locus-tag class description C3F22_00010 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3F22_00010 PF00588 SpoU rRNA Methylase family C3F22_00020 PF01121 Dephospho-CoA kinase C3F22_00025 PF01478 Type IV leader peptidase family C3F22_00025 PF06750 Bacterial Peptidase A24 N-terminal domain C3F22_00030 PF00482 Type II secretion system (T2SS), protein F C3F22_00035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C3F22_00035 PF00437 Type II/IV secretion system protein C3F22_00040 PF00121 Triosephosphate isomerase C3F22_00045 PF03840 Preprotein translocase SecG subunit C3F22_00075 PF17384 RimP C-terminal SH3 domain C3F22_00075 PF02576 RimP N-terminal domain C3F22_00080 PF00575 S1 RNA binding domain C3F22_00080 PF13184 NusA-like KH domain C3F22_00080 PF08529 NusA N-terminal domain C3F22_00085 PF08364 Bacterial translation initiation factor IF-2 associated region C3F22_00085 PF00009 Elongation factor Tu GTP binding domain C3F22_00085 PF11987 Translation-initiation factor 2 C3F22_00085 PF04760 Translation initiation factor IF-2, N-terminal region C3F22_00090 PF02033 Ribosome-binding factor A C3F22_00100 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C3F22_00110 PF00361 Proton-conducting membrane transporter C3F22_00115 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3F22_00120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3F22_00120 PF00361 Proton-conducting membrane transporter C3F22_00120 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C3F22_00120 PF13244 Domain of unknown function (DUF4040) C3F22_00135 PF01502 Phosphoribosyl-AMP cyclohydrolase C3F22_00140 PF00106 short chain dehydrogenase C3F22_00145 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F22_00150 PF12848 ABC transporter C3F22_00150 PF00005 ABC transporter C3F22_00175 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F22_00205 PF01795 MraW methylase family C3F22_00215 PF00905 Penicillin binding protein transpeptidase domain C3F22_00215 PF03717 Penicillin-binding Protein dimerisation domain C3F22_00220 PF01225 Mur ligase family, catalytic domain C3F22_00220 PF02875 Mur ligase family, glutamate ligase domain C3F22_00220 PF08245 Mur ligase middle domain C3F22_00225 PF08245 Mur ligase middle domain C3F22_00225 PF01225 Mur ligase family, catalytic domain C3F22_00225 PF02875 Mur ligase family, glutamate ligase domain C3F22_00230 PF00953 Glycosyl transferase family 4 C3F22_00235 PF13847 Methyltransferase domain C3F22_00240 PF00905 Penicillin binding protein transpeptidase domain C3F22_00240 PF00912 Transglycosylase C3F22_00240 PF17092 Penicillin-binding protein OB-like domain C3F22_00265 PF07660 Secretin and TonB N terminus short domain C3F22_00265 PF03958 Bacterial type II/III secretion system short domain C3F22_00265 PF11741 AMIN domain C3F22_00265 PF00263 Bacterial type II and III secretion system protein C3F22_00270 PF01202 Shikimate kinase C3F22_00275 PF01761 3-dehydroquinate synthase C3F22_00285 PF01645 Conserved region in glutamate synthase C3F22_00285 PF01493 GXGXG motif C3F22_00285 PF00310 Glutamine amidotransferases class-II C3F22_00285 PF04898 Glutamate synthase central domain C3F22_00290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3F22_00290 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_00295 PF04011 LemA family C3F22_00350 PF01381 Helix-turn-helix C3F22_00420 PF00114 Pilin (bacterial filament) C3F22_00420 PF07963 Prokaryotic N-terminal methylation motif C3F22_00430 PF04932 O-Antigen ligase C3F22_00430 PF15864 Protein glycosylation ligase C3F22_00430 PF11846 Virulence factor membrane-bound polymerase, C-terminal C3F22_00435 PF00210 Ferritin-like domain C3F22_00440 PF04324 BFD-like [2Fe-2S] binding domain C3F22_00445 PF01042 Endoribonuclease L-PSP C3F22_00450 PF07282 Putative transposase DNA-binding domain C3F22_00450 PF12323 Helix-turn-helix domain C3F22_00450 PF01385 Probable transposase C3F22_00455 PF04607 Region found in RelA / SpoT proteins C3F22_00455 PF02824 TGS domain C3F22_00455 PF13291 ACT domain C3F22_00460 PF01192 RNA polymerase Rpb6 C3F22_00465 PF00625 Guanylate kinase C3F22_00470 PF02401 LytB protein C3F22_00475 PF07963 Prokaryotic N-terminal methylation motif C3F22_00475 PF00114 Pilin (bacterial filament) C3F22_00510 PF00886 Ribosomal protein S16 C3F22_00515 PF01782 RimM N-terminal domain C3F22_00515 PF05239 PRC-barrel domain C3F22_00520 PF01746 tRNA (Guanine-1)-methyltransferase C3F22_00525 PF01245 Ribosomal protein L19 C3F22_00530 PF00561 alpha/beta hydrolase fold C3F22_00535 PF00561 alpha/beta hydrolase fold C3F22_00540 PF03280 Proteobacterial lipase chaperone protein C3F22_00545 PF01509 TruB family pseudouridylate synthase (N terminal domain) C3F22_00545 PF16198 tRNA pseudouridylate synthase B C-terminal domain C3F22_00545 PF09157 Pseudouridine synthase II TruB, C-terminal C3F22_00550 PF01925 Sulfite exporter TauE/SafE C3F22_00560 PF00892 EamA-like transporter family C3F22_00575 PF00892 EamA-like transporter family C3F22_00580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_00580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F22_00585 PF01565 FAD binding domain C3F22_00585 PF02913 FAD linked oxidases, C-terminal domain C3F22_00600 PF07690 Major Facilitator Superfamily C3F22_00610 PF12823 Domain of unknown function (DUF3817) C3F22_00615 PF12805 FUSC-like inner membrane protein yccS C3F22_00620 PF00080 Copper/zinc superoxide dismutase (SODC) C3F22_00625 PF01594 AI-2E family transporter C3F22_00630 PF13614 AAA domain C3F22_00645 PF08241 Methyltransferase domain C3F22_00660 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3F22_00665 PF01197 Ribosomal protein L31 C3F22_00670 PF03109 ABC1 family C3F22_00680 PF01554 MatE C3F22_00690 PF06969 HemN C-terminal domain C3F22_00690 PF04055 Radical SAM superfamily C3F22_00700 PF00313 'Cold-shock' DNA-binding domain C3F22_00705 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F22_00705 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_00705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_00705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_00710 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C3F22_00710 PF01488 Shikimate / quinate 5-dehydrogenase C3F22_00710 PF08501 Shikimate dehydrogenase substrate binding domain C3F22_00720 PF01218 Coproporphyrinogen III oxidase C3F22_00725 PF04055 Radical SAM superfamily C3F22_00725 PF06969 HemN C-terminal domain C3F22_00730 PF00925 GTP cyclohydrolase II C3F22_00735 PF02780 Transketolase, C-terminal domain C3F22_00735 PF02779 Transketolase, pyrimidine binding domain C3F22_00735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C3F22_00740 PF00459 Inositol monophosphatase family C3F22_00745 PF00271 Helicase conserved C-terminal domain C3F22_00745 PF00270 DEAD/DEAH box helicase C3F22_00750 PF00005 ABC transporter C3F22_00755 PF02405 Permease MlaE C3F22_00760 PF02470 MlaD protein C3F22_00765 PF05494 MlaC protein C3F22_00775 PF01544 CorA-like Mg2+ transporter protein C3F22_00780 PF03641 Possible lysine decarboxylase C3F22_00790 PF00156 Phosphoribosyl transferase domain C3F22_00795 PF00271 Helicase conserved C-terminal domain C3F22_00795 PF17191 RecG wedge domain C3F22_00795 PF00270 DEAD/DEAH box helicase C3F22_00810 PF01553 Acyltransferase C3F22_00820 PF00375 Sodium:dicarboxylate symporter family C3F22_00850 PF01926 50S ribosome-binding GTPase C3F22_00855 PF02082 Transcriptional regulator C3F22_00860 PF00175 Oxidoreductase NAD-binding domain C3F22_00860 PF00042 Globin C3F22_00860 PF00970 Oxidoreductase FAD-binding domain C3F22_00865 PF05872 Bacterial protein of unknown function (DUF853) C3F22_00870 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F22_00875 PF00117 Glutamine amidotransferase class-I C3F22_00880 PF00338 Ribosomal protein S10p/S20e C3F22_00885 PF00297 Ribosomal protein L3 C3F22_00890 PF00573 Ribosomal protein L4/L1 family C3F22_00895 PF00276 Ribosomal protein L23 C3F22_00900 PF03947 Ribosomal Proteins L2, C-terminal domain C3F22_00900 PF00181 Ribosomal Proteins L2, RNA binding domain C3F22_00905 PF00203 Ribosomal protein S19 C3F22_00910 PF00237 Ribosomal protein L22p/L17e C3F22_00915 PF00189 Ribosomal protein S3, C-terminal domain C3F22_00915 PF07650 KH domain C3F22_00920 PF00252 Ribosomal protein L16p/L10e C3F22_00925 PF00831 Ribosomal L29 protein C3F22_00930 PF00366 Ribosomal protein S17 C3F22_00935 PF00238 Ribosomal protein L14p/L23e C3F22_00940 PF00467 KOW motif C3F22_00940 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C3F22_00945 PF00673 ribosomal L5P family C-terminus C3F22_00945 PF00281 Ribosomal protein L5 C3F22_00950 PF00253 Ribosomal protein S14p/S29e C3F22_00955 PF00410 Ribosomal protein S8 C3F22_00960 PF00347 Ribosomal protein L6 C3F22_00965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C3F22_00970 PF00333 Ribosomal protein S5, N-terminal domain C3F22_00970 PF03719 Ribosomal protein S5, C-terminal domain C3F22_00975 PF00327 Ribosomal protein L30p/L7e C3F22_00980 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C3F22_00985 PF00344 SecY translocase C3F22_00990 PF00444 Ribosomal protein L36 C3F22_00995 PF00416 Ribosomal protein S13/S18 C3F22_01000 PF00411 Ribosomal protein S11 C3F22_01005 PF00163 Ribosomal protein S4/S9 N-terminal domain C3F22_01005 PF01479 S4 domain C3F22_01010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C3F22_01010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C3F22_01010 PF01000 RNA polymerase Rpb3/RpoA insert domain C3F22_01015 PF01196 Ribosomal protein L17 C3F22_01020 PF00743 Flavin-binding monooxygenase-like C3F22_01025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_01025 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_01025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_01030 PF03937 Flavinator of succinate dehydrogenase C3F22_01055 PF00892 EamA-like transporter family C3F22_01065 PF09526 Probable metal-binding protein (DUF2387) C3F22_01070 PF01432 Peptidase family M3 C3F22_01080 PF17876 Cold shock domain C3F22_01080 PF08461 Ribonuclease R winged-helix domain C3F22_01080 PF08206 Ribonuclease B OB domain C3F22_01080 PF00773 RNB domain C3F22_01080 PF00575 S1 RNA binding domain C3F22_01120 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3F22_01130 PF03631 Virulence factor BrkB C3F22_01135 PF03358 NADPH-dependent FMN reductase C3F22_01190 PF02130 Uncharacterized protein family UPF0054 C3F22_01195 PF02562 PhoH-like protein C3F22_01200 PF04055 Radical SAM superfamily C3F22_01200 PF01938 TRAM domain C3F22_01200 PF00919 Uncharacterized protein family UPF0004 C3F22_01205 PF01551 Peptidase family M23 C3F22_01205 PF01464 Transglycosylase SLT domain C3F22_01205 PF10145 Phage-related minor tail protein C3F22_01215 PF00056 lactate/malate dehydrogenase, NAD binding domain C3F22_01215 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C3F22_01245 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C3F22_01250 PF01066 CDP-alcohol phosphatidyltransferase C3F22_01295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F22_01295 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_01295 PF00403 Heavy-metal-associated domain C3F22_01305 PF04273 Putative phosphatase (DUF442) C3F22_01305 PF00753 Metallo-beta-lactamase superfamily C3F22_01315 PF00085 Thioredoxin C3F22_01320 PF03061 Thioesterase superfamily C3F22_01330 PF04461 Protein of unknown function (DUF520) C3F22_01340 PF01266 FAD dependent oxidoreductase C3F22_01340 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C3F22_01350 PF03795 YCII-related domain C3F22_01355 PF04279 Intracellular septation protein A C3F22_01360 PF02811 PHP domain C3F22_01365 PF01062 Bestrophin, RFP-TM, chloride channel C3F22_01370 PF04002 RadC-like JAB domain C3F22_01375 PF02441 Flavoprotein C3F22_01375 PF04127 DNA / pantothenate metabolism flavoprotein C3F22_01385 PF01207 Dihydrouridine synthase (Dus) C3F22_01395 PF07690 Major Facilitator Superfamily C3F22_01405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3F22_01405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3F22_01410 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C3F22_01415 PF02233 NAD(P) transhydrogenase beta subunit C3F22_01425 PF01261 Xylose isomerase-like TIM barrel C3F22_01430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F22_01430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F22_01435 PF00378 Enoyl-CoA hydratase/isomerase C3F22_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_01440 PF00672 HAMP domain C3F22_01440 PF00072 Response regulator receiver domain C3F22_01440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C3F22_01440 PF00512 His Kinase A (phospho-acceptor) domain C3F22_01440 PF01627 Hpt domain C3F22_01445 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_01455 PF05958 tRNA (Uracil-5-)-methyltransferase C3F22_01460 PF04607 Region found in RelA / SpoT proteins C3F22_01460 PF02824 TGS domain C3F22_01460 PF13291 ACT domain C3F22_01475 PF07549 SecD/SecF GG Motif C3F22_01475 PF02355 Protein export membrane protein C3F22_01480 PF02355 Protein export membrane protein C3F22_01480 PF07549 SecD/SecF GG Motif C3F22_01480 PF13721 SecD export protein N-terminal TM region C3F22_01485 PF02699 Preprotein translocase subunit C3F22_01490 PF01702 Queuine tRNA-ribosyltransferase C3F22_01500 PF04011 LemA family C3F22_01510 PF02547 Queuosine biosynthesis protein C3F22_01520 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_01525 PF13193 AMP-binding enzyme C-terminal domain C3F22_01525 PF00501 AMP-binding enzyme C3F22_01545 PF03129 Anticodon binding domain C3F22_01545 PF02824 TGS domain C3F22_01545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F22_01545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F22_01550 PF00707 Translation initiation factor IF-3, C-terminal domain C3F22_01550 PF05198 Translation initiation factor IF-3, N-terminal domain C3F22_01570 PF00011 Hsp20/alpha crystallin family C3F22_01575 PF00043 Glutathione S-transferase, C-terminal domain C3F22_01575 PF02798 Glutathione S-transferase, N-terminal domain C3F22_01585 PF09335 SNARE associated Golgi protein C3F22_01595 PF01632 Ribosomal protein L35 C3F22_01600 PF00453 Ribosomal protein L20 C3F22_01610 PF01409 tRNA synthetases class II core domain (F) C3F22_01610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C3F22_01615 PF03483 B3/4 domain C3F22_01615 PF01588 Putative tRNA binding domain C3F22_01615 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C3F22_01615 PF03147 Ferredoxin-fold anticodon binding domain C3F22_01615 PF03484 tRNA synthetase B5 domain C3F22_01620 PF00216 Bacterial DNA-binding protein C3F22_01630 PF07498 Rho termination factor, N-terminal domain C3F22_01630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F22_01630 PF07497 Rho termination factor, RNA-binding domain C3F22_01635 PF00085 Thioredoxin C3F22_01640 PF02541 Ppx/GppA phosphatase family C3F22_01645 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C3F22_01650 PF01171 PP-loop family C3F22_01650 PF09179 TilS substrate binding domain C3F22_01650 PF11734 TilS substrate C-terminal domain C3F22_01655 PF03807 NADP oxidoreductase coenzyme F420-dependent C3F22_01655 PF14748 Pyrroline-5-carboxylate reductase dimerisation C3F22_01660 PF02325 YGGT family C3F22_01670 PF01367 5'-3' exonuclease, C-terminal SAM fold C3F22_01670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3F22_01670 PF00476 DNA polymerase family A C3F22_01670 PF01612 3'-5' exonuclease C3F22_01690 PF00437 Type II/IV secretion system protein C3F22_01695 PF02566 OsmC-like protein C3F22_01700 PF00795 Carbon-nitrogen hydrolase C3F22_01775 PF04386 Stringent starvation protein B C3F22_01780 PF00043 Glutathione S-transferase, C-terminal domain C3F22_01780 PF02798 Glutathione S-transferase, N-terminal domain C3F22_01785 PF00380 Ribosomal protein S9/S16 C3F22_01790 PF00572 Ribosomal protein L13 C3F22_01795 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C3F22_01800 PF00398 Ribosomal RNA adenine dimethylase C3F22_01805 PF00149 Calcineurin-like phosphoesterase C3F22_01835 PF01926 50S ribosome-binding GTPase C3F22_01835 PF16360 GTP-binding GTPase Middle Region C3F22_01835 PF13167 GTP-binding GTPase N-terminal C3F22_01845 PF13091 PLD-like domain C3F22_01850 PF00149 Calcineurin-like phosphoesterase C3F22_01860 PF00083 Sugar (and other) transporter C3F22_01860 PF07690 Major Facilitator Superfamily C3F22_01865 PF03006 Haemolysin-III related C3F22_01885 PF00378 Enoyl-CoA hydratase/isomerase C3F22_01885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F22_01885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F22_01890 PF02803 Thiolase, C-terminal domain C3F22_01890 PF00108 Thiolase, N-terminal domain C3F22_01895 PF12833 Helix-turn-helix domain C3F22_01895 PF02311 AraC-like ligand binding domain C3F22_01900 PF02515 CoA-transferase family III C3F22_01905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F22_01905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F22_01920 PF00108 Thiolase, N-terminal domain C3F22_01920 PF02803 Thiolase, C-terminal domain C3F22_01925 PF00114 Pilin (bacterial filament) C3F22_01925 PF07963 Prokaryotic N-terminal methylation motif C3F22_01930 PF13505 Outer membrane protein beta-barrel domain C3F22_01930 PF00691 OmpA family C3F22_01940 PF00324 Amino acid permease C3F22_01945 PF05175 Methyltransferase small domain C3F22_01945 PF08468 Methyltransferase small domain N-terminal C3F22_01950 PF00860 Permease family C3F22_01960 PF01741 Large-conductance mechanosensitive channel, MscL C3F22_01965 PF09312 SurA N-terminal domain C3F22_01965 PF00639 PPIC-type PPIASE domain C3F22_01970 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3F22_01970 PF06827 Zinc finger found in FPG and IleRS C3F22_01970 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3F22_01975 PF04966 Carbohydrate-selective porin, OprB family C3F22_01980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_01995 PF01571 Aminomethyltransferase folate-binding domain C3F22_02000 PF07732 Multicopper oxidase C3F22_02000 PF07731 Multicopper oxidase C3F22_02005 PF00330 Aconitase family (aconitate hydratase) C3F22_02005 PF00694 Aconitase C-terminal domain C3F22_02050 PF00849 RNA pseudouridylate synthase C3F22_02070 PF08274 PhnA Zinc-Ribbon C3F22_02070 PF03831 PhnA domain C3F22_02085 PF03070 TENA/THI-4/PQQC family C3F22_02085 PF02581 Thiamine monophosphate synthase C3F22_02085 PF08543 Phosphomethylpyrimidine kinase C3F22_02090 PF13419 Haloacid dehalogenase-like hydrolase C3F22_02110 PF05656 Protein of unknown function (DUF805) C3F22_02120 PF13737 Transposase DDE domain C3F22_02125 PF04183 IucA / IucC family C3F22_02125 PF06276 Ferric iron reductase FhuF-like transporter C3F22_02130 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C3F22_02135 PF06276 Ferric iron reductase FhuF-like transporter C3F22_02135 PF04183 IucA / IucC family C3F22_02150 PF07690 Major Facilitator Superfamily C3F22_02155 PF07715 TonB-dependent Receptor Plug Domain C3F22_02155 PF00593 TonB dependent receptor C3F22_02205 PF13936 Helix-turn-helix domain C3F22_02205 PF00665 Integrase core domain C3F22_02215 PF00268 Ribonucleotide reductase, small chain C3F22_02225 PF03477 ATP cone domain C3F22_02225 PF02867 Ribonucleotide reductase, barrel domain C3F22_02225 PF00317 Ribonucleotide reductase, all-alpha domain C3F22_02230 PF00486 Transcriptional regulatory protein, C terminal C3F22_02230 PF00072 Response regulator receiver domain C3F22_02235 PF00512 His Kinase A (phospho-acceptor) domain C3F22_02235 PF00672 HAMP domain C3F22_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_02245 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C3F22_02250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C3F22_02255 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C3F22_02255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C3F22_02265 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C3F22_02265 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C3F22_02265 PF10531 SLBB domain C3F22_02270 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C3F22_02270 PF00384 Molybdopterin oxidoreductase C3F22_02270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F22_02275 PF00146 NADH dehydrogenase C3F22_02280 PF12838 4Fe-4S dicluster domain C3F22_02285 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C3F22_02290 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3F22_02295 PF00361 Proton-conducting membrane transporter C3F22_02295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3F22_02300 PF00361 Proton-conducting membrane transporter C3F22_02305 PF00361 Proton-conducting membrane transporter C3F22_02315 PF00313 'Cold-shock' DNA-binding domain C3F22_02335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_02335 PF03466 LysR substrate binding domain C3F22_02340 PF00175 Oxidoreductase NAD-binding domain C3F22_02340 PF00970 Oxidoreductase FAD-binding domain C3F22_02355 PF05552 Conserved TM helix C3F22_02370 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_02385 PF00909 Ammonium Transporter Family C3F22_02390 PF00753 Metallo-beta-lactamase superfamily C3F22_02400 PF13359 DDE superfamily endonuclease C3F22_02400 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_02410 PF13359 DDE superfamily endonuclease C3F22_02410 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_02415 PF03783 Curli production assembly/transport component CsgG C3F22_02425 PF05643 Putative bacterial lipoprotein (DUF799) C3F22_02430 PF09334 tRNA synthetases class I (M) C3F22_02430 PF01588 Putative tRNA binding domain C3F22_02440 PF10609 NUBPL iron-transfer P-loop NTPase C3F22_02455 PF16868 NMT1-like family C3F22_02465 PF00692 dUTPase C3F22_02495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F22_02495 PF04073 Aminoacyl-tRNA editing domain C3F22_02495 PF03129 Anticodon binding domain C3F22_02500 PF00873 AcrB/AcrD/AcrF family C3F22_02515 PF00072 Response regulator receiver domain C3F22_02520 PF00072 Response regulator receiver domain C3F22_02525 PF01584 CheW-like domain C3F22_02530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F22_02530 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C3F22_02535 PF00072 Response regulator receiver domain C3F22_02535 PF01627 Hpt domain C3F22_02535 PF01584 CheW-like domain C3F22_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_02545 PF01546 Peptidase family M20/M25/M40 C3F22_02545 PF07687 Peptidase dimerisation domain C3F22_02560 PF04304 Protein of unknown function (DUF454) C3F22_02620 PF00667 FAD binding domain C3F22_02620 PF00258 Flavodoxin C3F22_02620 PF00175 Oxidoreductase NAD-binding domain C3F22_02630 PF12805 FUSC-like inner membrane protein yccS C3F22_02635 PF07690 Major Facilitator Superfamily C3F22_02640 PF00881 Nitroreductase family C3F22_02645 PF03616 Sodium/glutamate symporter C3F22_02650 PF01235 Sodium:alanine symporter family C3F22_02660 PF02417 Chromate transporter C3F22_02665 PF01734 Patatin-like phospholipase C3F22_02670 PF03061 Thioesterase superfamily C3F22_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_02685 PF03466 LysR substrate binding domain C3F22_02690 PF02798 Glutathione S-transferase, N-terminal domain C3F22_02705 PF07683 Cobalamin synthesis protein cobW C-terminal domain C3F22_02705 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3F22_02710 PF07152 YaeQ protein C3F22_02715 PF02308 MgtC family C3F22_02720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_02725 PF00990 Diguanylate cyclase, GGDEF domain C3F22_02765 PF01906 Putative heavy-metal-binding C3F22_02770 PF01906 Putative heavy-metal-binding C3F22_02775 PF02321 Outer membrane efflux protein C3F22_02780 PF00873 AcrB/AcrD/AcrF family C3F22_02785 PF00529 HlyD membrane-fusion protein of T1SS C3F22_02785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F22_02790 PF01569 PAP2 superfamily C3F22_02800 PF00348 Polyprenyl synthetase C3F22_02805 PF00829 Ribosomal prokaryotic L21 protein C3F22_02810 PF01016 Ribosomal L27 protein C3F22_02815 PF03548 Outer membrane lipoprotein carrier protein LolA C3F22_02830 PF02403 Seryl-tRNA synthetase N-terminal domain C3F22_02830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F22_02835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F22_02835 PF14824 Sirohaem biosynthesis protein central C3F22_02835 PF10414 Sirohaem synthase dimerisation region C3F22_02840 PF00588 SpoU rRNA Methylase family C3F22_02845 PF03050 Transposase IS66 family C3F22_02845 PF13817 IS66 C-terminal element C3F22_02845 PF13007 Transposase C of IS166 homeodomain C3F22_02845 PF13005 zinc-finger binding domain of transposase IS66 C3F22_02865 PF13520 Amino acid permease C3F22_02875 PF00465 Iron-containing alcohol dehydrogenase C3F22_02885 PF03099 Biotin/lipoate A/B protein ligase family C3F22_02895 PF04542 Sigma-70 region 2 C3F22_02895 PF03979 Sigma-70 factor, region 1.1 C3F22_02895 PF00140 Sigma-70 factor, region 1.2 C3F22_02895 PF04539 Sigma-70 region 3 C3F22_02895 PF04546 Sigma-70, non-essential region C3F22_02895 PF04545 Sigma-70, region 4 C3F22_02915 PF09335 SNARE associated Golgi protein C3F22_02940 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F22_02955 PF02261 Aspartate decarboxylase C3F22_02960 PF01195 Peptidyl-tRNA hydrolase C3F22_02965 PF01386 Ribosomal L25p family C3F22_02970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C3F22_02970 PF14572 Phosphoribosyl synthetase-associated domain C3F22_02995 PF00288 GHMP kinases N terminal domain C3F22_02995 PF08544 GHMP kinases C terminal C3F22_03000 PF03550 Outer membrane lipoprotein LolB C3F22_03010 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C3F22_03010 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C3F22_03010 PF01488 Shikimate / quinate 5-dehydrogenase C3F22_03015 PF08278 DNA primase DnaG DnaB-binding C3F22_03015 PF01807 CHC2 zinc finger C3F22_03015 PF08275 DNA primase catalytic core, N-terminal domain C3F22_03015 PF10410 DnaB-helicase binding domain of primase C3F22_03020 PF13525 Outer membrane lipoprotein C3F22_03025 PF01479 S4 domain C3F22_03025 PF00849 RNA pseudouridylate synthase C3F22_03035 PF03358 NADPH-dependent FMN reductase C3F22_03040 PF01668 SmpB protein C3F22_03045 PF01467 Cytidylyltransferase-like C3F22_03050 PF00037 4Fe-4S binding domain C3F22_03070 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_03075 PF01042 Endoribonuclease L-PSP C3F22_03080 PF00440 Bacterial regulatory proteins, tetR family C3F22_03085 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F22_03085 PF03449 Transcription elongation factor, N-terminal C3F22_03090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C3F22_03090 PF02142 MGS-like domain C3F22_03090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F22_03095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C3F22_03095 PF00117 Glutamine amidotransferase class-I C3F22_03115 PF01985 CRS1 / YhbY (CRM) domain C3F22_03120 PF01728 FtsJ-like methyltransferase C3F22_03125 PF17862 AAA+ lid domain C3F22_03125 PF06480 FtsH Extracellular C3F22_03125 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_03125 PF01434 Peptidase family M41 C3F22_03135 PF00809 Pterin binding enzyme C3F22_03170 PF00571 CBS domain C3F22_03170 PF03471 Transporter associated domain C3F22_03170 PF01595 Cyclin M transmembrane N-terminal domain C3F22_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_03175 PF03466 LysR substrate binding domain C3F22_03185 PF00463 Isocitrate lyase family C3F22_03190 PF00873 AcrB/AcrD/AcrF family C3F22_03195 PF00873 AcrB/AcrD/AcrF family C3F22_03200 PF01769 Divalent cation transporter C3F22_03200 PF03448 MgtE intracellular N domain C3F22_03200 PF00571 CBS domain C3F22_03210 PF01435 Peptidase family M48 C3F22_03215 PF01464 Transglycosylase SLT domain C3F22_03215 PF10145 Phage-related minor tail protein C3F22_03215 PF01551 Peptidase family M23 C3F22_03220 PF01171 PP-loop family C3F22_03230 PF01464 Transglycosylase SLT domain C3F22_03230 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F22_03235 PF03449 Transcription elongation factor, N-terminal C3F22_03235 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F22_03250 PF03466 LysR substrate binding domain C3F22_03250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_03255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_03255 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_03255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_03260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F22_03260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_03260 PF11890 Domain of unknown function (DUF3410) C3F22_03265 PF00152 tRNA synthetases class II (D, K and N) C3F22_03270 PF13673 Acetyltransferase (GNAT) domain C3F22_03275 PF03050 Transposase IS66 family C3F22_03275 PF13817 IS66 C-terminal element C3F22_03275 PF13007 Transposase C of IS166 homeodomain C3F22_03275 PF13005 zinc-finger binding domain of transposase IS66 C3F22_03300 PF01743 Poly A polymerase head domain C3F22_03300 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F22_03305 PF00390 Malic enzyme, N-terminal domain C3F22_03305 PF01515 Phosphate acetyl/butaryl transferase C3F22_03305 PF03949 Malic enzyme, NAD binding domain C3F22_03310 PF00563 EAL domain C3F22_03310 PF03707 Bacterial signalling protein N terminal repeat C3F22_03310 PF00990 Diguanylate cyclase, GGDEF domain C3F22_03315 PF04452 RNA methyltransferase C3F22_03320 PF02219 Methylenetetrahydrofolate reductase C3F22_03325 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C3F22_03325 PF05221 S-adenosyl-L-homocysteine hydrolase C3F22_03340 PF18073 Rubredoxin metal binding domain C3F22_03355 PF01235 Sodium:alanine symporter family C3F22_03360 PF00324 Amino acid permease C3F22_03370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3F22_03370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F22_03375 PF01678 Diaminopimelate epimerase C3F22_03380 PF00561 alpha/beta hydrolase fold C3F22_03385 PF00589 Phage integrase family C3F22_03385 PF02899 Phage integrase, N-terminal SAM-like domain C3F22_03395 PF01037 Lrp/AsnC ligand binding domain C3F22_03400 PF01810 LysE type translocator C3F22_03405 PF01012 Electron transfer flavoprotein domain C3F22_03410 PF01012 Electron transfer flavoprotein domain C3F22_03410 PF00766 Electron transfer flavoprotein FAD-binding domain C3F22_03420 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F22_03420 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F22_03440 PF13533 Biotin-lipoyl like C3F22_03450 PF00266 Aminotransferase class-V C3F22_03460 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C3F22_03475 PF12704 MacB-like periplasmic core domain C3F22_03475 PF02687 FtsX-like permease family C3F22_03480 PF00005 ABC transporter C3F22_03485 PF13567 Domain of unknown function (DUF4131) C3F22_03485 PF00753 Metallo-beta-lactamase superfamily C3F22_03485 PF03772 Competence protein C3F22_03495 PF01343 Peptidase family S49 C3F22_03495 PF06965 Na+/H+ antiporter 1 C3F22_03500 PF08386 TAP-like protein C3F22_03500 PF00561 alpha/beta hydrolase fold C3F22_03505 PF00551 Formyl transferase C3F22_03510 PF00586 AIR synthase related protein, N-terminal domain C3F22_03510 PF02769 AIR synthase related protein, C-terminal domain C3F22_03515 PF01594 AI-2E family transporter C3F22_03520 PF00308 Bacterial dnaA protein C3F22_03520 PF11638 DnaA N-terminal domain C3F22_03520 PF08299 Bacterial dnaA protein helix-turn-helix C3F22_03550 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3F22_03550 PF00588 SpoU rRNA Methylase family C3F22_03555 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C3F22_03570 PF00691 OmpA family C3F22_03575 PF07676 WD40-like Beta Propeller Repeat C3F22_03575 PF04052 TolB amino-terminal domain C3F22_03585 PF02472 Biopolymer transport protein ExbD/TolR C3F22_03590 PF01618 MotA/TolQ/ExbB proton channel family C3F22_03595 PF03061 Thioesterase superfamily C3F22_03600 PF07687 Peptidase dimerisation domain C3F22_03600 PF01546 Peptidase family M20/M25/M40 C3F22_03605 PF05496 Holliday junction DNA helicase RuvB P-loop domain C3F22_03605 PF05491 RuvB C-terminal winged helix domain C3F22_03605 PF17864 RuvB AAA lid domain C3F22_03610 PF01330 RuvA N terminal domain C3F22_03610 PF07499 RuvA, C-terminal domain C3F22_03615 PF01966 HD domain C3F22_03625 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C3F22_03625 PF02769 AIR synthase related protein, C-terminal domain C3F22_03625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C3F22_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_03635 PF03466 LysR substrate binding domain C3F22_03640 PF01784 NIF3 (NGG1p interacting factor 3) C3F22_03655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C3F22_03655 PF01348 Type II intron maturase C3F22_03685 PF00881 Nitroreductase family C3F22_03690 PF00378 Enoyl-CoA hydratase/isomerase C3F22_03695 PF00293 NUDIX domain C3F22_03695 PF01467 Cytidylyltransferase-like C3F22_03700 PF04264 YceI-like domain C3F22_03705 PF03466 LysR substrate binding domain C3F22_03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_03710 PF01810 LysE type translocator C3F22_03715 PF00578 AhpC/TSA family C3F22_03725 PF06508 Queuosine biosynthesis protein QueC C3F22_03730 PF04055 Radical SAM superfamily C3F22_03735 PF14602 Hexapeptide repeat of succinyl-transferase C3F22_03735 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C3F22_03735 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_03750 PF03466 LysR substrate binding domain C3F22_03755 PF12857 TOBE-like domain C3F22_03755 PF00005 ABC transporter C3F22_03760 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_03765 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_03790 PF02618 YceG-like family C3F22_03795 PF02223 Thymidylate kinase C3F22_03805 PF00890 FAD binding domain C3F22_03805 PF02910 Fumarate reductase flavoprotein C-term C3F22_03815 PF13180 PDZ domain C3F22_03825 PF06421 GTP-binding protein LepA C-terminus C3F22_03825 PF00679 Elongation factor G C-terminus C3F22_03825 PF00009 Elongation factor Tu GTP binding domain C3F22_03825 PF03144 Elongation factor Tu domain 2 C3F22_03830 PF10502 Signal peptidase, peptidase S26 C3F22_03840 PF00035 Double-stranded RNA binding motif C3F22_03840 PF14622 Ribonuclease-III-like C3F22_03845 PF07650 KH domain C3F22_03845 PF01926 50S ribosome-binding GTPase C3F22_03855 PF11967 Recombination protein O N terminal C3F22_03855 PF02565 Recombination protein O C terminal C3F22_03860 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C3F22_03865 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C3F22_03890 PF01554 MatE C3F22_03900 PF00557 Metallopeptidase family M24 C3F22_03905 PF00318 Ribosomal protein S2 C3F22_03910 PF00889 Elongation factor TS C3F22_03925 PF03330 Lytic transglycolase C3F22_03925 PF05036 Sporulation related domain C3F22_03930 PF13406 Transglycosylase SLT domain C3F22_03940 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C3F22_03940 PF14489 QueF-like protein C3F22_03945 PF01061 ABC-2 type transporter C3F22_03950 PF00005 ABC transporter C3F22_03990 PF00464 Serine hydroxymethyltransferase C3F22_04010 PF03350 Uncharacterized protein family, UPF0114 C3F22_04020 PF05816 Toxic anion resistance protein (TelA) C3F22_04030 PF13192 Thioredoxin domain C3F22_04030 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_04035 PF00037 4Fe-4S binding domain C3F22_04045 PF13411 MerR HTH family regulatory protein C3F22_04070 PF00175 Oxidoreductase NAD-binding domain C3F22_04070 PF00970 Oxidoreductase FAD-binding domain C3F22_04075 PF18389 TrmO C-terminal domain C3F22_04075 PF01980 tRNA-methyltransferase O C3F22_04100 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_04105 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_04115 PF00437 Type II/IV secretion system protein C3F22_04125 PF00486 Transcriptional regulatory protein, C terminal C3F22_04125 PF00072 Response regulator receiver domain C3F22_04130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_04130 PF08521 Two-component sensor kinase N-terminal C3F22_04130 PF00512 His Kinase A (phospho-acceptor) domain C3F22_04145 PF00293 NUDIX domain C3F22_04155 PF14814 Bifunctional transglycosylase second domain C3F22_04155 PF00905 Penicillin binding protein transpeptidase domain C3F22_04155 PF00912 Transglycosylase C3F22_04160 PF01513 ATP-NAD kinase C3F22_04165 PF07023 Protein of unknown function (DUF1315) C3F22_04170 PF02885 Glycosyl transferase family, helical bundle domain C3F22_04170 PF00591 Glycosyl transferase family, a/b domain C3F22_04175 PF00375 Sodium:dicarboxylate symporter family C3F22_04185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_04185 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_04185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_04190 PF01965 DJ-1/PfpI family C3F22_04195 PF01842 ACT domain C3F22_04195 PF01817 Chorismate mutase type II C3F22_04195 PF00800 Prephenate dehydratase C3F22_04200 PF00155 Aminotransferase class I and II C3F22_04205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F22_04225 PF03883 Peroxide stress protein YaaA C3F22_04235 PF00860 Permease family C3F22_04240 PF00962 Adenosine/AMP deaminase C3F22_04255 PF01351 Ribonuclease HII C3F22_04260 PF02599 Global regulator protein family C3F22_04265 PF13840 ACT domain C3F22_04265 PF01842 ACT domain C3F22_04265 PF00696 Amino acid kinase family C3F22_04270 PF01411 tRNA synthetases class II (A) C3F22_04270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F22_04270 PF02272 DHHA1 domain C3F22_04280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F22_04280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F22_04305 PF13393 Histidyl-tRNA synthetase C3F22_04310 PF00709 Adenylosuccinate synthetase C3F22_04330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_04335 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_04340 PF00768 D-alanyl-D-alanine carboxypeptidase C3F22_04340 PF07943 Penicillin-binding protein 5, C-terminal domain C3F22_04355 PF00576 HIUase/Transthyretin family C3F22_04375 PF00849 RNA pseudouridylate synthase C3F22_04380 PF13737 Transposase DDE domain C3F22_04400 PF00155 Aminotransferase class I and II C3F22_04405 PF01641 SelR domain C3F22_04410 PF00255 Glutathione peroxidase C3F22_04415 PF00155 Aminotransferase class I and II C3F22_04420 PF08335 GlnD PII-uridylyltransferase C3F22_04420 PF01966 HD domain C3F22_04420 PF01909 Nucleotidyltransferase domain C3F22_04425 PF02222 ATP-grasp domain C3F22_04435 PF05437 Branched-chain amino acid transport protein (AzlD) C3F22_04440 PF03591 AzlC protein C3F22_04450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F22_04450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F22_04455 PF06071 Protein of unknown function (DUF933) C3F22_04455 PF01926 50S ribosome-binding GTPase C3F22_04460 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_04465 PF00005 ABC transporter C3F22_04465 PF09383 NIL domain C3F22_04470 PF03180 NLPA lipoprotein C3F22_04475 PF00296 Luciferase-like monooxygenase C3F22_04485 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F22_04485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_04505 PF01709 Transcriptional regulator C3F22_04510 PF01553 Acyltransferase C3F22_04570 PF00449 Urease alpha-subunit, N-terminal domain C3F22_04570 PF01979 Amidohydrolase family C3F22_04590 PF00576 HIUase/Transthyretin family C3F22_04595 PF00860 Permease family C3F22_04600 PF03502 Nucleoside-specific channel-forming protein, Tsx C3F22_04605 PF04115 Ureidoglycolate lyase C3F22_04610 PF03561 Allantoicase repeat C3F22_04615 PF01494 FAD binding domain C3F22_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_04620 PF03466 LysR substrate binding domain C3F22_04625 PF00355 Rieske [2Fe-2S] domain C3F22_04650 PF02384 N-6 DNA Methylase C3F22_04675 PF07728 AAA domain (dynein-related subfamily) C3F22_04675 PF07728 AAA domain (dynein-related subfamily) C3F22_04675 PF12102 Domain of unknown function (DUF3578) C3F22_04675 PF12102 Domain of unknown function (DUF3578) C3F22_04685 PF00580 UvrD/REP helicase N-terminal domain C3F22_04685 PF13361 UvrD-like helicase C-terminal domain C3F22_04690 PF02463 RecF/RecN/SMC N terminal domain C3F22_04695 PF01695 IstB-like ATP binding protein C3F22_04700 PF00665 Integrase core domain C3F22_04700 PF08281 Sigma-70, region 4 C3F22_04740 PF00149 Calcineurin-like phosphoesterase C3F22_04775 PF04055 Radical SAM superfamily C3F22_04775 PF06968 Biotin and Thiamin Synthesis associated domain C3F22_04785 PF08331 Domain of unknown function (DUF1730) C3F22_04790 PF01256 Carbohydrate kinase C3F22_04790 PF03853 YjeF-related protein N-terminus C3F22_04795 PF00708 Acylphosphatase C3F22_04800 PF02075 Crossover junction endodeoxyribonuclease RuvC C3F22_04810 PF01810 LysE type translocator C3F22_04830 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_04830 PF13192 Thioredoxin domain C3F22_04840 PF01596 O-methyltransferase C3F22_04850 PF00578 AhpC/TSA family C3F22_04850 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F22_04855 PF00271 Helicase conserved C-terminal domain C3F22_04855 PF04408 Helicase associated domain (HA2) C3F22_04855 PF00270 DEAD/DEAH box helicase C3F22_04855 PF11898 Domain of unknown function (DUF3418) C3F22_04855 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C3F22_04860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3F22_04860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3F22_04875 PF14493 Helix-turn-helix domain C3F22_04875 PF05970 PIF1-like helicase C3F22_04880 PF04284 Protein of unknown function (DUF441) C3F22_04885 PF00849 RNA pseudouridylate synthase C3F22_04885 PF01479 S4 domain C3F22_04900 PF01479 S4 domain C3F22_04900 PF00849 RNA pseudouridylate synthase C3F22_04905 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C3F22_04910 PF01119 DNA mismatch repair protein, C-terminal domain C3F22_04910 PF08676 MutL C terminal dimerisation domain C3F22_04920 PF17209 Hfq protein C3F22_04925 PF00639 PPIC-type PPIASE domain C3F22_04925 PF09312 SurA N-terminal domain C3F22_04930 PF03968 OstA-like protein C3F22_04930 PF04453 LPS transport system D C3F22_04935 PF01636 Phosphotransferase enzyme family C3F22_04940 PF00483 Nucleotidyl transferase C3F22_04945 PF02527 rRNA small subunit methyltransferase G C3F22_04950 PF13614 AAA domain C3F22_04955 PF02195 ParB-like nuclease domain C3F22_04955 PF17762 HTH domain found in ParB protein C3F22_04960 PF01618 MotA/TolQ/ExbB proton channel family C3F22_04970 PF00664 ABC transporter transmembrane region C3F22_04970 PF00005 ABC transporter C3F22_04975 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C3F22_04980 PF02348 Cytidylyltransferase C3F22_04985 PF09115 DNA polymerase III, delta subunit, C terminal C3F22_04995 PF01026 TatD related DNase C3F22_05000 PF00440 Bacterial regulatory proteins, tetR family C3F22_05010 PF02501 Type II secretion system (T2SS), protein I C3F22_05010 PF07963 Prokaryotic N-terminal methylation motif C3F22_05015 PF11612 Type II secretion system (T2SS), protein J C3F22_05015 PF07963 Prokaryotic N-terminal methylation motif C3F22_05020 PF03934 Type II secretion system (T2SS), protein K C3F22_05030 PF03167 Uracil DNA glycosylase superfamily C3F22_05040 PF14437 MafB19-like deaminase C3F22_05050 PF02224 Cytidylate kinase C3F22_05055 PF00575 S1 RNA binding domain C3F22_05060 PF00216 Bacterial DNA-binding protein C3F22_05070 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C3F22_05080 PF03956 Lysine exporter LysO C3F22_05095 PF03969 AFG1-like ATPase C3F22_05100 PF01274 Malate synthase C3F22_05110 PF02796 Helix-turn-helix domain of resolvase C3F22_05110 PF00665 Integrase core domain C3F22_05115 PF01695 IstB-like ATP binding protein C3F22_05135 PF03741 Integral membrane protein TerC family C3F22_05135 PF03471 Transporter associated domain C3F22_05140 PF02110 Hydroxyethylthiazole kinase family C3F22_05155 PF01433 Peptidase family M1 domain C3F22_05155 PF11940 Domain of unknown function (DUF3458) Ig-like fold C3F22_05155 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C3F22_05165 PF00582 Universal stress protein family C3F22_05170 PF00582 Universal stress protein family C3F22_05175 PF00135 Carboxylesterase family C3F22_05180 PF00893 Small Multidrug Resistance protein C3F22_05185 PF03594 Benzoate membrane transport protein C3F22_05190 PF01810 LysE type translocator C3F22_05195 PF00923 Transaldolase/Fructose-6-phosphate aldolase C3F22_05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_05210 PF02803 Thiolase, C-terminal domain C3F22_05210 PF00108 Thiolase, N-terminal domain C3F22_05235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C3F22_05235 PF12169 DNA polymerase III subunits gamma and tau domain III C3F22_05235 PF12170 DNA polymerase III tau subunit V interacting with alpha C3F22_05240 PF03061 Thioesterase superfamily C3F22_05245 PF00465 Iron-containing alcohol dehydrogenase C3F22_05250 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3F22_05255 PF01565 FAD binding domain C3F22_05255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C3F22_05270 PF01645 Conserved region in glutamate synthase C3F22_05280 PF14403 Circularly permuted ATP-grasp type 2 C3F22_05290 PF01841 Transglutaminase-like superfamily C3F22_05290 PF08379 Bacterial transglutaminase-like N-terminal region C3F22_05305 PF00842 Alanine racemase, C-terminal domain C3F22_05305 PF01168 Alanine racemase, N-terminal domain C3F22_05310 PF00772 DnaB-like helicase N terminal domain C3F22_05310 PF03796 DnaB-like helicase C terminal domain C3F22_05315 PF01281 Ribosomal protein L9, N-terminal domain C3F22_05315 PF03948 Ribosomal protein L9, C-terminal domain C3F22_05320 PF01084 Ribosomal protein S18 C3F22_05325 PF01250 Ribosomal protein S6 C3F22_05335 PF01040 UbiA prenyltransferase family C3F22_05340 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C3F22_05345 PF00510 Cytochrome c oxidase subunit III C3F22_05350 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3F22_05355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3F22_05355 PF06481 COX Aromatic Rich Motif C3F22_05365 PF00391 PEP-utilising enzyme, mobile domain C3F22_05365 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C3F22_05365 PF02896 PEP-utilising enzyme, TIM barrel domain C3F22_05370 PF03618 Kinase/pyrophosphorylase C3F22_05375 PF00743 Flavin-binding monooxygenase-like C3F22_05395 PF13007 Transposase C of IS166 homeodomain C3F22_05395 PF03050 Transposase IS66 family C3F22_05395 PF13005 zinc-finger binding domain of transposase IS66 C3F22_05395 PF13817 IS66 C-terminal element C3F22_05400 PF00296 Luciferase-like monooxygenase C3F22_05415 PF03462 PCRF domain C3F22_05415 PF00472 RF-1 domain C3F22_05420 PF17827 PrmC N-terminal domain C3F22_05420 PF13847 Methyltransferase domain C3F22_05425 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_05430 PF09084 NMT1/THI5 like C3F22_05445 PF00106 short chain dehydrogenase C3F22_05455 PF00501 AMP-binding enzyme C3F22_05455 PF13193 AMP-binding enzyme C-terminal domain C3F22_05470 PF00899 ThiF family C3F22_05475 PF03109 ABC1 family C3F22_05480 PF02152 Dihydroneopterin aldolase C3F22_05495 PF03232 Ubiquinone biosynthesis protein COQ7 C3F22_05500 PF07690 Major Facilitator Superfamily C3F22_05505 PF07244 Surface antigen variable number repeat C3F22_05505 PF01103 Surface antigen C3F22_05505 PF17243 POTRA domain TamA domain 1 C3F22_05520 PF02601 Exonuclease VII, large subunit C3F22_05520 PF13742 OB-fold nucleic acid binding domain C3F22_05540 PF11791 Aconitate B N-terminal domain C3F22_05540 PF06434 Aconitate hydratase 2 N-terminus C3F22_05540 PF00330 Aconitase family (aconitate hydratase) C3F22_05550 PF13737 Transposase DDE domain C3F22_05560 PF03616 Sodium/glutamate symporter C3F22_05585 PF05525 Branched-chain amino acid transport protein C3F22_05590 PF00557 Metallopeptidase family M24 C3F22_05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_05595 PF03466 LysR substrate binding domain C3F22_05600 PF02146 Sir2 family C3F22_05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_05615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_05640 PF00117 Glutamine amidotransferase class-I C3F22_05640 PF06418 CTP synthase N-terminus C3F22_05645 PF00793 DAHP synthetase I family C3F22_05650 PF03952 Enolase, N-terminal domain C3F22_05650 PF00113 Enolase, C-terminal TIM barrel domain C3F22_05655 PF04977 Septum formation initiator C3F22_05660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C3F22_05665 PF01098 Cell cycle protein C3F22_05680 PF08173 Membrane bound YbgT-like protein C3F22_05685 PF02322 Cytochrome bd terminal oxidase subunit II C3F22_05690 PF01654 Cytochrome bd terminal oxidase subunit I C3F22_05700 PF00267 Gram-negative porin C3F22_05705 PF01230 HIT domain C3F22_05715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F22_05715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F22_05725 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F22_05730 PF02575 YbaB/EbfC DNA-binding family C3F22_05735 PF13662 Toprim domain C3F22_05735 PF02132 RecR protein C3F22_05740 PF01612 3'-5' exonuclease C3F22_05740 PF00570 HRDC domain C3F22_05745 PF05166 YcgL domain C3F22_05755 PF17862 AAA+ lid domain C3F22_05755 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_05755 PF01434 Peptidase family M41 C3F22_05765 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_05770 PF00478 IMP dehydrogenase / GMP reductase domain C3F22_05770 PF00571 CBS domain C3F22_05805 PF00675 Insulinase (Peptidase family M16) C3F22_05805 PF05193 Peptidase M16 inactive domain C3F22_05810 PF02881 SRP54-type protein, helical bundle domain C3F22_05810 PF00448 SRP54-type protein, GTPase domain C3F22_05825 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C3F22_05860 PF00583 Acetyltransferase (GNAT) family C3F22_05865 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_05865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_05865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_05890 PF03109 ABC1 family C3F22_05905 PF05175 Methyltransferase small domain C3F22_05910 PF01264 Chorismate synthase C3F22_05930 PF01266 FAD dependent oxidoreductase C3F22_05940 PF02542 YgbB family C3F22_05950 PF00793 DAHP synthetase I family C3F22_05955 PF01925 Sulfite exporter TauE/SafE C3F22_05960 PF02684 Lipid-A-disaccharide synthetase C3F22_05965 PF12833 Helix-turn-helix domain C3F22_05965 PF12852 Cupin C3F22_05970 PF00487 Fatty acid desaturase C3F22_05975 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_05980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_05980 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F22_05980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_05980 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_05985 PF02311 AraC-like ligand binding domain C3F22_05985 PF12833 Helix-turn-helix domain C3F22_05995 PF01381 Helix-turn-helix C3F22_06020 PF01654 Cytochrome bd terminal oxidase subunit I C3F22_06025 PF02322 Cytochrome bd terminal oxidase subunit II C3F22_06035 PF00565 Staphylococcal nuclease homologue C3F22_06050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_06050 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_06050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_06065 PF00106 short chain dehydrogenase C3F22_06095 PF13091 PLD-like domain C3F22_06100 PF00107 Zinc-binding dehydrogenase C3F22_06100 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_06110 PF00793 DAHP synthetase I family C3F22_06115 PF00437 Type II/IV secretion system protein C3F22_06120 PF00437 Type II/IV secretion system protein C3F22_06125 PF07690 Major Facilitator Superfamily C3F22_06130 PF01597 Glycine cleavage H-protein C3F22_06135 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F22_06135 PF12833 Helix-turn-helix domain C3F22_06140 PF00005 ABC transporter C3F22_06140 PF00664 ABC transporter transmembrane region C3F22_06150 PF00924 Mechanosensitive ion channel C3F22_06160 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_06160 PF13359 DDE superfamily endonuclease C3F22_06165 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) C3F22_06175 PF00375 Sodium:dicarboxylate symporter family C3F22_06180 PF13936 Helix-turn-helix domain C3F22_06180 PF00665 Integrase core domain C3F22_06185 PF00916 Sulfate permease family C3F22_06185 PF01740 STAS domain C3F22_06195 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_06200 PF00403 Heavy-metal-associated domain C3F22_06205 PF00376 MerR family regulatory protein C3F22_06205 PF09278 MerR, DNA binding C3F22_06215 PF00440 Bacterial regulatory proteins, tetR family C3F22_06215 PF08360 QacR-like protein, C-terminal region C3F22_06220 PF13936 Helix-turn-helix domain C3F22_06220 PF00665 Integrase core domain C3F22_06230 PF00753 Metallo-beta-lactamase superfamily C3F22_06230 PF14863 Alkyl sulfatase dimerisation C3F22_06230 PF14864 Alkyl sulfatase C-terminal C3F22_06235 PF13936 Helix-turn-helix domain C3F22_06235 PF00665 Integrase core domain C3F22_06250 PF02803 Thiolase, C-terminal domain C3F22_06250 PF00108 Thiolase, N-terminal domain C3F22_06255 PF15887 Putative zinc-binding metallo-peptidase C3F22_06255 PF10005 zinc-ribbon domain C3F22_06270 PF12146 Serine aminopeptidase, S33 C3F22_06275 PF02803 Thiolase, C-terminal domain C3F22_06275 PF00108 Thiolase, N-terminal domain C3F22_06280 PF01144 Coenzyme A transferase C3F22_06285 PF01144 Coenzyme A transferase C3F22_06290 PF03594 Benzoate membrane transport protein C3F22_06295 PF00106 short chain dehydrogenase C3F22_06300 PF00175 Oxidoreductase NAD-binding domain C3F22_06300 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_06300 PF00970 Oxidoreductase FAD-binding domain C3F22_06305 PF00866 Ring hydroxylating beta subunit C3F22_06310 PF00355 Rieske [2Fe-2S] domain C3F22_06310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F22_06315 PF04444 Catechol dioxygenase N terminus C3F22_06315 PF00775 Dioxygenase C3F22_06320 PF02426 Muconolactone delta-isomerase C3F22_06325 PF13378 Enolase C-terminal domain-like C3F22_06325 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3F22_06330 PF03466 LysR substrate binding domain C3F22_06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_06335 PF07690 Major Facilitator Superfamily C3F22_06345 PF00155 Aminotransferase class I and II C3F22_06345 PF00392 Bacterial regulatory proteins, gntR family C3F22_06355 PF00501 AMP-binding enzyme C3F22_06355 PF13193 AMP-binding enzyme C-terminal domain C3F22_06360 PF00970 Oxidoreductase FAD-binding domain C3F22_06360 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_06360 PF00175 Oxidoreductase NAD-binding domain C3F22_06365 PF00487 Fatty acid desaturase C3F22_06375 PF13419 Haloacid dehalogenase-like hydrolase C3F22_06405 PF02028 BCCT, betaine/carnitine/choline family transporter C3F22_06410 PF13977 BetI-type transcriptional repressor, C-terminal C3F22_06410 PF00440 Bacterial regulatory proteins, tetR family C3F22_06415 PF00171 Aldehyde dehydrogenase family C3F22_06420 PF05199 GMC oxidoreductase C3F22_06420 PF00732 GMC oxidoreductase C3F22_06440 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C3F22_06440 PF18381 YcaO cyclodehydratase C-terminal domain C3F22_06445 PF09339 IclR helix-turn-helix domain C3F22_06450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_06450 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_06450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_06455 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_06455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_06455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_06460 PF07690 Major Facilitator Superfamily C3F22_06465 PF01144 Coenzyme A transferase C3F22_06470 PF01144 Coenzyme A transferase C3F22_06480 PF07690 Major Facilitator Superfamily C3F22_06490 PF07690 Major Facilitator Superfamily C3F22_06495 PF00378 Enoyl-CoA hydratase/isomerase C3F22_06500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F22_06500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F22_06500 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain C3F22_06505 PF00108 Thiolase, N-terminal domain C3F22_06505 PF02803 Thiolase, C-terminal domain C3F22_06515 PF00596 Class II Aldolase and Adducin N-terminal domain C3F22_06520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_06525 PF00378 Enoyl-CoA hydratase/isomerase C3F22_06530 PF03060 Nitronate monooxygenase C3F22_06535 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_06535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_06535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_06535 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F22_06540 PF00561 alpha/beta hydrolase fold C3F22_06545 PF00743 Flavin-binding monooxygenase-like C3F22_06555 PF07690 Major Facilitator Superfamily C3F22_06560 PF07690 Major Facilitator Superfamily C3F22_06580 PF00005 ABC transporter C3F22_06590 PF04143 Sulphur transport C3F22_06605 PF00753 Metallo-beta-lactamase superfamily C3F22_06615 PF07732 Multicopper oxidase C3F22_06615 PF00394 Multicopper oxidase C3F22_06615 PF07731 Multicopper oxidase C3F22_06620 PF05275 Copper resistance protein B precursor (CopB) C3F22_06645 PF00593 TonB dependent receptor C3F22_06645 PF07715 TonB-dependent Receptor Plug Domain C3F22_06650 PF02560 Cyanate lyase C-terminal domain C3F22_06655 PF01226 Formate/nitrite transporter C3F22_06660 PF00069 Protein kinase domain C3F22_06665 PF07995 Glucose / Sorbosone dehydrogenase C3F22_06670 PF00149 Calcineurin-like phosphoesterase C3F22_06720 PF04632 Fusaric acid resistance protein family C3F22_06730 PF13533 Biotin-lipoyl like C3F22_06765 PF07715 TonB-dependent Receptor Plug Domain C3F22_06765 PF00593 TonB dependent receptor C3F22_06770 PF01011 PQQ enzyme repeat C3F22_06775 PF04966 Carbohydrate-selective porin, OprB family C3F22_06810 PF00005 ABC transporter C3F22_06815 PF02608 ABC transporter substrate-binding protein PnrA-like C3F22_06830 PF00355 Rieske [2Fe-2S] domain C3F22_06835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_06835 PF03466 LysR substrate binding domain C3F22_06845 PF01494 FAD binding domain C3F22_06850 PF03561 Allantoicase repeat C3F22_06855 PF04115 Ureidoglycolate lyase C3F22_06865 PF00860 Permease family C3F22_06870 PF00576 HIUase/Transthyretin family C3F22_06890 PF13737 Transposase DDE domain C3F22_06900 PF00449 Urease alpha-subunit, N-terminal domain C3F22_06900 PF01979 Amidohydrolase family C3F22_06905 PF00699 Urease beta subunit C3F22_06910 PF00547 Urease, gamma subunit C3F22_06915 PF01774 UreD urease accessory protein C3F22_06925 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3F22_06930 PF01730 UreF C3F22_06935 PF02814 UreE urease accessory protein, N-terminal domain C3F22_06935 PF05194 UreE urease accessory protein, C-terminal domain C3F22_06945 PF00005 ABC transporter C3F22_06950 PF00005 ABC transporter C3F22_06950 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F22_06960 PF02653 Branched-chain amino acid transport system / permease component C3F22_07040 PF07724 AAA domain (Cdc48 subfamily) C3F22_07040 PF17871 AAA lid domain C3F22_07040 PF10431 C-terminal, D2-small domain, of ClpB protein C3F22_07040 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_07065 PF12697 Alpha/beta hydrolase family C3F22_07095 PF00206 Lyase C3F22_07095 PF10415 Fumarase C C-terminus C3F22_07100 PF16363 GDP-mannose 4,6 dehydratase C3F22_07105 PF02635 DsrE/DsrF-like family C3F22_07140 PF04073 Aminoacyl-tRNA editing domain C3F22_07145 PF01220 Dehydroquinase class II C3F22_07150 PF00364 Biotin-requiring enzyme C3F22_07155 PF00289 Biotin carboxylase, N-terminal domain C3F22_07155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F22_07155 PF02785 Biotin carboxylase C-terminal domain C3F22_07165 PF17151 Periplasmic sensor domain C3F22_07165 PF00990 Diguanylate cyclase, GGDEF domain C3F22_07170 PF01425 Amidase C3F22_07175 PF12832 MFS_1 like family C3F22_07195 PF00717 Peptidase S24-like C3F22_07200 PF13438 Domain of unknown function (DUF4113) C3F22_07200 PF00817 impB/mucB/samB family C3F22_07200 PF11799 impB/mucB/samB family C-terminal domain C3F22_07205 PF01381 Helix-turn-helix C3F22_07210 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system C3F22_07230 PF00665 Integrase core domain C3F22_07230 PF13936 Helix-turn-helix domain C3F22_07240 PF02464 Competence-damaged protein C3F22_07240 PF00994 Probable molybdopterin binding domain C3F22_07240 PF18146 Damage-inducible protein CinA KH domain C3F22_07250 PF00285 Citrate synthase, C-terminal domain C3F22_07260 PF00440 Bacterial regulatory proteins, tetR family C3F22_07265 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_07270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F22_07270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F22_07280 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C3F22_07285 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_07285 PF10431 C-terminal, D2-small domain, of ClpB protein C3F22_07285 PF02861 Clp amino terminal domain, pathogenicity island component C3F22_07285 PF07724 AAA domain (Cdc48 subfamily) C3F22_07285 PF17871 AAA lid domain C3F22_07290 PF02617 ATP-dependent Clp protease adaptor protein ClpS C3F22_07300 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F22_07300 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F22_07310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C3F22_07315 PF00585 C-terminal regulatory domain of Threonine dehydratase C3F22_07315 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_07320 PF02254 TrkA-N domain C3F22_07320 PF02080 TrkA-C domain C3F22_07325 PF02386 Cation transport protein C3F22_07330 PF02253 Phospholipase A1 C3F22_07335 PF00675 Insulinase (Peptidase family M16) C3F22_07335 PF08367 Peptidase M16C associated C3F22_07335 PF05193 Peptidase M16 inactive domain C3F22_07345 PF00294 pfkB family carbohydrate kinase C3F22_07355 PF07290 Protein of unknown function (DUF1449) C3F22_07375 PF05698 Bacterial trigger factor protein (TF) C-terminus C3F22_07380 PF00216 Bacterial DNA-binding protein C3F22_07395 PF02082 Transcriptional regulator C3F22_07400 PF00266 Aminotransferase class-V C3F22_07405 PF01592 NifU-like N terminal domain C3F22_07410 PF01521 Iron-sulphur cluster biosynthesis C3F22_07415 PF07743 HSCB C-terminal oligomerisation domain C3F22_07415 PF00226 DnaJ domain C3F22_07420 PF00012 Hsp70 protein C3F22_07425 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_07430 PF00211 Adenylate and Guanylate cyclase catalytic domain C3F22_07440 PF03461 TRCF domain C3F22_07440 PF17757 UvrB interaction domain C3F22_07440 PF00271 Helicase conserved C-terminal domain C3F22_07440 PF00270 DEAD/DEAH box helicase C3F22_07440 PF02559 CarD-like/TRCF domain C3F22_07450 PF00206 Lyase C3F22_07450 PF10415 Fumarase C C-terminus C3F22_07455 PF00474 Sodium:solute symporter family C3F22_07460 PF01037 Lrp/AsnC ligand binding domain C3F22_07475 PF00171 Aldehyde dehydrogenase family C3F22_07475 PF14850 DNA-binding domain of Proline dehydrogenase C3F22_07475 PF01619 Proline dehydrogenase C3F22_07475 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3F22_07480 PF05958 tRNA (Uracil-5-)-methyltransferase C3F22_07495 PF01062 Bestrophin, RFP-TM, chloride channel C3F22_07500 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C3F22_07500 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F22_07505 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F22_07510 PF00149 Calcineurin-like phosphoesterase C3F22_07520 PF03328 HpcH/HpaI aldolase/citrate lyase family C3F22_07525 PF00881 Nitroreductase family C3F22_07545 PF01116 Fructose-bisphosphate aldolase class-II C3F22_07555 PF00162 Phosphoglycerate kinase C3F22_07565 PF02545 Maf-like protein C3F22_07570 PF08007 Cupin superfamily protein C3F22_07575 PF05231 MASE1 C3F22_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_07575 PF07730 Histidine kinase C3F22_07580 PF00072 Response regulator receiver domain C3F22_07580 PF00196 Bacterial regulatory proteins, luxR family C3F22_07590 PF03737 Aldolase/RraA C3F22_07595 PF13460 NAD(P)H-binding C3F22_07600 PF01649 Ribosomal protein S20 C3F22_07610 PF00459 Inositol monophosphatase family C3F22_07615 PF13419 Haloacid dehalogenase-like hydrolase C3F22_07620 PF01479 S4 domain C3F22_07625 PF00154 recA bacterial DNA recombination protein C3F22_07630 PF02631 RecX family C3F22_07650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C3F22_07650 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_07655 PF07977 FabA-like domain C3F22_07660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C3F22_07660 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_07670 PF01103 Surface antigen C3F22_07670 PF07244 Surface antigen variable number repeat C3F22_07675 PF17820 PDZ domain C3F22_07675 PF02163 Peptidase family M50 C3F22_07675 PF13180 PDZ domain C3F22_07680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C3F22_07680 PF13288 DXP reductoisomerase C-terminal domain C3F22_07680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C3F22_07690 PF01255 Putative undecaprenyl diphosphate synthase C3F22_07695 PF01765 Ribosome recycling factor C3F22_07700 PF00696 Amino acid kinase family C3F22_07705 PF00919 Uncharacterized protein family UPF0004 C3F22_07705 PF18693 TRAM domain C3F22_07705 PF04055 Radical SAM superfamily C3F22_07710 PF00989 PAS fold C3F22_07710 PF00512 His Kinase A (phospho-acceptor) domain C3F22_07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_07715 PF02954 Bacterial regulatory protein, Fis family C3F22_07715 PF00158 Sigma-54 interaction domain C3F22_07715 PF00072 Response regulator receiver domain C3F22_07725 PF01134 Glucose inhibited division protein A C3F22_07725 PF13932 GidA associated domain C3F22_07760 PF02954 Bacterial regulatory protein, Fis family C3F22_07765 PF01808 AICARFT/IMPCHase bienzyme C3F22_07765 PF02142 MGS-like domain C3F22_07770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C3F22_07770 PF02843 Phosphoribosylglycinamide synthetase, C domain C3F22_07770 PF02844 Phosphoribosylglycinamide synthetase, N domain C3F22_07780 PF13302 Acetyltransferase (GNAT) domain C3F22_07785 PF03180 NLPA lipoprotein C3F22_07790 PF09383 NIL domain C3F22_07790 PF00005 ABC transporter C3F22_07795 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_07800 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3F22_07800 PF14579 Helix-hairpin-helix motif C3F22_07800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3F22_07800 PF02811 PHP domain C3F22_07800 PF01336 OB-fold nucleic acid binding domain C3F22_07805 PF00588 SpoU rRNA Methylase family C3F22_07810 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_07825 PF01624 MutS domain I C3F22_07825 PF00488 MutS domain V C3F22_07825 PF05190 MutS family domain IV C3F22_07825 PF05188 MutS domain II C3F22_07825 PF05192 MutS domain III C3F22_07830 PF11953 Domain of unknown function (DUF3470) C3F22_07830 PF00037 4Fe-4S binding domain C3F22_07840 PF01596 O-methyltransferase C3F22_07855 PF01205 Uncharacterized protein family UPF0029 C3F22_07885 PF03050 Transposase IS66 family C3F22_07885 PF13817 IS66 C-terminal element C3F22_07885 PF13007 Transposase C of IS166 homeodomain C3F22_07885 PF13005 zinc-finger binding domain of transposase IS66 C3F22_07895 PF00005 ABC transporter C3F22_07895 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F22_07900 PF03968 OstA-like protein C3F22_07915 PF00571 CBS domain C3F22_07915 PF01380 SIS domain C3F22_07925 PF09190 DALR domain C3F22_07925 PF01406 tRNA synthetases class I (C) catalytic domain C3F22_07945 PF01545 Cation efflux family C3F22_07950 PF02798 Glutathione S-transferase, N-terminal domain C3F22_07950 PF14834 Glutathione S-transferase, C-terminal domain C3F22_07955 PF02540 NAD synthase C3F22_07955 PF00958 GMP synthase C terminal domain C3F22_07955 PF00117 Glutamine amidotransferase class-I C3F22_07960 PF04264 YceI-like domain C3F22_07975 PF02779 Transketolase, pyrimidine binding domain C3F22_07975 PF00456 Transketolase, thiamine diphosphate binding domain C3F22_07975 PF02780 Transketolase, C-terminal domain C3F22_07980 PF07963 Prokaryotic N-terminal methylation motif C3F22_07980 PF00114 Pilin (bacterial filament) C3F22_07985 PF00438 S-adenosylmethionine synthetase, N-terminal domain C3F22_07985 PF02772 S-adenosylmethionine synthetase, central domain C3F22_07985 PF02773 S-adenosylmethionine synthetase, C-terminal domain C3F22_07995 PF04143 Sulphur transport C3F22_08015 PF03060 Nitronate monooxygenase C3F22_08025 PF01207 Dihydrouridine synthase (Dus) C3F22_08030 PF07759 Protein of unknown function (DUF1615) C3F22_08040 PF00487 Fatty acid desaturase C3F22_08045 PF00970 Oxidoreductase FAD-binding domain C3F22_08045 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_08045 PF00175 Oxidoreductase NAD-binding domain C3F22_08050 PF00440 Bacterial regulatory proteins, tetR family C3F22_08055 PF00561 alpha/beta hydrolase fold C3F22_08055 PF08386 TAP-like protein C3F22_08065 PF00176 SNF2 family N-terminal domain C3F22_08065 PF18339 RapA N-terminal Tudor like domain 1 C3F22_08065 PF00271 Helicase conserved C-terminal domain C3F22_08065 PF12137 RNA polymerase recycling family C-terminal C3F22_08065 PF18337 RapA N-terminal Tudor like domain C3F22_08070 PF00849 RNA pseudouridylate synthase C3F22_08085 PF03928 Haem-degrading C3F22_08090 PF00202 Aminotransferase class-III C3F22_08095 PF02581 Thiamine monophosphate synthase C3F22_08110 PF01928 CYTH domain C3F22_08130 PF05193 Peptidase M16 inactive domain C3F22_08130 PF00675 Insulinase (Peptidase family M16) C3F22_08150 PF02567 Phenazine biosynthesis-like protein C3F22_08160 PF16123 Hydroxyacylglutathione hydrolase C-terminus C3F22_08160 PF00753 Metallo-beta-lactamase superfamily C3F22_08210 PF03793 PASTA domain C3F22_08210 PF00069 Protein kinase domain C3F22_08230 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_08240 PF00814 Glycoprotease family C3F22_08245 PF01165 Ribosomal protein S21 C3F22_08250 PF09424 Yqey-like protein C3F22_08260 PF01435 Peptidase family M48 C3F22_08265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_08265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F22_08280 PF00156 Phosphoribosyl transferase domain C3F22_08290 PF01180 Dihydroorotate dehydrogenase C3F22_08310 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3F22_08310 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3F22_08315 PF00881 Nitroreductase family C3F22_08325 PF00271 Helicase conserved C-terminal domain C3F22_08325 PF00270 DEAD/DEAH box helicase C3F22_08330 PF00313 'Cold-shock' DNA-binding domain C3F22_08340 PF04542 Sigma-70 region 2 C3F22_08340 PF00140 Sigma-70 factor, region 1.2 C3F22_08340 PF04545 Sigma-70, region 4 C3F22_08345 PF04241 Protein of unknown function (DUF423) C3F22_08355 PF05690 Thiazole biosynthesis protein ThiG C3F22_08370 PF02525 Flavodoxin-like fold C3F22_08375 PF14497 Glutathione S-transferase, C-terminal domain C3F22_08375 PF02798 Glutathione S-transferase, N-terminal domain C3F22_08380 PF01740 STAS domain C3F22_08380 PF00916 Sulfate permease family C3F22_08385 PF02390 Putative methyltransferase C3F22_08405 PF00501 AMP-binding enzyme C3F22_08405 PF13193 AMP-binding enzyme C-terminal domain C3F22_08410 PF17925 Tetracyclin repressor-like, C-terminal domain C3F22_08410 PF00440 Bacterial regulatory proteins, tetR family C3F22_08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_08415 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_08420 PF01039 Carboxyl transferase domain C3F22_08425 PF00378 Enoyl-CoA hydratase/isomerase C3F22_08430 PF00289 Biotin carboxylase, N-terminal domain C3F22_08430 PF02785 Biotin carboxylase C-terminal domain C3F22_08430 PF00364 Biotin-requiring enzyme C3F22_08430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F22_08435 PF00682 HMGL-like C3F22_08440 PF01144 Coenzyme A transferase C3F22_08445 PF01144 Coenzyme A transferase C3F22_08450 PF02667 Short chain fatty acid transporter C3F22_08455 PF01389 OmpA-like transmembrane domain C3F22_08455 PF00691 OmpA family C3F22_08460 PF01979 Amidohydrolase family C3F22_08465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F22_08465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F22_08480 PF01170 Putative RNA methylase family UPF0020 C3F22_08480 PF02926 THUMP domain C3F22_08480 PF10672 S-adenosylmethionine-dependent methyltransferase C3F22_08485 PF02861 Clp amino terminal domain, pathogenicity island component C3F22_08485 PF17871 AAA lid domain C3F22_08485 PF10431 C-terminal, D2-small domain, of ClpB protein C3F22_08485 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_08485 PF07724 AAA domain (Cdc48 subfamily) C3F22_08495 PF00248 Aldo/keto reductase family C3F22_08500 PF13545 Crp-like helix-turn-helix domain C3F22_08500 PF00027 Cyclic nucleotide-binding domain C3F22_08505 PF02566 OsmC-like protein C3F22_08510 PF00149 Calcineurin-like phosphoesterase C3F22_08515 PF03971 Monomeric isocitrate dehydrogenase C3F22_08525 PF13559 Domain of unknown function (DUF4129) C3F22_08525 PF11992 Domain of unknown function (DUF3488) C3F22_08525 PF01841 Transglutaminase-like superfamily C3F22_08535 PF17863 AAA lid domain C3F22_08535 PF07726 ATPase family associated with various cellular activities (AAA) C3F22_08540 PF04328 Selenoprotein, putative C3F22_08545 PF02554 Carbon starvation protein CstA C3F22_08545 PF13722 5TM C-terminal transporter carbon starvation CstA C3F22_08550 PF01132 Elongation factor P (EF-P) OB domain C3F22_08550 PF09285 Elongation factor P, C-terminal C3F22_08550 PF08207 Elongation factor P (EF-P) KOW-like domain C3F22_08555 PF04055 Radical SAM superfamily C3F22_08570 PF01197 Ribosomal protein L31 C3F22_08575 PF13593 SBF-like CPA transporter family (DUF4137) C3F22_08580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F22_08585 PF07690 Major Facilitator Superfamily C3F22_08590 PF13654 AAA domain C3F22_08590 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F22_08595 PF00462 Glutaredoxin C3F22_08600 PF00202 Aminotransferase class-III C3F22_08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_08605 PF03466 LysR substrate binding domain C3F22_08610 PF01476 LysM domain C3F22_08610 PF01551 Peptidase family M23 C3F22_08615 PF01975 Survival protein SurE C3F22_08630 PF07943 Penicillin-binding protein 5, C-terminal domain C3F22_08630 PF00768 D-alanyl-D-alanine carboxypeptidase C3F22_08635 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_08645 PF12848 ABC transporter C3F22_08645 PF16326 ABC transporter C-terminal domain C3F22_08645 PF00005 ABC transporter C3F22_08650 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_08660 PF00005 ABC transporter C3F22_08660 PF12848 ABC transporter C3F22_08665 PF01757 Acyltransferase family C3F22_08670 PF00293 NUDIX domain C3F22_08680 PF04356 Protein of unknown function (DUF489) C3F22_08685 PF00206 Lyase C3F22_08685 PF08328 Adenylosuccinate lyase C-terminal C3F22_08695 PF13006 Insertion element 4 transposase N-terminal C3F22_08695 PF01609 Transposase DDE domain C3F22_08710 PF01343 Peptidase family S49 C3F22_08710 PF08496 Peptidase family S49 N-terminal C3F22_08720 PF00005 ABC transporter C3F22_08725 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_08730 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_08735 PF12849 PBP superfamily domain C3F22_08740 PF00324 Amino acid permease C3F22_08745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F22_08745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F22_08745 PF00205 Thiamine pyrophosphate enzyme, central domain C3F22_08750 PF01037 Lrp/AsnC ligand binding domain C3F22_08755 PF00171 Aldehyde dehydrogenase family C3F22_08760 PF00355 Rieske [2Fe-2S] domain C3F22_08765 PF00282 Pyridoxal-dependent decarboxylase conserved domain C3F22_08770 PF00202 Aminotransferase class-III C3F22_08780 PF01569 PAP2 superfamily C3F22_08785 PF00696 Amino acid kinase family C3F22_08785 PF01472 PUA domain C3F22_08790 PF01018 GTP1/OBG C3F22_08790 PF01926 50S ribosome-binding GTPase C3F22_08805 PF01638 HxlR-like helix-turn-helix C3F22_08810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F22_08810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F22_08815 PF00892 EamA-like transporter family C3F22_08825 PF08212 Lipocalin-like domain C3F22_08830 PF17757 UvrB interaction domain C3F22_08830 PF12344 Ultra-violet resistance protein B C3F22_08830 PF02151 UvrB/uvrC motif C3F22_08830 PF04851 Type III restriction enzyme, res subunit C3F22_08830 PF00271 Helicase conserved C-terminal domain C3F22_08870 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3F22_08880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F22_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_08885 PF04055 Radical SAM superfamily C3F22_08890 PF09317 Domain of unknown function (DUF1974) C3F22_08890 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_08890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_08890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_08900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F22_08900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F22_08905 PF00860 Permease family C3F22_08910 PF01613 Flavin reductase like domain C3F22_08915 PF01042 Endoribonuclease L-PSP C3F22_08920 PF00857 Isochorismatase family C3F22_08925 PF00296 Luciferase-like monooxygenase C3F22_08930 PF12697 Alpha/beta hydrolase family C3F22_08940 PF13180 PDZ domain C3F22_08945 PF01784 NIF3 (NGG1p interacting factor 3) C3F22_08950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F22_08950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F22_08990 PF01040 UbiA prenyltransferase family C3F22_08995 PF04345 Chorismate lyase C3F22_09015 PF00117 Glutamine amidotransferase class-I C3F22_09020 PF00591 Glycosyl transferase family, a/b domain C3F22_09020 PF02885 Glycosyl transferase family, helical bundle domain C3F22_09025 PF00218 Indole-3-glycerol phosphate synthase C3F22_09055 PF00990 Diguanylate cyclase, GGDEF domain C3F22_09070 PF05675 Protein of unknown function (DUF817) C3F22_09075 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3F22_09085 PF17954 Quercetinase C-terminal cupin domain C3F22_09085 PF02678 Pirin C3F22_09115 PF00994 Probable molybdopterin binding domain C3F22_09115 PF18146 Damage-inducible protein CinA KH domain C3F22_09115 PF02464 Competence-damaged protein C3F22_09130 PF00313 'Cold-shock' DNA-binding domain C3F22_09135 PF03949 Malic enzyme, NAD binding domain C3F22_09135 PF00390 Malic enzyme, N-terminal domain C3F22_09155 PF02472 Biopolymer transport protein ExbD/TolR C3F22_09160 PF01618 MotA/TolQ/ExbB proton channel family C3F22_09165 PF02333 Phytase C3F22_09175 PF00990 Diguanylate cyclase, GGDEF domain C3F22_09180 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F22_09180 PF12833 Helix-turn-helix domain C3F22_09190 PF00245 Alkaline phosphatase C3F22_09195 PF00245 Alkaline phosphatase C3F22_09215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_09215 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_09225 PF00764 Arginosuccinate synthase C3F22_09230 PF08448 PAS fold C3F22_09230 PF00990 Diguanylate cyclase, GGDEF domain C3F22_09235 PF01979 Amidohydrolase family C3F22_09240 PF00929 Exonuclease C3F22_09260 PF00324 Amino acid permease C3F22_09295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_09295 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_09300 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F22_09300 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_09305 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_09310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F22_09315 PF01476 LysM domain C3F22_09315 PF01464 Transglycosylase SLT domain C3F22_09320 PF00929 Exonuclease C3F22_09330 PF00293 NUDIX domain C3F22_09330 PF09297 NADH pyrophosphatase zinc ribbon domain C3F22_09340 PF04972 BON domain C3F22_09345 PF02021 Uncharacterised protein family UPF0102 C3F22_09350 PF04348 LppC putative lipoprotein C3F22_09355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F22_09365 PF01494 FAD binding domain C3F22_09370 PF01494 FAD binding domain C3F22_09380 PF13737 Transposase DDE domain C3F22_09390 PF01757 Acyltransferase family C3F22_09400 PF04070 Domain of unknown function (DUF378) C3F22_09405 PF05195 Aminopeptidase P, N-terminal domain C3F22_09405 PF00557 Metallopeptidase family M24 C3F22_09410 PF03695 Uncharacterised protein family (UPF0149) C3F22_09430 PF01812 5-formyltetrahydrofolate cyclo-ligase family C3F22_09435 PF02190 ATP-dependent protease La (LON) substrate-binding domain C3F22_09435 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F22_09435 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_09440 PF04389 Peptidase family M28 C3F22_09445 PF02590 Predicted SPOUT methyltransferase C3F22_09450 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3F22_09460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3F22_09460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3F22_09465 PF04060 Putative Fe-S cluster C3F22_09470 PF00633 Helix-hairpin-helix motif C3F22_09470 PF10576 Iron-sulfur binding domain of endonuclease III C3F22_09470 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F22_09480 PF05191 Adenylate kinase, active site lid C3F22_09495 PF00905 Penicillin binding protein transpeptidase domain C3F22_09495 PF03717 Penicillin-binding Protein dimerisation domain C3F22_09550 PF00118 TCP-1/cpn60 chaperonin family C3F22_09555 PF00166 Chaperonin 10 Kd subunit C3F22_09565 PF02142 MGS-like domain C3F22_09565 PF00781 Diacylglycerol kinase catalytic domain C3F22_09575 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C3F22_09575 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C3F22_09580 PF00083 Sugar (and other) transporter C3F22_09595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3F22_09595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3F22_09620 PF00698 Acyl transferase domain C3F22_09620 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F22_09620 PF16197 Ketoacyl-synthetase C-terminal extension C3F22_09620 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F22_09620 PF08659 KR domain C3F22_09620 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_09620 PF00550 Phosphopantetheine attachment site C3F22_09620 PF14765 Polyketide synthase dehydratase C3F22_09630 PF00085 Thioredoxin C3F22_09655 PF00009 Elongation factor Tu GTP binding domain C3F22_09660 PF01507 Phosphoadenosine phosphosulfate reductase family C3F22_09675 PF15975 Flotillin C3F22_09675 PF01145 SPFH domain / Band 7 family C3F22_09680 PF02629 CoA binding domain C3F22_09680 PF00549 CoA-ligase C3F22_09685 PF00549 CoA-ligase C3F22_09685 PF08442 ATP-grasp domain C3F22_09690 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_09690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F22_09695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F22_09695 PF00364 Biotin-requiring enzyme C3F22_09695 PF02817 e3 binding domain C3F22_09700 PF02779 Transketolase, pyrimidine binding domain C3F22_09700 PF16870 2-oxoglutarate dehydrogenase C-terminal C3F22_09700 PF16078 2-oxoglutarate dehydrogenase N-terminus C3F22_09700 PF00676 Dehydrogenase E1 component C3F22_09705 PF13085 2Fe-2S iron-sulfur cluster binding domain C3F22_09710 PF02910 Fumarate reductase flavoprotein C-term C3F22_09710 PF00890 FAD binding domain C3F22_09715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F22_09720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F22_09725 PF00285 Citrate synthase, C-terminal domain C3F22_09735 PF00795 Carbon-nitrogen hydrolase C3F22_09735 PF02540 NAD synthase C3F22_09750 PF00582 Universal stress protein family C3F22_09755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F22_09775 PF00665 Integrase core domain C3F22_09775 PF13936 Helix-turn-helix domain C3F22_09795 PF00665 Integrase core domain C3F22_09795 PF02796 Helix-turn-helix domain of resolvase C3F22_09800 PF01695 IstB-like ATP binding protein C3F22_09810 PF00872 Transposase, Mutator family C3F22_09820 PF04228 Putative neutral zinc metallopeptidase C3F22_09825 PF05661 Protein of unknown function (DUF808) C3F22_09830 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_09835 PF00579 tRNA synthetases class I (W and Y) C3F22_09840 PF14052 Capsule assembly protein Wzi C3F22_09850 PF01336 OB-fold nucleic acid binding domain C3F22_09850 PF00152 tRNA synthetases class II (D, K and N) C3F22_09860 PF00156 Phosphoribosyl transferase domain C3F22_09865 PF00301 Rubredoxin C3F22_09870 PF18113 Rubredoxin binding C-terminal domain C3F22_09870 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_09875 PF00561 alpha/beta hydrolase fold C3F22_09880 PF03466 LysR substrate binding domain C3F22_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_09890 PF02503 Polyphosphate kinase middle domain C3F22_09890 PF13089 Polyphosphate kinase N-terminal domain C3F22_09890 PF17941 Polyphosphate kinase C-terminal domain 1 C3F22_09890 PF13090 Polyphosphate kinase C-terminal domain 2 C3F22_09900 PF00912 Transglycosylase C3F22_09905 PF01694 Rhomboid family C3F22_09915 PF00005 ABC transporter C3F22_09920 PF13472 GDSL-like Lipase/Acylhydrolase family C3F22_09925 PF00484 Carbonic anhydrase C3F22_09930 PF00561 alpha/beta hydrolase fold C3F22_09945 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_09950 PF00593 TonB dependent receptor C3F22_09950 PF07715 TonB-dependent Receptor Plug Domain C3F22_09955 PF01106 NifU-like domain C3F22_09955 PF01521 Iron-sulphur cluster biosynthesis C3F22_09965 PF01497 Periplasmic binding protein C3F22_09975 PF01384 Phosphate transporter family C3F22_09980 PF00809 Pterin binding enzyme C3F22_09980 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3F22_09980 PF02310 B12 binding domain C3F22_09980 PF02607 B12 binding domain C3F22_09980 PF02574 Homocysteine S-methyltransferase C3F22_10000 PF00872 Transposase, Mutator family C3F22_10020 PF02733 Dak1 domain C3F22_10025 PF04960 Glutaminase C3F22_10040 PF00133 tRNA synthetases class I (I, L, M and V) C3F22_10040 PF10458 Valyl tRNA synthetase tRNA binding arm C3F22_10040 PF08264 Anticodon-binding domain of tRNA C3F22_10050 PF04480 Protein of unknown function (DUF559) C3F22_10060 PF00194 Eukaryotic-type carbonic anhydrase C3F22_10065 PF04239 Protein of unknown function (DUF421) C3F22_10070 PF13419 Haloacid dehalogenase-like hydrolase C3F22_10075 PF00267 Gram-negative porin C3F22_10090 PF01734 Patatin-like phospholipase C3F22_10100 PF01145 SPFH domain / Band 7 family C3F22_10105 PF00474 Sodium:solute symporter family C3F22_10110 PF00348 Polyprenyl synthetase C3F22_10115 PF04303 PrpF protein C3F22_10120 PF00324 Amino acid permease C3F22_10145 PF01507 Phosphoadenosine phosphosulfate reductase family C3F22_10150 PF06974 Protein of unknown function (DUF1298) C3F22_10150 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C3F22_10155 PF10150 Ribonuclease E/G family C3F22_10155 PF00575 S1 RNA binding domain C3F22_10160 PF02545 Maf-like protein C3F22_10165 PF04093 rod shape-determining protein MreD C3F22_10170 PF04085 rod shape-determining protein MreC C3F22_10180 PF02686 Glu-tRNAGln amidotransferase C subunit C3F22_10185 PF01425 Amidase C3F22_10190 PF02637 GatB domain C3F22_10190 PF02934 GatB/GatE catalytic domain C3F22_10210 PF00892 EamA-like transporter family C3F22_10220 PF05649 Peptidase family M13 C3F22_10220 PF01431 Peptidase family M13 C3F22_10225 PF01431 Peptidase family M13 C3F22_10225 PF05649 Peptidase family M13 C3F22_10235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C3F22_10235 PF01348 Type II intron maturase C3F22_10245 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_10250 PF05992 SbmA/BacA-like family C3F22_10260 PF00872 Transposase, Mutator family C3F22_10265 PF02358 Trehalose-phosphatase C3F22_10270 PF00982 Glycosyltransferase family 20 C3F22_10275 PF07690 Major Facilitator Superfamily C3F22_10285 PF05401 Nodulation protein S (NodS) C3F22_10305 PF00199 Catalase C3F22_10305 PF18011 C-terminal domain found in long catalases C3F22_10305 PF06628 Catalase-related immune-responsive C3F22_10310 PF00210 Ferritin-like domain C3F22_10320 PF13737 Transposase DDE domain C3F22_10330 PF00990 Diguanylate cyclase, GGDEF domain C3F22_10330 PF00563 EAL domain C3F22_10330 PF03707 Bacterial signalling protein N terminal repeat C3F22_10335 PF00005 ABC transporter C3F22_10335 PF03459 TOBE domain C3F22_10340 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_10350 PF00994 Probable molybdopterin binding domain C3F22_10350 PF03454 MoeA C-terminal region (domain IV) C3F22_10350 PF03453 MoeA N-terminal region (domain I and II) C3F22_10355 PF00994 Probable molybdopterin binding domain C3F22_10355 PF01967 MoaC family C3F22_10360 PF02391 MoaE protein C3F22_10370 PF06463 Molybdenum Cofactor Synthesis C C3F22_10370 PF04055 Radical SAM superfamily C3F22_10375 PF12804 MobA-like NTP transferase domain C3F22_10380 PF04324 BFD-like [2Fe-2S] binding domain C3F22_10380 PF01568 Molydopterin dinucleotide binding domain C3F22_10380 PF00384 Molybdopterin oxidoreductase C3F22_10380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F22_10385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F22_10385 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F22_10385 PF04324 BFD-like [2Fe-2S] binding domain C3F22_10385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F22_10385 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_10390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F22_10390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F22_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_10390 PF04324 BFD-like [2Fe-2S] binding domain C3F22_10390 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F22_10395 PF07690 Major Facilitator Superfamily C3F22_10400 PF13737 Transposase DDE domain C3F22_10405 PF14659 Phage integrase, N-terminal SAM-like domain C3F22_10405 PF00589 Phage integrase family C3F22_10405 PF13356 Arm DNA-binding domain C3F22_10450 PF13005 zinc-finger binding domain of transposase IS66 C3F22_10450 PF13007 Transposase C of IS166 homeodomain C3F22_10450 PF03050 Transposase IS66 family C3F22_10450 PF13817 IS66 C-terminal element C3F22_10465 PF00436 Single-strand binding protein family C3F22_10495 PF10548 P22AR C-terminal domain C3F22_10495 PF02498 BRO family, N-terminal domain C3F22_10510 PF02796 Helix-turn-helix domain of resolvase C3F22_10510 PF00665 Integrase core domain C3F22_10515 PF01695 IstB-like ATP binding protein C3F22_10535 PF13356 Arm DNA-binding domain C3F22_10535 PF00589 Phage integrase family C3F22_10545 PF00171 Aldehyde dehydrogenase family C3F22_10555 PF07690 Major Facilitator Superfamily C3F22_10560 PF00920 Dehydratase family C3F22_10565 PF00392 Bacterial regulatory proteins, gntR family C3F22_10565 PF07729 FCD domain C3F22_10570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_10570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F22_10580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F22_10580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F22_10585 PF07690 Major Facilitator Superfamily C3F22_10590 PF01370 NAD dependent epimerase/dehydratase family C3F22_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_10600 PF03466 LysR substrate binding domain C3F22_10610 PF00920 Dehydratase family C3F22_10615 PF00171 Aldehyde dehydrogenase family C3F22_10620 PF03573 outer membrane porin, OprD family C3F22_10640 PF13784 Fic/DOC family N-terminal C3F22_10640 PF02661 Fic/DOC family C3F22_10645 PF02616 Segregation and condensation protein ScpA C3F22_10675 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_10675 PF17862 AAA+ lid domain C3F22_10675 PF06480 FtsH Extracellular C3F22_10675 PF01434 Peptidase family M41 C3F22_10680 PF00012 Hsp70 protein C3F22_10695 PF00665 Integrase core domain C3F22_10695 PF13936 Helix-turn-helix domain C3F22_10705 PF13340 Putative transposase of IS4/5 family (DUF4096) C3F22_10710 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C3F22_10710 PF12008 Type I restriction and modification enzyme - subunit R C terminal C3F22_10710 PF18766 SWI2/SNF2 ATPase C3F22_10730 PF01420 Type I restriction modification DNA specificity domain C3F22_10735 PF12161 HsdM N-terminal domain C3F22_10735 PF02384 N-6 DNA Methylase C3F22_10765 PF08645 Polynucleotide kinase 3 phosphatase C3F22_10765 PF00475 Imidazoleglycerol-phosphate dehydratase C3F22_10780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3F22_10780 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3F22_10785 PF07690 Major Facilitator Superfamily C3F22_10790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F22_10790 PF00529 HlyD membrane-fusion protein of T1SS C3F22_10795 PF03061 Thioesterase superfamily C3F22_10800 PF00490 Delta-aminolevulinic acid dehydratase C3F22_10805 PF01266 FAD dependent oxidoreductase C3F22_10810 PF08338 Domain of unknown function (DUF1731) C3F22_10810 PF01370 NAD dependent epimerase/dehydratase family C3F22_10820 PF12320 Type 5 capsule protein repressor C-terminal domain C3F22_10820 PF00149 Calcineurin-like phosphoesterase C3F22_10835 PF01168 Alanine racemase, N-terminal domain C3F22_10840 PF00437 Type II/IV secretion system protein C3F22_10845 PF00437 Type II/IV secretion system protein C3F22_10850 PF01475 Ferric uptake regulator family C3F22_10855 PF04355 SmpA / OmlA family C3F22_10860 PF03658 RnfH family Ubiquitin C3F22_10870 PF01814 Hemerythrin HHE cation binding domain C3F22_10875 PF13230 Glutamine amidotransferases class-II C3F22_10880 PF00696 Amino acid kinase family C3F22_10885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F22_10885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F22_10885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F22_10885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F22_10910 PF00692 dUTPase C3F22_10915 PF13361 UvrD-like helicase C-terminal domain C3F22_10915 PF00580 UvrD/REP helicase N-terminal domain C3F22_10920 PF00691 OmpA family C3F22_10920 PF13488 Glycine zipper C3F22_10925 PF01553 Acyltransferase C3F22_10935 PF03775 Septum formation inhibitor MinC, C-terminal domain C3F22_10940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3F22_10945 PF03776 Septum formation topological specificity factor MinE C3F22_10955 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C3F22_10955 PF17854 FtsK alpha domain C3F22_10955 PF09397 Ftsk gamma domain C3F22_10955 PF01580 FtsK/SpoIIIE family C3F22_10965 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_10970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C3F22_10975 PF04376 Arginine-tRNA-protein transferase, N terminus C3F22_10975 PF04377 Arginine-tRNA-protein transferase, C terminus C3F22_10980 PF00583 Acetyltransferase (GNAT) family C3F22_10990 PF03144 Elongation factor Tu domain 2 C3F22_10990 PF00009 Elongation factor Tu GTP binding domain C3F22_10990 PF03143 Elongation factor Tu C-terminal domain C3F22_10995 PF00009 Elongation factor Tu GTP binding domain C3F22_10995 PF14492 Elongation Factor G, domain II C3F22_10995 PF00679 Elongation factor G C-terminus C3F22_10995 PF03144 Elongation factor Tu domain 2 C3F22_10995 PF03764 Elongation factor G, domain IV C3F22_11000 PF00177 Ribosomal protein S7p/S5e C3F22_11005 PF00164 Ribosomal protein S12/S23 C3F22_11015 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F22_11015 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F22_11025 PF00324 Amino acid permease C3F22_11030 PF01042 Endoribonuclease L-PSP C3F22_11035 PF00842 Alanine racemase, C-terminal domain C3F22_11035 PF01168 Alanine racemase, N-terminal domain C3F22_11040 PF01266 FAD dependent oxidoreductase C3F22_11045 PF01037 Lrp/AsnC ligand binding domain C3F22_11050 PF04972 BON domain C3F22_11050 PF01476 LysM domain C3F22_11055 PF00550 Phosphopantetheine attachment site C3F22_11065 PF00698 Acyl transferase domain C3F22_11070 PF01783 Ribosomal L32p protein family C3F22_11075 PF02620 Large ribosomal RNA subunit accumulation protein YceD C3F22_11080 PF04315 Elongation factor P hydroxylase C3F22_11085 PF01300 Telomere recombination C3F22_11100 PF02616 Segregation and condensation protein ScpA C3F22_11105 PF04079 Segregation and condensation complex subunit ScpB C3F22_11110 PF00849 RNA pseudouridylate synthase C3F22_11110 PF01479 S4 domain C3F22_11120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F22_11120 PF00005 ABC transporter C3F22_11125 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F22_11125 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_11130 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_11135 PF01432 Peptidase family M3 C3F22_11145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F22_11150 PF00593 TonB dependent receptor C3F22_11150 PF07715 TonB-dependent Receptor Plug Domain C3F22_11155 PF03544 Gram-negative bacterial TonB protein C-terminal C3F22_11160 PF01618 MotA/TolQ/ExbB proton channel family C3F22_11165 PF02472 Biopolymer transport protein ExbD/TolR C3F22_11170 PF02472 Biopolymer transport protein ExbD/TolR C3F22_11175 PF00210 Ferritin-like domain C3F22_11180 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family C3F22_11185 PF05971 RNA methyltransferase C3F22_11190 PF12826 Helix-hairpin-helix motif C3F22_11190 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3F22_11190 PF00533 BRCA1 C Terminus (BRCT) domain C3F22_11190 PF01653 NAD-dependent DNA ligase adenylation domain C3F22_11190 PF03120 NAD-dependent DNA ligase OB-fold domain C3F22_11200 PF06470 SMC proteins Flexible Hinge Domain C3F22_11200 PF02463 RecF/RecN/SMC N terminal domain C3F22_11215 PF01925 Sulfite exporter TauE/SafE C3F22_11220 PF02237 Biotin protein ligase C terminal domain C3F22_11220 PF03099 Biotin/lipoate A/B protein ligase family C3F22_11220 PF08279 HTH domain C3F22_11225 PF03309 Type III pantothenate kinase C3F22_11230 PF06821 Serine hydrolase C3F22_11240 PF02978 Signal peptide binding domain C3F22_11240 PF02881 SRP54-type protein, helical bundle domain C3F22_11240 PF00448 SRP54-type protein, GTPase domain C3F22_11250 PF08241 Methyltransferase domain C3F22_11255 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_11260 PF07848 PaaX-like protein C3F22_11260 PF08223 PaaX-like protein C-terminal domain C3F22_11265 PF14535 AMP-binding enzyme C-terminal domain C3F22_11265 PF00501 AMP-binding enzyme C3F22_11270 PF02803 Thiolase, C-terminal domain C3F22_11270 PF00108 Thiolase, N-terminal domain C3F22_11275 PF00378 Enoyl-CoA hydratase/isomerase C3F22_11280 PF00175 Oxidoreductase NAD-binding domain C3F22_11280 PF00970 Oxidoreductase FAD-binding domain C3F22_11280 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_11285 PF01883 Iron-sulfur cluster assembly protein C3F22_11290 PF05138 Phenylacetic acid catabolic protein C3F22_11295 PF06243 Phenylacetic acid degradation B C3F22_11300 PF05138 Phenylacetic acid catabolic protein C3F22_11305 PF01575 MaoC like domain C3F22_11305 PF00171 Aldehyde dehydrogenase family C3F22_11310 PF07690 Major Facilitator Superfamily C3F22_11320 PF01207 Dihydrouridine synthase (Dus) C3F22_11325 PF08378 Nuclease-related domain C3F22_11330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3F22_11330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F22_11335 PF00893 Small Multidrug Resistance protein C3F22_11340 PF00834 Ribulose-phosphate 3 epimerase family C3F22_11360 PF00756 Putative esterase C3F22_11370 PF04445 Putative SAM-dependent methyltransferase C3F22_11375 PF02673 Bacitracin resistance protein BacA C3F22_11380 PF00814 Glycoprotease family C3F22_11390 PF00293 NUDIX domain C3F22_11470 PF04715 Anthranilate synthase component I, N terminal region C3F22_11470 PF00425 chorismate binding enzyme C3F22_11475 PF00155 Aminotransferase class I and II C3F22_11480 PF00815 Histidinol dehydrogenase C3F22_11485 PF01634 ATP phosphoribosyltransferase C3F22_11490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F22_11495 PF01722 BolA-like protein C3F22_11500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C3F22_11505 PF00309 Sigma-54 factor, Activator interacting domain (AID) C3F22_11505 PF04552 Sigma-54, DNA binding domain C3F22_11505 PF04963 Sigma-54 factor, core binding domain C3F22_11570 PF02445 Quinolinate synthetase A protein C3F22_11575 PF01960 ArgJ family C3F22_11585 PF02810 SEC-C motif C3F22_11585 PF07517 SecA DEAD-like domain C3F22_11585 PF01043 SecA preprotein cross-linking domain C3F22_11585 PF07516 SecA Wing and Scaffold domain C3F22_11590 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F22_11590 PF00578 AhpC/TSA family C3F22_11605 PF08245 Mur ligase middle domain C3F22_11605 PF02875 Mur ligase family, glutamate ligase domain C3F22_11610 PF01039 Carboxyl transferase domain C3F22_11615 PF00290 Tryptophan synthase alpha chain C3F22_11640 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_11645 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C3F22_11650 PF07715 TonB-dependent Receptor Plug Domain C3F22_11650 PF00593 TonB dependent receptor C3F22_11655 PF01923 Cobalamin adenosyltransferase C3F22_11670 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C3F22_11675 PF04237 YjbR C3F22_11685 PF00324 Amino acid permease C3F22_11695 PF00072 Response regulator receiver domain C3F22_11695 PF00486 Transcriptional regulatory protein, C terminal C3F22_11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_11700 PF00512 His Kinase A (phospho-acceptor) domain C3F22_11700 PF00672 HAMP domain C3F22_11710 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_11710 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F22_11710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_11710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_11715 PF02770 Acyl-CoA dehydrogenase, middle domain C3F22_11715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_11715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F22_11715 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F22_11725 PF06146 Phosphate-starvation-inducible E C3F22_11750 PF00593 TonB dependent receptor C3F22_11750 PF07715 TonB-dependent Receptor Plug Domain C3F22_11760 PF00152 tRNA synthetases class II (D, K and N) C3F22_11760 PF02938 GAD domain C3F22_11760 PF01336 OB-fold nucleic acid binding domain C3F22_11800 PF17102 Stealth protein CR3, conserved region 3 C3F22_11800 PF17101 Stealth protein CR1, conserved region 1 C3F22_11800 PF11380 Stealth protein CR2, conserved region 2 C3F22_11810 PF01063 Amino-transferase class IV C3F22_11815 PF08335 GlnD PII-uridylyltransferase C3F22_11815 PF03710 Glutamate-ammonia ligase adenylyltransferase C3F22_11820 PF00512 His Kinase A (phospho-acceptor) domain C3F22_11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_11825 PF04751 Protein of unknown function (DUF615) C3F22_11830 PF00381 PTS HPr component phosphorylation site C3F22_11835 PF03668 P-loop ATPase protein family C3F22_11840 PF02569 Pantoate-beta-alanine ligase C3F22_11845 PF02548 Ketopantoate hydroxymethyltransferase C3F22_11850 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3F22_11855 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F22_11855 PF12626 Polymerase A arginine-rich C-terminus C3F22_11855 PF01743 Poly A polymerase head domain C3F22_11860 PF10531 SLBB domain C3F22_11865 PF03819 MazG nucleotide pyrophosphohydrolase domain C3F22_11870 PF00106 short chain dehydrogenase C3F22_11880 PF01385 Probable transposase C3F22_11880 PF12323 Helix-turn-helix domain C3F22_11880 PF07282 Putative transposase DNA-binding domain C3F22_11885 PF01797 Transposase IS200 like C3F22_11900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C3F22_11900 PF01926 50S ribosome-binding GTPase C3F22_11905 PF13360 PQQ-like domain C3F22_11915 PF03129 Anticodon binding domain C3F22_11915 PF13393 Histidyl-tRNA synthetase C3F22_11920 PF04551 GcpE protein C3F22_11925 PF13464 Domain of unknown function (DUF4115) C3F22_11935 PF04055 Radical SAM superfamily C3F22_11940 PF00334 Nucleoside diphosphate kinase C3F22_11945 PF04384 Iron-sulphur cluster assembly C3F22_11950 PF01569 PAP2 superfamily C3F22_11960 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3F22_11960 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C3F22_11965 PF10369 Small subunit of acetolactate synthase C3F22_11970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F22_11970 PF00205 Thiamine pyrophosphate enzyme, central domain C3F22_11970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F22_11980 PF13936 Helix-turn-helix domain C3F22_11980 PF00665 Integrase core domain C3F22_11995 PF09334 tRNA synthetases class I (M) C3F22_11995 PF13603 Leucyl-tRNA synthetase, Domain 2 C3F22_11995 PF08264 Anticodon-binding domain of tRNA C3F22_11995 PF00133 tRNA synthetases class I (I, L, M and V) C3F22_12015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F22_12020 PF12704 MacB-like periplasmic core domain C3F22_12020 PF00005 ABC transporter C3F22_12020 PF02687 FtsX-like permease family C3F22_12025 PF02321 Outer membrane efflux protein C3F22_12035 PF00899 ThiF family C3F22_12045 PF00929 Exonuclease C3F22_12050 PF03193 RsgA GTPase C3F22_12060 PF00462 Glutaredoxin C3F22_12065 PF02556 Preprotein translocase subunit SecB C3F22_12080 PF01026 TatD related DNase C3F22_12095 PF16658 Class II release factor RF3, C-terminal domain C3F22_12095 PF00009 Elongation factor Tu GTP binding domain C3F22_12095 PF03144 Elongation factor Tu domain 2 C3F22_12100 PF02661 Fic/DOC family C3F22_12100 PF13784 Fic/DOC family N-terminal C3F22_12115 PF13737 Transposase DDE domain C3F22_12125 PF00563 EAL domain C3F22_12125 PF01590 GAF domain C3F22_12125 PF00360 Phytochrome region C3F22_12125 PF00990 Diguanylate cyclase, GGDEF domain C3F22_12170 PF03707 Bacterial signalling protein N terminal repeat C3F22_12170 PF00563 EAL domain C3F22_12170 PF00990 Diguanylate cyclase, GGDEF domain C3F22_12175 PF17804 Tail specific protease N-terminal domain C3F22_12175 PF00595 PDZ domain C3F22_12175 PF03572 Peptidase family S41 C3F22_12175 PF11818 C-terminal domain of tail specific protease (DUF3340) C3F22_12180 PF00933 Glycosyl hydrolase family 3 N terminal domain C3F22_12195 PF00171 Aldehyde dehydrogenase family C3F22_12200 PF00871 Acetokinase family C3F22_12205 PF01515 Phosphate acetyl/butaryl transferase C3F22_12205 PF07085 DRTGG domain C3F22_12215 PF05683 Fumarase C-terminus C3F22_12215 PF05681 Fumarate hydratase (Fumerase) C3F22_12225 PF10431 C-terminal, D2-small domain, of ClpB protein C3F22_12225 PF06689 ClpX C4-type zinc finger C3F22_12225 PF07724 AAA domain (Cdc48 subfamily) C3F22_12230 PF00574 Clp protease C3F22_12235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_12235 PF05697 Bacterial trigger factor protein (TF) C3F22_12235 PF05698 Bacterial trigger factor protein (TF) C-terminus C3F22_12240 PF07715 TonB-dependent Receptor Plug Domain C3F22_12240 PF00593 TonB dependent receptor C3F22_12245 PF13640 2OG-Fe(II) oxygenase superfamily C3F22_12245 PF18331 PKHD-type hydroxylase C-terminal domain C3F22_12250 PF00682 HMGL-like C3F22_12250 PF08502 LeuA allosteric (dimerisation) domain C3F22_12255 PF00561 alpha/beta hydrolase fold C3F22_12260 PF00561 alpha/beta hydrolase fold C3F22_12260 PF07021 Methionine biosynthesis protein MetW C3F22_12275 PF01725 Ham1 family C3F22_12295 PF01790 Prolipoprotein diacylglyceryl transferase C3F22_12320 PF08212 Lipocalin-like domain C3F22_12325 PF00303 Thymidylate synthase C3F22_12330 PF00186 Dihydrofolate reductase C3F22_12345 PF01625 Peptide methionine sulfoxide reductase C3F22_12355 PF01618 MotA/TolQ/ExbB proton channel family C3F22_12365 PF00551 Formyl transferase C3F22_12365 PF01842 ACT domain C3F22_12375 PF00171 Aldehyde dehydrogenase family C3F22_12380 PF00830 Ribosomal L28 family C3F22_12385 PF00471 Ribosomal protein L33 C3F22_12390 PF00999 Sodium/hydrogen exchanger family C3F22_12390 PF02254 TrkA-N domain C3F22_12405 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C3F22_12410 PF00580 UvrD/REP helicase N-terminal domain C3F22_12410 PF13361 UvrD-like helicase C-terminal domain C3F22_12415 PF02595 Glycerate kinase family C3F22_12440 PF01751 Toprim domain C3F22_12440 PF01131 DNA topoisomerase C3F22_12440 PF01396 Topoisomerase DNA binding C4 zinc finger C3F22_12440 PF08272 Topoisomerase I zinc-ribbon-like C3F22_12465 PF04102 SlyX C3F22_12475 PF03279 Bacterial lipid A biosynthesis acyltransferase C3F22_12490 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F22_12490 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F22_12510 PF01416 tRNA pseudouridine synthase C3F22_12520 PF01176 Translation initiation factor 1A / IF-1 C3F22_12535 PF00180 Isocitrate/isopropylmalate dehydrogenase C3F22_12545 PF00694 Aconitase C-terminal domain C3F22_12550 PF00330 Aconitase family (aconitate hydratase) C3F22_12560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_12560 PF03466 LysR substrate binding domain C3F22_12580 PF00293 NUDIX domain C3F22_12585 PF02896 PEP-utilising enzyme, TIM barrel domain C3F22_12585 PF05524 PEP-utilising enzyme, N-terminal C3F22_12585 PF01590 GAF domain C3F22_12585 PF00391 PEP-utilising enzyme, mobile domain C3F22_12600 PF13737 Transposase DDE domain C3F22_12605 PF00199 Catalase C3F22_12605 PF06628 Catalase-related immune-responsive C3F22_12625 PF12706 Beta-lactamase superfamily domain C3F22_12645 PF14759 Reductase C-terminal C3F22_12645 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_12650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3F22_12655 PF00106 short chain dehydrogenase C3F22_12660 PF00355 Rieske [2Fe-2S] domain C3F22_12665 PF00866 Ring hydroxylating beta subunit C3F22_12670 PF00355 Rieske [2Fe-2S] domain C3F22_12670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F22_12675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_12675 PF03466 LysR substrate binding domain C3F22_12680 PF00561 alpha/beta hydrolase fold C3F22_12685 PF03573 outer membrane porin, OprD family C3F22_12690 PF00682 HMGL-like C3F22_12690 PF07836 DmpG-like communication domain C3F22_12695 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F22_12695 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation C3F22_12700 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3F22_12705 PF13419 Haloacid dehalogenase-like hydrolase C3F22_12710 PF00849 RNA pseudouridylate synthase C3F22_12710 PF01479 S4 domain C3F22_12720 PF12111 Polyribonucleotide phosphorylase C terminal C3F22_12720 PF10150 Ribonuclease E/G family C3F22_12720 PF00575 S1 RNA binding domain C3F22_12725 PF13193 AMP-binding enzyme C-terminal domain C3F22_12725 PF00501 AMP-binding enzyme C3F22_12750 PF04024 PspC domain C3F22_12760 PF00939 Sodium:sulfate symporter transmembrane region C3F22_12765 PF00571 CBS domain C3F22_12775 PF02091 Glycyl-tRNA synthetase alpha subunit C3F22_12780 PF05746 DALR anticodon binding domain C3F22_12780 PF02092 Glycyl-tRNA synthetase beta subunit C3F22_12805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F22_12805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F22_12820 PF08241 Methyltransferase domain C3F22_12830 PF01494 FAD binding domain C3F22_12840 PF03884 DNA gyrase inhibitor YacG C3F22_12850 PF00753 Metallo-beta-lactamase superfamily C3F22_12855 PF00762 Ferrochelatase C3F22_12865 PF01177 Asp/Glu/Hydantoin racemase C3F22_12890 PF16671 Actin cross-linking domain C3F22_12890 PF04717 Type VI secretion system, phage-baseplate injector C3F22_12910 PF01206 Sulfurtransferase TusA C3F22_12915 PF03471 Transporter associated domain C3F22_12915 PF00571 CBS domain C3F22_12920 PF00795 Carbon-nitrogen hydrolase C3F22_12930 PF08334 Type II secretion system (T2SS), protein G C3F22_12930 PF07963 Prokaryotic N-terminal methylation motif C3F22_12935 PF00482 Type II secretion system (T2SS), protein F C3F22_12940 PF18074 Primosomal protein N C-terminal domain C3F22_12940 PF00271 Helicase conserved C-terminal domain C3F22_12940 PF17764 3′ DNA-binding domain (3′BD) C3F22_12940 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C3F22_12940 PF00270 DEAD/DEAH box helicase C3F22_12945 PF00999 Sodium/hydrogen exchanger family C3F22_12945 PF02254 TrkA-N domain C3F22_12950 PF01430 Hsp33 protein C3F22_12980 PF04325 Protein of unknown function (DUF465) C3F22_12985 PF00575 S1 RNA binding domain C3F22_12985 PF03725 3' exoribonuclease family, domain 2 C3F22_12985 PF00013 KH domain C3F22_12985 PF01138 3' exoribonuclease family, domain 1 C3F22_12985 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C3F22_12990 PF00312 Ribosomal protein S15 C3F22_12995 PF13538 UvrD-like helicase C-terminal domain C3F22_13000 PF12705 PD-(D/E)XK nuclease superfamily C3F22_13000 PF00580 UvrD/REP helicase N-terminal domain C3F22_13000 PF13361 UvrD-like helicase C-terminal domain C3F22_13005 PF17946 RecC C-terminal domain C3F22_13015 PF03976 Polyphosphate kinase 2 (PPK2) C3F22_13025 PF01209 ubiE/COQ5 methyltransferase family C3F22_13035 PF03109 ABC1 family C3F22_13060 PF09371 Tex-like protein N-terminal domain C3F22_13060 PF17674 HHH domain C3F22_13060 PF16921 Tex protein YqgF-like domain C3F22_13060 PF00575 S1 RNA binding domain C3F22_13065 PF00486 Transcriptional regulatory protein, C terminal C3F22_13065 PF00072 Response regulator receiver domain C3F22_13075 PF00512 His Kinase A (phospho-acceptor) domain C3F22_13075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_13075 PF00672 HAMP domain C3F22_13080 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C3F22_13080 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C3F22_13085 PF01323 DSBA-like thioredoxin domain C3F22_13115 PF00183 Hsp90 protein C3F22_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_13125 PF03922 OmpW family C3F22_13130 PF03553 Na+/H+ antiporter family C3F22_13130 PF13726 Na+-H+ antiporter family C3F22_13150 PF13817 IS66 C-terminal element C3F22_13150 PF13007 Transposase C of IS166 homeodomain C3F22_13150 PF13005 zinc-finger binding domain of transposase IS66 C3F22_13150 PF03050 Transposase IS66 family C3F22_13170 PF04997 RNA polymerase Rpb1, domain 1 C3F22_13170 PF05000 RNA polymerase Rpb1, domain 4 C3F22_13170 PF04983 RNA polymerase Rpb1, domain 3 C3F22_13170 PF00623 RNA polymerase Rpb1, domain 2 C3F22_13170 PF04998 RNA polymerase Rpb1, domain 5 C3F22_13175 PF00562 RNA polymerase Rpb2, domain 6 C3F22_13175 PF04561 RNA polymerase Rpb2, domain 2 C3F22_13175 PF04565 RNA polymerase Rpb2, domain 3 C3F22_13175 PF04563 RNA polymerase beta subunit C3F22_13175 PF10385 RNA polymerase beta subunit external 1 domain C3F22_13175 PF04560 RNA polymerase Rpb2, domain 7 C3F22_13180 PF16320 Ribosomal protein L7/L12 dimerisation domain C3F22_13180 PF00542 Ribosomal protein L7/L12 C-terminal domain C3F22_13185 PF00466 Ribosomal protein L10 C3F22_13190 PF00687 Ribosomal protein L1p/L10e family C3F22_13195 PF00298 Ribosomal protein L11, RNA binding domain C3F22_13195 PF03946 Ribosomal protein L11, N-terminal domain C3F22_13200 PF02357 Transcription termination factor nusG C3F22_13200 PF00467 KOW motif C3F22_13205 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C3F22_13215 PF03143 Elongation factor Tu C-terminal domain C3F22_13215 PF03144 Elongation factor Tu domain 2 C3F22_13215 PF00009 Elongation factor Tu GTP binding domain C3F22_13240 PF04715 Anthranilate synthase component I, N terminal region C3F22_13240 PF00425 chorismate binding enzyme C3F22_13245 PF13419 Haloacid dehalogenase-like hydrolase C3F22_13250 PF16697 Inner membrane component of T3SS, cytoplasmic domain C3F22_13255 PF00263 Bacterial type II and III secretion system protein C3F22_13255 PF03958 Bacterial type II/III secretion system short domain C3F22_13270 PF00816 H-NS histone family C3F22_13275 PF03061 Thioesterase superfamily C3F22_13295 PF03900 Porphobilinogen deaminase, C-terminal domain C3F22_13295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C3F22_13300 PF00072 Response regulator receiver domain C3F22_13300 PF04397 LytTr DNA-binding domain C3F22_13305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_13305 PF06580 Histidine kinase C3F22_13305 PF07694 5TMR of 5TMR-LYT C3F22_13310 PF00206 Lyase C3F22_13310 PF14698 Argininosuccinate lyase C-terminal C3F22_13315 PF04362 Bacterial Fe(2+) trafficking C3F22_13335 PF01066 CDP-alcohol phosphatidyltransferase C3F22_13345 PF01541 GIY-YIG catalytic domain C3F22_13345 PF02151 UvrB/uvrC motif C3F22_13345 PF08459 UvrC Helix-hairpin-helix N-terminal C3F22_13350 PF07724 AAA domain (Cdc48 subfamily) C3F22_13350 PF10431 C-terminal, D2-small domain, of ClpB protein C3F22_13365 PF00378 Enoyl-CoA hydratase/isomerase C3F22_13365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F22_13365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F22_13370 PF02803 Thiolase, C-terminal domain C3F22_13370 PF00108 Thiolase, N-terminal domain C3F22_13385 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_13385 PF13359 DDE superfamily endonuclease C3F22_13400 PF09313 Domain of unknown function (DUF1971) C3F22_13400 PF03848 Tellurite resistance protein TehB C3F22_13435 PF00475 Imidazoleglycerol-phosphate dehydratase C3F22_13440 PF00117 Glutamine amidotransferase class-I C3F22_13460 PF00977 Histidine biosynthesis protein C3F22_13485 PF01636 Phosphotransferase enzyme family C3F22_13490 PF00977 Histidine biosynthesis protein C3F22_13505 PF00665 Integrase core domain C3F22_13505 PF13276 HTH-like domain C3F22_13505 PF13333 Integrase core domain C3F22_13535 PF02705 K+ potassium transporter C3F22_13580 PF02678 Pirin C3F22_13580 PF05726 Pirin C-terminal cupin domain C3F22_13585 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F22_13585 PF00578 AhpC/TSA family C3F22_13600 PF00436 Single-strand binding protein family C3F22_13605 PF07690 Major Facilitator Superfamily C3F22_13625 PF08543 Phosphomethylpyrimidine kinase C3F22_13625 PF03070 TENA/THI-4/PQQC family C3F22_13625 PF02581 Thiamine monophosphate synthase C3F22_13630 PF17755 UvrA DNA-binding domain C3F22_13630 PF17760 UvrA interaction domain C3F22_13660 PF02028 BCCT, betaine/carnitine/choline family transporter C3F22_13670 PF00474 Sodium:solute symporter family C3F22_13675 PF04341 Protein of unknown function, DUF485 C3F22_13680 PF01627 Hpt domain C3F22_13680 PF00072 Response regulator receiver domain C3F22_13680 PF00512 His Kinase A (phospho-acceptor) domain C3F22_13680 PF00672 HAMP domain C3F22_13680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_13690 PF00072 Response regulator receiver domain C3F22_13690 PF00196 Bacterial regulatory proteins, luxR family C3F22_13695 PF03358 NADPH-dependent FMN reductase C3F22_13700 PF00296 Luciferase-like monooxygenase C3F22_13705 PF00677 Lumazine binding domain C3F22_13710 PF03441 FAD binding domain of DNA photolyase C3F22_13710 PF00875 DNA photolyase C3F22_13715 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F22_13715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F22_13720 PF13193 AMP-binding enzyme C-terminal domain C3F22_13720 PF16177 Acetyl-coenzyme A synthetase N-terminus C3F22_13720 PF00501 AMP-binding enzyme C3F22_13730 PF05552 Conserved TM helix C3F22_13730 PF00924 Mechanosensitive ion channel C3F22_13735 PF04452 RNA methyltransferase C3F22_13740 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C3F22_13745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_13770 PF01368 DHH family C3F22_13770 PF17768 RecJ OB domain C3F22_13770 PF02272 DHHA1 domain C3F22_13775 PF01243 Pyridoxamine 5'-phosphate oxidase C3F22_13775 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C3F22_13780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F22_13780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F22_13780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F22_13780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F22_13785 PF00478 IMP dehydrogenase / GMP reductase domain C3F22_13785 PF00571 CBS domain C3F22_13790 PF03692 Putative zinc- or iron-chelating domain C3F22_13795 PF00258 Flavodoxin C3F22_13795 PF01613 Flavin reductase like domain C3F22_13800 PF01169 Uncharacterized protein family UPF0016 C3F22_13805 PF02817 e3 binding domain C3F22_13805 PF00364 Biotin-requiring enzyme C3F22_13805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F22_13810 PF17831 Pyruvate dehydrogenase E1 component middle domain C3F22_13810 PF00456 Transketolase, thiamine diphosphate binding domain C3F22_13825 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C3F22_13830 PF00091 Tubulin/FtsZ family, GTPase domain C3F22_13830 PF12327 FtsZ family, C-terminal domain C3F22_13835 PF02491 SHS2 domain inserted in FTSA C3F22_13840 PF03799 Cell division protein FtsQ C3F22_13840 PF08478 POTRA domain, FtsQ-type C3F22_13845 PF07478 D-ala D-ala ligase C-terminus C3F22_13845 PF01820 D-ala D-ala ligase N-terminus C3F22_13850 PF01225 Mur ligase family, catalytic domain C3F22_13850 PF08245 Mur ligase middle domain C3F22_13850 PF02875 Mur ligase family, glutamate ligase domain C3F22_13855 PF03033 Glycosyltransferase family 28 N-terminal domain C3F22_13855 PF04101 Glycosyltransferase family 28 C-terminal domain C3F22_13865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C3F22_13865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C3F22_13880 PF00156 Phosphoribosyl transferase domain C3F22_13885 PF03372 Endonuclease/Exonuclease/phosphatase family C3F22_13900 PF07859 alpha/beta hydrolase fold C3F22_13905 PF02525 Flavodoxin-like fold C3F22_13915 PF11412 Disulphide bond corrector protein DsbC C3F22_13915 PF02683 Cytochrome C biogenesis protein transmembrane region C3F22_13955 PF01751 Toprim domain C3F22_13955 PF00986 DNA gyrase B subunit, carboxyl terminus C3F22_13955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_13955 PF00204 DNA gyrase B C3F22_13960 PF05728 Uncharacterised protein family (UPF0227) C3F22_13970 PF02600 Disulfide bond formation protein DsbB C3F22_13975 PF04262 Glutamate-cysteine ligase C3F22_13990 PF04286 Protein of unknown function (DUF445) C3F22_14000 PF00750 tRNA synthetases class I (R) C3F22_14000 PF05746 DALR anticodon binding domain C3F22_14000 PF03485 Arginyl tRNA synthetase N terminal domain C3F22_14010 PF02666 Phosphatidylserine decarboxylase C3F22_14015 PF00581 Rhodanese-like domain C3F22_14020 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C3F22_14020 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C3F22_14030 PF00199 Catalase C3F22_14030 PF06628 Catalase-related immune-responsive C3F22_14035 PF02580 D-Tyr-tRNA(Tyr) deacylase C3F22_14060 PF13089 Polyphosphate kinase N-terminal domain C3F22_14060 PF02503 Polyphosphate kinase middle domain C3F22_14060 PF13090 Polyphosphate kinase C-terminal domain 2 C3F22_14060 PF17941 Polyphosphate kinase C-terminal domain 1 C3F22_14065 PF01758 Sodium Bile acid symporter family C3F22_14070 PF00857 Isochorismatase family C3F22_14080 PF00701 Dihydrodipicolinate synthetase family C3F22_14090 PF01259 SAICAR synthetase C3F22_14095 PF00004 ATPase family associated with various cellular activities (AAA) C3F22_14095 PF12002 MgsA AAA+ ATPase C terminal C3F22_14095 PF16193 AAA C-terminal domain C3F22_14100 PF13188 PAS domain C3F22_14100 PF00990 Diguanylate cyclase, GGDEF domain C3F22_14100 PF00563 EAL domain C3F22_14100 PF03707 Bacterial signalling protein N terminal repeat C3F22_14105 PF03692 Putative zinc- or iron-chelating domain C3F22_14110 PF07043 Protein of unknown function (DUF1328) C3F22_14115 PF03023 Lipid II flippase MurJ C3F22_14120 PF01510 N-acetylmuramoyl-L-alanine amidase C3F22_14125 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C3F22_14125 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C3F22_14130 PF01138 3' exoribonuclease family, domain 1 C3F22_14130 PF03725 3' exoribonuclease family, domain 2 C3F22_14135 PF00440 Bacterial regulatory proteins, tetR family C3F22_14140 PF01323 DSBA-like thioredoxin domain C3F22_14150 PF13419 Haloacid dehalogenase-like hydrolase C3F22_14155 PF00106 short chain dehydrogenase C3F22_14180 PF00583 Acetyltransferase (GNAT) family C3F22_14180 PF00696 Amino acid kinase family C3F22_14185 PF09084 NMT1/THI5 like C3F22_14190 PF09084 NMT1/THI5 like C3F22_14195 PF00296 Luciferase-like monooxygenase C3F22_14200 PF00528 Binding-protein-dependent transport system inner membrane component C3F22_14205 PF00005 ABC transporter C3F22_14210 PF00440 Bacterial regulatory proteins, tetR family C3F22_14210 PF08362 YcdC-like protein, C-terminal region C3F22_14220 PF01687 Riboflavin kinase C3F22_14220 PF06574 FAD synthetase C3F22_14225 PF06827 Zinc finger found in FPG and IleRS C3F22_14225 PF00133 tRNA synthetases class I (I, L, M and V) C3F22_14225 PF08264 Anticodon-binding domain of tRNA C3F22_14230 PF01252 Signal peptidase (SPase) II C3F22_14235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_14255 PF07995 Glucose / Sorbosone dehydrogenase C3F22_14260 PF01590 GAF domain C3F22_14260 PF00563 EAL domain C3F22_14260 PF00990 Diguanylate cyclase, GGDEF domain C3F22_14260 PF00360 Phytochrome region C3F22_14310 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F22_14320 PF07859 alpha/beta hydrolase fold C3F22_14330 PF01025 GrpE C3F22_14335 PF00012 Hsp70 protein C3F22_14355 PF01521 Iron-sulphur cluster biosynthesis C3F22_14380 PF00005 ABC transporter C3F22_14380 PF12848 ABC transporter C3F22_14385 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_14385 PF13823 Alcohol dehydrogenase GroES-associated C3F22_14385 PF00107 Zinc-binding dehydrogenase C3F22_14395 PF00986 DNA gyrase B subunit, carboxyl terminus C3F22_14395 PF18053 DNA gyrase B subunit insert domain C3F22_14395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_14395 PF01751 Toprim domain C3F22_14395 PF00204 DNA gyrase B C3F22_14400 PF02463 RecF/RecN/SMC N terminal domain C3F22_14405 PF02767 DNA polymerase III beta subunit, central domain C3F22_14405 PF02768 DNA polymerase III beta subunit, C-terminal domain C3F22_14405 PF00712 DNA polymerase III beta subunit, N-terminal domain C3F22_14410 PF11638 DnaA N-terminal domain C3F22_14410 PF08299 Bacterial dnaA protein helix-turn-helix C3F22_14410 PF00308 Bacterial dnaA protein C3F22_14415 PF00468 Ribosomal protein L34 C3F22_14420 PF00825 Ribonuclease P C3F22_14425 PF01809 Putative membrane protein insertion efficiency factor C3F22_14430 PF02096 60Kd inner membrane protein C3F22_14430 PF14849 YidC periplasmic domain C3F22_14435 PF12631 MnmE helical domain C3F22_14435 PF01926 50S ribosome-binding GTPase C3F22_14435 PF10396 GTP-binding protein TrmE N-terminus C3F22_14465 PF02583 Metal-sensitive transcriptional repressor C3F22_14470 PF01545 Cation efflux family C3F22_14475 PF13098 Thioredoxin-like domain C3F22_14475 PF10411 Disulfide bond isomerase protein N-terminus C3F22_14485 PF00156 Phosphoribosyl transferase domain C3F22_14490 PF01979 Amidohydrolase family C3F22_14495 PF03741 Integral membrane protein TerC family C3F22_14500 PF07690 Major Facilitator Superfamily C3F22_14520 PF00107 Zinc-binding dehydrogenase C3F22_14520 PF13823 Alcohol dehydrogenase GroES-associated C3F22_14520 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_14530 PF02875 Mur ligase family, glutamate ligase domain C3F22_14530 PF08245 Mur ligase middle domain C3F22_14530 PF01225 Mur ligase family, catalytic domain C3F22_14540 PF00731 AIR carboxylase C3F22_14545 PF02222 ATP-grasp domain C3F22_14545 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C3F22_14550 PF13406 Transglycosylase SLT domain C3F22_14555 PF03702 Anhydro-N-acetylmuramic acid kinase C3F22_14560 PF00579 tRNA synthetases class I (W and Y) C3F22_14595 PF07690 Major Facilitator Superfamily C3F22_14600 PF07690 Major Facilitator Superfamily C3F22_14615 PF01965 DJ-1/PfpI family C3F22_14630 PF00171 Aldehyde dehydrogenase family C3F22_14635 PF00209 Sodium:neurotransmitter symporter family C3F22_14645 PF02535 ZIP Zinc transporter C3F22_14650 PF01029 NusB family C3F22_14650 PF01189 16S rRNA methyltransferase RsmB/F C3F22_14655 PF00551 Formyl transferase C3F22_14655 PF02911 Formyl transferase, C-terminal domain C3F22_14660 PF00920 Dehydratase family C3F22_14665 PF00920 Dehydratase family C3F22_14685 PF03466 LysR substrate binding domain C3F22_14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_14690 PF00860 Permease family C3F22_14695 PF00311 Phosphoenolpyruvate carboxylase C3F22_14700 PF00440 Bacterial regulatory proteins, tetR family C3F22_14710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F22_14715 PF00873 AcrB/AcrD/AcrF family C3F22_14725 PF00226 DnaJ domain C3F22_14725 PF01556 DnaJ C terminal domain C3F22_14725 PF00684 DnaJ central domain C3F22_14740 PF01113 Dihydrodipicolinate reductase, N-terminus C3F22_14740 PF05173 Dihydrodipicolinate reductase, C-terminus C3F22_14760 PF07282 Putative transposase DNA-binding domain C3F22_14760 PF01385 Probable transposase C3F22_14760 PF12323 Helix-turn-helix domain C3F22_14770 PF00107 Zinc-binding dehydrogenase C3F22_14770 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_14775 PF03352 Methyladenine glycosylase C3F22_14785 PF01551 Peptidase family M23 C3F22_14790 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F22_14790 PF10576 Iron-sulfur binding domain of endonuclease III C3F22_14790 PF00633 Helix-hairpin-helix motif C3F22_14790 PF14815 NUDIX domain C3F22_14805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_14805 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F22_14810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F22_14810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F22_14815 PF13614 AAA domain C3F22_14815 PF13807 G-rich domain on putative tyrosine kinase C3F22_14815 PF02706 Chain length determinant protein C3F22_14820 PF02563 Polysaccharide biosynthesis/export protein C3F22_14820 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C3F22_14820 PF10531 SLBB domain C3F22_14825 PF16363 GDP-mannose 4,6 dehydratase C3F22_14830 PF00483 Nucleotidyl transferase C3F22_14835 PF05523 WxcM-like, C-terminal C3F22_14840 PF01757 Acyltransferase family C3F22_14850 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F22_14860 PF00535 Glycosyl transferase family 2 C3F22_14875 PF00665 Integrase core domain C3F22_14875 PF13936 Helix-turn-helix domain C3F22_14900 PF03050 Transposase IS66 family C3F22_14900 PF13817 IS66 C-terminal element C3F22_14900 PF13007 Transposase C of IS166 homeodomain C3F22_14900 PF13005 zinc-finger binding domain of transposase IS66 C3F22_14910 PF00665 Integrase core domain C3F22_14910 PF13936 Helix-turn-helix domain C3F22_14925 PF02397 Bacterial sugar transferase C3F22_14935 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_14935 PF13359 DDE superfamily endonuclease C3F22_14940 PF13614 AAA domain C3F22_14940 PF13807 G-rich domain on putative tyrosine kinase C3F22_14940 PF02706 Chain length determinant protein C3F22_14945 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3F22_14950 PF02563 Polysaccharide biosynthesis/export protein C3F22_14950 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C3F22_14950 PF10531 SLBB domain C3F22_14955 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3F22_14955 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3F22_14955 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3F22_14960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3F22_14960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3F22_14965 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_14970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F22_15000 PF02350 UDP-N-acetylglucosamine 2-epimerase C3F22_15010 PF02397 Bacterial sugar transferase C3F22_15015 PF14602 Hexapeptide repeat of succinyl-transferase C3F22_15015 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_15015 PF17836 PglD N-terminal domain C3F22_15020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F22_15025 PF02719 Polysaccharide biosynthesis protein C3F22_15030 PF00483 Nucleotidyl transferase C3F22_15035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3F22_15035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3F22_15035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3F22_15040 PF00342 Phosphoglucose isomerase C3F22_15045 PF16363 GDP-mannose 4,6 dehydratase C3F22_15050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F22_15050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F22_15050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F22_15050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F22_15060 PF06527 TniQ C3F22_15060 PF15978 Tn7-like transposition protein D C3F22_15065 PF13401 AAA domain C3F22_15065 PF11426 Tn7 transposition regulator TnsC C3F22_15070 PF00665 Integrase core domain C3F22_15095 PF01380 SIS domain C3F22_15100 PF14602 Hexapeptide repeat of succinyl-transferase C3F22_15100 PF12804 MobA-like NTP transferase domain C3F22_15100 PF00132 Bacterial transferase hexapeptide (six repeats) C3F22_15105 PF04608 Phosphatidylglycerophosphatase A C3F22_15110 PF02769 AIR synthase related protein, C-terminal domain C3F22_15110 PF00586 AIR synthase related protein, N-terminal domain C3F22_15115 PF01029 NusB family C3F22_15120 PF00885 6,7-dimethyl-8-ribityllumazine synthase C3F22_15125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F22_15125 PF00925 GTP cyclohydrolase II C3F22_15130 PF00171 Aldehyde dehydrogenase family C3F22_15140 PF03641 Possible lysine decarboxylase C3F22_15160 PF06100 MCRA family C3F22_15175 PF05524 PEP-utilising enzyme, N-terminal C3F22_15175 PF00391 PEP-utilising enzyme, mobile domain C3F22_15175 PF02896 PEP-utilising enzyme, TIM barrel domain C3F22_15175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F22_15175 PF00381 PTS HPr component phosphorylation site C3F22_15180 PF00294 pfkB family carbohydrate kinase C3F22_15185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3F22_15185 PF02378 Phosphotransferase system, EIIC C3F22_15195 PF12419 SNF2 Helicase protein C3F22_15195 PF00271 Helicase conserved C-terminal domain C3F22_15195 PF00176 SNF2 family N-terminal domain C3F22_15200 PF13657 HipA N-terminal domain C3F22_15200 PF07804 HipA-like C-terminal domain C3F22_15255 PF00202 Aminotransferase class-III C3F22_15260 PF12833 Helix-turn-helix domain C3F22_15260 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F22_15270 PF13520 Amino acid permease C3F22_15300 PF01867 CRISPR associated protein Cas1 C3F22_15330 PF07120 Protein of unknown function (DUF1376) C3F22_15375 PF13614 AAA domain C3F22_15390 PF09335 SNARE associated Golgi protein C3F22_15395 PF02540 NAD synthase C3F22_15395 PF00958 GMP synthase C terminal domain C3F22_15395 PF00117 Glutamine amidotransferase class-I C3F22_15405 PF17158 Membrane-associated sensor, integral membrane domain C3F22_15405 PF00990 Diguanylate cyclase, GGDEF domain C3F22_15410 PF02678 Pirin C3F22_15410 PF05726 Pirin C-terminal cupin domain C3F22_15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_15425 PF00512 His Kinase A (phospho-acceptor) domain C3F22_15425 PF11808 Phosphate regulon sensor protein PhoR C3F22_15425 PF00989 PAS fold C3F22_15430 PF00072 Response regulator receiver domain C3F22_15430 PF00486 Transcriptional regulatory protein, C terminal C3F22_15440 PF00106 short chain dehydrogenase C3F22_15455 PF01554 MatE C3F22_15460 PF00155 Aminotransferase class I and II C3F22_15465 PF16671 Actin cross-linking domain C3F22_15465 PF04717 Type VI secretion system, phage-baseplate injector C3F22_15475 PF01695 IstB-like ATP binding protein C3F22_15500 PF13359 DDE superfamily endonuclease C3F22_15500 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F22_15520 PF00872 Transposase, Mutator family C3F22_15525 PF13737 Transposase DDE domain C3F22_15530 PF04261 Dyp-type peroxidase family C3F22_15535 PF01810 LysE type translocator C3F22_15545 PF00950 ABC 3 transport family C3F22_15550 PF00005 ABC transporter C3F22_15570 PF00119 ATP synthase A chain C3F22_15575 PF00137 ATP synthase subunit C C3F22_15580 PF00430 ATP synthase B/B' CF(0) C3F22_15585 PF00213 ATP synthase delta (OSCP) subunit C3F22_15590 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F22_15590 PF00306 ATP synthase alpha/beta chain, C terminal domain C3F22_15590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F22_15595 PF00231 ATP synthase C3F22_15600 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F22_15600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F22_15605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C3F22_15610 PF00171 Aldehyde dehydrogenase family C3F22_15625 PF00255 Glutathione peroxidase C3F22_15630 PF00255 Glutathione peroxidase C3F22_15635 PF00892 EamA-like transporter family C3F22_15645 PF01300 Telomere recombination C3F22_15650 PF02481 DNA recombination-mediator protein A C3F22_15650 PF17782 DprA winged helix domain C3F22_15660 PF01327 Polypeptide deformylase C3F22_15705 PF07690 Major Facilitator Superfamily C3F22_15710 PF11842 Domain of unknown function (DUF3362) C3F22_15710 PF04055 Radical SAM superfamily C3F22_15710 PF08497 Radical SAM N-terminal C3F22_15725 PF07690 Major Facilitator Superfamily C3F22_15725 PF00083 Sugar (and other) transporter C3F22_15730 PF00817 impB/mucB/samB family C3F22_15730 PF11798 IMS family HHH motif C3F22_15730 PF11799 impB/mucB/samB family C-terminal domain C3F22_15740 PF07690 Major Facilitator Superfamily C3F22_15750 PF03641 Possible lysine decarboxylase C3F22_15755 PF03471 Transporter associated domain C3F22_15755 PF03741 Integral membrane protein TerC family C3F22_15760 PF02810 SEC-C motif C3F22_15765 PF03458 UPF0126 domain C3F22_15770 PF07690 Major Facilitator Superfamily C3F22_15775 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F22_15775 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F22_15780 PF13193 AMP-binding enzyme C-terminal domain C3F22_15780 PF00501 AMP-binding enzyme C3F22_15795 PF00719 Inorganic pyrophosphatase C3F22_15815 PF13335 Magnesium chelatase, subunit ChlI C-terminal C3F22_15815 PF01078 Magnesium chelatase, subunit ChlI C3F22_15825 PF00543 Nitrogen regulatory protein P-II C3F22_15830 PF00909 Ammonium Transporter Family C3F22_15835 PF03477 ATP cone domain C3F22_15840 PF01872 RibD C-terminal domain C3F22_15840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3F22_15850 PF00677 Lumazine binding domain C3F22_15855 PF09335 SNARE associated Golgi protein C3F22_15870 PF02789 Cytosol aminopeptidase family, N-terminal domain C3F22_15870 PF00883 Cytosol aminopeptidase family, catalytic domain C3F22_15875 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F22_15880 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F22_15885 PF01676 Metalloenzyme superfamily C3F22_15885 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C3F22_15890 PF00595 PDZ domain C3F22_15890 PF03572 Peptidase family S41 C3F22_15895 PF00072 Response regulator receiver domain C3F22_15895 PF00158 Sigma-54 interaction domain C3F22_15895 PF02954 Bacterial regulatory protein, Fis family C3F22_15905 PF00196 Bacterial regulatory proteins, luxR family C3F22_15905 PF00072 Response regulator receiver domain C3F22_15910 PF00768 D-alanyl-D-alanine carboxypeptidase C3F22_15915 PF00291 Pyridoxal-phosphate dependent enzyme C3F22_15920 PF01842 ACT domain C3F22_15920 PF03447 Homoserine dehydrogenase, NAD binding domain C3F22_15920 PF00742 Homoserine dehydrogenase C3F22_15925 PF13098 Thioredoxin-like domain C3F22_15925 PF10411 Disulfide bond isomerase protein N-terminus C3F22_15930 PF00589 Phage integrase family C3F22_15930 PF02899 Phage integrase, N-terminal SAM-like domain C3F22_15940 PF07664 Ferrous iron transport protein B C terminus C3F22_15940 PF02421 Ferrous iron transport protein B C3F22_15940 PF07670 Nucleoside recognition C3F22_15950 PF08245 Mur ligase middle domain C3F22_15950 PF02875 Mur ligase family, glutamate ligase domain C3F22_15955 PF01098 Cell cycle protein C3F22_15965 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F22_15970 PF01258 Prokaryotic dksA/traR C4-type zinc finger C3F22_15975 PF00149 Calcineurin-like phosphoesterase C3F22_15980 PF00293 NUDIX domain C3F22_15985 PF13667 ThiC-associated domain C3F22_15985 PF01964 Radical SAM ThiC family C3F22_15995 PF02321 Outer membrane efflux protein C3F22_16000 PF01895 PhoU domain C3F22_16005 PF00535 Glycosyl transferase family 2 C3F22_16035 PF07282 Putative transposase DNA-binding domain C3F22_16035 PF12323 Helix-turn-helix domain C3F22_16035 PF01385 Probable transposase C3F22_16045 PF03652 Holliday junction resolvase C3F22_16050 PF02622 Uncharacterized ACR, COG1678 C3F22_16070 PF02463 RecF/RecN/SMC N terminal domain C3F22_16085 PF00872 Transposase, Mutator family C3F22_16095 PF03389 MobA/MobL family C3F22_16115 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_16120 PF00756 Putative esterase C3F22_16135 PF00107 Zinc-binding dehydrogenase C3F22_16135 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_16140 PF02583 Metal-sensitive transcriptional repressor C3F22_16145 PF13005 zinc-finger binding domain of transposase IS66 C3F22_16145 PF13007 Transposase C of IS166 homeodomain C3F22_16145 PF13817 IS66 C-terminal element C3F22_16145 PF03050 Transposase IS66 family C3F22_16165 PF00239 Resolvase, N terminal domain C3F22_16165 PF02796 Helix-turn-helix domain of resolvase C3F22_16195 PF13823 Alcohol dehydrogenase GroES-associated C3F22_16195 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_16195 PF00107 Zinc-binding dehydrogenase C3F22_16210 PF01051 Initiator Replication protein C3F22_16260 PF00665 Integrase core domain C3F22_16260 PF13936 Helix-turn-helix domain C3F22_16270 PF13635 Domain of unknown function (DUF4143) C3F22_16270 PF13173 AAA domain C3F22_16285 PF01051 Initiator Replication protein C3F22_16290 PF02195 ParB-like nuclease domain C3F22_16290 PF17762 HTH domain found in ParB protein C3F22_16295 PF13614 AAA domain C3F22_16340 PF00577 Outer membrane usher protein C3F22_16340 PF13954 PapC N-terminal domain C3F22_16340 PF13953 PapC C-terminal domain C3F22_16395 PF00239 Resolvase, N terminal domain C3F22_16395 PF02796 Helix-turn-helix domain of resolvase C3F22_16420 PF13737 Transposase DDE domain C3F22_16450 PF03050 Transposase IS66 family C3F22_16450 PF13817 IS66 C-terminal element C3F22_16450 PF13007 Transposase C of IS166 homeodomain C3F22_16450 PF13005 zinc-finger binding domain of transposase IS66 C3F22_16485 PF03741 Integral membrane protein TerC family C3F22_16490 PF01047 MarR family C3F22_16495 PF02566 OsmC-like protein C3F22_16505 PF05973 Phage derived protein Gp49-like (DUF891) C3F22_16510 PF00990 Diguanylate cyclase, GGDEF domain C3F22_16510 PF17158 Membrane-associated sensor, integral membrane domain C3F22_16515 PF02796 Helix-turn-helix domain of resolvase C3F22_16515 PF00239 Resolvase, N terminal domain C3F22_16540 PF13614 AAA domain C3F22_16580 PF03743 Bacterial conjugation TrbI-like protein C3F22_16585 PF00437 Type II/IV secretion system protein C3F22_16600 PF01551 Peptidase family M23 C3F22_16600 PF10145 Phage-related minor tail protein C3F22_16600 PF01464 Transglycosylase SLT domain C3F22_16615 PF01464 Transglycosylase SLT domain C3F22_16615 PF10145 Phage-related minor tail protein C3F22_16615 PF01551 Peptidase family M23 C3F22_16640 PF00565 Staphylococcal nuclease homologue C3F22_16655 PF00239 Resolvase, N terminal domain C3F22_16655 PF02796 Helix-turn-helix domain of resolvase C3F22_16665 PF00753 Metallo-beta-lactamase superfamily C3F22_16670 PF13936 Helix-turn-helix domain C3F22_16670 PF00665 Integrase core domain C3F22_16675 PF01636 Phosphotransferase enzyme family C3F22_16700 PF17841 BID domain of Bartonella effector protein (Bep) C3F22_16700 PF03389 MobA/MobL family C3F22_16700 PF01443 Viral (Superfamily 1) RNA helicase C3F22_16790 PF04055 Radical SAM superfamily C3F22_16790 PF06968 Biotin and Thiamin Synthesis associated domain C3F22_16790 PF00202 Aminotransferase class-III C3F22_16795 PF00561 alpha/beta hydrolase fold C3F22_16825 PF02350 UDP-N-acetylglucosamine 2-epimerase C3F22_16850 PF06968 Biotin and Thiamin Synthesis associated domain C3F22_16850 PF04055 Radical SAM superfamily C3F22_16870 PF00593 TonB dependent receptor C3F22_16870 PF07715 TonB-dependent Receptor Plug Domain C3F22_16885 PF13533 Biotin-lipoyl like C3F22_16925 PF00465 Iron-containing alcohol dehydrogenase C3F22_16940 PF00171 Aldehyde dehydrogenase family C3F22_16945 PF13007 Transposase C of IS166 homeodomain C3F22_16945 PF03050 Transposase IS66 family C3F22_16945 PF13005 zinc-finger binding domain of transposase IS66 C3F22_16945 PF13817 IS66 C-terminal element C3F22_16965 PF00593 TonB dependent receptor C3F22_16965 PF07715 TonB-dependent Receptor Plug Domain C3F22_17020 PF02195 ParB-like nuclease domain C3F22_17020 PF17762 HTH domain found in ParB protein C3F22_17025 PF13614 AAA domain C3F22_17060 PF04172 LrgB-like family C3F22_17065 PF03788 LrgA family C3F22_17070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_17070 PF03466 LysR substrate binding domain C3F22_17075 PF16925 Tetracyclin repressor-like, C-terminal domain C3F22_17075 PF00440 Bacterial regulatory proteins, tetR family C3F22_17080 PF00107 Zinc-binding dehydrogenase C3F22_17080 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_17090 PF17755 UvrA DNA-binding domain C3F22_17110 PF00665 Integrase core domain C3F22_17110 PF13936 Helix-turn-helix domain C3F22_17130 PF01695 IstB-like ATP binding protein C3F22_17135 PF00665 Integrase core domain C3F22_17135 PF02796 Helix-turn-helix domain of resolvase C3F22_17150 PF13817 IS66 C-terminal element C3F22_17150 PF13007 Transposase C of IS166 homeodomain C3F22_17150 PF03050 Transposase IS66 family C3F22_17150 PF13005 zinc-finger binding domain of transposase IS66 C3F22_17170 PF00990 Diguanylate cyclase, GGDEF domain C3F22_17170 PF08448 PAS fold C3F22_17180 PF05973 Phage derived protein Gp49-like (DUF891) C3F22_17190 PF13610 DDE domain C3F22_17195 PF01545 Cation efflux family C3F22_17200 PF00873 AcrB/AcrD/AcrF family C3F22_17205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F22_17210 PF02321 Outer membrane efflux protein C3F22_17220 PF13411 MerR HTH family regulatory protein C3F22_17225 PF01545 Cation efflux family C3F22_17235 PF07670 Nucleoside recognition C3F22_17235 PF02421 Ferrous iron transport protein B C3F22_17235 PF07664 Ferrous iron transport protein B C terminus C3F22_17245 PF03358 NADPH-dependent FMN reductase C3F22_17250 PF01758 Sodium Bile acid symporter family C3F22_17260 PF01022 Bacterial regulatory protein, arsR family C3F22_17265 PF03960 ArsC family C3F22_17270 PF00239 Resolvase, N terminal domain C3F22_17270 PF02796 Helix-turn-helix domain of resolvase C3F22_17345 PF13194 Domain of unknown function (DUF4010) C3F22_17350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_17350 PF00672 HAMP domain C3F22_17350 PF00512 His Kinase A (phospho-acceptor) domain C3F22_17355 PF00486 Transcriptional regulatory protein, C terminal C3F22_17355 PF00072 Response regulator receiver domain C3F22_17365 PF07731 Multicopper oxidase C3F22_17365 PF07732 Multicopper oxidase C3F22_17365 PF00394 Multicopper oxidase C3F22_17385 PF03358 NADPH-dependent FMN reductase C3F22_17390 PF13610 DDE domain C3F22_17400 PF13610 DDE domain C3F22_17410 PF13533 Biotin-lipoyl like C3F22_17425 PF03050 Transposase IS66 family C3F22_17425 PF13005 zinc-finger binding domain of transposase IS66 C3F22_17425 PF13007 Transposase C of IS166 homeodomain C3F22_17425 PF13817 IS66 C-terminal element C3F22_17460 PF01348 Type II intron maturase C3F22_17460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C3F22_17490 PF13005 zinc-finger binding domain of transposase IS66 C3F22_17490 PF13007 Transposase C of IS166 homeodomain C3F22_17490 PF03050 Transposase IS66 family C3F22_17490 PF13817 IS66 C-terminal element C3F22_17505 PF13007 Transposase C of IS166 homeodomain C3F22_17505 PF13817 IS66 C-terminal element C3F22_17505 PF03050 Transposase IS66 family C3F22_17505 PF13005 zinc-finger binding domain of transposase IS66 C3F22_17525 PF13635 Domain of unknown function (DUF4143) C3F22_17525 PF13173 AAA domain C3F22_17555 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F22_17575 PF00462 Glutaredoxin C3F22_17580 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F22_17580 PF00175 Oxidoreductase NAD-binding domain C3F22_17580 PF00970 Oxidoreductase FAD-binding domain C3F22_17585 PF00174 Oxidoreductase molybdopterin binding domain C3F22_17610 PF00107 Zinc-binding dehydrogenase C3F22_17610 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_17625 PF02798 Glutathione S-transferase, N-terminal domain C3F22_17625 PF00043 Glutathione S-transferase, C-terminal domain C3F22_17630 PF01625 Peptide methionine sulfoxide reductase C3F22_17635 PF01641 SelR domain C3F22_17640 PF01695 IstB-like ATP binding protein C3F22_17655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F22_17655 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F22_17660 PF13737 Transposase DDE domain C3F22_17695 PF00990 Diguanylate cyclase, GGDEF domain C3F22_17695 PF08448 PAS fold C3F22_17700 PF01625 Peptide methionine sulfoxide reductase C3F22_17705 PF00108 Thiolase, N-terminal domain C3F22_17705 PF02803 Thiolase, C-terminal domain C3F22_17720 PF01641 SelR domain C3F22_17725 PF00462 Glutaredoxin C3F22_17730 PF01625 Peptide methionine sulfoxide reductase C3F22_17745 PF00902 Sec-independent protein translocase protein (TatC) C3F22_17750 PF02416 mttA/Hcf106 family C3F22_17755 PF02416 mttA/Hcf106 family C3F22_17765 PF02254 TrkA-N domain C3F22_17765 PF00999 Sodium/hydrogen exchanger family C3F22_17780 PF04055 Radical SAM superfamily C3F22_17790 PF00676 Dehydrogenase E1 component C3F22_17795 PF02780 Transketolase, C-terminal domain C3F22_17795 PF02779 Transketolase, pyrimidine binding domain C3F22_17800 PF02817 e3 binding domain C3F22_17800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F22_17800 PF00364 Biotin-requiring enzyme C3F22_17825 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_17825 PF00107 Zinc-binding dehydrogenase C3F22_17830 PF00392 Bacterial regulatory proteins, gntR family C3F22_17830 PF07729 FCD domain C3F22_17865 PF00005 ABC transporter C3F22_17885 PF01219 Prokaryotic diacylglycerol kinase C3F22_17895 PF08521 Two-component sensor kinase N-terminal C3F22_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F22_17895 PF00512 His Kinase A (phospho-acceptor) domain C3F22_17900 PF00486 Transcriptional regulatory protein, C terminal C3F22_17900 PF00072 Response regulator receiver domain C3F22_17905 PF08019 Phosphoethanolamine transferase EptA/EptB C3F22_17905 PF00884 Sulfatase C3F22_17915 PF03466 LysR substrate binding domain C3F22_17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_17920 PF01925 Sulfite exporter TauE/SafE C3F22_17925 PF01613 Flavin reductase like domain C3F22_17930 PF08267 Cobalamin-independent synthase, N-terminal domain C3F22_17930 PF01717 Cobalamin-independent synthase, Catalytic domain C3F22_17965 PF02677 Epoxyqueuosine reductase QueH C3F22_17990 PF04151 Bacterial pre-peptidase C-terminal domain C3F22_18020 PF12146 Serine aminopeptidase, S33 C3F22_18050 PF06039 Malate:quinone oxidoreductase (Mqo) C3F22_18080 PF00107 Zinc-binding dehydrogenase C3F22_18080 PF16884 N-terminal domain of oxidoreductase C3F22_18085 PF00440 Bacterial regulatory proteins, tetR family C3F22_18085 PF16925 Tetracyclin repressor-like, C-terminal domain C3F22_18095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F22_18105 PF00465 Iron-containing alcohol dehydrogenase C3F22_18130 PF00756 Putative esterase C3F22_18135 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_18135 PF00107 Zinc-binding dehydrogenase C3F22_18140 PF02583 Metal-sensitive transcriptional repressor C3F22_18145 PF16197 Ketoacyl-synthetase C-terminal extension C3F22_18145 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F22_18145 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F22_18145 PF08659 KR domain C3F22_18145 PF14765 Polyketide synthase dehydratase C3F22_18145 PF00550 Phosphopantetheine attachment site C3F22_18145 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_18145 PF00698 Acyl transferase domain C3F22_18150 PF00107 Zinc-binding dehydrogenase C3F22_18150 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_18155 PF03466 LysR substrate binding domain C3F22_18155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F22_18160 PF00106 short chain dehydrogenase C3F22_18165 PF08240 Alcohol dehydrogenase GroES-like domain C3F22_18165 PF00107 Zinc-binding dehydrogenase C3F22_18185 PF00694 Aconitase C-terminal domain C3F22_18185 PF00330 Aconitase family (aconitate hydratase) C3F22_18195 PF01556 DnaJ C terminal domain C3F22_18195 PF00226 DnaJ domain C3F22_18205 PF01850 PIN domain C3F22_18210 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C3F22_18225 PF00916 Sulfate permease family C3F22_18225 PF01740 STAS domain C3F22_18240 PF03389 MobA/MobL family