locus-tag class description C3F34_00005 PF01614 Bacterial transcriptional regulator C3F34_00005 PF09339 IclR helix-turn-helix domain C3F34_00010 PF13520 Amino acid permease C3F34_00015 PF00809 Pterin binding enzyme C3F34_00015 PF02574 Homocysteine S-methyltransferase C3F34_00015 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3F34_00015 PF02607 B12 binding domain C3F34_00015 PF02310 B12 binding domain C3F34_00030 PF00005 ABC transporter C3F34_00045 PF00893 Small Multidrug Resistance protein C3F34_00055 PF08753 NikR C terminal nickel binding domain C3F34_00055 PF01402 Ribbon-helix-helix protein, copG family C3F34_00060 PF00289 Biotin carboxylase, N-terminal domain C3F34_00060 PF02785 Biotin carboxylase C-terminal domain C3F34_00060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F34_00075 PF00990 Diguanylate cyclase, GGDEF domain C3F34_00075 PF05230 MASE2 domain C3F34_00080 PF07690 Major Facilitator Superfamily C3F34_00090 PF01134 Glucose inhibited division protein A C3F34_00090 PF13932 GidA associated domain C3F34_00120 PF02954 Bacterial regulatory protein, Fis family C3F34_00125 PF02142 MGS-like domain C3F34_00125 PF01808 AICARFT/IMPCHase bienzyme C3F34_00130 PF02844 Phosphoribosylglycinamide synthetase, N domain C3F34_00130 PF02843 Phosphoribosylglycinamide synthetase, C domain C3F34_00130 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C3F34_00135 PF12833 Helix-turn-helix domain C3F34_00135 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F34_00140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F34_00140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F34_00145 PF03180 NLPA lipoprotein C3F34_00150 PF00005 ABC transporter C3F34_00150 PF09383 NIL domain C3F34_00155 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_00165 PF02811 PHP domain C3F34_00165 PF01336 OB-fold nucleic acid binding domain C3F34_00165 PF14579 Helix-hairpin-helix motif C3F34_00165 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3F34_00165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3F34_00170 PF00588 SpoU rRNA Methylase family C3F34_00175 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_00195 PF17874 MalT-like TPR region C3F34_00195 PF00196 Bacterial regulatory proteins, luxR family C3F34_00205 PF00501 AMP-binding enzyme C3F34_00205 PF13193 AMP-binding enzyme C-terminal domain C3F34_00210 PF00106 short chain dehydrogenase C3F34_00215 PF00106 short chain dehydrogenase C3F34_00225 PF02028 BCCT, betaine/carnitine/choline family transporter C3F34_00230 PF00440 Bacterial regulatory proteins, tetR family C3F34_00230 PF13977 BetI-type transcriptional repressor, C-terminal C3F34_00235 PF00171 Aldehyde dehydrogenase family C3F34_00240 PF00732 GMC oxidoreductase C3F34_00240 PF05199 GMC oxidoreductase C3F34_00250 PF06039 Malate:quinone oxidoreductase (Mqo) C3F34_00295 PF00171 Aldehyde dehydrogenase family C3F34_00300 PF13520 Amino acid permease C3F34_00305 PF00324 Amino acid permease C3F34_00310 PF01266 FAD dependent oxidoreductase C3F34_00320 PF09618 CRISPR-associated protein (Cas_Csy4) C3F34_00325 PF09615 CRISPR-associated protein (Cas_Csy3) C3F34_00330 PF09614 CRISPR-associated protein (Cas_Csy2) C3F34_00335 PF09611 CRISPR-associated protein (Cas_Csy1) C3F34_00340 PF18019 HD domain C3F34_00345 PF01867 CRISPR associated protein Cas1 C3F34_00350 PF01553 Acyltransferase C3F34_00355 PF01709 Transcriptional regulator C3F34_00365 PF13417 Glutathione S-transferase, N-terminal domain C3F34_00370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_00370 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F34_00380 PF00296 Luciferase-like monooxygenase C3F34_00385 PF03180 NLPA lipoprotein C3F34_00390 PF03180 NLPA lipoprotein C3F34_00395 PF09383 NIL domain C3F34_00395 PF00005 ABC transporter C3F34_00400 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_00405 PF06071 Protein of unknown function (DUF933) C3F34_00405 PF01926 50S ribosome-binding GTPase C3F34_00410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F34_00410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F34_00420 PF00027 Cyclic nucleotide-binding domain C3F34_00420 PF13545 Crp-like helix-turn-helix domain C3F34_00430 PF03591 AzlC protein C3F34_00435 PF05437 Branched-chain amino acid transport protein (AzlD) C3F34_00440 PF02222 ATP-grasp domain C3F34_00445 PF01909 Nucleotidyltransferase domain C3F34_00445 PF08335 GlnD PII-uridylyltransferase C3F34_00445 PF01966 HD domain C3F34_00450 PF00155 Aminotransferase class I and II C3F34_00460 PF01810 LysE type translocator C3F34_00465 PF02311 AraC-like ligand binding domain C3F34_00465 PF12833 Helix-turn-helix domain C3F34_00470 PF00255 Glutathione peroxidase C3F34_00475 PF01641 SelR domain C3F34_00480 PF00155 Aminotransferase class I and II C3F34_00485 PF16123 Hydroxyacylglutathione hydrolase C-terminus C3F34_00485 PF00753 Metallo-beta-lactamase superfamily C3F34_00520 PF05193 Peptidase M16 inactive domain C3F34_00520 PF00675 Insulinase (Peptidase family M16) C3F34_00525 PF02567 Phenazine biosynthesis-like protein C3F34_00535 PF01613 Flavin reductase like domain C3F34_00560 PF00199 Catalase C3F34_00565 PF00849 RNA pseudouridylate synthase C3F34_00600 PF01381 Helix-turn-helix C3F34_00610 PF02151 UvrB/uvrC motif C3F34_00610 PF04851 Type III restriction enzyme, res subunit C3F34_00610 PF17757 UvrB interaction domain C3F34_00610 PF00271 Helicase conserved C-terminal domain C3F34_00610 PF12344 Ultra-violet resistance protein B C3F34_00625 PF13676 TIR domain C3F34_00635 PF03971 Monomeric isocitrate dehydrogenase C3F34_00640 PF03061 Thioesterase superfamily C3F34_00645 PF00576 HIUase/Transthyretin family C3F34_00655 PF07943 Penicillin-binding protein 5, C-terminal domain C3F34_00655 PF00768 D-alanyl-D-alanine carboxypeptidase C3F34_00665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_00670 PF00875 DNA photolyase C3F34_00670 PF03441 FAD binding domain of DNA photolyase C3F34_00675 PF03883 Peroxide stress protein YaaA C3F34_00695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F34_00700 PF01817 Chorismate mutase type II C3F34_00700 PF01842 ACT domain C3F34_00700 PF00800 Prephenate dehydratase C3F34_00705 PF01965 DJ-1/PfpI family C3F34_00710 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_00710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_00710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_00715 PF00375 Sodium:dicarboxylate symporter family C3F34_00720 PF02885 Glycosyl transferase family, helical bundle domain C3F34_00720 PF00591 Glycosyl transferase family, a/b domain C3F34_00725 PF07023 Protein of unknown function (DUF1315) C3F34_00730 PF01513 ATP-NAD kinase C3F34_00735 PF00912 Transglycosylase C3F34_00735 PF00905 Penicillin binding protein transpeptidase domain C3F34_00735 PF14814 Bifunctional transglycosylase second domain C3F34_00745 PF00293 NUDIX domain C3F34_00755 PF08521 Two-component sensor kinase N-terminal C3F34_00755 PF00512 His Kinase A (phospho-acceptor) domain C3F34_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_00760 PF00486 Transcriptional regulatory protein, C terminal C3F34_00760 PF00072 Response regulator receiver domain C3F34_00780 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C3F34_00780 PF00437 Type II/IV secretion system protein C3F34_00790 PF13185 GAF domain C3F34_00790 PF00990 Diguanylate cyclase, GGDEF domain C3F34_00795 PF18389 TrmO C-terminal domain C3F34_00795 PF01980 tRNA-methyltransferase O C3F34_00800 PF00970 Oxidoreductase FAD-binding domain C3F34_00800 PF00175 Oxidoreductase NAD-binding domain C3F34_00830 PF13411 MerR HTH family regulatory protein C3F34_00840 PF00037 4Fe-4S binding domain C3F34_00845 PF13192 Thioredoxin domain C3F34_00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_00855 PF05816 Toxic anion resistance protein (TelA) C3F34_00870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3F34_00870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3F34_00875 PF00271 Helicase conserved C-terminal domain C3F34_00875 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C3F34_00875 PF00270 DEAD/DEAH box helicase C3F34_00875 PF11898 Domain of unknown function (DUF3418) C3F34_00875 PF04408 Helicase associated domain (HA2) C3F34_00880 PF00578 AhpC/TSA family C3F34_00880 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F34_00890 PF01596 O-methyltransferase C3F34_00905 PF00487 Fatty acid desaturase C3F34_00910 PF00175 Oxidoreductase NAD-binding domain C3F34_00910 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_00910 PF00970 Oxidoreductase FAD-binding domain C3F34_00915 PF00440 Bacterial regulatory proteins, tetR family C3F34_00920 PF12137 RNA polymerase recycling family C-terminal C3F34_00920 PF00271 Helicase conserved C-terminal domain C3F34_00920 PF18337 RapA N-terminal Tudor like domain C3F34_00920 PF18339 RapA N-terminal Tudor like domain 1 C3F34_00920 PF00176 SNF2 family N-terminal domain C3F34_00925 PF00849 RNA pseudouridylate synthase C3F34_00930 PF03928 Haem-degrading C3F34_00935 PF00202 Aminotransferase class-III C3F34_00940 PF02581 Thiamine monophosphate synthase C3F34_00945 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F34_00945 PF14760 Rnk N-terminus C3F34_00950 PF00464 Serine hydroxymethyltransferase C3F34_00975 PF01979 Amidohydrolase family C3F34_00980 PF00691 OmpA family C3F34_00980 PF01389 OmpA-like transmembrane domain C3F34_00985 PF05658 Head domain of trimeric autotransporter adhesin C3F34_00985 PF03895 YadA-like membrane anchor domain C3F34_00985 PF13018 Extended Signal Peptide of Type V secretion system C3F34_00985 PF05662 Coiled stalk of trimeric autotransporter adhesin C3F34_00985 PF03895 YadA-like membrane anchor domain C3F34_00985 PF13018 Extended Signal Peptide of Type V secretion system C3F34_00985 PF05658 Head domain of trimeric autotransporter adhesin C3F34_00985 PF05662 Coiled stalk of trimeric autotransporter adhesin C3F34_00990 PF06826 Predicted Permease Membrane Region C3F34_00990 PF02080 TrkA-C domain C3F34_00995 PF00155 Aminotransferase class I and II C3F34_01010 PF07690 Major Facilitator Superfamily C3F34_01015 PF00701 Dihydrodipicolinate synthetase family C3F34_01030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_01030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F34_01030 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_01035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_01035 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_01035 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F34_01040 PF00296 Luciferase-like monooxygenase C3F34_01055 PF00005 ABC transporter C3F34_01060 PF01545 Cation efflux family C3F34_01060 PF16916 Dimerisation domain of Zinc Transporter C3F34_01065 PF01292 Prokaryotic cytochrome b561 C3F34_01070 PF00925 GTP cyclohydrolase II C3F34_01075 PF00290 Tryptophan synthase alpha chain C3F34_01080 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_01085 PF03466 LysR substrate binding domain C3F34_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_01090 PF09297 NADH pyrophosphatase zinc ribbon domain C3F34_01090 PF00293 NUDIX domain C3F34_01110 PF00005 ABC transporter C3F34_01115 PF01061 ABC-2 type transporter C3F34_01120 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C3F34_01120 PF14489 QueF-like protein C3F34_01130 PF01098 Cell cycle protein C3F34_01135 PF13406 Transglycosylase SLT domain C3F34_01140 PF05036 Sporulation related domain C3F34_01140 PF03330 Lytic transglycolase C3F34_01145 PF07969 Amidohydrolase family C3F34_01185 PF00889 Elongation factor TS C3F34_01190 PF00318 Ribosomal protein S2 C3F34_01195 PF00557 Metallopeptidase family M24 C3F34_01205 PF07690 Major Facilitator Superfamily C3F34_01215 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3F34_01220 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_01220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F34_01225 PF04055 Radical SAM superfamily C3F34_01235 PF03069 Acetamidase/Formamidase family C3F34_01255 PF03466 LysR substrate binding domain C3F34_01255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_01260 PF01144 Coenzyme A transferase C3F34_01265 PF01144 Coenzyme A transferase C3F34_01270 PF00108 Thiolase, N-terminal domain C3F34_01270 PF02803 Thiolase, C-terminal domain C3F34_01280 PF00331 Glycosyl hydrolase family 10 C3F34_01280 PF07859 alpha/beta hydrolase fold C3F34_01285 PF02769 AIR synthase related protein, C-terminal domain C3F34_01285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C3F34_01285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C3F34_01290 PF01966 HD domain C3F34_01295 PF01330 RuvA N terminal domain C3F34_01295 PF07499 RuvA, C-terminal domain C3F34_01300 PF17864 RuvB AAA lid domain C3F34_01300 PF05496 Holliday junction DNA helicase RuvB P-loop domain C3F34_01300 PF05491 RuvB C-terminal winged helix domain C3F34_01455 PF04860 Phage portal protein C3F34_01460 PF03354 Phage Terminase C3F34_01520 PF00149 Calcineurin-like phosphoesterase C3F34_01645 PF03061 Thioesterase superfamily C3F34_01650 PF01618 MotA/TolQ/ExbB proton channel family C3F34_01655 PF02472 Biopolymer transport protein ExbD/TolR C3F34_01665 PF07676 WD40-like Beta Propeller Repeat C3F34_01665 PF04052 TolB amino-terminal domain C3F34_01670 PF00691 OmpA family C3F34_01680 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C3F34_01685 PF00588 SpoU rRNA Methylase family C3F34_01685 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3F34_01725 PF11638 DnaA N-terminal domain C3F34_01725 PF00308 Bacterial dnaA protein C3F34_01725 PF08299 Bacterial dnaA protein helix-turn-helix C3F34_01730 PF01594 AI-2E family transporter C3F34_01735 PF00586 AIR synthase related protein, N-terminal domain C3F34_01735 PF02769 AIR synthase related protein, C-terminal domain C3F34_01740 PF00551 Formyl transferase C3F34_01750 PF01343 Peptidase family S49 C3F34_01750 PF06965 Na+/H+ antiporter 1 C3F34_01760 PF03772 Competence protein C3F34_01760 PF13567 Domain of unknown function (DUF4131) C3F34_01760 PF00753 Metallo-beta-lactamase superfamily C3F34_01765 PF00005 ABC transporter C3F34_01770 PF02687 FtsX-like permease family C3F34_01770 PF12704 MacB-like periplasmic core domain C3F34_01785 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C3F34_01795 PF00266 Aminotransferase class-V C3F34_01805 PF13533 Biotin-lipoyl like C3F34_01825 PF00375 Sodium:dicarboxylate symporter family C3F34_01835 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F34_01835 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F34_01840 PF00766 Electron transfer flavoprotein FAD-binding domain C3F34_01840 PF01012 Electron transfer flavoprotein domain C3F34_01845 PF01012 Electron transfer flavoprotein domain C3F34_01850 PF01810 LysE type translocator C3F34_01855 PF01037 Lrp/AsnC ligand binding domain C3F34_01860 PF13302 Acetyltransferase (GNAT) domain C3F34_01870 PF00589 Phage integrase family C3F34_01870 PF02899 Phage integrase, N-terminal SAM-like domain C3F34_01875 PF00561 alpha/beta hydrolase fold C3F34_01880 PF01678 Diaminopimelate epimerase C3F34_01885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3F34_01885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F34_01895 PF00324 Amino acid permease C3F34_01900 PF01235 Sodium:alanine symporter family C3F34_01905 PF18073 Rubredoxin metal binding domain C3F34_01915 PF03848 Tellurite resistance protein TehB C3F34_01915 PF09313 Domain of unknown function (DUF1971) C3F34_01920 PF00009 Elongation factor Tu GTP binding domain C3F34_01925 PF01507 Phosphoadenosine phosphosulfate reductase family C3F34_01940 PF01040 UbiA prenyltransferase family C3F34_01945 PF04345 Chorismate lyase C3F34_01965 PF00892 EamA-like transporter family C3F34_01990 PF00330 Aconitase family (aconitate hydratase) C3F34_01990 PF00694 Aconitase C-terminal domain C3F34_01995 PF00285 Citrate synthase, C-terminal domain C3F34_02005 PF07729 FCD domain C3F34_02005 PF00392 Bacterial regulatory proteins, gntR family C3F34_02015 PF13411 MerR HTH family regulatory protein C3F34_02020 PF01812 5-formyltetrahydrofolate cyclo-ligase family C3F34_02025 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_02025 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F34_02025 PF02190 ATP-dependent protease La (LON) substrate-binding domain C3F34_02035 PF04389 Peptidase family M28 C3F34_02040 PF02590 Predicted SPOUT methyltransferase C3F34_02045 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3F34_02055 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3F34_02055 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3F34_02060 PF04060 Putative Fe-S cluster C3F34_02085 PF05191 Adenylate kinase, active site lid C3F34_02125 PF01494 FAD binding domain C3F34_02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_02135 PF03466 LysR substrate binding domain C3F34_02140 PF07690 Major Facilitator Superfamily C3F34_02145 PF00440 Bacterial regulatory proteins, tetR family C3F34_02150 PF03061 Thioesterase superfamily C3F34_02155 PF01734 Patatin-like phospholipase C3F34_02160 PF01235 Sodium:alanine symporter family C3F34_02165 PF03616 Sodium/glutamate symporter C3F34_02180 PF04228 Putative neutral zinc metallopeptidase C3F34_02185 PF05661 Protein of unknown function (DUF808) C3F34_02190 PF00579 tRNA synthetases class I (W and Y) C3F34_02195 PF07290 Protein of unknown function (DUF1449) C3F34_02200 PF15975 Flotillin C3F34_02200 PF01145 SPFH domain / Band 7 family C3F34_02220 PF02727 Copper amine oxidase, N2 domain C3F34_02220 PF01179 Copper amine oxidase, enzyme domain C3F34_02220 PF07833 Copper amine oxidase N-terminal domain C3F34_02220 PF02728 Copper amine oxidase, N3 domain C3F34_02230 PF00549 CoA-ligase C3F34_02230 PF02629 CoA binding domain C3F34_02235 PF00549 CoA-ligase C3F34_02235 PF08442 ATP-grasp domain C3F34_02240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F34_02240 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_02245 PF02817 e3 binding domain C3F34_02245 PF00364 Biotin-requiring enzyme C3F34_02245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F34_02250 PF16870 2-oxoglutarate dehydrogenase C-terminal C3F34_02250 PF00676 Dehydrogenase E1 component C3F34_02250 PF02779 Transketolase, pyrimidine binding domain C3F34_02250 PF16078 2-oxoglutarate dehydrogenase N-terminus C3F34_02255 PF13085 2Fe-2S iron-sulfur cluster binding domain C3F34_02260 PF00890 FAD binding domain C3F34_02260 PF02910 Fumarate reductase flavoprotein C-term C3F34_02265 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F34_02270 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F34_02275 PF00285 Citrate synthase, C-terminal domain C3F34_02280 PF00743 Flavin-binding monooxygenase-like C3F34_02285 PF00106 short chain dehydrogenase C3F34_02300 PF00795 Carbon-nitrogen hydrolase C3F34_02300 PF02540 NAD synthase C3F34_02320 PF00037 4Fe-4S binding domain C3F34_02325 PF01467 Cytidylyltransferase-like C3F34_02330 PF01668 SmpB protein C3F34_02335 PF03358 NADPH-dependent FMN reductase C3F34_02345 PF01479 S4 domain C3F34_02345 PF00849 RNA pseudouridylate synthase C3F34_02350 PF13525 Outer membrane lipoprotein C3F34_02355 PF10410 DnaB-helicase binding domain of primase C3F34_02355 PF01807 CHC2 zinc finger C3F34_02355 PF08275 DNA primase catalytic core, N-terminal domain C3F34_02355 PF08278 DNA primase DnaG DnaB-binding C3F34_02360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C3F34_02360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C3F34_02360 PF01488 Shikimate / quinate 5-dehydrogenase C3F34_02370 PF03550 Outer membrane lipoprotein LolB C3F34_02375 PF00288 GHMP kinases N terminal domain C3F34_02375 PF08544 GHMP kinases C terminal C3F34_02400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C3F34_02400 PF14572 Phosphoribosyl synthetase-associated domain C3F34_02405 PF01386 Ribosomal L25p family C3F34_02410 PF01195 Peptidyl-tRNA hydrolase C3F34_02415 PF02261 Aspartate decarboxylase C3F34_02420 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F34_02425 PF01810 LysE type translocator C3F34_02450 PF09335 SNARE associated Golgi protein C3F34_02460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_02460 PF03466 LysR substrate binding domain C3F34_02465 PF01810 LysE type translocator C3F34_02480 PF03979 Sigma-70 factor, region 1.1 C3F34_02480 PF04545 Sigma-70, region 4 C3F34_02480 PF00140 Sigma-70 factor, region 1.2 C3F34_02480 PF04539 Sigma-70 region 3 C3F34_02480 PF04546 Sigma-70, non-essential region C3F34_02480 PF04542 Sigma-70 region 2 C3F34_02485 PF04359 Protein of unknown function (DUF493) C3F34_02490 PF03099 Biotin/lipoate A/B protein ligase family C3F34_02500 PF00465 Iron-containing alcohol dehydrogenase C3F34_02505 PF13520 Amino acid permease C3F34_02510 PF03358 NADPH-dependent FMN reductase C3F34_02525 PF00588 SpoU rRNA Methylase family C3F34_02530 PF10414 Sirohaem synthase dimerisation region C3F34_02530 PF14824 Sirohaem biosynthesis protein central C3F34_02530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F34_02535 PF02403 Seryl-tRNA synthetase N-terminal domain C3F34_02535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F34_02545 PF03548 Outer membrane lipoprotein carrier protein LolA C3F34_02555 PF01016 Ribosomal L27 protein C3F34_02560 PF00829 Ribosomal prokaryotic L21 protein C3F34_02565 PF00348 Polyprenyl synthetase C3F34_02575 PF01569 PAP2 superfamily C3F34_02580 PF00529 HlyD membrane-fusion protein of T1SS C3F34_02580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_02585 PF00873 AcrB/AcrD/AcrF family C3F34_02590 PF02321 Outer membrane efflux protein C3F34_02595 PF01906 Putative heavy-metal-binding C3F34_02600 PF01906 Putative heavy-metal-binding C3F34_02620 PF08264 Anticodon-binding domain of tRNA C3F34_02620 PF00133 tRNA synthetases class I (I, L, M and V) C3F34_02620 PF10458 Valyl tRNA synthetase tRNA binding arm C3F34_02665 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_02670 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_02675 PF00005 ABC transporter C3F34_02680 PF00909 Ammonium Transporter Family C3F34_02685 PF13419 Haloacid dehalogenase-like hydrolase C3F34_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_02695 PF00512 His Kinase A (phospho-acceptor) domain C3F34_02695 PF08521 Two-component sensor kinase N-terminal C3F34_02700 PF00072 Response regulator receiver domain C3F34_02700 PF00486 Transcriptional regulatory protein, C terminal C3F34_02705 PF00884 Sulfatase C3F34_02705 PF08019 Phosphoethanolamine transferase EptA/EptB C3F34_02710 PF00267 Gram-negative porin C3F34_02720 PF07690 Major Facilitator Superfamily C3F34_02730 PF01734 Patatin-like phospholipase C3F34_02740 PF01145 SPFH domain / Band 7 family C3F34_02750 PF00474 Sodium:solute symporter family C3F34_02755 PF00348 Polyprenyl synthetase C3F34_02760 PF00990 Diguanylate cyclase, GGDEF domain C3F34_02760 PF07694 5TMR of 5TMR-LYT C3F34_02765 PF04303 PrpF protein C3F34_02770 PF00324 Amino acid permease C3F34_02790 PF00486 Transcriptional regulatory protein, C terminal C3F34_02790 PF00072 Response regulator receiver domain C3F34_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_02795 PF02702 Osmosensitive K+ channel His kinase sensor domain C3F34_02795 PF00512 His Kinase A (phospho-acceptor) domain C3F34_02795 PF13493 Domain of unknown function (DUF4118) C3F34_02795 PF13492 GAF domain C3F34_02800 PF02669 K+-transporting ATPase, c chain C3F34_02810 PF03814 Potassium-transporting ATPase A subunit C3F34_02830 PF10996 Beta-Casp domain C3F34_02830 PF00753 Metallo-beta-lactamase superfamily C3F34_02830 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C3F34_02840 PF06100 MCRA family C3F34_02860 PF13533 Biotin-lipoyl like C3F34_02865 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_02875 PF05552 Conserved TM helix C3F34_02880 PF05985 Ethanolamine ammonia-lyase light chain (EutC) C3F34_02885 PF06751 Ethanolamine ammonia lyase large subunit (EutB) C3F34_02890 PF13520 Amino acid permease C3F34_02900 PF00175 Oxidoreductase NAD-binding domain C3F34_02900 PF00970 Oxidoreductase FAD-binding domain C3F34_02905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_02905 PF03466 LysR substrate binding domain C3F34_02910 PF00313 'Cold-shock' DNA-binding domain C3F34_02915 PF00313 'Cold-shock' DNA-binding domain C3F34_02925 PF00361 Proton-conducting membrane transporter C3F34_02930 PF00361 Proton-conducting membrane transporter C3F34_02935 PF00361 Proton-conducting membrane transporter C3F34_02935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3F34_02940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3F34_02945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C3F34_02950 PF12838 4Fe-4S dicluster domain C3F34_02955 PF00146 NADH dehydrogenase C3F34_02960 PF00384 Molybdopterin oxidoreductase C3F34_02960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C3F34_02960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F34_02965 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C3F34_02965 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C3F34_02965 PF10531 SLBB domain C3F34_02975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C3F34_02975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C3F34_02980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C3F34_02985 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C3F34_02995 PF00672 HAMP domain C3F34_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_02995 PF00512 His Kinase A (phospho-acceptor) domain C3F34_03000 PF00072 Response regulator receiver domain C3F34_03000 PF00486 Transcriptional regulatory protein, C terminal C3F34_03005 PF02867 Ribonucleotide reductase, barrel domain C3F34_03005 PF00317 Ribonucleotide reductase, all-alpha domain C3F34_03005 PF03477 ATP cone domain C3F34_03015 PF00268 Ribonucleotide reductase, small chain C3F34_03025 PF01389 OmpA-like transmembrane domain C3F34_03025 PF00691 OmpA family C3F34_03030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_03030 PF00529 HlyD membrane-fusion protein of T1SS C3F34_03035 PF03412 Peptidase C39 family C3F34_03035 PF00005 ABC transporter C3F34_03035 PF00664 ABC transporter transmembrane region C3F34_03045 PF00550 Phosphopantetheine attachment site C3F34_03055 PF00698 Acyl transferase domain C3F34_03060 PF01783 Ribosomal L32p protein family C3F34_03065 PF02620 Large ribosomal RNA subunit accumulation protein YceD C3F34_03070 PF04315 Elongation factor P hydroxylase C3F34_03075 PF01300 Telomere recombination C3F34_03080 PF02616 Segregation and condensation protein ScpA C3F34_03085 PF04079 Segregation and condensation complex subunit ScpB C3F34_03090 PF01479 S4 domain C3F34_03090 PF00849 RNA pseudouridylate synthase C3F34_03095 PF00005 ABC transporter C3F34_03095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F34_03100 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_03105 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_03110 PF01432 Peptidase family M3 C3F34_03120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F34_03135 PF01618 MotA/TolQ/ExbB proton channel family C3F34_03140 PF02472 Biopolymer transport protein ExbD/TolR C3F34_03145 PF02472 Biopolymer transport protein ExbD/TolR C3F34_03160 PF08241 Methyltransferase domain C3F34_03165 PF00155 Aminotransferase class I and II C3F34_03170 PF00202 Aminotransferase class-III C3F34_03170 PF06968 Biotin and Thiamin Synthesis associated domain C3F34_03170 PF04055 Radical SAM superfamily C3F34_03175 PF12697 Alpha/beta hydrolase family C3F34_03175 PF08241 Methyltransferase domain C3F34_03180 PF00578 AhpC/TSA family C3F34_03190 PF00210 Ferritin-like domain C3F34_03195 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family C3F34_03200 PF01653 NAD-dependent DNA ligase adenylation domain C3F34_03200 PF12826 Helix-hairpin-helix motif C3F34_03200 PF03120 NAD-dependent DNA ligase OB-fold domain C3F34_03200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3F34_03200 PF00533 BRCA1 C Terminus (BRCT) domain C3F34_03210 PF02463 RecF/RecN/SMC N terminal domain C3F34_03210 PF06470 SMC proteins Flexible Hinge Domain C3F34_03220 PF01925 Sulfite exporter TauE/SafE C3F34_03225 PF03099 Biotin/lipoate A/B protein ligase family C3F34_03225 PF02237 Biotin protein ligase C terminal domain C3F34_03225 PF08279 HTH domain C3F34_03230 PF03309 Type III pantothenate kinase C3F34_03240 PF02978 Signal peptide binding domain C3F34_03240 PF00448 SRP54-type protein, GTPase domain C3F34_03240 PF02881 SRP54-type protein, helical bundle domain C3F34_03260 PF01638 HxlR-like helix-turn-helix C3F34_03265 PF00376 MerR family regulatory protein C3F34_03265 PF09278 MerR, DNA binding C3F34_03275 PF01207 Dihydrouridine synthase (Dus) C3F34_03285 PF07411 Domain of unknown function (DUF1508) C3F34_03295 PF08274 PhnA Zinc-Ribbon C3F34_03295 PF03831 PhnA domain C3F34_03305 PF04343 Protein of unknown function, DUF488 C3F34_03325 PF00849 RNA pseudouridylate synthase C3F34_03360 PF01571 Aminomethyltransferase folate-binding domain C3F34_03380 PF01507 Phosphoadenosine phosphosulfate reductase family C3F34_03385 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C3F34_03385 PF06974 Protein of unknown function (DUF1298) C3F34_03390 PF00575 S1 RNA binding domain C3F34_03390 PF10150 Ribonuclease E/G family C3F34_03395 PF02545 Maf-like protein C3F34_03400 PF04093 rod shape-determining protein MreD C3F34_03405 PF04085 rod shape-determining protein MreC C3F34_03415 PF02686 Glu-tRNAGln amidotransferase C subunit C3F34_03420 PF01425 Amidase C3F34_03425 PF02934 GatB/GatE catalytic domain C3F34_03425 PF02637 GatB domain C3F34_03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_03445 PF03466 LysR substrate binding domain C3F34_03480 PF05992 SbmA/BacA-like family C3F34_03495 PF03547 Membrane transport protein C3F34_03500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_03505 PF06827 Zinc finger found in FPG and IleRS C3F34_03505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3F34_03505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3F34_03510 PF00639 PPIC-type PPIASE domain C3F34_03510 PF09312 SurA N-terminal domain C3F34_03520 PF01741 Large-conductance mechanosensitive channel, MscL C3F34_03530 PF00860 Permease family C3F34_03535 PF05175 Methyltransferase small domain C3F34_03535 PF08468 Methyltransferase small domain N-terminal C3F34_03540 PF00324 Amino acid permease C3F34_03545 PF01168 Alanine racemase, N-terminal domain C3F34_03550 PF00437 Type II/IV secretion system protein C3F34_03555 PF00437 Type II/IV secretion system protein C3F34_03560 PF13505 Outer membrane protein beta-barrel domain C3F34_03560 PF00691 OmpA family C3F34_03570 PF02803 Thiolase, C-terminal domain C3F34_03570 PF00108 Thiolase, N-terminal domain C3F34_03590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F34_03590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F34_03595 PF01011 PQQ enzyme repeat C3F34_03600 PF04966 Carbohydrate-selective porin, OprB family C3F34_03605 PF02515 CoA-transferase family III C3F34_03610 PF12833 Helix-turn-helix domain C3F34_03610 PF02311 AraC-like ligand binding domain C3F34_03625 PF00108 Thiolase, N-terminal domain C3F34_03625 PF02803 Thiolase, C-terminal domain C3F34_03630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F34_03630 PF00378 Enoyl-CoA hydratase/isomerase C3F34_03630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F34_03645 PF13673 Acetyltransferase (GNAT) domain C3F34_03655 PF03006 Haemolysin-III related C3F34_03660 PF07690 Major Facilitator Superfamily C3F34_03660 PF00083 Sugar (and other) transporter C3F34_03665 PF00149 Calcineurin-like phosphoesterase C3F34_03670 PF13091 PLD-like domain C3F34_03680 PF13167 GTP-binding GTPase N-terminal C3F34_03680 PF01926 50S ribosome-binding GTPase C3F34_03680 PF16360 GTP-binding GTPase Middle Region C3F34_03705 PF00149 Calcineurin-like phosphoesterase C3F34_03710 PF00398 Ribosomal RNA adenine dimethylase C3F34_03715 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C3F34_03720 PF00572 Ribosomal protein L13 C3F34_03725 PF00380 Ribosomal protein S9/S16 C3F34_03730 PF00043 Glutathione S-transferase, C-terminal domain C3F34_03730 PF02798 Glutathione S-transferase, N-terminal domain C3F34_03735 PF04386 Stringent starvation protein B C3F34_03795 PF00990 Diguanylate cyclase, GGDEF domain C3F34_03795 PF17152 Periplasmic sensor domain C3F34_03825 PF02445 Quinolinate synthetase A protein C3F34_03830 PF01960 ArgJ family C3F34_03840 PF02810 SEC-C motif C3F34_03840 PF07517 SecA DEAD-like domain C3F34_03840 PF01043 SecA preprotein cross-linking domain C3F34_03840 PF07516 SecA Wing and Scaffold domain C3F34_03845 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F34_03845 PF00578 AhpC/TSA family C3F34_03850 PF00753 Metallo-beta-lactamase superfamily C3F34_03865 PF02875 Mur ligase family, glutamate ligase domain C3F34_03865 PF08245 Mur ligase middle domain C3F34_03870 PF01039 Carboxyl transferase domain C3F34_03875 PF00290 Tryptophan synthase alpha chain C3F34_03885 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F34_03885 PF12833 Helix-turn-helix domain C3F34_03905 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_03910 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C3F34_03915 PF00593 TonB dependent receptor C3F34_03915 PF07715 TonB-dependent Receptor Plug Domain C3F34_03920 PF01923 Cobalamin adenosyltransferase C3F34_03945 PF04237 YjbR C3F34_03950 PF00324 Amino acid permease C3F34_03955 PF00072 Response regulator receiver domain C3F34_03955 PF00486 Transcriptional regulatory protein, C terminal C3F34_03960 PF00672 HAMP domain C3F34_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_03960 PF00512 His Kinase A (phospho-acceptor) domain C3F34_03970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_03970 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F34_03970 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_03970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_03975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_03975 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_03975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_03975 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F34_03980 PF06146 Phosphate-starvation-inducible E C3F34_04000 PF07715 TonB-dependent Receptor Plug Domain C3F34_04000 PF00593 TonB dependent receptor C3F34_04010 PF00152 tRNA synthetases class II (D, K and N) C3F34_04010 PF01336 OB-fold nucleic acid binding domain C3F34_04010 PF02938 GAD domain C3F34_04030 PF00535 Glycosyl transferase family 2 C3F34_04035 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C3F34_04040 PF00483 Nucleotidyl transferase C3F34_04045 PF04321 RmlD substrate binding domain C3F34_04050 PF16363 GDP-mannose 4,6 dehydratase C3F34_04065 PF01522 Polysaccharide deacetylase C3F34_04075 PF01063 Amino-transferase class IV C3F34_04080 PF03710 Glutamate-ammonia ligase adenylyltransferase C3F34_04080 PF08335 GlnD PII-uridylyltransferase C3F34_04085 PF00512 His Kinase A (phospho-acceptor) domain C3F34_04085 PF00989 PAS fold C3F34_04085 PF13188 PAS domain C3F34_04085 PF13426 PAS domain C3F34_04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_04090 PF00990 Diguanylate cyclase, GGDEF domain C3F34_04090 PF00072 Response regulator receiver domain C3F34_04095 PF03707 Bacterial signalling protein N terminal repeat C3F34_04095 PF00563 EAL domain C3F34_04095 PF00990 Diguanylate cyclase, GGDEF domain C3F34_04100 PF11818 C-terminal domain of tail specific protease (DUF3340) C3F34_04100 PF17804 Tail specific protease N-terminal domain C3F34_04100 PF03572 Peptidase family S41 C3F34_04100 PF00595 PDZ domain C3F34_04105 PF00933 Glycosyl hydrolase family 3 N terminal domain C3F34_04120 PF00171 Aldehyde dehydrogenase family C3F34_04130 PF00871 Acetokinase family C3F34_04135 PF07085 DRTGG domain C3F34_04135 PF01515 Phosphate acetyl/butaryl transferase C3F34_04145 PF13649 Methyltransferase domain C3F34_04150 PF00892 EamA-like transporter family C3F34_04160 PF05681 Fumarate hydratase (Fumerase) C3F34_04160 PF05683 Fumarase C-terminus C3F34_04175 PF10431 C-terminal, D2-small domain, of ClpB protein C3F34_04175 PF06689 ClpX C4-type zinc finger C3F34_04175 PF07724 AAA domain (Cdc48 subfamily) C3F34_04180 PF00574 Clp protease C3F34_04185 PF05697 Bacterial trigger factor protein (TF) C3F34_04185 PF05698 Bacterial trigger factor protein (TF) C-terminus C3F34_04185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_04190 PF07715 TonB-dependent Receptor Plug Domain C3F34_04190 PF00593 TonB dependent receptor C3F34_04195 PF00593 TonB dependent receptor C3F34_04195 PF07715 TonB-dependent Receptor Plug Domain C3F34_04200 PF18331 PKHD-type hydroxylase C-terminal domain C3F34_04200 PF13640 2OG-Fe(II) oxygenase superfamily C3F34_04205 PF08502 LeuA allosteric (dimerisation) domain C3F34_04205 PF00682 HMGL-like C3F34_04210 PF00561 alpha/beta hydrolase fold C3F34_04215 PF00561 alpha/beta hydrolase fold C3F34_04215 PF07021 Methionine biosynthesis protein MetW C3F34_04230 PF01725 Ham1 family C3F34_04240 PF02416 mttA/Hcf106 family C3F34_04245 PF02416 mttA/Hcf106 family C3F34_04250 PF00902 Sec-independent protein translocase protein (TatC) C3F34_04265 PF01790 Prolipoprotein diacylglyceryl transferase C3F34_04285 PF00303 Thymidylate synthase C3F34_04290 PF00186 Dihydrofolate reductase C3F34_04305 PF01625 Peptide methionine sulfoxide reductase C3F34_04315 PF01618 MotA/TolQ/ExbB proton channel family C3F34_04325 PF00551 Formyl transferase C3F34_04325 PF01842 ACT domain C3F34_04330 PF08360 QacR-like protein, C-terminal region C3F34_04330 PF00440 Bacterial regulatory proteins, tetR family C3F34_04335 PF00171 Aldehyde dehydrogenase family C3F34_04340 PF00830 Ribosomal L28 family C3F34_04345 PF00471 Ribosomal protein L33 C3F34_04350 PF00999 Sodium/hydrogen exchanger family C3F34_04350 PF02254 TrkA-N domain C3F34_04370 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C3F34_04375 PF00580 UvrD/REP helicase N-terminal domain C3F34_04375 PF13361 UvrD-like helicase C-terminal domain C3F34_04380 PF02595 Glycerate kinase family C3F34_04400 PF01396 Topoisomerase DNA binding C4 zinc finger C3F34_04400 PF01131 DNA topoisomerase C3F34_04400 PF08272 Topoisomerase I zinc-ribbon-like C3F34_04400 PF01751 Toprim domain C3F34_04415 PF04102 SlyX C3F34_04435 PF03279 Bacterial lipid A biosynthesis acyltransferase C3F34_04455 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F34_04455 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F34_04470 PF17763 Glutaminase/Asparaginase C-terminal domain C3F34_04470 PF00710 Asparaginase, N-terminal C3F34_04475 PF01416 tRNA pseudouridine synthase C3F34_04485 PF01176 Translation initiation factor 1A / IF-1 C3F34_04495 PF00180 Isocitrate/isopropylmalate dehydrogenase C3F34_04505 PF00694 Aconitase C-terminal domain C3F34_04510 PF00330 Aconitase family (aconitate hydratase) C3F34_04520 PF03466 LysR substrate binding domain C3F34_04520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_04540 PF00293 NUDIX domain C3F34_04545 PF01590 GAF domain C3F34_04545 PF05524 PEP-utilising enzyme, N-terminal C3F34_04545 PF00391 PEP-utilising enzyme, mobile domain C3F34_04545 PF02896 PEP-utilising enzyme, TIM barrel domain C3F34_04555 PF01047 MarR family C3F34_04565 PF18158 Adaptive response protein AidB N-terminal domain C3F34_04565 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_04565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_04575 PF01810 LysE type translocator C3F34_04580 PF03466 LysR substrate binding domain C3F34_04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_04585 PF00141 Peroxidase C3F34_04590 PF04134 Protein of unknown function, DUF393 C3F34_04600 PF12706 Beta-lactamase superfamily domain C3F34_04605 PF14759 Reductase C-terminal C3F34_04605 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_04610 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3F34_04615 PF00106 short chain dehydrogenase C3F34_04620 PF00355 Rieske [2Fe-2S] domain C3F34_04625 PF00866 Ring hydroxylating beta subunit C3F34_04630 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F34_04630 PF00355 Rieske [2Fe-2S] domain C3F34_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_04635 PF03466 LysR substrate binding domain C3F34_04645 PF00561 alpha/beta hydrolase fold C3F34_04650 PF03573 outer membrane porin, OprD family C3F34_04655 PF07836 DmpG-like communication domain C3F34_04655 PF00682 HMGL-like C3F34_04660 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F34_04660 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation C3F34_04665 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3F34_04675 PF02798 Glutathione S-transferase, N-terminal domain C3F34_04680 PF13280 WYL domain C3F34_04680 PF08279 HTH domain C3F34_04685 PF13419 Haloacid dehalogenase-like hydrolase C3F34_04690 PF01479 S4 domain C3F34_04690 PF00849 RNA pseudouridylate synthase C3F34_04700 PF00575 S1 RNA binding domain C3F34_04700 PF10150 Ribonuclease E/G family C3F34_04700 PF12111 Polyribonucleotide phosphorylase C terminal C3F34_04705 PF00501 AMP-binding enzyme C3F34_04705 PF13193 AMP-binding enzyme C-terminal domain C3F34_04730 PF04024 PspC domain C3F34_04745 PF02091 Glycyl-tRNA synthetase alpha subunit C3F34_04750 PF02092 Glycyl-tRNA synthetase beta subunit C3F34_04750 PF05746 DALR anticodon binding domain C3F34_04775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F34_04775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F34_04800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3F34_04800 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_04820 PF03884 DNA gyrase inhibitor YacG C3F34_04835 PF00753 Metallo-beta-lactamase superfamily C3F34_04840 PF00762 Ferrochelatase C3F34_04850 PF01177 Asp/Glu/Hydantoin racemase C3F34_04870 PF01206 Sulfurtransferase TusA C3F34_04875 PF03471 Transporter associated domain C3F34_04875 PF00571 CBS domain C3F34_04880 PF00795 Carbon-nitrogen hydrolase C3F34_04890 PF07963 Prokaryotic N-terminal methylation motif C3F34_04890 PF08334 Type II secretion system (T2SS), protein G C3F34_04895 PF00482 Type II secretion system (T2SS), protein F C3F34_04900 PF00271 Helicase conserved C-terminal domain C3F34_04900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C3F34_04900 PF18074 Primosomal protein N C-terminal domain C3F34_04900 PF17764 3′ DNA-binding domain (3′BD) C3F34_04900 PF00270 DEAD/DEAH box helicase C3F34_04905 PF02254 TrkA-N domain C3F34_04905 PF00999 Sodium/hydrogen exchanger family C3F34_04910 PF01430 Hsp33 protein C3F34_04920 PF00226 DnaJ domain C3F34_04920 PF01556 DnaJ C terminal domain C3F34_04930 PF04325 Protein of unknown function (DUF465) C3F34_04935 PF01544 CorA-like Mg2+ transporter protein C3F34_04940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C3F34_04940 PF01138 3' exoribonuclease family, domain 1 C3F34_04940 PF03725 3' exoribonuclease family, domain 2 C3F34_04940 PF00575 S1 RNA binding domain C3F34_04940 PF00013 KH domain C3F34_04945 PF00312 Ribosomal protein S15 C3F34_04950 PF13538 UvrD-like helicase C-terminal domain C3F34_04955 PF12705 PD-(D/E)XK nuclease superfamily C3F34_04955 PF13361 UvrD-like helicase C-terminal domain C3F34_04955 PF00580 UvrD/REP helicase N-terminal domain C3F34_04960 PF17946 RecC C-terminal domain C3F34_04970 PF03976 Polyphosphate kinase 2 (PPK2) C3F34_04980 PF01209 ubiE/COQ5 methyltransferase family C3F34_04990 PF03109 ABC1 family C3F34_05000 PF01502 Phosphoribosyl-AMP cyclohydrolase C3F34_05020 PF00361 Proton-conducting membrane transporter C3F34_05020 PF13244 Domain of unknown function (DUF4040) C3F34_05020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C3F34_05020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3F34_05025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3F34_05030 PF00361 Proton-conducting membrane transporter C3F34_05040 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C3F34_05050 PF02033 Ribosome-binding factor A C3F34_05055 PF08364 Bacterial translation initiation factor IF-2 associated region C3F34_05055 PF04760 Translation initiation factor IF-2, N-terminal region C3F34_05055 PF00009 Elongation factor Tu GTP binding domain C3F34_05055 PF11987 Translation-initiation factor 2 C3F34_05060 PF08529 NusA N-terminal domain C3F34_05060 PF13184 NusA-like KH domain C3F34_05060 PF00575 S1 RNA binding domain C3F34_05065 PF17384 RimP C-terminal SH3 domain C3F34_05065 PF02576 RimP N-terminal domain C3F34_05090 PF03840 Preprotein translocase SecG subunit C3F34_05095 PF00121 Triosephosphate isomerase C3F34_05100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C3F34_05100 PF00437 Type II/IV secretion system protein C3F34_05105 PF00482 Type II secretion system (T2SS), protein F C3F34_05110 PF06750 Bacterial Peptidase A24 N-terminal domain C3F34_05110 PF01478 Type IV leader peptidase family C3F34_05115 PF01121 Dephospho-CoA kinase C3F34_05125 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3F34_05125 PF00588 SpoU rRNA Methylase family C3F34_05130 PF06865 Pyrimidine/purine nucleoside phosphorylase C3F34_05135 PF02463 RecF/RecN/SMC N terminal domain C3F34_05140 PF02622 Uncharacterized ACR, COG1678 C3F34_05145 PF03652 Holliday junction resolvase C3F34_05150 PF13533 Biotin-lipoyl like C3F34_05160 PF04632 Fusaric acid resistance protein family C3F34_05170 PF01066 CDP-alcohol phosphatidyltransferase C3F34_05180 PF08459 UvrC Helix-hairpin-helix N-terminal C3F34_05180 PF02151 UvrB/uvrC motif C3F34_05180 PF01541 GIY-YIG catalytic domain C3F34_05185 PF01638 HxlR-like helix-turn-helix C3F34_05190 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_05190 PF00107 Zinc-binding dehydrogenase C3F34_05210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F34_05210 PF00378 Enoyl-CoA hydratase/isomerase C3F34_05210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F34_05215 PF02803 Thiolase, C-terminal domain C3F34_05215 PF00108 Thiolase, N-terminal domain C3F34_05240 PF01323 DSBA-like thioredoxin domain C3F34_05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_05270 PF00183 Hsp90 protein C3F34_05285 PF13726 Na+-H+ antiporter family C3F34_05285 PF03553 Na+/H+ antiporter family C3F34_05290 PF00561 alpha/beta hydrolase fold C3F34_05310 PF00623 RNA polymerase Rpb1, domain 2 C3F34_05310 PF04997 RNA polymerase Rpb1, domain 1 C3F34_05310 PF04998 RNA polymerase Rpb1, domain 5 C3F34_05310 PF05000 RNA polymerase Rpb1, domain 4 C3F34_05310 PF04983 RNA polymerase Rpb1, domain 3 C3F34_05315 PF04563 RNA polymerase beta subunit C3F34_05315 PF04565 RNA polymerase Rpb2, domain 3 C3F34_05315 PF04561 RNA polymerase Rpb2, domain 2 C3F34_05315 PF00562 RNA polymerase Rpb2, domain 6 C3F34_05315 PF04560 RNA polymerase Rpb2, domain 7 C3F34_05315 PF10385 RNA polymerase beta subunit external 1 domain C3F34_05320 PF16320 Ribosomal protein L7/L12 dimerisation domain C3F34_05320 PF00542 Ribosomal protein L7/L12 C-terminal domain C3F34_05325 PF00466 Ribosomal protein L10 C3F34_05330 PF00687 Ribosomal protein L1p/L10e family C3F34_05335 PF03946 Ribosomal protein L11, N-terminal domain C3F34_05335 PF00298 Ribosomal protein L11, RNA binding domain C3F34_05340 PF02357 Transcription termination factor nusG C3F34_05340 PF00467 KOW motif C3F34_05345 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C3F34_05355 PF00009 Elongation factor Tu GTP binding domain C3F34_05355 PF03144 Elongation factor Tu domain 2 C3F34_05355 PF03143 Elongation factor Tu C-terminal domain C3F34_05380 PF00425 chorismate binding enzyme C3F34_05380 PF04715 Anthranilate synthase component I, N terminal region C3F34_05385 PF13419 Haloacid dehalogenase-like hydrolase C3F34_05390 PF00498 FHA domain C3F34_05390 PF12401 Protein of unknown function (DUF2662) C3F34_05395 PF03958 Bacterial type II/III secretion system short domain C3F34_05395 PF00263 Bacterial type II and III secretion system protein C3F34_05410 PF00816 H-NS histone family C3F34_05415 PF03061 Thioesterase superfamily C3F34_05435 PF03900 Porphobilinogen deaminase, C-terminal domain C3F34_05435 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C3F34_05440 PF04397 LytTr DNA-binding domain C3F34_05440 PF00072 Response regulator receiver domain C3F34_05445 PF06580 Histidine kinase C3F34_05445 PF07694 5TMR of 5TMR-LYT C3F34_05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_05450 PF14698 Argininosuccinate lyase C-terminal C3F34_05450 PF00206 Lyase C3F34_05455 PF04362 Bacterial Fe(2+) trafficking C3F34_05460 PF01895 PhoU domain C3F34_05465 PF02321 Outer membrane efflux protein C3F34_05475 PF01964 Radical SAM ThiC family C3F34_05475 PF13667 ThiC-associated domain C3F34_05480 PF00293 NUDIX domain C3F34_05490 PF01258 Prokaryotic dksA/traR C4-type zinc finger C3F34_05495 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F34_05500 PF01098 Cell cycle protein C3F34_05505 PF08245 Mur ligase middle domain C3F34_05505 PF02875 Mur ligase family, glutamate ligase domain C3F34_05515 PF02421 Ferrous iron transport protein B C3F34_05515 PF07670 Nucleoside recognition C3F34_05515 PF07664 Ferrous iron transport protein B C terminus C3F34_05525 PF02899 Phage integrase, N-terminal SAM-like domain C3F34_05525 PF00589 Phage integrase family C3F34_05530 PF10411 Disulfide bond isomerase protein N-terminus C3F34_05530 PF13098 Thioredoxin-like domain C3F34_05535 PF03447 Homoserine dehydrogenase, NAD binding domain C3F34_05535 PF01842 ACT domain C3F34_05535 PF00742 Homoserine dehydrogenase C3F34_05540 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_05555 PF00768 D-alanyl-D-alanine carboxypeptidase C3F34_05560 PF00196 Bacterial regulatory proteins, luxR family C3F34_05560 PF00072 Response regulator receiver domain C3F34_05565 PF00512 His Kinase A (phospho-acceptor) domain C3F34_05565 PF00989 PAS fold C3F34_05565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_05570 PF02954 Bacterial regulatory protein, Fis family C3F34_05570 PF00158 Sigma-54 interaction domain C3F34_05570 PF00072 Response regulator receiver domain C3F34_05575 PF03572 Peptidase family S41 C3F34_05575 PF01471 Putative peptidoglycan binding domain C3F34_05575 PF17820 PDZ domain C3F34_05580 PF01676 Metalloenzyme superfamily C3F34_05580 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C3F34_05585 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F34_05590 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F34_05595 PF00883 Cytosol aminopeptidase family, catalytic domain C3F34_05595 PF02789 Cytosol aminopeptidase family, N-terminal domain C3F34_05615 PF09335 SNARE associated Golgi protein C3F34_05620 PF00677 Lumazine binding domain C3F34_05630 PF01872 RibD C-terminal domain C3F34_05630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3F34_05635 PF03477 ATP cone domain C3F34_05640 PF00909 Ammonium Transporter Family C3F34_05645 PF00543 Nitrogen regulatory protein P-II C3F34_05655 PF01078 Magnesium chelatase, subunit ChlI C3F34_05655 PF13335 Magnesium chelatase, subunit ChlI C-terminal C3F34_05665 PF03573 outer membrane porin, OprD family C3F34_05670 PF00719 Inorganic pyrophosphatase C3F34_05685 PF13193 AMP-binding enzyme C-terminal domain C3F34_05685 PF00501 AMP-binding enzyme C3F34_05690 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F34_05690 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F34_05695 PF07690 Major Facilitator Superfamily C3F34_05700 PF03458 UPF0126 domain C3F34_05705 PF02810 SEC-C motif C3F34_05710 PF00571 CBS domain C3F34_05710 PF03471 Transporter associated domain C3F34_05710 PF03741 Integral membrane protein TerC family C3F34_05715 PF03641 Possible lysine decarboxylase C3F34_05725 PF07690 Major Facilitator Superfamily C3F34_05730 PF01183 Glycosyl hydrolases family 25 C3F34_05735 PF11799 impB/mucB/samB family C-terminal domain C3F34_05735 PF00817 impB/mucB/samB family C3F34_05735 PF11798 IMS family HHH motif C3F34_05750 PF08497 Radical SAM N-terminal C3F34_05750 PF11842 Domain of unknown function (DUF3362) C3F34_05750 PF04055 Radical SAM superfamily C3F34_05755 PF07690 Major Facilitator Superfamily C3F34_05805 PF01327 Polypeptide deformylase C3F34_05810 PF01476 LysM domain C3F34_05815 PF17782 DprA winged helix domain C3F34_05815 PF02481 DNA recombination-mediator protein A C3F34_05820 PF01300 Telomere recombination C3F34_05825 PF00892 EamA-like transporter family C3F34_05835 PF00255 Glutathione peroxidase C3F34_05850 PF00107 Zinc-binding dehydrogenase C3F34_05850 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_05860 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C3F34_05865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F34_05865 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F34_05870 PF00231 ATP synthase C3F34_05875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F34_05875 PF00306 ATP synthase alpha/beta chain, C terminal domain C3F34_05875 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F34_05880 PF00213 ATP synthase delta (OSCP) subunit C3F34_05885 PF00430 ATP synthase B/B' CF(0) C3F34_05890 PF00137 ATP synthase subunit C C3F34_05895 PF00119 ATP synthase A chain C3F34_05915 PF00005 ABC transporter C3F34_05920 PF00950 ABC 3 transport family C3F34_05925 PF01810 LysE type translocator C3F34_05930 PF04261 Dyp-type peroxidase family C3F34_05960 PF04717 Type VI secretion system, phage-baseplate injector C3F34_05960 PF16671 Actin cross-linking domain C3F34_05965 PF03949 Malic enzyme, NAD binding domain C3F34_05965 PF00390 Malic enzyme, N-terminal domain C3F34_05975 PF00750 tRNA synthetases class I (R) C3F34_05975 PF03485 Arginyl tRNA synthetase N terminal domain C3F34_05975 PF05746 DALR anticodon binding domain C3F34_05995 PF05726 Pirin C-terminal cupin domain C3F34_05995 PF02678 Pirin C3F34_06000 PF00072 Response regulator receiver domain C3F34_06000 PF00990 Diguanylate cyclase, GGDEF domain C3F34_06020 PF02540 NAD synthase C3F34_06020 PF00117 Glutamine amidotransferase class-I C3F34_06020 PF00958 GMP synthase C terminal domain C3F34_06025 PF07681 DoxX C3F34_06030 PF09335 SNARE associated Golgi protein C3F34_06045 PF13614 AAA domain C3F34_06055 PF01722 BolA-like protein C3F34_06090 PF07120 Protein of unknown function (DUF1376) C3F34_06105 PF13359 DDE superfamily endonuclease C3F34_06105 PF13613 Helix-turn-helix of DDE superfamily endonuclease C3F34_06120 PF02690 Na+/Pi-cotransporter C3F34_06130 PF00005 ABC transporter C3F34_06135 PF13533 Biotin-lipoyl like C3F34_06140 PF02321 Outer membrane efflux protein C3F34_06170 PF03976 Polyphosphate kinase 2 (PPK2) C3F34_06225 PF01168 Alanine racemase, N-terminal domain C3F34_06225 PF00842 Alanine racemase, C-terminal domain C3F34_06230 PF00324 Amino acid permease C3F34_06235 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C3F34_06240 PF04996 Succinylarginine dihydrolase C3F34_06245 PF00171 Aldehyde dehydrogenase family C3F34_06250 PF04958 Arginine N-succinyltransferase beta subunit C3F34_06255 PF00202 Aminotransferase class-III C3F34_06260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3F34_06260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3F34_06270 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F34_06270 PF00925 GTP cyclohydrolase II C3F34_06275 PF00885 6,7-dimethyl-8-ribityllumazine synthase C3F34_06280 PF01029 NusB family C3F34_06285 PF00586 AIR synthase related protein, N-terminal domain C3F34_06285 PF02769 AIR synthase related protein, C-terminal domain C3F34_06290 PF04608 Phosphatidylglycerophosphatase A C3F34_06295 PF14602 Hexapeptide repeat of succinyl-transferase C3F34_06295 PF12804 MobA-like NTP transferase domain C3F34_06295 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_06300 PF01380 SIS domain C3F34_06305 PF08722 TnsA endonuclease N terminal C3F34_06305 PF08721 TnsA endonuclease C terminal C3F34_06310 PF00665 Integrase core domain C3F34_06315 PF11426 Tn7 transposition regulator TnsC C3F34_06315 PF13401 AAA domain C3F34_06320 PF06527 TniQ C3F34_06320 PF15978 Tn7-like transposition protein D C3F34_06330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F34_06330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F34_06330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F34_06330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F34_06335 PF16363 GDP-mannose 4,6 dehydratase C3F34_06340 PF00342 Phosphoglucose isomerase C3F34_06345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3F34_06345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3F34_06345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3F34_06350 PF00483 Nucleotidyl transferase C3F34_06355 PF02397 Bacterial sugar transferase C3F34_06360 PF00535 Glycosyl transferase family 2 C3F34_06365 PF00534 Glycosyl transferases group 1 C3F34_06375 PF07922 Glycosyltransferase family 52 C3F34_06380 PF01943 Polysaccharide biosynthesis protein C3F34_06385 PF08666 SAF domain C3F34_06385 PF03102 NeuB family C3F34_06400 PF02348 Cytidylyltransferase C3F34_06405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F34_06410 PF02719 Polysaccharide biosynthesis protein C3F34_06415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3F34_06415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3F34_06415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3F34_06420 PF02563 Polysaccharide biosynthesis/export protein C3F34_06420 PF10531 SLBB domain C3F34_06425 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3F34_06430 PF13807 G-rich domain on putative tyrosine kinase C3F34_06430 PF02706 Chain length determinant protein C3F34_06430 PF13614 AAA domain C3F34_06435 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F34_06435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_06440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_06440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F34_06445 PF03023 Lipid II flippase MurJ C3F34_06450 PF01510 N-acetylmuramoyl-L-alanine amidase C3F34_06455 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C3F34_06455 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C3F34_06465 PF01138 3' exoribonuclease family, domain 1 C3F34_06465 PF03725 3' exoribonuclease family, domain 2 C3F34_06475 PF01323 DSBA-like thioredoxin domain C3F34_06485 PF13419 Haloacid dehalogenase-like hydrolase C3F34_06490 PF00106 short chain dehydrogenase C3F34_06505 PF00696 Amino acid kinase family C3F34_06505 PF00583 Acetyltransferase (GNAT) family C3F34_06510 PF09084 NMT1/THI5 like C3F34_06515 PF09084 NMT1/THI5 like C3F34_06520 PF00296 Luciferase-like monooxygenase C3F34_06525 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_06530 PF00005 ABC transporter C3F34_06535 PF08362 YcdC-like protein, C-terminal region C3F34_06535 PF00440 Bacterial regulatory proteins, tetR family C3F34_06540 PF01048 Phosphorylase superfamily C3F34_06560 PF06574 FAD synthetase C3F34_06560 PF01687 Riboflavin kinase C3F34_06565 PF08264 Anticodon-binding domain of tRNA C3F34_06565 PF00133 tRNA synthetases class I (I, L, M and V) C3F34_06565 PF06827 Zinc finger found in FPG and IleRS C3F34_06570 PF01252 Signal peptidase (SPase) II C3F34_06575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_06595 PF00920 Dehydratase family C3F34_06600 PF00920 Dehydratase family C3F34_06605 PF00551 Formyl transferase C3F34_06605 PF02911 Formyl transferase, C-terminal domain C3F34_06610 PF01189 16S rRNA methyltransferase RsmB/F C3F34_06610 PF01029 NusB family C3F34_06615 PF02535 ZIP Zinc transporter C3F34_06625 PF00209 Sodium:neurotransmitter symporter family C3F34_06680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F34_06685 PF07859 alpha/beta hydrolase fold C3F34_06700 PF03466 LysR substrate binding domain C3F34_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_06705 PF01025 GrpE C3F34_06710 PF00012 Hsp70 protein C3F34_06725 PF13406 Transglycosylase SLT domain C3F34_06730 PF02222 ATP-grasp domain C3F34_06730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C3F34_06735 PF00731 AIR carboxylase C3F34_06745 PF08245 Mur ligase middle domain C3F34_06745 PF02875 Mur ligase family, glutamate ligase domain C3F34_06745 PF01225 Mur ligase family, catalytic domain C3F34_06760 PF03741 Integral membrane protein TerC family C3F34_06765 PF01979 Amidohydrolase family C3F34_06770 PF00156 Phosphoribosyl transferase domain C3F34_06780 PF10411 Disulfide bond isomerase protein N-terminus C3F34_06780 PF13098 Thioredoxin-like domain C3F34_06785 PF16916 Dimerisation domain of Zinc Transporter C3F34_06785 PF01545 Cation efflux family C3F34_06790 PF02583 Metal-sensitive transcriptional repressor C3F34_06800 PF08241 Methyltransferase domain C3F34_06805 PF01926 50S ribosome-binding GTPase C3F34_06805 PF12631 MnmE helical domain C3F34_06805 PF10396 GTP-binding protein TrmE N-terminus C3F34_06810 PF14849 YidC periplasmic domain C3F34_06810 PF02096 60Kd inner membrane protein C3F34_06815 PF01809 Putative membrane protein insertion efficiency factor C3F34_06820 PF00825 Ribonuclease P C3F34_06825 PF00468 Ribosomal protein L34 C3F34_06830 PF11638 DnaA N-terminal domain C3F34_06830 PF08299 Bacterial dnaA protein helix-turn-helix C3F34_06830 PF00308 Bacterial dnaA protein C3F34_06835 PF02767 DNA polymerase III beta subunit, central domain C3F34_06835 PF02768 DNA polymerase III beta subunit, C-terminal domain C3F34_06835 PF00712 DNA polymerase III beta subunit, N-terminal domain C3F34_06840 PF02463 RecF/RecN/SMC N terminal domain C3F34_06845 PF18053 DNA gyrase B subunit insert domain C3F34_06845 PF00986 DNA gyrase B subunit, carboxyl terminus C3F34_06845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_06845 PF00204 DNA gyrase B C3F34_06845 PF01751 Toprim domain C3F34_06855 PF00579 tRNA synthetases class I (W and Y) C3F34_06860 PF03702 Anhydro-N-acetylmuramic acid kinase C3F34_06865 PF01521 Iron-sulphur cluster biosynthesis C3F34_06885 PF12848 ABC transporter C3F34_06885 PF00005 ABC transporter C3F34_06915 PF07690 Major Facilitator Superfamily C3F34_06920 PF07995 Glucose / Sorbosone dehydrogenase C3F34_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_06930 PF03466 LysR substrate binding domain C3F34_06935 PF00860 Permease family C3F34_06940 PF00311 Phosphoenolpyruvate carboxylase C3F34_06945 PF00440 Bacterial regulatory proteins, tetR family C3F34_06945 PF08361 MAATS-type transcriptional repressor, C-terminal region C3F34_06950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_06955 PF00873 AcrB/AcrD/AcrF family C3F34_06965 PF01556 DnaJ C terminal domain C3F34_06965 PF00226 DnaJ domain C3F34_06965 PF00684 DnaJ central domain C3F34_06975 PF05173 Dihydrodipicolinate reductase, C-terminus C3F34_06975 PF01113 Dihydrodipicolinate reductase, N-terminus C3F34_06985 PF07690 Major Facilitator Superfamily C3F34_06990 PF00248 Aldo/keto reductase family C3F34_06995 PF03466 LysR substrate binding domain C3F34_06995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_07005 PF00392 Bacterial regulatory proteins, gntR family C3F34_07005 PF00155 Aminotransferase class I and II C3F34_07010 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_07010 PF00107 Zinc-binding dehydrogenase C3F34_07015 PF03352 Methyladenine glycosylase C3F34_07030 PF00633 Helix-hairpin-helix motif C3F34_07030 PF14815 NUDIX domain C3F34_07030 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F34_07030 PF10576 Iron-sulfur binding domain of endonuclease III C3F34_07045 PF07043 Protein of unknown function (DUF1328) C3F34_07050 PF03692 Putative zinc- or iron-chelating domain C3F34_07055 PF00756 Putative esterase C3F34_07060 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_07060 PF16193 AAA C-terminal domain C3F34_07060 PF12002 MgsA AAA+ ATPase C terminal C3F34_07065 PF00005 ABC transporter C3F34_07070 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_07075 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_07080 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F34_07085 PF01810 LysE type translocator C3F34_07090 PF01037 Lrp/AsnC ligand binding domain C3F34_07095 PF01259 SAICAR synthetase C3F34_07105 PF00701 Dihydrodipicolinate synthetase family C3F34_07115 PF00857 Isochorismatase family C3F34_07120 PF01758 Sodium Bile acid symporter family C3F34_07125 PF13089 Polyphosphate kinase N-terminal domain C3F34_07125 PF17941 Polyphosphate kinase C-terminal domain 1 C3F34_07125 PF13090 Polyphosphate kinase C-terminal domain 2 C3F34_07125 PF02503 Polyphosphate kinase middle domain C3F34_07150 PF02580 D-Tyr-tRNA(Tyr) deacylase C3F34_07165 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C3F34_07165 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C3F34_07170 PF00581 Rhodanese-like domain C3F34_07175 PF02666 Phosphatidylserine decarboxylase C3F34_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_07180 PF00989 PAS fold C3F34_07180 PF00512 His Kinase A (phospho-acceptor) domain C3F34_07180 PF11808 Phosphate regulon sensor protein PhoR C3F34_07185 PF00486 Transcriptional regulatory protein, C terminal C3F34_07185 PF00072 Response regulator receiver domain C3F34_07195 PF00106 short chain dehydrogenase C3F34_07200 PF01554 MatE C3F34_07205 PF00155 Aminotransferase class I and II C3F34_07210 PF04286 Protein of unknown function (DUF445) C3F34_07225 PF04262 Glutamate-cysteine ligase C3F34_07230 PF02600 Disulfide bond formation protein DsbB C3F34_07240 PF05728 Uncharacterised protein family (UPF0227) C3F34_07245 PF01751 Toprim domain C3F34_07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_07245 PF00986 DNA gyrase B subunit, carboxyl terminus C3F34_07245 PF00204 DNA gyrase B C3F34_07260 PF02653 Branched-chain amino acid transport system / permease component C3F34_07270 PF00005 ABC transporter C3F34_07270 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F34_07275 PF00005 ABC transporter C3F34_07310 PF02683 Cytochrome C biogenesis protein transmembrane region C3F34_07310 PF11412 Disulphide bond corrector protein DsbC C3F34_07320 PF00990 Diguanylate cyclase, GGDEF domain C3F34_07320 PF07694 5TMR of 5TMR-LYT C3F34_07325 PF02525 Flavodoxin-like fold C3F34_07330 PF07859 alpha/beta hydrolase fold C3F34_07345 PF03372 Endonuclease/Exonuclease/phosphatase family C3F34_07350 PF00156 Phosphoribosyl transferase domain C3F34_07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_07355 PF03466 LysR substrate binding domain C3F34_07360 PF00857 Isochorismatase family C3F34_07380 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C3F34_07380 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C3F34_07385 PF04101 Glycosyltransferase family 28 C-terminal domain C3F34_07385 PF03033 Glycosyltransferase family 28 N-terminal domain C3F34_07390 PF01225 Mur ligase family, catalytic domain C3F34_07390 PF02875 Mur ligase family, glutamate ligase domain C3F34_07390 PF08245 Mur ligase middle domain C3F34_07395 PF01820 D-ala D-ala ligase N-terminus C3F34_07395 PF07478 D-ala D-ala ligase C-terminus C3F34_07400 PF08478 POTRA domain, FtsQ-type C3F34_07400 PF03799 Cell division protein FtsQ C3F34_07405 PF02491 SHS2 domain inserted in FTSA C3F34_07410 PF12327 FtsZ family, C-terminal domain C3F34_07410 PF00091 Tubulin/FtsZ family, GTPase domain C3F34_07415 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C3F34_07430 PF17831 Pyruvate dehydrogenase E1 component middle domain C3F34_07430 PF00456 Transketolase, thiamine diphosphate binding domain C3F34_07435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F34_07435 PF00364 Biotin-requiring enzyme C3F34_07435 PF02817 e3 binding domain C3F34_07445 PF01169 Uncharacterized protein family UPF0016 C3F34_07450 PF00258 Flavodoxin C3F34_07450 PF01613 Flavin reductase like domain C3F34_07455 PF00571 CBS domain C3F34_07455 PF00478 IMP dehydrogenase / GMP reductase domain C3F34_07460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F34_07460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F34_07460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F34_07460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F34_07465 PF01243 Pyridoxamine 5'-phosphate oxidase C3F34_07465 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C3F34_07470 PF02272 DHHA1 domain C3F34_07470 PF17768 RecJ OB domain C3F34_07470 PF01368 DHH family C3F34_07495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_07500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C3F34_07505 PF04452 RNA methyltransferase C3F34_07510 PF00924 Mechanosensitive ion channel C3F34_07510 PF05552 Conserved TM helix C3F34_07520 PF16177 Acetyl-coenzyme A synthetase N-terminus C3F34_07520 PF00501 AMP-binding enzyme C3F34_07520 PF13193 AMP-binding enzyme C-terminal domain C3F34_07530 PF00296 Luciferase-like monooxygenase C3F34_07535 PF03358 NADPH-dependent FMN reductase C3F34_07540 PF00196 Bacterial regulatory proteins, luxR family C3F34_07540 PF00072 Response regulator receiver domain C3F34_07550 PF00672 HAMP domain C3F34_07550 PF00072 Response regulator receiver domain C3F34_07550 PF01627 Hpt domain C3F34_07550 PF00512 His Kinase A (phospho-acceptor) domain C3F34_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_07555 PF04341 Protein of unknown function, DUF485 C3F34_07560 PF00474 Sodium:solute symporter family C3F34_07570 PF02028 BCCT, betaine/carnitine/choline family transporter C3F34_07585 PF00905 Penicillin binding protein transpeptidase domain C3F34_07600 PF00990 Diguanylate cyclase, GGDEF domain C3F34_07600 PF08448 PAS fold C3F34_07635 PF00005 ABC transporter C3F34_07635 PF17755 UvrA DNA-binding domain C3F34_07635 PF17760 UvrA interaction domain C3F34_07640 PF00440 Bacterial regulatory proteins, tetR family C3F34_07640 PF16925 Tetracyclin repressor-like, C-terminal domain C3F34_07645 PF00107 Zinc-binding dehydrogenase C3F34_07645 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_07655 PF06942 GlpM protein C3F34_07660 PF00106 short chain dehydrogenase C3F34_07665 PF09278 MerR, DNA binding C3F34_07665 PF00376 MerR family regulatory protein C3F34_07670 PF02581 Thiamine monophosphate synthase C3F34_07670 PF03070 TENA/THI-4/PQQC family C3F34_07670 PF08543 Phosphomethylpyrimidine kinase C3F34_07680 PF07690 Major Facilitator Superfamily C3F34_07685 PF00436 Single-strand binding protein family C3F34_07690 PF00324 Amino acid permease C3F34_07695 PF00155 Aminotransferase class I and II C3F34_07695 PF00392 Bacterial regulatory proteins, gntR family C3F34_07700 PF00202 Aminotransferase class-III C3F34_07705 PF00171 Aldehyde dehydrogenase family C3F34_07710 PF00578 AhpC/TSA family C3F34_07710 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F34_07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_07715 PF03466 LysR substrate binding domain C3F34_07720 PF00857 Isochorismatase family C3F34_07725 PF05726 Pirin C-terminal cupin domain C3F34_07725 PF02678 Pirin C3F34_07750 PF07690 Major Facilitator Superfamily C3F34_07755 PF03466 LysR substrate binding domain C3F34_07755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_07770 PF00171 Aldehyde dehydrogenase family C3F34_07775 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F34_07775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F34_07780 PF13193 AMP-binding enzyme C-terminal domain C3F34_07780 PF00501 AMP-binding enzyme C3F34_07785 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_07785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_07785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_07790 PF00378 Enoyl-CoA hydratase/isomerase C3F34_07815 PF00271 Helicase conserved C-terminal domain C3F34_07815 PF00176 SNF2 family N-terminal domain C3F34_07840 PF01555 DNA methylase C3F34_07870 PF00589 Phage integrase family C3F34_07870 PF13356 Arm DNA-binding domain C3F34_07880 PF02705 K+ potassium transporter C3F34_07900 PF00230 Major intrinsic protein C3F34_07915 PF00977 Histidine biosynthesis protein C3F34_07920 PF01636 Phosphotransferase enzyme family C3F34_07940 PF00324 Amino acid permease C3F34_07945 PF01266 FAD dependent oxidoreductase C3F34_07955 PF01381 Helix-turn-helix C3F34_07960 PF00977 Histidine biosynthesis protein C3F34_07965 PF00570 HRDC domain C3F34_07965 PF01612 3'-5' exonuclease C3F34_07970 PF00117 Glutamine amidotransferase class-I C3F34_07975 PF00475 Imidazoleglycerol-phosphate dehydratase C3F34_08005 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C3F34_08005 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C3F34_08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_08010 PF00672 HAMP domain C3F34_08010 PF00512 His Kinase A (phospho-acceptor) domain C3F34_08015 PF00486 Transcriptional regulatory protein, C terminal C3F34_08015 PF00072 Response regulator receiver domain C3F34_08020 PF09371 Tex-like protein N-terminal domain C3F34_08020 PF16921 Tex protein YqgF-like domain C3F34_08020 PF00575 S1 RNA binding domain C3F34_08020 PF17674 HHH domain C3F34_08030 PF00106 short chain dehydrogenase C3F34_08035 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F34_08040 PF12848 ABC transporter C3F34_08040 PF00005 ABC transporter C3F34_08060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_08065 PF00873 AcrB/AcrD/AcrF family C3F34_08075 PF01545 Cation efflux family C3F34_08095 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F34_08110 PF01795 MraW methylase family C3F34_08120 PF03717 Penicillin-binding Protein dimerisation domain C3F34_08120 PF00905 Penicillin binding protein transpeptidase domain C3F34_08125 PF08245 Mur ligase middle domain C3F34_08125 PF02875 Mur ligase family, glutamate ligase domain C3F34_08125 PF01225 Mur ligase family, catalytic domain C3F34_08130 PF01225 Mur ligase family, catalytic domain C3F34_08130 PF02875 Mur ligase family, glutamate ligase domain C3F34_08130 PF08245 Mur ligase middle domain C3F34_08135 PF00953 Glycosyl transferase family 4 C3F34_08140 PF13847 Methyltransferase domain C3F34_08145 PF00905 Penicillin binding protein transpeptidase domain C3F34_08145 PF00912 Transglycosylase C3F34_08145 PF17092 Penicillin-binding protein OB-like domain C3F34_08170 PF11741 AMIN domain C3F34_08170 PF00263 Bacterial type II and III secretion system protein C3F34_08170 PF03958 Bacterial type II/III secretion system short domain C3F34_08170 PF07660 Secretin and TonB N terminus short domain C3F34_08175 PF01202 Shikimate kinase C3F34_08180 PF01761 3-dehydroquinate synthase C3F34_08190 PF00310 Glutamine amidotransferases class-II C3F34_08190 PF04898 Glutamate synthase central domain C3F34_08190 PF01645 Conserved region in glutamate synthase C3F34_08190 PF01493 GXGXG motif C3F34_08195 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_08195 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3F34_08205 PF04011 LemA family C3F34_08210 PF04536 TPM domain C3F34_08220 PF07963 Prokaryotic N-terminal methylation motif C3F34_08220 PF00114 Pilin (bacterial filament) C3F34_08225 PF00114 Pilin (bacterial filament) C3F34_08225 PF07963 Prokaryotic N-terminal methylation motif C3F34_08230 PF15864 Protein glycosylation ligase C3F34_08230 PF04932 O-Antigen ligase C3F34_08230 PF11846 Virulence factor membrane-bound polymerase, C-terminal C3F34_08235 PF04932 O-Antigen ligase C3F34_08235 PF15864 Protein glycosylation ligase C3F34_08235 PF11846 Virulence factor membrane-bound polymerase, C-terminal C3F34_08240 PF00210 Ferritin-like domain C3F34_08245 PF04324 BFD-like [2Fe-2S] binding domain C3F34_08250 PF01042 Endoribonuclease L-PSP C3F34_08255 PF04607 Region found in RelA / SpoT proteins C3F34_08255 PF13291 ACT domain C3F34_08255 PF02824 TGS domain C3F34_08260 PF01192 RNA polymerase Rpb6 C3F34_08265 PF00625 Guanylate kinase C3F34_08270 PF02401 LytB protein C3F34_08275 PF07963 Prokaryotic N-terminal methylation motif C3F34_08275 PF00114 Pilin (bacterial filament) C3F34_08300 PF07963 Prokaryotic N-terminal methylation motif C3F34_08300 PF00114 Pilin (bacterial filament) C3F34_08305 PF00114 Pilin (bacterial filament) C3F34_08305 PF07963 Prokaryotic N-terminal methylation motif C3F34_08310 PF00886 Ribosomal protein S16 C3F34_08315 PF05239 PRC-barrel domain C3F34_08315 PF01782 RimM N-terminal domain C3F34_08320 PF01746 tRNA (Guanine-1)-methyltransferase C3F34_08325 PF01245 Ribosomal protein L19 C3F34_08335 PF00561 alpha/beta hydrolase fold C3F34_08340 PF03280 Proteobacterial lipase chaperone protein C3F34_08345 PF09157 Pseudouridine synthase II TruB, C-terminal C3F34_08345 PF01509 TruB family pseudouridylate synthase (N terminal domain) C3F34_08345 PF16198 tRNA pseudouridylate synthase B C-terminal domain C3F34_08350 PF01925 Sulfite exporter TauE/SafE C3F34_08360 PF00892 EamA-like transporter family C3F34_08365 PF00892 EamA-like transporter family C3F34_08370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F34_08370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F34_08375 PF02913 FAD linked oxidases, C-terminal domain C3F34_08375 PF01565 FAD binding domain C3F34_08385 PF00072 Response regulator receiver domain C3F34_08385 PF00196 Bacterial regulatory proteins, luxR family C3F34_08395 PF07690 Major Facilitator Superfamily C3F34_08395 PF00083 Sugar (and other) transporter C3F34_08400 PF07690 Major Facilitator Superfamily C3F34_08405 PF12823 Domain of unknown function (DUF3817) C3F34_08410 PF12805 FUSC-like inner membrane protein yccS C3F34_08415 PF00080 Copper/zinc superoxide dismutase (SODC) C3F34_08420 PF01594 AI-2E family transporter C3F34_08425 PF13614 AAA domain C3F34_08435 PF08241 Methyltransferase domain C3F34_08450 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3F34_08455 PF01197 Ribosomal protein L31 C3F34_08460 PF03109 ABC1 family C3F34_08465 PF01554 MatE C3F34_08475 PF06969 HemN C-terminal domain C3F34_08475 PF04055 Radical SAM superfamily C3F34_08490 PF01965 DJ-1/PfpI family C3F34_08495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_08495 PF12806 Acetyl-CoA dehydrogenase C-terminal like C3F34_08495 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_08495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_08505 PF08501 Shikimate dehydrogenase substrate binding domain C3F34_08505 PF01488 Shikimate / quinate 5-dehydrogenase C3F34_08505 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C3F34_08520 PF06969 HemN C-terminal domain C3F34_08520 PF04055 Radical SAM superfamily C3F34_08525 PF00925 GTP cyclohydrolase II C3F34_08530 PF02780 Transketolase, C-terminal domain C3F34_08530 PF02779 Transketolase, pyrimidine binding domain C3F34_08530 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C3F34_08535 PF00459 Inositol monophosphatase family C3F34_08540 PF00270 DEAD/DEAH box helicase C3F34_08540 PF00271 Helicase conserved C-terminal domain C3F34_08545 PF00005 ABC transporter C3F34_08550 PF02405 Permease MlaE C3F34_08555 PF02470 MlaD protein C3F34_08570 PF01544 CorA-like Mg2+ transporter protein C3F34_08575 PF03641 Possible lysine decarboxylase C3F34_08585 PF00156 Phosphoribosyl transferase domain C3F34_08590 PF17191 RecG wedge domain C3F34_08590 PF00270 DEAD/DEAH box helicase C3F34_08590 PF00271 Helicase conserved C-terminal domain C3F34_08610 PF00561 alpha/beta hydrolase fold C3F34_08610 PF08386 TAP-like protein C3F34_08615 PF01553 Acyltransferase C3F34_08625 PF00375 Sodium:dicarboxylate symporter family C3F34_08640 PF01926 50S ribosome-binding GTPase C3F34_08645 PF02082 Transcriptional regulator C3F34_08650 PF00042 Globin C3F34_08650 PF00175 Oxidoreductase NAD-binding domain C3F34_08650 PF00970 Oxidoreductase FAD-binding domain C3F34_08655 PF05872 Bacterial protein of unknown function (DUF853) C3F34_08660 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F34_08665 PF00117 Glutamine amidotransferase class-I C3F34_08670 PF00338 Ribosomal protein S10p/S20e C3F34_08675 PF00297 Ribosomal protein L3 C3F34_08680 PF00573 Ribosomal protein L4/L1 family C3F34_08685 PF00276 Ribosomal protein L23 C3F34_08690 PF00181 Ribosomal Proteins L2, RNA binding domain C3F34_08690 PF03947 Ribosomal Proteins L2, C-terminal domain C3F34_08695 PF00203 Ribosomal protein S19 C3F34_08700 PF00237 Ribosomal protein L22p/L17e C3F34_08705 PF00189 Ribosomal protein S3, C-terminal domain C3F34_08705 PF07650 KH domain C3F34_08710 PF00252 Ribosomal protein L16p/L10e C3F34_08715 PF00831 Ribosomal L29 protein C3F34_08720 PF00366 Ribosomal protein S17 C3F34_08725 PF00238 Ribosomal protein L14p/L23e C3F34_08730 PF00467 KOW motif C3F34_08730 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C3F34_08735 PF00281 Ribosomal protein L5 C3F34_08735 PF00673 ribosomal L5P family C-terminus C3F34_08740 PF00253 Ribosomal protein S14p/S29e C3F34_08745 PF00410 Ribosomal protein S8 C3F34_08750 PF00347 Ribosomal protein L6 C3F34_08755 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C3F34_08760 PF00333 Ribosomal protein S5, N-terminal domain C3F34_08760 PF03719 Ribosomal protein S5, C-terminal domain C3F34_08765 PF00327 Ribosomal protein L30p/L7e C3F34_08770 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C3F34_08775 PF00344 SecY translocase C3F34_08780 PF00444 Ribosomal protein L36 C3F34_08785 PF00416 Ribosomal protein S13/S18 C3F34_08790 PF00411 Ribosomal protein S11 C3F34_08795 PF00163 Ribosomal protein S4/S9 N-terminal domain C3F34_08795 PF01479 S4 domain C3F34_08800 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C3F34_08800 PF01000 RNA polymerase Rpb3/RpoA insert domain C3F34_08800 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C3F34_08805 PF01196 Ribosomal protein L17 C3F34_08810 PF00743 Flavin-binding monooxygenase-like C3F34_08815 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_08815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_08815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_08820 PF03937 Flavinator of succinate dehydrogenase C3F34_08845 PF00892 EamA-like transporter family C3F34_08860 PF01432 Peptidase family M3 C3F34_08870 PF17876 Cold shock domain C3F34_08870 PF00575 S1 RNA binding domain C3F34_08870 PF00773 RNB domain C3F34_08870 PF08206 Ribonuclease B OB domain C3F34_08870 PF08461 Ribonuclease R winged-helix domain C3F34_08905 PF01557 Fumarylacetoacetate (FAA) hydrolase family C3F34_08935 PF03631 Virulence factor BrkB C3F34_08945 PF03358 NADPH-dependent FMN reductase C3F34_08955 PF17151 Periplasmic sensor domain C3F34_08955 PF00990 Diguanylate cyclase, GGDEF domain C3F34_08985 PF02130 Uncharacterized protein family UPF0054 C3F34_08990 PF02562 PhoH-like protein C3F34_08995 PF04055 Radical SAM superfamily C3F34_08995 PF01938 TRAM domain C3F34_08995 PF00919 Uncharacterized protein family UPF0004 C3F34_09000 PF01551 Peptidase family M23 C3F34_09000 PF10145 Phage-related minor tail protein C3F34_09000 PF01464 Transglycosylase SLT domain C3F34_09010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C3F34_09010 PF00056 lactate/malate dehydrogenase, NAD binding domain C3F34_09035 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C3F34_09040 PF01066 CDP-alcohol phosphatidyltransferase C3F34_09080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F34_09080 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_09080 PF00403 Heavy-metal-associated domain C3F34_09095 PF04273 Putative phosphatase (DUF442) C3F34_09095 PF00753 Metallo-beta-lactamase superfamily C3F34_09105 PF00085 Thioredoxin C3F34_09110 PF03061 Thioesterase superfamily C3F34_09120 PF04461 Protein of unknown function (DUF520) C3F34_09130 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C3F34_09130 PF01266 FAD dependent oxidoreductase C3F34_09140 PF03795 YCII-related domain C3F34_09145 PF04279 Intracellular septation protein A C3F34_09155 PF00043 Glutathione S-transferase, C-terminal domain C3F34_09155 PF02798 Glutathione S-transferase, N-terminal domain C3F34_09160 PF01062 Bestrophin, RFP-TM, chloride channel C3F34_09165 PF04002 RadC-like JAB domain C3F34_09170 PF02441 Flavoprotein C3F34_09170 PF04127 DNA / pantothenate metabolism flavoprotein C3F34_09175 PF07361 Cytochrome b562 C3F34_09180 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F34_09180 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3F34_09190 PF02556 Preprotein translocase subunit SecB C3F34_09195 PF00462 Glutaredoxin C3F34_09205 PF03193 RsgA GTPase C3F34_09210 PF00929 Exonuclease C3F34_09225 PF02321 Outer membrane efflux protein C3F34_09230 PF12704 MacB-like periplasmic core domain C3F34_09230 PF02687 FtsX-like permease family C3F34_09230 PF00005 ABC transporter C3F34_09235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_09250 PF09334 tRNA synthetases class I (M) C3F34_09250 PF13603 Leucyl-tRNA synthetase, Domain 2 C3F34_09250 PF00133 tRNA synthetases class I (I, L, M and V) C3F34_09250 PF08264 Anticodon-binding domain of tRNA C3F34_09260 PF00205 Thiamine pyrophosphate enzyme, central domain C3F34_09260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F34_09260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F34_09265 PF10369 Small subunit of acetolactate synthase C3F34_09270 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3F34_09270 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C3F34_09295 PF00534 Glycosyl transferases group 1 C3F34_09295 PF13439 Glycosyltransferase Family 4 C3F34_09300 PF01569 PAP2 superfamily C3F34_09305 PF04384 Iron-sulphur cluster assembly C3F34_09310 PF00334 Nucleoside diphosphate kinase C3F34_09315 PF04055 Radical SAM superfamily C3F34_09330 PF04551 GcpE protein C3F34_09335 PF03129 Anticodon binding domain C3F34_09335 PF13393 Histidyl-tRNA synthetase C3F34_09345 PF01011 PQQ enzyme repeat C3F34_09345 PF13360 PQQ-like domain C3F34_09350 PF01926 50S ribosome-binding GTPase C3F34_09350 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C3F34_09360 PF02355 Protein export membrane protein C3F34_09360 PF07549 SecD/SecF GG Motif C3F34_09365 PF13721 SecD export protein N-terminal TM region C3F34_09365 PF02355 Protein export membrane protein C3F34_09365 PF07549 SecD/SecF GG Motif C3F34_09370 PF02699 Preprotein translocase subunit C3F34_09375 PF01702 Queuine tRNA-ribosyltransferase C3F34_09385 PF04011 LemA family C3F34_09395 PF02547 Queuosine biosynthesis protein C3F34_09455 PF00155 Aminotransferase class I and II C3F34_09460 PF00324 Amino acid permease C3F34_09470 PF02798 Glutathione S-transferase, N-terminal domain C3F34_09470 PF14497 Glutathione S-transferase, C-terminal domain C3F34_09485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F34_09490 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C3F34_09495 PF01037 Lrp/AsnC ligand binding domain C3F34_09500 PF16658 Class II release factor RF3, C-terminal domain C3F34_09500 PF03144 Elongation factor Tu domain 2 C3F34_09500 PF00009 Elongation factor Tu GTP binding domain C3F34_09515 PF01026 TatD related DNase C3F34_09520 PF00694 Aconitase C-terminal domain C3F34_09520 PF00330 Aconitase family (aconitate hydratase) C3F34_09530 PF00899 ThiF family C3F34_09535 PF03466 LysR substrate binding domain C3F34_09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_09540 PF01207 Dihydrouridine synthase (Dus) C3F34_09550 PF13186 Iron-sulfur cluster-binding domain C3F34_09550 PF04055 Radical SAM superfamily C3F34_09555 PF00884 Sulfatase C3F34_09565 PF07690 Major Facilitator Superfamily C3F34_09575 PF09278 MerR, DNA binding C3F34_09575 PF00376 MerR family regulatory protein C3F34_09580 PF00892 EamA-like transporter family C3F34_09590 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3F34_09590 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3F34_09595 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C3F34_09600 PF02233 NAD(P) transhydrogenase beta subunit C3F34_09610 PF07715 TonB-dependent Receptor Plug Domain C3F34_09610 PF00593 TonB dependent receptor C3F34_09620 PF00909 Ammonium Transporter Family C3F34_09620 PF00672 HAMP domain C3F34_09635 PF01261 Xylose isomerase-like TIM barrel C3F34_09640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F34_09640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F34_09645 PF00378 Enoyl-CoA hydratase/isomerase C3F34_09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_09650 PF01627 Hpt domain C3F34_09650 PF00072 Response regulator receiver domain C3F34_09650 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C3F34_09650 PF00672 HAMP domain C3F34_09650 PF00512 His Kinase A (phospho-acceptor) domain C3F34_09655 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_09665 PF05958 tRNA (Uracil-5-)-methyltransferase C3F34_09670 PF04607 Region found in RelA / SpoT proteins C3F34_09670 PF02824 TGS domain C3F34_09670 PF13291 ACT domain C3F34_09675 PF03819 MazG nucleotide pyrophosphohydrolase domain C3F34_09685 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F34_09685 PF12626 Polymerase A arginine-rich C-terminus C3F34_09685 PF01743 Poly A polymerase head domain C3F34_09690 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3F34_09695 PF02548 Ketopantoate hydroxymethyltransferase C3F34_09700 PF02569 Pantoate-beta-alanine ligase C3F34_09705 PF03668 P-loop ATPase protein family C3F34_09710 PF00381 PTS HPr component phosphorylation site C3F34_09715 PF04751 Protein of unknown function (DUF615) C3F34_09720 PF13193 AMP-binding enzyme C-terminal domain C3F34_09720 PF00501 AMP-binding enzyme C3F34_09725 PF03129 Anticodon binding domain C3F34_09725 PF02824 TGS domain C3F34_09725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F34_09725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F34_09730 PF05198 Translation initiation factor IF-3, N-terminal domain C3F34_09730 PF00707 Translation initiation factor IF-3, C-terminal domain C3F34_09735 PF00043 Glutathione S-transferase, C-terminal domain C3F34_09735 PF02798 Glutathione S-transferase, N-terminal domain C3F34_09755 PF09335 SNARE associated Golgi protein C3F34_09770 PF01632 Ribosomal protein L35 C3F34_09775 PF00453 Ribosomal protein L20 C3F34_09790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C3F34_09790 PF01409 tRNA synthetases class II core domain (F) C3F34_09795 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C3F34_09795 PF01588 Putative tRNA binding domain C3F34_09795 PF03483 B3/4 domain C3F34_09795 PF03484 tRNA synthetase B5 domain C3F34_09795 PF03147 Ferredoxin-fold anticodon binding domain C3F34_09800 PF00216 Bacterial DNA-binding protein C3F34_09810 PF07497 Rho termination factor, RNA-binding domain C3F34_09810 PF07498 Rho termination factor, N-terminal domain C3F34_09810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F34_09815 PF00085 Thioredoxin C3F34_09820 PF02541 Ppx/GppA phosphatase family C3F34_09825 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C3F34_09830 PF01171 PP-loop family C3F34_09830 PF09179 TilS substrate binding domain C3F34_09830 PF11734 TilS substrate C-terminal domain C3F34_09835 PF03807 NADP oxidoreductase coenzyme F420-dependent C3F34_09835 PF14748 Pyrroline-5-carboxylate reductase dimerisation C3F34_09840 PF02325 YGGT family C3F34_09845 PF01367 5'-3' exonuclease, C-terminal SAM fold C3F34_09845 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3F34_09845 PF01612 3'-5' exonuclease C3F34_09845 PF00476 DNA polymerase family A C3F34_09865 PF00437 Type II/IV secretion system protein C3F34_09875 PF02566 OsmC-like protein C3F34_09880 PF00795 Carbon-nitrogen hydrolase C3F34_09925 PF00309 Sigma-54 factor, Activator interacting domain (AID) C3F34_09925 PF04963 Sigma-54 factor, core binding domain C3F34_09925 PF04552 Sigma-54, DNA binding domain C3F34_09930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C3F34_09935 PF01722 BolA-like protein C3F34_09940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F34_09945 PF01634 ATP phosphoribosyltransferase C3F34_09955 PF00815 Histidinol dehydrogenase C3F34_09960 PF00155 Aminotransferase class I and II C3F34_09965 PF04715 Anthranilate synthase component I, N terminal region C3F34_09965 PF00425 chorismate binding enzyme C3F34_10015 PF00293 NUDIX domain C3F34_10020 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_10025 PF00814 Glycoprotease family C3F34_10030 PF02673 Bacitracin resistance protein BacA C3F34_10035 PF04445 Putative SAM-dependent methyltransferase C3F34_10045 PF00756 Putative esterase C3F34_10055 PF00834 Ribulose-phosphate 3 epimerase family C3F34_10065 PF07732 Multicopper oxidase C3F34_10065 PF07731 Multicopper oxidase C3F34_10065 PF00394 Multicopper oxidase C3F34_10080 PF00893 Small Multidrug Resistance protein C3F34_10085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F34_10085 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3F34_10090 PF08378 Nuclease-related domain C3F34_10095 PF08543 Phosphomethylpyrimidine kinase C3F34_10095 PF03070 TENA/THI-4/PQQC family C3F34_10095 PF02581 Thiamine monophosphate synthase C3F34_10100 PF13419 Haloacid dehalogenase-like hydrolase C3F34_10110 PF01037 Lrp/AsnC ligand binding domain C3F34_10115 PF01266 FAD dependent oxidoreductase C3F34_10120 PF01168 Alanine racemase, N-terminal domain C3F34_10120 PF00842 Alanine racemase, C-terminal domain C3F34_10125 PF01042 Endoribonuclease L-PSP C3F34_10130 PF00324 Amino acid permease C3F34_10135 PF01757 Acyltransferase family C3F34_10145 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F34_10145 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F34_10155 PF00164 Ribosomal protein S12/S23 C3F34_10160 PF00177 Ribosomal protein S7p/S5e C3F34_10165 PF03764 Elongation factor G, domain IV C3F34_10165 PF00009 Elongation factor Tu GTP binding domain C3F34_10165 PF00679 Elongation factor G C-terminus C3F34_10165 PF03144 Elongation factor Tu domain 2 C3F34_10165 PF14492 Elongation Factor G, domain II C3F34_10170 PF03143 Elongation factor Tu C-terminal domain C3F34_10170 PF03144 Elongation factor Tu domain 2 C3F34_10170 PF00009 Elongation factor Tu GTP binding domain C3F34_10180 PF00583 Acetyltransferase (GNAT) family C3F34_10185 PF04377 Arginine-tRNA-protein transferase, C terminus C3F34_10185 PF04376 Arginine-tRNA-protein transferase, N terminus C3F34_10190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C3F34_10195 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_10200 PF09397 Ftsk gamma domain C3F34_10200 PF17854 FtsK alpha domain C3F34_10200 PF01580 FtsK/SpoIIIE family C3F34_10200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C3F34_10205 PF03466 LysR substrate binding domain C3F34_10205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_10220 PF03776 Septum formation topological specificity factor MinE C3F34_10225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3F34_10230 PF03775 Septum formation inhibitor MinC, C-terminal domain C3F34_10240 PF01553 Acyltransferase C3F34_10245 PF00691 OmpA family C3F34_10245 PF13488 Glycine zipper C3F34_10250 PF13361 UvrD-like helicase C-terminal domain C3F34_10250 PF00580 UvrD/REP helicase N-terminal domain C3F34_10255 PF00692 dUTPase C3F34_10260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F34_10260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F34_10260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F34_10260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F34_10265 PF00696 Amino acid kinase family C3F34_10275 PF13230 Glutamine amidotransferases class-II C3F34_10280 PF01814 Hemerythrin HHE cation binding domain C3F34_10290 PF03658 RnfH family Ubiquitin C3F34_10295 PF04355 SmpA / OmlA family C3F34_10300 PF01475 Ferric uptake regulator family C3F34_10310 PF00149 Calcineurin-like phosphoesterase C3F34_10310 PF12320 Type 5 capsule protein repressor C-terminal domain C3F34_10325 PF01370 NAD dependent epimerase/dehydratase family C3F34_10325 PF08338 Domain of unknown function (DUF1731) C3F34_10330 PF01266 FAD dependent oxidoreductase C3F34_10335 PF00490 Delta-aminolevulinic acid dehydratase C3F34_10340 PF03061 Thioesterase superfamily C3F34_10345 PF13533 Biotin-lipoyl like C3F34_10350 PF07690 Major Facilitator Superfamily C3F34_10355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3F34_10355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3F34_10365 PF00589 Phage integrase family C3F34_10365 PF13356 Arm DNA-binding domain C3F34_10375 PF00436 Single-strand binding protein family C3F34_10535 PF10122 Mu-like prophage protein Com C3F34_10595 PF00589 Phage integrase family C3F34_10595 PF13356 Arm DNA-binding domain C3F34_10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_10645 PF03466 LysR substrate binding domain C3F34_10650 PF02028 BCCT, betaine/carnitine/choline family transporter C3F34_10665 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_10665 PF18113 Rubredoxin binding C-terminal domain C3F34_10695 PF00892 EamA-like transporter family C3F34_10715 PF13784 Fic/DOC family N-terminal C3F34_10715 PF02661 Fic/DOC family C3F34_10760 PF00691 OmpA family C3F34_10760 PF01389 OmpA-like transmembrane domain C3F34_10780 PF02321 Outer membrane efflux protein C3F34_10785 PF00005 ABC transporter C3F34_10785 PF03412 Peptidase C39 family C3F34_10785 PF00664 ABC transporter transmembrane region C3F34_10790 PF13533 Biotin-lipoyl like C3F34_10810 PF06276 Ferric iron reductase FhuF-like transporter C3F34_10810 PF04183 IucA / IucC family C3F34_10815 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C3F34_10825 PF04183 IucA / IucC family C3F34_10825 PF06276 Ferric iron reductase FhuF-like transporter C3F34_10830 PF06276 Ferric iron reductase FhuF-like transporter C3F34_10830 PF04183 IucA / IucC family C3F34_10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_10905 PF00512 His Kinase A (phospho-acceptor) domain C3F34_10905 PF08521 Two-component sensor kinase N-terminal C3F34_10910 PF00486 Transcriptional regulatory protein, C terminal C3F34_10910 PF00072 Response regulator receiver domain C3F34_10935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C3F34_10940 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_10945 PF03466 LysR substrate binding domain C3F34_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_10960 PF09339 IclR helix-turn-helix domain C3F34_10960 PF01614 Bacterial transcriptional regulator C3F34_10965 PF01494 FAD binding domain C3F34_10985 PF07690 Major Facilitator Superfamily C3F34_10990 PF00171 Aldehyde dehydrogenase family C3F34_10990 PF01575 MaoC like domain C3F34_10995 PF05138 Phenylacetic acid catabolic protein C3F34_11000 PF06243 Phenylacetic acid degradation B C3F34_11005 PF05138 Phenylacetic acid catabolic protein C3F34_11010 PF01883 Iron-sulfur cluster assembly protein C3F34_11015 PF00175 Oxidoreductase NAD-binding domain C3F34_11015 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_11015 PF00970 Oxidoreductase FAD-binding domain C3F34_11020 PF00378 Enoyl-CoA hydratase/isomerase C3F34_11025 PF00378 Enoyl-CoA hydratase/isomerase C3F34_11030 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain C3F34_11030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F34_11030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F34_11035 PF00108 Thiolase, N-terminal domain C3F34_11035 PF02803 Thiolase, C-terminal domain C3F34_11040 PF14535 AMP-binding enzyme C-terminal domain C3F34_11040 PF00501 AMP-binding enzyme C3F34_11045 PF07848 PaaX-like protein C3F34_11045 PF08223 PaaX-like protein C-terminal domain C3F34_11050 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_11065 PF01588 Putative tRNA binding domain C3F34_11065 PF09334 tRNA synthetases class I (M) C3F34_11075 PF10609 NUBPL iron-transfer P-loop NTPase C3F34_11090 PF00692 dUTPase C3F34_11115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F34_11115 PF04073 Aminoacyl-tRNA editing domain C3F34_11115 PF03129 Anticodon binding domain C3F34_11120 PF00873 AcrB/AcrD/AcrF family C3F34_11125 PF13533 Biotin-lipoyl like C3F34_11135 PF00072 Response regulator receiver domain C3F34_11140 PF00072 Response regulator receiver domain C3F34_11145 PF01584 CheW-like domain C3F34_11150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F34_11150 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C3F34_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_11155 PF01627 Hpt domain C3F34_11155 PF01584 CheW-like domain C3F34_11155 PF00072 Response regulator receiver domain C3F34_11165 PF07687 Peptidase dimerisation domain C3F34_11165 PF01546 Peptidase family M20/M25/M40 C3F34_11180 PF04304 Protein of unknown function (DUF454) C3F34_11185 PF17969 L,D-transpeptidase C-terminal domain C3F34_11185 PF03734 L,D-transpeptidase catalytic domain C3F34_11240 PF00667 FAD binding domain C3F34_11240 PF00175 Oxidoreductase NAD-binding domain C3F34_11240 PF00258 Flavodoxin C3F34_11250 PF12805 FUSC-like inner membrane protein yccS C3F34_11255 PF07690 Major Facilitator Superfamily C3F34_11265 PF00999 Sodium/hydrogen exchanger family C3F34_11270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F34_11275 PF00582 Universal stress protein family C3F34_11280 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_11285 PF04072 Leucine carboxyl methyltransferase C3F34_11290 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F34_11290 PF03449 Transcription elongation factor, N-terminal C3F34_11295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C3F34_11295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F34_11295 PF02142 MGS-like domain C3F34_11300 PF00117 Glutamine amidotransferase class-I C3F34_11300 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C3F34_11315 PF01985 CRS1 / YhbY (CRM) domain C3F34_11320 PF01728 FtsJ-like methyltransferase C3F34_11325 PF01434 Peptidase family M41 C3F34_11325 PF06480 FtsH Extracellular C3F34_11325 PF17862 AAA+ lid domain C3F34_11325 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_11330 PF00809 Pterin binding enzyme C3F34_11350 PF16655 PhoD-like phosphatase, N-terminal domain C3F34_11350 PF09423 PhoD-like phosphatase C3F34_11370 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3F34_11370 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3F34_11385 PF00083 Sugar (and other) transporter C3F34_11390 PF01266 FAD dependent oxidoreductase C3F34_11390 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C3F34_11400 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C3F34_11400 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C3F34_11405 PF00781 Diacylglycerol kinase catalytic domain C3F34_11410 PF00149 Calcineurin-like phosphoesterase C3F34_11415 PF00166 Chaperonin 10 Kd subunit C3F34_11420 PF00118 TCP-1/cpn60 chaperonin family C3F34_11425 PF01219 Prokaryotic diacylglycerol kinase C3F34_11430 PF00873 AcrB/AcrD/AcrF family C3F34_11440 PF01435 Peptidase family M48 C3F34_11445 PF10145 Phage-related minor tail protein C3F34_11445 PF01551 Peptidase family M23 C3F34_11445 PF01464 Transglycosylase SLT domain C3F34_11450 PF01171 PP-loop family C3F34_11460 PF01464 Transglycosylase SLT domain C3F34_11460 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F34_11465 PF03449 Transcription elongation factor, N-terminal C3F34_11465 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F34_11495 PF00144 Beta-lactamase C3F34_11525 PF00719 Inorganic pyrophosphatase C3F34_11545 PF06865 Pyrimidine/purine nucleoside phosphorylase C3F34_11605 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB C3F34_11605 PF17287 POTRA domain C3F34_11605 PF08479 POTRA domain, ShlB-type C3F34_11610 PF13332 Hemagglutinin repeat C3F34_11610 PF04829 Pre-toxin domain with VENN motif C3F34_11610 PF13018 Extended Signal Peptide of Type V secretion system C3F34_11610 PF05860 haemagglutination activity domain C3F34_11645 PF00171 Aldehyde dehydrogenase family C3F34_11670 PF03695 Uncharacterised protein family (UPF0149) C3F34_11675 PF00557 Metallopeptidase family M24 C3F34_11675 PF05195 Aminopeptidase P, N-terminal domain C3F34_11680 PF01613 Flavin reductase like domain C3F34_11685 PF08267 Cobalamin-independent synthase, N-terminal domain C3F34_11685 PF01717 Cobalamin-independent synthase, Catalytic domain C3F34_11715 PF01494 FAD binding domain C3F34_11720 PF01494 FAD binding domain C3F34_11730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F34_11740 PF04972 BON domain C3F34_11745 PF00135 Carboxylesterase family C3F34_11750 PF09297 NADH pyrophosphatase zinc ribbon domain C3F34_11750 PF00293 NUDIX domain C3F34_11760 PF00929 Exonuclease C3F34_11765 PF01476 LysM domain C3F34_11765 PF01464 Transglycosylase SLT domain C3F34_11770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F34_11775 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_11780 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_11780 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F34_11785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F34_11785 PF00005 ABC transporter C3F34_11790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_11790 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_11795 PF02798 Glutathione S-transferase, N-terminal domain C3F34_11815 PF00324 Amino acid permease C3F34_11830 PF00929 Exonuclease C3F34_11835 PF01979 Amidohydrolase family C3F34_11840 PF00764 Arginosuccinate synthase C3F34_11845 PF02652 L-lactate permease C3F34_11850 PF00392 Bacterial regulatory proteins, gntR family C3F34_11850 PF07729 FCD domain C3F34_11855 PF01070 FMN-dependent dehydrogenase C3F34_11860 PF01565 FAD binding domain C3F34_11860 PF09330 D-lactate dehydrogenase, membrane binding C3F34_11865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_11865 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_11885 PF00440 Bacterial regulatory proteins, tetR family C3F34_11885 PF17932 Tetracyclin repressor-like, C-terminal domain C3F34_11900 PF14537 Cytochrome c3 C3F34_11900 PF00890 FAD binding domain C3F34_11905 PF03466 LysR substrate binding domain C3F34_11905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_11915 PF07690 Major Facilitator Superfamily C3F34_11925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_11925 PF03466 LysR substrate binding domain C3F34_11935 PF05962 HutD C3F34_11940 PF01327 Polypeptide deformylase C3F34_11950 PF07690 Major Facilitator Superfamily C3F34_11970 PF04480 Protein of unknown function (DUF559) C3F34_11980 PF02574 Homocysteine S-methyltransferase C3F34_11980 PF02310 B12 binding domain C3F34_11980 PF02607 B12 binding domain C3F34_11980 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3F34_11980 PF00809 Pterin binding enzyme C3F34_11985 PF01384 Phosphate transporter family C3F34_11995 PF00535 Glycosyl transferase family 2 C3F34_12000 PF01522 Polysaccharide deacetylase C3F34_12000 PF14883 Hypothetical glycosyl hydrolase family 13 C3F34_12010 PF03466 LysR substrate binding domain C3F34_12010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_12015 PF00561 alpha/beta hydrolase fold C3F34_12020 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_12020 PF18113 Rubredoxin binding C-terminal domain C3F34_12025 PF00301 Rubredoxin C3F34_12030 PF00156 Phosphoribosyl transferase domain C3F34_12045 PF00152 tRNA synthetases class II (D, K and N) C3F34_12045 PF01336 OB-fold nucleic acid binding domain C3F34_12050 PF14052 Capsule assembly protein Wzi C3F34_12055 PF02678 Pirin C3F34_12055 PF17954 Quercetinase C-terminal cupin domain C3F34_12065 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3F34_12070 PF05675 Protein of unknown function (DUF817) C3F34_12085 PF03960 ArsC family C3F34_12090 PF01022 Bacterial regulatory protein, arsR family C3F34_12095 PF01758 Sodium Bile acid symporter family C3F34_12100 PF03358 NADPH-dependent FMN reductase C3F34_12120 PF00218 Indole-3-glycerol phosphate synthase C3F34_12125 PF00591 Glycosyl transferase family, a/b domain C3F34_12125 PF02885 Glycosyl transferase family, helical bundle domain C3F34_12130 PF00117 Glutamine amidotransferase class-I C3F34_12145 PF02525 Flavodoxin-like fold C3F34_12160 PF01425 Amidase C3F34_12165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F34_12165 PF00364 Biotin-requiring enzyme C3F34_12165 PF00289 Biotin carboxylase, N-terminal domain C3F34_12165 PF02785 Biotin carboxylase C-terminal domain C3F34_12170 PF00392 Bacterial regulatory proteins, gntR family C3F34_12170 PF07729 FCD domain C3F34_12175 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3F34_12175 PF07683 Cobalamin synthesis protein cobW C-terminal domain C3F34_12180 PF07152 YaeQ protein C3F34_12185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F34_12200 PF00990 Diguanylate cyclase, GGDEF domain C3F34_12215 PF04973 Nicotinamide mononucleotide transporter C3F34_12240 PF01106 NifU-like domain C3F34_12240 PF01521 Iron-sulphur cluster biosynthesis C3F34_12245 PF00593 TonB dependent receptor C3F34_12245 PF07715 TonB-dependent Receptor Plug Domain C3F34_12255 PF00561 alpha/beta hydrolase fold C3F34_12260 PF00484 Carbonic anhydrase C3F34_12265 PF13472 GDSL-like Lipase/Acylhydrolase family C3F34_12270 PF00005 ABC transporter C3F34_12280 PF01694 Rhomboid family C3F34_12285 PF00912 Transglycosylase C3F34_12290 PF02503 Polyphosphate kinase middle domain C3F34_12290 PF13089 Polyphosphate kinase N-terminal domain C3F34_12290 PF13090 Polyphosphate kinase C-terminal domain 2 C3F34_12290 PF17941 Polyphosphate kinase C-terminal domain 1 C3F34_12325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F34_12325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F34_12330 PF01784 NIF3 (NGG1p interacting factor 3) C3F34_12335 PF13180 PDZ domain C3F34_12335 PF17820 PDZ domain C3F34_12340 PF00698 Acyl transferase domain C3F34_12340 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F34_12340 PF16197 Ketoacyl-synthetase C-terminal extension C3F34_12340 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F34_12340 PF08659 KR domain C3F34_12340 PF00550 Phosphopantetheine attachment site C3F34_12340 PF14765 Polyketide synthase dehydratase C3F34_12340 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_12350 PF03471 Transporter associated domain C3F34_12350 PF00571 CBS domain C3F34_12350 PF01595 Cyclin M transmembrane N-terminal domain C3F34_12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_12355 PF03466 LysR substrate binding domain C3F34_12360 PF00463 Isocitrate lyase family C3F34_12380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F34_12380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F34_12380 PF11890 Domain of unknown function (DUF3410) C3F34_12385 PF00152 tRNA synthetases class II (D, K and N) C3F34_12390 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F34_12390 PF01743 Poly A polymerase head domain C3F34_12395 PF01515 Phosphate acetyl/butaryl transferase C3F34_12395 PF00390 Malic enzyme, N-terminal domain C3F34_12395 PF03949 Malic enzyme, NAD binding domain C3F34_12400 PF00990 Diguanylate cyclase, GGDEF domain C3F34_12400 PF00563 EAL domain C3F34_12400 PF03707 Bacterial signalling protein N terminal repeat C3F34_12405 PF04452 RNA methyltransferase C3F34_12410 PF02219 Methylenetetrahydrofolate reductase C3F34_12415 PF05221 S-adenosyl-L-homocysteine hydrolase C3F34_12415 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C3F34_12455 PF01784 NIF3 (NGG1p interacting factor 3) C3F34_12460 PF00881 Nitroreductase family C3F34_12465 PF00378 Enoyl-CoA hydratase/isomerase C3F34_12470 PF00293 NUDIX domain C3F34_12470 PF01467 Cytidylyltransferase-like C3F34_12475 PF04264 YceI-like domain C3F34_12480 PF03466 LysR substrate binding domain C3F34_12480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_12485 PF01810 LysE type translocator C3F34_12490 PF00578 AhpC/TSA family C3F34_12505 PF06508 Queuosine biosynthesis protein QueC C3F34_12510 PF04055 Radical SAM superfamily C3F34_12515 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_12515 PF14602 Hexapeptide repeat of succinyl-transferase C3F34_12515 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C3F34_12530 PF03466 LysR substrate binding domain C3F34_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_12535 PF12857 TOBE-like domain C3F34_12535 PF00005 ABC transporter C3F34_12540 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_12545 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_12560 PF01063 Amino-transferase class IV C3F34_12565 PF02618 YceG-like family C3F34_12570 PF02223 Thymidylate kinase C3F34_12580 PF00890 FAD binding domain C3F34_12580 PF02910 Fumarate reductase flavoprotein C-term C3F34_12585 PF13180 PDZ domain C3F34_12595 PF00679 Elongation factor G C-terminus C3F34_12595 PF06421 GTP-binding protein LepA C-terminus C3F34_12595 PF03144 Elongation factor Tu domain 2 C3F34_12595 PF00009 Elongation factor Tu GTP binding domain C3F34_12600 PF10502 Signal peptidase, peptidase S26 C3F34_12610 PF00035 Double-stranded RNA binding motif C3F34_12610 PF14622 Ribonuclease-III-like C3F34_12615 PF01926 50S ribosome-binding GTPase C3F34_12615 PF07650 KH domain C3F34_12625 PF02565 Recombination protein O C terminal C3F34_12625 PF11967 Recombination protein O N terminal C3F34_12630 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C3F34_12635 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C3F34_12680 PF17155 Gammaproteobacterial periplasmic sensor domain C3F34_12680 PF00990 Diguanylate cyclase, GGDEF domain C3F34_12695 PF12344 Ultra-violet resistance protein B C3F34_12695 PF02151 UvrB/uvrC motif C3F34_12695 PF17757 UvrB interaction domain C3F34_12695 PF00271 Helicase conserved C-terminal domain C3F34_12695 PF04851 Type III restriction enzyme, res subunit C3F34_12710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F34_12710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F34_12725 PF01638 HxlR-like helix-turn-helix C3F34_12730 PF01018 GTP1/OBG C3F34_12730 PF01926 50S ribosome-binding GTPase C3F34_12735 PF00696 Amino acid kinase family C3F34_12735 PF01472 PUA domain C3F34_12740 PF01569 PAP2 superfamily C3F34_12745 PF00593 TonB dependent receptor C3F34_12745 PF07660 Secretin and TonB N terminus short domain C3F34_12745 PF07715 TonB-dependent Receptor Plug Domain C3F34_12755 PF00202 Aminotransferase class-III C3F34_12760 PF00282 Pyridoxal-dependent decarboxylase conserved domain C3F34_12765 PF01037 Lrp/AsnC ligand binding domain C3F34_12770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F34_12770 PF00205 Thiamine pyrophosphate enzyme, central domain C3F34_12770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F34_12775 PF00324 Amino acid permease C3F34_12780 PF12849 PBP superfamily domain C3F34_12785 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_12790 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_12795 PF00005 ABC transporter C3F34_12800 PF08496 Peptidase family S49 N-terminal C3F34_12800 PF01343 Peptidase family S49 C3F34_12810 PF00206 Lyase C3F34_12810 PF08328 Adenylosuccinate lyase C-terminal C3F34_12815 PF04356 Protein of unknown function (DUF489) C3F34_12825 PF00293 NUDIX domain C3F34_12835 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_12840 PF00768 D-alanyl-D-alanine carboxypeptidase C3F34_12840 PF07943 Penicillin-binding protein 5, C-terminal domain C3F34_12855 PF01975 Survival protein SurE C3F34_12860 PF01551 Peptidase family M23 C3F34_12860 PF01476 LysM domain C3F34_12865 PF03466 LysR substrate binding domain C3F34_12865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_12870 PF00202 Aminotransferase class-III C3F34_12875 PF00462 Glutaredoxin C3F34_12885 PF07759 Protein of unknown function (DUF1615) C3F34_12900 PF00550 Phosphopantetheine attachment site C3F34_12905 PF00550 Phosphopantetheine attachment site C3F34_12915 PF07977 FabA-like domain C3F34_12920 PF00795 Carbon-nitrogen hydrolase C3F34_12920 PF00535 Glycosyl transferase family 2 C3F34_12930 PF00221 Aromatic amino acid lyase C3F34_12950 PF04820 Tryptophan halogenase C3F34_12960 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F34_12960 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F34_12975 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F34_12975 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F34_12990 PF01207 Dihydrouridine synthase (Dus) C3F34_12995 PF03060 Nitronate monooxygenase C3F34_13030 PF13654 AAA domain C3F34_13030 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F34_13035 PF07690 Major Facilitator Superfamily C3F34_13040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F34_13045 PF13593 SBF-like CPA transporter family (DUF4137) C3F34_13050 PF01197 Ribosomal protein L31 C3F34_13065 PF04055 Radical SAM superfamily C3F34_13070 PF08207 Elongation factor P (EF-P) KOW-like domain C3F34_13070 PF09285 Elongation factor P, C-terminal C3F34_13070 PF01132 Elongation factor P (EF-P) OB domain C3F34_13075 PF13722 5TM C-terminal transporter carbon starvation CstA C3F34_13075 PF02554 Carbon starvation protein CstA C3F34_13080 PF04328 Selenoprotein, putative C3F34_13085 PF07726 ATPase family associated with various cellular activities (AAA) C3F34_13085 PF17863 AAA lid domain C3F34_13095 PF11992 Domain of unknown function (DUF3488) C3F34_13095 PF13559 Domain of unknown function (DUF4129) C3F34_13095 PF01841 Transglutaminase-like superfamily C3F34_13105 PF00589 Phage integrase family C3F34_13140 PF09588 YqaJ-like viral recombinase domain C3F34_13210 PF01695 IstB-like ATP binding protein C3F34_13370 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB C3F34_13375 PF01381 Helix-turn-helix C3F34_13430 PF00589 Phage integrase family C3F34_13430 PF13356 Arm DNA-binding domain C3F34_13445 PF13148 Protein of unknown function (DUF3987) C3F34_13460 PF02384 N-6 DNA Methylase C3F34_13485 PF07728 AAA domain (dynein-related subfamily) C3F34_13485 PF12102 Domain of unknown function (DUF3578) C3F34_13500 PF00860 Permease family C3F34_13505 PF00962 Adenosine/AMP deaminase C3F34_13510 PF01292 Prokaryotic cytochrome b561 C3F34_13525 PF01351 Ribonuclease HII C3F34_13530 PF02599 Global regulator protein family C3F34_13535 PF01842 ACT domain C3F34_13535 PF13840 ACT domain C3F34_13535 PF00696 Amino acid kinase family C3F34_13540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F34_13540 PF01411 tRNA synthetases class II (A) C3F34_13540 PF02272 DHHA1 domain C3F34_13545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F34_13545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F34_13565 PF03591 AzlC protein C3F34_13570 PF13404 AsnC-type helix-turn-helix domain C3F34_13570 PF01037 Lrp/AsnC ligand binding domain C3F34_13575 PF13393 Histidyl-tRNA synthetase C3F34_13580 PF00709 Adenylosuccinate synthetase C3F34_13595 PF00248 Aldo/keto reductase family C3F34_13600 PF13545 Crp-like helix-turn-helix domain C3F34_13600 PF00027 Cyclic nucleotide-binding domain C3F34_13605 PF02566 OsmC-like protein C3F34_13610 PF07724 AAA domain (Cdc48 subfamily) C3F34_13610 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_13610 PF10431 C-terminal, D2-small domain, of ClpB protein C3F34_13610 PF02861 Clp amino terminal domain, pathogenicity island component C3F34_13610 PF17871 AAA lid domain C3F34_13635 PF01170 Putative RNA methylase family UPF0020 C3F34_13635 PF02926 THUMP domain C3F34_13635 PF10672 S-adenosylmethionine-dependent methyltransferase C3F34_13650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F34_13650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F34_13655 PF01979 Amidohydrolase family C3F34_13660 PF00691 OmpA family C3F34_13660 PF05736 OprF membrane domain C3F34_13675 PF06968 Biotin and Thiamin Synthesis associated domain C3F34_13675 PF04055 Radical SAM superfamily C3F34_13680 PF08331 Domain of unknown function (DUF1730) C3F34_13685 PF03853 YjeF-related protein N-terminus C3F34_13685 PF01256 Carbohydrate kinase C3F34_13690 PF00708 Acylphosphatase C3F34_13695 PF02075 Crossover junction endodeoxyribonuclease RuvC C3F34_13700 PF07715 TonB-dependent Receptor Plug Domain C3F34_13700 PF00593 TonB dependent receptor C3F34_13710 PF01810 LysE type translocator C3F34_13725 PF08803 Putative mono-oxygenase ydhR C3F34_13730 PF00440 Bacterial regulatory proteins, tetR family C3F34_13730 PF08360 QacR-like protein, C-terminal region C3F34_13735 PF07166 Protein of unknown function (DUF1398) C3F34_13740 PF07715 TonB-dependent Receptor Plug Domain C3F34_13740 PF00593 TonB dependent receptor C3F34_13745 PF07702 UTRA domain C3F34_13745 PF00392 Bacterial regulatory proteins, gntR family C3F34_13750 PF17391 Urocanase N-terminal domain C3F34_13750 PF01175 Urocanase Rossmann-like domain C3F34_13750 PF17392 Urocanase C-terminal domain C3F34_13755 PF00221 Aromatic amino acid lyase C3F34_13760 PF00324 Amino acid permease C3F34_13765 PF01979 Amidohydrolase family C3F34_13770 PF00491 Arginase family C3F34_13775 PF13419 Haloacid dehalogenase-like hydrolase C3F34_13785 PF00120 Glutamine synthetase, catalytic domain C3F34_13795 PF07715 TonB-dependent Receptor Plug Domain C3F34_13795 PF00593 TonB dependent receptor C3F34_13805 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C3F34_13805 PF18381 YcaO cyclodehydratase C-terminal domain C3F34_13810 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_13815 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_13815 PF00107 Zinc-binding dehydrogenase C3F34_13820 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3F34_13825 PF05853 beta-keto acid cleavage enzyme C3F34_13830 PF07690 Major Facilitator Superfamily C3F34_13845 PF03601 Conserved hypothetical protein 698 C3F34_13865 PF00550 Phosphopantetheine attachment site C3F34_13865 PF07993 Male sterility protein C3F34_13865 PF00668 Condensation domain C3F34_13865 PF13193 AMP-binding enzyme C-terminal domain C3F34_13865 PF00501 AMP-binding enzyme C3F34_13870 PF13411 MerR HTH family regulatory protein C3F34_13985 PF00145 C-5 cytosine-specific DNA methylase C3F34_14220 PF00589 Phage integrase family C3F34_14230 PF09190 DALR domain C3F34_14230 PF01406 tRNA synthetases class I (C) catalytic domain C3F34_14235 PF01380 SIS domain C3F34_14235 PF00571 CBS domain C3F34_14250 PF03968 OstA-like protein C3F34_14255 PF00005 ABC transporter C3F34_14255 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F34_14260 PF01205 Uncharacterized protein family UPF0029 C3F34_14265 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_14275 PF01596 O-methyltransferase C3F34_14285 PF00037 4Fe-4S binding domain C3F34_14285 PF11953 Domain of unknown function (DUF3470) C3F34_14290 PF00155 Aminotransferase class I and II C3F34_14290 PF00392 Bacterial regulatory proteins, gntR family C3F34_14305 PF00488 MutS domain V C3F34_14305 PF05190 MutS family domain IV C3F34_14305 PF05192 MutS domain III C3F34_14305 PF05188 MutS domain II C3F34_14305 PF01624 MutS domain I C3F34_14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_14315 PF03466 LysR substrate binding domain C3F34_14320 PF07690 Major Facilitator Superfamily C3F34_14335 PF00561 alpha/beta hydrolase fold C3F34_14355 PF12833 Helix-turn-helix domain C3F34_14355 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F34_14360 PF00155 Aminotransferase class I and II C3F34_14360 PF00392 Bacterial regulatory proteins, gntR family C3F34_14370 PF02322 Cytochrome bd terminal oxidase subunit II C3F34_14375 PF01654 Cytochrome bd terminal oxidase subunit I C3F34_14385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F34_14385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F34_14390 PF03788 LrgA family C3F34_14395 PF04172 LrgB-like family C3F34_14405 PF02954 Bacterial regulatory protein, Fis family C3F34_14405 PF00158 Sigma-54 interaction domain C3F34_14405 PF01590 GAF domain C3F34_14415 PF00171 Aldehyde dehydrogenase family C3F34_14420 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_14420 PF00107 Zinc-binding dehydrogenase C3F34_14435 PF00701 Dihydrodipicolinate synthetase family C3F34_14440 PF00596 Class II Aldolase and Adducin N-terminal domain C3F34_14445 PF00155 Aminotransferase class I and II C3F34_14445 PF00392 Bacterial regulatory proteins, gntR family C3F34_14455 PF03594 Benzoate membrane transport protein C3F34_14480 PF00155 Aminotransferase class I and II C3F34_14480 PF00392 Bacterial regulatory proteins, gntR family C3F34_14485 PF12833 Helix-turn-helix domain C3F34_14485 PF06719 AraC-type transcriptional regulator N-terminus C3F34_14490 PF07690 Major Facilitator Superfamily C3F34_14495 PF01738 Dienelactone hydrolase family C3F34_14510 PF01613 Flavin reductase like domain C3F34_14520 PF02311 AraC-like ligand binding domain C3F34_14520 PF12833 Helix-turn-helix domain C3F34_14525 PF12146 Serine aminopeptidase, S33 C3F34_14530 PF00108 Thiolase, N-terminal domain C3F34_14530 PF02803 Thiolase, C-terminal domain C3F34_14535 PF01144 Coenzyme A transferase C3F34_14540 PF01144 Coenzyme A transferase C3F34_14545 PF04444 Catechol dioxygenase N terminus C3F34_14545 PF00775 Dioxygenase C3F34_14550 PF02426 Muconolactone delta-isomerase C3F34_14555 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3F34_14555 PF13378 Enolase C-terminal domain-like C3F34_14560 PF03466 LysR substrate binding domain C3F34_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_14580 PF01425 Amidase C3F34_14585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C3F34_14600 PF00355 Rieske [2Fe-2S] domain C3F34_14600 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F34_14615 PF00175 Oxidoreductase NAD-binding domain C3F34_14615 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_14620 PF01613 Flavin reductase like domain C3F34_14625 PF00175 Oxidoreductase NAD-binding domain C3F34_14625 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_14625 PF00970 Oxidoreductase FAD-binding domain C3F34_14630 PF00866 Ring hydroxylating beta subunit C3F34_14635 PF00355 Rieske [2Fe-2S] domain C3F34_14635 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F34_14650 PF00072 Response regulator receiver domain C3F34_14650 PF02954 Bacterial regulatory protein, Fis family C3F34_14650 PF00158 Sigma-54 interaction domain C3F34_14655 PF00753 Metallo-beta-lactamase superfamily C3F34_14660 PF00753 Metallo-beta-lactamase superfamily C3F34_14660 PF04273 Putative phosphatase (DUF442) C3F34_14665 PF01925 Sulfite exporter TauE/SafE C3F34_14670 PF12833 Helix-turn-helix domain C3F34_14675 PF00171 Aldehyde dehydrogenase family C3F34_14680 PF05199 GMC oxidoreductase C3F34_14690 PF06252 Protein of unknown function (DUF1018) C3F34_14710 PF00216 Bacterial DNA-binding protein C3F34_14790 PF03237 Terminase-like family C3F34_14815 PF06074 Protein of unknown function (DUF935) C3F34_14840 PF10124 Mu-like prophage major head subunit gpT C3F34_14910 PF04865 Baseplate J-like protein C3F34_14935 PF00501 AMP-binding enzyme C3F34_14950 PF00392 Bacterial regulatory proteins, gntR family C3F34_14950 PF07729 FCD domain C3F34_14965 PF16957 Malonate decarboxylase, alpha subunit, transporter C3F34_14970 PF06857 Malonate decarboxylase delta subunit (MdcD) C3F34_14975 PF01039 Carboxyl transferase domain C3F34_14990 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase C3F34_15005 PF14403 Circularly permuted ATP-grasp type 2 C3F34_15015 PF08379 Bacterial transglutaminase-like N-terminal region C3F34_15015 PF01841 Transglutaminase-like superfamily C3F34_15035 PF01168 Alanine racemase, N-terminal domain C3F34_15035 PF00842 Alanine racemase, C-terminal domain C3F34_15040 PF03796 DnaB-like helicase C terminal domain C3F34_15040 PF00772 DnaB-like helicase N terminal domain C3F34_15045 PF03948 Ribosomal protein L9, C-terminal domain C3F34_15045 PF01281 Ribosomal protein L9, N-terminal domain C3F34_15050 PF01084 Ribosomal protein S18 C3F34_15055 PF01250 Ribosomal protein S6 C3F34_15060 PF01040 UbiA prenyltransferase family C3F34_15065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C3F34_15070 PF00510 Cytochrome c oxidase subunit III C3F34_15075 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3F34_15080 PF06481 COX Aromatic Rich Motif C3F34_15080 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3F34_15090 PF02896 PEP-utilising enzyme, TIM barrel domain C3F34_15090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C3F34_15090 PF00391 PEP-utilising enzyme, mobile domain C3F34_15095 PF03618 Kinase/pyrophosphorylase C3F34_15105 PF00296 Luciferase-like monooxygenase C3F34_15120 PF00472 RF-1 domain C3F34_15120 PF03462 PCRF domain C3F34_15125 PF13847 Methyltransferase domain C3F34_15125 PF17827 PrmC N-terminal domain C3F34_15130 PF01062 Bestrophin, RFP-TM, chloride channel C3F34_15140 PF12833 Helix-turn-helix domain C3F34_15145 PF00106 short chain dehydrogenase C3F34_15150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_15150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_15150 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_15155 PF00501 AMP-binding enzyme C3F34_15155 PF13193 AMP-binding enzyme C-terminal domain C3F34_15185 PF00899 ThiF family C3F34_15190 PF03109 ABC1 family C3F34_15195 PF02152 Dihydroneopterin aldolase C3F34_15210 PF03232 Ubiquinone biosynthesis protein COQ7 C3F34_15215 PF07690 Major Facilitator Superfamily C3F34_15220 PF01103 Surface antigen C3F34_15220 PF17243 POTRA domain TamA domain 1 C3F34_15220 PF07244 Surface antigen variable number repeat C3F34_15225 PF04357 TamB, inner membrane protein subunit of TAM complex C3F34_15235 PF05523 WxcM-like, C-terminal C3F34_15245 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_15250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F34_15255 PF00535 Glycosyl transferase family 2 C3F34_15285 PF00330 Aconitase family (aconitate hydratase) C3F34_15285 PF06434 Aconitate hydratase 2 N-terminus C3F34_15285 PF11791 Aconitate B N-terminal domain C3F34_15300 PF00939 Sodium:sulfate symporter transmembrane region C3F34_15310 PF01037 Lrp/AsnC ligand binding domain C3F34_15320 PF02110 Hydroxyethylthiazole kinase family C3F34_15340 PF01433 Peptidase family M1 domain C3F34_15340 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C3F34_15340 PF11940 Domain of unknown function (DUF3458) Ig-like fold C3F34_15370 PF00582 Universal stress protein family C3F34_15380 PF00135 Carboxylesterase family C3F34_15385 PF00893 Small Multidrug Resistance protein C3F34_15390 PF03594 Benzoate membrane transport protein C3F34_15395 PF01810 LysE type translocator C3F34_15400 PF00923 Transaldolase/Fructose-6-phosphate aldolase C3F34_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_15405 PF03466 LysR substrate binding domain C3F34_15415 PF09335 SNARE associated Golgi protein C3F34_15420 PF02803 Thiolase, C-terminal domain C3F34_15420 PF00108 Thiolase, N-terminal domain C3F34_15440 PF12169 DNA polymerase III subunits gamma and tau domain III C3F34_15440 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C3F34_15440 PF12170 DNA polymerase III tau subunit V interacting with alpha C3F34_15445 PF03061 Thioesterase superfamily C3F34_15450 PF00465 Iron-containing alcohol dehydrogenase C3F34_15455 PF01451 Low molecular weight phosphotyrosine protein phosphatase C3F34_15460 PF01565 FAD binding domain C3F34_15460 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C3F34_15475 PF01645 Conserved region in glutamate synthase C3F34_15480 PF00072 Response regulator receiver domain C3F34_15480 PF00196 Bacterial regulatory proteins, luxR family C3F34_15485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_15485 PF07730 Histidine kinase C3F34_15490 PF08007 Cupin superfamily protein C3F34_15495 PF02545 Maf-like protein C3F34_15505 PF00162 Phosphoglycerate kinase C3F34_15515 PF01116 Fructose-bisphosphate aldolase class-II C3F34_15525 PF00881 Nitroreductase family C3F34_15530 PF03328 HpcH/HpaI aldolase/citrate lyase family C3F34_15535 PF00149 Calcineurin-like phosphoesterase C3F34_15540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F34_15545 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C3F34_15545 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F34_15555 PF09992 Phosphodiester glycosidase C3F34_15565 PF05958 tRNA (Uracil-5-)-methyltransferase C3F34_15570 PF14850 DNA-binding domain of Proline dehydrogenase C3F34_15570 PF01619 Proline dehydrogenase C3F34_15570 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3F34_15570 PF00171 Aldehyde dehydrogenase family C3F34_15575 PF01037 Lrp/AsnC ligand binding domain C3F34_15580 PF00474 Sodium:solute symporter family C3F34_15590 PF17757 UvrB interaction domain C3F34_15590 PF02559 CarD-like/TRCF domain C3F34_15590 PF00271 Helicase conserved C-terminal domain C3F34_15590 PF00270 DEAD/DEAH box helicase C3F34_15590 PF03461 TRCF domain C3F34_15600 PF00211 Adenylate and Guanylate cyclase catalytic domain C3F34_15605 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_15610 PF00012 Hsp70 protein C3F34_15615 PF07743 HSCB C-terminal oligomerisation domain C3F34_15615 PF00226 DnaJ domain C3F34_15620 PF01521 Iron-sulphur cluster biosynthesis C3F34_15625 PF01592 NifU-like N terminal domain C3F34_15630 PF00266 Aminotransferase class-V C3F34_15635 PF02082 Transcriptional regulator C3F34_15650 PF00216 Bacterial DNA-binding protein C3F34_15655 PF09312 SurA N-terminal domain C3F34_15680 PF01230 HIT domain C3F34_15695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F34_15695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F34_15705 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F34_15710 PF02575 YbaB/EbfC DNA-binding family C3F34_15715 PF13662 Toprim domain C3F34_15715 PF02132 RecR protein C3F34_15720 PF01612 3'-5' exonuclease C3F34_15720 PF00570 HRDC domain C3F34_15725 PF05166 YcgL domain C3F34_15735 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_15735 PF17862 AAA+ lid domain C3F34_15735 PF01434 Peptidase family M41 C3F34_15745 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_15750 PF00478 IMP dehydrogenase / GMP reductase domain C3F34_15750 PF00571 CBS domain C3F34_15775 PF05193 Peptidase M16 inactive domain C3F34_15775 PF00675 Insulinase (Peptidase family M16) C3F34_15780 PF02881 SRP54-type protein, helical bundle domain C3F34_15780 PF00448 SRP54-type protein, GTPase domain C3F34_15835 PF12832 MFS_1 like family C3F34_15840 PF01425 Amidase C3F34_15845 PF07694 5TMR of 5TMR-LYT C3F34_15845 PF00990 Diguanylate cyclase, GGDEF domain C3F34_15855 PF00289 Biotin carboxylase, N-terminal domain C3F34_15855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F34_15855 PF02785 Biotin carboxylase C-terminal domain C3F34_15860 PF00364 Biotin-requiring enzyme C3F34_15865 PF01220 Dehydroquinase class II C3F34_15870 PF13438 Domain of unknown function (DUF4113) C3F34_15870 PF00817 impB/mucB/samB family C3F34_15870 PF11799 impB/mucB/samB family C-terminal domain C3F34_15875 PF00717 Peptidase S24-like C3F34_15885 PF01638 HxlR-like helix-turn-helix C3F34_15905 PF02635 DsrE/DsrF-like family C3F34_15910 PF16363 GDP-mannose 4,6 dehydratase C3F34_15915 PF00206 Lyase C3F34_15915 PF10415 Fumarase C C-terminus C3F34_15930 PF03466 LysR substrate binding domain C3F34_15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_15935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_15935 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_15935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_15950 PF00106 short chain dehydrogenase C3F34_15955 PF00535 Glycosyl transferase family 2 C3F34_15990 PF00892 EamA-like transporter family C3F34_15995 PF00392 Bacterial regulatory proteins, gntR family C3F34_15995 PF00155 Aminotransferase class I and II C3F34_16000 PF13091 PLD-like domain C3F34_16005 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_16005 PF00107 Zinc-binding dehydrogenase C3F34_16015 PF00487 Fatty acid desaturase C3F34_16020 PF00793 DAHP synthetase I family C3F34_16025 PF07690 Major Facilitator Superfamily C3F34_16030 PF01597 Glycine cleavage H-protein C3F34_16035 PF12833 Helix-turn-helix domain C3F34_16035 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F34_16045 PF00664 ABC transporter transmembrane region C3F34_16045 PF00005 ABC transporter C3F34_16060 PF01810 LysE type translocator C3F34_16070 PF00924 Mechanosensitive ion channel C3F34_16075 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) C3F34_16085 PF00375 Sodium:dicarboxylate symporter family C3F34_16090 PF00916 Sulfate permease family C3F34_16090 PF01740 STAS domain C3F34_16100 PF01553 Acyltransferase C3F34_16105 PF12697 Alpha/beta hydrolase family C3F34_16110 PF00296 Luciferase-like monooxygenase C3F34_16115 PF00857 Isochorismatase family C3F34_16120 PF01042 Endoribonuclease L-PSP C3F34_16125 PF01613 Flavin reductase like domain C3F34_16130 PF00860 Permease family C3F34_16135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F34_16135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F34_16140 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_16145 PF00682 HMGL-like C3F34_16150 PF02785 Biotin carboxylase C-terminal domain C3F34_16150 PF00289 Biotin carboxylase, N-terminal domain C3F34_16150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F34_16150 PF00364 Biotin-requiring enzyme C3F34_16155 PF00378 Enoyl-CoA hydratase/isomerase C3F34_16160 PF01039 Carboxyl transferase domain C3F34_16165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_16165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_16165 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_16170 PF00440 Bacterial regulatory proteins, tetR family C3F34_16170 PF17925 Tetracyclin repressor-like, C-terminal domain C3F34_16175 PF00501 AMP-binding enzyme C3F34_16175 PF13193 AMP-binding enzyme C-terminal domain C3F34_16180 PF06968 Biotin and Thiamin Synthesis associated domain C3F34_16180 PF04055 Radical SAM superfamily C3F34_16185 PF13649 Methyltransferase domain C3F34_16195 PF00005 ABC transporter C3F34_16205 PF07690 Major Facilitator Superfamily C3F34_16210 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_16210 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F34_16210 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F34_16210 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F34_16210 PF04324 BFD-like [2Fe-2S] binding domain C3F34_16215 PF04324 BFD-like [2Fe-2S] binding domain C3F34_16215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F34_16215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F34_16215 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F34_16215 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_16220 PF01568 Molydopterin dinucleotide binding domain C3F34_16220 PF00384 Molybdopterin oxidoreductase C3F34_16220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F34_16220 PF04324 BFD-like [2Fe-2S] binding domain C3F34_16225 PF12804 MobA-like NTP transferase domain C3F34_16230 PF06463 Molybdenum Cofactor Synthesis C C3F34_16230 PF04055 Radical SAM superfamily C3F34_16240 PF02391 MoaE protein C3F34_16245 PF01967 MoaC family C3F34_16245 PF00994 Probable molybdopterin binding domain C3F34_16250 PF03453 MoeA N-terminal region (domain I and II) C3F34_16250 PF00994 Probable molybdopterin binding domain C3F34_16250 PF03454 MoeA C-terminal region (domain IV) C3F34_16260 PF00528 Binding-protein-dependent transport system inner membrane component C3F34_16265 PF00005 ABC transporter C3F34_16265 PF03459 TOBE domain C3F34_16270 PF03466 LysR substrate binding domain C3F34_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16275 PF00999 Sodium/hydrogen exchanger family C3F34_16275 PF02254 TrkA-N domain C3F34_16290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_16295 PF00005 ABC transporter C3F34_16310 PF00206 Lyase C3F34_16310 PF10415 Fumarase C C-terminus C3F34_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16315 PF03466 LysR substrate binding domain C3F34_16320 PF03466 LysR substrate binding domain C3F34_16320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16335 PF07519 Tannase and feruloyl esterase C3F34_16350 PF03573 outer membrane porin, OprD family C3F34_16355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_16355 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_16355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_16360 PF00501 AMP-binding enzyme C3F34_16360 PF13193 AMP-binding enzyme C-terminal domain C3F34_16365 PF00171 Aldehyde dehydrogenase family C3F34_16370 PF00378 Enoyl-CoA hydratase/isomerase C3F34_16375 PF07690 Major Facilitator Superfamily C3F34_16390 PF00175 Oxidoreductase NAD-binding domain C3F34_16390 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_16395 PF00355 Rieske [2Fe-2S] domain C3F34_16405 PF03781 Sulfatase-modifying factor enzyme 1 C3F34_16410 PF00884 Sulfatase C3F34_16415 PF07690 Major Facilitator Superfamily C3F34_16420 PF03573 outer membrane porin, OprD family C3F34_16435 PF01037 Lrp/AsnC ligand binding domain C3F34_16435 PF13404 AsnC-type helix-turn-helix domain C3F34_16440 PF00202 Aminotransferase class-III C3F34_16445 PF04958 Arginine N-succinyltransferase beta subunit C3F34_16460 PF00324 Amino acid permease C3F34_16475 PF17763 Glutaminase/Asparaginase C-terminal domain C3F34_16475 PF00710 Asparaginase, N-terminal C3F34_16480 PF00375 Sodium:dicarboxylate symporter family C3F34_16500 PF00392 Bacterial regulatory proteins, gntR family C3F34_16500 PF00155 Aminotransferase class I and II C3F34_16515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F34_16515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3F34_16520 PF13193 AMP-binding enzyme C-terminal domain C3F34_16520 PF00501 AMP-binding enzyme C3F34_16530 PF00834 Ribulose-phosphate 3 epimerase family C3F34_16535 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3F34_16540 PF01047 MarR family C3F34_16545 PF01047 MarR family C3F34_16565 PF03466 LysR substrate binding domain C3F34_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16570 PF02321 Outer membrane efflux protein C3F34_16575 PF00873 AcrB/AcrD/AcrF family C3F34_16580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_16585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16585 PF03466 LysR substrate binding domain C3F34_16595 PF00487 Fatty acid desaturase C3F34_16600 PF00301 Rubredoxin C3F34_16620 PF02472 Biopolymer transport protein ExbD/TolR C3F34_16625 PF01618 MotA/TolQ/ExbB proton channel family C3F34_16630 PF03544 Gram-negative bacterial TonB protein C-terminal C3F34_16635 PF00043 Glutathione S-transferase, C-terminal domain C3F34_16635 PF13417 Glutathione S-transferase, N-terminal domain C3F34_16640 PF07715 TonB-dependent Receptor Plug Domain C3F34_16640 PF00593 TonB dependent receptor C3F34_16645 PF00296 Luciferase-like monooxygenase C3F34_16655 PF00296 Luciferase-like monooxygenase C3F34_16665 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F34_16685 PF00266 Aminotransferase class-V C3F34_16695 PF04055 Radical SAM superfamily C3F34_16700 PF00676 Dehydrogenase E1 component C3F34_16705 PF02779 Transketolase, pyrimidine binding domain C3F34_16705 PF02780 Transketolase, C-terminal domain C3F34_16710 PF02817 e3 binding domain C3F34_16710 PF00364 Biotin-requiring enzyme C3F34_16710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F34_16715 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_16715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F34_16720 PF00106 short chain dehydrogenase C3F34_16725 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_16725 PF00107 Zinc-binding dehydrogenase C3F34_16750 PF09905 DNA-binding protein VF530 C3F34_16755 PF16925 Tetracyclin repressor-like, C-terminal domain C3F34_16755 PF00440 Bacterial regulatory proteins, tetR family C3F34_16760 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_16760 PF00107 Zinc-binding dehydrogenase C3F34_16840 PF12697 Alpha/beta hydrolase family C3F34_16845 PF00753 Metallo-beta-lactamase superfamily C3F34_16855 PF04143 Sulphur transport C3F34_16860 PF03466 LysR substrate binding domain C3F34_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_16865 PF03788 LrgA family C3F34_16870 PF04172 LrgB-like family C3F34_16875 PF02654 Cobalamin-5-phosphate synthase C3F34_16885 PF02277 Phosphoribosyltransferase C3F34_16890 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase C3F34_16900 PF13419 Haloacid dehalogenase-like hydrolase C3F34_16915 PF00313 'Cold-shock' DNA-binding domain C3F34_16930 PF04073 Aminoacyl-tRNA editing domain C3F34_16935 PF01066 CDP-alcohol phosphatidyltransferase C3F34_16940 PF12146 Serine aminopeptidase, S33 C3F34_16940 PF12147 Putative methyltransferase C3F34_16945 PF00782 Dual specificity phosphatase, catalytic domain C3F34_16990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F34_16990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F34_17000 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C3F34_17005 PF10431 C-terminal, D2-small domain, of ClpB protein C3F34_17005 PF02861 Clp amino terminal domain, pathogenicity island component C3F34_17005 PF17871 AAA lid domain C3F34_17005 PF00004 ATPase family associated with various cellular activities (AAA) C3F34_17005 PF07724 AAA domain (Cdc48 subfamily) C3F34_17010 PF02617 ATP-dependent Clp protease adaptor protein ClpS C3F34_17020 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F34_17020 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F34_17025 PF17151 Periplasmic sensor domain C3F34_17025 PF00990 Diguanylate cyclase, GGDEF domain C3F34_17035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C3F34_17040 PF00585 C-terminal regulatory domain of Threonine dehydratase C3F34_17040 PF00291 Pyridoxal-phosphate dependent enzyme C3F34_17050 PF02254 TrkA-N domain C3F34_17050 PF02080 TrkA-C domain C3F34_17055 PF02386 Cation transport protein C3F34_17060 PF02253 Phospholipase A1 C3F34_17065 PF00675 Insulinase (Peptidase family M16) C3F34_17065 PF05193 Peptidase M16 inactive domain C3F34_17065 PF08367 Peptidase M16C associated C3F34_17075 PF00294 pfkB family carbohydrate kinase C3F34_17085 PF07290 Protein of unknown function (DUF1449) C3F34_17100 PF01654 Cytochrome bd terminal oxidase subunit I C3F34_17105 PF02322 Cytochrome bd terminal oxidase subunit II C3F34_17110 PF08173 Membrane bound YbgT-like protein C3F34_17125 PF01264 Chorismate synthase C3F34_17130 PF05175 Methyltransferase small domain C3F34_17140 PF03109 ABC1 family C3F34_17145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_17145 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_17145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_17150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_17150 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_17150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_17155 PF00583 Acetyltransferase (GNAT) family C3F34_17160 PF00487 Fatty acid desaturase C3F34_17165 PF12833 Helix-turn-helix domain C3F34_17165 PF12852 Cupin C3F34_17170 PF02684 Lipid-A-disaccharide synthetase C3F34_17175 PF07715 TonB-dependent Receptor Plug Domain C3F34_17175 PF00593 TonB dependent receptor C3F34_17195 PF01925 Sulfite exporter TauE/SafE C3F34_17200 PF00793 DAHP synthetase I family C3F34_17210 PF02542 YgbB family C3F34_17220 PF01266 FAD dependent oxidoreductase C3F34_17225 PF01098 Cell cycle protein C3F34_17230 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C3F34_17235 PF04977 Septum formation initiator C3F34_17240 PF00113 Enolase, C-terminal TIM barrel domain C3F34_17240 PF03952 Enolase, N-terminal domain C3F34_17245 PF00793 DAHP synthetase I family C3F34_17250 PF06418 CTP synthase N-terminus C3F34_17250 PF00117 Glutamine amidotransferase class-I C3F34_17275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_17275 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_17290 PF03466 LysR substrate binding domain C3F34_17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_17295 PF13378 Enolase C-terminal domain-like C3F34_17295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C3F34_17300 PF02426 Muconolactone delta-isomerase C3F34_17305 PF00775 Dioxygenase C3F34_17305 PF04444 Catechol dioxygenase N terminus C3F34_17310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C3F34_17310 PF00355 Rieske [2Fe-2S] domain C3F34_17315 PF00866 Ring hydroxylating beta subunit C3F34_17320 PF00970 Oxidoreductase FAD-binding domain C3F34_17320 PF00175 Oxidoreductase NAD-binding domain C3F34_17320 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F34_17325 PF00106 short chain dehydrogenase C3F34_17330 PF03594 Benzoate membrane transport protein C3F34_17335 PF01144 Coenzyme A transferase C3F34_17340 PF01144 Coenzyme A transferase C3F34_17345 PF02803 Thiolase, C-terminal domain C3F34_17345 PF00108 Thiolase, N-terminal domain C3F34_17350 PF12146 Serine aminopeptidase, S33 C3F34_17360 PF02515 CoA-transferase family III C3F34_17365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F34_17365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F34_17365 PF02770 Acyl-CoA dehydrogenase, middle domain C3F34_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_17370 PF03466 LysR substrate binding domain C3F34_17375 PF02146 Sir2 family C3F34_17400 PF13460 NAD(P)H-binding C3F34_17405 PF01649 Ribosomal protein S20 C3F34_17410 PF12561 ToxR activated gene A lipoprotein domain C3F34_17410 PF00041 Fibronectin type III domain C3F34_17420 PF00459 Inositol monophosphatase family C3F34_17425 PF13419 Haloacid dehalogenase-like hydrolase C3F34_17430 PF01479 S4 domain C3F34_17435 PF00154 recA bacterial DNA recombination protein C3F34_17440 PF02631 RecX family C3F34_17455 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C3F34_17455 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_17460 PF07977 FabA-like domain C3F34_17465 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C3F34_17465 PF00132 Bacterial transferase hexapeptide (six repeats) C3F34_17475 PF01103 Surface antigen C3F34_17475 PF07244 Surface antigen variable number repeat C3F34_17480 PF13180 PDZ domain C3F34_17480 PF17820 PDZ domain C3F34_17480 PF02163 Peptidase family M50 C3F34_17485 PF13288 DXP reductoisomerase C-terminal domain C3F34_17485 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C3F34_17485 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C3F34_17495 PF01255 Putative undecaprenyl diphosphate synthase C3F34_17500 PF01765 Ribosome recycling factor C3F34_17505 PF00696 Amino acid kinase family C3F34_17510 PF00919 Uncharacterized protein family UPF0004 C3F34_17510 PF18693 TRAM domain C3F34_17510 PF04055 Radical SAM superfamily C3F34_17515 PF00989 PAS fold C3F34_17515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_17515 PF00512 His Kinase A (phospho-acceptor) domain C3F34_17520 PF02954 Bacterial regulatory protein, Fis family C3F34_17520 PF00072 Response regulator receiver domain C3F34_17520 PF00158 Sigma-54 interaction domain C3F34_17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_17530 PF03466 LysR substrate binding domain C3F34_17535 PF00557 Metallopeptidase family M24 C3F34_17545 PF05525 Branched-chain amino acid transport protein C3F34_17565 PF03741 Integral membrane protein TerC family C3F34_17565 PF03471 Transporter associated domain C3F34_17585 PF01274 Malate synthase C3F34_17590 PF03969 AFG1-like ATPase C3F34_17595 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F34_17595 PF12833 Helix-turn-helix domain C3F34_17600 PF03956 Lysine exporter LysO C3F34_17610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C3F34_17620 PF00216 Bacterial DNA-binding protein C3F34_17625 PF00575 S1 RNA binding domain C3F34_17630 PF02224 Cytidylate kinase C3F34_17640 PF14437 MafB19-like deaminase C3F34_17650 PF03167 Uracil DNA glycosylase superfamily C3F34_17665 PF07963 Prokaryotic N-terminal methylation motif C3F34_17665 PF11612 Type II secretion system (T2SS), protein J C3F34_17670 PF02501 Type II secretion system (T2SS), protein I C3F34_17670 PF07963 Prokaryotic N-terminal methylation motif C3F34_17680 PF00440 Bacterial regulatory proteins, tetR family C3F34_17685 PF01026 TatD related DNase C3F34_17695 PF09115 DNA polymerase III, delta subunit, C terminal C3F34_17700 PF02348 Cytidylyltransferase C3F34_17705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C3F34_17710 PF00664 ABC transporter transmembrane region C3F34_17710 PF00005 ABC transporter C3F34_17720 PF01618 MotA/TolQ/ExbB proton channel family C3F34_17725 PF02195 ParB-like nuclease domain C3F34_17725 PF17762 HTH domain found in ParB protein C3F34_17730 PF13614 AAA domain C3F34_17735 PF02527 rRNA small subunit methyltransferase G C3F34_17740 PF00483 Nucleotidyl transferase C3F34_17745 PF01636 Phosphotransferase enzyme family C3F34_17750 PF04453 LPS transport system D C3F34_17750 PF03968 OstA-like protein C3F34_17760 PF09312 SurA N-terminal domain C3F34_17760 PF00639 PPIC-type PPIASE domain C3F34_17765 PF17209 Hfq protein C3F34_17775 PF08676 MutL C terminal dimerisation domain C3F34_17775 PF01119 DNA mismatch repair protein, C-terminal domain C3F34_17780 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C3F34_17785 PF01479 S4 domain C3F34_17785 PF00849 RNA pseudouridylate synthase C3F34_17800 PF01479 S4 domain C3F34_17800 PF00849 RNA pseudouridylate synthase C3F34_17805 PF04284 Protein of unknown function (DUF441) C3F34_17810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_17810 PF03466 LysR substrate binding domain C3F34_17815 PF07690 Major Facilitator Superfamily C3F34_17820 PF00027 Cyclic nucleotide-binding domain C3F34_17820 PF00520 Ion transport protein C3F34_17825 PF05970 PIF1-like helicase C3F34_17825 PF14493 Helix-turn-helix domain C3F34_17835 PF00465 Iron-containing alcohol dehydrogenase C3F34_17850 PF00171 Aldehyde dehydrogenase family C3F34_17855 PF00892 EamA-like transporter family C3F34_17865 PF01323 DSBA-like thioredoxin domain C3F34_17880 PF02540 NAD synthase C3F34_17880 PF00117 Glutamine amidotransferase class-I C3F34_17880 PF00958 GMP synthase C terminal domain C3F34_17885 PF04264 YceI-like domain C3F34_17890 PF02780 Transketolase, C-terminal domain C3F34_17890 PF02779 Transketolase, pyrimidine binding domain C3F34_17890 PF00456 Transketolase, thiamine diphosphate binding domain C3F34_17900 PF00438 S-adenosylmethionine synthetase, N-terminal domain C3F34_17900 PF02772 S-adenosylmethionine synthetase, central domain C3F34_17900 PF02773 S-adenosylmethionine synthetase, C-terminal domain C3F34_17925 PF00069 Protein kinase domain C3F34_17925 PF03793 PASTA domain C3F34_17945 PF00814 Glycoprotease family C3F34_17950 PF01165 Ribosomal protein S21 C3F34_17955 PF09424 Yqey-like protein C3F34_17970 PF01435 Peptidase family M48 C3F34_17975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F34_17975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F34_17990 PF00156 Phosphoribosyl transferase domain C3F34_18000 PF01180 Dihydroorotate dehydrogenase C3F34_18020 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3F34_18020 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3F34_18025 PF00881 Nitroreductase family C3F34_18035 PF00270 DEAD/DEAH box helicase C3F34_18035 PF00271 Helicase conserved C-terminal domain C3F34_18040 PF00313 'Cold-shock' DNA-binding domain C3F34_18050 PF00140 Sigma-70 factor, region 1.2 C3F34_18050 PF04545 Sigma-70, region 4 C3F34_18050 PF04542 Sigma-70 region 2 C3F34_18055 PF04241 Protein of unknown function (DUF423) C3F34_18065 PF05690 Thiazole biosynthesis protein ThiG C3F34_18075 PF02798 Glutathione S-transferase, N-terminal domain C3F34_18075 PF00043 Glutathione S-transferase, C-terminal domain C3F34_18085 PF02390 Putative methyltransferase C3F34_18105 PF00593 TonB dependent receptor C3F34_18105 PF07715 TonB-dependent Receptor Plug Domain C3F34_18110 PF13360 PQQ-like domain C3F34_18110 PF01011 PQQ enzyme repeat C3F34_18115 PF04966 Carbohydrate-selective porin, OprB family C3F34_18120 PF05048 Periplasmic copper-binding protein (NosD) C3F34_18125 PF01487 Type I 3-dehydroquinase C3F34_18130 PF00775 Dioxygenase C3F34_18135 PF00775 Dioxygenase C3F34_18135 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal C3F34_18140 PF02627 Carboxymuconolactone decarboxylase family C3F34_18145 PF07690 Major Facilitator Superfamily C3F34_18150 PF00561 alpha/beta hydrolase fold C3F34_18155 PF10397 Adenylosuccinate lyase C-terminus C3F34_18155 PF00206 Lyase C3F34_18160 PF02803 Thiolase, C-terminal domain C3F34_18160 PF00108 Thiolase, N-terminal domain C3F34_18165 PF01144 Coenzyme A transferase C3F34_18170 PF01144 Coenzyme A transferase C3F34_18185 PF00893 Small Multidrug Resistance protein C3F34_18250 PF01051 Initiator Replication protein C3F34_18265 PF00440 Bacterial regulatory proteins, tetR family C3F34_18265 PF02909 Tetracyclin repressor-like, C-terminal domain C3F34_18270 PF07690 Major Facilitator Superfamily C3F34_18275 PF00239 Resolvase, N terminal domain C3F34_18275 PF02796 Helix-turn-helix domain of resolvase C3F34_18280 PF01636 Phosphotransferase enzyme family C3F34_18305 PF04221 RelB antitoxin C3F34_18435 PF13086 AAA domain C3F34_18435 PF13087 AAA domain C3F34_18435 PF13195 Protein of unknown function (DUF4011) C3F34_18435 PF13086 AAA domain C3F34_18435 PF13087 AAA domain C3F34_18435 PF13195 Protein of unknown function (DUF4011) C3F34_18465 PF02661 Fic/DOC family C3F34_18485 PF00245 Alkaline phosphatase C3F34_18490 PF00245 Alkaline phosphatase C3F34_18505 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3F34_18530 PF13610 DDE domain C3F34_18540 PF01292 Prokaryotic cytochrome b561 C3F34_18555 PF01569 PAP2 superfamily C3F34_18575 PF13533 Biotin-lipoyl like C3F34_18580 PF00873 AcrB/AcrD/AcrF family C3F34_18595 PF00072 Response regulator receiver domain C3F34_18595 PF00486 Transcriptional regulatory protein, C terminal C3F34_18600 PF08521 Two-component sensor kinase N-terminal C3F34_18600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_18600 PF00512 His Kinase A (phospho-acceptor) domain C3F34_18620 PF05973 Phage derived protein Gp49-like (DUF891) C3F34_18715 PF13635 Domain of unknown function (DUF4143) C3F34_18715 PF13173 AAA domain C3F34_18730 PF13610 DDE domain C3F34_18740 PF01545 Cation efflux family C3F34_18740 PF16916 Dimerisation domain of Zinc Transporter C3F34_18745 PF03960 ArsC family C3F34_18750 PF01022 Bacterial regulatory protein, arsR family C3F34_18765 PF00582 Universal stress protein family C3F34_18770 PF01022 Bacterial regulatory protein, arsR family C3F34_18780 PF01758 Sodium Bile acid symporter family C3F34_18785 PF03358 NADPH-dependent FMN reductase C3F34_18790 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_18805 PF01740 STAS domain C3F34_18805 PF00916 Sulfate permease family C3F34_18810 PF13610 DDE domain C3F34_18835 PF00005 ABC transporter C3F34_18860 PF02322 Cytochrome bd terminal oxidase subunit II C3F34_18865 PF01654 Cytochrome bd terminal oxidase subunit I C3F34_18925 PF00581 Rhodanese-like domain C3F34_18930 PF01925 Sulfite exporter TauE/SafE C3F34_18935 PF00753 Metallo-beta-lactamase superfamily C3F34_18945 PF04143 Sulphur transport C3F34_18985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F34_18990 PF00873 AcrB/AcrD/AcrF family C3F34_18995 PF01545 Cation efflux family C3F34_19010 PF13610 DDE domain C3F34_19045 PF02028 BCCT, betaine/carnitine/choline family transporter C3F34_19050 PF13977 BetI-type transcriptional repressor, C-terminal C3F34_19050 PF00440 Bacterial regulatory proteins, tetR family C3F34_19055 PF00171 Aldehyde dehydrogenase family C3F34_19060 PF05199 GMC oxidoreductase C3F34_19060 PF00732 GMC oxidoreductase C3F34_19090 PF02195 ParB-like nuclease domain C3F34_19090 PF17762 HTH domain found in ParB protein C3F34_19095 PF13614 AAA domain C3F34_19165 PF11799 impB/mucB/samB family C-terminal domain C3F34_19165 PF13438 Domain of unknown function (DUF4113) C3F34_19165 PF00817 impB/mucB/samB family C3F34_19170 PF01726 LexA DNA binding domain C3F34_19170 PF00717 Peptidase S24-like C3F34_19195 PF04233 Phage Mu protein F like protein C3F34_19200 PF13356 Arm DNA-binding domain C3F34_19200 PF00589 Phage integrase family C3F34_19220 PF05194 UreE urease accessory protein, C-terminal domain C3F34_19220 PF02814 UreE urease accessory protein, N-terminal domain C3F34_19225 PF01730 UreF C3F34_19230 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3F34_19240 PF01774 UreD urease accessory protein C3F34_19245 PF00547 Urease, gamma subunit C3F34_19250 PF00699 Urease beta subunit C3F34_19260 PF00449 Urease alpha-subunit, N-terminal domain C3F34_19260 PF01979 Amidohydrolase family C3F34_19275 PF00576 HIUase/Transthyretin family C3F34_19280 PF00860 Permease family C3F34_19285 PF03502 Nucleoside-specific channel-forming protein, Tsx C3F34_19290 PF04115 Ureidoglycolate lyase C3F34_19295 PF03561 Allantoicase repeat C3F34_19300 PF01494 FAD binding domain C3F34_19305 PF03466 LysR substrate binding domain C3F34_19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_19310 PF00355 Rieske [2Fe-2S] domain C3F34_19320 PF00860 Permease family C3F34_19325 PF03502 Nucleoside-specific channel-forming protein, Tsx C3F34_19340 PF03466 LysR substrate binding domain C3F34_19340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F34_19350 PF02608 ABC transporter substrate-binding protein PnrA-like C3F34_19360 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C3F34_19360 PF03171 2OG-Fe(II) oxygenase superfamily C3F34_19370 PF00355 Rieske [2Fe-2S] domain C3F34_19380 PF02583 Metal-sensitive transcriptional repressor C3F34_19385 PF00107 Zinc-binding dehydrogenase C3F34_19385 PF08240 Alcohol dehydrogenase GroES-like domain C3F34_19390 PF00756 Putative esterase C3F34_19405 PF00465 Iron-containing alcohol dehydrogenase C3F34_19415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F34_19425 PF16925 Tetracyclin repressor-like, C-terminal domain C3F34_19425 PF00440 Bacterial regulatory proteins, tetR family C3F34_19430 PF16884 N-terminal domain of oxidoreductase C3F34_19430 PF00107 Zinc-binding dehydrogenase C3F34_19440 PF13737 Transposase DDE domain C3F34_19465 PF13635 Domain of unknown function (DUF4143) C3F34_19465 PF13173 AAA domain C3F34_19500 PF13610 DDE domain C3F34_19505 PF00939 Sodium:sulfate symporter transmembrane region C3F34_19550 PF13194 Domain of unknown function (DUF4010) C3F34_19555 PF00512 His Kinase A (phospho-acceptor) domain C3F34_19555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F34_19555 PF00672 HAMP domain C3F34_19560 PF00072 Response regulator receiver domain C3F34_19560 PF00486 Transcriptional regulatory protein, C terminal C3F34_19570 PF07732 Multicopper oxidase C3F34_19570 PF07731 Multicopper oxidase C3F34_19570 PF00394 Multicopper oxidase C3F34_19605 PF02421 Ferrous iron transport protein B C3F34_19605 PF07670 Nucleoside recognition C3F34_19605 PF07664 Ferrous iron transport protein B C terminus C3F34_19615 PF01545 Cation efflux family C3F34_19620 PF13411 MerR HTH family regulatory protein C3F34_19645 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB C3F34_19650 PF01556 DnaJ C terminal domain C3F34_19650 PF00684 DnaJ central domain C3F34_19650 PF00226 DnaJ domain C3F34_19660 PF01051 Initiator Replication protein C3F34_19690 PF01636 Phosphotransferase enzyme family C3F34_19695 PF02796 Helix-turn-helix domain of resolvase C3F34_19695 PF00239 Resolvase, N terminal domain C3F34_19700 PF07690 Major Facilitator Superfamily C3F34_19710 PF00376 MerR family regulatory protein C3F34_19710 PF09278 MerR, DNA binding C3F34_19720 PF01740 STAS domain C3F34_19720 PF00916 Sulfate permease family C3F34_19740 PF05973 Phage derived protein Gp49-like (DUF891) C3F34_19745 PF01381 Helix-turn-helix C3F34_19775 PF01636 Phosphotransferase enzyme family C3F34_19780 PF00239 Resolvase, N terminal domain C3F34_19780 PF02796 Helix-turn-helix domain of resolvase C3F34_19785 PF07690 Major Facilitator Superfamily C3F34_19790 PF02909 Tetracyclin repressor-like, C-terminal domain C3F34_19790 PF00440 Bacterial regulatory proteins, tetR family C3F34_19825 PF01051 Initiator Replication protein C3F34_19835 PF00582 Universal stress protein family C3F34_19840 PF01526 Tn3 transposase DDE domain C3F34_19840 PF13700 Domain of unknown function (DUF4158) C3F34_19845 PF00239 Resolvase, N terminal domain C3F34_19845 PF02796 Helix-turn-helix domain of resolvase C3F34_19850 PF00005 ABC transporter C3F34_19870 PF01695 IstB-like ATP binding protein C3F34_19875 PF02796 Helix-turn-helix domain of resolvase C3F34_19875 PF00665 Integrase core domain C3F34_19885 PF00589 Phage integrase family C3F34_19885 PF02899 Phage integrase, N-terminal SAM-like domain C3F34_19920 PF00893 Small Multidrug Resistance protein C3F34_19925 PF00809 Pterin binding enzyme C3F34_19945 PF05052 MerE protein C3F34_19950 PF13411 MerR HTH family regulatory protein C3F34_19955 PF00403 Heavy-metal-associated domain C3F34_19955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F34_19955 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F34_19965 PF00403 Heavy-metal-associated domain C3F34_19975 PF00589 Phage integrase family C3F34_20010 PF09588 YqaJ-like viral recombinase domain C3F34_20080 PF01695 IstB-like ATP binding protein