sulphur cluster biosynthesis IC778_00060 PF00561 alpha/beta hydrolase fold IC778_00065 PF03702 Anhydro-N-acetylmuramic acid kinase IC778_00070 PF00579 tRNA synthetases class I (W and Y) IC778_00110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_00115 PF01252 Signal peptidase (SPase) II IC778_00120 PF06827 Zinc finger found in FPG and IleRS IC778_00120 PF00133 tRNA synthetases class I (I, L, M and V) IC778_00120 PF08264 Anticodon-binding domain of tRNA IC778_00125 PF06574 FAD synthetase IC778_00125 PF01687 Riboflavin kinase IC778_00135 PF01048 Phosphorylase superfamily IC778_00140 PF08362 YcdC-like protein, C-terminal region IC778_00140 PF00440 Bacterial regulatory proteins, tetR family IC778_00145 PF00005 ABC transporter IC778_00150 PF00528 Binding-protein-dependent transport system inner membrane component IC778_00155 PF00296 Luciferase-like monooxygenase IC778_00160 PF09084 NMT1/THI5 like IC778_00165 PF09084 NMT1/THI5 like IC778_00170 PF00583 Acetyltransferase (GNAT) family IC778_00170 PF00696 Amino acid kinase family IC778_00185 PF00106 short chain dehydrogenase IC778_00190 PF13419 Haloacid dehalogenase-like hydrolase IC778_00200 PF01323 DSBA-like thioredoxin domain IC778_00205 PF00440 Bacterial regulatory proteins, tetR family IC778_00205 PF08360 QacR-like protein, C-terminal region IC778_00210 PF00440 Bacterial regulatory proteins, tetR family IC778_00215 PF00175 Oxidoreductase NAD-binding domain IC778_00220 PF00487 Fatty acid desaturase IC778_00225 PF01138 3' exoribonuclease family, domain 1 IC778_00225 PF03725 3' exoribonuclease family, domain 2 IC778_00230 PF04185 Phosphoesterase family IC778_00230 PF05506 Domain of unknown function (DUF756) IC778_00240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IC778_00240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IC778_00245 PF01510 N-acetylmuramoyl-L-alanine amidase IC778_00250 PF03023 Lipid II flippase MurJ IC778_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IC778_00260 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IC778_00260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_00265 PF13807 G-rich domain on putative tyrosine kinase IC778_00265 PF02706 Chain length determinant protein IC778_00265 PF13614 AAA domain IC778_00270 PF01451 Low molecular weight phosphotyrosine protein phosphatase IC778_00275 PF02563 Polysaccharide biosynthesis/export protein IC778_00275 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IC778_00275 PF10531 SLBB domain IC778_00280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IC778_00280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IC778_00280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IC778_00285 PF16363 GDP-mannose 4,6 dehydratase IC778_00290 PF04321 RmlD substrate binding domain IC778_00295 PF00483 Nucleotidyl transferase IC778_00300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IC778_00305 PF08485 Polysaccharide biosynthesis protein C-terminal IC778_00305 PF02719 Polysaccharide biosynthesis protein IC778_00310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IC778_00315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IC778_00340 PF00535 Glycosyl transferase family 2 IC778_00345 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_00350 PF01370 NAD dependent epimerase/dehydratase family IC778_00360 PF02397 Bacterial sugar transferase IC778_00365 PF00483 Nucleotidyl transferase IC778_00370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IC778_00370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IC778_00370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IC778_00375 PF00342 Phosphoglucose isomerase IC778_00385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IC778_00385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IC778_00385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IC778_00385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IC778_00390 PF02652 L-lactate permease IC778_00395 PF07729 FCD domain IC778_00395 PF00392 Bacterial regulatory proteins, gntR family IC778_00400 PF01070 FMN-dependent dehydrogenase IC778_00405 PF09330 D-lactate dehydrogenase, membrane binding IC778_00405 PF01565 FAD binding domain IC778_00410 PF00155 Aminotransferase class I and II IC778_00420 PF07729 FCD domain IC778_00420 PF00392 Bacterial regulatory proteins, gntR family IC778_00430 PF00285 Citrate synthase, C-terminal domain IC778_00435 PF00330 Aconitase family (aconitate hydratase) IC778_00435 PF00694 Aconitase C-terminal domain IC778_00475 PF00109 Beta-ketoacyl synthase, N-terminal domain IC778_00475 PF02801 Beta-ketoacyl synthase, C-terminal domain IC778_00480 PF00106 short chain dehydrogenase IC778_00485 PF08361 MAATS-type transcriptional repressor, C-terminal region IC778_00485 PF00440 Bacterial regulatory proteins, tetR family IC778_00505 PF00849 RNA pseudouridylate synthase IC778_00520 PF07715 TonB-dependent Receptor Plug Domain IC778_00520 PF00593 TonB dependent receptor IC778_00530 PF01037 Lrp/AsnC ligand binding domain IC778_00535 PF01266 FAD dependent oxidoreductase IC778_00540 PF01168 Alanine racemase, N-terminal domain IC778_00540 PF00842 Alanine racemase, C-terminal domain IC778_00545 PF01042 Endoribonuclease L-PSP IC778_00550 PF00324 Amino acid permease IC778_00555 PF00324 Amino acid permease IC778_00565 PF00171 Aldehyde dehydrogenase family IC778_00570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IC778_00570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IC778_00575 PF00501 AMP-binding enzyme IC778_00575 PF13193 AMP-binding enzyme C-terminal domain IC778_00580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_00580 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_00580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_00585 PF00378 Enoyl-CoA hydratase/isomerase IC778_00590 PF00378 Enoyl-CoA hydratase/isomerase IC778_00595 PF00083 Sugar (and other) transporter IC778_00595 PF07690 Major Facilitator Superfamily IC778_00600 PF00765 Autoinducer synthase IC778_00610 PF00196 Bacterial regulatory proteins, luxR family IC778_00610 PF03472 Autoinducer binding domain IC778_00615 PF00501 AMP-binding enzyme IC778_00620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_00620 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_00620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_00625 PF08242 Methyltransferase domain IC778_00625 PF16197 Ketoacyl-synthetase C-terminal extension IC778_00625 PF00975 Thioesterase domain IC778_00625 PF14765 Polyketide synthase dehydratase IC778_00625 PF00550 Phosphopantetheine attachment site IC778_00625 PF00109 Beta-ketoacyl synthase, N-terminal domain IC778_00625 PF02801 Beta-ketoacyl synthase, C-terminal domain IC778_00630 PF00975 Thioesterase domain IC778_00630 PF00550 Phosphopantetheine attachment site IC778_00630 PF00501 AMP-binding enzyme IC778_00630 PF13193 AMP-binding enzyme C-terminal domain IC778_00630 PF00668 Condensation domain IC778_00645 PF16363 GDP-mannose 4,6 dehydratase IC778_00650 PF01648 4'-phosphopantetheinyl transferase superfamily IC778_00665 PF01722 BolA-like protein IC778_00675 PF13614 AAA domain IC778_00690 PF09335 SNARE associated Golgi protein IC778_00695 PF07681 DoxX IC778_00700 PF04286 Protein of unknown function (DUF445) IC778_00700 PF04286 Protein of unknown function (DUF445) IC778_00705 PF02540 NAD synthase IC778_00705 PF00958 GMP synthase C terminal domain IC778_00705 PF00117 Glutamine amidotransferase class-I IC778_00710 PF13302 Acetyltransferase (GNAT) domain IC778_00715 PF03551 Transcriptional regulator PadR-like family IC778_00720 PF01475 Ferric uptake regulator family IC778_00730 PF02678 Pirin IC778_00730 PF05726 Pirin C-terminal cupin domain IC778_00750 PF05746 DALR anticodon binding domain IC778_00750 PF03485 Arginyl tRNA synthetase N terminal domain IC778_00750 PF00750 tRNA synthetases class I (R) IC778_00755 PF00390 Malic enzyme, N-terminal domain IC778_00755 PF03949 Malic enzyme, NAD binding domain IC778_00765 PF00665 Integrase core domain IC778_00765 PF13936 Helix-turn-helix domain IC778_00775 PF01810 LysE type translocator IC778_00780 PF00950 ABC 3 transport family IC778_00785 PF00005 ABC transporter IC778_00805 PF00119 ATP synthase A chain IC778_00810 PF00137 ATP synthase subunit C IC778_00815 PF00430 ATP synthase B/B' CF(0) IC778_00820 PF00213 ATP synthase delta (OSCP) subunit IC778_00825 PF02874 ATP synthase alpha/beta family, beta-barrel domain IC778_00825 PF00306 ATP synthase alpha/beta chain, C terminal domain IC778_00825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IC778_00830 PF00231 ATP synthase IC778_00835 PF02874 ATP synthase alpha/beta family, beta-barrel domain IC778_00835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IC778_00840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IC778_00850 PF00255 Glutathione peroxidase IC778_00860 PF07690 Major Facilitator Superfamily IC778_00865 PF00440 Bacterial regulatory proteins, tetR family IC778_00870 PF00892 EamA-like transporter family IC778_00875 PF01300 Telomere recombination IC778_00880 PF17782 DprA winged helix domain IC778_00880 PF02481 DNA recombination-mediator protein A IC778_00890 PF01327 Polypeptide deformylase IC778_00915 PF00440 Bacterial regulatory proteins, tetR family IC778_00950 PF00291 Pyridoxal-phosphate dependent enzyme IC778_00965 PF03358 NADPH-dependent FMN reductase IC778_00985 PF08497 Radical SAM N-terminal IC778_00985 PF04055 Radical SAM superfamily IC778_00985 PF11842 Domain of unknown function (DUF3362) IC778_01000 PF00817 impB/mucB/samB family IC778_01000 PF11799 impB/mucB/samB family C-terminal domain IC778_01000 PF11798 IMS family HHH motif IC778_01010 PF07690 Major Facilitator Superfamily IC778_01015 PF03641 Possible lysine decarboxylase IC778_01020 PF03741 Integral membrane protein TerC family IC778_01020 PF03471 Transporter associated domain IC778_01025 PF02810 SEC-C motif IC778_01030 PF03458 UPF0126 domain IC778_01035 PF07690 Major Facilitator Superfamily IC778_01040 PF03989 DNA gyrase C-terminal domain, beta-propeller IC778_01040 PF00521 DNA gyrase/topoisomerase IV, subunit A IC778_01045 PF13193 AMP-binding enzyme C-terminal domain IC778_01045 PF00501 AMP-binding enzyme IC778_01060 PF00719 Inorganic pyrophosphatase IC778_01065 PF03573 outer membrane porin, OprD family IC778_01075 PF00701 Dihydrodipicolinate synthetase family IC778_01080 PF00596 Class II Aldolase and Adducin N-terminal domain IC778_01085 PF00392 Bacterial regulatory proteins, gntR family IC778_01085 PF00155 Aminotransferase class I and II IC778_01090 PF03358 NADPH-dependent FMN reductase IC778_01095 PF01078 Magnesium chelatase, subunit ChlI IC778_01095 PF13335 Magnesium chelatase, subunit ChlI C-terminal IC778_01105 PF00543 Nitrogen regulatory protein P-II IC778_01110 PF00909 Ammonium Transporter Family IC778_01115 PF03477 ATP cone domain IC778_01120 PF01872 RibD C-terminal domain IC778_01120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IC778_01130 PF00677 Lumazine binding domain IC778_01155 PF03739 Lipopolysaccharide export system permease LptF/LptG IC778_01160 PF03739 Lipopolysaccharide export system permease LptF/LptG IC778_01165 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IC778_01165 PF01676 Metalloenzyme superfamily IC778_01170 PF00595 PDZ domain IC778_01170 PF03572 Peptidase family S41 IC778_01175 PF02954 Bacterial regulatory protein, Fis family IC778_01175 PF00072 Response regulator receiver domain IC778_01175 PF00158 Sigma-54 interaction domain IC778_01180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_01180 PF00512 His Kinase A (phospho-acceptor) domain IC778_01185 PF00072 Response regulator receiver domain IC778_01185 PF00196 Bacterial regulatory proteins, luxR family IC778_01190 PF00768 D-alanyl-D-alanine carboxypeptidase IC778_01195 PF00291 Pyridoxal-phosphate dependent enzyme IC778_01200 PF01842 ACT domain IC778_01200 PF00742 Homoserine dehydrogenase IC778_01200 PF03447 Homoserine dehydrogenase, NAD binding domain IC778_01205 PF10411 Disulfide bond isomerase protein N-terminus IC778_01205 PF13098 Thioredoxin-like domain IC778_01210 PF02899 Phage integrase, N-terminal SAM-like domain IC778_01210 PF00589 Phage integrase family IC778_01220 PF07664 Ferrous iron transport protein B C terminus IC778_01220 PF07670 Nucleoside recognition IC778_01220 PF02421 Ferrous iron transport protein B IC778_01230 PF08245 Mur ligase middle domain IC778_01230 PF02875 Mur ligase family, glutamate ligase domain IC778_01240 PF00749 tRNA synthetases class I (E and Q), catalytic domain IC778_01245 PF01258 Prokaryotic dksA/traR C4-type zinc finger IC778_01250 PF00149 Calcineurin-like phosphoesterase IC778_01255 PF00293 NUDIX domain IC778_01260 PF01964 Radical SAM ThiC family IC778_01260 PF13667 ThiC-associated domain IC778_01275 PF00892 EamA-like transporter family IC778_01285 PF02321 Outer membrane efflux protein IC778_01290 PF01895 PhoU domain IC778_01295 PF04362 Bacterial Fe(2+) trafficking IC778_01300 PF14698 Argininosuccinate lyase C-terminal IC778_01300 PF00206 Lyase IC778_01305 PF06580 Histidine kinase IC778_01305 PF07694 5TMR of 5TMR-LYT IC778_01305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_01310 PF00072 Response regulator receiver domain IC778_01310 PF04397 LytTr DNA-binding domain IC778_01315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IC778_01315 PF03900 Porphobilinogen deaminase, C-terminal domain IC778_01340 PF00816 H-NS histone family IC778_01355 PF03958 Bacterial type II/III secretion system short domain IC778_01355 PF00263 Bacterial type II and III secretion system protein IC778_01360 PF00498 FHA domain IC778_01360 PF12401 Protein of unknown function (DUF2662) IC778_01365 PF13419 Haloacid dehalogenase-like hydrolase IC778_01370 PF00425 chorismate binding enzyme IC778_01370 PF04715 Anthranilate synthase component I, N terminal region IC778_01395 PF00009 Elongation factor Tu GTP binding domain IC778_01395 PF03143 Elongation factor Tu C-terminal domain IC778_01395 PF03144 Elongation factor Tu domain 2 IC778_01405 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IC778_01410 PF02357 Transcription termination factor nusG IC778_01410 PF00467 KOW motif IC778_01415 PF00298 Ribosomal protein L11, RNA binding domain IC778_01415 PF03946 Ribosomal protein L11, N-terminal domain IC778_01420 PF00687 Ribosomal protein L1p/L10e family IC778_01425 PF00466 Ribosomal protein L10 IC778_01430 PF00542 Ribosomal protein L7/L12 C-terminal domain IC778_01430 PF16320 Ribosomal protein L7/L12 dimerisation domain IC778_01435 PF10385 RNA polymerase beta subunit external 1 domain IC778_01435 PF04560 RNA polymerase Rpb2, domain 7 IC778_01435 PF04565 RNA polymerase Rpb2, domain 3 IC778_01435 PF00562 RNA polymerase Rpb2, domain 6 IC778_01435 PF04561 RNA polymerase Rpb2, domain 2 IC778_01435 PF04563 RNA polymerase beta subunit IC778_01440 PF04998 RNA polymerase Rpb1, domain 5 IC778_01440 PF05000 RNA polymerase Rpb1, domain 4 IC778_01440 PF04997 RNA polymerase Rpb1, domain 1 IC778_01440 PF00623 RNA polymerase Rpb1, domain 2 IC778_01440 PF04983 RNA polymerase Rpb1, domain 3 IC778_01460 PF00561 alpha/beta hydrolase fold IC778_01465 PF13726 Na+-H+ antiporter family IC778_01465 PF03553 Na+/H+ antiporter family IC778_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_01480 PF00183 Hsp90 protein IC778_01495 PF01323 DSBA-like thioredoxin domain IC778_01505 PF09278 MerR, DNA binding IC778_01505 PF00376 MerR family regulatory protein IC778_01520 PF02803 Thiolase, C-terminal domain IC778_01520 PF00108 Thiolase, N-terminal domain IC778_01525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_01525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_01525 PF00378 Enoyl-CoA hydratase/isomerase IC778_01545 PF08459 UvrC Helix-hairpin-helix N-terminal IC778_01545 PF02151 UvrB/uvrC motif IC778_01545 PF01541 GIY-YIG catalytic domain IC778_01555 PF01066 CDP-alcohol phosphatidyltransferase IC778_01570 PF04632 Fusaric acid resistance protein family IC778_01580 PF13533 Biotin-lipoyl like IC778_01585 PF03652 Holliday junction resolvase IC778_01590 PF02622 Uncharacterized ACR, COG1678 IC778_01595 PF02463 RecF/RecN/SMC N terminal domain IC778_01600 PF06865 Pyrimidine/purine nucleoside phosphorylase IC778_01605 PF08032 RNA 2'-O ribose methyltransferase substrate binding IC778_01605 PF00588 SpoU rRNA Methylase family IC778_01615 PF01121 Dephospho-CoA kinase IC778_01620 PF01478 Type IV leader peptidase family IC778_01620 PF06750 Bacterial Peptidase A24 N-terminal domain IC778_01625 PF00482 Type II secretion system (T2SS), protein F IC778_01630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IC778_01630 PF00437 Type II/IV secretion system protein IC778_01635 PF00121 Triosephosphate isomerase IC778_01640 PF03840 Preprotein translocase SecG subunit IC778_01660 PF17384 RimP C-terminal SH3 domain IC778_01660 PF02576 RimP N-terminal domain IC778_01665 PF00575 S1 RNA binding domain IC778_01665 PF08529 NusA N-terminal domain IC778_01665 PF13184 NusA-like KH domain IC778_01670 PF11987 Translation-initiation factor 2 IC778_01670 PF00009 Elongation factor Tu GTP binding domain IC778_01670 PF08364 Bacterial translation initiation factor IF-2 associated region IC778_01670 PF04760 Translation initiation factor IF-2, N-terminal region IC778_01675 PF02033 Ribosome-binding factor A IC778_01680 PF03334 Na+/H+ antiporter subunit IC778_01685 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IC778_01690 PF01899 Na+/H+ ion antiporter subunit IC778_01695 PF00361 Proton-conducting membrane transporter IC778_01700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IC778_01705 PF00361 Proton-conducting membrane transporter IC778_01705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IC778_01705 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IC778_01705 PF13244 Domain of unknown function (DUF4040) IC778_01720 PF01502 Phosphoribosyl-AMP cyclohydrolase IC778_01730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IC778_01735 PF01494 FAD binding domain IC778_01740 PF03109 ABC1 family IC778_01750 PF01209 ubiE/COQ5 methyltransferase family IC778_01760 PF03976 Polyphosphate kinase 2 (PPK2) IC778_01765 PF07690 Major Facilitator Superfamily IC778_01775 PF17946 RecC C-terminal domain IC778_01780 PF00580 UvrD/REP helicase N-terminal domain IC778_01780 PF12705 PD-(D/E)XK nuclease superfamily IC778_01780 PF13361 UvrD-like helicase C-terminal domain IC778_01785 PF13538 UvrD-like helicase C-terminal domain IC778_01790 PF00144 Beta-lactamase IC778_01795 PF00312 Ribosomal protein S15 IC778_01800 PF03725 3' exoribonuclease family, domain 2 IC778_01800 PF00575 S1 RNA binding domain IC778_01800 PF00013 KH domain IC778_01800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IC778_01800 PF01138 3' exoribonuclease family, domain 1 IC778_01805 PF01544 CorA-like Mg2+ transporter protein IC778_01815 PF01556 DnaJ C terminal domain IC778_01815 PF00226 DnaJ domain IC778_01825 PF01430 Hsp33 protein IC778_01830 PF00999 Sodium/hydrogen exchanger family IC778_01830 PF02254 TrkA-N domain IC778_01835 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IC778_01835 PF18074 Primosomal protein N C-terminal domain IC778_01835 PF17764 3′ DNA-binding domain (3′BD) IC778_01835 PF00271 Helicase conserved C-terminal domain IC778_01835 PF00270 DEAD/DEAH box helicase IC778_01840 PF00482 Type II secretion system (T2SS), protein F IC778_01845 PF07963 Prokaryotic N-terminal methylation motif IC778_01845 PF08334 Type II secretion system (T2SS), protein G IC778_01860 PF01588 Putative tRNA binding domain IC778_01865 PF00795 Carbon-nitrogen hydrolase IC778_01870 PF00571 CBS domain IC778_01870 PF03471 Transporter associated domain IC778_01875 PF01206 Sulfurtransferase TusA IC778_01895 PF01177 Asp/Glu/Hydantoin racemase IC778_01905 PF00762 Ferrochelatase IC778_01910 PF00753 Metallo-beta-lactamase superfamily IC778_01915 PF03884 DNA gyrase inhibitor YacG IC778_01925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IC778_01925 PF13247 4Fe-4S dicluster domain IC778_01925 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_01935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IC778_01950 PF01197 Ribosomal protein L31 IC778_01955 PF03109 ABC1 family IC778_01960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_01960 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_01965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_01965 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_01965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_01970 PF01554 MatE IC778_01980 PF04055 Radical SAM superfamily IC778_01980 PF06969 HemN C-terminal domain IC778_01985 PF00106 short chain dehydrogenase IC778_01990 PF03466 LysR substrate binding domain IC778_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_02005 PF00501 AMP-binding enzyme IC778_02005 PF13193 AMP-binding enzyme C-terminal domain IC778_02010 PF12111 Polyribonucleotide phosphorylase C terminal IC778_02010 PF00575 S1 RNA binding domain IC778_02010 PF10150 Ribonuclease E/G family IC778_02015 PF01479 S4 domain IC778_02015 PF00849 RNA pseudouridylate synthase IC778_02025 PF08279 HTH domain IC778_02025 PF13280 WYL domain IC778_02030 PF02798 Glutathione S-transferase, N-terminal domain IC778_02040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_02040 PF03466 LysR substrate binding domain IC778_02045 PF12706 Beta-lactamase superfamily domain IC778_02050 PF00141 Peroxidase IC778_02060 PF00293 NUDIX domain IC778_02085 PF03466 LysR substrate binding domain IC778_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_02095 PF00330 Aconitase family (aconitate hydratase) IC778_02100 PF00694 Aconitase C-terminal domain IC778_02110 PF00180 Isocitrate/isopropylmalate dehydrogenase IC778_02125 PF01176 Translation initiation factor 1A / IF-1 IC778_02135 PF01416 tRNA pseudouridine synthase IC778_02155 PF02774 Semialdehyde dehydrogenase, dimerisation domain IC778_02155 PF01118 Semialdehyde dehydrogenase, NAD binding domain IC778_02165 PF00375 Sodium:dicarboxylate symporter family IC778_02175 PF03279 Bacterial lipid A biosynthesis acyltransferase IC778_02180 PF01810 LysE type translocator IC778_02190 PF00005 ABC transporter IC778_02190 PF16326 ABC transporter C-terminal domain IC778_02190 PF12848 ABC transporter IC778_02195 PF04102 SlyX IC778_02200 PF08240 Alcohol dehydrogenase GroES-like domain IC778_02200 PF00107 Zinc-binding dehydrogenase IC778_02205 PF01638 HxlR-like helix-turn-helix IC778_02215 PF08272 Topoisomerase I zinc-ribbon-like IC778_02215 PF01396 Topoisomerase DNA binding C4 zinc finger IC778_02215 PF01751 Toprim domain IC778_02215 PF01131 DNA topoisomerase IC778_02230 PF00580 UvrD/REP helicase N-terminal domain IC778_02230 PF13361 UvrD-like helicase C-terminal domain IC778_02235 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IC778_02255 PF00999 Sodium/hydrogen exchanger family IC778_02255 PF02254 TrkA-N domain IC778_02260 PF00471 Ribosomal protein L33 IC778_02265 PF00830 Ribosomal L28 family IC778_02270 PF00171 Aldehyde dehydrogenase family IC778_02280 PF01842 ACT domain IC778_02280 PF00551 Formyl transferase IC778_02290 PF01618 MotA/TolQ/ExbB proton channel family IC778_02295 PF02472 Biopolymer transport protein ExbD/TolR IC778_02300 PF01625 Peptide methionine sulfoxide reductase IC778_02320 PF00186 Dihydrofolate reductase IC778_02325 PF00303 Thymidylate synthase IC778_02340 PF01790 Prolipoprotein diacylglyceryl transferase IC778_02355 PF00902 Sec-independent protein translocase protein (TatC) IC778_02360 PF02416 mttA/Hcf106 family IC778_02365 PF02416 mttA/Hcf106 family IC778_02375 PF01725 Ham1 family IC778_02385 PF00561 alpha/beta hydrolase fold IC778_02385 PF07021 Methionine biosynthesis protein MetW IC778_02390 PF00561 alpha/beta hydrolase fold IC778_02395 PF08502 LeuA allosteric (dimerisation) domain IC778_02395 PF00682 HMGL-like IC778_02400 PF13640 2OG-Fe(II) oxygenase superfamily IC778_02400 PF18331 PKHD-type hydroxylase C-terminal domain IC778_02405 PF07715 TonB-dependent Receptor Plug Domain IC778_02405 PF00593 TonB dependent receptor IC778_02410 PF05697 Bacterial trigger factor protein (TF) IC778_02410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_02410 PF05698 Bacterial trigger factor protein (TF) C-terminus IC778_02415 PF00574 Clp protease IC778_02420 PF06689 ClpX C4-type zinc finger IC778_02420 PF07724 AAA domain (Cdc48 subfamily) IC778_02420 PF10431 C-terminal, D2-small domain, of ClpB protein IC778_02435 PF05683 Fumarase C-terminus IC778_02435 PF05681 Fumarate hydratase (Fumerase) IC778_02440 PF01515 Phosphate acetyl/butaryl transferase IC778_02440 PF07085 DRTGG domain IC778_02445 PF00871 Acetokinase family IC778_02450 PF00920 Dehydratase family IC778_02455 PF01081 KDPG and KHG aldolase IC778_02460 PF02447 GntP family permease IC778_02465 PF01202 Shikimate kinase IC778_02470 PF00171 Aldehyde dehydrogenase family IC778_02475 PF00171 Aldehyde dehydrogenase family IC778_02490 PF00933 Glycosyl hydrolase family 3 N terminal domain IC778_02495 PF17804 Tail specific protease N-terminal domain IC778_02495 PF03572 Peptidase family S41 IC778_02495 PF00595 PDZ domain IC778_02495 PF11818 C-terminal domain of tail specific protease (DUF3340) IC778_02500 PF13439 Glycosyltransferase Family 4 IC778_02500 PF00534 Glycosyl transferases group 1 IC778_02505 PF01569 PAP2 superfamily IC778_02510 PF04384 Iron-sulphur cluster assembly IC778_02515 PF00334 Nucleoside diphosphate kinase IC778_02520 PF04055 Radical SAM superfamily IC778_02530 PF13464 Domain of unknown function (DUF4115) IC778_02535 PF04551 GcpE protein IC778_02540 PF03129 Anticodon binding domain IC778_02540 PF13393 Histidyl-tRNA synthetase IC778_02550 PF13360 PQQ-like domain IC778_02555 PF01926 50S ribosome-binding GTPase IC778_02555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IC778_02565 PF02556 Preprotein translocase subunit SecB IC778_02570 PF00462 Glutaredoxin IC778_02580 PF03193 RsgA GTPase IC778_02585 PF00929 Exonuclease IC778_02600 PF02321 Outer membrane efflux protein IC778_02605 PF12704 MacB-like periplasmic core domain IC778_02605 PF02687 FtsX-like permease family IC778_02605 PF00005 ABC transporter IC778_02610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_02625 PF08264 Anticodon-binding domain of tRNA IC778_02625 PF00133 tRNA synthetases class I (I, L, M and V) IC778_02625 PF13603 Leucyl-tRNA synthetase, Domain 2 IC778_02625 PF09334 tRNA synthetases class I (M) IC778_02635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IC778_02635 PF00205 Thiamine pyrophosphate enzyme, central domain IC778_02635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IC778_02640 PF10369 Small subunit of acetolactate synthase IC778_02645 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IC778_02645 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IC778_02680 PF00009 Elongation factor Tu GTP binding domain IC778_02680 PF03144 Elongation factor Tu domain 2 IC778_02680 PF16658 Class II release factor RF3, C-terminal domain IC778_02695 PF01026 TatD related DNase IC778_02700 PF00330 Aconitase family (aconitate hydratase) IC778_02700 PF00694 Aconitase C-terminal domain IC778_02705 PF00899 ThiF family IC778_02715 PF03466 LysR substrate binding domain IC778_02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_02725 PF01207 Dihydrouridine synthase (Dus) IC778_02730 PF00589 Phage integrase family IC778_02805 PF00529 HlyD membrane-fusion protein of T1SS IC778_02805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_02810 PF00873 AcrB/AcrD/AcrF family IC778_02830 PF07690 Major Facilitator Superfamily IC778_02845 PF01545 Cation efflux family IC778_02850 PF02417 Chromate transporter IC778_02855 PF09828 Chromate resistance exported protein IC778_02870 PF07690 Major Facilitator Superfamily IC778_02880 PF00892 EamA-like transporter family IC778_02885 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IC778_02885 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IC778_02890 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IC778_02895 PF02233 NAD(P) transhydrogenase beta subunit IC778_02900 PF00106 short chain dehydrogenase IC778_02915 PF01261 Xylose isomerase-like TIM barrel IC778_02920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IC778_02920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IC778_02925 PF00378 Enoyl-CoA hydratase/isomerase IC778_02930 PF00072 Response regulator receiver domain IC778_02930 PF00512 His Kinase A (phospho-acceptor) domain IC778_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_02930 PF00672 HAMP domain IC778_02930 PF01627 Hpt domain IC778_02930 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IC778_02935 PF00291 Pyridoxal-phosphate dependent enzyme IC778_02945 PF05958 tRNA (Uracil-5-)-methyltransferase IC778_02950 PF02824 TGS domain IC778_02950 PF04607 Region found in RelA / SpoT proteins IC778_02950 PF13291 ACT domain IC778_02960 PF03819 MazG nucleotide pyrophosphohydrolase domain IC778_02970 PF12627 Probable RNA and SrmB- binding site of polymerase A IC778_02970 PF01743 Poly A polymerase head domain IC778_02970 PF12626 Polymerase A arginine-rich C-terminus IC778_02975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IC778_02980 PF02548 Ketopantoate hydroxymethyltransferase IC778_02985 PF02569 Pantoate-beta-alanine ligase IC778_02990 PF03668 P-loop ATPase protein family IC778_02995 PF00381 PTS HPr component phosphorylation site IC778_03000 PF04751 Protein of unknown function (DUF615) IC778_03005 PF00501 AMP-binding enzyme IC778_03005 PF13193 AMP-binding enzyme C-terminal domain IC778_03010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IC778_03010 PF03129 Anticodon binding domain IC778_03010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IC778_03010 PF02824 TGS domain IC778_03015 PF05198 Translation initiation factor IF-3, N-terminal domain IC778_03015 PF00707 Translation initiation factor IF-3, C-terminal domain IC778_03020 PF00043 Glutathione S-transferase, C-terminal domain IC778_03020 PF02798 Glutathione S-transferase, N-terminal domain IC778_03025 PF09335 SNARE associated Golgi protein IC778_03030 PF07690 Major Facilitator Superfamily IC778_03035 PF01632 Ribosomal protein L35 IC778_03040 PF00453 Ribosomal protein L20 IC778_03065 PF03484 tRNA synthetase B5 domain IC778_03065 PF03483 B3/4 domain IC778_03065 PF03147 Ferredoxin-fold anticodon binding domain IC778_03065 PF01588 Putative tRNA binding domain IC778_03065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IC778_03070 PF00216 Bacterial DNA-binding protein IC778_03085 PF07498 Rho termination factor, N-terminal domain IC778_03085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IC778_03085 PF07497 Rho termination factor, RNA-binding domain IC778_03090 PF00085 Thioredoxin IC778_03095 PF02541 Ppx/GppA phosphatase family IC778_03100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IC778_03105 PF11734 TilS substrate C-terminal domain IC778_03105 PF09179 TilS substrate binding domain IC778_03105 PF01171 PP-loop family IC778_03110 PF14748 Pyrroline-5-carboxylate reductase dimerisation IC778_03110 PF03807 NADP oxidoreductase coenzyme F420-dependent IC778_03115 PF02325 YGGT family IC778_03140 PF00437 Type II/IV secretion system protein IC778_03145 PF02566 OsmC-like protein IC778_03150 PF01047 MarR family IC778_03160 PF00795 Carbon-nitrogen hydrolase IC778_03205 PF04552 Sigma-54, DNA binding domain IC778_03205 PF04963 Sigma-54 factor, core binding domain IC778_03205 PF00309 Sigma-54 factor, Activator interacting domain (AID) IC778_03210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IC778_03215 PF01722 BolA-like protein IC778_03220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IC778_03225 PF01634 ATP phosphoribosyltransferase IC778_03230 PF00815 Histidinol dehydrogenase IC778_03235 PF00155 Aminotransferase class I and II IC778_03240 PF04715 Anthranilate synthase component I, N terminal region IC778_03240 PF00425 chorismate binding enzyme IC778_03280 PF00293 NUDIX domain IC778_03285 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_03290 PF00814 Glycoprotease family IC778_03295 PF04445 Putative SAM-dependent methyltransferase IC778_03305 PF00756 Putative esterase IC778_03315 PF00834 Ribulose-phosphate 3 epimerase family IC778_03330 PF00394 Multicopper oxidase IC778_03330 PF07731 Multicopper oxidase IC778_03330 PF07732 Multicopper oxidase IC778_03345 PF00893 Small Multidrug Resistance protein IC778_03355 PF00665 Integrase core domain IC778_03355 PF13936 Helix-turn-helix domain IC778_03365 PF01960 ArgJ family IC778_03370 PF02445 Quinolinate synthetase A protein IC778_03400 PF08240 Alcohol dehydrogenase GroES-like domain IC778_03400 PF00107 Zinc-binding dehydrogenase IC778_03405 PF03466 LysR substrate binding domain IC778_03405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_03410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_03410 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_03415 PF07690 Major Facilitator Superfamily IC778_03420 PF02515 CoA-transferase family III IC778_03430 PF00440 Bacterial regulatory proteins, tetR family IC778_03430 PF17932 Tetracyclin repressor-like, C-terminal domain IC778_03445 PF00890 FAD binding domain IC778_03445 PF14537 Cytochrome c3 IC778_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03450 PF03466 LysR substrate binding domain IC778_03460 PF07690 Major Facilitator Superfamily IC778_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03465 PF03466 LysR substrate binding domain IC778_03470 PF01810 LysE type translocator IC778_03475 PF03466 LysR substrate binding domain IC778_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03485 PF01717 Cobalamin-independent synthase, Catalytic domain IC778_03485 PF08267 Cobalamin-independent synthase, N-terminal domain IC778_03490 PF01613 Flavin reductase like domain IC778_03515 PF17074 Darcynin, domain of unknown function IC778_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03535 PF03466 LysR substrate binding domain IC778_03540 PF03969 AFG1-like ATPase IC778_03555 PF00155 Aminotransferase class I and II IC778_03570 PF00268 Ribonucleotide reductase, small chain IC778_03580 PF00317 Ribonucleotide reductase, all-alpha domain IC778_03580 PF03477 ATP cone domain IC778_03580 PF02867 Ribonucleotide reductase, barrel domain IC778_03590 PF00072 Response regulator receiver domain IC778_03590 PF00486 Transcriptional regulatory protein, C terminal IC778_03595 PF00512 His Kinase A (phospho-acceptor) domain IC778_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_03595 PF00672 HAMP domain IC778_03605 PF17158 Membrane-associated sensor, integral membrane domain IC778_03605 PF00990 Diguanylate cyclase, GGDEF domain IC778_03610 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IC778_03615 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IC778_03620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IC778_03620 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IC778_03630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IC778_03630 PF10531 SLBB domain IC778_03630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IC778_03635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IC778_03635 PF00384 Molybdopterin oxidoreductase IC778_03635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IC778_03640 PF00146 NADH dehydrogenase IC778_03645 PF12838 4Fe-4S dicluster domain IC778_03650 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IC778_03655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IC778_03660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IC778_03660 PF00361 Proton-conducting membrane transporter IC778_03665 PF00361 Proton-conducting membrane transporter IC778_03670 PF00361 Proton-conducting membrane transporter IC778_03680 PF00313 'Cold-shock' DNA-binding domain IC778_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_03690 PF03466 LysR substrate binding domain IC778_03695 PF00175 Oxidoreductase NAD-binding domain IC778_03695 PF00970 Oxidoreductase FAD-binding domain IC778_03710 PF05552 Conserved TM helix IC778_03725 PF00291 Pyridoxal-phosphate dependent enzyme IC778_03730 PF13533 Biotin-lipoyl like IC778_03760 PF01588 Putative tRNA binding domain IC778_03760 PF09334 tRNA synthetases class I (M) IC778_03770 PF10609 NUBPL iron-transfer P-loop NTPase IC778_03775 PF01048 Phosphorylase superfamily IC778_03790 PF00692 dUTPase IC778_03820 PF01207 Dihydrouridine synthase (Dus) IC778_03830 PF00448 SRP54-type protein, GTPase domain IC778_03830 PF02881 SRP54-type protein, helical bundle domain IC778_03830 PF02978 Signal peptide binding domain IC778_03835 PF03309 Type III pantothenate kinase IC778_03845 PF01925 Sulfite exporter TauE/SafE IC778_03855 PF02463 RecF/RecN/SMC N terminal domain IC778_03855 PF06470 SMC proteins Flexible Hinge Domain IC778_03865 PF00533 BRCA1 C Terminus (BRCT) domain IC778_03865 PF01653 NAD-dependent DNA ligase adenylation domain IC778_03865 PF03120 NAD-dependent DNA ligase OB-fold domain IC778_03865 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IC778_03865 PF12826 Helix-hairpin-helix motif IC778_03870 PF00210 Ferritin-like domain IC778_03875 PF07690 Major Facilitator Superfamily IC778_03880 PF00982 Glycosyltransferase family 20 IC778_03885 PF02358 Trehalose-phosphatase IC778_03890 PF12697 Alpha/beta hydrolase family IC778_03890 PF08241 Methyltransferase domain IC778_03895 PF00202 Aminotransferase class-III IC778_03895 PF06968 Biotin and Thiamin Synthesis associated domain IC778_03895 PF04055 Radical SAM superfamily IC778_03900 PF00155 Aminotransferase class I and II IC778_03915 PF00849 RNA pseudouridylate synthase IC778_03915 PF01479 S4 domain IC778_03920 PF04079 Segregation and condensation complex subunit ScpB IC778_03925 PF02616 Segregation and condensation protein ScpA IC778_03930 PF01300 Telomere recombination IC778_03935 PF04315 Elongation factor P hydroxylase IC778_03940 PF02620 Large ribosomal RNA subunit accumulation protein YceD IC778_03945 PF01783 Ribosomal L32p protein family IC778_03950 PF00698 Acyl transferase domain IC778_03960 PF00550 Phosphopantetheine attachment site IC778_03965 PF04972 BON domain IC778_03965 PF01476 LysM domain IC778_03970 PF08543 Phosphomethylpyrimidine kinase IC778_03970 PF03070 TENA/THI-4/PQQC family IC778_03970 PF02581 Thiamine monophosphate synthase IC778_03980 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IC778_03995 PF02261 Aspartate decarboxylase IC778_04000 PF01195 Peptidyl-tRNA hydrolase IC778_04005 PF01386 Ribosomal L25p family IC778_04010 PF14572 Phosphoribosyl synthetase-associated domain IC778_04010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IC778_04035 PF08544 GHMP kinases C terminal IC778_04035 PF00288 GHMP kinases N terminal domain IC778_04040 PF03550 Outer membrane lipoprotein LolB IC778_04050 PF01488 Shikimate / quinate 5-dehydrogenase IC778_04050 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IC778_04050 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IC778_04055 PF10410 DnaB-helicase binding domain of primase IC778_04055 PF08278 DNA primase DnaG DnaB-binding IC778_04055 PF01807 CHC2 zinc finger IC778_04055 PF08275 DNA primase catalytic core, N-terminal domain IC778_04060 PF13525 Outer membrane lipoprotein IC778_04065 PF01479 S4 domain IC778_04065 PF00849 RNA pseudouridylate synthase IC778_04070 PF02578 Multi-copper polyphenol oxidoreductase laccase IC778_04075 PF03358 NADPH-dependent FMN reductase IC778_04080 PF01668 SmpB protein IC778_04085 PF01467 Cytidylyltransferase-like IC778_04090 PF00037 4Fe-4S binding domain IC778_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_04110 PF03466 LysR substrate binding domain IC778_04115 PF00180 Isocitrate/isopropylmalate dehydrogenase IC778_04120 PF02028 BCCT, betaine/carnitine/choline family transporter IC778_04125 PF07859 alpha/beta hydrolase fold IC778_04130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IC778_04130 PF00355 Rieske [2Fe-2S] domain IC778_04135 PF00171 Aldehyde dehydrogenase family IC778_04140 PF00175 Oxidoreductase NAD-binding domain IC778_04140 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_04140 PF00970 Oxidoreductase FAD-binding domain IC778_04155 PF02540 NAD synthase IC778_04155 PF00795 Carbon-nitrogen hydrolase IC778_04165 PF03653 Uncharacterised protein family (UPF0093) IC778_04170 PF00109 Beta-ketoacyl synthase, N-terminal domain IC778_04170 PF02801 Beta-ketoacyl synthase, C-terminal domain IC778_04180 PF00164 Ribosomal protein S12/S23 IC778_04185 PF00177 Ribosomal protein S7p/S5e IC778_04190 PF14492 Elongation Factor G, domain II IC778_04190 PF03144 Elongation factor Tu domain 2 IC778_04190 PF00009 Elongation factor Tu GTP binding domain IC778_04190 PF00679 Elongation factor G C-terminus IC778_04190 PF03764 Elongation factor G, domain IV IC778_04195 PF03143 Elongation factor Tu C-terminal domain IC778_04195 PF00009 Elongation factor Tu GTP binding domain IC778_04195 PF03144 Elongation factor Tu domain 2 IC778_04210 PF00583 Acetyltransferase (GNAT) family IC778_04215 PF04376 Arginine-tRNA-protein transferase, N terminus IC778_04215 PF04377 Arginine-tRNA-protein transferase, C terminus IC778_04220 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IC778_04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_04230 PF09397 Ftsk gamma domain IC778_04230 PF01580 FtsK/SpoIIIE family IC778_04230 PF17854 FtsK alpha domain IC778_04230 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IC778_04235 PF01810 LysE type translocator IC778_04245 PF03776 Septum formation topological specificity factor MinE IC778_04250 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IC778_04255 PF03775 Septum formation inhibitor MinC, C-terminal domain IC778_04265 PF01553 Acyltransferase IC778_04270 PF00691 OmpA family IC778_04270 PF13488 Glycine zipper IC778_04275 PF13361 UvrD-like helicase C-terminal domain IC778_04275 PF00580 UvrD/REP helicase N-terminal domain IC778_04280 PF00692 dUTPase IC778_04285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IC778_04285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IC778_04285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IC778_04285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IC778_04290 PF00696 Amino acid kinase family IC778_04300 PF13230 Glutamine amidotransferases class-II IC778_04305 PF01814 Hemerythrin HHE cation binding domain IC778_04315 PF03658 RnfH family Ubiquitin IC778_04320 PF04355 SmpA / OmlA family IC778_04325 PF01475 Ferric uptake regulator family IC778_04330 PF00437 Type II/IV secretion system protein IC778_04335 PF00437 Type II/IV secretion system protein IC778_04340 PF01168 Alanine racemase, N-terminal domain IC778_04345 PF02673 Bacitracin resistance protein BacA IC778_04355 PF00149 Calcineurin-like phosphoesterase IC778_04355 PF12320 Type 5 capsule protein repressor C-terminal domain IC778_04375 PF08338 Domain of unknown function (DUF1731) IC778_04375 PF01370 NAD dependent epimerase/dehydratase family IC778_04380 PF01266 FAD dependent oxidoreductase IC778_04385 PF00490 Delta-aminolevulinic acid dehydratase IC778_04390 PF03061 Thioesterase superfamily IC778_04395 PF13533 Biotin-lipoyl like IC778_04400 PF07690 Major Facilitator Superfamily IC778_04495 PF13936 Helix-turn-helix domain IC778_04495 PF00665 Integrase core domain IC778_04515 PF00083 Sugar (and other) transporter IC778_04520 PF00701 Dihydrodipicolinate synthetase family IC778_04540 PF13520 Amino acid permease IC778_04545 PF02574 Homocysteine S-methyltransferase IC778_04555 PF06039 Malate:quinone oxidoreductase (Mqo) IC778_04560 PF00732 GMC oxidoreductase IC778_04560 PF05199 GMC oxidoreductase IC778_04565 PF00171 Aldehyde dehydrogenase family IC778_04570 PF00440 Bacterial regulatory proteins, tetR family IC778_04570 PF13977 BetI-type transcriptional repressor, C-terminal IC778_04575 PF02028 BCCT, betaine/carnitine/choline family transporter IC778_04580 PF02028 BCCT, betaine/carnitine/choline family transporter IC778_04590 PF03061 Thioesterase superfamily IC778_04600 PF07683 Cobalamin synthesis protein cobW C-terminal domain IC778_04600 PF02492 CobW/HypB/UreG, nucleotide-binding domain IC778_04605 PF00375 Sodium:dicarboxylate symporter family IC778_04610 PF07152 YaeQ protein IC778_04615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_04620 PF14883 Hypothetical glycosyl hydrolase family 13 IC778_04620 PF01522 Polysaccharide deacetylase IC778_04625 PF00535 Glycosyl transferase family 2 IC778_04635 PF00378 Enoyl-CoA hydratase/isomerase IC778_04665 PF01614 Bacterial transcriptional regulator IC778_04665 PF09339 IclR helix-turn-helix domain IC778_04670 PF00355 Rieske [2Fe-2S] domain IC778_04680 PF00355 Rieske [2Fe-2S] domain IC778_04690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IC778_04695 PF14759 Reductase C-terminal IC778_04695 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_04700 PF07690 Major Facilitator Superfamily IC778_04710 PF12697 Alpha/beta hydrolase family IC778_04720 PF01958 Domain of unknown function DUF108 IC778_04720 PF03447 Homoserine dehydrogenase, NAD binding domain IC778_04725 PF00171 Aldehyde dehydrogenase family IC778_04730 PF00205 Thiamine pyrophosphate enzyme, central domain IC778_04730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IC778_04730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IC778_04745 PF01327 Polypeptide deformylase IC778_04750 PF04960 Glutaminase IC778_04755 PF12833 Helix-turn-helix domain IC778_04755 PF02311 AraC-like ligand binding domain IC778_04760 PF07690 Major Facilitator Superfamily IC778_04765 PF01263 Aldose 1-epimerase IC778_04785 PF02310 B12 binding domain IC778_04785 PF02607 B12 binding domain IC778_04785 PF02965 Vitamin B12 dependent methionine synthase, activation domain IC778_04785 PF00809 Pterin binding enzyme IC778_04785 PF02574 Homocysteine S-methyltransferase IC778_04795 PF01384 Phosphate transporter family IC778_04800 PF00291 Pyridoxal-phosphate dependent enzyme IC778_04815 PF03781 Sulfatase-modifying factor enzyme 1 IC778_04820 PF00884 Sulfatase IC778_04830 PF01521 Iron-sulphur cluster biosynthesis IC778_04830 PF01106 NifU-like domain IC778_04835 PF07715 TonB-dependent Receptor Plug Domain IC778_04835 PF00593 TonB dependent receptor IC778_04845 PF00561 alpha/beta hydrolase fold IC778_04850 PF00484 Carbonic anhydrase IC778_04855 PF13472 GDSL-like Lipase/Acylhydrolase family IC778_04860 PF00005 ABC transporter IC778_04870 PF01694 Rhomboid family IC778_04875 PF00912 Transglycosylase IC778_04880 PF13089 Polyphosphate kinase N-terminal domain IC778_04880 PF13090 Polyphosphate kinase C-terminal domain 2 IC778_04880 PF02503 Polyphosphate kinase middle domain IC778_04880 PF17941 Polyphosphate kinase C-terminal domain 1 IC778_04890 PF03466 LysR substrate binding domain IC778_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_04895 PF00561 alpha/beta hydrolase fold IC778_04900 PF18113 Rubredoxin binding C-terminal domain IC778_04900 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_04905 PF00301 Rubredoxin IC778_04920 PF00152 tRNA synthetases class II (D, K and N) IC778_04920 PF01336 OB-fold nucleic acid binding domain IC778_04925 PF14052 Capsule assembly protein Wzi IC778_04935 PF01507 Phosphoadenosine phosphosulfate reductase family IC778_04940 PF00009 Elongation factor Tu GTP binding domain IC778_04955 PF03600 Citrate transporter IC778_04960 PF00571 CBS domain IC778_04960 PF03471 Transporter associated domain IC778_04960 PF01595 Cyclin M transmembrane N-terminal domain IC778_04965 PF03466 LysR substrate binding domain IC778_04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_04970 PF00463 Isocitrate lyase family IC778_04985 PF01774 UreD urease accessory protein IC778_04990 PF00547 Urease, gamma subunit IC778_04995 PF00699 Urease beta subunit IC778_05000 PF01979 Amidohydrolase family IC778_05000 PF00449 Urease alpha-subunit, N-terminal domain IC778_05005 PF05194 UreE urease accessory protein, C-terminal domain IC778_05005 PF02814 UreE urease accessory protein, N-terminal domain IC778_05010 PF01730 UreF IC778_05015 PF02492 CobW/HypB/UreG, nucleotide-binding domain IC778_05035 PF03717 Penicillin-binding Protein dimerisation domain IC778_05035 PF00905 Penicillin binding protein transpeptidase domain IC778_05050 PF05191 Adenylate kinase, active site lid IC778_05060 PF00730 HhH-GPD superfamily base excision DNA repair protein IC778_05060 PF00633 Helix-hairpin-helix motif IC778_05060 PF10576 Iron-sulfur binding domain of endonuclease III IC778_05065 PF04060 Putative Fe-S cluster IC778_05070 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IC778_05070 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IC778_05080 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IC778_05085 PF02590 Predicted SPOUT methyltransferase IC778_05090 PF05362 Lon protease (S16) C-terminal proteolytic domain IC778_05090 PF00004 ATPase family associated with various cellular activities (AAA) IC778_05090 PF02190 ATP-dependent protease La (LON) substrate-binding domain IC778_05100 PF00691 OmpA family IC778_05100 PF04355 SmpA / OmlA family IC778_05105 PF13018 Extended Signal Peptide of Type V secretion system IC778_05105 PF03895 YadA-like membrane anchor domain IC778_05105 PF05658 Head domain of trimeric autotransporter adhesin IC778_05105 PF05662 Coiled stalk of trimeric autotransporter adhesin IC778_05110 PF04355 SmpA / OmlA family IC778_05110 PF00691 OmpA family IC778_05115 PF01812 5-formyltetrahydrofolate cyclo-ligase family IC778_05145 PF17854 FtsK alpha domain IC778_05145 PF09397 Ftsk gamma domain IC778_05145 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IC778_05145 PF01580 FtsK/SpoIIIE family IC778_05420 PF13438 Domain of unknown function (DUF4113) IC778_05420 PF00817 impB/mucB/samB family IC778_05420 PF11799 impB/mucB/samB family C-terminal domain IC778_05425 PF00717 Peptidase S24-like IC778_05475 PF05195 Aminopeptidase P, N-terminal domain IC778_05475 PF00557 Metallopeptidase family M24 IC778_05480 PF01494 FAD binding domain IC778_05485 PF01494 FAD binding domain IC778_05495 PF13411 MerR HTH family regulatory protein IC778_05505 PF01810 LysE type translocator IC778_05510 PF03466 LysR substrate binding domain IC778_05510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_05520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IC778_05525 PF02021 Uncharacterised protein family UPF0102 IC778_05530 PF04972 BON domain IC778_05540 PF09297 NADH pyrophosphatase zinc ribbon domain IC778_05540 PF00293 NUDIX domain IC778_05550 PF00929 Exonuclease IC778_05555 PF01476 LysM domain IC778_05555 PF01464 Transglycosylase SLT domain IC778_05560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IC778_05565 PF00528 Binding-protein-dependent transport system inner membrane component IC778_05570 PF12911 N-terminal TM domain of oligopeptide transport permease C IC778_05570 PF00528 Binding-protein-dependent transport system inner membrane component IC778_05575 PF00005 ABC transporter IC778_05575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IC778_05580 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_05580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_05600 PF00929 Exonuclease IC778_05605 PF01979 Amidohydrolase family IC778_05610 PF00563 EAL domain IC778_05610 PF00990 Diguanylate cyclase, GGDEF domain IC778_05610 PF00360 Phytochrome region IC778_05610 PF01590 GAF domain IC778_05615 PF00764 Arginosuccinate synthase IC778_05620 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_05620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_05635 PF01042 Endoribonuclease L-PSP IC778_05640 PF01266 FAD dependent oxidoreductase IC778_05645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_05645 PF03466 LysR substrate binding domain IC778_05655 PF01494 FAD binding domain IC778_05665 PF05987 Bacterial protein of unknown function (DUF898) IC778_05670 PF03180 NLPA lipoprotein IC778_05680 PF01925 Sulfite exporter TauE/SafE IC778_05715 PF01047 MarR family IC778_05720 PF00561 alpha/beta hydrolase fold IC778_05725 PF13296 Putative type VI secretion system Rhs element Vgr IC778_05725 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IC778_05725 PF04717 Type VI secretion system, phage-baseplate injector IC778_05745 PF03783 Curli production assembly/transport component CsgG IC778_05755 PF05643 Putative bacterial lipoprotein (DUF799) IC778_05765 PF00324 Amino acid permease IC778_05770 PF01266 FAD dependent oxidoreductase IC778_05775 PF00324 Amino acid permease IC778_05785 PF00392 Bacterial regulatory proteins, gntR family IC778_05785 PF07729 FCD domain IC778_05795 PF00171 Aldehyde dehydrogenase family IC778_05805 PF00202 Aminotransferase class-III IC778_05810 PF04958 Arginine N-succinyltransferase beta subunit IC778_05815 PF00324 Amino acid permease IC778_05820 PF00171 Aldehyde dehydrogenase family IC778_05825 PF12833 Helix-turn-helix domain IC778_05825 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IC778_05835 PF00892 EamA-like transporter family IC778_05840 PF07519 Tannase and feruloyl esterase IC778_05850 PF03573 outer membrane porin, OprD family IC778_05855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_05855 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_05855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_05865 PF00171 Aldehyde dehydrogenase family IC778_05870 PF00378 Enoyl-CoA hydratase/isomerase IC778_05875 PF07690 Major Facilitator Superfamily IC778_05890 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_05890 PF00175 Oxidoreductase NAD-binding domain IC778_05895 PF00355 Rieske [2Fe-2S] domain IC778_05905 PF03573 outer membrane porin, OprD family IC778_05910 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding IC778_05910 PF18381 YcaO cyclodehydratase C-terminal domain IC778_05915 PF05199 GMC oxidoreductase IC778_05920 PF07859 alpha/beta hydrolase fold IC778_05925 PF00106 short chain dehydrogenase IC778_05930 PF00743 Flavin-binding monooxygenase-like IC778_05935 PF12833 Helix-turn-helix domain IC778_05935 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IC778_05940 PF05683 Fumarase C-terminus IC778_05945 PF05681 Fumarate hydratase (Fumerase) IC778_05950 PF07690 Major Facilitator Superfamily IC778_05955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_05955 PF03466 LysR substrate binding domain IC778_05960 PF04072 Leucine carboxyl methyltransferase IC778_05965 PF00743 Flavin-binding monooxygenase-like IC778_05970 PF00106 short chain dehydrogenase IC778_05980 PF00440 Bacterial regulatory proteins, tetR family IC778_05980 PF17932 Tetracyclin repressor-like, C-terminal domain IC778_05985 PF17954 Quercetinase C-terminal cupin domain IC778_05985 PF02678 Pirin IC778_05995 PF00106 short chain dehydrogenase IC778_06000 PF00743 Flavin-binding monooxygenase-like IC778_06010 PF00860 Permease family IC778_06015 PF00962 Adenosine/AMP deaminase IC778_06020 PF01292 Prokaryotic cytochrome b561 IC778_06030 PF01351 Ribonuclease HII IC778_06035 PF02599 Global regulator protein family IC778_06040 PF13840 ACT domain IC778_06040 PF00696 Amino acid kinase family IC778_06040 PF01842 ACT domain IC778_06045 PF02272 DHHA1 domain IC778_06045 PF01411 tRNA synthetases class II (A) IC778_06045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IC778_06050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IC778_06050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IC778_06060 PF13393 Histidyl-tRNA synthetase IC778_06065 PF00709 Adenylosuccinate synthetase IC778_06080 PF00248 Aldo/keto reductase family IC778_06085 PF13545 Crp-like helix-turn-helix domain IC778_06085 PF00027 Cyclic nucleotide-binding domain IC778_06090 PF02566 OsmC-like protein IC778_06105 PF17871 AAA lid domain IC778_06105 PF10431 C-terminal, D2-small domain, of ClpB protein IC778_06105 PF07724 AAA domain (Cdc48 subfamily) IC778_06105 PF00004 ATPase family associated with various cellular activities (AAA) IC778_06105 PF02861 Clp amino terminal domain, pathogenicity island component IC778_06120 PF02926 THUMP domain IC778_06120 PF10672 S-adenosylmethionine-dependent methyltransferase IC778_06120 PF01170 Putative RNA methylase family UPF0020 IC778_06130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IC778_06130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IC778_06135 PF01979 Amidohydrolase family IC778_06140 PF00691 OmpA family IC778_06150 PF13417 Glutathione S-transferase, N-terminal domain IC778_06150 PF00043 Glutathione S-transferase, C-terminal domain IC778_06155 PF02390 Putative methyltransferase IC778_06165 PF00043 Glutathione S-transferase, C-terminal domain IC778_06165 PF02798 Glutathione S-transferase, N-terminal domain IC778_06175 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_06175 PF13192 Thioredoxin domain IC778_06195 PF00487 Fatty acid desaturase IC778_06205 PF10417 C-terminal domain of 1-Cys peroxiredoxin IC778_06205 PF00578 AhpC/TSA family IC778_06210 PF11898 Domain of unknown function (DUF3418) IC778_06210 PF04408 Helicase associated domain (HA2) IC778_06210 PF00271 Helicase conserved C-terminal domain IC778_06210 PF00270 DEAD/DEAH box helicase IC778_06210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IC778_06215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IC778_06215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IC778_06230 PF07690 Major Facilitator Superfamily IC778_06235 PF03594 Benzoate membrane transport protein IC778_06240 PF00106 short chain dehydrogenase IC778_06245 PF00970 Oxidoreductase FAD-binding domain IC778_06245 PF00175 Oxidoreductase NAD-binding domain IC778_06245 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_06250 PF00866 Ring hydroxylating beta subunit IC778_06255 PF00355 Rieske [2Fe-2S] domain IC778_06255 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IC778_06265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_06265 PF03466 LysR substrate binding domain IC778_06275 PF00175 Oxidoreductase NAD-binding domain IC778_06275 PF00970 Oxidoreductase FAD-binding domain IC778_06275 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_06285 PF04945 YHS domain IC778_06285 PF02332 Methane/Phenol/Toluene Hydroxylase IC778_06290 PF02406 MmoB/DmpM family IC778_06295 PF02332 Methane/Phenol/Toluene Hydroxylase IC778_06300 PF06099 Phenol hydroxylase subunit IC778_06310 PF00158 Sigma-54 interaction domain IC778_06310 PF02830 V4R domain IC778_06310 PF02954 Bacterial regulatory protein, Fis family IC778_06310 PF06505 Activator of aromatic catabolism IC778_06320 PF00403 Heavy-metal-associated domain IC778_06325 PF09278 MerR, DNA binding IC778_06325 PF00376 MerR family regulatory protein IC778_06360 PF13742 OB-fold nucleic acid binding domain IC778_06360 PF02601 Exonuclease VII, large subunit IC778_06395 PF01810 LysE type translocator IC778_06400 PF00313 'Cold-shock' DNA-binding domain IC778_06410 PF03807 NADP oxidoreductase coenzyme F420-dependent IC778_06410 PF14748 Pyrroline-5-carboxylate reductase dimerisation IC778_06430 PF07690 Major Facilitator Superfamily IC778_06435 PF01638 HxlR-like helix-turn-helix IC778_06440 PF00248 Aldo/keto reductase family IC778_06455 PF01406 tRNA synthetases class I (C) catalytic domain IC778_06455 PF09190 DALR domain IC778_06460 PF01380 SIS domain IC778_06460 PF00571 CBS domain IC778_06475 PF03968 OstA-like protein IC778_06480 PF12399 Branched-chain amino acid ATP-binding cassette transporter IC778_06480 PF00005 ABC transporter IC778_06485 PF02321 Outer membrane efflux protein IC778_06490 PF00664 ABC transporter transmembrane region IC778_06490 PF00005 ABC transporter IC778_06490 PF03412 Peptidase C39 family IC778_06495 PF13533 Biotin-lipoyl like IC778_06495 PF13533 Biotin-lipoyl like IC778_06500 PF01205 Uncharacterized protein family UPF0029 IC778_06505 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_06515 PF01596 O-methyltransferase IC778_06525 PF11953 Domain of unknown function (DUF3470) IC778_06525 PF00037 4Fe-4S binding domain IC778_06535 PF01624 MutS domain I IC778_06535 PF00488 MutS domain V IC778_06535 PF05192 MutS domain III IC778_06535 PF05190 MutS family domain IV IC778_06535 PF05188 MutS domain II IC778_06540 PF03466 LysR substrate binding domain IC778_06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_06580 PF03279 Bacterial lipid A biosynthesis acyltransferase IC778_06590 PF01979 Amidohydrolase family IC778_06600 PF02649 Type I GTP cyclohydrolase folE2 IC778_06610 PF02322 Cytochrome bd terminal oxidase subunit II IC778_06615 PF01654 Cytochrome bd terminal oxidase subunit I IC778_06625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_06625 PF03466 LysR substrate binding domain IC778_06630 PF01979 Amidohydrolase family IC778_06645 PF07690 Major Facilitator Superfamily IC778_06665 PF07715 TonB-dependent Receptor Plug Domain IC778_06670 PF13302 Acetyltransferase (GNAT) domain IC778_06685 PF06865 Pyrimidine/purine nucleoside phosphorylase IC778_06690 PF13404 AsnC-type helix-turn-helix domain IC778_06690 PF01037 Lrp/AsnC ligand binding domain IC778_06695 PF01053 Cys/Met metabolism PLP-dependent enzyme IC778_06700 PF00117 Glutamine amidotransferase class-I IC778_06705 PF00313 'Cold-shock' DNA-binding domain IC778_06710 PF00440 Bacterial regulatory proteins, tetR family IC778_06710 PF16295 Tetracyclin repressor-like, C-terminal domain IC778_06790 PF05593 RHS Repeat IC778_06790 PF03527 RHS protein IC778_06805 PF00665 Integrase core domain IC778_06805 PF13936 Helix-turn-helix domain IC778_06845 PF00202 Aminotransferase class-III IC778_06850 PF06629 MltA-interacting protein MipA IC778_06865 PF00892 EamA-like transporter family IC778_06895 PF05114 Protein of unknown function (DUF692) IC778_06905 PF08281 Sigma-70, region 4 IC778_06905 PF04542 Sigma-70 region 2 IC778_06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_06915 PF03466 LysR substrate binding domain IC778_06920 PF01566 Natural resistance-associated macrophage protein IC778_06925 PF03746 LamB/YcsF family IC778_06930 PF07286 Protein of unknown function (DUF1445) IC778_06940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_06940 PF00364 Biotin-requiring enzyme IC778_06940 PF00289 Biotin carboxylase, N-terminal domain IC778_06940 PF02785 Biotin carboxylase C-terminal domain IC778_06945 PF00654 Voltage gated chloride channel IC778_06995 PF08240 Alcohol dehydrogenase GroES-like domain IC778_06995 PF00107 Zinc-binding dehydrogenase IC778_06995 PF13823 Alcohol dehydrogenase GroES-associated IC778_07010 PF02785 Biotin carboxylase C-terminal domain IC778_07010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_07010 PF00289 Biotin carboxylase, N-terminal domain IC778_07015 PF02525 Flavodoxin-like fold IC778_07020 PF01638 HxlR-like helix-turn-helix IC778_07035 PF08753 NikR C terminal nickel binding domain IC778_07035 PF01402 Ribbon-helix-helix protein, copG family IC778_07040 PF01425 Amidase IC778_07045 PF00497 Bacterial extracellular solute-binding proteins, family 3 IC778_07050 PF00005 ABC transporter IC778_07075 PF07690 Major Facilitator Superfamily IC778_07080 PF03466 LysR substrate binding domain IC778_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07095 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IC778_07110 PF05947 Type VI secretion system, TssF IC778_07125 PF06744 Type VI secretion protein IcmF C-terminal IC778_07125 PF14331 ImcF-related N-terminal domain IC778_07125 PF06761 Intracellular multiplication and human macrophage-killing IC778_07135 PF00691 OmpA family IC778_07135 PF01389 OmpA-like transmembrane domain IC778_07145 PF10431 C-terminal, D2-small domain, of ClpB protein IC778_07145 PF07724 AAA domain (Cdc48 subfamily) IC778_07145 PF00004 ATPase family associated with various cellular activities (AAA) IC778_07145 PF17871 AAA lid domain IC778_07150 PF06812 ImpA, N-terminal, type VI secretion system IC778_07155 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IC778_07175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07175 PF03466 LysR substrate binding domain IC778_07180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IC778_07185 PF07690 Major Facilitator Superfamily IC778_07200 PF00155 Aminotransferase class I and II IC778_07200 PF00392 Bacterial regulatory proteins, gntR family IC778_07205 PF02677 Epoxyqueuosine reductase QueH IC778_07215 PF00376 MerR family regulatory protein IC778_07215 PF09278 MerR, DNA binding IC778_07225 PF03315 Serine dehydratase beta chain IC778_07225 PF03313 Serine dehydratase alpha chain IC778_07230 PF01575 MaoC like domain IC778_07230 PF00171 Aldehyde dehydrogenase family IC778_07235 PF05138 Phenylacetic acid catabolic protein IC778_07240 PF06243 Phenylacetic acid degradation B IC778_07245 PF05138 Phenylacetic acid catabolic protein IC778_07250 PF01883 Iron-sulfur cluster assembly protein IC778_07255 PF00175 Oxidoreductase NAD-binding domain IC778_07255 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_07255 PF00970 Oxidoreductase FAD-binding domain IC778_07260 PF00378 Enoyl-CoA hydratase/isomerase IC778_07265 PF00378 Enoyl-CoA hydratase/isomerase IC778_07270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_07270 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IC778_07270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_07280 PF00501 AMP-binding enzyme IC778_07280 PF14535 AMP-binding enzyme C-terminal domain IC778_07285 PF07848 PaaX-like protein IC778_07285 PF08223 PaaX-like protein C-terminal domain IC778_07290 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_07295 PF03061 Thioesterase superfamily IC778_07305 PF00300 Histidine phosphatase superfamily (branch 1) IC778_07325 PF00182 Chitinase class I IC778_07375 PF00440 Bacterial regulatory proteins, tetR family IC778_07375 PF16295 Tetracyclin repressor-like, C-terminal domain IC778_07380 PF00202 Aminotransferase class-III IC778_07395 PF01636 Phosphotransferase enzyme family IC778_07400 PF13520 Amino acid permease IC778_07405 PF00199 Catalase IC778_07410 PF01292 Prokaryotic cytochrome b561 IC778_07430 PF03466 LysR substrate binding domain IC778_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07435 PF02525 Flavodoxin-like fold IC778_07440 PF09339 IclR helix-turn-helix domain IC778_07440 PF01614 Bacterial transcriptional regulator IC778_07445 PF01494 FAD binding domain IC778_07450 PF00842 Alanine racemase, C-terminal domain IC778_07450 PF01168 Alanine racemase, N-terminal domain IC778_07455 PF00392 Bacterial regulatory proteins, gntR family IC778_07455 PF07702 UTRA domain IC778_07465 PF00005 ABC transporter IC778_07465 PF08402 TOBE domain IC778_07470 PF00528 Binding-protein-dependent transport system inner membrane component IC778_07475 PF01266 FAD dependent oxidoreductase IC778_07480 PF00266 Aminotransferase class-V IC778_07485 PF13419 Haloacid dehalogenase-like hydrolase IC778_07490 PF07690 Major Facilitator Superfamily IC778_07495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_07495 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_07495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_07500 PF02515 CoA-transferase family III IC778_07505 PF09339 IclR helix-turn-helix domain IC778_07510 PF00378 Enoyl-CoA hydratase/isomerase IC778_07515 PF03060 Nitronate monooxygenase IC778_07530 PF09339 IclR helix-turn-helix domain IC778_07535 PF02803 Thiolase, C-terminal domain IC778_07535 PF00108 Thiolase, N-terminal domain IC778_07540 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IC778_07540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_07540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_07550 PF00378 Enoyl-CoA hydratase/isomerase IC778_07555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_07555 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_07555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_07580 PF01144 Coenzyme A transferase IC778_07590 PF07690 Major Facilitator Superfamily IC778_07600 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_07600 PF12806 Acetyl-CoA dehydrogenase C-terminal like IC778_07600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_07600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_07615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07615 PF03466 LysR substrate binding domain IC778_07620 PF00682 HMGL-like IC778_07625 PF18140 Propionyl-coenzyme A carboxylase BT domain IC778_07625 PF00289 Biotin carboxylase, N-terminal domain IC778_07625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_07625 PF02785 Biotin carboxylase C-terminal domain IC778_07625 PF00364 Biotin-requiring enzyme IC778_07630 PF00378 Enoyl-CoA hydratase/isomerase IC778_07635 PF01039 Carboxyl transferase domain IC778_07640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_07640 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_07640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_07645 PF00440 Bacterial regulatory proteins, tetR family IC778_07650 PF13193 AMP-binding enzyme C-terminal domain IC778_07650 PF00501 AMP-binding enzyme IC778_07670 PF03466 LysR substrate binding domain IC778_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07700 PF18146 Damage-inducible protein CinA KH domain IC778_07700 PF02464 Competence-damaged protein IC778_07700 PF00994 Probable molybdopterin binding domain IC778_07710 PF06628 Catalase-related immune-responsive IC778_07710 PF18011 C-terminal domain found in long catalases IC778_07710 PF00199 Catalase IC778_07735 PF00717 Peptidase S24-like IC778_07745 PF01037 Lrp/AsnC ligand binding domain IC778_07745 PF13404 AsnC-type helix-turn-helix domain IC778_07760 PF00072 Response regulator receiver domain IC778_07765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IC778_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07775 PF03466 LysR substrate binding domain IC778_07780 PF07690 Major Facilitator Superfamily IC778_07795 PF00528 Binding-protein-dependent transport system inner membrane component IC778_07800 PF00528 Binding-protein-dependent transport system inner membrane component IC778_07805 PF00005 ABC transporter IC778_07810 PF00497 Bacterial extracellular solute-binding proteins, family 3 IC778_07815 PF00497 Bacterial extracellular solute-binding proteins, family 3 IC778_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07820 PF03466 LysR substrate binding domain IC778_07825 PF01810 LysE type translocator IC778_07830 PF00266 Aminotransferase class-V IC778_07840 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_07845 PF00581 Rhodanese-like domain IC778_07855 PF03466 LysR substrate binding domain IC778_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07860 PF02798 Glutathione S-transferase, N-terminal domain IC778_07865 PF02798 Glutathione S-transferase, N-terminal domain IC778_07865 PF14834 Glutathione S-transferase, C-terminal domain IC778_07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07870 PF03466 LysR substrate binding domain IC778_07875 PF03788 LrgA family IC778_07880 PF04172 LrgB-like family IC778_07885 PF00155 Aminotransferase class I and II IC778_07885 PF00392 Bacterial regulatory proteins, gntR family IC778_07900 PF16957 Malonate decarboxylase, alpha subunit, transporter IC778_07905 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IC778_07910 PF06857 Malonate decarboxylase delta subunit (MdcD) IC778_07915 PF01039 Carboxyl transferase domain IC778_07925 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IC778_07930 PF00698 Acyl transferase domain IC778_07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_07945 PF03466 LysR substrate binding domain IC778_07950 PF00392 Bacterial regulatory proteins, gntR family IC778_07950 PF00155 Aminotransferase class I and II IC778_07960 PF02322 Cytochrome bd terminal oxidase subunit II IC778_07965 PF01654 Cytochrome bd terminal oxidase subunit I IC778_07975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_07975 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_07975 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_07980 PF00296 Luciferase-like monooxygenase IC778_07985 PF00083 Sugar (and other) transporter IC778_07995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IC778_08000 PF00005 ABC transporter IC778_08005 PF00528 Binding-protein-dependent transport system inner membrane component IC778_08010 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IC778_08015 PF01177 Asp/Glu/Hydantoin racemase IC778_08020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IC778_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_08030 PF03466 LysR substrate binding domain IC778_08040 PF13382 Adenine deaminase C-terminal domain IC778_08040 PF01979 Amidohydrolase family IC778_08050 PF03960 ArsC family IC778_08055 PF01022 Bacterial regulatory protein, arsR family IC778_08060 PF01758 Sodium Bile acid symporter family IC778_08065 PF03358 NADPH-dependent FMN reductase IC778_08070 PF03466 LysR substrate binding domain IC778_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_08085 PF13192 Thioredoxin domain IC778_08085 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_08100 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_08105 PF00588 SpoU rRNA Methylase family IC778_08110 PF14579 Helix-hairpin-helix motif IC778_08110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IC778_08110 PF02811 PHP domain IC778_08110 PF01336 OB-fold nucleic acid binding domain IC778_08110 PF07733 Bacterial DNA polymerase III alpha NTPase domain IC778_08115 PF17763 Glutaminase/Asparaginase C-terminal domain IC778_08115 PF00710 Asparaginase, N-terminal IC778_08120 PF00375 Sodium:dicarboxylate symporter family IC778_08125 PF00155 Aminotransferase class I and II IC778_08130 PF01641 SelR domain IC778_08135 PF00255 Glutathione peroxidase IC778_08140 PF02311 AraC-like ligand binding domain IC778_08140 PF12833 Helix-turn-helix domain IC778_08150 PF00155 Aminotransferase class I and II IC778_08155 PF08335 GlnD PII-uridylyltransferase IC778_08155 PF01966 HD domain IC778_08155 PF01909 Nucleotidyltransferase domain IC778_08160 PF02222 ATP-grasp domain IC778_08170 PF05437 Branched-chain amino acid transport protein (AzlD) IC778_08175 PF03591 AzlC protein IC778_08200 PF01926 50S ribosome-binding GTPase IC778_08200 PF06071 Protein of unknown function (DUF933) IC778_08205 PF00528 Binding-protein-dependent transport system inner membrane component IC778_08210 PF09383 NIL domain IC778_08210 PF00005 ABC transporter IC778_08215 PF03180 NLPA lipoprotein IC778_08220 PF03180 NLPA lipoprotein IC778_08225 PF00296 Luciferase-like monooxygenase IC778_08235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_08235 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_08250 PF00528 Binding-protein-dependent transport system inner membrane component IC778_08255 PF00528 Binding-protein-dependent transport system inner membrane component IC778_08260 PF00005 ABC transporter IC778_08270 PF01037 Lrp/AsnC ligand binding domain IC778_08275 PF01709 Transcriptional regulator IC778_08285 PF00440 Bacterial regulatory proteins, tetR family IC778_08295 PF03472 Autoinducer binding domain IC778_08295 PF00196 Bacterial regulatory proteins, luxR family IC778_08315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_08315 PF03466 LysR substrate binding domain IC778_08325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IC778_08335 PF00892 EamA-like transporter family IC778_08350 PF13954 PapC N-terminal domain IC778_08350 PF00577 Outer membrane usher protein IC778_08350 PF13953 PapC C-terminal domain IC778_08355 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IC778_08355 PF02753 Pili assembly chaperone PapD, C-terminal domain IC778_08360 PF16970 Type-1 fimbrial protein, A IC778_08375 PF06968 Biotin and Thiamin Synthesis associated domain IC778_08375 PF04055 Radical SAM superfamily IC778_08380 PF08331 Domain of unknown function (DUF1730) IC778_08385 PF03853 YjeF-related protein N-terminus IC778_08385 PF01256 Carbohydrate kinase IC778_08390 PF02075 Crossover junction endodeoxyribonuclease RuvC IC778_08420 PF02772 S-adenosylmethionine synthetase, central domain IC778_08420 PF00438 S-adenosylmethionine synthetase, N-terminal domain IC778_08420 PF02773 S-adenosylmethionine synthetase, C-terminal domain IC778_08425 PF00456 Transketolase, thiamine diphosphate binding domain IC778_08425 PF02780 Transketolase, C-terminal domain IC778_08425 PF02779 Transketolase, pyrimidine binding domain IC778_08440 PF04264 YceI-like domain IC778_08450 PF09992 Phosphodiester glycosidase IC778_08460 PF05958 tRNA (Uracil-5-)-methyltransferase IC778_08465 PF04229 GrpB protein IC778_08470 PF14850 DNA-binding domain of Proline dehydrogenase IC778_08470 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IC778_08470 PF00171 Aldehyde dehydrogenase family IC778_08470 PF01619 Proline dehydrogenase IC778_08475 PF01037 Lrp/AsnC ligand binding domain IC778_08480 PF00474 Sodium:solute symporter family IC778_08485 PF02146 Sir2 family IC778_08490 PF01597 Glycine cleavage H-protein IC778_08495 PF12833 Helix-turn-helix domain IC778_08495 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IC778_08505 PF00664 ABC transporter transmembrane region IC778_08505 PF00005 ABC transporter IC778_08510 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IC778_08515 PF06912 Protein of unknown function (DUF1275) IC778_08520 PF00375 Sodium:dicarboxylate symporter family IC778_08535 PF08007 Cupin superfamily protein IC778_08540 PF02545 Maf-like protein IC778_08550 PF00162 Phosphoglycerate kinase IC778_08560 PF01116 Fructose-bisphosphate aldolase class-II IC778_08570 PF04453 LPS transport system D IC778_08570 PF03968 OstA-like protein IC778_08575 PF01636 Phosphotransferase enzyme family IC778_08580 PF00483 Nucleotidyl transferase IC778_08585 PF02527 rRNA small subunit methyltransferase G IC778_08590 PF13614 AAA domain IC778_08595 PF17762 HTH domain found in ParB protein IC778_08595 PF02195 ParB-like nuclease domain IC778_08600 PF01618 MotA/TolQ/ExbB proton channel family IC778_08610 PF00664 ABC transporter transmembrane region IC778_08610 PF00005 ABC transporter IC778_08620 PF02348 Cytidylyltransferase IC778_08625 PF09115 DNA polymerase III, delta subunit, C terminal IC778_08635 PF01026 TatD related DNase IC778_08650 PF02501 Type II secretion system (T2SS), protein I IC778_08650 PF07963 Prokaryotic N-terminal methylation motif IC778_08655 PF07963 Prokaryotic N-terminal methylation motif IC778_08655 PF11612 Type II secretion system (T2SS), protein J IC778_08660 PF03934 Type II secretion system (T2SS), protein K IC778_08670 PF03167 Uracil DNA glycosylase superfamily IC778_08680 PF14437 MafB19-like deaminase IC778_08690 PF02224 Cytidylate kinase IC778_08695 PF00575 S1 RNA binding domain IC778_08700 PF00216 Bacterial DNA-binding protein IC778_08710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IC778_08715 PF03956 Lysine exporter LysO IC778_08720 PF00743 Flavin-binding monooxygenase-like IC778_08730 PF03969 AFG1-like ATPase IC778_08735 PF00589 Phage integrase family IC778_08735 PF02899 Phage integrase, N-terminal SAM-like domain IC778_08780 PF01726 LexA DNA binding domain IC778_08780 PF00717 Peptidase S24-like IC778_08800 PF03796 DnaB-like helicase C terminal domain IC778_08800 PF00772 DnaB-like helicase N terminal domain IC778_08880 PF04860 Phage portal protein IC778_09000 PF01274 Malate synthase IC778_09010 PF02472 Biopolymer transport protein ExbD/TolR IC778_09015 PF02472 Biopolymer transport protein ExbD/TolR IC778_09020 PF01618 MotA/TolQ/ExbB proton channel family IC778_09025 PF03544 Gram-negative bacterial TonB protein C-terminal IC778_09030 PF00593 TonB dependent receptor IC778_09030 PF07715 TonB-dependent Receptor Plug Domain IC778_09050 PF00528 Binding-protein-dependent transport system inner membrane component IC778_09055 PF00528 Binding-protein-dependent transport system inner membrane component IC778_09060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IC778_09060 PF00005 ABC transporter IC778_09075 PF00459 Inositol monophosphatase family IC778_09085 PF01649 Ribosomal protein S20 IC778_09090 PF13460 NAD(P)H-binding IC778_09095 PF03737 Aldolase/RraA IC778_09115 PF02559 CarD-like/TRCF domain IC778_09115 PF00270 DEAD/DEAH box helicase IC778_09115 PF17757 UvrB interaction domain IC778_09115 PF03461 TRCF domain IC778_09115 PF00271 Helicase conserved C-terminal domain IC778_09125 PF00211 Adenylate and Guanylate cyclase catalytic domain IC778_09130 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_09135 PF00012 Hsp70 protein IC778_09140 PF00226 DnaJ domain IC778_09140 PF07743 HSCB C-terminal oligomerisation domain IC778_09145 PF01521 Iron-sulphur cluster biosynthesis IC778_09150 PF01592 NifU-like N terminal domain IC778_09155 PF00266 Aminotransferase class-V IC778_09160 PF02082 Transcriptional regulator IC778_09175 PF00216 Bacterial DNA-binding protein IC778_09180 PF00639 PPIC-type PPIASE domain IC778_09180 PF09312 SurA N-terminal domain IC778_09185 PF12852 Cupin IC778_09185 PF12833 Helix-turn-helix domain IC778_09190 PF00487 Fatty acid desaturase IC778_09195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_09195 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_09195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_09200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_09200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_09200 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_09205 PF03109 ABC1 family IC778_09215 PF04073 Aminoacyl-tRNA editing domain IC778_09220 PF13419 Haloacid dehalogenase-like hydrolase IC778_09230 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IC778_09235 PF02277 Phosphoribosyltransferase IC778_09240 PF00300 Histidine phosphatase superfamily (branch 1) IC778_09250 PF02654 Cobalamin-5-phosphate synthase IC778_09255 PF00793 DAHP synthetase I family IC778_09260 PF01925 Sulfite exporter TauE/SafE IC778_09280 PF07715 TonB-dependent Receptor Plug Domain IC778_09280 PF00593 TonB dependent receptor IC778_09285 PF02684 Lipid-A-disaccharide synthetase IC778_09295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_09300 PF00005 ABC transporter IC778_09335 PF01230 HIT domain IC778_09360 PF08241 Methyltransferase domain IC778_09370 PF01053 Cys/Met metabolism PLP-dependent enzyme IC778_09380 PF02575 YbaB/EbfC DNA-binding family IC778_09385 PF02132 RecR protein IC778_09385 PF13662 Toprim domain IC778_09390 PF00570 HRDC domain IC778_09390 PF01612 3'-5' exonuclease IC778_09410 PF00665 Integrase core domain IC778_09410 PF13936 Helix-turn-helix domain IC778_09415 PF05166 YcgL domain IC778_09425 PF00004 ATPase family associated with various cellular activities (AAA) IC778_09425 PF01434 Peptidase family M41 IC778_09425 PF17862 AAA+ lid domain IC778_09435 PF00291 Pyridoxal-phosphate dependent enzyme IC778_09440 PF05175 Methyltransferase small domain IC778_09445 PF01264 Chorismate synthase IC778_09450 PF05230 MASE2 domain IC778_09450 PF00990 Diguanylate cyclase, GGDEF domain IC778_09465 PF04055 Radical SAM superfamily IC778_09470 PF00676 Dehydrogenase E1 component IC778_09475 PF02780 Transketolase, C-terminal domain IC778_09475 PF02779 Transketolase, pyrimidine binding domain IC778_09480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IC778_09480 PF00364 Biotin-requiring enzyme IC778_09480 PF02817 e3 binding domain IC778_09485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IC778_09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_09490 PF00106 short chain dehydrogenase IC778_09495 PF08240 Alcohol dehydrogenase GroES-like domain IC778_09495 PF00107 Zinc-binding dehydrogenase IC778_09500 PF01062 Bestrophin, RFP-TM, chloride channel IC778_09505 PF00158 Sigma-54 interaction domain IC778_09505 PF00072 Response regulator receiver domain IC778_09505 PF02954 Bacterial regulatory protein, Fis family IC778_09510 PF04273 Putative phosphatase (DUF442) IC778_09510 PF00753 Metallo-beta-lactamase superfamily IC778_09515 PF04273 Putative phosphatase (DUF442) IC778_09515 PF00753 Metallo-beta-lactamase superfamily IC778_09520 PF01925 Sulfite exporter TauE/SafE IC778_09535 PF12833 Helix-turn-helix domain IC778_09535 PF06445 GyrI-like small molecule binding domain IC778_09545 PF00083 Sugar (and other) transporter IC778_09550 PF00593 TonB dependent receptor IC778_09550 PF07715 TonB-dependent Receptor Plug Domain IC778_09555 PF00206 Lyase IC778_09555 PF10415 Fumarase C C-terminus IC778_09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_09570 PF03466 LysR substrate binding domain IC778_09575 PF03466 LysR substrate binding domain IC778_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_09580 PF02803 Thiolase, C-terminal domain IC778_09580 PF00108 Thiolase, N-terminal domain IC778_09585 PF02667 Short chain fatty acid transporter IC778_09590 PF01144 Coenzyme A transferase IC778_09595 PF01144 Coenzyme A transferase IC778_09600 PF03466 LysR substrate binding domain IC778_09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_09625 PF07690 Major Facilitator Superfamily IC778_09655 PF00753 Metallo-beta-lactamase superfamily IC778_09670 PF12833 Helix-turn-helix domain IC778_09670 PF06719 AraC-type transcriptional regulator N-terminus IC778_09675 PF07690 Major Facilitator Superfamily IC778_09685 PF01738 Dienelactone hydrolase family IC778_09700 PF01613 Flavin reductase like domain IC778_09710 PF14525 AraC-binding-like domain IC778_09710 PF12833 Helix-turn-helix domain IC778_09715 PF00970 Oxidoreductase FAD-binding domain IC778_09715 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_09715 PF00175 Oxidoreductase NAD-binding domain IC778_09720 PF00866 Ring hydroxylating beta subunit IC778_09725 PF00355 Rieske [2Fe-2S] domain IC778_09725 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IC778_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_09730 PF03459 TOBE domain IC778_09740 PF00528 Binding-protein-dependent transport system inner membrane component IC778_09745 PF03459 TOBE domain IC778_09745 PF00005 ABC transporter IC778_09760 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IC778_09760 PF01648 4'-phosphopantetheinyl transferase superfamily IC778_09765 PF05977 Transmembrane secretion effector IC778_09770 PF00550 Phosphopantetheine attachment site IC778_09770 PF00668 Condensation domain IC778_09770 PF00501 AMP-binding enzyme IC778_09770 PF13193 AMP-binding enzyme C-terminal domain IC778_09770 PF00975 Thioesterase domain IC778_09775 PF03621 MbtH-like protein IC778_09785 PF00106 short chain dehydrogenase IC778_09790 PF00425 chorismate binding enzyme IC778_09795 PF00501 AMP-binding enzyme IC778_09795 PF13193 AMP-binding enzyme C-terminal domain IC778_09800 PF00857 Isochorismatase family IC778_09800 PF00550 Phosphopantetheine attachment site IC778_09805 PF00873 AcrB/AcrD/AcrF family IC778_09810 PF00593 TonB dependent receptor IC778_09810 PF07715 TonB-dependent Receptor Plug Domain IC778_09820 PF00149 Calcineurin-like phosphoesterase IC778_09825 PF02503 Polyphosphate kinase middle domain IC778_09825 PF17941 Polyphosphate kinase C-terminal domain 1 IC778_09825 PF13090 Polyphosphate kinase C-terminal domain 2 IC778_09825 PF13089 Polyphosphate kinase N-terminal domain IC778_09830 PF08042 PqqA family IC778_09835 PF12706 Beta-lactamase superfamily domain IC778_09840 PF03070 TENA/THI-4/PQQC family IC778_09845 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IC778_09850 PF13186 Iron-sulfur cluster-binding domain IC778_09850 PF04055 Radical SAM superfamily IC778_09855 PF01244 Membrane dipeptidase (Peptidase family M19) IC778_09870 PF00873 AcrB/AcrD/AcrF family IC778_09875 PF00529 HlyD membrane-fusion protein of T1SS IC778_09875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_09880 PF00072 Response regulator receiver domain IC778_09880 PF00486 Transcriptional regulatory protein, C terminal IC778_09895 PF13091 PLD-like domain IC778_09900 PF02548 Ketopantoate hydroxymethyltransferase IC778_09910 PF00199 Catalase IC778_09920 PF00107 Zinc-binding dehydrogenase IC778_09920 PF08240 Alcohol dehydrogenase GroES-like domain IC778_09930 PF00419 Fimbrial protein IC778_09935 PF13954 PapC N-terminal domain IC778_09935 PF00577 Outer membrane usher protein IC778_09935 PF13953 PapC C-terminal domain IC778_09940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IC778_09940 PF02753 Pili assembly chaperone PapD, C-terminal domain IC778_09945 PF16970 Type-1 fimbrial protein, A IC778_09965 PF00296 Luciferase-like monooxygenase IC778_09970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IC778_09975 PF00528 Binding-protein-dependent transport system inner membrane component IC778_09980 PF12911 N-terminal TM domain of oligopeptide transport permease C IC778_09980 PF00528 Binding-protein-dependent transport system inner membrane component IC778_09985 PF00005 ABC transporter IC778_09985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IC778_09990 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_09990 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_09990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_10000 PF00005 ABC transporter IC778_10000 PF00664 ABC transporter transmembrane region IC778_10005 PF00664 ABC transporter transmembrane region IC778_10005 PF00005 ABC transporter IC778_10015 PF07715 TonB-dependent Receptor Plug Domain IC778_10015 PF00593 TonB dependent receptor IC778_10025 PF00296 Luciferase-like monooxygenase IC778_10030 PF00158 Sigma-54 interaction domain IC778_10035 PF00902 Sec-independent protein translocase protein (TatC) IC778_10040 PF02416 mttA/Hcf106 family IC778_10045 PF02416 mttA/Hcf106 family IC778_10050 PF00005 ABC transporter IC778_10055 PF00528 Binding-protein-dependent transport system inner membrane component IC778_10060 PF00528 Binding-protein-dependent transport system inner membrane component IC778_10065 PF09084 NMT1/THI5 like IC778_10070 PF00296 Luciferase-like monooxygenase IC778_10075 PF03544 Gram-negative bacterial TonB protein C-terminal IC778_10080 PF01618 MotA/TolQ/ExbB proton channel family IC778_10085 PF02472 Biopolymer transport protein ExbD/TolR IC778_10090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IC778_10100 PF07715 TonB-dependent Receptor Plug Domain IC778_10100 PF00593 TonB dependent receptor IC778_10105 PF00296 Luciferase-like monooxygenase IC778_10110 PF00528 Binding-protein-dependent transport system inner membrane component IC778_10115 PF00005 ABC transporter IC778_10120 PF03544 Gram-negative bacterial TonB protein C-terminal IC778_10125 PF01618 MotA/TolQ/ExbB proton channel family IC778_10130 PF02472 Biopolymer transport protein ExbD/TolR IC778_10140 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IC778_10150 PF00593 TonB dependent receptor IC778_10150 PF07715 TonB-dependent Receptor Plug Domain IC778_10155 PF00296 Luciferase-like monooxygenase IC778_10160 PF00248 Aldo/keto reductase family IC778_10165 PF07715 TonB-dependent Receptor Plug Domain IC778_10165 PF00593 TonB dependent receptor IC778_10170 PF00884 Sulfatase IC778_10175 PF13545 Crp-like helix-turn-helix domain IC778_10175 PF00027 Cyclic nucleotide-binding domain IC778_10180 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IC778_10235 PF02824 TGS domain IC778_10235 PF04607 Region found in RelA / SpoT proteins IC778_10235 PF13291 ACT domain IC778_10260 PF07690 Major Facilitator Superfamily IC778_10265 PF13533 Biotin-lipoyl like IC778_10270 PF01425 Amidase IC778_10275 PF13936 Helix-turn-helix domain IC778_10275 PF00665 Integrase core domain IC778_10295 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IC778_10300 PF14572 Phosphoribosyl synthetase-associated domain IC778_10300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IC778_10320 PF00005 ABC transporter IC778_10325 PF01032 FecCD transport family IC778_10335 PF00264 Common central domain of tyrosinase IC778_10340 PF07732 Multicopper oxidase IC778_10340 PF07731 Multicopper oxidase IC778_10355 PF00529 HlyD membrane-fusion protein of T1SS IC778_10355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_10365 PF07690 Major Facilitator Superfamily IC778_10370 PF01557 Fumarylacetoacetate (FAA) hydrolase family IC778_10375 PF13417 Glutathione S-transferase, N-terminal domain IC778_10380 PF01494 FAD binding domain IC778_10385 PF07883 Cupin domain IC778_10390 PF03466 LysR substrate binding domain IC778_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_10395 PF07702 UTRA domain IC778_10395 PF00392 Bacterial regulatory proteins, gntR family IC778_10410 PF07690 Major Facilitator Superfamily IC778_10475 PF00440 Bacterial regulatory proteins, tetR family IC778_10475 PF08359 YsiA-like protein, C-terminal region IC778_10480 PF12706 Beta-lactamase superfamily domain IC778_10490 PF09278 MerR, DNA binding IC778_10490 PF00376 MerR family regulatory protein IC778_10500 PF01872 RibD C-terminal domain IC778_10505 PF00106 short chain dehydrogenase IC778_10510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_10510 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_10515 PF00561 alpha/beta hydrolase fold IC778_10530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_10530 PF03466 LysR substrate binding domain IC778_10535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IC778_10535 PF13378 Enolase C-terminal domain-like IC778_10540 PF02426 Muconolactone delta-isomerase IC778_10545 PF00775 Dioxygenase IC778_10545 PF04444 Catechol dioxygenase N terminus IC778_10550 PF01144 Coenzyme A transferase IC778_10555 PF01144 Coenzyme A transferase IC778_10560 PF00108 Thiolase, N-terminal domain IC778_10560 PF02803 Thiolase, C-terminal domain IC778_10565 PF12146 Serine aminopeptidase, S33 IC778_10570 PF00171 Aldehyde dehydrogenase family IC778_10575 PF05199 GMC oxidoreductase IC778_10575 PF00732 GMC oxidoreductase IC778_10585 PF01179 Copper amine oxidase, enzyme domain IC778_10585 PF07833 Copper amine oxidase N-terminal domain IC778_10585 PF02727 Copper amine oxidase, N2 domain IC778_10585 PF02728 Copper amine oxidase, N3 domain IC778_10590 PF02311 AraC-like ligand binding domain IC778_10590 PF12833 Helix-turn-helix domain IC778_10595 PF01613 Flavin reductase like domain IC778_10600 PF00175 Oxidoreductase NAD-binding domain IC778_10600 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_10615 PF00355 Rieske [2Fe-2S] domain IC778_10615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IC778_10630 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IC778_10635 PF01425 Amidase IC778_10645 PF07690 Major Facilitator Superfamily IC778_10655 PF00106 short chain dehydrogenase IC778_10670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_10670 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_10670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_10675 PF03466 LysR substrate binding domain IC778_10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_10680 PF01614 Bacterial transcriptional regulator IC778_10680 PF09339 IclR helix-turn-helix domain IC778_10685 PF00753 Metallo-beta-lactamase superfamily IC778_10695 PF04143 Sulphur transport IC778_10705 PF13360 PQQ-like domain IC778_10705 PF01011 PQQ enzyme repeat IC778_10710 PF04966 Carbohydrate-selective porin, OprB family IC778_10715 PF05048 Periplasmic copper-binding protein (NosD) IC778_10720 PF01487 Type I 3-dehydroquinase IC778_10725 PF00775 Dioxygenase IC778_10730 PF00775 Dioxygenase IC778_10730 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IC778_10735 PF02627 Carboxymuconolactone decarboxylase family IC778_10740 PF07690 Major Facilitator Superfamily IC778_10745 PF00561 alpha/beta hydrolase fold IC778_10750 PF00206 Lyase IC778_10750 PF10397 Adenylosuccinate lyase C-terminus IC778_10755 PF02803 Thiolase, C-terminal domain IC778_10755 PF00108 Thiolase, N-terminal domain IC778_10760 PF01144 Coenzyme A transferase IC778_10765 PF01144 Coenzyme A transferase IC778_10770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IC778_10775 PF04977 Septum formation initiator IC778_10785 PF04239 Protein of unknown function (DUF421) IC778_10790 PF03952 Enolase, N-terminal domain IC778_10790 PF00113 Enolase, C-terminal TIM barrel domain IC778_10795 PF00793 DAHP synthetase I family IC778_10800 PF00117 Glutamine amidotransferase class-I IC778_10800 PF06418 CTP synthase N-terminus IC778_10830 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_10830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_10845 PF00793 DAHP synthetase I family IC778_10850 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IC778_10855 PF00004 ATPase family associated with various cellular activities (AAA) IC778_10855 PF07724 AAA domain (Cdc48 subfamily) IC778_10855 PF02861 Clp amino terminal domain, pathogenicity island component IC778_10855 PF10431 C-terminal, D2-small domain, of ClpB protein IC778_10855 PF17871 AAA lid domain IC778_10860 PF02617 ATP-dependent Clp protease adaptor protein ClpS IC778_10870 PF02774 Semialdehyde dehydrogenase, dimerisation domain IC778_10870 PF01118 Semialdehyde dehydrogenase, NAD binding domain IC778_10885 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IC778_10890 PF00291 Pyridoxal-phosphate dependent enzyme IC778_10890 PF00585 C-terminal regulatory domain of Threonine dehydratase IC778_10895 PF02254 TrkA-N domain IC778_10895 PF02080 TrkA-C domain IC778_10900 PF02386 Cation transport protein IC778_10905 PF02253 Phospholipase A1 IC778_10910 PF05193 Peptidase M16 inactive domain IC778_10910 PF08367 Peptidase M16C associated IC778_10910 PF00675 Insulinase (Peptidase family M16) IC778_10915 PF00593 TonB dependent receptor IC778_10915 PF07715 TonB-dependent Receptor Plug Domain IC778_10920 PF00294 pfkB family carbohydrate kinase IC778_10930 PF07290 Protein of unknown function (DUF1449) IC778_10940 PF01654 Cytochrome bd terminal oxidase subunit I IC778_10945 PF02322 Cytochrome bd terminal oxidase subunit II IC778_10950 PF08173 Membrane bound YbgT-like protein IC778_10975 PF02881 SRP54-type protein, helical bundle domain IC778_10975 PF00448 SRP54-type protein, GTPase domain IC778_11000 PF00571 CBS domain IC778_11005 PF00202 Aminotransferase class-III IC778_11010 PF00462 Glutaredoxin IC778_11020 PF03466 LysR substrate binding domain IC778_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_11025 PF00557 Metallopeptidase family M24 IC778_11030 PF05525 Branched-chain amino acid transport protein IC778_11055 PF00391 PEP-utilising enzyme, mobile domain IC778_11055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IC778_11055 PF05524 PEP-utilising enzyme, N-terminal IC778_11055 PF02896 PEP-utilising enzyme, TIM barrel domain IC778_11055 PF00381 PTS HPr component phosphorylation site IC778_11060 PF00294 pfkB family carbohydrate kinase IC778_11065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IC778_11065 PF02378 Phosphotransferase system, EIIC IC778_11090 PF00665 Integrase core domain IC778_11090 PF13936 Helix-turn-helix domain IC778_11105 PF07995 Glucose / Sorbosone dehydrogenase IC778_11110 PF01740 STAS domain IC778_11110 PF00916 Sulfate permease family IC778_11125 PF00324 Amino acid permease IC778_11130 PF00266 Aminotransferase class-V IC778_11135 PF01037 Lrp/AsnC ligand binding domain IC778_11150 PF13419 Haloacid dehalogenase-like hydrolase IC778_11155 PF01479 S4 domain IC778_11160 PF00154 recA bacterial DNA recombination protein IC778_11165 PF02631 RecX family IC778_11180 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_11180 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IC778_11185 PF07977 FabA-like domain IC778_11190 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_11190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IC778_11200 PF07244 Surface antigen variable number repeat IC778_11200 PF01103 Surface antigen IC778_11205 PF17820 PDZ domain IC778_11205 PF13180 PDZ domain IC778_11205 PF02163 Peptidase family M50 IC778_11210 PF13288 DXP reductoisomerase C-terminal domain IC778_11210 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IC778_11210 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IC778_11220 PF01255 Putative undecaprenyl diphosphate synthase IC778_11225 PF01765 Ribosome recycling factor IC778_11230 PF00696 Amino acid kinase family IC778_11235 PF04055 Radical SAM superfamily IC778_11235 PF18693 TRAM domain IC778_11235 PF00919 Uncharacterized protein family UPF0004 IC778_11245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_11245 PF00989 PAS fold IC778_11245 PF00512 His Kinase A (phospho-acceptor) domain IC778_11250 PF00158 Sigma-54 interaction domain IC778_11250 PF00072 Response regulator receiver domain IC778_11250 PF02954 Bacterial regulatory protein, Fis family IC778_11255 PF00440 Bacterial regulatory proteins, tetR family IC778_11260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IC778_11260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IC778_11270 PF02542 YgbB family IC778_11280 PF01266 FAD dependent oxidoreductase IC778_11300 PF10415 Fumarase C C-terminus IC778_11300 PF00206 Lyase IC778_11305 PF16363 GDP-mannose 4,6 dehydratase IC778_11310 PF02635 DsrE/DsrF-like family IC778_11330 PF00892 EamA-like transporter family IC778_11340 PF01638 HxlR-like helix-turn-helix IC778_11345 PF03453 MoeA N-terminal region (domain I and II) IC778_11345 PF03454 MoeA C-terminal region (domain IV) IC778_11345 PF00994 Probable molybdopterin binding domain IC778_11350 PF00994 Probable molybdopterin binding domain IC778_11350 PF01967 MoaC family IC778_11355 PF02391 MoaE protein IC778_11365 PF04055 Radical SAM superfamily IC778_11365 PF06463 Molybdenum Cofactor Synthesis C IC778_11370 PF00384 Molybdopterin oxidoreductase IC778_11370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IC778_11370 PF01568 Molydopterin dinucleotide binding domain IC778_11375 PF12804 MobA-like NTP transferase domain IC778_11380 PF04324 BFD-like [2Fe-2S] binding domain IC778_11380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IC778_11380 PF00384 Molybdopterin oxidoreductase IC778_11380 PF01568 Molydopterin dinucleotide binding domain IC778_11385 PF04324 BFD-like [2Fe-2S] binding domain IC778_11385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IC778_11385 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_11385 PF18267 Rubredoxin NAD+ reductase C-terminal domain IC778_11385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IC778_11390 PF18267 Rubredoxin NAD+ reductase C-terminal domain IC778_11390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IC778_11390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IC778_11390 PF13806 Rieske-like [2Fe-2S] domain IC778_11390 PF04324 BFD-like [2Fe-2S] binding domain IC778_11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_11400 PF00072 Response regulator receiver domain IC778_11400 PF00486 Transcriptional regulatory protein, C terminal IC778_11405 PF00005 ABC transporter IC778_11415 PF13438 Domain of unknown function (DUF4113) IC778_11415 PF11799 impB/mucB/samB family C-terminal domain IC778_11415 PF00817 impB/mucB/samB family IC778_11420 PF01220 Dehydroquinase class II IC778_11425 PF00364 Biotin-requiring enzyme IC778_11430 PF00289 Biotin carboxylase, N-terminal domain IC778_11430 PF02785 Biotin carboxylase C-terminal domain IC778_11430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_11460 PF00577 Outer membrane usher protein IC778_11460 PF13953 PapC C-terminal domain IC778_11460 PF13954 PapC N-terminal domain IC778_11485 PF01645 Conserved region in glutamate synthase IC778_11510 PF01565 FAD binding domain IC778_11510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IC778_11515 PF01451 Low molecular weight phosphotyrosine protein phosphatase IC778_11525 PF01638 HxlR-like helix-turn-helix IC778_11530 PF00857 Isochorismatase family IC778_11540 PF00465 Iron-containing alcohol dehydrogenase IC778_11545 PF03061 Thioesterase superfamily IC778_11550 PF04185 Phosphoesterase family IC778_11550 PF05506 Domain of unknown function (DUF756) IC778_11555 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IC778_11555 PF12170 DNA polymerase III tau subunit V interacting with alpha IC778_11555 PF12169 DNA polymerase III subunits gamma and tau domain III IC778_11570 PF07690 Major Facilitator Superfamily IC778_11580 PF00144 Beta-lactamase IC778_11585 PF01575 MaoC like domain IC778_11595 PF02803 Thiolase, C-terminal domain IC778_11595 PF00108 Thiolase, N-terminal domain IC778_11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_11605 PF03466 LysR substrate binding domain IC778_11610 PF00923 Transaldolase/Fructose-6-phosphate aldolase IC778_11615 PF01810 LysE type translocator IC778_11620 PF01037 Lrp/AsnC ligand binding domain IC778_11625 PF03594 Benzoate membrane transport protein IC778_11630 PF02308 MgtC family IC778_11650 PF00582 Universal stress protein family IC778_11655 PF00005 ABC transporter IC778_11655 PF16326 ABC transporter C-terminal domain IC778_11655 PF12848 ABC transporter IC778_11700 PF00924 Mechanosensitive ion channel IC778_11710 PF00291 Pyridoxal-phosphate dependent enzyme IC778_11715 PF02423 Ornithine cyclodeaminase/mu-crystallin family IC778_11720 PF06276 Ferric iron reductase FhuF-like transporter IC778_11720 PF04183 IucA / IucC family IC778_11725 PF07690 Major Facilitator Superfamily IC778_11730 PF06276 Ferric iron reductase FhuF-like transporter IC778_11730 PF04183 IucA / IucC family IC778_11735 PF03328 HpcH/HpaI aldolase/citrate lyase family IC778_11740 PF07715 TonB-dependent Receptor Plug Domain IC778_11740 PF00593 TonB dependent receptor IC778_11770 PF00665 Integrase core domain IC778_11770 PF13936 Helix-turn-helix domain IC778_11775 PF01037 Lrp/AsnC ligand binding domain IC778_11780 PF01817 Chorismate mutase type II IC778_11795 PF02798 Glutathione S-transferase, N-terminal domain IC778_11810 PF13954 PapC N-terminal domain IC778_11810 PF13953 PapC C-terminal domain IC778_11810 PF00577 Outer membrane usher protein IC778_11825 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IC778_11825 PF11940 Domain of unknown function (DUF3458) Ig-like fold IC778_11825 PF01433 Peptidase family M1 domain IC778_11840 PF02110 Hydroxyethylthiazole kinase family IC778_11845 PF06445 GyrI-like small molecule binding domain IC778_11855 PF05970 PIF1-like helicase IC778_11855 PF14493 Helix-turn-helix domain IC778_11860 PF00465 Iron-containing alcohol dehydrogenase IC778_11875 PF00171 Aldehyde dehydrogenase family IC778_11880 PF13520 Amino acid permease IC778_11885 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IC778_11890 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IC778_11895 PF00958 GMP synthase C terminal domain IC778_11895 PF00117 Glutamine amidotransferase class-I IC778_11895 PF02540 NAD synthase IC778_11900 PF00749 tRNA synthetases class I (E and Q), catalytic domain IC778_11900 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IC778_11905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IC778_11910 PF00149 Calcineurin-like phosphoesterase IC778_11920 PF00881 Nitroreductase family IC778_11930 PF17209 Hfq protein IC778_11940 PF08676 MutL C terminal dimerisation domain IC778_11940 PF01119 DNA mismatch repair protein, C-terminal domain IC778_11945 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IC778_11950 PF01479 S4 domain IC778_11950 PF00849 RNA pseudouridylate synthase IC778_11965 PF01479 S4 domain IC778_11965 PF00849 RNA pseudouridylate synthase IC778_11975 PF04284 Protein of unknown function (DUF441) IC778_11980 PF03466 LysR substrate binding domain IC778_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_11990 PF07690 Major Facilitator Superfamily IC778_11995 PF00027 Cyclic nucleotide-binding domain IC778_11995 PF00520 Ion transport protein IC778_12005 PF11791 Aconitate B N-terminal domain IC778_12005 PF00330 Aconitase family (aconitate hydratase) IC778_12005 PF06434 Aconitate hydratase 2 N-terminus IC778_12025 PF17243 POTRA domain TamA domain 1 IC778_12025 PF07244 Surface antigen variable number repeat IC778_12025 PF01103 Surface antigen IC778_12030 PF07690 Major Facilitator Superfamily IC778_12035 PF03232 Ubiquinone biosynthesis protein COQ7 IC778_12045 PF00120 Glutamine synthetase, catalytic domain IC778_12050 PF00072 Response regulator receiver domain IC778_12050 PF00486 Transcriptional regulatory protein, C terminal IC778_12055 PF02702 Osmosensitive K+ channel His kinase sensor domain IC778_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_12055 PF00512 His Kinase A (phospho-acceptor) domain IC778_12055 PF13493 Domain of unknown function (DUF4118) IC778_12060 PF02669 K+-transporting ATPase, c chain IC778_12070 PF03814 Potassium-transporting ATPase A subunit IC778_12085 PF03109 ABC1 family IC778_12090 PF00899 ThiF family IC778_12095 PF01613 Flavin reductase like domain IC778_12100 PF00501 AMP-binding enzyme IC778_12100 PF13193 AMP-binding enzyme C-terminal domain IC778_12105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_12105 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_12105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_12110 PF00106 short chain dehydrogenase IC778_12115 PF12833 Helix-turn-helix domain IC778_12120 PF09084 NMT1/THI5 like IC778_12125 PF00528 Binding-protein-dependent transport system inner membrane component IC778_12130 PF17827 PrmC N-terminal domain IC778_12130 PF13847 Methyltransferase domain IC778_12135 PF00472 RF-1 domain IC778_12135 PF03462 PCRF domain IC778_12150 PF00296 Luciferase-like monooxygenase IC778_12160 PF13994 PgaD-like protein IC778_12165 PF00535 Glycosyl transferase family 2 IC778_12170 PF01522 Polysaccharide deacetylase IC778_12170 PF14883 Hypothetical glycosyl hydrolase family 13 IC778_12180 PF03618 Kinase/pyrophosphorylase IC778_12185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IC778_12185 PF02896 PEP-utilising enzyme, TIM barrel domain IC778_12185 PF00391 PEP-utilising enzyme, mobile domain IC778_12195 PF06481 COX Aromatic Rich Motif IC778_12195 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IC778_12200 PF00115 Cytochrome C and Quinol oxidase polypeptide I IC778_12205 PF00510 Cytochrome c oxidase subunit III IC778_12210 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IC778_12215 PF01040 UbiA prenyltransferase family IC778_12220 PF01250 Ribosomal protein S6 IC778_12225 PF01084 Ribosomal protein S18 IC778_12230 PF03948 Ribosomal protein L9, C-terminal domain IC778_12230 PF01281 Ribosomal protein L9, N-terminal domain IC778_12235 PF00772 DnaB-like helicase N terminal domain IC778_12235 PF03796 DnaB-like helicase C terminal domain IC778_12240 PF01168 Alanine racemase, N-terminal domain IC778_12240 PF00842 Alanine racemase, C-terminal domain IC778_12250 PF08379 Bacterial transglutaminase-like N-terminal region IC778_12250 PF01841 Transglutaminase-like superfamily IC778_12260 PF14403 Circularly permuted ATP-grasp type 2 IC778_12290 PF02954 Bacterial regulatory protein, Fis family IC778_12295 PF01808 AICARFT/IMPCHase bienzyme IC778_12295 PF02142 MGS-like domain IC778_12300 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IC778_12300 PF02843 Phosphoribosylglycinamide synthetase, C domain IC778_12300 PF02844 Phosphoribosylglycinamide synthetase, N domain IC778_12305 PF03180 NLPA lipoprotein IC778_12310 PF00005 ABC transporter IC778_12310 PF09383 NIL domain IC778_12315 PF00528 Binding-protein-dependent transport system inner membrane component IC778_12320 PF00753 Metallo-beta-lactamase superfamily IC778_12320 PF16123 Hydroxyacylglutathione hydrolase C-terminus IC778_12330 PF00375 Sodium:dicarboxylate symporter family IC778_12350 PF07995 Glucose / Sorbosone dehydrogenase IC778_12375 PF03601 Conserved hypothetical protein 698 IC778_12390 PF07690 Major Facilitator Superfamily IC778_12395 PF05853 beta-keto acid cleavage enzyme IC778_12400 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IC778_12405 PF08240 Alcohol dehydrogenase GroES-like domain IC778_12405 PF00107 Zinc-binding dehydrogenase IC778_12425 PF00072 Response regulator receiver domain IC778_12425 PF00486 Transcriptional regulatory protein, C terminal IC778_12430 PF08521 Two-component sensor kinase N-terminal IC778_12430 PF00512 His Kinase A (phospho-acceptor) domain IC778_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_12480 PF00672 HAMP domain IC778_12480 PF00512 His Kinase A (phospho-acceptor) domain IC778_12485 PF00486 Transcriptional regulatory protein, C terminal IC778_12485 PF00072 Response regulator receiver domain IC778_12495 PF00576 HIUase/Transthyretin family IC778_12505 PF02470 MlaD protein IC778_12510 PF04403 Paraquat-inducible protein A IC778_12520 PF03466 LysR substrate binding domain IC778_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_12535 PF06826 Predicted Permease Membrane Region IC778_12535 PF02080 TrkA-C domain IC778_12540 PF00155 Aminotransferase class I and II IC778_12550 PF12833 Helix-turn-helix domain IC778_12550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IC778_12550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IC778_12550 PF02805 Metal binding domain of Ada IC778_12560 PF00440 Bacterial regulatory proteins, tetR family IC778_12640 PF02254 TrkA-N domain IC778_12640 PF00999 Sodium/hydrogen exchanger family IC778_12645 PF03616 Sodium/glutamate symporter IC778_12650 PF12833 Helix-turn-helix domain IC778_12650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IC778_12655 PF01370 NAD dependent epimerase/dehydratase family IC778_12665 PF00561 alpha/beta hydrolase fold IC778_12675 PF00743 Flavin-binding monooxygenase-like IC778_12685 PF03466 LysR substrate binding domain IC778_12685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_12690 PF00857 Isochorismatase family IC778_12740 PF00324 Amino acid permease IC778_12745 PF00171 Aldehyde dehydrogenase family IC778_12750 PF00202 Aminotransferase class-III IC778_12760 PF00665 Integrase core domain IC778_12760 PF13936 Helix-turn-helix domain IC778_12800 PF03793 PASTA domain IC778_12800 PF00069 Protein kinase domain IC778_12820 PF00814 Glycoprotease family IC778_12825 PF01165 Ribosomal protein S21 IC778_12830 PF09424 Yqey-like protein IC778_12835 PF01435 Peptidase family M48 IC778_12840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IC778_12840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IC778_12855 PF00156 Phosphoribosyl transferase domain IC778_12865 PF01180 Dihydroorotate dehydrogenase IC778_12885 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IC778_12885 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IC778_12890 PF00881 Nitroreductase family IC778_12900 PF00271 Helicase conserved C-terminal domain IC778_12900 PF00270 DEAD/DEAH box helicase IC778_12905 PF00313 'Cold-shock' DNA-binding domain IC778_12915 PF04542 Sigma-70 region 2 IC778_12915 PF04545 Sigma-70, region 4 IC778_12915 PF00140 Sigma-70 factor, region 1.2 IC778_12920 PF04241 Protein of unknown function (DUF423) IC778_12930 PF05690 Thiazole biosynthesis protein ThiG IC778_12935 PF03883 Peroxide stress protein YaaA IC778_12945 PF06956 Regulator of RNA terminal phosphate cyclase IC778_12945 PF00158 Sigma-54 interaction domain IC778_12950 PF00753 Metallo-beta-lactamase superfamily IC778_12955 PF01139 tRNA-splicing ligase RtcB IC778_12970 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain IC778_12970 PF01137 RNA 3'-terminal phosphate cyclase IC778_12975 PF01546 Peptidase family M20/M25/M40 IC778_12975 PF07687 Peptidase dimerisation domain IC778_12980 PF03781 Sulfatase-modifying factor enzyme 1 IC778_12990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IC778_12995 PF00800 Prephenate dehydratase IC778_12995 PF01817 Chorismate mutase type II IC778_12995 PF01842 ACT domain IC778_13010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_13010 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_13010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_13015 PF00375 Sodium:dicarboxylate symporter family IC778_13020 PF02885 Glycosyl transferase family, helical bundle domain IC778_13020 PF00591 Glycosyl transferase family, a/b domain IC778_13025 PF07023 Protein of unknown function (DUF1315) IC778_13030 PF01513 ATP-NAD kinase IC778_13035 PF14814 Bifunctional transglycosylase second domain IC778_13035 PF00905 Penicillin binding protein transpeptidase domain IC778_13035 PF00912 Transglycosylase IC778_13045 PF00293 NUDIX domain IC778_13055 PF08521 Two-component sensor kinase N-terminal IC778_13055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_13055 PF00512 His Kinase A (phospho-acceptor) domain IC778_13060 PF00486 Transcriptional regulatory protein, C terminal IC778_13060 PF00072 Response regulator receiver domain IC778_13070 PF00437 Type II/IV secretion system protein IC778_13070 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IC778_13080 PF18389 TrmO C-terminal domain IC778_13080 PF01980 tRNA-methyltransferase O IC778_13085 PF00970 Oxidoreductase FAD-binding domain IC778_13085 PF00175 Oxidoreductase NAD-binding domain IC778_13090 PF02567 Phenazine biosynthesis-like protein IC778_13095 PF00155 Aminotransferase class I and II IC778_13095 PF00392 Bacterial regulatory proteins, gntR family IC778_13100 PF16325 Peptidase family U32 C-terminal domain IC778_13100 PF01136 Peptidase family U32 IC778_13105 PF00037 4Fe-4S binding domain IC778_13110 PF00893 Small Multidrug Resistance protein IC778_13115 PF00005 ABC transporter IC778_13120 PF00528 Binding-protein-dependent transport system inner membrane component IC778_13125 PF00528 Binding-protein-dependent transport system inner membrane component IC778_13130 PF00497 Bacterial extracellular solute-binding proteins, family 3 IC778_13135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_13135 PF03466 LysR substrate binding domain IC778_13140 PF13533 Biotin-lipoyl like IC778_13145 PF00873 AcrB/AcrD/AcrF family IC778_13150 PF02321 Outer membrane efflux protein IC778_13155 PF00464 Serine hydroxymethyltransferase IC778_13180 PF00005 ABC transporter IC778_13185 PF01061 ABC-2 type transporter IC778_13190 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IC778_13190 PF14489 QueF-like protein IC778_13200 PF01098 Cell cycle protein IC778_13205 PF13406 Transglycosylase SLT domain IC778_13210 PF05036 Sporulation related domain IC778_13210 PF03330 Lytic transglycolase IC778_13230 PF12833 Helix-turn-helix domain IC778_13240 PF00889 Elongation factor TS IC778_13245 PF00318 Ribosomal protein S2 IC778_13250 PF00557 Metallopeptidase family M24 IC778_13260 PF07690 Major Facilitator Superfamily IC778_13270 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_13270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IC778_13275 PF04055 Radical SAM superfamily IC778_13280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_13280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_13280 PF09317 Domain of unknown function (DUF1974) IC778_13295 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IC778_13295 PF05221 S-adenosyl-L-homocysteine hydrolase IC778_13300 PF02219 Methylenetetrahydrofolate reductase IC778_13305 PF04452 RNA methyltransferase IC778_13310 PF00990 Diguanylate cyclase, GGDEF domain IC778_13310 PF00563 EAL domain IC778_13310 PF03707 Bacterial signalling protein N terminal repeat IC778_13315 PF03949 Malic enzyme, NAD binding domain IC778_13315 PF00390 Malic enzyme, N-terminal domain IC778_13315 PF01515 Phosphate acetyl/butaryl transferase IC778_13320 PF12627 Probable RNA and SrmB- binding site of polymerase A IC778_13320 PF01743 Poly A polymerase head domain IC778_13325 PF13180 PDZ domain IC778_13330 PF01784 NIF3 (NGG1p interacting factor 3) IC778_13335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IC778_13335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IC778_13370 PF01040 UbiA prenyltransferase family IC778_13375 PF04345 Chorismate lyase IC778_13380 PF03951 Glutamine synthetase, beta-Grasp domain IC778_13380 PF00120 Glutamine synthetase, catalytic domain IC778_13385 PF00854 POT family IC778_13395 PF00117 Glutamine amidotransferase class-I IC778_13400 PF02885 Glycosyl transferase family, helical bundle domain IC778_13400 PF00591 Glycosyl transferase family, a/b domain IC778_13405 PF00218 Indole-3-glycerol phosphate synthase IC778_13410 PF01713 Smr domain IC778_13420 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IC778_13420 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IC778_13425 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IC778_13425 PF01799 [2Fe-2S] binding domain IC778_13425 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IC778_13425 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_13430 PF01227 GTP cyclohydrolase I IC778_13435 PF00144 Beta-lactamase IC778_13450 PF05675 Protein of unknown function (DUF817) IC778_13455 PF01208 Uroporphyrinogen decarboxylase (URO-D) IC778_13465 PF02678 Pirin IC778_13465 PF17954 Quercetinase C-terminal cupin domain IC778_13475 PF01757 Acyltransferase family IC778_13480 PF13936 Helix-turn-helix domain IC778_13480 PF00665 Integrase core domain IC778_13490 PF08348 YheO-like PAS domain IC778_13490 PF13309 HTH domain IC778_13495 PF00291 Pyridoxal-phosphate dependent enzyme IC778_13500 PF02423 Ornithine cyclodeaminase/mu-crystallin family IC778_13505 PF02789 Cytosol aminopeptidase family, N-terminal domain IC778_13505 PF00883 Cytosol aminopeptidase family, catalytic domain IC778_13525 PF03466 LysR substrate binding domain IC778_13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_13530 PF09828 Chromate resistance exported protein IC778_13535 PF02417 Chromate transporter IC778_13545 PF07690 Major Facilitator Superfamily IC778_13565 PF02705 K+ potassium transporter IC778_13575 PF04328 Selenoprotein, putative IC778_13580 PF02554 Carbon starvation protein CstA IC778_13580 PF13722 5TM C-terminal transporter carbon starvation CstA IC778_13585 PF01132 Elongation factor P (EF-P) OB domain IC778_13585 PF08207 Elongation factor P (EF-P) KOW-like domain IC778_13585 PF09285 Elongation factor P, C-terminal IC778_13590 PF04055 Radical SAM superfamily IC778_13600 PF00563 EAL domain IC778_13600 PF12792 CSS motif domain associated with EAL IC778_13605 PF01197 Ribosomal protein L31 IC778_13610 PF13593 SBF-like CPA transporter family (DUF4137) IC778_13615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IC778_13620 PF07690 Major Facilitator Superfamily IC778_13625 PF13654 AAA domain IC778_13625 PF05362 Lon protease (S16) C-terminal proteolytic domain IC778_13630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_13630 PF03466 LysR substrate binding domain IC778_13635 PF01551 Peptidase family M23 IC778_13635 PF01476 LysM domain IC778_13640 PF01975 Survival protein SurE IC778_13655 PF07943 Penicillin-binding protein 5, C-terminal domain IC778_13655 PF00768 D-alanyl-D-alanine carboxypeptidase IC778_13660 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_13665 PF00293 NUDIX domain IC778_13675 PF04356 Protein of unknown function (DUF489) IC778_13680 PF00206 Lyase IC778_13680 PF08328 Adenylosuccinate lyase C-terminal IC778_13685 PF09997 Predicted membrane protein (DUF2238) IC778_13700 PF01343 Peptidase family S49 IC778_13700 PF08496 Peptidase family S49 N-terminal IC778_13705 PF00005 ABC transporter IC778_13710 PF00528 Binding-protein-dependent transport system inner membrane component IC778_13715 PF00528 Binding-protein-dependent transport system inner membrane component IC778_13720 PF12849 PBP superfamily domain IC778_13725 PF00324 Amino acid permease IC778_13730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IC778_13730 PF00205 Thiamine pyrophosphate enzyme, central domain IC778_13730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IC778_13735 PF01037 Lrp/AsnC ligand binding domain IC778_13740 PF00171 Aldehyde dehydrogenase family IC778_13745 PF00282 Pyridoxal-dependent decarboxylase conserved domain IC778_13750 PF00202 Aminotransferase class-III IC778_13770 PF00487 Fatty acid desaturase IC778_13775 PF00175 Oxidoreductase NAD-binding domain IC778_13775 PF00111 2Fe-2S iron-sulfur cluster binding domain IC778_13775 PF00970 Oxidoreductase FAD-binding domain IC778_13780 PF00440 Bacterial regulatory proteins, tetR family IC778_13790 PF00176 SNF2 family N-terminal domain IC778_13790 PF00271 Helicase conserved C-terminal domain IC778_13790 PF12137 RNA polymerase recycling family C-terminal IC778_13790 PF18337 RapA N-terminal Tudor like domain IC778_13790 PF18339 RapA N-terminal Tudor like domain 1 IC778_13795 PF00849 RNA pseudouridylate synthase IC778_13805 PF00202 Aminotransferase class-III IC778_13810 PF02581 Thiamine monophosphate synthase IC778_13845 PF00675 Insulinase (Peptidase family M16) IC778_13845 PF05193 Peptidase M16 inactive domain IC778_13850 PF02567 Phenazine biosynthesis-like protein IC778_13855 PF00375 Sodium:dicarboxylate symporter family IC778_13860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_13860 PF03466 LysR substrate binding domain IC778_13865 PF06779 Uncharacterised MFS-type transporter YbfB IC778_13885 PF00180 Isocitrate/isopropylmalate dehydrogenase IC778_13890 PF00849 RNA pseudouridylate synthase IC778_13895 PF03971 Monomeric isocitrate dehydrogenase IC778_13905 PF07943 Penicillin-binding protein 5, C-terminal domain IC778_13905 PF00768 D-alanyl-D-alanine carboxypeptidase IC778_13910 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_13915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IC778_13920 PF03441 FAD binding domain of DNA photolyase IC778_13920 PF00875 DNA photolyase IC778_13950 PF02350 UDP-N-acetylglucosamine 2-epimerase IC778_13965 PF03060 Nitronate monooxygenase IC778_13970 PF01207 Dihydrouridine synthase (Dus) IC778_13975 PF07759 Protein of unknown function (DUF1615) IC778_13985 PF01472 PUA domain IC778_13985 PF00696 Amino acid kinase family IC778_13990 PF01926 50S ribosome-binding GTPase IC778_13990 PF01018 GTP1/OBG IC778_14005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IC778_14005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IC778_14020 PF00271 Helicase conserved C-terminal domain IC778_14020 PF12344 Ultra-violet resistance protein B IC778_14020 PF04851 Type III restriction enzyme, res subunit IC778_14020 PF17757 UvrB interaction domain IC778_14020 PF02151 UvrB/uvrC motif IC778_14025 PF00990 Diguanylate cyclase, GGDEF domain IC778_14035 PF17151 Periplasmic sensor domain IC778_14035 PF00990 Diguanylate cyclase, GGDEF domain IC778_14045 PF00155 Aminotransferase class I and II IC778_14070 PF00106 short chain dehydrogenase IC778_14075 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IC778_14080 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IC778_14085 PF02565 Recombination protein O C terminal IC778_14085 PF11967 Recombination protein O N terminal IC778_14095 PF01926 50S ribosome-binding GTPase IC778_14095 PF07650 KH domain IC778_14100 PF00035 Double-stranded RNA binding motif IC778_14100 PF14622 Ribonuclease-III-like IC778_14110 PF10502 Signal peptidase, peptidase S26 IC778_14115 PF00009 Elongation factor Tu GTP binding domain IC778_14115 PF00679 Elongation factor G C-terminus IC778_14115 PF06421 GTP-binding protein LepA C-terminus IC778_14115 PF03144 Elongation factor Tu domain 2 IC778_14125 PF13180 PDZ domain IC778_14130 PF02910 Fumarate reductase flavoprotein C-term IC778_14130 PF00890 FAD binding domain IC778_14140 PF02223 Thymidylate kinase IC778_14145 PF02618 YceG-like family IC778_14150 PF01063 Amino-transferase class IV IC778_14165 PF00528 Binding-protein-dependent transport system inner membrane component IC778_14170 PF00528 Binding-protein-dependent transport system inner membrane component IC778_14175 PF00005 ABC transporter IC778_14175 PF12857 TOBE-like domain IC778_14180 PF03466 LysR substrate binding domain IC778_14180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_14190 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_14190 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IC778_14190 PF14602 Hexapeptide repeat of succinyl-transferase IC778_14195 PF04055 Radical SAM superfamily IC778_14200 PF06508 Queuosine biosynthesis protein QueC IC778_14210 PF06508 Queuosine biosynthesis protein QueC IC778_14215 PF00578 AhpC/TSA family IC778_14230 PF01467 Cytidylyltransferase-like IC778_14230 PF00293 NUDIX domain IC778_14235 PF00378 Enoyl-CoA hydratase/isomerase IC778_14240 PF01784 NIF3 (NGG1p interacting factor 3) IC778_14260 PF07690 Major Facilitator Superfamily IC778_14265 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IC778_14265 PF02769 AIR synthase related protein, C-terminal domain IC778_14265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IC778_14270 PF01966 HD domain IC778_14280 PF07499 RuvA, C-terminal domain IC778_14280 PF01330 RuvA N terminal domain IC778_14285 PF05491 RuvB C-terminal winged helix domain IC778_14285 PF05496 Holliday junction DNA helicase RuvB P-loop domain IC778_14285 PF17864 RuvB AAA lid domain IC778_14290 PF01546 Peptidase family M20/M25/M40 IC778_14290 PF07687 Peptidase dimerisation domain IC778_14295 PF03061 Thioesterase superfamily IC778_14300 PF01618 MotA/TolQ/ExbB proton channel family IC778_14305 PF02472 Biopolymer transport protein ExbD/TolR IC778_14315 PF04052 TolB amino-terminal domain IC778_14315 PF07676 WD40-like Beta Propeller Repeat IC778_14320 PF00691 OmpA family IC778_14330 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IC778_14335 PF08032 RNA 2'-O ribose methyltransferase substrate binding IC778_14335 PF00588 SpoU rRNA Methylase family IC778_14365 PF00308 Bacterial dnaA protein IC778_14365 PF08299 Bacterial dnaA protein helix-turn-helix IC778_14365 PF11638 DnaA N-terminal domain IC778_14370 PF01594 AI-2E family transporter IC778_14375 PF00586 AIR synthase related protein, N-terminal domain IC778_14375 PF02769 AIR synthase related protein, C-terminal domain IC778_14380 PF00551 Formyl transferase IC778_14385 PF12697 Alpha/beta hydrolase family IC778_14390 PF06965 Na+/H+ antiporter 1 IC778_14390 PF01343 Peptidase family S49 IC778_14400 PF13567 Domain of unknown function (DUF4131) IC778_14400 PF03772 Competence protein IC778_14400 PF00753 Metallo-beta-lactamase superfamily IC778_14405 PF00005 ABC transporter IC778_14410 PF02687 FtsX-like permease family IC778_14410 PF12704 MacB-like periplasmic core domain IC778_14420 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IC778_14435 PF00266 Aminotransferase class-V IC778_14445 PF13533 Biotin-lipoyl like IC778_14465 PF00535 Glycosyl transferase family 2 IC778_14475 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IC778_14480 PF00521 DNA gyrase/topoisomerase IV, subunit A IC778_14480 PF03989 DNA gyrase C-terminal domain, beta-propeller IC778_14485 PF16123 Hydroxyacylglutathione hydrolase C-terminus IC778_14485 PF00753 Metallo-beta-lactamase superfamily IC778_14495 PF00766 Electron transfer flavoprotein FAD-binding domain IC778_14495 PF01012 Electron transfer flavoprotein domain IC778_14500 PF01012 Electron transfer flavoprotein domain IC778_14505 PF02899 Phage integrase, N-terminal SAM-like domain IC778_14505 PF00589 Phage integrase family IC778_14510 PF01810 LysE type translocator IC778_14520 PF01678 Diaminopimelate epimerase IC778_14525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IC778_14525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IC778_14535 PF00324 Amino acid permease IC778_14540 PF01235 Sodium:alanine symporter family IC778_14545 PF18073 Rubredoxin metal binding domain IC778_14555 PF00152 tRNA synthetases class II (D, K and N) IC778_14560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IC778_14560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IC778_14560 PF11890 Domain of unknown function (DUF3410) IC778_14600 PF00216 Bacterial DNA-binding protein IC778_14665 PF10502 Signal peptidase, peptidase S26 IC778_14695 PF11985 Protein of unknown function (DUF3486) IC778_14700 PF03237 Terminase-like family IC778_14710 PF06074 Protein of unknown function (DUF935) IC778_14735 PF10124 Mu-like prophage major head subunit gpT IC778_14825 PF02634 FdhD/NarQ family IC778_14830 PF00384 Molybdopterin oxidoreductase IC778_14835 PF02595 Glycerate kinase family IC778_14850 PF00881 Nitroreductase family IC778_14855 PF00873 AcrB/AcrD/AcrF family IC778_14860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_14860 PF00529 HlyD membrane-fusion protein of T1SS IC778_14880 PF00171 Aldehyde dehydrogenase family IC778_14885 PF05199 GMC oxidoreductase IC778_14885 PF00732 GMC oxidoreductase IC778_14890 PF03466 LysR substrate binding domain IC778_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_14900 PF00561 alpha/beta hydrolase fold IC778_14905 PF00364 Biotin-requiring enzyme IC778_14905 PF00561 alpha/beta hydrolase fold IC778_14910 PF00364 Biotin-requiring enzyme IC778_14910 PF00561 alpha/beta hydrolase fold IC778_14915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_14920 PF00440 Bacterial regulatory proteins, tetR family IC778_14980 PF09857 Putative toxin of bacterial toxin-antitoxin pair IC778_15000 PF00975 Thioesterase domain IC778_15000 PF00550 Phosphopantetheine attachment site IC778_15000 PF00668 Condensation domain IC778_15000 PF13193 AMP-binding enzyme C-terminal domain IC778_15000 PF00501 AMP-binding enzyme IC778_15005 PF02321 Outer membrane efflux protein IC778_15010 PF00873 AcrB/AcrD/AcrF family IC778_15015 PF00873 AcrB/AcrD/AcrF family IC778_15020 PF13533 Biotin-lipoyl like IC778_15035 PF09339 IclR helix-turn-helix domain IC778_15040 PF02515 CoA-transferase family III IC778_15045 PF00108 Thiolase, N-terminal domain IC778_15045 PF02803 Thiolase, C-terminal domain IC778_15050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_15050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_15050 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IC778_15055 PF00378 Enoyl-CoA hydratase/isomerase IC778_15060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_15060 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_15060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_15070 PF00743 Flavin-binding monooxygenase-like IC778_15075 PF00171 Aldehyde dehydrogenase family IC778_15110 PF00107 Zinc-binding dehydrogenase IC778_15110 PF08240 Alcohol dehydrogenase GroES-like domain IC778_15130 PF01272 Transcription elongation factor, GreA/GreB, C-term IC778_15130 PF03449 Transcription elongation factor, N-terminal IC778_15145 PF02899 Phage integrase, N-terminal SAM-like domain IC778_15145 PF00589 Phage integrase family IC778_15170 PF10544 T5orf172 domain IC778_15185 PF07693 KAP family P-loop domain IC778_15210 PF01555 DNA methylase IC778_15230 PF01272 Transcription elongation factor, GreA/GreB, C-term IC778_15230 PF03449 Transcription elongation factor, N-terminal IC778_15255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IC778_15255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IC778_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 IC778_15260 PF01464 Transglycosylase SLT domain IC778_15270 PF01171 PP-loop family IC778_15275 PF01464 Transglycosylase SLT domain IC778_15280 PF01435 Peptidase family M48 IC778_15290 PF00873 AcrB/AcrD/AcrF family IC778_15295 PF03009 Glycerophosphoryl diester phosphodiesterase family IC778_15300 PF00753 Metallo-beta-lactamase superfamily IC778_15305 PF01219 Prokaryotic diacylglycerol kinase IC778_15310 PF00118 TCP-1/cpn60 chaperonin family IC778_15315 PF00166 Chaperonin 10 Kd subunit IC778_15320 PF00149 Calcineurin-like phosphoesterase IC778_15325 PF00781 Diacylglycerol kinase catalytic domain IC778_15330 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain IC778_15330 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain IC778_15335 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IC778_15335 PF01266 FAD dependent oxidoreductase IC778_15340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IC778_15340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IC778_15345 PF00083 Sugar (and other) transporter IC778_15360 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IC778_15360 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IC778_15375 PF16655 PhoD-like phosphatase, N-terminal domain IC778_15375 PF09423 PhoD-like phosphatase IC778_15395 PF00809 Pterin binding enzyme IC778_15400 PF17862 AAA+ lid domain IC778_15400 PF00004 ATPase family associated with various cellular activities (AAA) IC778_15400 PF01434 Peptidase family M41 IC778_15400 PF06480 FtsH Extracellular IC778_15405 PF01728 FtsJ-like methyltransferase IC778_15410 PF01985 CRS1 / YhbY (CRM) domain IC778_15425 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IC778_15425 PF00117 Glutamine amidotransferase class-I IC778_15430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_15430 PF02142 MGS-like domain IC778_15430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IC778_15435 PF03449 Transcription elongation factor, N-terminal IC778_15435 PF01272 Transcription elongation factor, GreA/GreB, C-term IC778_15440 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_15445 PF00582 Universal stress protein family IC778_15460 PF00999 Sodium/hydrogen exchanger family IC778_15465 PF04228 Putative neutral zinc metallopeptidase IC778_15470 PF05661 Protein of unknown function (DUF808) IC778_15475 PF00579 tRNA synthetases class I (W and Y) IC778_15480 PF00549 CoA-ligase IC778_15480 PF02629 CoA binding domain IC778_15485 PF08442 ATP-grasp domain IC778_15485 PF00549 CoA-ligase IC778_15490 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_15490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IC778_15495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IC778_15495 PF00364 Biotin-requiring enzyme IC778_15495 PF02817 e3 binding domain IC778_15500 PF00676 Dehydrogenase E1 component IC778_15500 PF16078 2-oxoglutarate dehydrogenase N-terminus IC778_15500 PF02779 Transketolase, pyrimidine binding domain IC778_15500 PF16870 2-oxoglutarate dehydrogenase C-terminal IC778_15515 PF13085 2Fe-2S iron-sulfur cluster binding domain IC778_15520 PF00890 FAD binding domain IC778_15520 PF02910 Fumarate reductase flavoprotein C-term IC778_15525 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IC778_15530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IC778_15535 PF00285 Citrate synthase, C-terminal domain IC778_15545 PF17773 UPF0176 acylphosphatase like domain IC778_15545 PF00581 Rhodanese-like domain IC778_15560 PF04539 Sigma-70 region 3 IC778_15560 PF04542 Sigma-70 region 2 IC778_15560 PF04546 Sigma-70, non-essential region IC778_15560 PF03979 Sigma-70 factor, region 1.1 IC778_15560 PF04545 Sigma-70, region 4 IC778_15560 PF00140 Sigma-70 factor, region 1.2 IC778_15565 PF04359 Protein of unknown function (DUF493) IC778_15570 PF03099 Biotin/lipoate A/B protein ligase family IC778_15580 PF00465 Iron-containing alcohol dehydrogenase IC778_15585 PF13520 Amino acid permease IC778_15590 PF03358 NADPH-dependent FMN reductase IC778_15595 PF01638 HxlR-like helix-turn-helix IC778_15600 PF00588 SpoU rRNA Methylase family IC778_15605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IC778_15605 PF14824 Sirohaem biosynthesis protein central IC778_15605 PF10414 Sirohaem synthase dimerisation region IC778_15610 PF02403 Seryl-tRNA synthetase N-terminal domain IC778_15610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IC778_15620 PF03548 Outer membrane lipoprotein carrier protein LolA IC778_15625 PF01016 Ribosomal L27 protein IC778_15630 PF00829 Ribosomal prokaryotic L21 protein IC778_15640 PF00348 Polyprenyl synthetase IC778_15650 PF01569 PAP2 superfamily IC778_15655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_15655 PF00529 HlyD membrane-fusion protein of T1SS IC778_15660 PF00873 AcrB/AcrD/AcrF family IC778_15665 PF02321 Outer membrane efflux protein IC778_15670 PF01906 Putative heavy-metal-binding IC778_15675 PF01906 Putative heavy-metal-binding IC778_15695 PF08264 Anticodon-binding domain of tRNA IC778_15695 PF00133 tRNA synthetases class I (I, L, M and V) IC778_15695 PF10458 Valyl tRNA synthetase tRNA binding arm IC778_15705 PF10458 Valyl tRNA synthetase tRNA binding arm IC778_15705 PF00133 tRNA synthetases class I (I, L, M and V) IC778_15705 PF08264 Anticodon-binding domain of tRNA IC778_15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_15725 PF03466 LysR substrate binding domain IC778_15730 PF00909 Ammonium Transporter Family IC778_15740 PF08521 Two-component sensor kinase N-terminal IC778_15740 PF00512 His Kinase A (phospho-acceptor) domain IC778_15740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_15745 PF00486 Transcriptional regulatory protein, C terminal IC778_15745 PF00072 Response regulator receiver domain IC778_15750 PF00884 Sulfatase IC778_15750 PF08019 Phosphoethanolamine transferase EptA/EptB IC778_15770 PF01734 Patatin-like phospholipase IC778_15780 PF01145 SPFH domain / Band 7 family IC778_15785 PF04237 YjbR IC778_15790 PF00348 Polyprenyl synthetase IC778_15795 PF04303 PrpF protein IC778_15800 PF00324 Amino acid permease IC778_15805 PF00293 NUDIX domain IC778_15805 PF09297 NADH pyrophosphatase zinc ribbon domain IC778_15810 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IC778_15830 PF01965 DJ-1/PfpI family IC778_15835 PF08659 KR domain IC778_15835 PF00698 Acyl transferase domain IC778_15835 PF08240 Alcohol dehydrogenase GroES-like domain IC778_15835 PF08990 Erythronolide synthase docking IC778_15835 PF14765 Polyketide synthase dehydratase IC778_15835 PF02801 Beta-ketoacyl synthase, C-terminal domain IC778_15835 PF09277 Erythronolide synthase, docking IC778_15835 PF00550 Phosphopantetheine attachment site IC778_15835 PF00109 Beta-ketoacyl synthase, N-terminal domain IC778_15835 PF16197 Ketoacyl-synthetase C-terminal extension IC778_15840 PF12833 Helix-turn-helix domain IC778_15840 PF06719 AraC-type transcriptional regulator N-terminus IC778_15845 PF02673 Bacitracin resistance protein BacA IC778_15865 PF02525 Flavodoxin-like fold IC778_15880 PF01507 Phosphoadenosine phosphosulfate reductase family IC778_15885 PF06974 Protein of unknown function (DUF1298) IC778_15885 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain IC778_15895 PF10150 Ribonuclease E/G family IC778_15895 PF00575 S1 RNA binding domain IC778_15900 PF02545 Maf-like protein IC778_15905 PF04093 rod shape-determining protein MreD IC778_15910 PF04085 rod shape-determining protein MreC IC778_15920 PF02686 Glu-tRNAGln amidotransferase C subunit IC778_15925 PF01425 Amidase IC778_15930 PF02637 GatB domain IC778_15930 PF02934 GatB/GatE catalytic domain IC778_15960 PF05992 SbmA/BacA-like family IC778_15965 PF00291 Pyridoxal-phosphate dependent enzyme IC778_15965 PF13291 ACT domain IC778_15970 PF01734 Patatin-like phospholipase IC778_15975 PF01235 Sodium:alanine symporter family IC778_15990 PF00881 Nitroreductase family IC778_15995 PF07690 Major Facilitator Superfamily IC778_16000 PF12805 FUSC-like inner membrane protein yccS IC778_16010 PF00175 Oxidoreductase NAD-binding domain IC778_16010 PF00667 FAD binding domain IC778_16010 PF00258 Flavodoxin IC778_16050 PF17969 L,D-transpeptidase C-terminal domain IC778_16050 PF03734 L,D-transpeptidase catalytic domain IC778_16055 PF04304 Protein of unknown function (DUF454) IC778_16070 PF01546 Peptidase family M20/M25/M40 IC778_16070 PF07687 Peptidase dimerisation domain IC778_16080 PF06969 HemN C-terminal domain IC778_16080 PF04055 Radical SAM superfamily IC778_16090 PF00072 Response regulator receiver domain IC778_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_16090 PF01584 CheW-like domain IC778_16090 PF01627 Hpt domain IC778_16095 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IC778_16095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IC778_16100 PF01584 CheW-like domain IC778_16105 PF00072 Response regulator receiver domain IC778_16110 PF00072 Response regulator receiver domain IC778_16125 PF00873 AcrB/AcrD/AcrF family IC778_16130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IC778_16130 PF04073 Aminoacyl-tRNA editing domain IC778_16130 PF03129 Anticodon binding domain IC778_16135 PF07411 Domain of unknown function (DUF1508) IC778_16140 PF08274 PhnA Zinc-Ribbon IC778_16140 PF03831 PhnA domain IC778_16145 PF04343 Protein of unknown function, DUF488 IC778_16150 PF12697 Alpha/beta hydrolase family IC778_16155 PF00881 Nitroreductase family IC778_16160 PF00296 Luciferase-like monooxygenase IC778_16165 PF00857 Isochorismatase family IC778_16170 PF01042 Endoribonuclease L-PSP IC778_16175 PF01613 Flavin reductase like domain IC778_16180 PF00860 Permease family IC778_16185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IC778_16185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IC778_16195 PF01571 Aminomethyltransferase folate-binding domain IC778_16200 PF13098 Thioredoxin-like domain IC778_16200 PF10411 Disulfide bond isomerase protein N-terminus IC778_16210 PF03547 Membrane transport protein IC778_16215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_16220 PF00593 TonB dependent receptor IC778_16220 PF07715 TonB-dependent Receptor Plug Domain IC778_16225 PF02245 Methylpurine-DNA glycosylase (MPG) IC778_16230 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IC778_16230 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IC778_16230 PF06827 Zinc finger found in FPG and IleRS IC778_16245 PF01741 Large-conductance mechanosensitive channel, MscL IC778_16250 PF00679 Elongation factor G C-terminus IC778_16250 PF00009 Elongation factor Tu GTP binding domain IC778_16250 PF03144 Elongation factor Tu domain 2 IC778_16255 PF00860 Permease family IC778_16260 PF08468 Methyltransferase small domain N-terminal IC778_16260 PF05175 Methyltransferase small domain IC778_16265 PF00324 Amino acid permease IC778_16270 PF01139 tRNA-splicing ligase RtcB IC778_16280 PF00691 OmpA family IC778_16280 PF13505 Outer membrane protein beta-barrel domain IC778_16285 PF07963 Prokaryotic N-terminal methylation motif IC778_16285 PF00114 Pilin (bacterial filament) IC778_16290 PF00108 Thiolase, N-terminal domain IC778_16290 PF02803 Thiolase, C-terminal domain IC778_16305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IC778_16305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IC778_16310 PF01011 PQQ enzyme repeat IC778_16315 PF04966 Carbohydrate-selective porin, OprB family IC778_16320 PF02515 CoA-transferase family III IC778_16325 PF02311 AraC-like ligand binding domain IC778_16325 PF12833 Helix-turn-helix domain IC778_16330 PF02803 Thiolase, C-terminal domain IC778_16330 PF00108 Thiolase, N-terminal domain IC778_16335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_16335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_16335 PF00378 Enoyl-CoA hydratase/isomerase IC778_16350 PF13673 Acetyltransferase (GNAT) domain IC778_16360 PF03006 Haemolysin-III related IC778_16365 PF07690 Major Facilitator Superfamily IC778_16365 PF00083 Sugar (and other) transporter IC778_16375 PF07516 SecA Wing and Scaffold domain IC778_16375 PF01043 SecA preprotein cross-linking domain IC778_16375 PF07517 SecA DEAD-like domain IC778_16375 PF02810 SEC-C motif IC778_16380 PF00578 AhpC/TSA family IC778_16380 PF10417 C-terminal domain of 1-Cys peroxiredoxin IC778_16385 PF00753 Metallo-beta-lactamase superfamily IC778_16400 PF02875 Mur ligase family, glutamate ligase domain IC778_16400 PF08245 Mur ligase middle domain IC778_16405 PF01039 Carboxyl transferase domain IC778_16410 PF00290 Tryptophan synthase alpha chain IC778_16440 PF00291 Pyridoxal-phosphate dependent enzyme IC778_16445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IC778_16450 PF07715 TonB-dependent Receptor Plug Domain IC778_16450 PF00593 TonB dependent receptor IC778_16455 PF01923 Cobalamin adenosyltransferase IC778_16475 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IC778_16485 PF00486 Transcriptional regulatory protein, C terminal IC778_16485 PF00072 Response regulator receiver domain IC778_16490 PF00672 HAMP domain IC778_16490 PF00512 His Kinase A (phospho-acceptor) domain IC778_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_16500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_16500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_16500 PF12806 Acetyl-CoA dehydrogenase C-terminal like IC778_16500 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_16505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_16505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_16505 PF12806 Acetyl-CoA dehydrogenase C-terminal like IC778_16505 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_16510 PF06146 Phosphate-starvation-inducible E IC778_16530 PF00593 TonB dependent receptor IC778_16530 PF07715 TonB-dependent Receptor Plug Domain IC778_16540 PF02938 GAD domain IC778_16540 PF00152 tRNA synthetases class II (D, K and N) IC778_16540 PF01336 OB-fold nucleic acid binding domain IC778_16545 PF11380 Stealth protein CR2, conserved region 2 IC778_16545 PF17103 Stealth protein CR4, conserved region 4 IC778_16545 PF17101 Stealth protein CR1, conserved region 1 IC778_16560 PF00665 Integrase core domain IC778_16560 PF13936 Helix-turn-helix domain IC778_16585 PF00534 Glycosyl transferases group 1 IC778_16585 PF13439 Glycosyltransferase Family 4 IC778_16590 PF00535 Glycosyl transferase family 2 IC778_16595 PF01522 Polysaccharide deacetylase IC778_16605 PF00884 Sulfatase IC778_16615 PF01063 Amino-transferase class IV IC778_16620 PF08335 GlnD PII-uridylyltransferase IC778_16620 PF03710 Glutamate-ammonia ligase adenylyltransferase IC778_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_16625 PF00512 His Kinase A (phospho-acceptor) domain IC778_16625 PF09308 LuxQ, periplasmic IC778_16625 PF00072 Response regulator receiver domain IC778_16630 PF02463 RecF/RecN/SMC N terminal domain IC778_16645 PF02547 Queuosine biosynthesis protein IC778_16660 PF01702 Queuine tRNA-ribosyltransferase IC778_16665 PF02699 Preprotein translocase subunit IC778_16670 PF02355 Protein export membrane protein IC778_16670 PF13721 SecD export protein N-terminal TM region IC778_16670 PF07549 SecD/SecF GG Motif IC778_16675 PF07549 SecD/SecF GG Motif IC778_16675 PF02355 Protein export membrane protein IC778_16680 PF02441 Flavoprotein IC778_16680 PF04127 DNA / pantothenate metabolism flavoprotein IC778_16685 PF04002 RadC-like JAB domain IC778_16690 PF01062 Bestrophin, RFP-TM, chloride channel IC778_16695 PF02811 PHP domain IC778_16700 PF04279 Intracellular septation protein A IC778_16705 PF03795 YCII-related domain IC778_16715 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IC778_16715 PF01266 FAD dependent oxidoreductase IC778_16725 PF04461 Protein of unknown function (DUF520) IC778_16740 PF03061 Thioesterase superfamily IC778_16745 PF00085 Thioredoxin IC778_16750 PF00561 alpha/beta hydrolase fold IC778_16755 PF04273 Putative phosphatase (DUF442) IC778_16755 PF00753 Metallo-beta-lactamase superfamily IC778_16765 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_16765 PF00403 Heavy-metal-associated domain IC778_16765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IC778_16800 PF00990 Diguanylate cyclase, GGDEF domain IC778_16800 PF17152 Periplasmic sensor domain IC778_16805 PF01389 OmpA-like transmembrane domain IC778_16805 PF00691 OmpA family IC778_16810 PF00149 Calcineurin-like phosphoesterase IC778_16810 PF10518 TAT (twin-arginine translocation) pathway signal sequence IC778_16815 PF13091 PLD-like domain IC778_16825 PF01926 50S ribosome-binding GTPase IC778_16825 PF13167 GTP-binding GTPase N-terminal IC778_16825 PF16360 GTP-binding GTPase Middle Region IC778_16845 PF00149 Calcineurin-like phosphoesterase IC778_16850 PF00398 Ribosomal RNA adenine dimethylase IC778_16855 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IC778_16860 PF00572 Ribosomal protein L13 IC778_16865 PF00380 Ribosomal protein S9/S16 IC778_16870 PF13417 Glutathione S-transferase, N-terminal domain IC778_16870 PF00043 Glutathione S-transferase, C-terminal domain IC778_16875 PF04386 Stringent starvation protein B IC778_16905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IC778_16905 PF00289 Biotin carboxylase, N-terminal domain IC778_16905 PF02785 Biotin carboxylase C-terminal domain IC778_16905 PF00364 Biotin-requiring enzyme IC778_16910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IC778_16910 PF00378 Enoyl-CoA hydratase/isomerase IC778_16910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IC778_16915 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_16915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_16915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_16920 PF01039 Carboxyl transferase domain IC778_16935 PF17932 Tetracyclin repressor-like, C-terminal domain IC778_16935 PF00440 Bacterial regulatory proteins, tetR family IC778_16940 PF13302 Acetyltransferase (GNAT) domain IC778_17005 PF01066 CDP-alcohol phosphatidyltransferase IC778_17010 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IC778_17030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IC778_17030 PF00056 lactate/malate dehydrogenase, NAD binding domain IC778_17040 PF01464 Transglycosylase SLT domain IC778_17040 PF10145 Phage-related minor tail protein IC778_17040 PF01551 Peptidase family M23 IC778_17045 PF01938 TRAM domain IC778_17045 PF04055 Radical SAM superfamily IC778_17045 PF00919 Uncharacterized protein family UPF0004 IC778_17050 PF02562 PhoH-like protein IC778_17055 PF02130 Uncharacterized protein family UPF0054 IC778_17080 PF03358 NADPH-dependent FMN reductase IC778_17085 PF03631 Virulence factor BrkB IC778_17095 PF12833 Helix-turn-helix domain IC778_17100 PF01557 Fumarylacetoacetate (FAA) hydrolase family IC778_17145 PF08461 Ribonuclease R winged-helix domain IC778_17145 PF08206 Ribonuclease B OB domain IC778_17145 PF00773 RNB domain IC778_17145 PF00575 S1 RNA binding domain IC778_17145 PF17876 Cold shock domain IC778_17150 PF01432 Peptidase family M3 IC778_17155 PF09526 Probable metal-binding protein (DUF2387) IC778_17185 PF03937 Flavinator of succinate dehydrogenase IC778_17190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_17190 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_17190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_17195 PF00743 Flavin-binding monooxygenase-like IC778_17200 PF01196 Ribosomal protein L17 IC778_17205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IC778_17205 PF01000 RNA polymerase Rpb3/RpoA insert domain IC778_17205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IC778_17210 PF00163 Ribosomal protein S4/S9 N-terminal domain IC778_17210 PF01479 S4 domain IC778_17215 PF00411 Ribosomal protein S11 IC778_17220 PF00416 Ribosomal protein S13/S18 IC778_17225 PF00444 Ribosomal protein L36 IC778_17230 PF00344 SecY translocase IC778_17235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IC778_17240 PF00327 Ribosomal protein L30p/L7e IC778_17245 PF03719 Ribosomal protein S5, C-terminal domain IC778_17245 PF00333 Ribosomal protein S5, N-terminal domain IC778_17250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IC778_17255 PF00347 Ribosomal protein L6 IC778_17260 PF00410 Ribosomal protein S8 IC778_17265 PF00253 Ribosomal protein S14p/S29e IC778_17270 PF00673 ribosomal L5P family C-terminus IC778_17270 PF00281 Ribosomal protein L5 IC778_17275 PF00467 KOW motif IC778_17275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IC778_17280 PF00238 Ribosomal protein L14p/L23e IC778_17285 PF00366 Ribosomal protein S17 IC778_17290 PF00831 Ribosomal L29 protein IC778_17295 PF00252 Ribosomal protein L16p/L10e IC778_17300 PF07650 KH domain IC778_17300 PF00189 Ribosomal protein S3, C-terminal domain IC778_17305 PF00237 Ribosomal protein L22p/L17e IC778_17310 PF00203 Ribosomal protein S19 IC778_17315 PF03947 Ribosomal Proteins L2, C-terminal domain IC778_17315 PF00181 Ribosomal Proteins L2, RNA binding domain IC778_17320 PF00276 Ribosomal protein L23 IC778_17325 PF00573 Ribosomal protein L4/L1 family IC778_17330 PF00297 Ribosomal protein L3 IC778_17335 PF00338 Ribosomal protein S10p/S20e IC778_17340 PF00117 Glutamine amidotransferase class-I IC778_17345 PF01053 Cys/Met metabolism PLP-dependent enzyme IC778_17350 PF05872 Bacterial protein of unknown function (DUF853) IC778_17355 PF00175 Oxidoreductase NAD-binding domain IC778_17355 PF00042 Globin IC778_17355 PF00970 Oxidoreductase FAD-binding domain IC778_17360 PF02082 Transcriptional regulator IC778_17365 PF01926 50S ribosome-binding GTPase IC778_17375 PF00375 Sodium:dicarboxylate symporter family IC778_17385 PF01553 Acyltransferase IC778_17400 PF17191 RecG wedge domain IC778_17400 PF00270 DEAD/DEAH box helicase IC778_17400 PF00271 Helicase conserved C-terminal domain IC778_17405 PF00156 Phosphoribosyl transferase domain IC778_17410 PF00293 NUDIX domain IC778_17415 PF03641 Possible lysine decarboxylase IC778_17420 PF01544 CorA-like Mg2+ transporter protein IC778_17430 PF05494 MlaC protein IC778_17440 PF02405 Permease MlaE IC778_17445 PF00005 ABC transporter IC778_17450 PF00270 DEAD/DEAH box helicase IC778_17450 PF00271 Helicase conserved C-terminal domain IC778_17455 PF00459 Inositol monophosphatase family IC778_17460 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IC778_17460 PF02779 Transketolase, pyrimidine binding domain IC778_17460 PF02780 Transketolase, C-terminal domain IC778_17465 PF00925 GTP cyclohydrolase II IC778_17470 PF01218 Coproporphyrinogen III oxidase IC778_17475 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IC778_17475 PF08501 Shikimate dehydrogenase substrate binding domain IC778_17475 PF01488 Shikimate / quinate 5-dehydrogenase IC778_17485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IC778_17485 PF12806 Acetyl-CoA dehydrogenase C-terminal like IC778_17485 PF02770 Acyl-CoA dehydrogenase, middle domain IC778_17485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IC778_17495 PF04024 PspC domain IC778_17500 PF00571 CBS domain IC778_17500 PF01743 Poly A polymerase head domain IC778_17525 PF02091 Glycyl-tRNA synthetase alpha subunit IC778_17530 PF05746 DALR anticodon binding domain IC778_17530 PF02092 Glycyl-tRNA synthetase beta subunit IC778_17540 PF00892 EamA-like transporter family IC778_17545 PF03466 LysR substrate binding domain IC778_17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_17550 PF01177 Asp/Glu/Hydantoin racemase IC778_17555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_17555 PF03466 LysR substrate binding domain IC778_17570 PF00082 Subtilase family IC778_17570 PF05922 Peptidase inhibitor I9 IC778_17585 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IC778_17590 PF04996 Succinylarginine dihydrolase IC778_17595 PF00171 Aldehyde dehydrogenase family IC778_17600 PF04958 Arginine N-succinyltransferase beta subunit IC778_17605 PF00202 Aminotransferase class-III IC778_17610 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IC778_17610 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IC778_17615 PF00324 Amino acid permease IC778_17620 PF00665 Integrase core domain IC778_17620 PF13936 Helix-turn-helix domain IC778_17630 PF08241 Methyltransferase domain IC778_17650 PF13614 AAA domain IC778_17655 PF01594 AI-2E family transporter IC778_17660 PF00080 Copper/zinc superoxide dismutase (SODC) IC778_17665 PF12805 FUSC-like inner membrane protein yccS IC778_17670 PF07690 Major Facilitator Superfamily IC778_17680 PF02525 Flavodoxin-like fold IC778_17685 PF03992 Antibiotic biosynthesis monooxygenase IC778_17695 PF02913 FAD linked oxidases, C-terminal domain IC778_17695 PF01565 FAD binding domain IC778_17700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IC778_17700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IC778_17705 PF00892 EamA-like transporter family IC778_17710 PF00892 EamA-like transporter family IC778_17720 PF01925 Sulfite exporter TauE/SafE IC778_17725 PF16198 tRNA pseudouridylate synthase B C-terminal domain IC778_17725 PF01509 TruB family pseudouridylate synthase (N terminal domain) IC778_17725 PF09157 Pseudouridine synthase II TruB, C-terminal IC778_17730 PF03280 Proteobacterial lipase chaperone protein IC778_17735 PF00561 alpha/beta hydrolase fold IC778_17740 PF01245 Ribosomal protein L19 IC778_17745 PF01746 tRNA (Guanine-1)-methyltransferase IC778_17750 PF01782 RimM N-terminal domain IC778_17750 PF05239 PRC-barrel domain IC778_17755 PF00886 Ribosomal protein S16 IC778_17760 PF07963 Prokaryotic N-terminal methylation motif IC778_17760 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor IC778_17765 PF07963 Prokaryotic N-terminal methylation motif IC778_17765 PF00114 Pilin (bacterial filament) IC778_17790 PF00114 Pilin (bacterial filament) IC778_17790 PF07963 Prokaryotic N-terminal methylation motif IC778_17800 PF02401 LytB protein IC778_17805 PF00625 Guanylate kinase IC778_17810 PF01192 RNA polymerase Rpb6 IC778_17820 PF13291 ACT domain IC778_17820 PF04607 Region found in RelA / SpoT proteins IC778_17820 PF02824 TGS domain IC778_17825 PF01042 Endoribonuclease L-PSP IC778_17830 PF04324 BFD-like [2Fe-2S] binding domain IC778_17835 PF00210 Ferritin-like domain IC778_17840 PF15864 Protein glycosylation ligase IC778_17840 PF04932 O-Antigen ligase IC778_17840 PF11846 Virulence factor membrane-bound polymerase, C-terminal IC778_17850 PF07963 Prokaryotic N-terminal methylation motif IC778_17850 PF00114 Pilin (bacterial filament) IC778_17860 PF04536 TPM domain IC778_17865 PF04011 LemA family IC778_17875 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IC778_17875 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_17880 PF00310 Glutamine amidotransferases class-II IC778_17880 PF04898 Glutamate synthase central domain IC778_17880 PF01645 Conserved region in glutamate synthase IC778_17880 PF01493 GXGXG motif IC778_17890 PF01761 3-dehydroquinate synthase IC778_17895 PF01202 Shikimate kinase IC778_17900 PF11741 AMIN domain IC778_17900 PF00263 Bacterial type II and III secretion system protein IC778_17900 PF03958 Bacterial type II/III secretion system short domain IC778_17900 PF07660 Secretin and TonB N terminus short domain IC778_17910 PF04350 Pilus assembly protein, PilO IC778_17915 PF05137 Fimbrial assembly protein (PilN) IC778_17920 PF11104 Type IV pilus assembly protein PilM; IC778_17925 PF00912 Transglycosylase IC778_17925 PF00905 Penicillin binding protein transpeptidase domain IC778_17925 PF17092 Penicillin-binding protein OB-like domain IC778_17930 PF13847 Methyltransferase domain IC778_17945 PF02875 Mur ligase family, glutamate ligase domain IC778_17945 PF08245 Mur ligase middle domain IC778_17945 PF01225 Mur ligase family, catalytic domain IC778_17950 PF01225 Mur ligase family, catalytic domain IC778_17950 PF02875 Mur ligase family, glutamate ligase domain IC778_17950 PF08245 Mur ligase middle domain IC778_17965 PF01795 MraW methylase family IC778_17980 PF00749 tRNA synthetases class I (E and Q), catalytic domain IC778_17995 PF00324 Amino acid permease IC778_18025 PF01545 Cation efflux family IC778_18030 PF00873 AcrB/AcrD/AcrF family IC778_18035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_18035 PF00529 HlyD membrane-fusion protein of T1SS IC778_18055 PF04191 Phospholipid methyltransferase IC778_18070 PF12848 ABC transporter IC778_18070 PF00005 ABC transporter IC778_18075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IC778_18075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IC778_18075 PF00205 Thiamine pyrophosphate enzyme, central domain IC778_18080 PF01053 Cys/Met metabolism PLP-dependent enzyme IC778_18085 PF00106 short chain dehydrogenase IC778_18090 PF00916 Sulfate permease family IC778_18090 PF01740 STAS domain IC778_18100 PF17674 HHH domain IC778_18100 PF00575 S1 RNA binding domain IC778_18100 PF09371 Tex-like protein N-terminal domain IC778_18100 PF16921 Tex protein YqgF-like domain IC778_18105 PF00486 Transcriptional regulatory protein, C terminal IC778_18105 PF00072 Response regulator receiver domain IC778_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_18110 PF00512 His Kinase A (phospho-acceptor) domain IC778_18110 PF00672 HAMP domain IC778_18120 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IC778_18120 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IC778_18125 PF00583 Acetyltransferase (GNAT) family IC778_18145 PF00475 Imidazoleglycerol-phosphate dehydratase IC778_18150 PF00117 Glutamine amidotransferase class-I IC778_18165 PF00977 Histidine biosynthesis protein IC778_18195 PF01636 Phosphotransferase enzyme family IC778_18200 PF00977 Histidine biosynthesis protein IC778_18215 PF00230 Major intrinsic protein IC778_18240 PF02705 K+ potassium transporter IC778_18260 PF02525 Flavodoxin-like fold IC778_18265 PF01638 HxlR-like helix-turn-helix IC778_18285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IC778_18295 PF13936 Helix-turn-helix domain IC778_18295 PF00665 Integrase core domain IC778_18300 PF01638 HxlR-like helix-turn-helix IC778_18315 PF02311 AraC-like ligand binding domain IC778_18315 PF12833 Helix-turn-helix domain IC778_18320 PF00248 Aldo/keto reductase family IC778_18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_18340 PF03466 LysR substrate binding domain IC778_18345 PF07690 Major Facilitator Superfamily IC778_18370 PF01593 Flavin containing amine oxidoreductase IC778_18375 PF02678 Pirin IC778_18375 PF05726 Pirin C-terminal cupin domain IC778_18380 PF00857 Isochorismatase family IC778_18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_18390 PF00171 Aldehyde dehydrogenase family IC778_18395 PF00202 Aminotransferase class-III IC778_18400 PF00392 Bacterial regulatory proteins, gntR family IC778_18400 PF00155 Aminotransferase class I and II IC778_18405 PF00324 Amino acid permease IC778_18415 PF03591 AzlC protein IC778_18435 PF13936 Helix-turn-helix domain IC778_18435 PF00665 Integrase core domain IC778_18470 PF00436 Single-strand binding protein family IC778_18475 PF07690 Major Facilitator Superfamily IC778_18485 PF03070 TENA/THI-4/PQQC family IC778_18485 PF02581 Thiamine monophosphate synthase IC778_18485 PF08543 Phosphomethylpyrimidine kinase IC778_18490 PF09278 MerR, DNA binding IC778_18490 PF00376 MerR family regulatory protein IC778_18495 PF00106 short chain dehydrogenase IC778_18500 PF06942 GlpM protein IC778_18510 PF08240 Alcohol dehydrogenase GroES-like domain IC778_18510 PF00107 Zinc-binding dehydrogenase IC778_18515 PF00440 Bacterial regulatory proteins, tetR family IC778_18515 PF16925 Tetracyclin repressor-like, C-terminal domain IC778_18520 PF17760 UvrA interaction domain IC778_18520 PF17755 UvrA DNA-binding domain IC778_18525 PF00990 Diguanylate cyclase, GGDEF domain IC778_18535 PF02028 BCCT, betaine/carnitine/choline family transporter IC778_18545 PF00474 Sodium:solute symporter family IC778_18550 PF04341 Protein of unknown function, DUF485 IC778_18555 PF00072 Response regulator receiver domain IC778_18555 PF01627 Hpt domain IC778_18555 PF00512 His Kinase A (phospho-acceptor) domain IC778_18555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_18555 PF00672 HAMP domain IC778_18565 PF00196 Bacterial regulatory proteins, luxR family IC778_18565 PF00072 Response regulator receiver domain IC778_18570 PF03358 NADPH-dependent FMN reductase IC778_18575 PF00296 Luciferase-like monooxygenase IC778_18580 PF01037 Lrp/AsnC ligand binding domain IC778_18585 PF00857 Isochorismatase family IC778_18590 PF00501 AMP-binding enzyme IC778_18590 PF13193 AMP-binding enzyme C-terminal domain IC778_18590 PF16177 Acetyl-coenzyme A synthetase N-terminus IC778_18600 PF05552 Conserved TM helix IC778_18600 PF00924 Mechanosensitive ion channel IC778_18605 PF04452 RNA methyltransferase IC778_18610 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IC778_18615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_18635 PF17768 RecJ OB domain IC778_18635 PF02272 DHHA1 domain IC778_18635 PF01368 DHH family IC778_18640 PF01243 Pyridoxamine 5'-phosphate oxidase IC778_18640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IC778_18645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IC778_18645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IC778_18645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IC778_18645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IC778_18650 PF00571 CBS domain IC778_18650 PF00478 IMP dehydrogenase / GMP reductase domain IC778_18655 PF03692 Putative zinc- or iron-chelating domain IC778_18660 PF00258 Flavodoxin IC778_18660 PF01613 Flavin reductase like domain IC778_18665 PF01169 Uncharacterized protein family UPF0016 IC778_18675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IC778_18675 PF00364 Biotin-requiring enzyme IC778_18675 PF02817 e3 binding domain IC778_18680 PF17831 Pyruvate dehydrogenase E1 component middle domain IC778_18680 PF00456 Transketolase, thiamine diphosphate binding domain IC778_18685 PF01551 Peptidase family M23 IC778_18695 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IC778_18700 PF00091 Tubulin/FtsZ family, GTPase domain IC778_18700 PF12327 FtsZ family, C-terminal domain IC778_18705 PF02491 SHS2 domain inserted in FTSA IC778_18710 PF08478 POTRA domain, FtsQ-type IC778_18710 PF03799 Cell division protein FtsQ IC778_18715 PF01820 D-ala D-ala ligase N-terminus IC778_18715 PF07478 D-ala D-ala ligase C-terminus IC778_18720 PF01225 Mur ligase family, catalytic domain IC778_18720 PF02875 Mur ligase family, glutamate ligase domain IC778_18720 PF08245 Mur ligase middle domain IC778_18725 PF03033 Glycosyltransferase family 28 N-terminal domain IC778_18725 PF04101 Glycosyltransferase family 28 C-terminal domain IC778_18730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IC778_18730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IC778_18740 PF07715 TonB-dependent Receptor Plug Domain IC778_18740 PF00593 TonB dependent receptor IC778_18750 PF00156 Phosphoribosyl transferase domain IC778_18755 PF03372 Endonuclease/Exonuclease/phosphatase family IC778_18760 PF03960 ArsC family IC778_18770 PF07859 alpha/beta hydrolase fold IC778_18775 PF00990 Diguanylate cyclase, GGDEF domain IC778_18775 PF17151 Periplasmic sensor domain IC778_18780 PF11412 Disulphide bond corrector protein DsbC IC778_18780 PF02683 Cytochrome C biogenesis protein transmembrane region IC778_18790 PF12796 Ankyrin repeats (3 copies) IC778_18790 PF07722 Peptidase C26 IC778_18810 PF00576 HIUase/Transthyretin family IC778_18825 PF01494 FAD binding domain IC778_18830 PF03561 Allantoicase repeat IC778_18835 PF04115 Ureidoglycolate lyase IC778_18840 PF00204 DNA gyrase B IC778_18840 PF00986 DNA gyrase B subunit, carboxyl terminus IC778_18840 PF01751 Toprim domain IC778_18840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_18845 PF05728 Uncharacterised protein family (UPF0227) IC778_18885 PF01476 LysM domain IC778_18885 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IC778_18890 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IC778_18890 PF13296 Putative type VI secretion system Rhs element Vgr IC778_18890 PF04717 Type VI secretion system, phage-baseplate injector IC778_18895 PF02600 Disulfide bond formation protein DsbB IC778_18900 PF04262 Glutamate-cysteine ligase IC778_18915 PF04286 Protein of unknown function (DUF445) IC778_18920 PF00155 Aminotransferase class I and II IC778_18925 PF01554 MatE IC778_18930 PF00106 short chain dehydrogenase IC778_18940 PF00486 Transcriptional regulatory protein, C terminal IC778_18940 PF00072 Response regulator receiver domain IC778_18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_18945 PF00512 His Kinase A (phospho-acceptor) domain IC778_18945 PF00989 PAS fold IC778_18945 PF11808 Phosphate regulon sensor protein PhoR IC778_18960 PF03069 Acetamidase/Formamidase family IC778_18965 PF02666 Phosphatidylserine decarboxylase IC778_18970 PF00581 Rhodanese-like domain IC778_18975 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IC778_18975 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IC778_18980 PF02580 D-Tyr-tRNA(Tyr) deacylase IC778_19005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IC778_19005 PF00925 GTP cyclohydrolase II IC778_19010 PF00885 6,7-dimethyl-8-ribityllumazine synthase IC778_19015 PF01029 NusB family IC778_19020 PF02769 AIR synthase related protein, C-terminal domain IC778_19020 PF00586 AIR synthase related protein, N-terminal domain IC778_19025 PF04608 Phosphatidylglycerophosphatase A IC778_19030 PF14602 Hexapeptide repeat of succinyl-transferase IC778_19030 PF00132 Bacterial transferase hexapeptide (six repeats) IC778_19030 PF12804 MobA-like NTP transferase domain IC778_19035 PF01380 SIS domain IC778_19065 PF01810 LysE type translocator IC778_19070 PF01177 Asp/Glu/Hydantoin racemase IC778_19075 PF13419 Haloacid dehalogenase-like hydrolase IC778_19085 PF00491 Arginase family IC778_19090 PF01979 Amidohydrolase family IC778_19095 PF00324 Amino acid permease IC778_19100 PF00221 Aromatic amino acid lyase IC778_19105 PF17391 Urocanase N-terminal domain IC778_19105 PF17392 Urocanase C-terminal domain IC778_19105 PF01175 Urocanase Rossmann-like domain IC778_19110 PF05962 HutD IC778_19115 PF07702 UTRA domain IC778_19115 PF00392 Bacterial regulatory proteins, gntR family IC778_19125 PF02492 CobW/HypB/UreG, nucleotide-binding domain IC778_19125 PF07683 Cobalamin synthesis protein cobW C-terminal domain IC778_19135 PF00324 Amino acid permease IC778_19145 PF02798 Glutathione S-transferase, N-terminal domain IC778_19145 PF14497 Glutathione S-transferase, C-terminal domain IC778_19150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IC778_19160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IC778_19165 PF04463 Protein of unknown function (DUF523) IC778_19170 PF01554 MatE IC778_19175 PF01758 Sodium Bile acid symporter family IC778_19180 PF00857 Isochorismatase family IC778_19185 PF00701 Dihydrodipicolinate synthetase family IC778_19195 PF01259 SAICAR synthetase IC778_19205 PF01226 Formate/nitrite transporter IC778_19210 PF00004 ATPase family associated with various cellular activities (AAA) IC778_19210 PF12002 MgsA AAA+ ATPase C terminal IC778_19210 PF16193 AAA C-terminal domain IC778_19215 PF07995 Glucose / Sorbosone dehydrogenase IC778_19220 PF03692 Putative zinc- or iron-chelating domain IC778_19225 PF07043 Protein of unknown function (DUF1328) IC778_19240 PF14815 NUDIX domain IC778_19240 PF00730 HhH-GPD superfamily base excision DNA repair protein IC778_19240 PF10576 Iron-sulfur binding domain of endonuclease III IC778_19240 PF00633 Helix-hairpin-helix motif IC778_19255 PF03352 Methyladenine glycosylase IC778_19260 PF00107 Zinc-binding dehydrogenase IC778_19260 PF08240 Alcohol dehydrogenase GroES-like domain IC778_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_19280 PF03466 LysR substrate binding domain IC778_19285 PF00248 Aldo/keto reductase family IC778_19290 PF07690 Major Facilitator Superfamily IC778_19300 PF01113 Dihydrodipicolinate reductase, N-terminus IC778_19300 PF05173 Dihydrodipicolinate reductase, C-terminus IC778_19310 PF00226 DnaJ domain IC778_19310 PF01556 DnaJ C terminal domain IC778_19310 PF00684 DnaJ central domain IC778_19320 PF00873 AcrB/AcrD/AcrF family IC778_19325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_19330 PF00440 Bacterial regulatory proteins, tetR family IC778_19330 PF08361 MAATS-type transcriptional repressor, C-terminal region IC778_19335 PF00311 Phosphoenolpyruvate carboxylase IC778_19340 PF00860 Permease family IC778_19345 PF03466 LysR substrate binding domain IC778_19345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_19360 PF00920 Dehydratase family IC778_19365 PF02911 Formyl transferase, C-terminal domain IC778_19365 PF00551 Formyl transferase IC778_19370 PF01189 16S rRNA methyltransferase RsmB/F IC778_19370 PF01029 NusB family IC778_19380 PF00209 Sodium:neurotransmitter symporter family IC778_19390 PF02798 Glutathione S-transferase, N-terminal domain IC778_19420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IC778_19425 PF07859 alpha/beta hydrolase fold IC778_19450 PF01025 GrpE IC778_19455 PF00012 Hsp70 protein IC778_19475 PF13406 Transglycosylase SLT domain IC778_19480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IC778_19480 PF02222 ATP-grasp domain IC778_19485 PF00731 AIR carboxylase IC778_19495 PF08245 Mur ligase middle domain IC778_19495 PF01225 Mur ligase family, catalytic domain IC778_19495 PF02875 Mur ligase family, glutamate ligase domain IC778_19505 PF01569 PAP2 superfamily IC778_19510 PF03741 Integral membrane protein TerC family IC778_19520 PF03738 Glutathionylspermidine synthase preATP-grasp IC778_19525 PF00355 Rieske [2Fe-2S] domain IC778_19530 PF01979 Amidohydrolase family IC778_19535 PF00156 Phosphoribosyl transferase domain IC778_19545 PF13098 Thioredoxin-like domain IC778_19545 PF10411 Disulfide bond isomerase protein N-terminus IC778_19550 PF02583 Metal-sensitive transcriptional repressor IC778_19555 PF01926 50S ribosome-binding GTPase IC778_19555 PF12631 MnmE helical domain IC778_19555 PF10396 GTP-binding protein TrmE N-terminus IC778_19560 PF14849 YidC periplasmic domain IC778_19560 PF02096 60Kd inner membrane protein IC778_19565 PF01809 Putative membrane protein insertion efficiency factor IC778_19570 PF00825 Ribonuclease P IC778_19575 PF00468 Ribosomal protein L34 IC778_19695 PF13737 Transposase DDE domain IC778_19755 PF01435 Peptidase family M48 IC778_19785 PF00665 Integrase core domain IC778_19795 PF13005 zinc-finger binding domain of transposase IS66 IC778_19795 PF13007 Transposase C of IS166 homeodomain IC778_19795 PF13817 IS66 C-terminal element IC778_19795 PF03050 Transposase IS66 family IC778_19820 PF00582 Universal stress protein family IC778_19825 PF01740 STAS domain IC778_19825 PF00916 Sulfate permease family IC778_19855 PF00589 Phage integrase family IC778_19855 PF02899 Phage integrase, N-terminal SAM-like domain IC778_19880 PF00665 Integrase core domain IC778_19895 PF00809 Pterin binding enzyme IC778_19910 PF07690 Major Facilitator Superfamily IC778_19915 PF02909 Tetracyclin repressor-like, C-terminal domain IC778_19915 PF00440 Bacterial regulatory proteins, tetR family IC778_19940 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IC778_19945 PF01636 Phosphotransferase enzyme family IC778_19960 PF01131 DNA topoisomerase IC778_19960 PF01396 Topoisomerase DNA binding C4 zinc finger IC778_19960 PF01751 Toprim domain IC778_20035 PF13936 Helix-turn-helix domain IC778_20035 PF00665 Integrase core domain IC778_20040 PF01636 Phosphotransferase enzyme family IC778_20045 PF13936 Helix-turn-helix domain IC778_20045 PF00665 Integrase core domain IC778_20145 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IC778_20145 PF00437 Type II/IV secretion system protein IC778_20195 PF13614 AAA domain IC778_20200 PF17762 HTH domain found in ParB protein IC778_20200 PF02195 ParB-like nuclease domain IC778_20210 PF11798 IMS family HHH motif IC778_20210 PF11799 impB/mucB/samB family C-terminal domain IC778_20210 PF00817 impB/mucB/samB family IC778_20210 PF13438 Domain of unknown function (DUF4113) IC778_20215 PF00717 Peptidase S24-like IC778_20255 PF00756 Putative esterase IC778_20260 PF08240 Alcohol dehydrogenase GroES-like domain IC778_20260 PF00107 Zinc-binding dehydrogenase IC778_20265 PF02583 Metal-sensitive transcriptional repressor IC778_20275 PF12833 Helix-turn-helix domain IC778_20275 PF01965 DJ-1/PfpI family IC778_20280 PF01321 Creatinase/Prolidase N-terminal domain IC778_20280 PF00557 Metallopeptidase family M24 IC778_20285 PF00083 Sugar (and other) transporter IC778_20285 PF08946 Osmosensory transporter coiled coil IC778_20290 PF00892 EamA-like transporter family IC778_20300 PF00109 Beta-ketoacyl synthase, N-terminal domain IC778_20300 PF02801 Beta-ketoacyl synthase, C-terminal domain IC778_20300 PF14765 Polyketide synthase dehydratase IC778_20300 PF00550 Phosphopantetheine attachment site IC778_20300 PF08240 Alcohol dehydrogenase GroES-like domain IC778_20300 PF00698 Acyl transferase domain IC778_20300 PF08659 KR domain IC778_20300 PF16197 Ketoacyl-synthetase C-terminal extension IC778_20305 PF00107 Zinc-binding dehydrogenase IC778_20305 PF08240 Alcohol dehydrogenase GroES-like domain IC778_20310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IC778_20310 PF03466 LysR substrate binding domain IC778_20315 PF00872 Transposase, Mutator family IC778_20330 PF00916 Sulfate permease family IC778_20330 PF01740 STAS domain IC778_20335 PF05973 Phage derived protein Gp49-like (DUF891) IC778_20370 PF05973 Phage derived protein Gp49-like (DUF891) IC778_20430 PF02661 Fic/DOC family IC778_20470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IC778_20485 PF00563 EAL domain IC778_20485 PF11809 Domain of unknown function (DUF3330) IC778_20490 PF05052 MerE protein IC778_20495 PF13411 MerR HTH family regulatory protein IC778_20500 PF00403 Heavy-metal-associated domain IC778_20500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IC778_20500 PF07992 Pyridine nucleotide-disulphide oxidoreductase IC778_20505 PF03203 MerC mercury resistance protein IC778_20510 PF00403 Heavy-metal-associated domain IC778_20515 PF02411 MerT mercuric transport protein IC778_20520 PF09278 MerR, DNA binding IC778_20520 PF00376 MerR family regulatory protein IC778_20525 PF13610 DDE domain IC778_20535 PF13411 MerR HTH family regulatory protein IC778_20550 PF07670 Nucleoside recognition IC778_20550 PF07664 Ferrous iron transport protein B C terminus IC778_20550 PF02421 Ferrous iron transport protein B IC778_20560 PF00873 AcrB/AcrD/AcrF family IC778_20565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IC778_20585 PF00394 Multicopper oxidase IC778_20585 PF07732 Multicopper oxidase IC778_20585 PF07731 Multicopper oxidase IC778_20595 PF00486 Transcriptional regulatory protein, C terminal IC778_20595 PF00072 Response regulator receiver domain IC778_20600 PF00512 His Kinase A (phospho-acceptor) domain IC778_20600 PF00672 HAMP domain IC778_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IC778_20655 PF00403 Heavy-metal-associated domain IC778_20665 PF02583 Metal-sensitive transcriptional repressor IC778_20675 PF13610 DDE domain IC778_20700 PF00580 UvrD/REP helicase N-terminal domain IC778_20700 PF13361 UvrD-like helicase C-terminal domain IC778_20720 PF12462 DNA helicase IV / RNA helicase N terminal IC778_20720 PF00580 UvrD/REP helicase N-terminal domain IC778_20720 PF13361 UvrD-like helicase C-terminal domain IC778_20730 PF13737 Transposase DDE domain IC778_20765 PF00589 Phage integrase family IC778_20765 PF13356 Arm DNA-binding domain IC778_20770 PF04151 Bacterial pre-peptidase C-terminal domain IC778_20780 PF00107 Zinc-binding dehydrogenase IC778_20780 PF16884 N-terminal domain of oxidoreductase IC778_20785 PF00440 Bacterial regulatory proteins, tetR family IC778_20785 PF16925 Tetracyclin repressor-like, C-terminal domain IC778_20795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IC778_20825 PF06122 Conjugative relaxosome accessory transposon protein IC778_20840 PF06986 Type-1V conjugative transfer system mating pair stabilisation IC778_20850 PF06834 TraU protein IC778_20885 PF13098 Thioredoxin-like domain IC778_20885 PF10411 Disulfide bond isomerase protein N-terminus IC778_20920 PF01464 Transglycosylase SLT domain IC778_20935 PF00239 Resolvase, N terminal domain IC778_20935 PF02796 Helix-turn-helix domain of resolvase IC778_20975 PF08751 TrwC relaxase IC778_20975 PF18340 DNA relaxase TraI 2B/2B-like domain IC778_20975 PF07057 DNA helicase TraI IC778_20975 PF18272 single-stranded DNA binding TraI N-terminal subdomain IC778_21100 PF05816 Toxic anion resistance protein (TelA) IC778_21115 PF17762 HTH domain found in ParB protein IC778_21115 PF02195 ParB-like nuclease domain IC778_21120 PF13614 AAA domain IC778_21170 PF00816 H-NS histone family IC778_21185 PF00905 Penicillin binding protein transpeptidase domain IC778_21195 PF00565 Staphylococcal nuclease homologue IC778_21290 PF03432 Relaxase/Mobilisation nuclease domain IC778_21305 PF10706 Aminoglycoside-2''-adenylyltransferase IC778_21320 PF03432 Relaxase/Mobilisation nuclease domain