locus-tag class description ACIAD0001 PF00308 Bacterial dnaA protein ACIAD0001 PF08299 Bacterial dnaA protein helix-turn-helix ACIAD0001 PF11638 DnaA N-terminal domain ACIAD0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ACIAD0002 PF02767 DNA polymerase III beta subunit, central domain ACIAD0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ACIAD0003 PF02463 RecF/RecN/SMC N terminal domain ACIAD0004 PF00986 DNA gyrase B subunit, carboxyl terminus ACIAD0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0004 PF01751 Toprim domain ACIAD0004 PF00204 DNA gyrase B ACIAD0004 PF18053 DNA gyrase B subunit insert domain ACIAD0007 PF12848 ABC transporter ACIAD0007 PF00005 ABC transporter ACIAD0010 PF01521 Iron-sulphur cluster biosynthesis ACIAD0011 PF03702 Anhydro-N-acetylmuramic acid kinase ACIAD0013 PF00579 tRNA synthetases class I (W and Y) ACIAD0015 PF02872 5'-nucleotidase, C-terminal domain ACIAD0015 PF00149 Calcineurin-like phosphoesterase ACIAD0017 PF13417 Glutathione S-transferase, N-terminal domain ACIAD0020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD0021 PF01252 Signal peptidase (SPase) II ACIAD0022 PF06827 Zinc finger found in FPG and IleRS ACIAD0022 PF00133 tRNA synthetases class I (I, L, M and V) ACIAD0022 PF08264 Anticodon-binding domain of tRNA ACIAD0023 PF06574 FAD synthetase ACIAD0023 PF01687 Riboflavin kinase ACIAD0025 PF12697 Alpha/beta hydrolase family ACIAD0026 PF08362 YcdC-like protein, C-terminal region ACIAD0026 PF00440 Bacterial regulatory proteins, tetR family ACIAD0027 PF00296 Luciferase-like monooxygenase ACIAD0028 PF00857 Isochorismatase family ACIAD0029 PF01042 Endoribonuclease L-PSP ACIAD0030 PF01613 Flavin reductase like domain ACIAD0031 PF00860 Permease family ACIAD0032 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIAD0032 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACIAD0034 PF00005 ABC transporter ACIAD0035 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD0036 PF00296 Luciferase-like monooxygenase ACIAD0037 PF09084 NMT1/THI5 like ACIAD0038 PF09084 NMT1/THI5 like ACIAD0039 PF00583 Acetyltransferase (GNAT) family ACIAD0039 PF00696 Amino acid kinase family ACIAD0042 PF00106 short chain dehydrogenase ACIAD0043 PF13419 Haloacid dehalogenase-like hydrolase ACIAD0045 PF01323 DSBA-like thioredoxin domain ACIAD0046 PF08360 QacR-like protein, C-terminal region ACIAD0046 PF00440 Bacterial regulatory proteins, tetR family ACIAD0047 PF00440 Bacterial regulatory proteins, tetR family ACIAD0048 PF00042 Globin ACIAD0048 PF00175 Oxidoreductase NAD-binding domain ACIAD0048 PF00970 Oxidoreductase FAD-binding domain ACIAD0049 PF00487 Fatty acid desaturase ACIAD0050 PF01138 3' exoribonuclease family, domain 1 ACIAD0050 PF03725 3' exoribonuclease family, domain 2 ACIAD0062 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACIAD0062 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACIAD0063 PF01510 N-acetylmuramoyl-L-alanine amidase ACIAD0064 PF03023 Lipid II flippase MurJ ACIAD0065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD0065 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACIAD0066 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACIAD0066 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD0068 PF02706 Chain length determinant protein ACIAD0068 PF13807 G-rich domain on putative tyrosine kinase ACIAD0068 PF13614 AAA domain ACIAD0069 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIAD0070 PF10531 SLBB domain ACIAD0070 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ACIAD0070 PF02563 Polysaccharide biosynthesis/export protein ACIAD0072 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIAD0072 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIAD0072 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIAD0074 PF00535 Glycosyl transferase family 2 ACIAD0076 PF16363 GDP-mannose 4,6 dehydratase ACIAD0078 PF04321 RmlD substrate binding domain ACIAD0079 PF00483 Nucleotidyl transferase ACIAD0080 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACIAD0081 PF13439 Glycosyltransferase Family 4 ACIAD0081 PF00534 Glycosyl transferases group 1 ACIAD0084 PF00534 Glycosyl transferases group 1 ACIAD0084 PF13439 Glycosyltransferase Family 4 ACIAD0086 PF01050 Mannose-6-phosphate isomerase ACIAD0086 PF00483 Nucleotidyl transferase ACIAD0087 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIAD0087 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIAD0087 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIAD0088 PF01370 NAD dependent epimerase/dehydratase family ACIAD0090 PF00534 Glycosyl transferases group 1 ACIAD0090 PF13439 Glycosyltransferase Family 4 ACIAD0091 PF13439 Glycosyltransferase Family 4 ACIAD0091 PF00534 Glycosyl transferases group 1 ACIAD0092 PF00534 Glycosyl transferases group 1 ACIAD0092 PF13477 Glycosyl transferase 4-like ACIAD0093 PF02397 Bacterial sugar transferase ACIAD0094 PF14602 Hexapeptide repeat of succinyl-transferase ACIAD0094 PF17836 PglD N-terminal domain ACIAD0094 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD0095 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIAD0096 PF02719 Polysaccharide biosynthesis protein ACIAD0098 PF02397 Bacterial sugar transferase ACIAD0099 PF00483 Nucleotidyl transferase ACIAD0100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIAD0100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIAD0100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIAD0101 PF00342 Phosphoglucose isomerase ACIAD0102 PF16363 GDP-mannose 4,6 dehydratase ACIAD0103 PF15864 Protein glycosylation ligase ACIAD0103 PF04932 O-Antigen ligase ACIAD0103 PF11846 Virulence factor membrane-bound polymerase, C-terminal ACIAD0104 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIAD0104 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIAD0104 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIAD0104 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIAD0105 PF03466 LysR substrate binding domain ACIAD0105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0106 PF02652 L-lactate permease ACIAD0107 PF07729 FCD domain ACIAD0107 PF00392 Bacterial regulatory proteins, gntR family ACIAD0108 PF01070 FMN-dependent dehydrogenase ACIAD0109 PF09330 D-lactate dehydrogenase, membrane binding ACIAD0109 PF01565 FAD binding domain ACIAD0110 PF14052 Capsule assembly protein Wzi ACIAD0112 PF00155 Aminotransferase class I and II ACIAD0114 PF01037 Lrp/AsnC ligand binding domain ACIAD0115 PF01266 FAD dependent oxidoreductase ACIAD0116 PF01168 Alanine racemase, N-terminal domain ACIAD0116 PF00842 Alanine racemase, C-terminal domain ACIAD0117 PF01042 Endoribonuclease L-PSP ACIAD0118 PF00324 Amino acid permease ACIAD0120 PF02753 Pili assembly chaperone PapD, C-terminal domain ACIAD0120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ACIAD0121 PF13953 PapC C-terminal domain ACIAD0121 PF13954 PapC N-terminal domain ACIAD0121 PF00577 Outer membrane usher protein ACIAD0123 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ACIAD0123 PF02753 Pili assembly chaperone PapD, C-terminal domain ACIAD0126 PF08666 SAF domain ACIAD0126 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ACIAD0127 PF07690 Major Facilitator Superfamily ACIAD0128 PF13378 Enolase C-terminal domain-like ACIAD0130 PF00701 Dihydrodipicolinate synthetase family ACIAD0131 PF00171 Aldehyde dehydrogenase family ACIAD0132 PF07729 FCD domain ACIAD0132 PF00392 Bacterial regulatory proteins, gntR family ACIAD0133 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD0133 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD0135 PF00356 Bacterial regulatory proteins, lacI family ACIAD0136 PF00860 Permease family ACIAD0137 PF01979 Amidohydrolase family ACIAD0142 PF01722 BolA-like protein ACIAD0144 PF13614 AAA domain ACIAD0148 PF09335 SNARE associated Golgi protein ACIAD0149 PF07681 DoxX ACIAD0150 PF04076 Bacterial OB fold (BOF) protein ACIAD0151 PF02540 NAD synthase ACIAD0151 PF00958 GMP synthase C terminal domain ACIAD0151 PF00117 Glutamine amidotransferase class-I ACIAD0154 PF03551 Transcriptional regulator PadR-like family ACIAD0157 PF02678 Pirin ACIAD0157 PF05726 Pirin C-terminal cupin domain ACIAD0161 PF00892 EamA-like transporter family ACIAD0164 PF03485 Arginyl tRNA synthetase N terminal domain ACIAD0164 PF05746 DALR anticodon binding domain ACIAD0164 PF00750 tRNA synthetases class I (R) ACIAD0166 PF03949 Malic enzyme, NAD binding domain ACIAD0166 PF00390 Malic enzyme, N-terminal domain ACIAD0167 PF16671 Actin cross-linking domain ACIAD0167 PF04717 Type VI secretion system, phage-baseplate injector ACIAD0168 PF01510 N-acetylmuramoyl-L-alanine amidase ACIAD0168 PF01476 LysM domain ACIAD0168 PF01471 Putative peptidoglycan binding domain ACIAD0172 PF04261 Dyp-type peroxidase family ACIAD0173 PF01810 LysE type translocator ACIAD0174 PF00950 ABC 3 transport family ACIAD0175 PF00005 ABC transporter ACIAD0180 PF00119 ATP synthase A chain ACIAD0182 PF00137 ATP synthase subunit C ACIAD0183 PF00430 ATP synthase B/B' CF(0) ACIAD0184 PF00213 ATP synthase delta (OSCP) subunit ACIAD0185 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIAD0185 PF00306 ATP synthase alpha/beta chain, C terminal domain ACIAD0185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIAD0186 PF00231 ATP synthase ACIAD0187 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIAD0187 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIAD0188 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACIAD0189 PF11008 Protein of unknown function (DUF2846) ACIAD0191 PF01263 Aldose 1-epimerase ACIAD0193 PF00255 Glutathione peroxidase ACIAD0195 PF07690 Major Facilitator Superfamily ACIAD0196 PF00440 Bacterial regulatory proteins, tetR family ACIAD0197 PF00892 EamA-like transporter family ACIAD0198 PF02608 ABC transporter substrate-binding protein PnrA-like ACIAD0199 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD0199 PF00355 Rieske [2Fe-2S] domain ACIAD0202 PF03466 LysR substrate binding domain ACIAD0202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0208 PF01300 Telomere recombination ACIAD0209 PF17782 DprA winged helix domain ACIAD0209 PF02481 DNA recombination-mediator protein A ACIAD0210 PF01476 LysM domain ACIAD0211 PF01327 Polypeptide deformylase ACIAD0217 PF00440 Bacterial regulatory proteins, tetR family ACIAD0220 PF11842 Domain of unknown function (DUF3362) ACIAD0220 PF04055 Radical SAM superfamily ACIAD0220 PF08497 Radical SAM N-terminal ACIAD0223 PF00083 Sugar (and other) transporter ACIAD0223 PF07690 Major Facilitator Superfamily ACIAD0225 PF00817 impB/mucB/samB family ACIAD0225 PF11798 IMS family HHH motif ACIAD0225 PF11799 impB/mucB/samB family C-terminal domain ACIAD0226 PF01183 Glycosyl hydrolases family 25 ACIAD0228 PF07690 Major Facilitator Superfamily ACIAD0229 PF03641 Possible lysine decarboxylase ACIAD0230 PF03741 Integral membrane protein TerC family ACIAD0230 PF03471 Transporter associated domain ACIAD0231 PF02810 SEC-C motif ACIAD0232 PF03458 UPF0126 domain ACIAD0233 PF07690 Major Facilitator Superfamily ACIAD0234 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIAD0234 PF03989 DNA gyrase C-terminal domain, beta-propeller ACIAD0235 PF13193 AMP-binding enzyme C-terminal domain ACIAD0235 PF00501 AMP-binding enzyme ACIAD0239 PF00719 Inorganic pyrophosphatase ACIAD0242 PF01078 Magnesium chelatase, subunit ChlI ACIAD0242 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACIAD0244 PF00543 Nitrogen regulatory protein P-II ACIAD0245 PF00909 Ammonium Transporter Family ACIAD0246 PF03477 ATP cone domain ACIAD0247 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIAD0247 PF01872 RibD C-terminal domain ACIAD0249 PF00677 Lumazine binding domain ACIAD0253 PF02789 Cytosol aminopeptidase family, N-terminal domain ACIAD0253 PF00883 Cytosol aminopeptidase family, catalytic domain ACIAD0255 PF03739 Lipopolysaccharide export system permease LptF/LptG ACIAD0256 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACIAD0256 PF01676 Metalloenzyme superfamily ACIAD0257 PF00595 PDZ domain ACIAD0257 PF03572 Peptidase family S41 ACIAD0258 PF00158 Sigma-54 interaction domain ACIAD0258 PF02954 Bacterial regulatory protein, Fis family ACIAD0258 PF00072 Response regulator receiver domain ACIAD0259 PF00512 His Kinase A (phospho-acceptor) domain ACIAD0259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0260 PF00072 Response regulator receiver domain ACIAD0260 PF00196 Bacterial regulatory proteins, luxR family ACIAD0262 PF00768 D-alanyl-D-alanine carboxypeptidase ACIAD0263 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD0264 PF00742 Homoserine dehydrogenase ACIAD0264 PF01842 ACT domain ACIAD0264 PF03447 Homoserine dehydrogenase, NAD binding domain ACIAD0265 PF13098 Thioredoxin-like domain ACIAD0265 PF10411 Disulfide bond isomerase protein N-terminus ACIAD0266 PF02899 Phage integrase, N-terminal SAM-like domain ACIAD0266 PF00589 Phage integrase family ACIAD0268 PF07670 Nucleoside recognition ACIAD0268 PF07664 Ferrous iron transport protein B C terminus ACIAD0268 PF02421 Ferrous iron transport protein B ACIAD0270 PF02875 Mur ligase family, glutamate ligase domain ACIAD0270 PF08245 Mur ligase middle domain ACIAD0271 PF01098 Cell cycle protein ACIAD0272 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIAD0273 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACIAD0274 PF00149 Calcineurin-like phosphoesterase ACIAD0275 PF00293 NUDIX domain ACIAD0276 PF01964 Radical SAM ThiC family ACIAD0276 PF13667 ThiC-associated domain ACIAD0278 PF02321 Outer membrane efflux protein ACIAD0279 PF01895 PhoU domain ACIAD0282 PF04362 Bacterial Fe(2+) trafficking ACIAD0283 PF14698 Argininosuccinate lyase C-terminal ACIAD0283 PF00206 Lyase ACIAD0284 PF06580 Histidine kinase ACIAD0284 PF07694 5TMR of 5TMR-LYT ACIAD0284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0285 PF00072 Response regulator receiver domain ACIAD0285 PF04397 LytTr DNA-binding domain ACIAD0286 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACIAD0286 PF03900 Porphobilinogen deaminase, C-terminal domain ACIAD0290 PF03061 Thioesterase superfamily ACIAD0291 PF00816 H-NS histone family ACIAD0294 PF03958 Bacterial type II/III secretion system short domain ACIAD0294 PF00263 Bacterial type II and III secretion system protein ACIAD0295 PF16697 Inner membrane component of T3SS, cytoplasmic domain ACIAD0296 PF13419 Haloacid dehalogenase-like hydrolase ACIAD0297 PF04715 Anthranilate synthase component I, N terminal region ACIAD0297 PF00425 chorismate binding enzyme ACIAD0299 PF00009 Elongation factor Tu GTP binding domain ACIAD0299 PF03144 Elongation factor Tu domain 2 ACIAD0299 PF03143 Elongation factor Tu C-terminal domain ACIAD0300 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ACIAD0301 PF02357 Transcription termination factor nusG ACIAD0301 PF00467 KOW motif ACIAD0302 PF00298 Ribosomal protein L11, RNA binding domain ACIAD0302 PF03946 Ribosomal protein L11, N-terminal domain ACIAD0304 PF00687 Ribosomal protein L1p/L10e family ACIAD0305 PF00466 Ribosomal protein L10 ACIAD0306 PF16320 Ribosomal protein L7/L12 dimerisation domain ACIAD0306 PF00542 Ribosomal protein L7/L12 C-terminal domain ACIAD0307 PF00562 RNA polymerase Rpb2, domain 6 ACIAD0307 PF04563 RNA polymerase beta subunit ACIAD0307 PF04561 RNA polymerase Rpb2, domain 2 ACIAD0307 PF10385 RNA polymerase beta subunit external 1 domain ACIAD0307 PF04565 RNA polymerase Rpb2, domain 3 ACIAD0307 PF04560 RNA polymerase Rpb2, domain 7 ACIAD0308 PF04998 RNA polymerase Rpb1, domain 5 ACIAD0308 PF05000 RNA polymerase Rpb1, domain 4 ACIAD0308 PF04983 RNA polymerase Rpb1, domain 3 ACIAD0308 PF04997 RNA polymerase Rpb1, domain 1 ACIAD0308 PF00623 RNA polymerase Rpb1, domain 2 ACIAD0312 PF00561 alpha/beta hydrolase fold ACIAD0313 PF03553 Na+/H+ antiporter family ACIAD0313 PF13726 Na+-H+ antiporter family ACIAD0316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0316 PF00183 Hsp90 protein ACIAD0318 PF01177 Asp/Glu/Hydantoin racemase ACIAD0319 PF00375 Sodium:dicarboxylate symporter family ACIAD0320 PF01527 Transposase ACIAD0321 PF00665 Integrase core domain ACIAD0321 PF13276 HTH-like domain ACIAD0321 PF13333 Integrase core domain ACIAD0323 PF03466 LysR substrate binding domain ACIAD0323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0331 PF01323 DSBA-like thioredoxin domain ACIAD0334 PF00108 Thiolase, N-terminal domain ACIAD0334 PF02803 Thiolase, C-terminal domain ACIAD0335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACIAD0335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACIAD0335 PF00378 Enoyl-CoA hydratase/isomerase ACIAD0340 PF08459 UvrC Helix-hairpin-helix N-terminal ACIAD0340 PF02151 UvrB/uvrC motif ACIAD0340 PF01541 GIY-YIG catalytic domain ACIAD0342 PF01066 CDP-alcohol phosphatidyltransferase ACIAD0344 PF02805 Metal binding domain of Ada ACIAD0344 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACIAD0344 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACIAD0344 PF12833 Helix-turn-helix domain ACIAD0351 PF13533 Biotin-lipoyl like ACIAD0352 PF03652 Holliday junction resolvase ACIAD0353 PF02622 Uncharacterized ACR, COG1678 ACIAD0354 PF02463 RecF/RecN/SMC N terminal domain ACIAD0356 PF06865 Pyrimidine/purine nucleoside phosphorylase ACIAD0357 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACIAD0357 PF00588 SpoU rRNA Methylase family ACIAD0359 PF01121 Dephospho-CoA kinase ACIAD0360 PF01478 Type IV leader peptidase family ACIAD0360 PF06750 Bacterial Peptidase A24 N-terminal domain ACIAD0361 PF00482 Type II secretion system (T2SS), protein F ACIAD0362 PF00437 Type II/IV secretion system protein ACIAD0362 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACIAD0363 PF00121 Triosephosphate isomerase ACIAD0364 PF03840 Preprotein translocase SecG subunit ACIAD0367 PF02576 RimP N-terminal domain ACIAD0367 PF17384 RimP C-terminal SH3 domain ACIAD0368 PF00575 S1 RNA binding domain ACIAD0368 PF13184 NusA-like KH domain ACIAD0368 PF08529 NusA N-terminal domain ACIAD0369 PF08364 Bacterial translation initiation factor IF-2 associated region ACIAD0369 PF04760 Translation initiation factor IF-2, N-terminal region ACIAD0369 PF11987 Translation-initiation factor 2 ACIAD0369 PF00009 Elongation factor Tu GTP binding domain ACIAD0370 PF02033 Ribosome-binding factor A ACIAD0372 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ACIAD0374 PF00361 Proton-conducting membrane transporter ACIAD0375 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIAD0376 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIAD0376 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ACIAD0376 PF00361 Proton-conducting membrane transporter ACIAD0376 PF13244 Domain of unknown function (DUF4040) ACIAD0378 PF02463 RecF/RecN/SMC N terminal domain ACIAD0380 PF01502 Phosphoribosyl-AMP cyclohydrolase ACIAD0381 PF01494 FAD binding domain ACIAD0382 PF03109 ABC1 family ACIAD0384 PF01209 ubiE/COQ5 methyltransferase family ACIAD0388 PF02753 Pili assembly chaperone PapD, C-terminal domain ACIAD0388 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ACIAD0389 PF00577 Outer membrane usher protein ACIAD0389 PF13954 PapC N-terminal domain ACIAD0389 PF13953 PapC C-terminal domain ACIAD0394 PF03976 Polyphosphate kinase 2 (PPK2) ACIAD0395 PF07690 Major Facilitator Superfamily ACIAD0397 PF17946 RecC C-terminal domain ACIAD0398 PF00580 UvrD/REP helicase N-terminal domain ACIAD0398 PF12705 PD-(D/E)XK nuclease superfamily ACIAD0398 PF13361 UvrD-like helicase C-terminal domain ACIAD0399 PF13538 UvrD-like helicase C-terminal domain ACIAD0401 PF00312 Ribosomal protein S15 ACIAD0402 PF01138 3' exoribonuclease family, domain 1 ACIAD0402 PF03725 3' exoribonuclease family, domain 2 ACIAD0402 PF00013 KH domain ACIAD0402 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACIAD0402 PF00575 S1 RNA binding domain ACIAD0403 PF01544 CorA-like Mg2+ transporter protein ACIAD0404 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACIAD0406 PF00226 DnaJ domain ACIAD0406 PF01556 DnaJ C terminal domain ACIAD0407 PF01430 Hsp33 protein ACIAD0408 PF02254 TrkA-N domain ACIAD0408 PF00999 Sodium/hydrogen exchanger family ACIAD0409 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACIAD0409 PF17764 3′ DNA-binding domain (3′BD) ACIAD0409 PF00271 Helicase conserved C-terminal domain ACIAD0409 PF00270 DEAD/DEAH box helicase ACIAD0409 PF18074 Primosomal protein N C-terminal domain ACIAD0411 PF00482 Type II secretion system (T2SS), protein F ACIAD0412 PF07963 Prokaryotic N-terminal methylation motif ACIAD0412 PF08334 Type II secretion system (T2SS), protein G ACIAD0415 PF00795 Carbon-nitrogen hydrolase ACIAD0416 PF00571 CBS domain ACIAD0416 PF03471 Transporter associated domain ACIAD0418 PF01488 Shikimate / quinate 5-dehydrogenase ACIAD0418 PF08501 Shikimate dehydrogenase substrate binding domain ACIAD0418 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ACIAD0419 PF03884 DNA gyrase inhibitor YacG ACIAD0421 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACIAD0421 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD0421 PF13247 4Fe-4S dicluster domain ACIAD0425 PF01197 Ribosomal protein L31 ACIAD0426 PF03109 ABC1 family ACIAD0427 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD0427 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD0428 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD0428 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD0428 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD0429 PF01554 MatE ACIAD0432 PF04055 Radical SAM superfamily ACIAD0432 PF06969 HemN C-terminal domain ACIAD0434 PF03466 LysR substrate binding domain ACIAD0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0436 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIAD0436 PF00578 AhpC/TSA family ACIAD0437 PF00501 AMP-binding enzyme ACIAD0437 PF13193 AMP-binding enzyme C-terminal domain ACIAD0438 PF00575 S1 RNA binding domain ACIAD0438 PF10150 Ribonuclease E/G family ACIAD0438 PF12111 Polyribonucleotide phosphorylase C terminal ACIAD0442 PF01479 S4 domain ACIAD0442 PF00849 RNA pseudouridylate synthase ACIAD0443 PF13419 Haloacid dehalogenase-like hydrolase ACIAD0445 PF02798 Glutathione S-transferase, N-terminal domain ACIAD0448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0448 PF03466 LysR substrate binding domain ACIAD0450 PF12706 Beta-lactamase superfamily domain ACIAD0451 PF06628 Catalase-related immune-responsive ACIAD0451 PF00199 Catalase ACIAD0452 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD0452 PF18158 Adaptive response protein AidB N-terminal domain ACIAD0452 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD0454 PF05524 PEP-utilising enzyme, N-terminal ACIAD0454 PF01590 GAF domain ACIAD0454 PF00391 PEP-utilising enzyme, mobile domain ACIAD0454 PF02896 PEP-utilising enzyme, TIM barrel domain ACIAD0455 PF00293 NUDIX domain ACIAD0459 PF00355 Rieske [2Fe-2S] domain ACIAD0461 PF03466 LysR substrate binding domain ACIAD0461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0463 PF00330 Aconitase family (aconitate hydratase) ACIAD0466 PF00694 Aconitase C-terminal domain ACIAD0469 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIAD0472 PF01176 Translation initiation factor 1A / IF-1 ACIAD0474 PF01416 tRNA pseudouridine synthase ACIAD0479 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIAD0479 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIAD0481 PF00375 Sodium:dicarboxylate symporter family ACIAD0484 PF03279 Bacterial lipid A biosynthesis acyltransferase ACIAD0486 PF01810 LysE type translocator ACIAD0493 PF01396 Topoisomerase DNA binding C4 zinc finger ACIAD0493 PF01751 Toprim domain ACIAD0493 PF01131 DNA topoisomerase ACIAD0493 PF08272 Topoisomerase I zinc-ribbon-like ACIAD0495 PF13361 UvrD-like helicase C-terminal domain ACIAD0495 PF00580 UvrD/REP helicase N-terminal domain ACIAD0500 PF02254 TrkA-N domain ACIAD0500 PF00999 Sodium/hydrogen exchanger family ACIAD0501 PF00471 Ribosomal protein L33 ACIAD0502 PF00830 Ribosomal L28 family ACIAD0503 PF00171 Aldehyde dehydrogenase family ACIAD0504 PF00440 Bacterial regulatory proteins, tetR family ACIAD0504 PF08360 QacR-like protein, C-terminal region ACIAD0505 PF00551 Formyl transferase ACIAD0505 PF01842 ACT domain ACIAD0508 PF01618 MotA/TolQ/ExbB proton channel family ACIAD0510 PF01625 Peptide methionine sulfoxide reductase ACIAD0514 PF00186 Dihydrofolate reductase ACIAD0515 PF00303 Thymidylate synthase ACIAD0518 PF01790 Prolipoprotein diacylglyceryl transferase ACIAD0521 PF00902 Sec-independent protein translocase protein (TatC) ACIAD0522 PF02416 mttA/Hcf106 family ACIAD0523 PF02416 mttA/Hcf106 family ACIAD0526 PF01725 Ham1 family ACIAD0528 PF00561 alpha/beta hydrolase fold ACIAD0528 PF07021 Methionine biosynthesis protein MetW ACIAD0529 PF00561 alpha/beta hydrolase fold ACIAD0530 PF08502 LeuA allosteric (dimerisation) domain ACIAD0530 PF00682 HMGL-like ACIAD0531 PF18331 PKHD-type hydroxylase C-terminal domain ACIAD0531 PF13640 2OG-Fe(II) oxygenase superfamily ACIAD0532 PF00593 TonB dependent receptor ACIAD0532 PF07715 TonB-dependent Receptor Plug Domain ACIAD0533 PF05697 Bacterial trigger factor protein (TF) ACIAD0533 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD0533 PF05698 Bacterial trigger factor protein (TF) C-terminus ACIAD0534 PF00574 Clp protease ACIAD0535 PF10431 C-terminal, D2-small domain, of ClpB protein ACIAD0535 PF07724 AAA domain (Cdc48 subfamily) ACIAD0535 PF06689 ClpX C4-type zinc finger ACIAD0538 PF05683 Fumarase C-terminus ACIAD0538 PF05681 Fumarate hydratase (Fumerase) ACIAD0540 PF07085 DRTGG domain ACIAD0540 PF01515 Phosphate acetyl/butaryl transferase ACIAD0541 PF00871 Acetokinase family ACIAD0542 PF00920 Dehydratase family ACIAD0543 PF01081 KDPG and KHG aldolase ACIAD0544 PF02447 GntP family permease ACIAD0545 PF01202 Shikimate kinase ACIAD0546 PF00171 Aldehyde dehydrogenase family ACIAD0547 PF00171 Aldehyde dehydrogenase family ACIAD0551 PF00933 Glycosyl hydrolase family 3 N terminal domain ACIAD0552 PF11818 C-terminal domain of tail specific protease (DUF3340) ACIAD0552 PF17804 Tail specific protease N-terminal domain ACIAD0552 PF00595 PDZ domain ACIAD0552 PF03572 Peptidase family S41 ACIAD0553 PF00534 Glycosyl transferases group 1 ACIAD0553 PF13439 Glycosyltransferase Family 4 ACIAD0554 PF01569 PAP2 superfamily ACIAD0555 PF04384 Iron-sulphur cluster assembly ACIAD0556 PF00334 Nucleoside diphosphate kinase ACIAD0557 PF04055 Radical SAM superfamily ACIAD0560 PF13464 Domain of unknown function (DUF4115) ACIAD0561 PF04551 GcpE protein ACIAD0562 PF13393 Histidyl-tRNA synthetase ACIAD0562 PF03129 Anticodon binding domain ACIAD0564 PF13360 PQQ-like domain ACIAD0565 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACIAD0565 PF01926 50S ribosome-binding GTPase ACIAD0568 PF00550 Phosphopantetheine attachment site ACIAD0569 PF00550 Phosphopantetheine attachment site ACIAD0571 PF07977 FabA-like domain ACIAD0574 PF00221 Aromatic amino acid lyase ACIAD0578 PF04820 Tryptophan halogenase ACIAD0580 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIAD0580 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIAD0583 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIAD0583 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIAD0587 PF07549 SecD/SecF GG Motif ACIAD0587 PF02355 Protein export membrane protein ACIAD0588 PF02355 Protein export membrane protein ACIAD0588 PF13721 SecD export protein N-terminal TM region ACIAD0588 PF07549 SecD/SecF GG Motif ACIAD0589 PF02699 Preprotein translocase subunit ACIAD0590 PF01702 Queuine tRNA-ribosyltransferase ACIAD0591 PF02547 Queuosine biosynthesis protein ACIAD0595 PF13426 PAS domain ACIAD0595 PF00512 His Kinase A (phospho-acceptor) domain ACIAD0595 PF00672 HAMP domain ACIAD0595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0596 PF08335 GlnD PII-uridylyltransferase ACIAD0596 PF03710 Glutamate-ammonia ligase adenylyltransferase ACIAD0597 PF01063 Amino-transferase class IV ACIAD0600 PF01522 Polysaccharide deacetylase ACIAD0601 PF00535 Glycosyl transferase family 2 ACIAD0602 PF00534 Glycosyl transferases group 1 ACIAD0602 PF13439 Glycosyltransferase Family 4 ACIAD0609 PF01336 OB-fold nucleic acid binding domain ACIAD0609 PF02938 GAD domain ACIAD0609 PF00152 tRNA synthetases class II (D, K and N) ACIAD0611 PF00593 TonB dependent receptor ACIAD0611 PF07715 TonB-dependent Receptor Plug Domain ACIAD0612 PF07715 TonB-dependent Receptor Plug Domain ACIAD0612 PF00593 TonB dependent receptor ACIAD0621 PF06146 Phosphate-starvation-inducible E ACIAD0623 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD0623 PF12806 Acetyl-CoA dehydrogenase C-terminal like ACIAD0623 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD0623 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD0624 PF12806 Acetyl-CoA dehydrogenase C-terminal like ACIAD0624 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD0624 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD0624 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD0626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0626 PF00672 HAMP domain ACIAD0626 PF00512 His Kinase A (phospho-acceptor) domain ACIAD0627 PF00072 Response regulator receiver domain ACIAD0627 PF00486 Transcriptional regulatory protein, C terminal ACIAD0628 PF04237 YjbR ACIAD0629 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACIAD0633 PF01923 Cobalamin adenosyltransferase ACIAD0634 PF07715 TonB-dependent Receptor Plug Domain ACIAD0634 PF00593 TonB dependent receptor ACIAD0635 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACIAD0636 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD0641 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ACIAD0641 PF12833 Helix-turn-helix domain ACIAD0642 PF00290 Tryptophan synthase alpha chain ACIAD0643 PF01039 Carboxyl transferase domain ACIAD0644 PF02875 Mur ligase family, glutamate ligase domain ACIAD0644 PF08245 Mur ligase middle domain ACIAD0646 PF00753 Metallo-beta-lactamase superfamily ACIAD0647 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIAD0647 PF00578 AhpC/TSA family ACIAD0648 PF02810 SEC-C motif ACIAD0648 PF07516 SecA Wing and Scaffold domain ACIAD0648 PF07517 SecA DEAD-like domain ACIAD0648 PF01043 SecA preprotein cross-linking domain ACIAD0650 PF01960 ArgJ family ACIAD0651 PF02445 Quinolinate synthetase A protein ACIAD0654 PF17152 Periplasmic sensor domain ACIAD0654 PF00990 Diguanylate cyclase, GGDEF domain ACIAD0655 PF13689 YfiR/HmsC-like ACIAD0657 PF04963 Sigma-54 factor, core binding domain ACIAD0657 PF00309 Sigma-54 factor, Activator interacting domain (AID) ACIAD0657 PF04552 Sigma-54, DNA binding domain ACIAD0658 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACIAD0659 PF01722 BolA-like protein ACIAD0660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIAD0661 PF01634 ATP phosphoribosyltransferase ACIAD0663 PF00815 Histidinol dehydrogenase ACIAD0664 PF00155 Aminotransferase class I and II ACIAD0665 PF00425 chorismate binding enzyme ACIAD0665 PF04715 Anthranilate synthase component I, N terminal region ACIAD0674 PF00293 NUDIX domain ACIAD0675 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD0677 PF00814 Glycoprotease family ACIAD0678 PF02673 Bacitracin resistance protein BacA ACIAD0679 PF04445 Putative SAM-dependent methyltransferase ACIAD0682 PF00756 Putative esterase ACIAD0685 PF00834 Ribulose-phosphate 3 epimerase family ACIAD0687 PF00394 Multicopper oxidase ACIAD0687 PF07731 Multicopper oxidase ACIAD0687 PF07732 Multicopper oxidase ACIAD0691 PF00893 Small Multidrug Resistance protein ACIAD0692 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACIAD0692 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACIAD0694 PF00108 Thiolase, N-terminal domain ACIAD0694 PF02803 Thiolase, C-terminal domain ACIAD0697 PF00691 OmpA family ACIAD0697 PF13505 Outer membrane protein beta-barrel domain ACIAD0700 PF00324 Amino acid permease ACIAD0701 PF05175 Methyltransferase small domain ACIAD0701 PF08468 Methyltransferase small domain N-terminal ACIAD0702 PF00860 Permease family ACIAD0704 PF01741 Large-conductance mechanosensitive channel, MscL ACIAD0706 PF00639 PPIC-type PPIASE domain ACIAD0706 PF09312 SurA N-terminal domain ACIAD0707 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACIAD0707 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACIAD0707 PF06827 Zinc finger found in FPG and IleRS ACIAD0708 PF00593 TonB dependent receptor ACIAD0708 PF07715 TonB-dependent Receptor Plug Domain ACIAD0709 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD0713 PF13098 Thioredoxin-like domain ACIAD0713 PF10411 Disulfide bond isomerase protein N-terminus ACIAD0715 PF00849 RNA pseudouridylate synthase ACIAD0719 PF03831 PhnA domain ACIAD0719 PF08274 PhnA Zinc-Ribbon ACIAD0721 PF07411 Domain of unknown function (DUF1508) ACIAD0722 PF00268 Ribonucleotide reductase, small chain ACIAD0724 PF02867 Ribonucleotide reductase, barrel domain ACIAD0724 PF00317 Ribonucleotide reductase, all-alpha domain ACIAD0724 PF03477 ATP cone domain ACIAD0726 PF00072 Response regulator receiver domain ACIAD0726 PF00486 Transcriptional regulatory protein, C terminal ACIAD0727 PF00672 HAMP domain ACIAD0727 PF00512 His Kinase A (phospho-acceptor) domain ACIAD0727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0730 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACIAD0731 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIAD0733 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIAD0733 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIAD0735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACIAD0735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACIAD0735 PF10531 SLBB domain ACIAD0736 PF00384 Molybdopterin oxidoreductase ACIAD0736 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIAD0736 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIAD0737 PF00146 NADH dehydrogenase ACIAD0738 PF12838 4Fe-4S dicluster domain ACIAD0739 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACIAD0740 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIAD0741 PF00361 Proton-conducting membrane transporter ACIAD0741 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIAD0742 PF00361 Proton-conducting membrane transporter ACIAD0743 PF00361 Proton-conducting membrane transporter ACIAD0745 PF00593 TonB dependent receptor ACIAD0745 PF07715 TonB-dependent Receptor Plug Domain ACIAD0746 PF03466 LysR substrate binding domain ACIAD0746 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0747 PF00970 Oxidoreductase FAD-binding domain ACIAD0747 PF00175 Oxidoreductase NAD-binding domain ACIAD0750 PF05552 Conserved TM helix ACIAD0753 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD0755 PF13533 Biotin-lipoyl like ACIAD0756 PF07690 Major Facilitator Superfamily ACIAD0758 PF08241 Methyltransferase domain ACIAD0759 PF01810 LysE type translocator ACIAD0761 PF01979 Amidohydrolase family ACIAD0762 PF00860 Permease family ACIAD0764 PF03171 2OG-Fe(II) oxygenase superfamily ACIAD0764 PF14226 non-haem dioxygenase in morphine synthesis N-terminal ACIAD0768 PF09334 tRNA synthetases class I (M) ACIAD0768 PF01588 Putative tRNA binding domain ACIAD0769 PF03502 Nucleoside-specific channel-forming protein, Tsx ACIAD0772 PF10609 NUBPL iron-transfer P-loop NTPase ACIAD0773 PF01048 Phosphorylase superfamily ACIAD0776 PF00692 dUTPase ACIAD0782 PF03129 Anticodon binding domain ACIAD0782 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIAD0782 PF04073 Aminoacyl-tRNA editing domain ACIAD0783 PF00873 AcrB/AcrD/AcrF family ACIAD0786 PF00072 Response regulator receiver domain ACIAD0787 PF00072 Response regulator receiver domain ACIAD0788 PF01584 CheW-like domain ACIAD0789 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ACIAD0789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIAD0790 PF01627 Hpt domain ACIAD0790 PF01584 CheW-like domain ACIAD0790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD0790 PF07194 P2 response regulator binding domain ACIAD0790 PF02895 Signal transducing histidine kinase, homodimeric domain ACIAD0791 PF07687 Peptidase dimerisation domain ACIAD0791 PF01546 Peptidase family M20/M25/M40 ACIAD0794 PF04304 Protein of unknown function (DUF454) ACIAD0795 PF01476 LysM domain ACIAD0795 PF03734 L,D-transpeptidase catalytic domain ACIAD0799 PF00258 Flavodoxin ACIAD0799 PF00175 Oxidoreductase NAD-binding domain ACIAD0799 PF00667 FAD binding domain ACIAD0801 PF12805 FUSC-like inner membrane protein yccS ACIAD0802 PF07690 Major Facilitator Superfamily ACIAD0803 PF00881 Nitroreductase family ACIAD0804 PF03616 Sodium/glutamate symporter ACIAD0805 PF01235 Sodium:alanine symporter family ACIAD0806 PF01734 Patatin-like phospholipase ACIAD0808 PF01965 DJ-1/PfpI family ACIAD0809 PF05992 SbmA/BacA-like family ACIAD0813 PF03466 LysR substrate binding domain ACIAD0813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0822 PF02637 GatB domain ACIAD0822 PF02934 GatB/GatE catalytic domain ACIAD0823 PF01425 Amidase ACIAD0824 PF02686 Glu-tRNAGln amidotransferase C subunit ACIAD0826 PF04085 rod shape-determining protein MreC ACIAD0828 PF04093 rod shape-determining protein MreD ACIAD0829 PF02545 Maf-like protein ACIAD0830 PF10150 Ribonuclease E/G family ACIAD0830 PF00575 S1 RNA binding domain ACIAD0832 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ACIAD0832 PF06974 Protein of unknown function (DUF1298) ACIAD0833 PF01507 Phosphoadenosine phosphosulfate reductase family ACIAD0837 PF01207 Dihydrouridine synthase (Dus) ACIAD0839 PF00448 SRP54-type protein, GTPase domain ACIAD0839 PF02978 Signal peptide binding domain ACIAD0839 PF02881 SRP54-type protein, helical bundle domain ACIAD0840 PF03309 Type III pantothenate kinase ACIAD0841 PF03099 Biotin/lipoate A/B protein ligase family ACIAD0841 PF08279 HTH domain ACIAD0841 PF02237 Biotin protein ligase C terminal domain ACIAD0842 PF01925 Sulfite exporter TauE/SafE ACIAD0846 PF02463 RecF/RecN/SMC N terminal domain ACIAD0846 PF06470 SMC proteins Flexible Hinge Domain ACIAD0848 PF00533 BRCA1 C Terminus (BRCT) domain ACIAD0848 PF12826 Helix-hairpin-helix motif ACIAD0848 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACIAD0848 PF03120 NAD-dependent DNA ligase OB-fold domain ACIAD0848 PF01653 NAD-dependent DNA ligase adenylation domain ACIAD0852 PF00210 Ferritin-like domain ACIAD0854 PF00578 AhpC/TSA family ACIAD0855 PF12697 Alpha/beta hydrolase family ACIAD0855 PF08241 Methyltransferase domain ACIAD0856 PF04055 Radical SAM superfamily ACIAD0856 PF06968 Biotin and Thiamin Synthesis associated domain ACIAD0856 PF00202 Aminotransferase class-III ACIAD0857 PF00155 Aminotransferase class I and II ACIAD0861 PF01479 S4 domain ACIAD0861 PF00849 RNA pseudouridylate synthase ACIAD0862 PF04079 Segregation and condensation complex subunit ScpB ACIAD0863 PF02616 Segregation and condensation protein ScpA ACIAD0865 PF01300 Telomere recombination ACIAD0866 PF04315 Elongation factor P hydroxylase ACIAD0868 PF02620 Large ribosomal RNA subunit accumulation protein YceD ACIAD0869 PF01783 Ribosomal L32p protein family ACIAD0870 PF00698 Acyl transferase domain ACIAD0872 PF00550 Phosphopantetheine attachment site ACIAD0873 PF01476 LysM domain ACIAD0873 PF04972 BON domain ACIAD0875 PF03070 TENA/THI-4/PQQC family ACIAD0875 PF08543 Phosphomethylpyrimidine kinase ACIAD0875 PF02581 Thiamine monophosphate synthase ACIAD0876 PF13419 Haloacid dehalogenase-like hydrolase ACIAD0877 PF01757 Acyltransferase family ACIAD0879 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIAD0879 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIAD0881 PF00164 Ribosomal protein S12/S23 ACIAD0883 PF00177 Ribosomal protein S7p/S5e ACIAD0884 PF00679 Elongation factor G C-terminus ACIAD0884 PF03764 Elongation factor G, domain IV ACIAD0884 PF03144 Elongation factor Tu domain 2 ACIAD0884 PF14492 Elongation Factor G, domain II ACIAD0884 PF00009 Elongation factor Tu GTP binding domain ACIAD0885 PF03144 Elongation factor Tu domain 2 ACIAD0885 PF00009 Elongation factor Tu GTP binding domain ACIAD0885 PF03143 Elongation factor Tu C-terminal domain ACIAD0888 PF04377 Arginine-tRNA-protein transferase, C terminus ACIAD0888 PF04376 Arginine-tRNA-protein transferase, N terminus ACIAD0889 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACIAD0890 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD0891 PF01580 FtsK/SpoIIIE family ACIAD0891 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACIAD0891 PF17854 FtsK alpha domain ACIAD0891 PF09397 Ftsk gamma domain ACIAD0893 PF03776 Septum formation topological specificity factor MinE ACIAD0894 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACIAD0895 PF03775 Septum formation inhibitor MinC, C-terminal domain ACIAD0897 PF01553 Acyltransferase ACIAD0898 PF13488 Glycine zipper ACIAD0898 PF00691 OmpA family ACIAD0900 PF13361 UvrD-like helicase C-terminal domain ACIAD0900 PF00580 UvrD/REP helicase N-terminal domain ACIAD0901 PF00692 dUTPase ACIAD0902 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIAD0902 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIAD0902 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIAD0902 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIAD0903 PF00696 Amino acid kinase family ACIAD0905 PF13230 Glutamine amidotransferases class-II ACIAD0908 PF03658 RnfH family Ubiquitin ACIAD0909 PF04355 SmpA / OmlA family ACIAD0910 PF01475 Ferric uptake regulator family ACIAD0911 PF00437 Type II/IV secretion system protein ACIAD0912 PF00437 Type II/IV secretion system protein ACIAD0913 PF01168 Alanine racemase, N-terminal domain ACIAD0914 PF02673 Bacitracin resistance protein BacA ACIAD0917 PF00149 Calcineurin-like phosphoesterase ACIAD0917 PF12320 Type 5 capsule protein repressor C-terminal domain ACIAD0921 PF08338 Domain of unknown function (DUF1731) ACIAD0921 PF01370 NAD dependent epimerase/dehydratase family ACIAD0922 PF01266 FAD dependent oxidoreductase ACIAD0923 PF00490 Delta-aminolevulinic acid dehydratase ACIAD0924 PF03061 Thioesterase superfamily ACIAD0926 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIAD0926 PF00529 HlyD membrane-fusion protein of T1SS ACIAD0927 PF07690 Major Facilitator Superfamily ACIAD0930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACIAD0930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACIAD0933 PF05114 Protein of unknown function (DUF692) ACIAD0935 PF08281 Sigma-70, region 4 ACIAD0935 PF04542 Sigma-70 region 2 ACIAD0939 PF08479 POTRA domain, ShlB-type ACIAD0939 PF17287 POTRA domain ACIAD0939 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACIAD0940 PF05860 haemagglutination activity domain ACIAD0940 PF13332 Hemagglutinin repeat ACIAD0940 PF04829 Pre-toxin domain with VENN motif ACIAD0940 PF13018 Extended Signal Peptide of Type V secretion system ACIAD0952 PF13333 Integrase core domain ACIAD0952 PF00665 Integrase core domain ACIAD0952 PF13276 HTH-like domain ACIAD0953 PF01527 Transposase ACIAD0957 PF13333 Integrase core domain ACIAD0957 PF00665 Integrase core domain ACIAD0957 PF13276 HTH-like domain ACIAD0958 PF01527 Transposase ACIAD0960 PF00171 Aldehyde dehydrogenase family ACIAD0963 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACIAD0964 PF14572 Phosphoribosyl synthetase-associated domain ACIAD0964 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACIAD0967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD0967 PF03466 LysR substrate binding domain ACIAD0968 PF07729 FCD domain ACIAD0968 PF00392 Bacterial regulatory proteins, gntR family ACIAD0969 PF00005 ABC transporter ACIAD0970 PF01032 FecCD transport family ACIAD0973 PF07715 TonB-dependent Receptor Plug Domain ACIAD0973 PF00593 TonB dependent receptor ACIAD0979 PF00175 Oxidoreductase NAD-binding domain ACIAD0979 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD0980 PF00355 Rieske [2Fe-2S] domain ACIAD0982 PF07690 Major Facilitator Superfamily ACIAD0984 PF01494 FAD binding domain ACIAD0985 PF01614 Bacterial transcriptional regulator ACIAD0985 PF09339 IclR helix-turn-helix domain ACIAD0986 PF00355 Rieske [2Fe-2S] domain ACIAD0988 PF00355 Rieske [2Fe-2S] domain ACIAD0991 PF14759 Reductase C-terminal ACIAD0991 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD0992 PF07690 Major Facilitator Superfamily ACIAD0994 PF00561 alpha/beta hydrolase fold ACIAD0997 PF01958 Domain of unknown function DUF108 ACIAD0997 PF03447 Homoserine dehydrogenase, NAD binding domain ACIAD0998 PF00171 Aldehyde dehydrogenase family ACIAD0999 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIAD0999 PF00205 Thiamine pyrophosphate enzyme, central domain ACIAD0999 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIAD1003 PF00593 TonB dependent receptor ACIAD1003 PF07715 TonB-dependent Receptor Plug Domain ACIAD1007 PF06039 Malate:quinone oxidoreductase (Mqo) ACIAD1008 PF05199 GMC oxidoreductase ACIAD1008 PF00732 GMC oxidoreductase ACIAD1009 PF00171 Aldehyde dehydrogenase family ACIAD1010 PF13977 BetI-type transcriptional repressor, C-terminal ACIAD1010 PF00440 Bacterial regulatory proteins, tetR family ACIAD1011 PF02028 BCCT, betaine/carnitine/choline family transporter ACIAD1012 PF02028 BCCT, betaine/carnitine/choline family transporter ACIAD1015 PF04055 Radical SAM superfamily ACIAD1017 PF00676 Dehydrogenase E1 component ACIAD1018 PF02780 Transketolase, C-terminal domain ACIAD1018 PF02779 Transketolase, pyrimidine binding domain ACIAD1019 PF02817 e3 binding domain ACIAD1019 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIAD1019 PF00364 Biotin-requiring enzyme ACIAD1020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIAD1021 PF00107 Zinc-binding dehydrogenase ACIAD1021 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1022 PF00106 short chain dehydrogenase ACIAD1023 PF03061 Thioesterase superfamily ACIAD1025 PF07683 Cobalamin synthesis protein cobW C-terminal domain ACIAD1025 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIAD1026 PF00375 Sodium:dicarboxylate symporter family ACIAD1027 PF07152 YaeQ protein ACIAD1028 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD1029 PF01522 Polysaccharide deacetylase ACIAD1029 PF14883 Hypothetical glycosyl hydrolase family 13 ACIAD1030 PF00535 Glycosyl transferase family 2 ACIAD1033 PF04973 Nicotinamide mononucleotide transporter ACIAD1035 PF02230 Phospholipase/Carboxylesterase ACIAD1036 PF00083 Sugar (and other) transporter ACIAD1039 PF01327 Polypeptide deformylase ACIAD1040 PF04960 Glutaminase ACIAD1042 PF07690 Major Facilitator Superfamily ACIAD1045 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACIAD1045 PF02607 B12 binding domain ACIAD1045 PF02310 B12 binding domain ACIAD1045 PF02574 Homocysteine S-methyltransferase ACIAD1045 PF00809 Pterin binding enzyme ACIAD1047 PF01384 Phosphate transporter family ACIAD1048 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD1052 PF01521 Iron-sulphur cluster biosynthesis ACIAD1052 PF01106 NifU-like domain ACIAD1053 PF07715 TonB-dependent Receptor Plug Domain ACIAD1053 PF00593 TonB dependent receptor ACIAD1054 PF00593 TonB dependent receptor ACIAD1054 PF07715 TonB-dependent Receptor Plug Domain ACIAD1056 PF00484 Carbonic anhydrase ACIAD1057 PF13472 GDSL-like Lipase/Acylhydrolase family ACIAD1058 PF00005 ABC transporter ACIAD1060 PF01694 Rhomboid family ACIAD1061 PF00912 Transglycosylase ACIAD1062 PF17941 Polyphosphate kinase C-terminal domain 1 ACIAD1062 PF13090 Polyphosphate kinase C-terminal domain 2 ACIAD1062 PF13089 Polyphosphate kinase N-terminal domain ACIAD1062 PF02503 Polyphosphate kinase middle domain ACIAD1063 PF03466 LysR substrate binding domain ACIAD1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1064 PF00561 alpha/beta hydrolase fold ACIAD1065 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1065 PF18113 Rubredoxin binding C-terminal domain ACIAD1066 PF00301 Rubredoxin ACIAD1069 PF01336 OB-fold nucleic acid binding domain ACIAD1069 PF00152 tRNA synthetases class II (D, K and N) ACIAD1070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIAD1070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIAD1071 PF07685 CobB/CobQ-like glutamine amidotransferase domain ACIAD1071 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACIAD1072 PF01507 Phosphoadenosine phosphosulfate reductase family ACIAD1073 PF00009 Elongation factor Tu GTP binding domain ACIAD1074 PF03600 Citrate transporter ACIAD1081 PF03471 Transporter associated domain ACIAD1081 PF01595 Cyclin M transmembrane N-terminal domain ACIAD1081 PF00571 CBS domain ACIAD1082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1082 PF03466 LysR substrate binding domain ACIAD1084 PF00463 Isocitrate lyase family ACIAD1088 PF01774 UreD urease accessory protein ACIAD1089 PF00547 Urease, gamma subunit ACIAD1090 PF00699 Urease beta subunit ACIAD1091 PF00449 Urease alpha-subunit, N-terminal domain ACIAD1091 PF01979 Amidohydrolase family ACIAD1093 PF02814 UreE urease accessory protein, N-terminal domain ACIAD1093 PF05194 UreE urease accessory protein, C-terminal domain ACIAD1094 PF01730 UreF ACIAD1095 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIAD1101 PF03717 Penicillin-binding Protein dimerisation domain ACIAD1101 PF00905 Penicillin binding protein transpeptidase domain ACIAD1105 PF05191 Adenylate kinase, active site lid ACIAD1108 PF00633 Helix-hairpin-helix motif ACIAD1108 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIAD1108 PF10576 Iron-sulfur binding domain of endonuclease III ACIAD1109 PF04060 Putative Fe-S cluster ACIAD1110 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACIAD1110 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACIAD1112 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACIAD1113 PF02590 Predicted SPOUT methyltransferase ACIAD1115 PF05362 Lon protease (S16) C-terminal proteolytic domain ACIAD1115 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD1115 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACIAD1116 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACIAD1117 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ACIAD1119 PF00535 Glycosyl transferase family 2 ACIAD1123 PF05164 Cell division protein ZapA ACIAD1125 PF03695 Uncharacterised protein family (UPF0149) ACIAD1126 PF00557 Metallopeptidase family M24 ACIAD1126 PF05195 Aminopeptidase P, N-terminal domain ACIAD1127 PF01494 FAD binding domain ACIAD1128 PF01494 FAD binding domain ACIAD1130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIAD1131 PF04348 LppC putative lipoprotein ACIAD1132 PF02021 Uncharacterised protein family UPF0102 ACIAD1133 PF04972 BON domain ACIAD1135 PF00293 NUDIX domain ACIAD1135 PF09297 NADH pyrophosphatase zinc ribbon domain ACIAD1137 PF00929 Exonuclease ACIAD1138 PF01464 Transglycosylase SLT domain ACIAD1138 PF01476 LysM domain ACIAD1138 PF01476 LysM domain ACIAD1138 PF01464 Transglycosylase SLT domain ACIAD1139 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACIAD1140 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1141 PF12911 N-terminal TM domain of oligopeptide transport permease C ACIAD1141 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1142 PF00005 ABC transporter ACIAD1142 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACIAD1143 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD1143 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1147 PF00324 Amino acid permease ACIAD1149 PF00929 Exonuclease ACIAD1150 PF01979 Amidohydrolase family ACIAD1151 PF00764 Arginosuccinate synthase ACIAD1152 PF03466 LysR substrate binding domain ACIAD1152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1154 PF00892 EamA-like transporter family ACIAD1155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD1155 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1157 PF13533 Biotin-lipoyl like ACIAD1158 PF00873 AcrB/AcrD/AcrF family ACIAD1159 PF00873 AcrB/AcrD/AcrF family ACIAD1160 PF02321 Outer membrane efflux protein ACIAD1161 PF08281 Sigma-70, region 4 ACIAD1161 PF04542 Sigma-70 region 2 ACIAD1163 PF07715 TonB-dependent Receptor Plug Domain ACIAD1163 PF00593 TonB dependent receptor ACIAD1164 PF01965 DJ-1/PfpI family ACIAD1165 PF00196 Bacterial regulatory proteins, luxR family ACIAD1165 PF03472 Autoinducer binding domain ACIAD1168 PF00324 Amino acid permease ACIAD1172 PF01323 DSBA-like thioredoxin domain ACIAD1175 PF02350 UDP-N-acetylglucosamine 2-epimerase ACIAD1182 PF03441 FAD binding domain of DNA photolyase ACIAD1182 PF00875 DNA photolyase ACIAD1183 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIAD1184 PF07943 Penicillin-binding protein 5, C-terminal domain ACIAD1184 PF00768 D-alanyl-D-alanine carboxypeptidase ACIAD1187 PF03971 Monomeric isocitrate dehydrogenase ACIAD1188 PF00576 HIUase/Transthyretin family ACIAD1189 PF00849 RNA pseudouridylate synthase ACIAD1190 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIAD1192 PF02567 Phenazine biosynthesis-like protein ACIAD1193 PF00654 Voltage gated chloride channel ACIAD1194 PF00675 Insulinase (Peptidase family M16) ACIAD1194 PF05193 Peptidase M16 inactive domain ACIAD1200 PF02581 Thiamine monophosphate synthase ACIAD1201 PF00202 Aminotransferase class-III ACIAD1202 PF03928 Haem-degrading ACIAD1203 PF00849 RNA pseudouridylate synthase ACIAD1204 PF18339 RapA N-terminal Tudor like domain 1 ACIAD1204 PF00176 SNF2 family N-terminal domain ACIAD1204 PF12137 RNA polymerase recycling family C-terminal ACIAD1204 PF00271 Helicase conserved C-terminal domain ACIAD1204 PF18337 RapA N-terminal Tudor like domain ACIAD1205 PF00210 Ferritin-like domain ACIAD1206 PF00440 Bacterial regulatory proteins, tetR family ACIAD1207 PF00970 Oxidoreductase FAD-binding domain ACIAD1207 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD1207 PF00175 Oxidoreductase NAD-binding domain ACIAD1208 PF00487 Fatty acid desaturase ACIAD1210 PF00202 Aminotransferase class-III ACIAD1211 PF00282 Pyridoxal-dependent decarboxylase conserved domain ACIAD1212 PF12849 PBP superfamily domain ACIAD1213 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1214 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1215 PF00005 ABC transporter ACIAD1216 PF01343 Peptidase family S49 ACIAD1216 PF08496 Peptidase family S49 N-terminal ACIAD1219 PF08328 Adenylosuccinate lyase C-terminal ACIAD1219 PF00206 Lyase ACIAD1220 PF04356 Protein of unknown function (DUF489) ACIAD1222 PF00293 NUDIX domain ACIAD1224 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD1225 PF00768 D-alanyl-D-alanine carboxypeptidase ACIAD1225 PF07943 Penicillin-binding protein 5, C-terminal domain ACIAD1227 PF01975 Survival protein SurE ACIAD1229 PF01551 Peptidase family M23 ACIAD1229 PF01476 LysM domain ACIAD1230 PF03466 LysR substrate binding domain ACIAD1230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1231 PF00202 Aminotransferase class-III ACIAD1232 PF00462 Glutaredoxin ACIAD1234 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1234 PF13192 Thioredoxin domain ACIAD1238 PF00582 Universal stress protein family ACIAD1240 PF00593 TonB dependent receptor ACIAD1240 PF07715 TonB-dependent Receptor Plug Domain ACIAD1241 PF01740 STAS domain ACIAD1241 PF00916 Sulfate permease family ACIAD1243 PF00860 Permease family ACIAD1245 PF00962 Adenosine/AMP deaminase ACIAD1246 PF01292 Prokaryotic cytochrome b561 ACIAD1248 PF01351 Ribonuclease HII ACIAD1249 PF13276 HTH-like domain ACIAD1249 PF00665 Integrase core domain ACIAD1249 PF13333 Integrase core domain ACIAD1250 PF01527 Transposase ACIAD1251 PF02599 Global regulator protein family ACIAD1252 PF01842 ACT domain ACIAD1252 PF00696 Amino acid kinase family ACIAD1252 PF13840 ACT domain ACIAD1253 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIAD1253 PF01411 tRNA synthetases class II (A) ACIAD1253 PF02272 DHHA1 domain ACIAD1255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIAD1255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIAD1257 PF13393 Histidyl-tRNA synthetase ACIAD1258 PF00709 Adenylosuccinate synthetase ACIAD1261 PF00248 Aldo/keto reductase family ACIAD1262 PF00027 Cyclic nucleotide-binding domain ACIAD1262 PF13545 Crp-like helix-turn-helix domain ACIAD1263 PF02566 OsmC-like protein ACIAD1265 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD1265 PF07724 AAA domain (Cdc48 subfamily) ACIAD1265 PF17871 AAA lid domain ACIAD1265 PF10431 C-terminal, D2-small domain, of ClpB protein ACIAD1265 PF02861 Clp amino terminal domain, pathogenicity island component ACIAD1266 PF00920 Dehydratase family ACIAD1268 PF10672 S-adenosylmethionine-dependent methyltransferase ACIAD1268 PF02926 THUMP domain ACIAD1268 PF01170 Putative RNA methylase family UPF0020 ACIAD1270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIAD1270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIAD1271 PF01979 Amidohydrolase family ACIAD1274 PF13649 Methyltransferase domain ACIAD1276 PF13520 Amino acid permease ACIAD1279 PF08443 RimK-like ATP-grasp domain ACIAD1279 PF08245 Mur ligase middle domain ACIAD1279 PF02875 Mur ligase family, glutamate ligase domain ACIAD1280 PF03575 Peptidase family S51 ACIAD1284 PF00202 Aminotransferase class-III ACIAD1286 PF04958 Arginine N-succinyltransferase beta subunit ACIAD1287 PF00171 Aldehyde dehydrogenase family ACIAD1288 PF04996 Succinylarginine dihydrolase ACIAD1289 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ACIAD1292 PF01966 HD domain ACIAD1293 PF00596 Class II Aldolase and Adducin N-terminal domain ACIAD1294 PF03466 LysR substrate binding domain ACIAD1294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1297 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIAD1298 PF00005 ABC transporter ACIAD1299 PF00491 Arginase family ACIAD1301 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD1301 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD1302 PF02390 Putative methyltransferase ACIAD1305 PF00043 Glutathione S-transferase, C-terminal domain ACIAD1305 PF02798 Glutathione S-transferase, N-terminal domain ACIAD1308 PF05690 Thiazole biosynthesis protein ThiG ACIAD1310 PF04241 Protein of unknown function (DUF423) ACIAD1311 PF00140 Sigma-70 factor, region 1.2 ACIAD1311 PF04542 Sigma-70 region 2 ACIAD1311 PF04545 Sigma-70, region 4 ACIAD1313 PF00313 'Cold-shock' DNA-binding domain ACIAD1314 PF00270 DEAD/DEAH box helicase ACIAD1314 PF00271 Helicase conserved C-terminal domain ACIAD1317 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACIAD1317 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACIAD1321 PF01180 Dihydroorotate dehydrogenase ACIAD1323 PF00156 Phosphoribosyl transferase domain ACIAD1327 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD1327 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD1328 PF01435 Peptidase family M48 ACIAD1331 PF01165 Ribosomal protein S21 ACIAD1332 PF00814 Glycoprotease family ACIAD1336 PF03793 PASTA domain ACIAD1336 PF00069 Protein kinase domain ACIAD1339 PF00375 Sodium:dicarboxylate symporter family ACIAD1343 PF00324 Amino acid permease ACIAD1344 PF01037 Lrp/AsnC ligand binding domain ACIAD1346 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIAD1346 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIAD1347 PF01784 NIF3 (NGG1p interacting factor 3) ACIAD1348 PF13180 PDZ domain ACIAD1349 PF07290 Protein of unknown function (DUF1449) ACIAD1351 PF00294 pfkB family carbohydrate kinase ACIAD1353 PF08367 Peptidase M16C associated ACIAD1353 PF00675 Insulinase (Peptidase family M16) ACIAD1353 PF05193 Peptidase M16 inactive domain ACIAD1354 PF02253 Phospholipase A1 ACIAD1355 PF02386 Cation transport protein ACIAD1356 PF02080 TrkA-C domain ACIAD1356 PF02254 TrkA-N domain ACIAD1357 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD1357 PF00585 C-terminal regulatory domain of Threonine dehydratase ACIAD1358 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ACIAD1360 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIAD1360 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIAD1362 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACIAD1363 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD1363 PF17871 AAA lid domain ACIAD1363 PF02861 Clp amino terminal domain, pathogenicity island component ACIAD1363 PF10431 C-terminal, D2-small domain, of ClpB protein ACIAD1363 PF07724 AAA domain (Cdc48 subfamily) ACIAD1364 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACIAD1365 PF07859 alpha/beta hydrolase fold ACIAD1365 PF13472 GDSL-like Lipase/Acylhydrolase family ACIAD1366 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIAD1366 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIAD1367 PF00440 Bacterial regulatory proteins, tetR family ACIAD1368 PF02954 Bacterial regulatory protein, Fis family ACIAD1368 PF00158 Sigma-54 interaction domain ACIAD1368 PF00072 Response regulator receiver domain ACIAD1369 PF00512 His Kinase A (phospho-acceptor) domain ACIAD1369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD1369 PF00989 PAS fold ACIAD1371 PF18693 TRAM domain ACIAD1371 PF04055 Radical SAM superfamily ACIAD1371 PF00919 Uncharacterized protein family UPF0004 ACIAD1372 PF00696 Amino acid kinase family ACIAD1373 PF01765 Ribosome recycling factor ACIAD1374 PF01255 Putative undecaprenyl diphosphate synthase ACIAD1376 PF13288 DXP reductoisomerase C-terminal domain ACIAD1376 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACIAD1376 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACIAD1377 PF13180 PDZ domain ACIAD1377 PF02163 Peptidase family M50 ACIAD1377 PF17820 PDZ domain ACIAD1378 PF01103 Surface antigen ACIAD1378 PF07244 Surface antigen variable number repeat ACIAD1380 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACIAD1380 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD1381 PF07977 FabA-like domain ACIAD1382 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD1382 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACIAD1384 PF02631 RecX family ACIAD1385 PF00154 recA bacterial DNA recombination protein ACIAD1386 PF01479 S4 domain ACIAD1387 PF00459 Inositol monophosphatase family ACIAD1389 PF01649 Ribosomal protein S20 ACIAD1391 PF03737 Aldolase/RraA ACIAD1395 PF02559 CarD-like/TRCF domain ACIAD1395 PF00270 DEAD/DEAH box helicase ACIAD1395 PF03461 TRCF domain ACIAD1395 PF00271 Helicase conserved C-terminal domain ACIAD1395 PF17757 UvrB interaction domain ACIAD1397 PF00211 Adenylate and Guanylate cyclase catalytic domain ACIAD1398 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD1399 PF00012 Hsp70 protein ACIAD1400 PF00226 DnaJ domain ACIAD1400 PF07743 HSCB C-terminal oligomerisation domain ACIAD1402 PF01521 Iron-sulphur cluster biosynthesis ACIAD1403 PF01592 NifU-like N terminal domain ACIAD1404 PF00266 Aminotransferase class-V ACIAD1405 PF02082 Transcriptional regulator ACIAD1408 PF00216 Bacterial DNA-binding protein ACIAD1410 PF12852 Cupin ACIAD1410 PF12833 Helix-turn-helix domain ACIAD1411 PF00487 Fatty acid desaturase ACIAD1412 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1412 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1412 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1413 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1413 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1413 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1414 PF03109 ABC1 family ACIAD1417 PF13520 Amino acid permease ACIAD1418 PF02574 Homocysteine S-methyltransferase ACIAD1419 PF01979 Amidohydrolase family ACIAD1421 PF00512 His Kinase A (phospho-acceptor) domain ACIAD1421 PF08521 Two-component sensor kinase N-terminal ACIAD1421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD1422 PF00486 Transcriptional regulatory protein, C terminal ACIAD1422 PF00072 Response regulator receiver domain ACIAD1423 PF00884 Sulfatase ACIAD1423 PF08019 Phosphoethanolamine transferase EptA/EptB ACIAD1424 PF01494 FAD binding domain ACIAD1425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1425 PF03466 LysR substrate binding domain ACIAD1428 PF07859 alpha/beta hydrolase fold ACIAD1429 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1429 PF00107 Zinc-binding dehydrogenase ACIAD1430 PF00171 Aldehyde dehydrogenase family ACIAD1431 PF02954 Bacterial regulatory protein, Fis family ACIAD1431 PF01590 GAF domain ACIAD1431 PF00158 Sigma-54 interaction domain ACIAD1433 PF03573 outer membrane porin, OprD family ACIAD1434 PF07690 Major Facilitator Superfamily ACIAD1435 PF03466 LysR substrate binding domain ACIAD1435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1436 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ACIAD1436 PF00355 Rieske [2Fe-2S] domain ACIAD1437 PF00866 Ring hydroxylating beta subunit ACIAD1438 PF00970 Oxidoreductase FAD-binding domain ACIAD1438 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD1438 PF00175 Oxidoreductase NAD-binding domain ACIAD1439 PF00106 short chain dehydrogenase ACIAD1440 PF03594 Benzoate membrane transport protein ACIAD1442 PF04444 Catechol dioxygenase N terminus ACIAD1442 PF00775 Dioxygenase ACIAD1443 PF01926 50S ribosome-binding GTPase ACIAD1444 PF01926 50S ribosome-binding GTPase ACIAD1445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1445 PF03466 LysR substrate binding domain ACIAD1446 PF13378 Enolase C-terminal domain-like ACIAD1446 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACIAD1447 PF02426 Muconolactone delta-isomerase ACIAD1448 PF01144 Coenzyme A transferase ACIAD1449 PF01144 Coenzyme A transferase ACIAD1450 PF02803 Thiolase, C-terminal domain ACIAD1450 PF00108 Thiolase, N-terminal domain ACIAD1451 PF12146 Serine aminopeptidase, S33 ACIAD1452 PF00202 Aminotransferase class-III ACIAD1453 PF01638 HxlR-like helix-turn-helix ACIAD1454 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1454 PF00107 Zinc-binding dehydrogenase ACIAD1455 PF12833 Helix-turn-helix domain ACIAD1455 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ACIAD1458 PF13520 Amino acid permease ACIAD1460 PF07715 TonB-dependent Receptor Plug Domain ACIAD1460 PF00593 TonB dependent receptor ACIAD1461 PF01062 Bestrophin, RFP-TM, chloride channel ACIAD1462 PF07729 FCD domain ACIAD1462 PF00392 Bacterial regulatory proteins, gntR family ACIAD1463 PF09084 NMT1/THI5 like ACIAD1464 PF00005 ABC transporter ACIAD1465 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1467 PF01979 Amidohydrolase family ACIAD1469 PF08281 Sigma-70, region 4 ACIAD1469 PF04542 Sigma-70 region 2 ACIAD1472 PF07715 TonB-dependent Receptor Plug Domain ACIAD1472 PF00593 TonB dependent receptor ACIAD1478 PF01126 Heme oxygenase ACIAD1481 PF01406 tRNA synthetases class I (C) catalytic domain ACIAD1481 PF09190 DALR domain ACIAD1482 PF01380 SIS domain ACIAD1482 PF00571 CBS domain ACIAD1485 PF03968 OstA-like protein ACIAD1486 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACIAD1486 PF00005 ABC transporter ACIAD1487 PF02321 Outer membrane efflux protein ACIAD1488 PF00005 ABC transporter ACIAD1488 PF00664 ABC transporter transmembrane region ACIAD1488 PF03412 Peptidase C39 family ACIAD1490 PF01205 Uncharacterized protein family UPF0029 ACIAD1495 PF01596 O-methyltransferase ACIAD1498 PF11953 Domain of unknown function (DUF3470) ACIAD1498 PF00037 4Fe-4S binding domain ACIAD1500 PF05190 MutS family domain IV ACIAD1500 PF05188 MutS domain II ACIAD1500 PF00488 MutS domain V ACIAD1500 PF05192 MutS domain III ACIAD1500 PF01624 MutS domain I ACIAD1505 PF00296 Luciferase-like monooxygenase ACIAD1506 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACIAD1507 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1508 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1508 PF12911 N-terminal TM domain of oligopeptide transport permease C ACIAD1509 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACIAD1509 PF00005 ABC transporter ACIAD1510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1510 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1510 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1514 PF00664 ABC transporter transmembrane region ACIAD1514 PF00005 ABC transporter ACIAD1515 PF00005 ABC transporter ACIAD1515 PF00664 ABC transporter transmembrane region ACIAD1516 PF00593 TonB dependent receptor ACIAD1516 PF07715 TonB-dependent Receptor Plug Domain ACIAD1518 PF00296 Luciferase-like monooxygenase ACIAD1519 PF00158 Sigma-54 interaction domain ACIAD1520 PF00902 Sec-independent protein translocase protein (TatC) ACIAD1521 PF02416 mttA/Hcf106 family ACIAD1522 PF02416 mttA/Hcf106 family ACIAD1523 PF00005 ABC transporter ACIAD1524 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1525 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1526 PF09084 NMT1/THI5 like ACIAD1527 PF00296 Luciferase-like monooxygenase ACIAD1528 PF03544 Gram-negative bacterial TonB protein C-terminal ACIAD1529 PF01618 MotA/TolQ/ExbB proton channel family ACIAD1530 PF02472 Biopolymer transport protein ExbD/TolR ACIAD1531 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACIAD1534 PF07715 TonB-dependent Receptor Plug Domain ACIAD1534 PF00593 TonB dependent receptor ACIAD1535 PF00296 Luciferase-like monooxygenase ACIAD1537 PF14537 Cytochrome c3 ACIAD1537 PF00890 FAD binding domain ACIAD1539 PF03466 LysR substrate binding domain ACIAD1539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1541 PF07690 Major Facilitator Superfamily ACIAD1545 PF01638 HxlR-like helix-turn-helix ACIAD1548 PF13417 Glutathione S-transferase, N-terminal domain ACIAD1559 PF01047 MarR family ACIAD1561 PF01613 Flavin reductase like domain ACIAD1565 PF00106 short chain dehydrogenase ACIAD1566 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1566 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1566 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1568 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1569 PF00108 Thiolase, N-terminal domain ACIAD1569 PF02803 Thiolase, C-terminal domain ACIAD1570 PF03060 Nitronate monooxygenase ACIAD1571 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1572 PF00501 AMP-binding enzyme ACIAD1572 PF13193 AMP-binding enzyme C-terminal domain ACIAD1575 PF00067 Cytochrome P450 ACIAD1576 PF12833 Helix-turn-helix domain ACIAD1577 PF00171 Aldehyde dehydrogenase family ACIAD1578 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1578 PF00107 Zinc-binding dehydrogenase ACIAD1579 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD1580 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1580 PF14759 Reductase C-terminal ACIAD1582 PF00266 Aminotransferase class-V ACIAD1584 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD1585 PF00581 Rhodanese-like domain ACIAD1586 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1587 PF00005 ABC transporter ACIAD1588 PF03544 Gram-negative bacterial TonB protein C-terminal ACIAD1589 PF01618 MotA/TolQ/ExbB proton channel family ACIAD1590 PF02472 Biopolymer transport protein ExbD/TolR ACIAD1592 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ACIAD1594 PF07715 TonB-dependent Receptor Plug Domain ACIAD1594 PF00593 TonB dependent receptor ACIAD1596 PF00248 Aldo/keto reductase family ACIAD1597 PF07715 TonB-dependent Receptor Plug Domain ACIAD1597 PF00593 TonB dependent receptor ACIAD1598 PF00884 Sulfatase ACIAD1599 PF00027 Cyclic nucleotide-binding domain ACIAD1599 PF13545 Crp-like helix-turn-helix domain ACIAD1600 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ACIAD1602 PF03466 LysR substrate binding domain ACIAD1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1604 PF00171 Aldehyde dehydrogenase family ACIAD1605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIAD1605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACIAD1606 PF00501 AMP-binding enzyme ACIAD1606 PF13193 AMP-binding enzyme C-terminal domain ACIAD1607 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1607 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1607 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1608 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1611 PF13193 AMP-binding enzyme C-terminal domain ACIAD1611 PF00501 AMP-binding enzyme ACIAD1612 PF00108 Thiolase, N-terminal domain ACIAD1612 PF02803 Thiolase, C-terminal domain ACIAD1613 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1613 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1613 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1614 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIAD1614 PF07683 Cobalamin synthesis protein cobW C-terminal domain ACIAD1615 PF02211 Nitrile hydratase beta subunit ACIAD1616 PF02979 Nitrile hydratase, alpha chain ACIAD1618 PF01425 Amidase ACIAD1624 PF13185 GAF domain ACIAD1624 PF02954 Bacterial regulatory protein, Fis family ACIAD1624 PF00158 Sigma-54 interaction domain ACIAD1625 PF01925 Sulfite exporter TauE/SafE ACIAD1633 PF08521 Two-component sensor kinase N-terminal ACIAD1633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD1633 PF00512 His Kinase A (phospho-acceptor) domain ACIAD1634 PF00072 Response regulator receiver domain ACIAD1634 PF00486 Transcriptional regulatory protein, C terminal ACIAD1638 PF08671 Anti-repressor SinI ACIAD1638 PF01381 Helix-turn-helix ACIAD1639 PF05658 Head domain of trimeric autotransporter adhesin ACIAD1639 PF05662 Coiled stalk of trimeric autotransporter adhesin ACIAD1639 PF13018 Extended Signal Peptide of Type V secretion system ACIAD1639 PF03895 YadA-like membrane anchor domain ACIAD1640 PF00691 OmpA family ACIAD1640 PF05736 OprF membrane domain ACIAD1642 PF02673 Bacitracin resistance protein BacA ACIAD1645 PF05958 tRNA (Uracil-5-)-methyltransferase ACIAD1646 PF01619 Proline dehydrogenase ACIAD1646 PF00171 Aldehyde dehydrogenase family ACIAD1646 PF14850 DNA-binding domain of Proline dehydrogenase ACIAD1646 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACIAD1648 PF01037 Lrp/AsnC ligand binding domain ACIAD1649 PF00474 Sodium:solute symporter family ACIAD1650 PF02146 Sir2 family ACIAD1651 PF00083 Sugar (and other) transporter ACIAD1652 PF00561 alpha/beta hydrolase fold ACIAD1654 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1654 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD1656 PF03466 LysR substrate binding domain ACIAD1656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1657 PF13291 ACT domain ACIAD1657 PF02824 TGS domain ACIAD1657 PF04607 Region found in RelA / SpoT proteins ACIAD1659 PF03466 LysR substrate binding domain ACIAD1659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1660 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1662 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD1667 PF00782 Dual specificity phosphatase, catalytic domain ACIAD1668 PF12146 Serine aminopeptidase, S33 ACIAD1668 PF12147 Putative methyltransferase ACIAD1669 PF01066 CDP-alcohol phosphatidyltransferase ACIAD1670 PF04073 Aminoacyl-tRNA editing domain ACIAD1672 PF13419 Haloacid dehalogenase-like hydrolase ACIAD1674 PF03788 LrgA family ACIAD1675 PF03466 LysR substrate binding domain ACIAD1675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1676 PF04143 Sulphur transport ACIAD1678 PF00753 Metallo-beta-lactamase superfamily ACIAD1681 PF07690 Major Facilitator Superfamily ACIAD1683 PF02515 CoA-transferase family III ACIAD1684 PF09339 IclR helix-turn-helix domain ACIAD1685 PF07690 Major Facilitator Superfamily ACIAD1687 PF02515 CoA-transferase family III ACIAD1688 PF09339 IclR helix-turn-helix domain ACIAD1689 PF02803 Thiolase, C-terminal domain ACIAD1689 PF00108 Thiolase, N-terminal domain ACIAD1690 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ACIAD1690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACIAD1690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACIAD1692 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1693 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1693 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1693 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1694 PF07690 Major Facilitator Superfamily ACIAD1695 PF01144 Coenzyme A transferase ACIAD1696 PF01144 Coenzyme A transferase ACIAD1698 PF07690 Major Facilitator Superfamily ACIAD1700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1700 PF12806 Acetyl-CoA dehydrogenase C-terminal like ACIAD1700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1700 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1701 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1702 PF01614 Bacterial transcriptional regulator ACIAD1702 PF09339 IclR helix-turn-helix domain ACIAD1704 PF01144 Coenzyme A transferase ACIAD1705 PF01144 Coenzyme A transferase ACIAD1706 PF00108 Thiolase, N-terminal domain ACIAD1706 PF02803 Thiolase, C-terminal domain ACIAD1707 PF10397 Adenylosuccinate lyase C-terminus ACIAD1707 PF00206 Lyase ACIAD1708 PF00561 alpha/beta hydrolase fold ACIAD1709 PF07690 Major Facilitator Superfamily ACIAD1710 PF02627 Carboxymuconolactone decarboxylase family ACIAD1711 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ACIAD1711 PF00775 Dioxygenase ACIAD1712 PF00775 Dioxygenase ACIAD1713 PF01487 Type I 3-dehydroquinase ACIAD1714 PF05048 Periplasmic copper-binding protein (NosD) ACIAD1715 PF04966 Carbohydrate-selective porin, OprB family ACIAD1716 PF01011 PQQ enzyme repeat ACIAD1716 PF13360 PQQ-like domain ACIAD1718 PF09339 IclR helix-turn-helix domain ACIAD1718 PF01614 Bacterial transcriptional regulator ACIAD1719 PF01494 FAD binding domain ACIAD1720 PF07519 Tannase and feruloyl esterase ACIAD1722 PF03573 outer membrane porin, OprD family ACIAD1723 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1723 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1723 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1724 PF00501 AMP-binding enzyme ACIAD1724 PF13193 AMP-binding enzyme C-terminal domain ACIAD1725 PF00171 Aldehyde dehydrogenase family ACIAD1726 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1727 PF07690 Major Facilitator Superfamily ACIAD1729 PF17932 Tetracyclin repressor-like, C-terminal domain ACIAD1729 PF00440 Bacterial regulatory proteins, tetR family ACIAD1731 PF00106 short chain dehydrogenase ACIAD1733 PF00743 Flavin-binding monooxygenase-like ACIAD1734 PF04072 Leucine carboxyl methyltransferase ACIAD1736 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIAD1736 PF02785 Biotin carboxylase C-terminal domain ACIAD1736 PF00289 Biotin carboxylase, N-terminal domain ACIAD1737 PF00364 Biotin-requiring enzyme ACIAD1738 PF01220 Dehydroquinase class II ACIAD1740 PF02649 Type I GTP cyclohydrolase folE2 ACIAD1741 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIAD1741 PF07683 Cobalamin synthesis protein cobW C-terminal domain ACIAD1743 PF08659 KR domain ACIAD1743 PF14765 Polyketide synthase dehydratase ACIAD1743 PF00698 Acyl transferase domain ACIAD1743 PF16197 Ketoacyl-synthetase C-terminal extension ACIAD1743 PF00107 Zinc-binding dehydrogenase ACIAD1743 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIAD1743 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIAD1743 PF00550 Phosphopantetheine attachment site ACIAD1743 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1744 PF10415 Fumarase C C-terminus ACIAD1744 PF00206 Lyase ACIAD1745 PF03466 LysR substrate binding domain ACIAD1745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1749 PF02322 Cytochrome bd terminal oxidase subunit II ACIAD1750 PF01654 Cytochrome bd terminal oxidase subunit I ACIAD1753 PF16957 Malonate decarboxylase, alpha subunit, transporter ACIAD1754 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ACIAD1755 PF06857 Malonate decarboxylase delta subunit (MdcD) ACIAD1756 PF01039 Carboxyl transferase domain ACIAD1758 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG ACIAD1759 PF00698 Acyl transferase domain ACIAD1762 PF03466 LysR substrate binding domain ACIAD1762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1763 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD1764 PF07715 TonB-dependent Receptor Plug Domain ACIAD1764 PF00593 TonB dependent receptor ACIAD1766 PF02653 Branched-chain amino acid transport system / permease component ACIAD1768 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACIAD1768 PF00005 ABC transporter ACIAD1769 PF00005 ABC transporter ACIAD1773 PF07690 Major Facilitator Superfamily ACIAD1774 PF00982 Glycosyltransferase family 20 ACIAD1775 PF02358 Trehalose-phosphatase ACIAD1778 PF08281 Sigma-70, region 4 ACIAD1778 PF04542 Sigma-70 region 2 ACIAD1780 PF07715 TonB-dependent Receptor Plug Domain ACIAD1780 PF00593 TonB dependent receptor ACIAD1780 PF07660 Secretin and TonB N terminus short domain ACIAD1782 PF17941 Polyphosphate kinase C-terminal domain 1 ACIAD1782 PF13089 Polyphosphate kinase N-terminal domain ACIAD1782 PF02503 Polyphosphate kinase middle domain ACIAD1782 PF13090 Polyphosphate kinase C-terminal domain 2 ACIAD1787 PF00313 'Cold-shock' DNA-binding domain ACIAD1788 PF04717 Type VI secretion system, phage-baseplate injector ACIAD1791 PF13276 HTH-like domain ACIAD1791 PF13333 Integrase core domain ACIAD1791 PF00665 Integrase core domain ACIAD1792 PF01527 Transposase ACIAD1798 PF01757 Acyltransferase family ACIAD1800 PF01226 Formate/nitrite transporter ACIAD1805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACIAD1808 PF01494 FAD binding domain ACIAD1812 PF04199 Putative cyclase ACIAD1815 PF07690 Major Facilitator Superfamily ACIAD1816 PF13577 SnoaL-like domain ACIAD1817 PF12833 Helix-turn-helix domain ACIAD1818 PF00501 AMP-binding enzyme ACIAD1818 PF13193 AMP-binding enzyme C-terminal domain ACIAD1820 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1821 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1821 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1821 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1825 PF08450 SMP-30/Gluconolactonase/LRE-like region ACIAD1826 PF00583 Acetyltransferase (GNAT) family ACIAD1826 PF13380 CoA binding domain ACIAD1826 PF13607 Succinyl-CoA ligase like flavodoxin domain ACIAD1827 PF01613 Flavin reductase like domain ACIAD1829 PF00378 Enoyl-CoA hydratase/isomerase ACIAD1830 PF00296 Luciferase-like monooxygenase ACIAD1832 PF09905 DNA-binding protein VF530 ACIAD1834 PF12833 Helix-turn-helix domain ACIAD1834 PF06719 AraC-type transcriptional regulator N-terminus ACIAD1835 PF12146 Serine aminopeptidase, S33 ACIAD1836 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD1838 PF12833 Helix-turn-helix domain ACIAD1838 PF06719 AraC-type transcriptional regulator N-terminus ACIAD1840 PF06719 AraC-type transcriptional regulator N-terminus ACIAD1840 PF12833 Helix-turn-helix domain ACIAD1866 PF00375 Sodium:dicarboxylate symporter family ACIAD1868 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ACIAD1869 PF00924 Mechanosensitive ion channel ACIAD1873 PF00664 ABC transporter transmembrane region ACIAD1873 PF00005 ABC transporter ACIAD1875 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ACIAD1875 PF12833 Helix-turn-helix domain ACIAD1876 PF01597 Glycine cleavage H-protein ACIAD1878 PF00793 DAHP synthetase I family ACIAD1879 PF00107 Zinc-binding dehydrogenase ACIAD1879 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD1880 PF02583 Metal-sensitive transcriptional repressor ACIAD1881 PF13091 PLD-like domain ACIAD1883 PF00106 short chain dehydrogenase ACIAD1886 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD1886 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD1886 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD1887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1887 PF03466 LysR substrate binding domain ACIAD1890 PF10415 Fumarase C C-terminus ACIAD1890 PF00206 Lyase ACIAD1891 PF16363 GDP-mannose 4,6 dehydratase ACIAD1892 PF02635 DsrE/DsrF-like family ACIAD1896 PF00892 EamA-like transporter family ACIAD1897 PF00155 Aminotransferase class I and II ACIAD1899 PF03459 TOBE domain ACIAD1899 PF00005 ABC transporter ACIAD1900 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD1902 PF03453 MoeA N-terminal region (domain I and II) ACIAD1902 PF03454 MoeA C-terminal region (domain IV) ACIAD1902 PF00994 Probable molybdopterin binding domain ACIAD1903 PF00994 Probable molybdopterin binding domain ACIAD1903 PF01967 MoaC family ACIAD1904 PF02391 MoaE protein ACIAD1906 PF04055 Radical SAM superfamily ACIAD1906 PF06463 Molybdenum Cofactor Synthesis C ACIAD1907 PF12804 MobA-like NTP transferase domain ACIAD1908 PF04324 BFD-like [2Fe-2S] binding domain ACIAD1908 PF00384 Molybdopterin oxidoreductase ACIAD1908 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIAD1908 PF01568 Molydopterin dinucleotide binding domain ACIAD1909 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIAD1909 PF18267 Rubredoxin NAD+ reductase C-terminal domain ACIAD1909 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIAD1909 PF04324 BFD-like [2Fe-2S] binding domain ACIAD1909 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIAD1910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIAD1910 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD1910 PF18267 Rubredoxin NAD+ reductase C-terminal domain ACIAD1910 PF04324 BFD-like [2Fe-2S] binding domain ACIAD1911 PF07690 Major Facilitator Superfamily ACIAD1914 PF00005 ABC transporter ACIAD1915 PF00384 Molybdopterin oxidoreductase ACIAD1916 PF02634 FdhD/NarQ family ACIAD1920 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIAD1920 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ACIAD1921 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACIAD1922 PF00149 Calcineurin-like phosphoesterase ACIAD1923 PF00881 Nitroreductase family ACIAD1925 PF01116 Fructose-bisphosphate aldolase class-II ACIAD1927 PF00162 Phosphoglycerate kinase ACIAD1930 PF02545 Maf-like protein ACIAD1931 PF03600 Citrate transporter ACIAD1933 PF08007 Cupin superfamily protein ACIAD1934 PF01645 Conserved region in glutamate synthase ACIAD1935 PF00158 Sigma-54 interaction domain ACIAD1937 PF00005 ABC transporter ACIAD1940 PF02653 Branched-chain amino acid transport system / permease component ACIAD1941 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACIAD1941 PF00005 ABC transporter ACIAD1945 PF01565 FAD binding domain ACIAD1945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACIAD1946 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIAD1948 PF00313 'Cold-shock' DNA-binding domain ACIAD1950 PF00465 Iron-containing alcohol dehydrogenase ACIAD1951 PF03061 Thioesterase superfamily ACIAD1952 PF02342 TerD domain ACIAD1955 PF02342 TerD domain ACIAD1957 PF02342 TerD domain ACIAD1958 PF02342 TerD domain ACIAD1960 PF15608 PELOTA RNA binding domain ACIAD1960 PF11202 Phosphoribosyl transferase (PRTase) ACIAD1968 PF02342 TerD domain ACIAD1969 PF00092 von Willebrand factor type A domain ACIAD1970 PF12170 DNA polymerase III tau subunit V interacting with alpha ACIAD1970 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACIAD1970 PF12169 DNA polymerase III subunits gamma and tau domain III ACIAD1971 PF07690 Major Facilitator Superfamily ACIAD1973 PF13305 Tetracyclin repressor-like, C-terminal domain ACIAD1973 PF00440 Bacterial regulatory proteins, tetR family ACIAD1974 PF00144 Beta-lactamase ACIAD1977 PF02803 Thiolase, C-terminal domain ACIAD1977 PF00108 Thiolase, N-terminal domain ACIAD1979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD1981 PF01810 LysE type translocator ACIAD1982 PF03594 Benzoate membrane transport protein ACIAD1983 PF02308 MgtC family ACIAD1984 PF00690 Cation transporter/ATPase, N-terminus ACIAD1984 PF00689 Cation transporting ATPase, C-terminus ACIAD1986 PF06271 RDD family ACIAD1987 PF00557 Metallopeptidase family M24 ACIAD1988 PF05525 Branched-chain amino acid transport protein ACIAD1990 PF00391 PEP-utilising enzyme, mobile domain ACIAD1990 PF05524 PEP-utilising enzyme, N-terminal ACIAD1990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACIAD1990 PF02896 PEP-utilising enzyme, TIM barrel domain ACIAD1990 PF00381 PTS HPr component phosphorylation site ACIAD1992 PF00294 pfkB family carbohydrate kinase ACIAD1993 PF02378 Phosphotransferase system, EIIC ACIAD1993 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACIAD1996 PF02542 YgbB family ACIAD1998 PF01266 FAD dependent oxidoreductase ACIAD1999 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACIAD2000 PF04977 Septum formation initiator ACIAD2001 PF00113 Enolase, C-terminal TIM barrel domain ACIAD2001 PF03952 Enolase, N-terminal domain ACIAD2002 PF00793 DAHP synthetase I family ACIAD2003 PF06418 CTP synthase N-terminus ACIAD2003 PF00117 Glutamine amidotransferase class-I ACIAD2005 PF00582 Universal stress protein family ACIAD2008 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ACIAD2008 PF01433 Peptidase family M1 domain ACIAD2008 PF11940 Domain of unknown function (DUF3458) Ig-like fold ACIAD2011 PF02110 Hydroxyethylthiazole kinase family ACIAD2012 PF06445 GyrI-like small molecule binding domain ACIAD2014 PF14493 Helix-turn-helix domain ACIAD2014 PF05970 PIF1-like helicase ACIAD2015 PF00465 Iron-containing alcohol dehydrogenase ACIAD2018 PF00171 Aldehyde dehydrogenase family ACIAD2019 PF00117 Glutamine amidotransferase class-I ACIAD2019 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACIAD2028 PF01264 Chorismate synthase ACIAD2029 PF05175 Methyltransferase small domain ACIAD2032 PF00155 Aminotransferase class I and II ACIAD2032 PF00392 Bacterial regulatory proteins, gntR family ACIAD2034 PF04264 YceI-like domain ACIAD2035 PF02780 Transketolase, C-terminal domain ACIAD2035 PF02779 Transketolase, pyrimidine binding domain ACIAD2035 PF00456 Transketolase, thiamine diphosphate binding domain ACIAD2037 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACIAD2037 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACIAD2037 PF02772 S-adenosylmethionine synthetase, central domain ACIAD2041 PF02075 Crossover junction endodeoxyribonuclease RuvC ACIAD2042 PF01256 Carbohydrate kinase ACIAD2042 PF03853 YjeF-related protein N-terminus ACIAD2043 PF08331 Domain of unknown function (DUF1730) ACIAD2045 PF04055 Radical SAM superfamily ACIAD2045 PF06968 Biotin and Thiamin Synthesis associated domain ACIAD2048 PF00210 Ferritin-like domain ACIAD2049 PF00593 TonB dependent receptor ACIAD2049 PF07715 TonB-dependent Receptor Plug Domain ACIAD2052 PF01709 Transcriptional regulator ACIAD2056 PF00005 ABC transporter ACIAD2058 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2059 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2064 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD2064 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD2066 PF00296 Luciferase-like monooxygenase ACIAD2068 PF03180 NLPA lipoprotein ACIAD2069 PF00005 ABC transporter ACIAD2069 PF09383 NIL domain ACIAD2070 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2071 PF06071 Protein of unknown function (DUF933) ACIAD2071 PF01926 50S ribosome-binding GTPase ACIAD2072 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIAD2072 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIAD2078 PF02222 ATP-grasp domain ACIAD2079 PF08335 GlnD PII-uridylyltransferase ACIAD2079 PF01909 Nucleotidyltransferase domain ACIAD2079 PF01966 HD domain ACIAD2080 PF00155 Aminotransferase class I and II ACIAD2082 PF07715 TonB-dependent Receptor Plug Domain ACIAD2082 PF00593 TonB dependent receptor ACIAD2084 PF12833 Helix-turn-helix domain ACIAD2084 PF12852 Cupin ACIAD2085 PF00255 Glutathione peroxidase ACIAD2086 PF01641 SelR domain ACIAD2087 PF00155 Aminotransferase class I and II ACIAD2088 PF00710 Asparaginase, N-terminal ACIAD2088 PF17763 Glutaminase/Asparaginase C-terminal domain ACIAD2089 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIAD2089 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIAD2089 PF14579 Helix-hairpin-helix motif ACIAD2089 PF02811 PHP domain ACIAD2089 PF01336 OB-fold nucleic acid binding domain ACIAD2090 PF00588 SpoU rRNA Methylase family ACIAD2091 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD2096 PF00990 Diguanylate cyclase, GGDEF domain ACIAD2096 PF05230 MASE2 domain ACIAD2098 PF02677 Epoxyqueuosine reductase QueH ACIAD2099 PF12697 Alpha/beta hydrolase family ACIAD2100 PF07690 Major Facilitator Superfamily ACIAD2101 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACIAD2101 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACIAD2102 PF11898 Domain of unknown function (DUF3418) ACIAD2102 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ACIAD2102 PF00270 DEAD/DEAH box helicase ACIAD2102 PF00271 Helicase conserved C-terminal domain ACIAD2102 PF04408 Helicase associated domain (HA2) ACIAD2103 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIAD2103 PF00578 AhpC/TSA family ACIAD2106 PF00501 AMP-binding enzyme ACIAD2116 PF00593 TonB dependent receptor ACIAD2116 PF07715 TonB-dependent Receptor Plug Domain ACIAD2120 PF06276 Ferric iron reductase FhuF-like transporter ACIAD2120 PF04183 IucA / IucC family ACIAD2121 PF04183 IucA / IucC family ACIAD2121 PF06276 Ferric iron reductase FhuF-like transporter ACIAD2122 PF07690 Major Facilitator Superfamily ACIAD2123 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ACIAD2124 PF04183 IucA / IucC family ACIAD2124 PF06276 Ferric iron reductase FhuF-like transporter ACIAD2170 PF08346 AntA/AntB antirepressor ACIAD2170 PF10548 P22AR C-terminal domain ACIAD2174 PF06381 Protein of unknown function (DUF1073) ACIAD2181 PF01381 Helix-turn-helix ACIAD2185 PF03796 DnaB-like helicase C terminal domain ACIAD2185 PF00772 DnaB-like helicase N terminal domain ACIAD2200 PF00589 Phage integrase family ACIAD2201 PF01841 Transglutaminase-like superfamily ACIAD2201 PF11992 Domain of unknown function (DUF3488) ACIAD2201 PF13559 Domain of unknown function (DUF4129) ACIAD2203 PF07726 ATPase family associated with various cellular activities (AAA) ACIAD2203 PF17863 AAA lid domain ACIAD2204 PF04328 Selenoprotein, putative ACIAD2205 PF13722 5TM C-terminal transporter carbon starvation CstA ACIAD2205 PF02554 Carbon starvation protein CstA ACIAD2206 PF08207 Elongation factor P (EF-P) KOW-like domain ACIAD2206 PF01132 Elongation factor P (EF-P) OB domain ACIAD2206 PF09285 Elongation factor P, C-terminal ACIAD2207 PF04055 Radical SAM superfamily ACIAD2210 PF01197 Ribosomal protein L31 ACIAD2212 PF13593 SBF-like CPA transporter family (DUF4137) ACIAD2213 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACIAD2214 PF07690 Major Facilitator Superfamily ACIAD2216 PF05362 Lon protease (S16) C-terminal proteolytic domain ACIAD2216 PF13654 AAA domain ACIAD2218 PF03883 Peroxide stress protein YaaA ACIAD2220 PF07687 Peptidase dimerisation domain ACIAD2220 PF01546 Peptidase family M20/M25/M40 ACIAD2222 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIAD2223 PF00800 Prephenate dehydratase ACIAD2223 PF01817 Chorismate mutase type II ACIAD2223 PF01842 ACT domain ACIAD2225 PF01965 DJ-1/PfpI family ACIAD2226 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD2226 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD2226 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD2227 PF00375 Sodium:dicarboxylate symporter family ACIAD2229 PF02885 Glycosyl transferase family, helical bundle domain ACIAD2229 PF00591 Glycosyl transferase family, a/b domain ACIAD2230 PF07023 Protein of unknown function (DUF1315) ACIAD2231 PF01513 ATP-NAD kinase ACIAD2234 PF00905 Penicillin binding protein transpeptidase domain ACIAD2234 PF00912 Transglycosylase ACIAD2234 PF14814 Bifunctional transglycosylase second domain ACIAD2236 PF00293 NUDIX domain ACIAD2238 PF00512 His Kinase A (phospho-acceptor) domain ACIAD2238 PF08521 Two-component sensor kinase N-terminal ACIAD2238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD2239 PF00486 Transcriptional regulatory protein, C terminal ACIAD2239 PF00072 Response regulator receiver domain ACIAD2241 PF00437 Type II/IV secretion system protein ACIAD2242 PF00990 Diguanylate cyclase, GGDEF domain ACIAD2242 PF13185 GAF domain ACIAD2243 PF01980 tRNA-methyltransferase O ACIAD2243 PF18389 TrmO C-terminal domain ACIAD2244 PF00175 Oxidoreductase NAD-binding domain ACIAD2244 PF00970 Oxidoreductase FAD-binding domain ACIAD2247 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ACIAD2248 PF01177 Asp/Glu/Hydantoin racemase ACIAD2249 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACIAD2250 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD2250 PF13192 Thioredoxin domain ACIAD2252 PF05816 Toxic anion resistance protein (TelA) ACIAD2255 PF00464 Serine hydroxymethyltransferase ACIAD2259 PF00005 ABC transporter ACIAD2260 PF01061 ABC-2 type transporter ACIAD2261 PF14489 QueF-like protein ACIAD2261 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ACIAD2263 PF01098 Cell cycle protein ACIAD2264 PF13406 Transglycosylase SLT domain ACIAD2265 PF03330 Lytic transglycolase ACIAD2265 PF05036 Sporulation related domain ACIAD2268 PF00889 Elongation factor TS ACIAD2269 PF00318 Ribosomal protein S2 ACIAD2271 PF00557 Metallopeptidase family M24 ACIAD2274 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD2274 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIAD2275 PF04055 Radical SAM superfamily ACIAD2277 PF09317 Domain of unknown function (DUF1974) ACIAD2277 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD2277 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD2279 PF05230 MASE2 domain ACIAD2279 PF00990 Diguanylate cyclase, GGDEF domain ACIAD2280 PF00083 Sugar (and other) transporter ACIAD2280 PF08946 Osmosensory transporter coiled coil ACIAD2282 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACIAD2282 PF05221 S-adenosyl-L-homocysteine hydrolase ACIAD2283 PF02219 Methylenetetrahydrofolate reductase ACIAD2284 PF04452 RNA methyltransferase ACIAD2287 PF00390 Malic enzyme, N-terminal domain ACIAD2287 PF01515 Phosphate acetyl/butaryl transferase ACIAD2287 PF03949 Malic enzyme, NAD binding domain ACIAD2288 PF01743 Poly A polymerase head domain ACIAD2288 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIAD2290 PF01654 Cytochrome bd terminal oxidase subunit I ACIAD2291 PF02322 Cytochrome bd terminal oxidase subunit II ACIAD2296 PF00448 SRP54-type protein, GTPase domain ACIAD2296 PF02881 SRP54-type protein, helical bundle domain ACIAD2298 PF05193 Peptidase M16 inactive domain ACIAD2298 PF00675 Insulinase (Peptidase family M16) ACIAD2305 PF03061 Thioesterase superfamily ACIAD2305 PF00571 CBS domain ACIAD2305 PF07085 DRTGG domain ACIAD2305 PF00392 Bacterial regulatory proteins, gntR family ACIAD2307 PF01434 Peptidase family M41 ACIAD2307 PF17862 AAA+ lid domain ACIAD2307 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD2309 PF05166 YcgL domain ACIAD2310 PF01612 3'-5' exonuclease ACIAD2310 PF00570 HRDC domain ACIAD2312 PF02132 RecR protein ACIAD2312 PF13662 Toprim domain ACIAD2313 PF02575 YbaB/EbfC DNA-binding family ACIAD2314 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIAD2316 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIAD2316 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACIAD2318 PF01230 HIT domain ACIAD2324 PF02684 Lipid-A-disaccharide synthetase ACIAD2325 PF07715 TonB-dependent Receptor Plug Domain ACIAD2325 PF00593 TonB dependent receptor ACIAD2329 PF01925 Sulfite exporter TauE/SafE ACIAD2330 PF00793 DAHP synthetase I family ACIAD2331 PF03741 Integral membrane protein TerC family ACIAD2331 PF03471 Transporter associated domain ACIAD2335 PF01274 Malate synthase ACIAD2336 PF03969 AFG1-like ATPase ACIAD2339 PF00743 Flavin-binding monooxygenase-like ACIAD2341 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACIAD2343 PF03591 AzlC protein ACIAD2346 PF00216 Bacterial DNA-binding protein ACIAD2347 PF00575 S1 RNA binding domain ACIAD2348 PF02224 Cytidylate kinase ACIAD2350 PF14437 MafB19-like deaminase ACIAD2352 PF03167 Uracil DNA glycosylase superfamily ACIAD2354 PF03934 Type II secretion system (T2SS), protein K ACIAD2355 PF11612 Type II secretion system (T2SS), protein J ACIAD2355 PF07963 Prokaryotic N-terminal methylation motif ACIAD2356 PF07963 Prokaryotic N-terminal methylation motif ACIAD2356 PF02501 Type II secretion system (T2SS), protein I ACIAD2357 PF08334 Type II secretion system (T2SS), protein G ACIAD2357 PF07963 Prokaryotic N-terminal methylation motif ACIAD2359 PF01026 TatD related DNase ACIAD2361 PF09115 DNA polymerase III, delta subunit, C terminal ACIAD2362 PF02348 Cytidylyltransferase ACIAD2363 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACIAD2365 PF00005 ABC transporter ACIAD2365 PF00664 ABC transporter transmembrane region ACIAD2366 PF17762 HTH domain found in ParB protein ACIAD2366 PF02195 ParB-like nuclease domain ACIAD2367 PF13614 AAA domain ACIAD2368 PF02527 rRNA small subunit methyltransferase G ACIAD2369 PF00483 Nucleotidyl transferase ACIAD2370 PF01636 Phosphotransferase enzyme family ACIAD2371 PF03968 OstA-like protein ACIAD2371 PF04453 LPS transport system D ACIAD2372 PF09312 SurA N-terminal domain ACIAD2372 PF00639 PPIC-type PPIASE domain ACIAD2373 PF17209 Hfq protein ACIAD2375 PF01119 DNA mismatch repair protein, C-terminal domain ACIAD2375 PF08676 MutL C terminal dimerisation domain ACIAD2376 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACIAD2377 PF01479 S4 domain ACIAD2377 PF00849 RNA pseudouridylate synthase ACIAD2380 PF01479 S4 domain ACIAD2380 PF00849 RNA pseudouridylate synthase ACIAD2383 PF04284 Protein of unknown function (DUF441) ACIAD2384 PF03466 LysR substrate binding domain ACIAD2384 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2385 PF07690 Major Facilitator Superfamily ACIAD2386 PF01156 Inosine-uridine preferring nucleoside hydrolase ACIAD2389 PF01773 Na+ dependent nucleoside transporter N-terminus ACIAD2389 PF07662 Na+ dependent nucleoside transporter C-terminus ACIAD2390 PF00520 Ion transport protein ACIAD2390 PF00027 Cyclic nucleotide-binding domain ACIAD2392 PF00294 pfkB family carbohydrate kinase ACIAD2395 PF00330 Aconitase family (aconitate hydratase) ACIAD2395 PF11791 Aconitate B N-terminal domain ACIAD2395 PF06434 Aconitate hydratase 2 N-terminus ACIAD2398 PF02583 Metal-sensitive transcriptional repressor ACIAD2400 PF00403 Heavy-metal-associated domain ACIAD2401 PF00403 Heavy-metal-associated domain ACIAD2403 PF07244 Surface antigen variable number repeat ACIAD2403 PF01103 Surface antigen ACIAD2403 PF17243 POTRA domain TamA domain 1 ACIAD2404 PF07690 Major Facilitator Superfamily ACIAD2405 PF03232 Ubiquinone biosynthesis protein COQ7 ACIAD2408 PF02152 Dihydroneopterin aldolase ACIAD2409 PF03109 ABC1 family ACIAD2411 PF00899 ThiF family ACIAD2413 PF00012 Hsp70 protein ACIAD2415 PF03706 Lysylphosphatidylglycerol synthase TM region ACIAD2416 PF00106 short chain dehydrogenase ACIAD2417 PF13847 Methyltransferase domain ACIAD2417 PF17827 PrmC N-terminal domain ACIAD2418 PF00472 RF-1 domain ACIAD2418 PF03462 PCRF domain ACIAD2420 PF00296 Luciferase-like monooxygenase ACIAD2421 PF00563 EAL domain ACIAD2421 PF00990 Diguanylate cyclase, GGDEF domain ACIAD2421 PF03707 Bacterial signalling protein N terminal repeat ACIAD2422 PF03618 Kinase/pyrophosphorylase ACIAD2423 PF02896 PEP-utilising enzyme, TIM barrel domain ACIAD2423 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ACIAD2423 PF00391 PEP-utilising enzyme, mobile domain ACIAD2425 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIAD2425 PF06481 COX Aromatic Rich Motif ACIAD2426 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIAD2427 PF00510 Cytochrome c oxidase subunit III ACIAD2428 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ACIAD2429 PF01040 UbiA prenyltransferase family ACIAD2430 PF01250 Ribosomal protein S6 ACIAD2431 PF01084 Ribosomal protein S18 ACIAD2432 PF03948 Ribosomal protein L9, C-terminal domain ACIAD2432 PF01281 Ribosomal protein L9, N-terminal domain ACIAD2433 PF00772 DnaB-like helicase N terminal domain ACIAD2433 PF03796 DnaB-like helicase C terminal domain ACIAD2434 PF01168 Alanine racemase, N-terminal domain ACIAD2434 PF00842 Alanine racemase, C-terminal domain ACIAD2436 PF01841 Transglutaminase-like superfamily ACIAD2436 PF08379 Bacterial transglutaminase-like N-terminal region ACIAD2438 PF14403 Circularly permuted ATP-grasp type 2 ACIAD2440 PF01134 Glucose inhibited division protein A ACIAD2440 PF13932 GidA associated domain ACIAD2446 PF02954 Bacterial regulatory protein, Fis family ACIAD2447 PF02142 MGS-like domain ACIAD2447 PF01808 AICARFT/IMPCHase bienzyme ACIAD2448 PF02844 Phosphoribosylglycinamide synthetase, N domain ACIAD2448 PF02843 Phosphoribosylglycinamide synthetase, C domain ACIAD2448 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACIAD2449 PF03180 NLPA lipoprotein ACIAD2450 PF09383 NIL domain ACIAD2450 PF00005 ABC transporter ACIAD2451 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2452 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACIAD2452 PF00753 Metallo-beta-lactamase superfamily ACIAD2455 PF01040 UbiA prenyltransferase family ACIAD2456 PF04345 Chorismate lyase ACIAD2461 PF00117 Glutamine amidotransferase class-I ACIAD2462 PF02885 Glycosyl transferase family, helical bundle domain ACIAD2462 PF00591 Glycosyl transferase family, a/b domain ACIAD2463 PF00218 Indole-3-glycerol phosphate synthase ACIAD2466 PF13478 XdhC Rossmann domain ACIAD2466 PF02625 XdhC and CoxI family ACIAD2467 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACIAD2467 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ACIAD2468 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ACIAD2468 PF01799 [2Fe-2S] binding domain ACIAD2468 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD2468 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACIAD2471 PF09335 SNARE associated Golgi protein ACIAD2472 PF07690 Major Facilitator Superfamily ACIAD2473 PF05675 Protein of unknown function (DUF817) ACIAD2474 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACIAD2476 PF17954 Quercetinase C-terminal cupin domain ACIAD2476 PF02678 Pirin ACIAD2477 PF18019 HD domain ACIAD2482 PF09615 CRISPR-associated protein (Cas_Csy3) ACIAD2484 PF01867 CRISPR associated protein Cas1 ACIAD2500 PF00072 Response regulator receiver domain ACIAD2501 PF00512 His Kinase A (phospho-acceptor) domain ACIAD2501 PF00072 Response regulator receiver domain ACIAD2501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD2501 PF09308 LuxQ, periplasmic ACIAD2503 PF08042 PqqA family ACIAD2504 PF12706 Beta-lactamase superfamily domain ACIAD2505 PF03070 TENA/THI-4/PQQC family ACIAD2506 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ACIAD2507 PF13186 Iron-sulfur cluster-binding domain ACIAD2507 PF04055 Radical SAM superfamily ACIAD2508 PF01244 Membrane dipeptidase (Peptidase family M19) ACIAD2511 PF03466 LysR substrate binding domain ACIAD2511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2513 PF01144 Coenzyme A transferase ACIAD2514 PF01144 Coenzyme A transferase ACIAD2515 PF02667 Short chain fatty acid transporter ACIAD2516 PF00108 Thiolase, N-terminal domain ACIAD2516 PF02803 Thiolase, C-terminal domain ACIAD2517 PF00289 Biotin carboxylase, N-terminal domain ACIAD2517 PF02785 Biotin carboxylase C-terminal domain ACIAD2517 PF00364 Biotin-requiring enzyme ACIAD2517 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIAD2519 PF07286 Protein of unknown function (DUF1445) ACIAD2520 PF03746 LamB/YcsF family ACIAD2521 PF01566 Natural resistance-associated macrophage protein ACIAD2522 PF03466 LysR substrate binding domain ACIAD2522 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2525 PF01645 Conserved region in glutamate synthase ACIAD2526 PF01493 GXGXG motif ACIAD2528 PF00120 Glutamine synthetase, catalytic domain ACIAD2531 PF07690 Major Facilitator Superfamily ACIAD2533 PF03466 LysR substrate binding domain ACIAD2533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2534 PF00909 Ammonium Transporter Family ACIAD2535 PF00083 Sugar (and other) transporter ACIAD2536 PF00296 Luciferase-like monooxygenase ACIAD2537 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD2537 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD2537 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD2538 PF02627 Carboxymuconolactone decarboxylase family ACIAD2539 PF00171 Aldehyde dehydrogenase family ACIAD2541 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ACIAD2542 PF00171 Aldehyde dehydrogenase family ACIAD2543 PF00296 Luciferase-like monooxygenase ACIAD2544 PF01613 Flavin reductase like domain ACIAD2545 PF12697 Alpha/beta hydrolase family ACIAD2547 PF07729 FCD domain ACIAD2547 PF00392 Bacterial regulatory proteins, gntR family ACIAD2550 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACIAD2550 PF01571 Aminomethyltransferase folate-binding domain ACIAD2550 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD2550 PF17806 Sarcosine oxidase A3 domain ACIAD2551 PF04267 Sarcosine oxidase, delta subunit family ACIAD2552 PF01266 FAD dependent oxidoreductase ACIAD2553 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACIAD2553 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACIAD2554 PF00551 Formyl transferase ACIAD2556 PF03060 Nitronate monooxygenase ACIAD2557 PF01207 Dihydrouridine synthase (Dus) ACIAD2558 PF07759 Protein of unknown function (DUF1615) ACIAD2560 PF01472 PUA domain ACIAD2560 PF00696 Amino acid kinase family ACIAD2561 PF01926 50S ribosome-binding GTPase ACIAD2561 PF01018 GTP1/OBG ACIAD2565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIAD2565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIAD2566 PF00892 EamA-like transporter family ACIAD2569 PF00271 Helicase conserved C-terminal domain ACIAD2569 PF17757 UvrB interaction domain ACIAD2569 PF12344 Ultra-violet resistance protein B ACIAD2569 PF04851 Type III restriction enzyme, res subunit ACIAD2569 PF02151 UvrB/uvrC motif ACIAD2572 PF03707 Bacterial signalling protein N terminal repeat ACIAD2572 PF00990 Diguanylate cyclase, GGDEF domain ACIAD2572 PF00563 EAL domain ACIAD2576 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ACIAD2577 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACIAD2578 PF11967 Recombination protein O N terminal ACIAD2578 PF02565 Recombination protein O C terminal ACIAD2580 PF01926 50S ribosome-binding GTPase ACIAD2580 PF07650 KH domain ACIAD2581 PF14622 Ribonuclease-III-like ACIAD2581 PF00035 Double-stranded RNA binding motif ACIAD2583 PF10502 Signal peptidase, peptidase S26 ACIAD2584 PF06421 GTP-binding protein LepA C-terminus ACIAD2584 PF03144 Elongation factor Tu domain 2 ACIAD2584 PF00009 Elongation factor Tu GTP binding domain ACIAD2584 PF00679 Elongation factor G C-terminus ACIAD2586 PF13180 PDZ domain ACIAD2587 PF00890 FAD binding domain ACIAD2587 PF02910 Fumarate reductase flavoprotein C-term ACIAD2588 PF02223 Thymidylate kinase ACIAD2589 PF02618 YceG-like family ACIAD2590 PF01063 Amino-transferase class IV ACIAD2594 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2595 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD2596 PF00005 ABC transporter ACIAD2596 PF12857 TOBE-like domain ACIAD2597 PF03466 LysR substrate binding domain ACIAD2597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2599 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD2599 PF14602 Hexapeptide repeat of succinyl-transferase ACIAD2599 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACIAD2600 PF04055 Radical SAM superfamily ACIAD2601 PF06508 Queuosine biosynthesis protein QueC ACIAD2603 PF00578 AhpC/TSA family ACIAD2604 PF04264 YceI-like domain ACIAD2606 PF01467 Cytidylyltransferase-like ACIAD2606 PF00293 NUDIX domain ACIAD2607 PF00378 Enoyl-CoA hydratase/isomerase ACIAD2608 PF00881 Nitroreductase family ACIAD2609 PF01784 NIF3 (NGG1p interacting factor 3) ACIAD2612 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACIAD2612 PF02769 AIR synthase related protein, C-terminal domain ACIAD2612 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ACIAD2613 PF01966 HD domain ACIAD2614 PF07499 RuvA, C-terminal domain ACIAD2614 PF01330 RuvA N terminal domain ACIAD2615 PF17864 RuvB AAA lid domain ACIAD2615 PF05491 RuvB C-terminal winged helix domain ACIAD2615 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACIAD2618 PF03061 Thioesterase superfamily ACIAD2619 PF01618 MotA/TolQ/ExbB proton channel family ACIAD2620 PF02472 Biopolymer transport protein ExbD/TolR ACIAD2622 PF04052 TolB amino-terminal domain ACIAD2622 PF07676 WD40-like Beta Propeller Repeat ACIAD2623 PF00691 OmpA family ACIAD2625 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACIAD2626 PF00588 SpoU rRNA Methylase family ACIAD2626 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACIAD2632 PF11638 DnaA N-terminal domain ACIAD2632 PF08299 Bacterial dnaA protein helix-turn-helix ACIAD2632 PF00308 Bacterial dnaA protein ACIAD2633 PF01594 AI-2E family transporter ACIAD2634 PF00586 AIR synthase related protein, N-terminal domain ACIAD2634 PF02769 AIR synthase related protein, C-terminal domain ACIAD2635 PF00551 Formyl transferase ACIAD2636 PF12697 Alpha/beta hydrolase family ACIAD2637 PF06965 Na+/H+ antiporter 1 ACIAD2637 PF01343 Peptidase family S49 ACIAD2639 PF03772 Competence protein ACIAD2639 PF13567 Domain of unknown function (DUF4131) ACIAD2639 PF00753 Metallo-beta-lactamase superfamily ACIAD2640 PF00005 ABC transporter ACIAD2641 PF12704 MacB-like periplasmic core domain ACIAD2641 PF02687 FtsX-like permease family ACIAD2644 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ACIAD2647 PF00266 Aminotransferase class-V ACIAD2649 PF13533 Biotin-lipoyl like ACIAD2652 PF03989 DNA gyrase C-terminal domain, beta-propeller ACIAD2652 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIAD2654 PF00766 Electron transfer flavoprotein FAD-binding domain ACIAD2654 PF01012 Electron transfer flavoprotein domain ACIAD2655 PF01012 Electron transfer flavoprotein domain ACIAD2657 PF02899 Phage integrase, N-terminal SAM-like domain ACIAD2657 PF00589 Phage integrase family ACIAD2659 PF01678 Diaminopimelate epimerase ACIAD2660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIAD2660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACIAD2662 PF00324 Amino acid permease ACIAD2664 PF18073 Rubredoxin metal binding domain ACIAD2666 PF00152 tRNA synthetases class II (D, K and N) ACIAD2667 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD2667 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD2667 PF11890 Domain of unknown function (DUF3410) ACIAD2669 PF00355 Rieske [2Fe-2S] domain ACIAD2669 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ACIAD2670 PF00866 Ring hydroxylating beta subunit ACIAD2671 PF00970 Oxidoreductase FAD-binding domain ACIAD2671 PF00175 Oxidoreductase NAD-binding domain ACIAD2671 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIAD2672 PF12833 Helix-turn-helix domain ACIAD2672 PF14525 AraC-binding-like domain ACIAD2674 PF01613 Flavin reductase like domain ACIAD2677 PF01738 Dienelactone hydrolase family ACIAD2678 PF14525 AraC-binding-like domain ACIAD2678 PF12833 Helix-turn-helix domain ACIAD2680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACIAD2680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACIAD2694 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD2694 PF07724 AAA domain (Cdc48 subfamily) ACIAD2694 PF17871 AAA lid domain ACIAD2694 PF10431 C-terminal, D2-small domain, of ClpB protein ACIAD2700 PF04303 PrpF protein ACIAD2721 PF01494 FAD binding domain ACIAD2722 PF13533 Biotin-lipoyl like ACIAD2723 PF00857 Isochorismatase family ACIAD2725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD2727 PF03466 LysR substrate binding domain ACIAD2727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2729 PF00717 Peptidase S24-like ACIAD2735 PF02470 MlaD protein ACIAD2736 PF04403 Paraquat-inducible protein A ACIAD2738 PF00107 Zinc-binding dehydrogenase ACIAD2738 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD2740 PF00440 Bacterial regulatory proteins, tetR family ACIAD2740 PF16925 Tetracyclin repressor-like, C-terminal domain ACIAD2742 PF03466 LysR substrate binding domain ACIAD2742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD2743 PF01810 LysE type translocator ACIAD2748 PF00561 alpha/beta hydrolase fold ACIAD2755 PF00330 Aconitase family (aconitate hydratase) ACIAD2755 PF00694 Aconitase C-terminal domain ACIAD2756 PF00285 Citrate synthase, C-terminal domain ACIAD2759 PF00392 Bacterial regulatory proteins, gntR family ACIAD2759 PF07729 FCD domain ACIAD2761 PF01554 MatE ACIAD2764 PF07715 TonB-dependent Receptor Plug Domain ACIAD2764 PF00593 TonB dependent receptor ACIAD2765 PF00975 Thioesterase domain ACIAD2766 PF01648 4'-phosphopantetheinyl transferase superfamily ACIAD2766 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ACIAD2768 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIAD2768 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACIAD2769 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ACIAD2770 PF00501 AMP-binding enzyme ACIAD2770 PF13193 AMP-binding enzyme C-terminal domain ACIAD2771 PF00501 AMP-binding enzyme ACIAD2771 PF13193 AMP-binding enzyme C-terminal domain ACIAD2771 PF00668 Condensation domain ACIAD2771 PF00975 Thioesterase domain ACIAD2771 PF00550 Phosphopantetheine attachment site ACIAD2772 PF00550 Phosphopantetheine attachment site ACIAD2772 PF00668 Condensation domain ACIAD2772 PF13193 AMP-binding enzyme C-terminal domain ACIAD2772 PF00501 AMP-binding enzyme ACIAD2773 PF00501 AMP-binding enzyme ACIAD2773 PF00668 Condensation domain ACIAD2773 PF00550 Phosphopantetheine attachment site ACIAD2774 PF00106 short chain dehydrogenase ACIAD2775 PF00550 Phosphopantetheine attachment site ACIAD2775 PF00857 Isochorismatase family ACIAD2776 PF00425 chorismate binding enzyme ACIAD2784 PF13332 Hemagglutinin repeat ACIAD2784 PF13018 Extended Signal Peptide of Type V secretion system ACIAD2784 PF05860 haemagglutination activity domain ACIAD2784 PF04829 Pre-toxin domain with VENN motif ACIAD2785 PF08479 POTRA domain, ShlB-type ACIAD2785 PF17287 POTRA domain ACIAD2785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACIAD2790 PF01266 FAD dependent oxidoreductase ACIAD2794 PF00743 Flavin-binding monooxygenase-like ACIAD2795 PF12146 Serine aminopeptidase, S33 ACIAD2809 PF05656 Protein of unknown function (DUF805) ACIAD2814 PF03449 Transcription elongation factor, N-terminal ACIAD2814 PF01272 Transcription elongation factor, GreA/GreB, C-term ACIAD2817 PF09339 IclR helix-turn-helix domain ACIAD2817 PF01614 Bacterial transcriptional regulator ACIAD2818 PF03600 Citrate transporter ACIAD2820 PF00682 HMGL-like ACIAD2821 PF02515 CoA-transferase family III ACIAD2822 PF07690 Major Facilitator Superfamily ACIAD2827 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIAD2827 PF01464 Transglycosylase SLT domain ACIAD2829 PF01171 PP-loop family ACIAD2832 PF01551 Peptidase family M23 ACIAD2832 PF10145 Phage-related minor tail protein ACIAD2832 PF01464 Transglycosylase SLT domain ACIAD2833 PF01435 Peptidase family M48 ACIAD2835 PF01769 Divalent cation transporter ACIAD2835 PF03448 MgtE intracellular N domain ACIAD2835 PF00571 CBS domain ACIAD2836 PF00873 AcrB/AcrD/AcrF family ACIAD2837 PF01219 Prokaryotic diacylglycerol kinase ACIAD2838 PF00118 TCP-1/cpn60 chaperonin family ACIAD2839 PF00166 Chaperonin 10 Kd subunit ACIAD2841 PF00781 Diacylglycerol kinase catalytic domain ACIAD2841 PF02142 MGS-like domain ACIAD2842 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ACIAD2842 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ACIAD2844 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ACIAD2844 PF01266 FAD dependent oxidoreductase ACIAD2847 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACIAD2847 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACIAD2850 PF02595 Glycerate kinase family ACIAD2852 PF00809 Pterin binding enzyme ACIAD2853 PF01434 Peptidase family M41 ACIAD2853 PF06480 FtsH Extracellular ACIAD2853 PF17862 AAA+ lid domain ACIAD2853 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD2854 PF01728 FtsJ-like methyltransferase ACIAD2855 PF01985 CRS1 / YhbY (CRM) domain ACIAD2860 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACIAD2860 PF00117 Glutamine amidotransferase class-I ACIAD2861 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACIAD2861 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIAD2861 PF02142 MGS-like domain ACIAD2862 PF01272 Transcription elongation factor, GreA/GreB, C-term ACIAD2862 PF03449 Transcription elongation factor, N-terminal ACIAD2863 PF00582 Universal stress protein family ACIAD2865 PF00582 Universal stress protein family ACIAD2867 PF00999 Sodium/hydrogen exchanger family ACIAD2869 PF04228 Putative neutral zinc metallopeptidase ACIAD2870 PF05661 Protein of unknown function (DUF808) ACIAD2871 PF00579 tRNA synthetases class I (W and Y) ACIAD2872 PF02629 CoA binding domain ACIAD2872 PF00549 CoA-ligase ACIAD2873 PF00549 CoA-ligase ACIAD2873 PF08442 ATP-grasp domain ACIAD2874 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIAD2874 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD2875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIAD2875 PF02817 e3 binding domain ACIAD2875 PF00364 Biotin-requiring enzyme ACIAD2876 PF16078 2-oxoglutarate dehydrogenase N-terminus ACIAD2876 PF02779 Transketolase, pyrimidine binding domain ACIAD2876 PF00676 Dehydrogenase E1 component ACIAD2876 PF16870 2-oxoglutarate dehydrogenase C-terminal ACIAD2879 PF13085 2Fe-2S iron-sulfur cluster binding domain ACIAD2880 PF02910 Fumarate reductase flavoprotein C-term ACIAD2880 PF00890 FAD binding domain ACIAD2881 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACIAD2882 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACIAD2886 PF00285 Citrate synthase, C-terminal domain ACIAD2888 PF00795 Carbon-nitrogen hydrolase ACIAD2888 PF02540 NAD synthase ACIAD2892 PF00037 4Fe-4S binding domain ACIAD2893 PF01467 Cytidylyltransferase-like ACIAD2894 PF01668 SmpB protein ACIAD2895 PF03358 NADPH-dependent FMN reductase ACIAD2897 PF01479 S4 domain ACIAD2897 PF00849 RNA pseudouridylate synthase ACIAD2898 PF13525 Outer membrane lipoprotein ACIAD2899 PF10410 DnaB-helicase binding domain of primase ACIAD2899 PF01807 CHC2 zinc finger ACIAD2899 PF08275 DNA primase catalytic core, N-terminal domain ACIAD2899 PF08278 DNA primase DnaG DnaB-binding ACIAD2900 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACIAD2900 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACIAD2900 PF01488 Shikimate / quinate 5-dehydrogenase ACIAD2902 PF03550 Outer membrane lipoprotein LolB ACIAD2903 PF08544 GHMP kinases C terminal ACIAD2903 PF00288 GHMP kinases N terminal domain ACIAD2907 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACIAD2907 PF14572 Phosphoribosyl synthetase-associated domain ACIAD2908 PF01386 Ribosomal L25p family ACIAD2909 PF01195 Peptidyl-tRNA hydrolase ACIAD2911 PF02261 Aspartate decarboxylase ACIAD2913 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACIAD2919 PF09335 SNARE associated Golgi protein ACIAD2922 PF05724 Thiopurine S-methyltransferase (TPMT) ACIAD2925 PF04545 Sigma-70, region 4 ACIAD2925 PF04539 Sigma-70 region 3 ACIAD2925 PF04542 Sigma-70 region 2 ACIAD2925 PF00140 Sigma-70 factor, region 1.2 ACIAD2925 PF04546 Sigma-70, non-essential region ACIAD2925 PF03979 Sigma-70 factor, region 1.1 ACIAD2926 PF04359 Protein of unknown function (DUF493) ACIAD2927 PF03099 Biotin/lipoate A/B protein ligase family ACIAD2929 PF00465 Iron-containing alcohol dehydrogenase ACIAD2930 PF13520 Amino acid permease ACIAD2931 PF03358 NADPH-dependent FMN reductase ACIAD2932 PF01638 HxlR-like helix-turn-helix ACIAD2933 PF00588 SpoU rRNA Methylase family ACIAD2934 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIAD2934 PF14824 Sirohaem biosynthesis protein central ACIAD2934 PF10414 Sirohaem synthase dimerisation region ACIAD2935 PF02403 Seryl-tRNA synthetase N-terminal domain ACIAD2935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIAD2937 PF03548 Outer membrane lipoprotein carrier protein LolA ACIAD2938 PF01016 Ribosomal L27 protein ACIAD2939 PF00829 Ribosomal prokaryotic L21 protein ACIAD2940 PF00348 Polyprenyl synthetase ACIAD2942 PF01569 PAP2 superfamily ACIAD2943 PF00529 HlyD membrane-fusion protein of T1SS ACIAD2943 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIAD2944 PF00873 AcrB/AcrD/AcrF family ACIAD2945 PF02321 Outer membrane efflux protein ACIAD2946 PF01906 Putative heavy-metal-binding ACIAD2947 PF01906 Putative heavy-metal-binding ACIAD2950 PF10458 Valyl tRNA synthetase tRNA binding arm ACIAD2950 PF00133 tRNA synthetases class I (I, L, M and V) ACIAD2950 PF08264 Anticodon-binding domain of tRNA ACIAD2958 PF00909 Ammonium Transporter Family ACIAD2960 PF08521 Two-component sensor kinase N-terminal ACIAD2960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD2960 PF00512 His Kinase A (phospho-acceptor) domain ACIAD2961 PF00486 Transcriptional regulatory protein, C terminal ACIAD2961 PF00072 Response regulator receiver domain ACIAD2963 PF07690 Major Facilitator Superfamily ACIAD2965 PF01734 Patatin-like phospholipase ACIAD2967 PF01145 SPFH domain / Band 7 family ACIAD2968 PF00348 Polyprenyl synthetase ACIAD2969 PF00324 Amino acid permease ACIAD2973 PF00486 Transcriptional regulatory protein, C terminal ACIAD2973 PF00072 Response regulator receiver domain ACIAD2975 PF13492 GAF domain ACIAD2975 PF13493 Domain of unknown function (DUF4118) ACIAD2975 PF00512 His Kinase A (phospho-acceptor) domain ACIAD2975 PF02702 Osmosensitive K+ channel His kinase sensor domain ACIAD2975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD2976 PF02669 K+-transporting ATPase, c chain ACIAD2978 PF03814 Potassium-transporting ATPase A subunit ACIAD2979 PF01037 Lrp/AsnC ligand binding domain ACIAD2979 PF13404 AsnC-type helix-turn-helix domain ACIAD2982 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIAD2982 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIAD2983 PF01011 PQQ enzyme repeat ACIAD2984 PF04966 Carbohydrate-selective porin, OprB family ACIAD2985 PF02515 CoA-transferase family III ACIAD2986 PF02311 AraC-like ligand binding domain ACIAD2986 PF12833 Helix-turn-helix domain ACIAD2988 PF00108 Thiolase, N-terminal domain ACIAD2988 PF02803 Thiolase, C-terminal domain ACIAD2989 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACIAD2989 PF00378 Enoyl-CoA hydratase/isomerase ACIAD2989 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACIAD2991 PF01734 Patatin-like phospholipase ACIAD2996 PF03006 Haemolysin-III related ACIAD2997 PF00083 Sugar (and other) transporter ACIAD2997 PF07690 Major Facilitator Superfamily ACIAD3000 PF00149 Calcineurin-like phosphoesterase ACIAD3000 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACIAD3001 PF13091 PLD-like domain ACIAD3005 PF13167 GTP-binding GTPase N-terminal ACIAD3005 PF01926 50S ribosome-binding GTPase ACIAD3005 PF16360 GTP-binding GTPase Middle Region ACIAD3008 PF00149 Calcineurin-like phosphoesterase ACIAD3009 PF00398 Ribosomal RNA adenine dimethylase ACIAD3010 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACIAD3012 PF00572 Ribosomal protein L13 ACIAD3013 PF00380 Ribosomal protein S9/S16 ACIAD3014 PF02798 Glutathione S-transferase, N-terminal domain ACIAD3014 PF00043 Glutathione S-transferase, C-terminal domain ACIAD3015 PF04386 Stringent starvation protein B ACIAD3021 PF00795 Carbon-nitrogen hydrolase ACIAD3022 PF01047 MarR family ACIAD3023 PF02566 OsmC-like protein ACIAD3024 PF00437 Type II/IV secretion system protein ACIAD3030 PF00476 DNA polymerase family A ACIAD3030 PF01612 3'-5' exonuclease ACIAD3030 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIAD3030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIAD3031 PF02325 YGGT family ACIAD3032 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACIAD3032 PF03807 NADP oxidoreductase coenzyme F420-dependent ACIAD3034 PF09179 TilS substrate binding domain ACIAD3034 PF11734 TilS substrate C-terminal domain ACIAD3034 PF01171 PP-loop family ACIAD3035 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACIAD3036 PF02541 Ppx/GppA phosphatase family ACIAD3037 PF00085 Thioredoxin ACIAD3038 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIAD3038 PF07497 Rho termination factor, RNA-binding domain ACIAD3038 PF07498 Rho termination factor, N-terminal domain ACIAD3040 PF00216 Bacterial DNA-binding protein ACIAD3041 PF03147 Ferredoxin-fold anticodon binding domain ACIAD3041 PF01588 Putative tRNA binding domain ACIAD3041 PF03484 tRNA synthetase B5 domain ACIAD3041 PF03483 B3/4 domain ACIAD3041 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACIAD3042 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACIAD3042 PF01409 tRNA synthetases class II core domain (F) ACIAD3046 PF00453 Ribosomal protein L20 ACIAD3047 PF01632 Ribosomal protein L35 ACIAD3050 PF09335 SNARE associated Golgi protein ACIAD3051 PF02798 Glutathione S-transferase, N-terminal domain ACIAD3051 PF00043 Glutathione S-transferase, C-terminal domain ACIAD3053 PF00011 Hsp20/alpha crystallin family ACIAD3054 PF00707 Translation initiation factor IF-3, C-terminal domain ACIAD3054 PF05198 Translation initiation factor IF-3, N-terminal domain ACIAD3055 PF03129 Anticodon binding domain ACIAD3055 PF02824 TGS domain ACIAD3055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIAD3055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIAD3056 PF13193 AMP-binding enzyme C-terminal domain ACIAD3056 PF00501 AMP-binding enzyme ACIAD3058 PF00381 PTS HPr component phosphorylation site ACIAD3059 PF03668 P-loop ATPase protein family ACIAD3060 PF02569 Pantoate-beta-alanine ligase ACIAD3061 PF02548 Ketopantoate hydroxymethyltransferase ACIAD3062 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACIAD3063 PF12626 Polymerase A arginine-rich C-terminus ACIAD3063 PF01743 Poly A polymerase head domain ACIAD3063 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIAD3064 PF10531 SLBB domain ACIAD3065 PF03819 MazG nucleotide pyrophosphohydrolase domain ACIAD3068 PF02824 TGS domain ACIAD3068 PF04607 Region found in RelA / SpoT proteins ACIAD3068 PF13291 ACT domain ACIAD3069 PF01938 TRAM domain ACIAD3069 PF05958 tRNA (Uracil-5-)-methyltransferase ACIAD3071 PF00291 Pyridoxal-phosphate dependent enzyme ACIAD3072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3072 PF00512 His Kinase A (phospho-acceptor) domain ACIAD3072 PF01627 Hpt domain ACIAD3072 PF00072 Response regulator receiver domain ACIAD3072 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACIAD3072 PF00672 HAMP domain ACIAD3073 PF00378 Enoyl-CoA hydratase/isomerase ACIAD3074 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIAD3074 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACIAD3075 PF01261 Xylose isomerase-like TIM barrel ACIAD3078 PF02233 NAD(P) transhydrogenase beta subunit ACIAD3079 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ACIAD3080 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACIAD3080 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACIAD3081 PF00892 EamA-like transporter family ACIAD3082 PF00376 MerR family regulatory protein ACIAD3082 PF09278 MerR, DNA binding ACIAD3084 PF07690 Major Facilitator Superfamily ACIAD3085 PF01207 Dihydrouridine synthase (Dus) ACIAD3088 PF00899 ThiF family ACIAD3090 PF00694 Aconitase C-terminal domain ACIAD3090 PF00330 Aconitase family (aconitate hydratase) ACIAD3091 PF01026 TatD related DNase ACIAD3095 PF00009 Elongation factor Tu GTP binding domain ACIAD3095 PF03144 Elongation factor Tu domain 2 ACIAD3095 PF16658 Class II release factor RF3, C-terminal domain ACIAD3099 PF03707 Bacterial signalling protein N terminal repeat ACIAD3099 PF00563 EAL domain ACIAD3099 PF00990 Diguanylate cyclase, GGDEF domain ACIAD3102 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACIAD3102 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACIAD3103 PF10369 Small subunit of acetolactate synthase ACIAD3104 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIAD3104 PF00205 Thiamine pyrophosphate enzyme, central domain ACIAD3104 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIAD3106 PF08264 Anticodon-binding domain of tRNA ACIAD3106 PF00133 tRNA synthetases class I (I, L, M and V) ACIAD3106 PF13603 Leucyl-tRNA synthetase, Domain 2 ACIAD3106 PF09334 tRNA synthetases class I (M) ACIAD3109 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIAD3110 PF02687 FtsX-like permease family ACIAD3110 PF12704 MacB-like periplasmic core domain ACIAD3110 PF00005 ABC transporter ACIAD3111 PF02321 Outer membrane efflux protein ACIAD3112 PF03781 Sulfatase-modifying factor enzyme 1 ACIAD3113 PF03781 Sulfatase-modifying factor enzyme 1 ACIAD3115 PF04717 Type VI secretion system, phage-baseplate injector ACIAD3118 PF00929 Exonuclease ACIAD3119 PF03193 RsgA GTPase ACIAD3121 PF00462 Glutaredoxin ACIAD3122 PF02556 Preprotein translocase subunit SecB ACIAD3123 PF07361 Cytochrome b562 ACIAD3125 PF02441 Flavoprotein ACIAD3125 PF04127 DNA / pantothenate metabolism flavoprotein ACIAD3126 PF04002 RadC-like JAB domain ACIAD3127 PF01062 Bestrophin, RFP-TM, chloride channel ACIAD3128 PF00248 Aldo/keto reductase family ACIAD3129 PF03466 LysR substrate binding domain ACIAD3129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3130 PF00043 Glutathione S-transferase, C-terminal domain ACIAD3130 PF13417 Glutathione S-transferase, N-terminal domain ACIAD3132 PF04279 Intracellular septation protein A ACIAD3133 PF03795 YCII-related domain ACIAD3135 PF01266 FAD dependent oxidoreductase ACIAD3135 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACIAD3136 PF00581 Rhodanese-like domain ACIAD3137 PF04461 Protein of unknown function (DUF520) ACIAD3139 PF03061 Thioesterase superfamily ACIAD3140 PF00085 Thioredoxin ACIAD3141 PF00561 alpha/beta hydrolase fold ACIAD3142 PF00753 Metallo-beta-lactamase superfamily ACIAD3142 PF04273 Putative phosphatase (DUF442) ACIAD3145 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD3145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIAD3146 PF01048 Phosphorylase superfamily ACIAD3149 PF01066 CDP-alcohol phosphatidyltransferase ACIAD3150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ACIAD3155 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACIAD3155 PF00056 lactate/malate dehydrogenase, NAD binding domain ACIAD3157 PF14718 Soluble lytic murein transglycosylase L domain ACIAD3157 PF01464 Transglycosylase SLT domain ACIAD3158 PF00919 Uncharacterized protein family UPF0004 ACIAD3158 PF01938 TRAM domain ACIAD3158 PF04055 Radical SAM superfamily ACIAD3159 PF02562 PhoH-like protein ACIAD3160 PF02130 Uncharacterized protein family UPF0054 ACIAD3161 PF00593 TonB dependent receptor ACIAD3161 PF07715 TonB-dependent Receptor Plug Domain ACIAD3166 PF01810 LysE type translocator ACIAD3167 PF03358 NADPH-dependent FMN reductase ACIAD3168 PF03631 Virulence factor BrkB ACIAD3169 PF03466 LysR substrate binding domain ACIAD3169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3170 PF07690 Major Facilitator Superfamily ACIAD3172 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACIAD3176 PF00512 His Kinase A (phospho-acceptor) domain ACIAD3176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3179 PF17876 Cold shock domain ACIAD3179 PF08206 Ribonuclease B OB domain ACIAD3179 PF00773 RNB domain ACIAD3179 PF00575 S1 RNA binding domain ACIAD3179 PF08461 Ribonuclease R winged-helix domain ACIAD3182 PF01432 Peptidase family M3 ACIAD3183 PF09526 Probable metal-binding protein (DUF2387) ACIAD3189 PF03937 Flavinator of succinate dehydrogenase ACIAD3191 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD3191 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD3191 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD3192 PF00743 Flavin-binding monooxygenase-like ACIAD3193 PF01196 Ribosomal protein L17 ACIAD3194 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACIAD3194 PF01000 RNA polymerase Rpb3/RpoA insert domain ACIAD3194 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACIAD3195 PF00163 Ribosomal protein S4/S9 N-terminal domain ACIAD3195 PF01479 S4 domain ACIAD3196 PF00411 Ribosomal protein S11 ACIAD3197 PF00416 Ribosomal protein S13/S18 ACIAD3198 PF00444 Ribosomal protein L36 ACIAD3199 PF00344 SecY translocase ACIAD3200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACIAD3201 PF00327 Ribosomal protein L30p/L7e ACIAD3202 PF00333 Ribosomal protein S5, N-terminal domain ACIAD3202 PF03719 Ribosomal protein S5, C-terminal domain ACIAD3203 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACIAD3204 PF00347 Ribosomal protein L6 ACIAD3205 PF00410 Ribosomal protein S8 ACIAD3206 PF00253 Ribosomal protein S14p/S29e ACIAD3207 PF00281 Ribosomal protein L5 ACIAD3207 PF00673 ribosomal L5P family C-terminus ACIAD3208 PF00467 KOW motif ACIAD3208 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACIAD3209 PF00238 Ribosomal protein L14p/L23e ACIAD3210 PF00366 Ribosomal protein S17 ACIAD3211 PF00831 Ribosomal L29 protein ACIAD3212 PF00252 Ribosomal protein L16p/L10e ACIAD3213 PF07650 KH domain ACIAD3213 PF00189 Ribosomal protein S3, C-terminal domain ACIAD3214 PF00237 Ribosomal protein L22p/L17e ACIAD3215 PF00203 Ribosomal protein S19 ACIAD3216 PF03947 Ribosomal Proteins L2, C-terminal domain ACIAD3216 PF00181 Ribosomal Proteins L2, RNA binding domain ACIAD3217 PF00276 Ribosomal protein L23 ACIAD3218 PF00573 Ribosomal protein L4/L1 family ACIAD3219 PF00297 Ribosomal protein L3 ACIAD3220 PF00338 Ribosomal protein S10p/S20e ACIAD3221 PF00117 Glutamine amidotransferase class-I ACIAD3222 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIAD3223 PF05872 Bacterial protein of unknown function (DUF853) ACIAD3225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3225 PF03466 LysR substrate binding domain ACIAD3226 PF00970 Oxidoreductase FAD-binding domain ACIAD3226 PF00042 Globin ACIAD3226 PF00175 Oxidoreductase NAD-binding domain ACIAD3227 PF02082 Transcriptional regulator ACIAD3228 PF01926 50S ribosome-binding GTPase ACIAD3230 PF00375 Sodium:dicarboxylate symporter family ACIAD3232 PF01553 Acyltransferase ACIAD3235 PF00271 Helicase conserved C-terminal domain ACIAD3235 PF00270 DEAD/DEAH box helicase ACIAD3235 PF17191 RecG wedge domain ACIAD3236 PF00156 Phosphoribosyl transferase domain ACIAD3237 PF00293 NUDIX domain ACIAD3238 PF03641 Possible lysine decarboxylase ACIAD3239 PF01544 CorA-like Mg2+ transporter protein ACIAD3243 PF02405 Permease MlaE ACIAD3244 PF00005 ABC transporter ACIAD3245 PF00271 Helicase conserved C-terminal domain ACIAD3245 PF00270 DEAD/DEAH box helicase ACIAD3246 PF00459 Inositol monophosphatase family ACIAD3247 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACIAD3247 PF02779 Transketolase, pyrimidine binding domain ACIAD3247 PF02780 Transketolase, C-terminal domain ACIAD3249 PF00925 GTP cyclohydrolase II ACIAD3250 PF01218 Coproporphyrinogen III oxidase ACIAD3254 PF00753 Metallo-beta-lactamase superfamily ACIAD3255 PF00762 Ferrochelatase ACIAD3257 PF01177 Asp/Glu/Hydantoin racemase ACIAD3262 PF12806 Acetyl-CoA dehydrogenase C-terminal like ACIAD3262 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACIAD3262 PF02770 Acyl-CoA dehydrogenase, middle domain ACIAD3262 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD3264 PF04024 PspC domain ACIAD3268 PF02091 Glycyl-tRNA synthetase alpha subunit ACIAD3269 PF02092 Glycyl-tRNA synthetase beta subunit ACIAD3269 PF05746 DALR anticodon binding domain ACIAD3273 PF00892 EamA-like transporter family ACIAD3274 PF03466 LysR substrate binding domain ACIAD3274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3278 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD3278 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD3281 PF00248 Aldo/keto reductase family ACIAD3283 PF08241 Methyltransferase domain ACIAD3288 PF13614 AAA domain ACIAD3289 PF01594 AI-2E family transporter ACIAD3291 PF12805 FUSC-like inner membrane protein yccS ACIAD3292 PF07690 Major Facilitator Superfamily ACIAD3295 PF02525 Flavodoxin-like fold ACIAD3296 PF03992 Antibiotic biosynthesis monooxygenase ACIAD3297 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIAD3298 PF00106 short chain dehydrogenase ACIAD3300 PF01565 FAD binding domain ACIAD3300 PF02913 FAD linked oxidases, C-terminal domain ACIAD3302 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIAD3302 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIAD3303 PF00892 EamA-like transporter family ACIAD3304 PF00892 EamA-like transporter family ACIAD3306 PF01925 Sulfite exporter TauE/SafE ACIAD3307 PF09157 Pseudouridine synthase II TruB, C-terminal ACIAD3307 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACIAD3307 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACIAD3308 PF03280 Proteobacterial lipase chaperone protein ACIAD3309 PF00561 alpha/beta hydrolase fold ACIAD3310 PF01245 Ribosomal protein L19 ACIAD3311 PF01746 tRNA (Guanine-1)-methyltransferase ACIAD3312 PF01782 RimM N-terminal domain ACIAD3312 PF05239 PRC-barrel domain ACIAD3313 PF00886 Ribosomal protein S16 ACIAD3314 PF07963 Prokaryotic N-terminal methylation motif ACIAD3314 PF00114 Pilin (bacterial filament) ACIAD3315 PF00114 Pilin (bacterial filament) ACIAD3315 PF07963 Prokaryotic N-terminal methylation motif ACIAD3322 PF02401 LytB protein ACIAD3324 PF00625 Guanylate kinase ACIAD3325 PF01192 RNA polymerase Rpb6 ACIAD3326 PF02824 TGS domain ACIAD3326 PF04607 Region found in RelA / SpoT proteins ACIAD3326 PF13291 ACT domain ACIAD3327 PF01042 Endoribonuclease L-PSP ACIAD3328 PF04324 BFD-like [2Fe-2S] binding domain ACIAD3330 PF00210 Ferritin-like domain ACIAD3334 PF13954 PapC N-terminal domain ACIAD3334 PF00577 Outer membrane usher protein ACIAD3334 PF13953 PapC C-terminal domain ACIAD3337 PF11846 Virulence factor membrane-bound polymerase, C-terminal ACIAD3337 PF04932 O-Antigen ligase ACIAD3337 PF15864 Protein glycosylation ligase ACIAD3338 PF00114 Pilin (bacterial filament) ACIAD3338 PF07963 Prokaryotic N-terminal methylation motif ACIAD3339 PF00107 Zinc-binding dehydrogenase ACIAD3339 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD3340 PF00795 Carbon-nitrogen hydrolase ACIAD3341 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ACIAD3341 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ACIAD3341 PF01276 Orn/Lys/Arg decarboxylase, major domain ACIAD3342 PF07478 D-ala D-ala ligase C-terminus ACIAD3342 PF01820 D-ala D-ala ligase N-terminus ACIAD3345 PF04536 TPM domain ACIAD3347 PF04011 LemA family ACIAD3349 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD3349 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACIAD3350 PF01493 GXGXG motif ACIAD3350 PF01645 Conserved region in glutamate synthase ACIAD3350 PF00310 Glutamine amidotransferases class-II ACIAD3350 PF04898 Glutamate synthase central domain ACIAD3353 PF01761 3-dehydroquinate synthase ACIAD3354 PF01202 Shikimate kinase ACIAD3355 PF00263 Bacterial type II and III secretion system protein ACIAD3355 PF03958 Bacterial type II/III secretion system short domain ACIAD3355 PF07660 Secretin and TonB N terminus short domain ACIAD3355 PF11741 AMIN domain ACIAD3361 PF17092 Penicillin-binding protein OB-like domain ACIAD3361 PF00905 Penicillin binding protein transpeptidase domain ACIAD3361 PF00912 Transglycosylase ACIAD3362 PF13847 Methyltransferase domain ACIAD3363 PF00953 Glycosyl transferase family 4 ACIAD3364 PF02875 Mur ligase family, glutamate ligase domain ACIAD3364 PF01225 Mur ligase family, catalytic domain ACIAD3364 PF08245 Mur ligase middle domain ACIAD3365 PF08245 Mur ligase middle domain ACIAD3365 PF02875 Mur ligase family, glutamate ligase domain ACIAD3365 PF01225 Mur ligase family, catalytic domain ACIAD3366 PF03717 Penicillin-binding Protein dimerisation domain ACIAD3366 PF00905 Penicillin binding protein transpeptidase domain ACIAD3368 PF01795 MraW methylase family ACIAD3371 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIAD3374 PF01545 Cation efflux family ACIAD3375 PF00873 AcrB/AcrD/AcrF family ACIAD3376 PF00529 HlyD membrane-fusion protein of T1SS ACIAD3376 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIAD3380 PF00005 ABC transporter ACIAD3380 PF12848 ABC transporter ACIAD3381 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIAD3381 PF00205 Thiamine pyrophosphate enzyme, central domain ACIAD3381 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIAD3382 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIAD3383 PF00106 short chain dehydrogenase ACIAD3386 PF16921 Tex protein YqgF-like domain ACIAD3386 PF09371 Tex-like protein N-terminal domain ACIAD3386 PF00575 S1 RNA binding domain ACIAD3386 PF17674 HHH domain ACIAD3388 PF00072 Response regulator receiver domain ACIAD3388 PF00486 Transcriptional regulatory protein, C terminal ACIAD3389 PF00672 HAMP domain ACIAD3389 PF00512 His Kinase A (phospho-acceptor) domain ACIAD3389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3390 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ACIAD3390 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ACIAD3391 PF00583 Acetyltransferase (GNAT) family ACIAD3395 PF00475 Imidazoleglycerol-phosphate dehydratase ACIAD3396 PF00117 Glutamine amidotransferase class-I ACIAD3397 PF05656 Protein of unknown function (DUF805) ACIAD3398 PF00977 Histidine biosynthesis protein ACIAD3399 PF00550 Phosphopantetheine attachment site ACIAD3399 PF00668 Condensation domain ACIAD3399 PF13193 AMP-binding enzyme C-terminal domain ACIAD3399 PF00501 AMP-binding enzyme ACIAD3399 PF00975 Thioesterase domain ACIAD3400 PF00005 ABC transporter ACIAD3400 PF00664 ABC transporter transmembrane region ACIAD3403 PF01636 Phosphotransferase enzyme family ACIAD3404 PF00977 Histidine biosynthesis protein ACIAD3412 PF02705 K+ potassium transporter ACIAD3418 PF13784 Fic/DOC family N-terminal ACIAD3418 PF02661 Fic/DOC family ACIAD3421 PF02321 Outer membrane efflux protein ACIAD3422 PF00873 AcrB/AcrD/AcrF family ACIAD3423 PF00873 AcrB/AcrD/AcrF family ACIAD3424 PF13533 Biotin-lipoyl like ACIAD3431 PF01420 Type I restriction modification DNA specificity domain ACIAD3432 PF12161 HsdM N-terminal domain ACIAD3432 PF02384 N-6 DNA Methylase ACIAD3441 PF00999 Sodium/hydrogen exchanger family ACIAD3441 PF02254 TrkA-N domain ACIAD3443 PF01593 Flavin containing amine oxidoreductase ACIAD3444 PF02678 Pirin ACIAD3444 PF05726 Pirin C-terminal cupin domain ACIAD3445 PF00171 Aldehyde dehydrogenase family ACIAD3446 PF00202 Aminotransferase class-III ACIAD3447 PF00392 Bacterial regulatory proteins, gntR family ACIAD3447 PF00155 Aminotransferase class I and II ACIAD3448 PF00324 Amino acid permease ACIAD3449 PF00436 Single-strand binding protein family ACIAD3450 PF07690 Major Facilitator Superfamily ACIAD3452 PF02581 Thiamine monophosphate synthase ACIAD3452 PF03070 TENA/THI-4/PQQC family ACIAD3452 PF08543 Phosphomethylpyrimidine kinase ACIAD3453 PF06942 GlpM protein ACIAD3455 PF17755 UvrA DNA-binding domain ACIAD3455 PF17760 UvrA interaction domain ACIAD3457 PF00990 Diguanylate cyclase, GGDEF domain ACIAD3457 PF17158 Membrane-associated sensor, integral membrane domain ACIAD3460 PF02028 BCCT, betaine/carnitine/choline family transporter ACIAD3463 PF00474 Sodium:solute symporter family ACIAD3464 PF04341 Protein of unknown function, DUF485 ACIAD3465 PF00512 His Kinase A (phospho-acceptor) domain ACIAD3465 PF09308 LuxQ, periplasmic ACIAD3465 PF00072 Response regulator receiver domain ACIAD3465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3469 PF00196 Bacterial regulatory proteins, luxR family ACIAD3469 PF00072 Response regulator receiver domain ACIAD3470 PF03358 NADPH-dependent FMN reductase ACIAD3471 PF00296 Luciferase-like monooxygenase ACIAD3473 PF00857 Isochorismatase family ACIAD3474 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACIAD3474 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ACIAD3475 PF13193 AMP-binding enzyme C-terminal domain ACIAD3475 PF16177 Acetyl-coenzyme A synthetase N-terminus ACIAD3475 PF00501 AMP-binding enzyme ACIAD3476 PF05656 Protein of unknown function (DUF805) ACIAD3477 PF05552 Conserved TM helix ACIAD3477 PF00924 Mechanosensitive ion channel ACIAD3479 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACIAD3484 PF01464 Transglycosylase SLT domain ACIAD3484 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIAD3486 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ACIAD3488 PF00005 ABC transporter ACIAD3489 PF01546 Peptidase family M20/M25/M40 ACIAD3489 PF07687 Peptidase dimerisation domain ACIAD3493 PF01042 Endoribonuclease L-PSP ACIAD3496 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIAD3498 PF03462 PCRF domain ACIAD3498 PF00472 RF-1 domain ACIAD3500 PF02272 DHHA1 domain ACIAD3500 PF01368 DHH family ACIAD3500 PF17768 RecJ OB domain ACIAD3501 PF01243 Pyridoxamine 5'-phosphate oxidase ACIAD3501 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACIAD3502 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIAD3502 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIAD3502 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIAD3502 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIAD3503 PF00571 CBS domain ACIAD3503 PF00478 IMP dehydrogenase / GMP reductase domain ACIAD3505 PF01169 Uncharacterized protein family UPF0016 ACIAD3506 PF02817 e3 binding domain ACIAD3506 PF00364 Biotin-requiring enzyme ACIAD3506 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIAD3507 PF00456 Transketolase, thiamine diphosphate binding domain ACIAD3507 PF17831 Pyruvate dehydrogenase E1 component middle domain ACIAD3508 PF01476 LysM domain ACIAD3508 PF01551 Peptidase family M23 ACIAD3510 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACIAD3511 PF12327 FtsZ family, C-terminal domain ACIAD3511 PF00091 Tubulin/FtsZ family, GTPase domain ACIAD3512 PF02491 SHS2 domain inserted in FTSA ACIAD3514 PF08478 POTRA domain, FtsQ-type ACIAD3514 PF03799 Cell division protein FtsQ ACIAD3515 PF01820 D-ala D-ala ligase N-terminus ACIAD3515 PF07478 D-ala D-ala ligase C-terminus ACIAD3516 PF02875 Mur ligase family, glutamate ligase domain ACIAD3516 PF01225 Mur ligase family, catalytic domain ACIAD3516 PF08245 Mur ligase middle domain ACIAD3517 PF04101 Glycosyltransferase family 28 C-terminal domain ACIAD3517 PF03033 Glycosyltransferase family 28 N-terminal domain ACIAD3518 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ACIAD3518 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ACIAD3522 PF01613 Flavin reductase like domain ACIAD3523 PF01717 Cobalamin-independent synthase, Catalytic domain ACIAD3523 PF08267 Cobalamin-independent synthase, N-terminal domain ACIAD3525 PF00156 Phosphoribosyl transferase domain ACIAD3526 PF03372 Endonuclease/Exonuclease/phosphatase family ACIAD3528 PF03960 ArsC family ACIAD3530 PF07859 alpha/beta hydrolase fold ACIAD3531 PF00990 Diguanylate cyclase, GGDEF domain ACIAD3531 PF07694 5TMR of 5TMR-LYT ACIAD3532 PF02683 Cytochrome C biogenesis protein transmembrane region ACIAD3532 PF11412 Disulphide bond corrector protein DsbC ACIAD3538 PF00576 HIUase/Transthyretin family ACIAD3540 PF01494 FAD binding domain ACIAD3541 PF03561 Allantoicase repeat ACIAD3542 PF04115 Ureidoglycolate lyase ACIAD3544 PF01751 Toprim domain ACIAD3544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3544 PF00986 DNA gyrase B subunit, carboxyl terminus ACIAD3544 PF00204 DNA gyrase B ACIAD3545 PF05728 Uncharacterised protein family (UPF0227) ACIAD3548 PF02600 Disulfide bond formation protein DsbB ACIAD3549 PF04262 Glutamate-cysteine ligase ACIAD3552 PF04286 Protein of unknown function (DUF445) ACIAD3553 PF00155 Aminotransferase class I and II ACIAD3554 PF01554 MatE ACIAD3555 PF00106 short chain dehydrogenase ACIAD3557 PF00072 Response regulator receiver domain ACIAD3557 PF00486 Transcriptional regulatory protein, C terminal ACIAD3558 PF00989 PAS fold ACIAD3558 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIAD3558 PF00512 His Kinase A (phospho-acceptor) domain ACIAD3558 PF11808 Phosphate regulon sensor protein PhoR ACIAD3560 PF02666 Phosphatidylserine decarboxylase ACIAD3561 PF00581 Rhodanese-like domain ACIAD3562 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ACIAD3562 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACIAD3563 PF02580 D-Tyr-tRNA(Tyr) deacylase ACIAD3570 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACIAD3570 PF00925 GTP cyclohydrolase II ACIAD3571 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACIAD3572 PF01029 NusB family ACIAD3573 PF00586 AIR synthase related protein, N-terminal domain ACIAD3573 PF02769 AIR synthase related protein, C-terminal domain ACIAD3574 PF04608 Phosphatidylglycerophosphatase A ACIAD3575 PF12804 MobA-like NTP transferase domain ACIAD3575 PF14602 Hexapeptide repeat of succinyl-transferase ACIAD3575 PF00132 Bacterial transferase hexapeptide (six repeats) ACIAD3576 PF01380 SIS domain ACIAD3581 PF14542 GCN5-related N-acetyl-transferase ACIAD3582 PF04463 Protein of unknown function (DUF523) ACIAD3583 PF01758 Sodium Bile acid symporter family ACIAD3584 PF00857 Isochorismatase family ACIAD3585 PF00701 Dihydrodipicolinate synthetase family ACIAD3587 PF01259 SAICAR synthetase ACIAD3589 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD3591 PF00528 Binding-protein-dependent transport system inner membrane component ACIAD3592 PF00005 ABC transporter ACIAD3593 PF01226 Formate/nitrite transporter ACIAD3594 PF03707 Bacterial signalling protein N terminal repeat ACIAD3594 PF00563 EAL domain ACIAD3594 PF00990 Diguanylate cyclase, GGDEF domain ACIAD3596 PF12002 MgsA AAA+ ATPase C terminal ACIAD3596 PF16193 AAA C-terminal domain ACIAD3596 PF00004 ATPase family associated with various cellular activities (AAA) ACIAD3597 PF00144 Beta-lactamase ACIAD3598 PF07995 Glucose / Sorbosone dehydrogenase ACIAD3599 PF13411 MerR HTH family regulatory protein ACIAD3601 PF03692 Putative zinc- or iron-chelating domain ACIAD3602 PF07043 Protein of unknown function (DUF1328) ACIAD3603 PF01738 Dienelactone hydrolase family ACIAD3606 PF10576 Iron-sulfur binding domain of endonuclease III ACIAD3606 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIAD3606 PF14815 NUDIX domain ACIAD3606 PF00633 Helix-hairpin-helix motif ACIAD3611 PF03352 Methyladenine glycosylase ACIAD3612 PF00107 Zinc-binding dehydrogenase ACIAD3612 PF08240 Alcohol dehydrogenase GroES-like domain ACIAD3613 PF00155 Aminotransferase class I and II ACIAD3613 PF00392 Bacterial regulatory proteins, gntR family ACIAD3615 PF03466 LysR substrate binding domain ACIAD3615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3616 PF00248 Aldo/keto reductase family ACIAD3617 PF07690 Major Facilitator Superfamily ACIAD3619 PF05173 Dihydrodipicolinate reductase, C-terminus ACIAD3619 PF01113 Dihydrodipicolinate reductase, N-terminus ACIAD3621 PF00684 DnaJ central domain ACIAD3621 PF01556 DnaJ C terminal domain ACIAD3621 PF00226 DnaJ domain ACIAD3624 PF00873 AcrB/AcrD/AcrF family ACIAD3626 PF00440 Bacterial regulatory proteins, tetR family ACIAD3627 PF00311 Phosphoenolpyruvate carboxylase ACIAD3628 PF00860 Permease family ACIAD3629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3629 PF03466 LysR substrate binding domain ACIAD3633 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIAD3636 PF00920 Dehydratase family ACIAD3637 PF00551 Formyl transferase ACIAD3637 PF02911 Formyl transferase, C-terminal domain ACIAD3638 PF01029 NusB family ACIAD3638 PF01189 16S rRNA methyltransferase RsmB/F ACIAD3639 PF02535 ZIP Zinc transporter ACIAD3641 PF00209 Sodium:neurotransmitter symporter family ACIAD3642 PF00171 Aldehyde dehydrogenase family ACIAD3645 PF15887 Putative zinc-binding metallo-peptidase ACIAD3645 PF10005 zinc-ribbon domain ACIAD3646 PF01965 DJ-1/PfpI family ACIAD3647 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACIAD3648 PF07859 alpha/beta hydrolase fold ACIAD3651 PF03466 LysR substrate binding domain ACIAD3651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIAD3652 PF01025 GrpE ACIAD3654 PF00012 Hsp70 protein ACIAD3657 PF13406 Transglycosylase SLT domain ACIAD3658 PF02222 ATP-grasp domain ACIAD3658 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACIAD3659 PF00731 AIR carboxylase ACIAD3663 PF08245 Mur ligase middle domain ACIAD3663 PF02875 Mur ligase family, glutamate ligase domain ACIAD3663 PF01225 Mur ligase family, catalytic domain ACIAD3665 PF01569 PAP2 superfamily ACIAD3666 PF03741 Integral membrane protein TerC family ACIAD3668 PF01979 Amidohydrolase family ACIAD3669 PF00156 Phosphoribosyl transferase domain ACIAD3673 PF13098 Thioredoxin-like domain ACIAD3673 PF10411 Disulfide bond isomerase protein N-terminus ACIAD3678 PF07690 Major Facilitator Superfamily ACIAD3679 PF13533 Biotin-lipoyl like ACIAD3680 PF01926 50S ribosome-binding GTPase ACIAD3680 PF10396 GTP-binding protein TrmE N-terminus ACIAD3680 PF12631 MnmE helical domain ACIAD3681 PF14849 YidC periplasmic domain ACIAD3681 PF02096 60Kd inner membrane protein ACIAD3682 PF01809 Putative membrane protein insertion efficiency factor ACIAD3683 PF00825 Ribonuclease P ACIAD3684 PF00468 Ribosomal protein L34