locus-tag	class	description
C3F34_00005	COG1414	Transcriptional regulator
C3F34_00010	COG0531	amino acid
C3F34_00015	COG0646	methionine synthase
C3F34_00015	COG1410	methionine synthase
C3F34_00055	COG0864	Transcriptional regulator
C3F34_00060	COG0439	Biotin carboxylase
C3F34_00075	COG3706	GGDEF domain
C3F34_00080	COG2814	Major facilitator Superfamily
C3F34_00090	COG0445	tRNA wobble uridine modification
C3F34_00120	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
C3F34_00125	COG0138	bifunctional purine biosynthesis protein purh
C3F34_00130	COG0151	Belongs to the GarS family
C3F34_00140	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3F34_00145	COG1464	Belongs to the NlpA lipoprotein family
C3F34_00150	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3F34_00155	COG2011	ABC-type metal ion transport system permease component
C3F34_00175	COG1045	serine acetyltransferase
C3F34_00190	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_00195	COG2909	trisaccharide binding
C3F34_00205	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_00210	COG0300	oxidoreductase activity
C3F34_00215	COG0300	oxidoreductase activity
C3F34_00225	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3F34_00230	COG1309	transcriptional regulator
C3F34_00235	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_00250	COG0579	oxidoreductase
C3F34_00295	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_00300	COG0531	amino acid
C3F34_00305	COG0531	amino acid
C3F34_00310	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3F34_00350	COG0204	Acyl-transferase
C3F34_00385	COG1464	Belongs to the NlpA lipoprotein family
C3F34_00390	COG1464	Belongs to the NlpA lipoprotein family
C3F34_00395	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3F34_00400	COG2011	ABC-type metal ion transport system permease component
C3F34_00405	COG0012	GTP binding
C3F34_00430	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
C3F34_00440	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
C3F34_00465	COG2207	Transcriptional regulator
C3F34_00465	COG1917	Cupin 2, conserved barrel domain protein
C3F34_00470	COG0386	Belongs to the glutathione peroxidase family
C3F34_00475	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3F34_00480	COG0436	Aminotransferase
C3F34_00520	COG0612	Peptidase, M16
C3F34_00525	COG0384	phenazine biosynthesis protein PhzF
C3F34_00535	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_00560	COG0753	catalase activity
C3F34_00610	COG0556	nucleotide-excision repair
C3F34_00625	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3F34_00640	COG2050	protein possibly involved in aromatic compounds catabolism
C3F34_00645	COG2351	hydroxyisourate hydrolase activity
C3F34_00655	COG1686	Belongs to the peptidase S11 family
C3F34_00670	COG0415	Belongs to the DNA photolyase family
C3F34_00695	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
C3F34_00705	COG0693	protein deglycase activity
C3F34_00710	COG1960	acyl-CoA dehydrogenase activity
C3F34_00715	COG1301	dicarboxylic acid transport
C3F34_00725	COG3139	Protein of unknown function (DUF1315)
C3F34_00730	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C3F34_00735	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3F34_00755	COG0642	Histidine kinase
C3F34_00760	COG0745	RESPONSE REGULATOR receiver
C3F34_00780	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3F34_00790	COG2199	diguanylate cyclase activity
C3F34_00790	COG2203	Gaf domain
C3F34_00795	COG1720	tRNA m6t6A37 methyltransferase activity
C3F34_00830	COG0789	Transcriptional regulator
C3F34_00840	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3F34_00845	COG3634	alkyl hydroperoxide reductase activity
C3F34_00875	COG1643	Atp-dependent helicase
C3F34_00880	COG0450	alkyl hydroperoxide reductase
C3F34_00925	COG0564	pseudouridine synthase activity
C3F34_00940	COG0352	thiamine-phosphate diphosphorylase activity
C3F34_00945	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3F34_00975	COG0402	S-adenosylhomocysteine deaminase activity
C3F34_00980	COG2885	chlorophyll binding
C3F34_00980	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
C3F34_00990	COG2985	domain, Protein
C3F34_01010	COG2814	Major facilitator Superfamily
C3F34_01015	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3F34_01055	COG1136	(ABC) transporter
C3F34_01060	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
C3F34_01065	COG3038	cytochrome b561
C3F34_01070	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3F34_01090	COG2816	NAD+ diphosphatase activity
C3F34_01110	COG1131	(ABC) transporter
C3F34_01115	COG0842	Transport permease protein
C3F34_01130	COG0772	Belongs to the SEDS family
C3F34_01135	COG2951	lytic endotransglycosylase activity
C3F34_01145	COG1574	metal-dependent hydrolase with the TIM-barrel fold
C3F34_01190	COG0052	Belongs to the universal ribosomal protein uS2 family
C3F34_01195	COG0024	Methionine aminopeptidase
C3F34_01205	COG2223	nitrite transmembrane transporter activity
C3F34_01215	COG2175	clavaminate synthase activity
C3F34_01220	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3F34_01225	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C3F34_01245	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_01250	COG2610	gluconate transmembrane transporter activity
C3F34_01255	COG0583	DNA-binding transcription factor activity
C3F34_01265	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3F34_01285	COG0047	phosphoribosylformylglycinamidine synthase activity
C3F34_01285	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
C3F34_01300	COG2255	four-way junction helicase activity
C3F34_01455	COG4695	Portal protein
C3F34_01460	COG1802	Transcriptional regulator
C3F34_01460	COG4626	Terminase
C3F34_01645	COG0824	Thioesterase
C3F34_01665	COG0823	Involved in the tonB-independent uptake of proteins
C3F34_01685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3F34_01730	COG0628	permease
C3F34_01740	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C3F34_01760	COG2333	competence protein COMEC
C3F34_01760	COG0658	competence protein
C3F34_01765	COG1136	(ABC) transporter
C3F34_01770	COG4591	ABC-type transport system involved in lipoprotein release permease component
C3F34_01785	COG1671	Belongs to the UPF0178 family
C3F34_01805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_01825	COG1301	dicarboxylic acid transport
C3F34_01850	COG1280	lysine exporter protein (LysE YggA)
C3F34_01855	COG1522	sequence-specific DNA binding
C3F34_01870	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
C3F34_01885	COG0019	diaminopimelate decarboxylase activity
C3F34_01895	COG1113	amino acid transport
C3F34_01900	COG1115	amino acid carrier protein
C3F34_01925	COG0175	sulfate reduction
C3F34_01940	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
C3F34_01965	COG0697	spore germination
C3F34_01990	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C3F34_02005	COG1802	Transcriptional regulator
C3F34_02010	COG2217	Heavy metal translocating P-type atpase
C3F34_02020	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
C3F34_02035	COG2234	aminopeptidase activity
C3F34_02045	COG3384	dioxygenase
C3F34_02055	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3F34_02060	COG2878	Part of a membrane complex involved in electron transport
C3F34_02105	COG0742	ribosomal rna small subunit methyltransferase
C3F34_02135	COG0583	DNA-binding transcription factor activity
C3F34_02140	COG2814	Major facilitator Superfamily
C3F34_02145	COG1309	transcriptional regulator
C3F34_02150	COG1607	acyl-coa hydrolase
C3F34_02155	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3F34_02160	COG1115	amino acid carrier protein
C3F34_02165	COG0786	glutamate:sodium symporter activity
C3F34_02180	COG2321	neutral zinc metallopeptidase
C3F34_02185	COG2354	Protein conserved in bacteria
C3F34_02195	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3F34_02200	COG2268	Band 7 protein
C3F34_02220	COG3733	amine oxidase
C3F34_02230	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3F34_02240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3F34_02255	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3F34_02260	COG1053	succinate dehydrogenase
C3F34_02265	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
C3F34_02270	COG2009	succinate dehydrogenase
C3F34_02280	COG2072	flavoprotein involved in K transport
C3F34_02285	COG0300	oxidoreductase activity
C3F34_02300	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3F34_02300	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
C3F34_02320	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3F34_02345	COG0564	pseudouridine synthase activity
C3F34_02370	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
C3F34_02400	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C3F34_02420	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3F34_02450	COG0586	Pfam SNARE associated Golgi protein
C3F34_02460	COG0583	DNA-binding transcription factor activity
C3F34_02480	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3F34_02485	COG2921	Belongs to the UPF0250 family
C3F34_02490	COG0321	lipoyl(octanoyl) transferase activity
C3F34_02505	COG0531	amino acid
C3F34_02515	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_02525	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
C3F34_02530	COG1648	precorrin-2 dehydrogenase activity
C3F34_02530	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3F34_02535	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
C3F34_02545	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
C3F34_02555	COG0211	Belongs to the bacterial ribosomal protein bL27 family
C3F34_02575	COG0671	phosphoesterase, PA-phosphatase related
C3F34_02580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_02590	COG1538	Outer membrane efflux protein
C3F34_02595	COG0393	Putative heavy-metal-binding
C3F34_02610	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_02620	COG0525	valine-tRNA ligase activity
C3F34_02665	COG0765	amino acid transport
C3F34_02670	COG0765	amino acid transport
C3F34_02675	COG1126	abc transporter atp-binding protein
C3F34_02680	COG0004	ammonium transporteR
C3F34_02685	COG1011	Hydrolase
C3F34_02695	COG0642	Histidine kinase
C3F34_02700	COG0745	RESPONSE REGULATOR receiver
C3F34_02705	COG2194	sulfuric ester hydrolase activity
C3F34_02720	COG2814	Major facilitator Superfamily
C3F34_02730	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3F34_02750	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3F34_02755	COG0142	geranyltranstransferase activity
C3F34_02760	COG2199	diguanylate cyclase activity
C3F34_02765	COG2828	Protein conserved in bacteria
C3F34_02770	COG1113	amino acid transport
C3F34_02790	COG0745	RESPONSE REGULATOR receiver
C3F34_02795	COG2205	protein histidine kinase activity
C3F34_02800	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
C3F34_02805	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
C3F34_02810	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
C3F34_02830	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
C3F34_02840	COG4716	Myosin-crossreactive antigen
C3F34_02865	COG2515	1-aminocyclopropane-1-carboxylate deaminase
C3F34_02870	COG2081	HI0933 family
C3F34_02875	COG0668	transmembrane transport
C3F34_02885	COG4303	Ethanolamine ammonia lyase large subunit
C3F34_02890	COG0531	amino acid
C3F34_02905	COG0583	DNA-binding transcription factor activity
C3F34_02910	COG1278	Cold shock
C3F34_02930	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3F34_02935	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3F34_02940	COG0713	ATP synthesis coupled electron transport
C3F34_02950	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3F34_02965	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
C3F34_02975	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3F34_02975	COG0649	NAD binding
C3F34_02995	COG2205	protein histidine kinase activity
C3F34_03000	COG0745	RESPONSE REGULATOR receiver
C3F34_03015	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3F34_03030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_03035	COG2274	protein secretion by the type I secretion system
C3F34_03050	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_03060	COG0333	Belongs to the bacterial ribosomal protein bL32 family
C3F34_03065	COG1399	metal-binding, possibly nucleic acid-binding protein
C3F34_03070	COG3101	peptidyl-lysine hydroxylation
C3F34_03075	COG0009	L-threonylcarbamoyladenylate synthase
C3F34_03080	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
C3F34_03085	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
C3F34_03100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3F34_03110	COG0339	signal peptide processing
C3F34_03120	COG4166	transmembrane transport
C3F34_03160	COG2226	methyltransferase
C3F34_03170	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
C3F34_03170	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3F34_03175	COG0596	Alpha beta hydrolase
C3F34_03175	COG2226	methyltransferase
C3F34_03175	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3F34_03180	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3F34_03195	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3F34_03200	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C3F34_03210	COG1196	nuclear chromosome segregation
C3F34_03220	COG0730	response to heat
C3F34_03240	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C3F34_03265	COG0789	Transcriptional regulator
C3F34_03275	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3F34_03285	COG3422	double-strand break repair
C3F34_03295	COG2824	Alkylphosphonate utilization operon protein PhnA
C3F34_03305	COG3189	MarR family transcriptional regulator
C3F34_03325	COG0564	pseudouridine synthase activity
C3F34_03360	COG0354	folic acid binding
C3F34_03385	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3F34_03390	COG1530	ribonuclease E activity
C3F34_03395	COG0424	maF-like protein
C3F34_03400	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
C3F34_03405	COG1792	Involved in formation and maintenance of cell shape
C3F34_03410	COG1077	Cell shape determining protein MreB Mrl
C3F34_03415	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C3F34_03425	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
C3F34_03445	COG0583	DNA-binding transcription factor activity
C3F34_03480	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
C3F34_03495	COG0679	Auxin Efflux Carrier
C3F34_03500	COG1902	pentaerythritol trinitrate reductase activity
C3F34_03520	COG1970	mechanosensitive ion channel activity
C3F34_03530	COG2233	PERMEase
C3F34_03535	COG2813	Specifically methylates the guanine in position
C3F34_03540	COG0833	amino acid
C3F34_03560	COG2885	chlorophyll binding
C3F34_03560	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
C3F34_03570	COG0183	Belongs to the thiolase family
C3F34_03590	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_03610	COG2207	Transcriptional regulator
C3F34_03625	COG0183	Belongs to the thiolase family
C3F34_03655	COG1272	protein, Hemolysin III
C3F34_03660	COG0477	Major facilitator Superfamily
C3F34_03665	COG1408	metallophosphoesterase
C3F34_03670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3F34_03680	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3F34_03705	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3F34_03710	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C3F34_03720	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
C3F34_03725	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C3F34_03730	COG0625	glutathione transferase activity
C3F34_03735	COG2969	positive regulation of protein catabolic process
C3F34_03795	COG2199	diguanylate cyclase activity
C3F34_03825	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
C3F34_03830	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
C3F34_03845	COG0450	alkyl hydroperoxide reductase
C3F34_03865	COG0285	dihydrofolate synthase activity
C3F34_03870	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
C3F34_03905	COG0133	tryptophan synthase activity
C3F34_03915	COG4206	TonB-dependent receptor
C3F34_03920	COG2096	Adenosyltransferase
C3F34_03945	COG2315	Protein conserved in bacteria
C3F34_03950	COG1113	amino acid transport
C3F34_03955	COG0745	RESPONSE REGULATOR receiver
C3F34_03960	COG2205	protein histidine kinase activity
C3F34_03970	COG1960	acyl-CoA dehydrogenase activity
C3F34_03975	COG1960	acyl-CoA dehydrogenase activity
C3F34_03980	COG3223	Belongs to the PsiE family
C3F34_04010	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
C3F34_04045	COG1091	dTDP-4-dehydrorhamnose reductase activity
C3F34_04065	COG0726	polysaccharide deacetylase
C3F34_04080	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
C3F34_04085	COG5002	protein histidine kinase activity
C3F34_04090	COG3706	GGDEF domain
C3F34_04090	COG0745	RESPONSE REGULATOR receiver
C3F34_04100	COG0793	Belongs to the peptidase S41A family
C3F34_04130	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C3F34_04135	COG0280	phosphate acetyltransferase
C3F34_04135	COG0857	belongs to the CobB CobQ family
C3F34_04145	COG2226	methyltransferase
C3F34_04150	COG0697	spore germination
C3F34_04160	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
C3F34_04160	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
C3F34_04180	COG0740	serine-type endopeptidase activity
C3F34_04190	COG4771	TonB-dependent receptor
C3F34_04195	COG4774	siderophore transport
C3F34_04205	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3F34_04215	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3F34_04215	COG2813	Specifically methylates the guanine in position
C3F34_04325	COG0788	formyltetrahydrofolate deformylase activity
C3F34_04340	COG0227	Belongs to the bacterial ribosomal protein bL28 family
C3F34_04345	COG0267	Belongs to the bacterial ribosomal protein bL33 family
C3F34_04350	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3F34_04350	COG4651	solute:proton antiporter activity
C3F34_04370	COG0724	RNA recognition motif
C3F34_04380	COG1929	Belongs to the glycerate kinase type-1 family
C3F34_04415	COG2900	Belongs to the SlyX family
C3F34_04435	COG1560	Kdo2-lipid A biosynthetic process
C3F34_04470	COG0252	asparaginase activity
C3F34_04495	COG0473	3-isopropylmalate dehydrogenase activity
C3F34_04555	COG1846	Transcriptional regulator
C3F34_04565	COG1960	acyl-CoA dehydrogenase activity
C3F34_04575	COG1280	lysine exporter protein (LysE YggA)
C3F34_04585	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
C3F34_04590	COG3011	Protein conserved in bacteria
C3F34_04605	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3F34_04610	COG3384	dioxygenase
C3F34_04615	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_04625	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
C3F34_04630	COG4638	Rieske (2fe-2S)
C3F34_04635	COG0583	DNA-binding transcription factor activity
C3F34_04660	COG4569	acetaldehyde dehydrogenase (acetylating) activity
C3F34_04665	COG3971	2-oxopent-4-enoate hydratase activity
C3F34_04675	COG0625	glutathione transferase activity
C3F34_04680	COG2378	regulation of single-species biofilm formation
C3F34_04685	COG0546	phosphoglycolate phosphatase activity
C3F34_04700	COG1530	ribonuclease E activity
C3F34_04705	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_04730	COG1983	PspC domain protein
C3F34_04750	COG0751	glycine-tRNA ligase activity
C3F34_04775	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3F34_04800	COG0493	'glutamate synthase
C3F34_04820	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
C3F34_04835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3F34_04850	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
C3F34_04860	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
C3F34_04860	COG0644	oxidoreductase
C3F34_04875	COG4535	Mg2 and Co2 transporter CorC
C3F34_04880	COG0815	Transfers the fatty acyl group on membrane lipoproteins
C3F34_04900	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3F34_04910	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
C3F34_04920	COG0484	heat shock protein binding
C3F34_04925	COG0789	Transcriptional regulator
C3F34_04930	COG2841	Protein conserved in bacteria
C3F34_04935	COG0598	Magnesium transport protein CorA
C3F34_04945	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
C3F34_04950	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3F34_04955	COG1074	ATP-dependent DNA helicase activity
C3F34_04960	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
C3F34_04990	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3F34_05000	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
C3F34_05020	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3F34_05020	COG2111	Na H antiporter
C3F34_05025	COG1006	Multisubunit Na H antiporter MnhC subunit
C3F34_05030	COG0651	ATP synthesis coupled electron transport
C3F34_05040	COG2212	antiporter activity
C3F34_05050	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
C3F34_05055	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
C3F34_05060	COG0195	Participates in both transcription termination and antitermination
C3F34_05065	COG0779	Required for maturation of 30S ribosomal subunits
C3F34_05115	COG0237	dephospho-CoA kinase activity
C3F34_05125	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3F34_05130	COG3123	guanosine phosphorylase activity
C3F34_05135	COG0497	DNA recombination
C3F34_05145	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
C3F34_05160	COG1289	transmembrane transporter activity
C3F34_05170	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3F34_05185	COG1733	regulation of RNA biosynthetic process
C3F34_05240	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
C3F34_05270	COG0326	Molecular chaperone. Has ATPase activity
C3F34_05285	COG2056	Na+-H+ antiporter family
C3F34_05330	COG0081	regulation of translation
C3F34_05355	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3F34_05385	COG0546	phosphoglycolate phosphatase activity
C3F34_05390	COG1716	ATPase activity
C3F34_05415	COG0824	Thioesterase
C3F34_05435	COG0181	hydroxymethylbilane synthase activity
C3F34_05445	COG3275	phosphorelay sensor kinase activity
C3F34_05465	COG1538	Outer membrane efflux protein
C3F34_05480	COG0494	nUDIX hydrolase
C3F34_05490	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3F34_05495	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3F34_05500	COG0772	Belongs to the SEDS family
C3F34_05525	COG4974	Belongs to the 'phage' integrase family
C3F34_05530	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3F34_05540	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
C3F34_05555	COG1686	Belongs to the peptidase S11 family
C3F34_05560	COG2197	response regulator
C3F34_05565	COG3852	Histidine kinase
C3F34_05575	COG0793	Belongs to the peptidase S41A family
C3F34_05580	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
C3F34_05585	COG0795	lipopolysaccharide-transporting ATPase activity
C3F34_05590	COG0795	lipopolysaccharide-transporting ATPase activity
C3F34_05615	COG0586	Pfam SNARE associated Golgi protein
C3F34_05630	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3F34_05630	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3F34_05640	COG0004	ammonium transporteR
C3F34_05645	COG0347	Belongs to the P(II) protein family
C3F34_05655	COG0606	chelatase, subunit chli
C3F34_05670	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
C3F34_05685	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_05695	COG0477	Major facilitator Superfamily
C3F34_05700	COG2860	membrane
C3F34_05710	COG1253	flavin adenine dinucleotide binding
C3F34_05725	COG0477	Major facilitator Superfamily
C3F34_05735	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
C3F34_05755	COG2814	Major facilitator Superfamily
C3F34_05810	COG1652	LysM domain
C3F34_05815	COG0758	DNA mediated transformation
C3F34_05825	COG0697	spore germination
C3F34_05835	COG0386	Belongs to the glutathione peroxidase family
C3F34_05865	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
C3F34_05875	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
C3F34_05915	COG1121	(ABC) transporter
C3F34_05920	COG1108	ABC-type Mn2 Zn2 transport systems permease components
C3F34_05930	COG2837	iron assimilation
C3F34_05960	COG3501	Rhs element vgr protein
C3F34_05965	COG0281	malic enzyme
C3F34_06000	COG3706	GGDEF domain
C3F34_06000	COG0745	RESPONSE REGULATOR receiver
C3F34_06020	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C3F34_06020	COG0519	Catalyzes the synthesis of GMP from XMP
C3F34_06025	COG2259	Doxx family
C3F34_06030	COG0586	Pfam SNARE associated Golgi protein
C3F34_06045	COG1192	Involved in chromosome partitioning
C3F34_06055	COG0271	Belongs to the BolA IbaG family
C3F34_06090	COG3756	Protein conserved in bacteria
C3F34_06120	COG1283	sodium-dependent phosphate transmembrane transporter activity
C3F34_06125	COG0842	Transport permease protein
C3F34_06130	COG0842	Transport permease protein
C3F34_06130	COG1129	ABC transporter
C3F34_06135	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_06230	COG1113	amino acid transport
C3F34_06240	COG3724	N-succinylarginine dihydrolase activity
C3F34_06245	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_06260	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3F34_06275	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
C3F34_06280	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3F34_06290	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C3F34_06300	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
C3F34_06330	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3F34_06335	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3F34_06340	COG0166	Belongs to the GPI family
C3F34_06350	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3F34_06355	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C3F34_06360	COG1216	Glycosyl transferase, family 2
C3F34_06380	COG2244	polysaccharide biosynthetic process
C3F34_06385	COG2089	acid synthase
C3F34_06400	COG1083	cytidylyl-transferase
C3F34_06405	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3F34_06410	COG1086	Polysaccharide biosynthesis protein
C3F34_06415	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C3F34_06445	COG0728	peptidoglycan biosynthetic process
C3F34_06465	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
C3F34_06480	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3F34_06485	COG0546	phosphoglycolate phosphatase activity
C3F34_06490	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_06505	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3F34_06505	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C3F34_06510	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3F34_06515	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3F34_06520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3F34_06525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3F34_06530	COG1116	anion transmembrane transporter activity
C3F34_06535	COG1309	transcriptional regulator
C3F34_06540	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C3F34_06560	COG0196	riboflavin kinase activity
C3F34_06565	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
C3F34_06575	COG1047	Peptidyl-prolyl cis-trans
C3F34_06595	COG0129	dihydroxy-acid dehydratase activity
C3F34_06610	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3F34_06610	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3F34_06615	COG0428	transporter
C3F34_06625	COG0733	neurotransmitter:sodium symporter activity
C3F34_06680	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3F34_06700	COG0583	DNA-binding transcription factor activity
C3F34_06725	COG2951	lytic endotransglycosylase activity
C3F34_06745	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3F34_06760	COG0861	Integral membrane protein TerC family
C3F34_06765	COG0402	S-adenosylhomocysteine deaminase activity
C3F34_06780	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3F34_06785	COG1230	cation diffusion facilitator family transporter
C3F34_06800	COG2226	methyltransferase
C3F34_06810	COG0706	membrane insertase activity
C3F34_06815	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
C3F34_06820	COG0594	ribonuclease P activity
C3F34_06825	COG0230	Belongs to the bacterial ribosomal protein bL34 family
C3F34_06830	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
C3F34_06845	COG0187	DNA topoisomerase II activity
C3F34_06855	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C3F34_06860	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
C3F34_06885	COG0488	(ABC) transporter
C3F34_06915	COG2814	Major facilitator Superfamily
C3F34_06920	COG2133	pyrroloquinoline quinone binding
C3F34_06935	COG2233	PERMEase
C3F34_06950	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_06975	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
C3F34_06985	COG2814	Major facilitator Superfamily
C3F34_06990	COG0656	L-ascorbic acid biosynthetic process
C3F34_06995	COG0583	DNA-binding transcription factor activity
C3F34_07005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_07010	COG1064	alcohol dehydrogenase
C3F34_07015	COG2818	Glycosylase
C3F34_07030	COG1194	a g-specific adenine glycosylase
C3F34_07045	COG5487	UPF0391 membrane protein
C3F34_07050	COG2983	Belongs to the UPF0260 family
C3F34_07055	COG2819	hydrolase of the alpha beta superfamily
C3F34_07060	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C3F34_07070	COG4160	amino acid transport
C3F34_07075	COG4215	(ABC) transporter
C3F34_07090	COG1522	sequence-specific DNA binding
C3F34_07095	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
C3F34_07105	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3F34_07115	COG1335	isochorismatase
C3F34_07120	COG0385	Bile acid
C3F34_07135	COG3830	Belongs to the UPF0237 family
C3F34_07135	COG0560	Phosphoserine phosphatase
C3F34_07200	COG0534	Mate efflux family protein
C3F34_07205	COG0436	Aminotransferase
C3F34_07210	COG2733	membrane
C3F34_07225	COG2918	glutathione biosynthetic process
C3F34_07230	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
C3F34_07240	COG3150	esterase
C3F34_07260	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3F34_07275	COG0410	ABC transporter
C3F34_07320	COG3706	GGDEF domain
C3F34_07325	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
C3F34_07345	COG0708	Exodeoxyribonuclease III
C3F34_07355	COG0583	DNA-binding transcription factor activity
C3F34_07360	COG1335	isochorismatase
C3F34_07390	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3F34_07400	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
C3F34_07435	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3F34_07445	COG2119	membrane
C3F34_07450	COG0426	domain, Protein
C3F34_07450	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_07470	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C3F34_07495	COG1902	pentaerythritol trinitrate reductase activity
C3F34_07500	COG1519	Transferase
C3F34_07505	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3F34_07510	COG0668	transmembrane transport
C3F34_07520	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3F34_07535	COG0431	NADPH-dependent FMN reductase
C3F34_07550	COG0784	Response regulator, receiver
C3F34_07550	COG2198	Histidine kinase
C3F34_07550	COG2205	protein histidine kinase activity
C3F34_07555	COG3162	membrane
C3F34_07570	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3F34_07600	COG3706	GGDEF domain
C3F34_07635	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3F34_07640	COG1309	transcriptional regulator
C3F34_07645	COG1063	alcohol dehydrogenase
C3F34_07660	COG0300	oxidoreductase activity
C3F34_07665	COG0789	Transcriptional regulator
C3F34_07670	COG0352	thiamine-phosphate diphosphorylase activity
C3F34_07670	COG0351	phosphomethylpyrimidine kinase
C3F34_07670	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
C3F34_07680	COG2814	Major facilitator Superfamily
C3F34_07685	COG0629	single-stranded DNA binding
C3F34_07690	COG1113	amino acid transport
C3F34_07700	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3F34_07705	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_07710	COG0450	alkyl hydroperoxide reductase
C3F34_07720	COG1335	isochorismatase
C3F34_07750	COG2814	Major facilitator Superfamily
C3F34_07755	COG0583	DNA-binding transcription factor activity
C3F34_07780	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3F34_07785	COG1960	acyl-CoA dehydrogenase activity
C3F34_07790	COG1024	Enoyl-CoA hydratase
C3F34_07815	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3F34_07870	COG0582	viral genome integration into host DNA
C3F34_07900	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
C3F34_07920	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
C3F34_07940	COG0531	amino acid
C3F34_07945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3F34_07965	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
C3F34_07970	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
C3F34_08005	COG0427	acetyl-CoA hydrolase
C3F34_08010	COG2205	protein histidine kinase activity
C3F34_08015	COG0745	RESPONSE REGULATOR receiver
C3F34_08030	COG4221	oxidoreductase activity
C3F34_08040	COG0488	(ABC) transporter
C3F34_08105	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
C3F34_08110	COG0275	rRNA processing
C3F34_08125	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3F34_08130	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
C3F34_08140	COG2226	methyltransferase
C3F34_08190	COG0067	glutamate synthase
C3F34_08190	COG0069	glutamate synthase activity
C3F34_08190	COG0070	glutamate synthase
C3F34_08195	COG0493	'glutamate synthase
C3F34_08205	COG1704	LemA family
C3F34_08210	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
C3F34_08220	COG4969	Belongs to the N-Me-Phe pilin family
C3F34_08225	COG4969	Belongs to the N-Me-Phe pilin family
C3F34_08230	COG3307	-O-antigen
C3F34_08235	COG3307	-O-antigen
C3F34_08245	COG2906	2 iron, 2 sulfur cluster binding
C3F34_08255	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3F34_08260	COG1758	RNA polymerase activity
C3F34_08265	COG0194	GDP metabolic process
C3F34_08310	COG0228	four-way junction DNA binding
C3F34_08315	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
C3F34_08325	COG0335	large ribosomal subunit rRNA binding
C3F34_08335	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
C3F34_08340	COG5380	lipid catabolic process
C3F34_08345	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
C3F34_08365	COG5006	permease, DMT superfamily
C3F34_08370	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3F34_08375	COG0277	FAD linked oxidase domain protein
C3F34_08385	COG2197	response regulator
C3F34_08395	COG0477	Major facilitator Superfamily
C3F34_08405	COG2814	Major facilitator Superfamily
C3F34_08410	COG1289	transmembrane transporter activity
C3F34_08415	COG2032	superoxide dismutase activity
C3F34_08420	COG0628	permease
C3F34_08425	COG1192	Involved in chromosome partitioning
C3F34_08435	COG2226	methyltransferase
C3F34_08450	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
C3F34_08455	COG0254	rRNA binding
C3F34_08460	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3F34_08465	COG0534	Mate efflux family protein
C3F34_08475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3F34_08495	COG1960	acyl-CoA dehydrogenase activity
C3F34_08520	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3F34_08540	COG0513	Belongs to the DEAD box helicase family
C3F34_08545	COG1127	ABC transporter
C3F34_08550	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C3F34_08555	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3F34_08570	COG0598	Magnesium transport protein CorA
C3F34_08585	COG1040	competence protein
C3F34_08590	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C3F34_08610	COG2267	carboxylic ester hydrolase activity
C3F34_08615	COG2937	Belongs to the GPAT DAPAT family
C3F34_08620	COG1946	Acyl-CoA thioesterase
C3F34_08625	COG1301	dicarboxylic acid transport
C3F34_08645	COG1959	2 iron, 2 sulfur cluster binding
C3F34_08650	COG1017	nitric oxide dioxygenase activity
C3F34_08650	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3F34_08655	COG0433	COG0433 Predicted ATPase
C3F34_08660	COG0626	cystathionine gamma-synthase activity
C3F34_08680	COG0088	Forms part of the polypeptide exit tunnel
C3F34_08685	COG0089	rRNA binding
C3F34_08695	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
C3F34_08735	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
C3F34_08745	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
C3F34_08750	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C3F34_08760	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
C3F34_08780	COG0257	Belongs to the bacterial ribosomal protein bL36 family
C3F34_08785	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
C3F34_08790	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
C3F34_08795	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
C3F34_08805	COG0203	ribosomal protein L17
C3F34_08810	COG2072	flavoprotein involved in K transport
C3F34_08815	COG1960	acyl-CoA dehydrogenase activity
C3F34_08820	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
C3F34_08845	COG0697	spore germination
C3F34_08860	COG0339	signal peptide processing
C3F34_08870	COG0557	exoribonuclease II activity
C3F34_08905	COG0179	Fumarylacetoacetate (FAA) hydrolase
C3F34_08935	COG1295	ribonuclease BN
C3F34_08955	COG3706	GGDEF domain
C3F34_08985	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
C3F34_08990	COG1702	phosphate starvation-inducible protein PhoH
C3F34_09000	COG0739	heme binding
C3F34_09000	COG0741	lytic transglycosylase activity
C3F34_09000	COG1196	nuclear chromosome segregation
C3F34_09035	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
C3F34_09040	COG1183	phosphatidylcholine synthase activity
C3F34_09095	COG3453	Protein conserved in bacteria
C3F34_09095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3F34_09110	COG1607	acyl-coa hydrolase
C3F34_09120	COG1666	GTP binding
C3F34_09140	COG2350	Protein conserved in bacteria
C3F34_09155	COG0625	glutathione transferase activity
C3F34_09160	COG3781	membrane
C3F34_09165	COG2003	Belongs to the UPF0758 family
C3F34_09170	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3F34_09175	COG3783	Cytochrome b(562)
C3F34_09205	COG1162	GTPase activity
C3F34_09210	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
C3F34_09225	COG1538	Outer membrane efflux protein
C3F34_09230	COG0577	efflux transmembrane transporter activity
C3F34_09230	COG1136	(ABC) transporter
C3F34_09235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_09260	COG0028	Belongs to the TPP enzyme family
C3F34_09265	COG0440	acetolactate synthase activity
C3F34_09305	COG2975	iron-sulfur cluster assembly
C3F34_09345	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3F34_09370	COG1862	Preprotein translocase
C3F34_09385	COG1704	LemA family
C3F34_09395	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
C3F34_09460	COG1113	amino acid transport
C3F34_09470	COG0625	glutathione transferase activity
C3F34_09490	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3F34_09495	COG1522	sequence-specific DNA binding
C3F34_09500	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
C3F34_09515	COG0084	hydrolase, TatD family'
C3F34_09530	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C3F34_09540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3F34_09550	COG0641	radical SAM
C3F34_09555	COG3119	arylsulfatase activity
C3F34_09565	COG2814	Major facilitator Superfamily
C3F34_09575	COG0789	Transcriptional regulator
C3F34_09580	COG0697	spore germination
C3F34_09590	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
C3F34_09595	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
C3F34_09600	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
C3F34_09620	COG0004	ammonium transporteR
C3F34_09635	COG3622	Belongs to the hyi family
C3F34_09640	COG2084	Dehydrogenase
C3F34_09645	COG1024	Enoyl-CoA hydratase
C3F34_09650	COG5002	protein histidine kinase activity
C3F34_09650	COG2205	protein histidine kinase activity
C3F34_09650	COG0784	Response regulator, receiver
C3F34_09655	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3F34_09670	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3F34_09675	COG3956	TIGRFAM MazG family protein
C3F34_09680	COG1555	photosystem II stabilization
C3F34_09685	COG0617	tRNA 3'-terminal CCA addition
C3F34_09690	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
C3F34_09705	COG1660	Displays ATPase and GTPase activities
C3F34_09715	COG3028	Belongs to the UPF0307 family
C3F34_09720	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_09735	COG0625	glutathione transferase activity
C3F34_09755	COG1238	metal cluster binding
C3F34_09775	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
C3F34_09790	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
C3F34_09795	COG0072	phenylalanine-tRNA ligase activity
C3F34_09820	COG0248	Ppx GppA phosphatase
C3F34_09830	COG0037	tRNA processing
C3F34_09845	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3F34_09845	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3F34_09875	COG1764	response to oxidative stress
C3F34_09880	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3F34_09945	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
C3F34_09955	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
C3F34_10025	COG1214	PFAM Peptidase M22, glycoprotease
C3F34_10030	COG1968	undecaprenyl-diphosphatase activity
C3F34_10045	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
C3F34_10055	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3F34_10065	COG2132	Multicopper oxidase
C3F34_10085	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3F34_10095	COG0351	phosphomethylpyrimidine kinase
C3F34_10095	COG0352	thiamine-phosphate diphosphorylase activity
C3F34_10095	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
C3F34_10110	COG1522	sequence-specific DNA binding
C3F34_10125	COG0251	oxidation-reduction process
C3F34_10130	COG1113	amino acid transport
C3F34_10155	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
C3F34_10165	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C3F34_10170	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3F34_10180	COG0456	acetyltransferase
C3F34_10190	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
C3F34_10195	COG0492	ferredoxin-NADP+ reductase activity
C3F34_10200	COG1674	ftsk spoiiie
C3F34_10220	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
C3F34_10225	COG2894	cell division
C3F34_10230	COG0850	regulation of cytokinetic process
C3F34_10240	COG0204	Acyl-transferase
C3F34_10245	COG2885	chlorophyll binding
C3F34_10250	COG0210	DNA helicase
C3F34_10255	COG0756	dUTP diphosphatase activity
C3F34_10260	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3F34_10265	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3F34_10275	COG0121	glutamine amidotransferase
C3F34_10290	COG2914	Belongs to the UPF0125 (RnfH) family
C3F34_10295	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3F34_10300	COG0735	belongs to the Fur family
C3F34_10310	COG0420	3'-5' exonuclease activity
C3F34_10325	COG1090	epimerase
C3F34_10340	COG2050	protein possibly involved in aromatic compounds catabolism
C3F34_10350	COG2814	Major facilitator Superfamily
C3F34_10355	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
C3F34_10365	COG0582	viral genome integration into host DNA
C3F34_10375	COG0629	single-stranded DNA binding
C3F34_10535	COG4416	COG NOG18757 non supervised orthologous group
C3F34_10590	COG4695	Portal protein
C3F34_10595	COG0582	viral genome integration into host DNA
C3F34_10645	COG0583	DNA-binding transcription factor activity
C3F34_10665	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_10810	COG4264	IucA IucC family
C3F34_10825	COG4264	IucA IucC family
C3F34_10830	COG4264	IucA IucC family
C3F34_10890	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
C3F34_10900	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
C3F34_10905	COG0642	Histidine kinase
C3F34_10910	COG0745	RESPONSE REGULATOR receiver
C3F34_10935	COG3046	protein related to deoxyribodipyrimidine photolyase
C3F34_10945	COG0583	DNA-binding transcription factor activity
C3F34_10960	COG1414	Transcriptional regulator
C3F34_10965	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3F34_10985	COG2814	Major facilitator Superfamily
C3F34_10990	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_10990	COG2030	dehydratase
C3F34_10995	COG3396	Phenylacetate-CoA oxygenase
C3F34_11000	COG3460	Phenylacetate-CoA oxygenase
C3F34_11005	COG3396	Phenylacetate-CoA oxygenase
C3F34_11010	COG2151	metal-sulfur cluster biosynthetic enzyme
C3F34_11015	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3F34_11020	COG1024	Enoyl-CoA hydratase
C3F34_11025	COG1024	Enoyl-CoA hydratase
C3F34_11030	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3F34_11035	COG0183	Belongs to the thiolase family
C3F34_11040	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
C3F34_11045	COG3327	negative regulation of DNA-templated transcription, initiation
C3F34_11065	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3F34_11065	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3F34_11075	COG0489	protein tyrosine kinase activity
C3F34_11115	COG0442	prolyl-tRNA aminoacylation
C3F34_11125	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3F34_11150	COG0840	transmembrane signaling receptor activity
C3F34_11165	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3F34_11180	COG2832	Protein of unknown function (DUF454)
C3F34_11240	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
C3F34_11250	COG1289	transmembrane transporter activity
C3F34_11255	COG2814	Major facilitator Superfamily
C3F34_11280	COG0110	maltose O-acetyltransferase activity
C3F34_11285	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
C3F34_11300	COG0505	Belongs to the CarA family
C3F34_11325	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3F34_11330	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
C3F34_11370	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
C3F34_11385	COG0477	Major facilitator Superfamily
C3F34_11400	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
C3F34_11405	COG1597	lipid kinase activity
C3F34_11410	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C3F34_11430	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3F34_11445	COG1196	nuclear chromosome segregation
C3F34_11445	COG0739	heme binding
C3F34_11445	COG0741	lytic transglycosylase activity
C3F34_11450	COG0037	tRNA processing
C3F34_11460	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
C3F34_11465	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3F34_11525	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
C3F34_11605	COG2831	hemolysin activation secretion protein
C3F34_11610	COG3210	domain, Protein
C3F34_11675	COG0006	proline dipeptidase activity
C3F34_11680	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_11685	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
C3F34_11715	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3F34_11720	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3F34_11760	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3F34_11765	COG0741	lytic transglycosylase activity
C3F34_11765	COG1388	LysM domain
C3F34_11770	COG4166	transmembrane transport
C3F34_11775	COG4174	ABC transporter (Permease)
C3F34_11780	COG4239	(ABC) transporter, permease
C3F34_11785	COG4172	Belongs to the ABC transporter superfamily
C3F34_11795	COG0625	glutathione transferase activity
C3F34_11815	COG0833	amino acid
C3F34_11830	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3F34_11835	COG0418	dihydroorotase activity
C3F34_11845	COG1620	l-lactate permease
C3F34_11850	COG2186	Transcriptional regulator
C3F34_11860	COG0277	FAD linked oxidase domain protein
C3F34_11865	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3F34_11865	COG1902	pentaerythritol trinitrate reductase activity
C3F34_11885	COG1309	transcriptional regulator
C3F34_11900	COG1053	succinate dehydrogenase
C3F34_11905	COG0583	DNA-binding transcription factor activity
C3F34_11925	COG0583	DNA-binding transcription factor activity
C3F34_11940	COG0242	peptide deformylase activity
C3F34_11950	COG2223	nitrite transmembrane transporter activity
C3F34_11970	COG2852	Protein conserved in bacteria
C3F34_11985	COG0306	phosphate transporter
C3F34_11995	COG1215	transferase activity, transferring glycosyl groups
C3F34_12000	COG0726	polysaccharide deacetylase
C3F34_12000	COG1649	PFAM Uncharacterised BCR, COG1649
C3F34_12010	COG0583	DNA-binding transcription factor activity
C3F34_12020	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_12025	COG1773	rubredoxin
C3F34_12030	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
C3F34_12055	COG1741	Belongs to the pirin family
C3F34_12065	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
C3F34_12070	COG3739	integral membrane protein
C3F34_12085	COG1393	Belongs to the ArsC family
C3F34_12090	COG0640	Transcriptional regulator
C3F34_12095	COG0798	PFAM Bile acid sodium symporter
C3F34_12100	COG0431	NADPH-dependent FMN reductase
C3F34_12125	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3F34_12130	COG0512	Glutamine amidotransferase of anthranilate synthase
C3F34_12145	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3F34_12175	COG0523	cobalamin synthesis protein
C3F34_12180	COG4681	YaeQ
C3F34_12200	COG2203	Gaf domain
C3F34_12200	COG2199	diguanylate cyclase activity
C3F34_12270	COG4181	ATPase activity
C3F34_12275	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
C3F34_12280	COG0705	Rhomboid family
C3F34_12280	COG0457	Tetratricopeptide repeat
C3F34_12285	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3F34_12325	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3F34_12330	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3F34_12350	COG1253	flavin adenine dinucleotide binding
C3F34_12385	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
C3F34_12395	COG0281	malic enzyme
C3F34_12395	COG0280	phosphate acetyltransferase
C3F34_12405	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3F34_12410	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
C3F34_12415	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
C3F34_12455	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3F34_12460	COG0778	Nitroreductase
C3F34_12465	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C3F34_12470	COG1056	cytidyltransferase-related domain
C3F34_12470	COG1051	belongs to the nudix hydrolase family
C3F34_12480	COG0583	DNA-binding transcription factor activity
C3F34_12485	COG1279	arginine transmembrane transporter activity
C3F34_12490	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3F34_12505	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
C3F34_12510	COG0602	queuosine metabolic process
C3F34_12530	COG0583	DNA-binding transcription factor activity
C3F34_12535	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C3F34_12540	COG4208	sulfate ABC transporter
C3F34_12555	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
C3F34_12560	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3F34_12565	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C3F34_12585	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3F34_12595	COG0481	GTPase activity
C3F34_12600	COG0681	Belongs to the peptidase S26 family
C3F34_12610	COG0571	ribonuclease III activity
C3F34_12615	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
C3F34_12630	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C3F34_12680	COG2199	diguanylate cyclase activity
C3F34_12695	COG0556	nucleotide-excision repair
C3F34_12725	COG1733	regulation of RNA biosynthetic process
C3F34_12740	COG0671	phosphoesterase, PA-phosphatase related
C3F34_12745	COG4772	TonB-dependent receptor
C3F34_12755	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3F34_12760	COG0076	glutamate decarboxylase activity
C3F34_12765	COG1522	sequence-specific DNA binding
C3F34_12770	COG3961	Belongs to the TPP enzyme family
C3F34_12775	COG1113	amino acid transport
C3F34_12780	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
C3F34_12785	COG0573	inorganic phosphate transmembrane transporter activity
C3F34_12795	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
C3F34_12800	COG0616	signal peptide processing
C3F34_12835	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
C3F34_12840	COG1686	Belongs to the peptidase S11 family
C3F34_12855	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
C3F34_12860	COG4942	peptidase
C3F34_12865	COG0583	DNA-binding transcription factor activity
C3F34_12870	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3F34_12875	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
C3F34_12905	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3F34_12930	COG2986	histidine ammonia-lyase
C3F34_12960	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3F34_12970	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_12975	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3F34_12995	COG2070	2-Nitropropane dioxygenase
C3F34_13030	COG1067	ATP-dependent peptidase activity
C3F34_13070	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
C3F34_13075	COG1966	Carbon starvation protein
C3F34_13080	COG2879	small protein
C3F34_13085	COG0714	Associated with various cellular activities
C3F34_13140	COG5377	YqaJ viral recombinase family
C3F34_13210	COG1484	DNA-dependent DNA replication
C3F34_13370	COG3549	Plasmid maintenance system killer
C3F34_13375	COG3093	addiction module antidote protein HigA
C3F34_13430	COG0582	viral genome integration into host DNA
C3F34_13445	COG4983	Phage plasmid primase, P4 family domain protein
C3F34_13460	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
C3F34_13485	COG1401	restriction endodeoxyribonuclease activity
C3F34_13500	COG2252	PERMEase
C3F34_13505	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
C3F34_13510	COG3038	cytochrome b561
C3F34_13525	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
C3F34_13545	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3F34_13565	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
C3F34_13570	COG1522	sequence-specific DNA binding
C3F34_13580	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
C3F34_13595	COG0667	Aldo Keto reductase
C3F34_13605	COG1765	OsmC-like protein
C3F34_13635	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C3F34_13635	COG0116	Belongs to the methyltransferase superfamily
C3F34_13650	COG0540	Belongs to the ATCase OTCase family
C3F34_13660	COG3047	cAMP biosynthetic process
C3F34_13660	COG2885	chlorophyll binding
C3F34_13680	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C3F34_13685	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C3F34_13685	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3F34_13690	COG1254	Belongs to the acylphosphatase family
C3F34_13740	COG4774	siderophore transport
C3F34_13770	COG0010	Belongs to the arginase family
C3F34_13775	COG0546	phosphoglycolate phosphatase activity
C3F34_13785	COG0174	glutamine synthetase
C3F34_13805	COG1944	ATP diphosphatase activity
C3F34_13810	COG1252	NADH dehydrogenase
C3F34_13820	COG2175	clavaminate synthase activity
C3F34_13825	COG3246	L-lysine catabolic process to acetate
C3F34_13845	COG2855	membrane
C3F34_13870	COG0789	Transcriptional regulator
C3F34_14235	COG0517	IMP dehydrogenase activity
C3F34_14235	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
C3F34_14240	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
C3F34_14250	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
C3F34_14255	COG1137	ATPase activity
C3F34_14285	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
C3F34_14315	COG0583	DNA-binding transcription factor activity
C3F34_14320	COG0477	Major facilitator Superfamily
C3F34_14360	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_14370	COG1294	oxidase, subunit
C3F34_14375	COG1271	oxidase subunit
C3F34_14385	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_14395	COG1346	cytolysis
C3F34_14405	COG3284	Transcriptional regulator
C3F34_14435	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3F34_14440	COG0235	Class ii aldolase
C3F34_14445	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_14455	COG3135	benzoate transporter
C3F34_14480	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_14485	COG2207	Transcriptional regulator
C3F34_14495	COG0412	Dienelactone hydrolase
C3F34_14500	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_14510	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_14525	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3F34_14530	COG0183	Belongs to the thiolase family
C3F34_14535	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3F34_14540	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
C3F34_14550	COG4829	muconolactone delta-isomerase
C3F34_14555	COG4948	Mandelate Racemase Muconate Lactonizing
C3F34_14560	COG0583	DNA-binding transcription factor activity
C3F34_14580	COG0154	amidase activity
C3F34_14600	COG4638	Rieske (2fe-2S)
C3F34_14610	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_14620	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_14625	COG0543	2 iron, 2 sulfur cluster binding
C3F34_14625	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3F34_14630	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
C3F34_14635	COG4638	Rieske (2fe-2S)
C3F34_14650	COG2204	response regulator
C3F34_14660	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3F34_14660	COG3453	Protein conserved in bacteria
C3F34_14690	COG4382	Mu-like prophage protein Gp16
C3F34_14710	COG0776	regulation of translation
C3F34_14790	COG4373	Mu-like prophage FluMu protein gp28
C3F34_14815	COG4383	Mu-like prophage protein gp29
C3F34_14840	COG4397	Mu-like prophage major head subunit gpT
C3F34_14910	COG3299	homolog of phage Mu protein gp47
C3F34_14945	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_14950	COG1802	Transcriptional regulator
C3F34_15005	COG2308	Evidence 4 Homologs of previously reported genes of
C3F34_15015	COG1305	Transglutaminase-like
C3F34_15035	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3F34_15040	COG0305	Participates in initiation and elongation during chromosome replication
C3F34_15055	COG0360	Binds together with S18 to 16S ribosomal RNA
C3F34_15060	COG0109	protoheme IX farnesyltransferase activity
C3F34_15065	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C3F34_15070	COG1845	cytochrome c oxidase, subunit III
C3F34_15075	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3F34_15080	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
C3F34_15105	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3F34_15120	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
C3F34_15125	COG2890	protein-(glutamine-N5) methyltransferase activity
C3F34_15130	COG3781	membrane
C3F34_15150	COG1960	acyl-CoA dehydrogenase activity
C3F34_15155	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3F34_15185	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3F34_15195	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
C3F34_15220	COG0729	surface antigen
C3F34_15225	COG2911	Protein conserved in bacteria
C3F34_15250	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3F34_15300	COG0471	metal ion transport
C3F34_15340	COG0308	aminopeptidase N
C3F34_15390	COG3135	benzoate transporter
C3F34_15400	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3F34_15405	COG0583	DNA-binding transcription factor activity
C3F34_15415	COG0586	Pfam SNARE associated Golgi protein
C3F34_15425	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_15440	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C3F34_15445	COG0824	Thioesterase
C3F34_15450	COG1454	alcohol dehydrogenase
C3F34_15455	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3F34_15475	COG0069	glutamate synthase activity
C3F34_15480	COG2197	response regulator
C3F34_15485	COG4585	Histidine kinase
C3F34_15490	COG2850	peptidyl-arginine hydroxylation
C3F34_15495	COG0424	maF-like protein
C3F34_15520	COG0697	spore germination
C3F34_15535	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3F34_15545	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3F34_15555	COG3698	Phosphodiester glycosidase
C3F34_15580	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3F34_15590	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C3F34_15620	COG0316	Belongs to the HesB IscA family
C3F34_15625	COG0822	iron-sulfur transferase activity
C3F34_15650	COG0776	regulation of translation
C3F34_15655	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3F34_15715	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
C3F34_15735	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3F34_15745	COG0133	tryptophan synthase activity
C3F34_15750	COG0517	IMP dehydrogenase activity
C3F34_15750	COG0516	GMP reductase activity
C3F34_15775	COG0612	Peptidase, M16
C3F34_15780	COG0552	protein localization to endoplasmic reticulum
C3F34_15835	COG2814	Major facilitator Superfamily
C3F34_15845	COG3706	GGDEF domain
C3F34_15855	COG0439	Biotin carboxylase
C3F34_15860	COG0511	ligase activity, forming carbon-carbon bonds
C3F34_15905	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
C3F34_15910	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3F34_15930	COG0583	DNA-binding transcription factor activity
C3F34_15935	COG1960	acyl-CoA dehydrogenase activity
C3F34_15955	COG1215	transferase activity, transferring glycosyl groups
C3F34_15990	COG0697	spore germination
C3F34_15995	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_16000	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3F34_16005	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
C3F34_16020	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3F34_16025	COG2814	Major facilitator Superfamily
C3F34_16030	COG0509	glycine decarboxylation via glycine cleavage system
C3F34_16045	COG1132	(ABC) transporter
C3F34_16060	COG1280	lysine exporter protein (LysE YggA)
C3F34_16070	COG0668	transmembrane transport
C3F34_16075	COG3122	Protein conserved in bacteria
C3F34_16095	COG0640	Transcriptional regulator
C3F34_16100	COG2937	Belongs to the GPAT DAPAT family
C3F34_16105	COG0596	Alpha beta hydrolase
C3F34_16110	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3F34_16115	COG1335	isochorismatase
C3F34_16120	COG0251	oxidation-reduction process
C3F34_16125	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3F34_16130	COG2233	PERMEase
C3F34_16135	COG2084	Dehydrogenase
C3F34_16140	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3F34_16155	COG1024	Enoyl-CoA hydratase
C3F34_16160	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
C3F34_16165	COG1960	acyl-CoA dehydrogenase activity
C3F34_16170	COG1309	transcriptional regulator
C3F34_16175	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_16185	COG2226	methyltransferase
C3F34_16195	COG1116	anion transmembrane transporter activity
C3F34_16195	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3F34_16205	COG2223	nitrite transmembrane transporter activity
C3F34_16210	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_16215	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3F34_16220	COG0243	molybdopterin cofactor binding
C3F34_16230	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
C3F34_16245	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3F34_16245	COG0315	cyclic pyranopterin monophosphate synthase activity
C3F34_16250	COG0303	'Molybdopterin
C3F34_16255	COG0725	ABC transporter, periplasmic molybdate-binding protein
C3F34_16260	COG4149	molybdate abc transporter
C3F34_16265	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
C3F34_16275	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3F34_16275	COG0475	glutathione-regulated potassium exporter activity
C3F34_16295	COG1131	(ABC) transporter
C3F34_16300	COG0842	Transport permease protein
C3F34_16305	COG0842	Transport permease protein
C3F34_16315	COG0583	DNA-binding transcription factor activity
C3F34_16355	COG1960	acyl-CoA dehydrogenase activity
C3F34_16360	COG1021	2,3-dihydroxybenzoate-AMP ligase
C3F34_16365	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_16370	COG1024	Enoyl-CoA hydratase
C3F34_16375	COG2814	Major facilitator Superfamily
C3F34_16390	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3F34_16405	COG1262	PFAM Formylglycine-generating sulfatase enzyme
C3F34_16440	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3F34_16460	COG1113	amino acid transport
C3F34_16480	COG1301	dicarboxylic acid transport
C3F34_16500	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3F34_16515	COG0019	diaminopimelate decarboxylase activity
C3F34_16520	COG0318	PFAM AMP-dependent synthetase and ligase
C3F34_16530	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3F34_16535	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
C3F34_16545	COG1846	Transcriptional regulator
C3F34_16565	COG0583	DNA-binding transcription factor activity
C3F34_16570	COG1538	Outer membrane efflux protein
C3F34_16585	COG0583	DNA-binding transcription factor activity
C3F34_16595	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3F34_16600	COG1773	rubredoxin
C3F34_16635	COG0625	glutathione transferase activity
C3F34_16645	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3F34_16655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3F34_16695	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C3F34_16700	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C3F34_16705	COG0022	dehydrogenase e1 component
C3F34_16710	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3F34_16715	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3F34_16725	COG1063	alcohol dehydrogenase
C3F34_16750	COG4628	conserved protein (DUF2132)
C3F34_16755	COG1309	transcriptional regulator
C3F34_16760	COG0604	alcohol dehydrogenase
C3F34_16840	COG0596	Alpha beta hydrolase
C3F34_16860	COG0583	DNA-binding transcription factor activity
C3F34_16865	COG1380	Effector of murein hydrolase LrgA
C3F34_16870	COG1346	cytolysis
C3F34_16885	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
C3F34_16900	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3F34_16915	COG1278	Cold shock
C3F34_16935	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3F34_16940	COG2267	carboxylic ester hydrolase activity
C3F34_16945	COG0671	phosphoesterase, PA-phosphatase related
C3F34_16945	COG2453	phosphatase
C3F34_16960	COG4589	Belongs to the CDS family
C3F34_17005	COG0542	response to heat
C3F34_17010	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
C3F34_17025	COG3706	GGDEF domain
C3F34_17035	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
C3F34_17040	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3F34_17050	COG0569	domain protein
C3F34_17055	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3F34_17075	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3F34_17085	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3F34_17105	COG1294	oxidase, subunit
C3F34_17110	COG4890	Cyd operon protein YbgT
C3F34_17145	COG1960	acyl-CoA dehydrogenase activity
C3F34_17150	COG1960	acyl-CoA dehydrogenase activity
C3F34_17155	COG0456	acetyltransferase
C3F34_17160	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3F34_17165	COG2207	Transcriptional regulator
C3F34_17170	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3F34_17175	COG4773	Receptor
C3F34_17195	COG0730	response to heat
C3F34_17200	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3F34_17225	COG0772	Belongs to the SEDS family
C3F34_17240	COG0148	phosphopyruvate hydratase activity
C3F34_17275	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3F34_17275	COG1902	pentaerythritol trinitrate reductase activity
C3F34_17290	COG0583	DNA-binding transcription factor activity
C3F34_17295	COG4948	Mandelate Racemase Muconate Lactonizing
C3F34_17300	COG4829	muconolactone delta-isomerase
C3F34_17310	COG4638	Rieske (2fe-2S)
C3F34_17315	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
C3F34_17320	COG0543	2 iron, 2 sulfur cluster binding
C3F34_17320	COG0633	Ferredoxin
C3F34_17325	COG1028	Short-chain dehydrogenase reductase Sdr
C3F34_17330	COG3135	benzoate transporter
C3F34_17335	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
C3F34_17340	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3F34_17345	COG0183	Belongs to the thiolase family
C3F34_17350	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3F34_17360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3F34_17365	COG1960	acyl-CoA dehydrogenase activity
C3F34_17370	COG0583	DNA-binding transcription factor activity
C3F34_17375	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3F34_17400	COG0702	epimerase
C3F34_17420	COG1218	3'(2'),5'-bisphosphate nucleotidase
C3F34_17425	COG1011	Hydrolase
C3F34_17430	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
C3F34_17440	COG2137	regulation of response to DNA damage stimulus
C3F34_17455	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3F34_17490	COG0575	Belongs to the CDS family
C3F34_17495	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
C3F34_17515	COG3852	Histidine kinase
C3F34_17530	COG0583	DNA-binding transcription factor activity
C3F34_17535	COG0024	Methionine aminopeptidase
C3F34_17545	COG1114	Component of the transport system for branched-chain amino acids
C3F34_17565	COG1253	flavin adenine dinucleotide binding
C3F34_17585	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3F34_17590	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
C3F34_17600	COG2431	L-lysine efflux transmembrane transporter activity
C3F34_17640	COG0590	tRNA wobble adenosine to inosine editing
C3F34_17680	COG1309	transcriptional regulator
C3F34_17685	COG0084	hydrolase, TatD family'
C3F34_17705	COG1663	tetraacyldisaccharide 4'-kinase activity
C3F34_17710	COG1132	(ABC) transporter
C3F34_17720	COG0811	peptide transport
C3F34_17725	COG1475	DNA binding
C3F34_17730	COG1192	Involved in chromosome partitioning
C3F34_17735	COG0357	Ribosomal RNA small subunit methyltransferase G
C3F34_17740	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3F34_17745	COG3178	'Phosphotransferase
C3F34_17760	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3F34_17765	COG1923	regulation of RNA biosynthetic process
C3F34_17775	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
C3F34_17780	COG0802	atpase or kinase
C3F34_17805	COG2707	UPF0756 membrane protein
C3F34_17810	COG0583	DNA-binding transcription factor activity
C3F34_17815	COG2814	Major facilitator Superfamily
C3F34_17820	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3F34_17825	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3F34_17835	COG1454	alcohol dehydrogenase
C3F34_17855	COG0697	spore germination
C3F34_17880	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C3F34_17880	COG0519	Catalyzes the synthesis of GMP from XMP
C3F34_17890	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3F34_17925	COG0515	serine threonine protein kinase
C3F34_17925	COG2815	serine threonine protein kinase
C3F34_17945	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
C3F34_17950	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C3F34_17955	COG1610	YqeY-like protein
C3F34_17970	COG4783	chaperone-mediated protein folding
C3F34_18025	COG0778	Nitroreductase
C3F34_18035	COG0513	Belongs to the DEAD box helicase family
C3F34_18055	COG2363	Small membrane protein
C3F34_18075	COG0625	glutathione transferase activity
C3F34_18085	COG0220	tRNA (guanine-N7-)-methyltransferase activity
C3F34_18105	COG4772	TonB-dependent receptor
C3F34_18110	COG4993	Dehydrogenase
C3F34_18115	COG3659	wide pore channel activity
C3F34_18120	COG3420	alginic acid biosynthetic process
C3F34_18125	COG0710	3-dehydroquinate dehydratase activity
C3F34_18130	COG3485	protocatechuate 3,4-dioxygenase
C3F34_18135	COG3485	protocatechuate 3,4-dioxygenase
C3F34_18140	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3F34_18145	COG2271	Major facilitator Superfamily
C3F34_18150	COG0596	Alpha beta hydrolase
C3F34_18155	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C3F34_18160	COG0183	Belongs to the thiolase family
C3F34_18165	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3F34_18170	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
C3F34_18185	COG2076	Multidrug Resistance protein
C3F34_18280	COG3173	Aminoglycoside phosphotransferase
C3F34_18305	COG3077	Addiction module antitoxin, RelB DinJ family
C3F34_18465	COG2184	nucleotidyltransferase activity
C3F34_18485	COG1785	Belongs to the alkaline phosphatase family
C3F34_18490	COG1785	Belongs to the alkaline phosphatase family
C3F34_18530	COG3316	Transposase and inactivated derivatives
C3F34_18540	COG3038	cytochrome b561
C3F34_18555	COG0671	phosphoesterase, PA-phosphatase related
C3F34_18595	COG0745	RESPONSE REGULATOR receiver
C3F34_18600	COG0642	Histidine kinase
C3F34_18620	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
C3F34_18715	COG1373	ATPase (AAA superfamily
C3F34_18730	COG3316	Transposase and inactivated derivatives
C3F34_18765	COG0589	response to stress
C3F34_18770	COG0640	Transcriptional regulator
C3F34_18780	COG0798	PFAM Bile acid sodium symporter
C3F34_18785	COG0431	NADPH-dependent FMN reductase
C3F34_18790	COG0492	ferredoxin-NADP+ reductase activity
C3F34_18805	COG0659	secondary active sulfate transmembrane transporter activity
C3F34_18810	COG3316	Transposase and inactivated derivatives
C3F34_18835	COG1136	(ABC) transporter
C3F34_18860	COG1294	oxidase, subunit
C3F34_18865	COG1271	oxidase subunit
C3F34_18950	COG0640	Transcriptional regulator
C3F34_19010	COG3316	Transposase and inactivated derivatives
C3F34_19020	COG2801	Transposase and inactivated derivatives
C3F34_19045	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3F34_19050	COG1309	transcriptional regulator
C3F34_19055	COG1012	belongs to the aldehyde dehydrogenase family
C3F34_19090	COG1475	DNA binding
C3F34_19095	COG1192	Involved in chromosome partitioning
C3F34_19170	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
C3F34_19195	COG2369	cell adhesion
C3F34_19200	COG0582	viral genome integration into host DNA
C3F34_19225	COG0830	nickel cation binding
C3F34_19240	COG0829	nickel cation binding
C3F34_19245	COG0831	urea catabolic process
C3F34_19260	COG0804	urea catabolic process
C3F34_19275	COG2351	hydroxyisourate hydrolase activity
C3F34_19280	COG2233	PERMEase
C3F34_19295	COG4266	Belongs to the allantoicase family
C3F34_19300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3F34_19305	COG0583	DNA-binding transcription factor activity
C3F34_19320	COG2233	PERMEase
C3F34_19340	COG0583	DNA-binding transcription factor activity
C3F34_19390	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
C3F34_19405	COG1979	alcohol dehydrogenase
C3F34_19415	COG1902	pentaerythritol trinitrate reductase activity
C3F34_19425	COG1309	transcriptional regulator
C3F34_19430	COG2130	NADP-dependent
C3F34_19465	COG1373	ATPase (AAA superfamily
C3F34_19500	COG3316	Transposase and inactivated derivatives
C3F34_19505	COG0471	metal ion transport
C3F34_19545	COG2217	Heavy metal translocating P-type atpase
C3F34_19550	COG3174	membrane
C3F34_19555	COG2205	protein histidine kinase activity
C3F34_19570	COG2132	Multicopper oxidase
C3F34_19600	COG2072	flavoprotein involved in K transport
C3F34_19650	COG0484	heat shock protein binding
C3F34_19690	COG3173	Aminoglycoside phosphotransferase
C3F34_19720	COG0659	secondary active sulfate transmembrane transporter activity
C3F34_19740	COG3657	addiction module killer protein
C3F34_19745	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3F34_19775	COG3173	Aminoglycoside phosphotransferase
C3F34_19835	COG0589	response to stress
C3F34_19885	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
C3F34_20010	COG5377	YqaJ viral recombinase family
C3F34_20080	COG1484	DNA-dependent DNA replication