BEN76_00035	SM00650	Ribosomal RNA adenine dimethylases
BEN76_00060	SM00563	Phosphate acyltransferases
BEN76_00065	SM00155	Phospholipase D. Active site motifs.
BEN76_00120	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_00135	SM00564	beta-propeller repeat
BEN76_00165	SM00344	helix_turn_helix ASNC type
BEN76_00185	SM00387	Histidine kinase-like ATPases
BEN76_00185	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_00190	SM00448	cheY-homologous receiver domain
BEN76_00190	SM00862	Transcriptional regulatory protein, C terminal
BEN76_00210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_00210	SM00387	Histidine kinase-like ATPases
BEN76_00210	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_00215	SM00448	cheY-homologous receiver domain
BEN76_00215	SM00862	Transcriptional regulatory protein, C terminal
BEN76_00225	SM00095	Transthyretin
BEN76_00250	SM00244	prohibitin homologues
BEN76_00275	SM00448	cheY-homologous receiver domain
BEN76_00275	SM00862	Transcriptional regulatory protein, C terminal
BEN76_00280	SM00387	Histidine kinase-like ATPases
BEN76_00280	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_00335	SM00822	BEN76_00335
BEN76_00365	SM00014	Acid phosphatase homologues
BEN76_00465	SM00422	helix_turn_helix, mercury resistance
BEN76_00480	SM00450	Rhodanese Homology Domain
BEN76_00510	SM01400	BEN76_00510
BEN76_00545	SM00028	Tetratricopeptide repeats
BEN76_00555	SM00400	zinc finger
BEN76_00555	SM00493	BEN76_00555
BEN76_00565	SM00363	S4 RNA-binding domain
BEN76_00655	SM00861	Transketolase, pyrimidine binding domain
BEN76_00675	SM00881	CoA binding domain
BEN76_00725	SM00851	MGS-like domain
BEN76_00725	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BEN76_00730	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BEN76_00745	SM01103	BEN76_00745
BEN76_00755	SM00382	ATPases associated with a variety of cellular activities
BEN76_00815	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BEN76_00825	SM00883	Chaperonin 10 Kd subunit
BEN76_00845	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_00845	SM00924	MgtE intracellular N domain
BEN76_00950	SM00861	Transketolase, pyrimidine binding domain
BEN76_00955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_00955	SM00895	BEN76_00955
BEN76_01000	SM00671	Sel1-like repeats.
BEN76_01025	SM00829	Enoylreductase
BEN76_01100	SM00382	ATPases associated with a variety of cellular activities
BEN76_01100	SM01086	C-terminal, D2-small domain, of ClpB protein
BEN76_01165	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BEN76_01170	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_01190	SM00903	Flavin reductase like domain
BEN76_01200	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_01235	SM00978	BEN76_01235
BEN76_01240	SM00382	ATPases associated with a variety of cellular activities
BEN76_01285	SM00893	Electron transfer flavoprotein domain
BEN76_01290	SM00893	Electron transfer flavoprotein domain
BEN76_01295	SM00434	DNA Topoisomerase IV
BEN76_01345	SM00382	ATPases associated with a variety of cellular activities
BEN76_01350	SM00849	Metallo-beta-lactamase superfamily
BEN76_01465	SM00382	ATPases associated with a variety of cellular activities
BEN76_01470	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BEN76_01475	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BEN76_01480	SM01211	BEN76_01480
BEN76_01545	SM00382	ATPases associated with a variety of cellular activities
BEN76_01590	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BEN76_01595	SM01230	BEN76_01595
BEN76_01605	SM00838	Elongation factor G C-terminus
BEN76_01620	SM00358	Double-stranded RNA binding motif
BEN76_01620	SM00535	Ribonuclease III family
BEN76_01670	SM00267	diguanylate cyclase
BEN76_01685	SM00487	DEAD-like helicases superfamily
BEN76_01685	SM00490	helicase superfamily c-terminal domain
BEN76_01700	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BEN76_01720	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BEN76_01785	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_01975	SM00060	Fibronectin type 3 domain
BEN76_02025	SM01236	BEN76_02025
BEN76_02075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_02075	SM00895	BEN76_02075
BEN76_02090	SM00903	Flavin reductase like domain
BEN76_02140	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_02145	SM01230	BEN76_02145
BEN76_02185	SM00796	Allophanate hydrolase subunit 1
BEN76_02185	SM00797	Allophanate hydrolase subunit 2
BEN76_02190	SM00878	Biotin carboxylase C-terminal domain
BEN76_02205	SM00882	Coenzyme A transferase
BEN76_02210	SM00882	Coenzyme A transferase
BEN76_02235	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_02265	SM00387	Histidine kinase-like ATPases
BEN76_02265	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_02265	SM00448	cheY-homologous receiver domain
BEN76_02270	SM00421	helix_turn_helix, Lux Regulon
BEN76_02270	SM00448	cheY-homologous receiver domain
BEN76_02305	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BEN76_02310	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BEN76_02320	SM00463	Small MutS-related domain
BEN76_02345	SM01230	BEN76_02345
BEN76_02370	SM00849	Metallo-beta-lactamase superfamily
BEN76_02380	SM00382	ATPases associated with a variety of cellular activities
BEN76_02380	SM00930	BEN76_02380
BEN76_02390	SM01209	BEN76_02390
BEN76_02390	SM01210	BEN76_02390
BEN76_02395	SM00798	AICARFT/IMPCHase bienzyme
BEN76_02395	SM00851	MGS-like domain
BEN76_02425	SM01228	BEN76_02425
BEN76_02445	SM00460	Transglutaminase/protease-like homologues
BEN76_02455	SM01005	Alanine racemase, C-terminal domain
BEN76_02525	SM00052	Putative diguanylate phosphodiesterase
BEN76_02525	SM00267	diguanylate cyclase
BEN76_02540	SM00937	BEN76_02540
BEN76_02550	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_02555	SM00822	BEN76_02555
BEN76_02565	SM00903	Flavin reductase like domain
BEN76_02585	SM00905	Dihydroneopterin aldolase
BEN76_02640	SM00344	helix_turn_helix ASNC type
BEN76_02685	SM00363	S4 RNA-binding domain
BEN76_02710	SM00853	MutL C terminal dimerisation domain
BEN76_02710	SM01340	BEN76_02710
BEN76_02755	SM00470	ParB-like nuclease domain
BEN76_02760	SM00382	ATPases associated with a variety of cellular activities
BEN76_02820	SM00986	Uracil DNA glycosylase superfamily
BEN76_02820	SM00987	UreE urease accessory protein, C-terminal domain 
BEN76_02845	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_02850	SM00411	bacterial (prokaryotic) histone like domain
BEN76_02870	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_02875	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BEN76_02890	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_02930	SM00479	BEN76_02930
BEN76_02950	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_02985	SM00382	ATPases associated with a variety of cellular activities
BEN76_03200	SM00347	helix_turn_helix multiple antibiotic resistance protein
BEN76_03205	SM01091	Transporter associated domain
BEN76_03270	SM01324	BEN76_03270
BEN76_03300	SM00493	BEN76_03300
BEN76_03305	SM00341	Helicase and RNase D C-terminal
BEN76_03305	SM00474	3'-5' exonuclease
BEN76_03320	SM00382	ATPases associated with a variety of cellular activities
BEN76_03330	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_03365	SM00382	ATPases associated with a variety of cellular activities
BEN76_03365	SM00962	SRP54-type protein, GTPase domain
BEN76_03365	SM00963	SRP54-type protein, helical bundle domain
BEN76_03415	SM00919	Malic enzyme, NAD binding domain
BEN76_03415	SM01274	BEN76_03415
BEN76_03430	SM00996	S-adenosyl-L-homocysteine hydrolase
BEN76_03430	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BEN76_03445	SM00267	diguanylate cyclase
BEN76_03460	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_03535	SM00382	ATPases associated with a variety of cellular activities
BEN76_03550	SM01034	Sensors of blue-light using FAD
BEN76_03555	SM01034	Sensors of blue-light using FAD
BEN76_03590	SM00479	BEN76_03590
BEN76_03650	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BEN76_03650	SM00267	diguanylate cyclase
BEN76_03665	SM00448	cheY-homologous receiver domain
BEN76_03665	SM00862	Transcriptional regulatory protein, C terminal
BEN76_03670	SM00387	Histidine kinase-like ATPases
BEN76_03670	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_03730	SM00830	Chorismate mutase type II
BEN76_03785	SM00052	Putative diguanylate phosphodiesterase
BEN76_03800	SM00841	Elongation factor P, C-terminal
BEN76_03800	SM01185	BEN76_03800
BEN76_03825	SM00460	Transglutaminase/protease-like homologues
BEN76_04025	SM00411	bacterial (prokaryotic) histone like domain
BEN76_04105	SM01236	BEN76_04105
BEN76_04130	SM00382	ATPases associated with a variety of cellular activities
BEN76_04130	SM00487	DEAD-like helicases superfamily
BEN76_04130	SM00490	helicase superfamily c-terminal domain
BEN76_04130	SM00847	Helicase associated domain (HA2)  Add an annotation
BEN76_04190	SM00357	Cold shock protein domain
BEN76_04200	SM00840	BEN76_04200
BEN76_04205	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_04225	SM00382	ATPases associated with a variety of cellular activities
BEN76_04235	SM00382	ATPases associated with a variety of cellular activities
BEN76_04280	SM01034	Sensors of blue-light using FAD
BEN76_04285	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BEN76_04285	SM00534	ATPase domain of DNA mismatch repair MUTS family
BEN76_04340	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BEN76_04395	SM00387	Histidine kinase-like ATPases
BEN76_04395	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_04400	SM00448	cheY-homologous receiver domain
BEN76_04400	SM00862	Transcriptional regulatory protein, C terminal
BEN76_04450	SM00344	helix_turn_helix ASNC type
BEN76_04565	SM00563	Phosphate acyltransferases
BEN76_04575	SM00195	Dual specificity phosphatase, catalytic domain
BEN76_04620	SM00855	Phosphoglycerate mutase family
BEN76_04655	SM00849	Metallo-beta-lactamase superfamily
BEN76_04675	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_04690	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_04725	SM00882	Coenzyme A transferase
BEN76_04730	SM00882	Coenzyme A transferase
BEN76_04755	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_04760	SM00882	Coenzyme A transferase
BEN76_04765	SM00882	Coenzyme A transferase
BEN76_04775	SM00998	Adenylosuccinate lyase C-terminus
BEN76_04810	SM00710	Parallel beta-helix repeats
BEN76_04820	SM00564	beta-propeller repeat
BEN76_04830	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_04885	SM00347	helix_turn_helix multiple antibiotic resistance protein
BEN76_04915	SM00878	Biotin carboxylase C-terminal domain
BEN76_04935	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BEN76_04950	SM00829	Enoylreductase
BEN76_05005	SM00903	Flavin reductase like domain
BEN76_05025	SM00382	ATPases associated with a variety of cellular activities
BEN76_05030	SM00382	ATPases associated with a variety of cellular activities
BEN76_05040	SM01007	Class II Aldolase and Adducin N-terminal domain
BEN76_05045	SM00347	helix_turn_helix multiple antibiotic resistance protein
BEN76_05050	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_05075	SM00858	BEN76_05075
BEN76_05085	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BEN76_05090	SM01130	BEN76_05090
BEN76_05100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_05100	SM00895	BEN76_05100
BEN76_05145	SM00382	ATPases associated with a variety of cellular activities
BEN76_05190	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BEN76_05235	SM00878	Biotin carboxylase C-terminal domain
BEN76_05300	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_05430	SM00382	ATPases associated with a variety of cellular activities
BEN76_05440	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_05455	SM00382	ATPases associated with a variety of cellular activities
BEN76_05460	SM00829	Enoylreductase
BEN76_05470	SM00155	Phospholipase D. Active site motifs.
BEN76_05490	SM00855	Phosphoglycerate mutase family
BEN76_05555	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_05560	SM00382	ATPases associated with a variety of cellular activities
BEN76_05575	SM00852	Probable molybdopterin binding domain
BEN76_05580	SM00852	Probable molybdopterin binding domain
BEN76_05595	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_05605	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BEN76_05625	SM00448	cheY-homologous receiver domain
BEN76_05625	SM01012	BEN76_05625
BEN76_05725	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BEN76_05750	SM00226	Low molecular weight phosphatase family
BEN76_05765	SM00382	ATPases associated with a variety of cellular activities
BEN76_05790	SM00822	BEN76_05790
BEN76_05830	SM00831	Cation transporter/ATPase, N-terminus
BEN76_05910	SM01192	BEN76_05910
BEN76_05910	SM01193	BEN76_05910
BEN76_05975	SM00382	ATPases associated with a variety of cellular activities
BEN76_06015	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_06055	SM00867	YceI-like domain 
BEN76_06060	SM00861	Transketolase, pyrimidine binding domain
BEN76_06100	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_06100	SM00876	Biotin and Thiamin Synthesis associated domain
BEN76_06110	SM01034	Sensors of blue-light using FAD
BEN76_06160	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_06165	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_06195	SM00506	Appr-1"-p processing enzyme
BEN76_06230	SM00861	Transketolase, pyrimidine binding domain
BEN76_06240	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_06250	SM01060	BEN76_06250
BEN76_06255	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BEN76_06260	SM00226	Low molecular weight phosphatase family
BEN76_06280	SM00448	cheY-homologous receiver domain
BEN76_06280	SM00862	Transcriptional regulatory protein, C terminal
BEN76_06285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_06285	SM00387	Histidine kinase-like ATPases
BEN76_06285	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_06310	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_06320	SM00829	Enoylreductase
BEN76_06400	SM00563	Phosphate acyltransferases
BEN76_06410	SM00344	helix_turn_helix ASNC type
BEN76_06420	SM00382	ATPases associated with a variety of cellular activities
BEN76_06435	SM00062	Bacterial periplasmic substrate-binding proteins
BEN76_06435	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BEN76_06465	SM00382	ATPases associated with a variety of cellular activities
BEN76_06525	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BEN76_06545	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_06565	SM00870	BEN76_06565
BEN76_06570	SM00481	DNA polymerase alpha chain like domain
BEN76_06600	SM00267	diguanylate cyclase
BEN76_06625	SM00382	ATPases associated with a variety of cellular activities
BEN76_06635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_06635	SM00895	BEN76_06635
BEN76_06665	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_06670	SM00829	Enoylreductase
BEN76_06720	SM00882	Coenzyme A transferase
BEN76_06725	SM00882	Coenzyme A transferase
BEN76_06735	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BEN76_06800	SM00382	ATPases associated with a variety of cellular activities
BEN76_06810	SM00829	Enoylreductase
BEN76_06845	SM00448	cheY-homologous receiver domain
BEN76_06845	SM00862	Transcriptional regulatory protein, C terminal
BEN76_06850	SM00387	Histidine kinase-like ATPases
BEN76_06850	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_06900	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_06910	SM00411	bacterial (prokaryotic) histone like domain
BEN76_06945	SM00271	DnaJ molecular chaperone homology domain
BEN76_06960	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
BEN76_06970	SM00487	DEAD-like helicases superfamily
BEN76_06970	SM00490	helicase superfamily c-terminal domain
BEN76_06970	SM00982	BEN76_06970
BEN76_06970	SM01058	CarD-like/TRCF domain
BEN76_07010	SM00363	S4 RNA-binding domain
BEN76_07015	SM00382	ATPases associated with a variety of cellular activities
BEN76_07050	SM00935	Outer membrane protein (OmpH-like)
BEN76_07060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BEN76_07090	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_07095	SM00091	PAS domain
BEN76_07095	SM00387	Histidine kinase-like ATPases
BEN76_07095	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_07100	SM00382	ATPases associated with a variety of cellular activities
BEN76_07100	SM00448	cheY-homologous receiver domain
BEN76_07120	SM00382	ATPases associated with a variety of cellular activities
BEN76_07120	SM01086	C-terminal, D2-small domain, of ClpB protein
BEN76_07135	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BEN76_07170	SM01264	BEN76_07170
BEN76_07190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BEN76_07220	SM00344	helix_turn_helix ASNC type
BEN76_07265	SM00220	Serine/Threonine protein kinases, catalytic domain
BEN76_07350	SM00855	Phosphoglycerate mutase family
BEN76_07370	SM00487	DEAD-like helicases superfamily
BEN76_07370	SM00490	helicase superfamily c-terminal domain
BEN76_07375	SM00357	Cold shock protein domain
BEN76_07435	SM00981	BEN76_07435
BEN76_07450	SM00382	ATPases associated with a variety of cellular activities
BEN76_07450	SM01086	C-terminal, D2-small domain, of ClpB protein
BEN76_07470	SM00344	helix_turn_helix ASNC type
BEN76_07480	SM00100	Cyclic nucleotide-monophosphate binding domain
BEN76_07480	SM00419	helix_turn_helix, cAMP Regulatory protein
BEN76_07500	SM00788	Adenylosuccinate synthetase
BEN76_07510	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BEN76_07515	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BEN76_07620	SM00257	Lysin motif
BEN76_07635	SM00936	Penicillin-binding protein 5, C-terminal domain 
BEN76_07645	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_07680	SM00382	ATPases associated with a variety of cellular activities
BEN76_07760	SM00344	helix_turn_helix ASNC type
BEN76_07800	SM00487	DEAD-like helicases superfamily
BEN76_07800	SM00490	helicase superfamily c-terminal domain
BEN76_07835	SM00880	BEN76_07835
BEN76_07835	SM01118	BEN76_07835
BEN76_07875	SM00095	Transthyretin
BEN76_07960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_07960	SM00866	BEN76_07960
BEN76_07985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_07995	SM00357	Cold shock protein domain
BEN76_08035	SM00479	BEN76_08035
BEN76_08080	SM00382	ATPases associated with a variety of cellular activities
BEN76_08100	SM00257	Lysin motif
BEN76_08105	SM00479	BEN76_08105
BEN76_08160	SM01011	Aminopeptidase P, N-terminal domain
BEN76_08210	SM00382	ATPases associated with a variety of cellular activities
BEN76_08210	SM00464	Found in ATP-dependent protease La (LON)
BEN76_08235	SM00478	endonuclease III
BEN76_08290	SM00988	UreE urease accessory protein, N-terminal domain
BEN76_08335	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_08335	SM01091	Transporter associated domain
BEN76_08415	SM00382	ATPases associated with a variety of cellular activities
BEN76_08425	SM00947	Carbonic anhydrase
BEN76_08465	SM01018	B12 binding domain
BEN76_08470	SM00357	Cold shock protein domain
BEN76_08490	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_08540	SM01322	BEN76_08540
BEN76_08550	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BEN76_08705	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_08730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_08730	SM00895	BEN76_08730
BEN76_08755	SM00382	ATPases associated with a variety of cellular activities
BEN76_08760	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_08760	SM00895	BEN76_08760
BEN76_08775	SM00014	Acid phosphatase homologues
BEN76_08840	SM01006	Siderophore biosynthesis protein domain
BEN76_08860	SM00823	Phosphopantetheine attachment site
BEN76_08890	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_08930	SM00912	haemagglutination activity domain
BEN76_08950	SM01130	BEN76_08950
BEN76_09015	SM01004	Delta-aminolevulinic acid dehydratase
BEN76_09050	SM00460	Transglutaminase/protease-like homologues
BEN76_09130	SM00563	Phosphate acyltransferases
BEN76_09165	SM00843	BEN76_09165
BEN76_09200	SM00838	Elongation factor G C-terminus
BEN76_09200	SM00889	Elongation factor G, domain IV
BEN76_09220	SM00825	Beta-ketoacyl synthase
BEN76_09245	SM00257	Lysin motif
BEN76_09255	SM00822	BEN76_09255
BEN76_09260	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BEN76_09300	SM00363	S4 RNA-binding domain
BEN76_09350	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BEN76_09350	SM00292	breast cancer carboxy-terminal domain
BEN76_09350	SM00532	Ligase N family
BEN76_09355	SM00771	ZipA, C-terminal domain (FtsZ-binding)
BEN76_09365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_09385	SM00382	ATPases associated with a variety of cellular activities
BEN76_09385	SM00962	SRP54-type protein, GTPase domain
BEN76_09385	SM00963	SRP54-type protein, helical bundle domain
BEN76_09420	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_09455	SM00845	GatB domain
BEN76_09625	SM00073	Histidine Phosphotransfer domain
BEN76_09625	SM00260	Two component signalling adaptor domain
BEN76_09625	SM00387	Histidine kinase-like ATPases
BEN76_09625	SM00448	cheY-homologous receiver domain
BEN76_09625	SM01231	BEN76_09625
BEN76_09635	SM00260	Two component signalling adaptor domain
BEN76_09640	SM00448	cheY-homologous receiver domain
BEN76_09645	SM00448	cheY-homologous receiver domain
BEN76_09735	SM00849	Metallo-beta-lactamase superfamily
BEN76_09775	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BEN76_09780	SM00344	helix_turn_helix ASNC type
BEN76_09900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BEN76_09900	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BEN76_09905	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BEN76_09930	SM00267	diguanylate cyclase
BEN76_09940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_09940	SM00387	Histidine kinase-like ATPases
BEN76_09940	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_09945	SM00448	cheY-homologous receiver domain
BEN76_09945	SM00862	Transcriptional regulatory protein, C terminal
BEN76_10010	SM00671	Sel1-like repeats.
BEN76_10030	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BEN76_10030	SM01232	BEN76_10030
BEN76_10050	SM00838	Elongation factor G C-terminus
BEN76_10270	SM00331	Sigma factor PP2C-like phosphatases
BEN76_10285	SM00347	helix_turn_helix multiple antibiotic resistance protein
BEN76_10295	SM00382	ATPases associated with a variety of cellular activities
BEN76_10315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BEN76_10315	SM00474	3'-5' exonuclease
BEN76_10315	SM00475	5'-3' exonuclease
BEN76_10315	SM00482	DNA polymerase A domain
BEN76_10330	SM00977	TilS substrate C-terminal domain
BEN76_10350	SM00357	Cold shock protein domain
BEN76_10350	SM00382	ATPases associated with a variety of cellular activities
BEN76_10350	SM00959	Rho termination factor, N-terminal domain
BEN76_10360	SM00411	bacterial (prokaryotic) histone like domain
BEN76_10365	SM00873	B3/4 domain
BEN76_10365	SM00874	tRNA synthetase B5 domain
BEN76_10365	SM00896	Ferredoxin-fold anticodon binding domain
BEN76_10425	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BEN76_10470	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BEN76_10485	SM00954	Region found in RelA / SpoT proteins
BEN76_10505	SM00387	Histidine kinase-like ATPases
BEN76_10505	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_10505	SM00448	cheY-homologous receiver domain
BEN76_10545	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BEN76_10545	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BEN76_10555	SM00422	helix_turn_helix, mercury resistance
BEN76_10610	SM00052	Putative diguanylate phosphodiesterase
BEN76_10610	SM00267	diguanylate cyclase
BEN76_10655	SM00382	ATPases associated with a variety of cellular activities
BEN76_10705	SM00479	BEN76_10705
BEN76_10715	SM00450	Rhodanese Homology Domain
BEN76_10750	SM00481	DNA polymerase alpha chain like domain
BEN76_10775	SM00450	Rhodanese Homology Domain
BEN76_10865	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BEN76_10895	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_10990	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_10990	SM00955	BEN76_10990
BEN76_11045	SM00662	RNA polymerases D
BEN76_11050	SM00363	S4 RNA-binding domain
BEN76_11050	SM01390	BEN76_11050
BEN76_11115	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BEN76_11120	SM01374	BEN76_11120
BEN76_11140	SM00322	K homology RNA-binding domain
BEN76_11155	SM01382	BEN76_11155
BEN76_11155	SM01383	BEN76_11155
BEN76_11175	SM01403	BEN76_11175
BEN76_11190	SM00382	ATPases associated with a variety of cellular activities
BEN76_11225	SM00563	Phosphate acyltransferases
BEN76_11240	SM00487	DEAD-like helicases superfamily
BEN76_11240	SM00490	helicase superfamily c-terminal domain
BEN76_11285	SM00382	ATPases associated with a variety of cellular activities
BEN76_11290	SM00487	DEAD-like helicases superfamily
BEN76_11290	SM00490	helicase superfamily c-terminal domain
BEN76_11300	SM00861	Transketolase, pyrimidine binding domain
BEN76_11320	SM00849	Metallo-beta-lactamase superfamily
BEN76_11370	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_11625	SM00072	Guanylate kinase homologues.
BEN76_11630	SM01409	BEN76_11630
BEN76_11640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BEN76_11640	SM00954	Region found in RelA / SpoT proteins
BEN76_11735	SM00965	Secretin and TonB N terminus short domain
BEN76_11755	SM00842	Cell division protein FtsA
BEN76_11855	SM00382	ATPases associated with a variety of cellular activities
BEN76_11870	SM00822	BEN76_11870
BEN76_11875	SM00947	Carbonic anhydrase
BEN76_11880	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_11880	SM00732	Likely ribonuclease with RNase H fold.
BEN76_11885	SM00448	cheY-homologous receiver domain
BEN76_11885	SM00862	Transcriptional regulatory protein, C terminal
BEN76_11890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_11890	SM00387	Histidine kinase-like ATPases
BEN76_11890	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_11950	SM00382	ATPases associated with a variety of cellular activities
BEN76_11960	SM00357	Cold shock protein domain
BEN76_11980	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_11990	SM00477	DNA/RNA non-specific endonuclease
BEN76_11990	SM00892	DNA/RNA non-specific endonuclease
BEN76_12035	SM00487	DEAD-like helicases superfamily
BEN76_12105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_12155	SM00267	diguanylate cyclase
BEN76_12190	SM00387	Histidine kinase-like ATPases
BEN76_12190	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_12190	SM00448	cheY-homologous receiver domain
BEN76_12200	SM00421	helix_turn_helix, Lux Regulon
BEN76_12200	SM00448	cheY-homologous receiver domain
BEN76_12255	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BEN76_12260	SM00937	BEN76_12260
BEN76_12285	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_12285	SM01240	BEN76_12285
BEN76_12325	SM00864	Tubulin/FtsZ family, GTPase domain
BEN76_12325	SM00865	Tubulin/FtsZ family, C-terminal domain
BEN76_12330	SM00842	Cell division protein FtsA
BEN76_12380	SM00903	Flavin reductase like domain
BEN76_12420	SM00267	diguanylate cyclase
BEN76_12490	SM00387	Histidine kinase-like ATPases
BEN76_12490	SM00433	TopoisomeraseII
BEN76_12550	SM00448	cheY-homologous receiver domain
BEN76_12550	SM00862	Transcriptional regulatory protein, C terminal
BEN76_12555	SM00387	Histidine kinase-like ATPases
BEN76_12555	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_12575	SM00450	Rhodanese Homology Domain
BEN76_12665	SM00382	ATPases associated with a variety of cellular activities
BEN76_12685	SM00382	ATPases associated with a variety of cellular activities
BEN76_12690	SM00382	ATPases associated with a variety of cellular activities
BEN76_12705	SM00382	ATPases associated with a variety of cellular activities
BEN76_12795	SM01130	BEN76_12795
BEN76_12820	SM00062	Bacterial periplasmic substrate-binding proteins
BEN76_12835	SM00382	ATPases associated with a variety of cellular activities
BEN76_12845	SM00052	Putative diguanylate phosphodiesterase
BEN76_12845	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BEN76_12845	SM00267	diguanylate cyclase
BEN76_12855	SM00382	ATPases associated with a variety of cellular activities
BEN76_12870	SM00422	helix_turn_helix, mercury resistance
BEN76_12900	SM00478	endonuclease III
BEN76_12920	SM00829	Enoylreductase
BEN76_12925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_12960	SM00271	DnaJ molecular chaperone homology domain
BEN76_13125	SM00382	ATPases associated with a variety of cellular activities
BEN76_13130	SM00387	Histidine kinase-like ATPases
BEN76_13130	SM00433	TopoisomeraseII
BEN76_13140	SM00480	DNA polymerase III beta subunit
BEN76_13145	SM00382	ATPases associated with a variety of cellular activities
BEN76_13145	SM00760	Bacterial dnaA protein helix-turn-helix domain
BEN76_13160	SM01234	BEN76_13160
BEN76_13235	SM00014	Acid phosphatase homologues
BEN76_13255	SM01001	AIR carboxylase
BEN76_13295	SM00849	Metallo-beta-lactamase superfamily
BEN76_13350	SM00248	ankyrin repeats
BEN76_13370	SM00904	Riboflavin kinase
BEN76_13400	SM00903	Flavin reductase like domain
BEN76_13410	SM00382	ATPases associated with a variety of cellular activities
BEN76_13425	SM00062	Bacterial periplasmic substrate-binding proteins
BEN76_13430	SM00062	Bacterial periplasmic substrate-binding proteins
BEN76_13505	SM00644	BEN76_13505
BEN76_13530	SM00226	Low molecular weight phosphatase family
BEN76_13540	SM00984	UDP binding domain
BEN76_13600	SM00984	UDP binding domain
BEN76_13660	SM00984	UDP binding domain
BEN76_13695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BEN76_13695	SM00895	BEN76_13695
BEN76_13730	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_13740	SM00344	helix_turn_helix ASNC type
BEN76_13750	SM01005	Alanine racemase, C-terminal domain
BEN76_13855	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_13870	SM00836	DALR anticodon binding domain
BEN76_13870	SM01016	Arginyl tRNA synthetase N terminal dom
BEN76_13875	SM00919	Malic enzyme, NAD binding domain
BEN76_13875	SM01274	BEN76_13875
BEN76_13920	SM00382	ATPases associated with a variety of cellular activities
BEN76_13970	SM00382	ATPases associated with a variety of cellular activities
BEN76_13995	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_14105	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_14130	SM00641	Glycosyl hydrolases family 25
BEN76_14145	SM01091	Transporter associated domain
BEN76_14165	SM00434	DNA Topoisomerase IV
BEN76_14245	SM00746	metallochaperone-like domain
BEN76_14250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_14250	SM00387	Histidine kinase-like ATPases
BEN76_14250	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_14255	SM00448	cheY-homologous receiver domain
BEN76_14255	SM00862	Transcriptional regulatory protein, C terminal
BEN76_14305	SM00899	BEN76_14305
BEN76_14315	SM00422	helix_turn_helix, mercury resistance
BEN76_14345	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_14365	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_14380	SM00938	Nitrogen regulatory protein P-II
BEN76_14450	SM00245	tail specific protease
BEN76_14455	SM00382	ATPases associated with a variety of cellular activities
BEN76_14455	SM00448	cheY-homologous receiver domain
BEN76_14460	SM00387	Histidine kinase-like ATPases
BEN76_14460	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_14465	SM00421	helix_turn_helix, Lux Regulon
BEN76_14465	SM00448	cheY-homologous receiver domain
BEN76_14495	SM00899	BEN76_14495
BEN76_14570	SM00448	cheY-homologous receiver domain
BEN76_14570	SM00850	LytTr DNA-binding domain
BEN76_14600	SM00528	Domain in histone-like proteins of HNS family
BEN76_14610	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BEN76_14620	SM00240	Forkhead associated domain
BEN76_14670	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BEN76_14670	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BEN76_14675	SM00649	Ribosomal protein L11/L12
BEN76_14700	SM00663	RNA polymerase I subunit A N-terminus
BEN76_14735	SM00387	Histidine kinase-like ATPases
BEN76_14790	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BEN76_14790	SM00465	GIY-YIG type nucleases (URI domain)
BEN76_14805	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_14815	SM00346	helix_turn_helix isocitrate lyase regulation
BEN76_14835	SM00732	Likely ribonuclease with RNase H fold.
BEN76_14860	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BEN76_14920	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_15065	SM01387	BEN76_15065
BEN76_15070	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_15070	SM00322	K homology RNA-binding domain
BEN76_15100	SM00271	DnaJ molecular chaperone homology domain
BEN76_15115	SM00487	DEAD-like helicases superfamily
BEN76_15115	SM00490	helicase superfamily c-terminal domain
BEN76_15140	SM00116	Domain in cystathionine beta-synthase and other proteins.
BEN76_15140	SM01091	Transporter associated domain
BEN76_15175	SM00344	helix_turn_helix ASNC type
BEN76_15220	SM00729	Elongator protein 3, MiaB family, Radical SAM
BEN76_15245	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_15255	SM00363	S4 RNA-binding domain
BEN76_15295	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BEN76_15340	SM01329	BEN76_15340
BEN76_15350	SM00316	Ribosomal protein S1-like RNA-binding domain
BEN76_15355	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_15365	SM00870	BEN76_15365
BEN76_15375	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BEN76_15400	SM00382	ATPases associated with a variety of cellular activities
BEN76_15420	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BEN76_15420	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BEN76_15420	SM00493	BEN76_15420
BEN76_15430	SM00360	RNA recognition motif
BEN76_15575	SM00671	Sel1-like repeats.
BEN76_15590	SM00917	LeuA allosteric (dimerisation) domain
BEN76_15595	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BEN76_15615	SM00382	ATPases associated with a variety of cellular activities
BEN76_15615	SM00994	ClpX C4-type zinc finger
BEN76_15615	SM01086	C-terminal, D2-small domain, of ClpB protein
BEN76_15690	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BEN76_15690	SM00245	tail specific protease
BEN76_15700	SM00014	Acid phosphatase homologues
BEN76_15710	SM00562	BEN76_15710
BEN76_15720	SM00028	Tetratricopeptide repeats
BEN76_15745	SM00564	beta-propeller repeat
BEN76_15820	SM00825	Beta-ketoacyl synthase
BEN76_15830	SM00822	BEN76_15830
BEN76_15855	SM01323	BEN76_15855
BEN76_15890	SM00387	Histidine kinase-like ATPases
BEN76_15890	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_16030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BEN76_16030	SM00387	Histidine kinase-like ATPases
BEN76_16030	SM00388	His Kinase A (phosphoacceptor) domain
BEN76_16035	SM00448	cheY-homologous receiver domain
BEN76_16035	SM00862	Transcriptional regulatory protein, C terminal
BEN76_16110	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_16140	SM00849	Metallo-beta-lactamase superfamily
BEN76_16150	SM00957	SecA DEAD-like domain
BEN76_16150	SM00958	SecA preprotein cross-linking domain
BEN76_16195	SM00267	diguanylate cyclase
BEN76_16275	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_16300	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_16335	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_16400	SM00671	Sel1-like repeats.
BEN76_16480	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_16490	SM00829	Enoylreductase
BEN76_16560	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BEN76_16575	SM00344	helix_turn_helix ASNC type
BEN76_16630	SM00470	ParB-like nuclease domain
BEN76_16695	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_16770	SM00382	ATPases associated with a variety of cellular activities
BEN76_17045	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_17145	SM00342	helix_turn_helix, arabinose operon control protein
BEN76_17155	SM00530	Helix-turn-helix XRE-family like proteins 
BEN76_17160	SM00671	Sel1-like repeats.
