ACIAD0001 SM00382 ATPases associated with a variety of cellular activities ACIAD0001 SM00760 Bacterial dnaA protein helix-turn-helix domain ACIAD0002 SM00480 DNA polymerase III beta subunit ACIAD0004 SM00387 Histidine kinase-like ATPases ACIAD0004 SM00433 TopoisomeraseII ACIAD0007 SM00382 ATPases associated with a variety of cellular activities ACIAD0018 SM00248 ankyrin repeats ACIAD0023 SM00904 Riboflavin kinase ACIAD0030 SM00903 Flavin reductase like domain ACIAD0034 SM00382 ATPases associated with a variety of cellular activities ACIAD0037 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD0038 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD0063 SM00644 ACIAD0063 ACIAD0069 SM00226 Low molecular weight phosphatase family ACIAD0072 SM00984 UDP binding domain ACIAD0087 SM00984 UDP binding domain ACIAD0100 SM00984 UDP binding domain ACIAD0107 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD0107 SM00895 ACIAD0107 ACIAD0114 SM00344 helix_turn_helix ASNC type ACIAD0116 SM01005 Alanine racemase, C-terminal domain ACIAD0124 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0126 SM00858 ACIAD0126 ACIAD0128 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ACIAD0130 SM01130 ACIAD0130 ACIAD0132 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD0132 SM00895 ACIAD0132 ACIAD0135 SM00354 helix_turn _helix lactose operon repressor ACIAD0160 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0164 SM00836 DALR anticodon binding domain ACIAD0164 SM01016 Arginyl tRNA synthetase N terminal dom ACIAD0166 SM00919 Malic enzyme, NAD binding domain ACIAD0166 SM01274 ACIAD0166 ACIAD0168 SM00257 Lysin motif ACIAD0175 SM00382 ATPases associated with a variety of cellular activities ACIAD0187 SM00382 ATPases associated with a variety of cellular activities ACIAD0194 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0205 SM00382 ATPases associated with a variety of cellular activities ACIAD0220 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD0226 SM00641 Glycosyl hydrolases family 25 ACIAD0230 SM01091 Transporter associated domain ACIAD0234 SM00434 DNA Topoisomerase IV ACIAD0242 SM00382 ATPases associated with a variety of cellular activities ACIAD0244 SM00938 Nitrogen regulatory protein P-II ACIAD0257 SM00245 tail specific protease ACIAD0258 SM00382 ATPases associated with a variety of cellular activities ACIAD0258 SM00448 cheY-homologous receiver domain ACIAD0259 SM00387 Histidine kinase-like ATPases ACIAD0259 SM00388 His Kinase A (phosphoacceptor) domain ACIAD0260 SM00421 helix_turn_helix, Lux Regulon ACIAD0260 SM00448 cheY-homologous receiver domain ACIAD0267 SM00899 ACIAD0267 ACIAD0285 SM00448 cheY-homologous receiver domain ACIAD0285 SM00850 LytTr DNA-binding domain ACIAD0291 SM00528 Domain in histone-like proteins of HNS family ACIAD0293 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACIAD0295 SM00240 Forkhead associated domain ACIAD0301 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ACIAD0301 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ACIAD0302 SM00649 Ribosomal protein L11/L12 ACIAD0308 SM00663 RNA polymerase I subunit A N-terminus ACIAD0316 SM00387 Histidine kinase-like ATPases ACIAD0340 SM00465 GIY-YIG type nucleases (URI domain) ACIAD0344 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0352 SM00732 Likely ribonuclease with RNase H fold. ACIAD0355 SM00028 Tetratricopeptide repeats ACIAD0357 SM00967 RNA 2'-O ribose methyltransferase substrate binding ACIAD0368 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD0401 SM01387 ACIAD0401 ACIAD0402 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD0402 SM00322 K homology RNA-binding domain ACIAD0406 SM00271 DnaJ molecular chaperone homology domain ACIAD0409 SM00487 DEAD-like helicases superfamily ACIAD0409 SM00490 helicase superfamily c-terminal domain ACIAD0416 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD0416 SM01091 Transporter associated domain ACIAD0432 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD0438 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD0442 SM00363 S4 RNA-binding domain ACIAD0451 SM01060 ACIAD0451 ACIAD0454 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACIAD0469 SM01329 ACIAD0469 ACIAD0472 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD0473 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0476 SM00870 ACIAD0476 ACIAD0479 SM00859 Semialdehyde dehydrogenase, NAD binding domain ACIAD0487 SM00382 ATPases associated with a variety of cellular activities ACIAD0493 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ACIAD0493 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ACIAD0493 SM00493 ACIAD0493 ACIAD0496 SM00360 RNA recognition motif ACIAD0527 SM00671 Sel1-like repeats. ACIAD0530 SM00917 LeuA allosteric (dimerisation) domain ACIAD0531 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ACIAD0535 SM00382 ATPases associated with a variety of cellular activities ACIAD0535 SM00994 ClpX C4-type zinc finger ACIAD0535 SM01086 C-terminal, D2-small domain, of ClpB protein ACIAD0552 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACIAD0552 SM00245 tail specific protease ACIAD0554 SM00014 Acid phosphatase homologues ACIAD0556 SM00562 ACIAD0556 ACIAD0558 SM00028 Tetratricopeptide repeats ACIAD0564 SM00564 beta-propeller repeat ACIAD0567 SM00563 Phosphate acyltransferases ACIAD0580 SM00825 Beta-ketoacyl synthase ACIAD0582 SM00822 ACIAD0582 ACIAD0583 SM00825 Beta-ketoacyl synthase ACIAD0589 SM01323 ACIAD0589 ACIAD0595 SM00387 Histidine kinase-like ATPases ACIAD0595 SM00388 His Kinase A (phosphoacceptor) domain ACIAD0626 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACIAD0626 SM00387 Histidine kinase-like ATPases ACIAD0626 SM00388 His Kinase A (phosphoacceptor) domain ACIAD0627 SM00448 cheY-homologous receiver domain ACIAD0627 SM00862 Transcriptional regulatory protein, C terminal ACIAD0641 SM00342 helix_turn_helix, arabinose operon control protein ACIAD0646 SM00849 Metallo-beta-lactamase superfamily ACIAD0648 SM00957 SecA DEAD-like domain ACIAD0648 SM00958 SecA preprotein cross-linking domain ACIAD0654 SM00267 diguanylate cyclase ACIAD0703 SM00838 Elongation factor G C-terminus ACIAD0707 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ACIAD0707 SM01232 ACIAD0707 ACIAD0711 SM00671 Sel1-like repeats. ACIAD0726 SM00448 cheY-homologous receiver domain ACIAD0726 SM00862 Transcriptional regulatory protein, C terminal ACIAD0727 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACIAD0727 SM00387 Histidine kinase-like ATPases ACIAD0727 SM00388 His Kinase A (phosphoacceptor) domain ACIAD0735 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACIAD0736 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ACIAD0736 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIAD0766 SM00849 Metallo-beta-lactamase superfamily ACIAD0786 SM00448 cheY-homologous receiver domain ACIAD0787 SM00448 cheY-homologous receiver domain ACIAD0788 SM00260 Two component signalling adaptor domain ACIAD0790 SM00073 Histidine Phosphotransfer domain ACIAD0790 SM00260 Two component signalling adaptor domain ACIAD0790 SM00387 Histidine kinase-like ATPases ACIAD0790 SM00448 cheY-homologous receiver domain ACIAD0790 SM01231 ACIAD0790 ACIAD0822 SM00845 GatB domain ACIAD0830 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD0839 SM00382 ATPases associated with a variety of cellular activities ACIAD0839 SM00962 SRP54-type protein, GTPase domain ACIAD0839 SM00963 SRP54-type protein, helical bundle domain ACIAD0844 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD0847 SM00771 ZipA, C-terminal domain (FtsZ-binding) ACIAD0848 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACIAD0848 SM00292 breast cancer carboxy-terminal domain ACIAD0848 SM00532 Ligase N family ACIAD0861 SM00363 S4 RNA-binding domain ACIAD0870 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ACIAD0871 SM00822 ACIAD0871 ACIAD0873 SM00257 Lysin motif ACIAD0879 SM00825 Beta-ketoacyl synthase ACIAD0884 SM00838 Elongation factor G C-terminus ACIAD0884 SM00889 Elongation factor G, domain IV ACIAD0891 SM00843 ACIAD0891 ACIAD0897 SM00563 Phosphate acyltransferases ACIAD0911 SM00382 ATPases associated with a variety of cellular activities ACIAD0912 SM00382 ATPases associated with a variety of cellular activities ACIAD0915 SM00460 Transglutaminase/protease-like homologues ACIAD0923 SM01004 Delta-aminolevulinic acid dehydratase ACIAD0940 SM00912 haemagglutination activity domain ACIAD0965 SM00014 Acid phosphatase homologues ACIAD0968 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD0968 SM00895 ACIAD0968 ACIAD0969 SM00382 ATPases associated with a variety of cellular activities ACIAD0978 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD0978 SM00895 ACIAD0978 ACIAD0985 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD1015 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD1018 SM00861 Transketolase, pyrimidine binding domain ACIAD1021 SM00829 Enoylreductase ACIAD1027 SM01322 ACIAD1027 ACIAD1041 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1044 SM00357 Cold shock protein domain ACIAD1045 SM01018 B12 binding domain ACIAD1056 SM00947 Carbonic anhydrase ACIAD1058 SM00382 ATPases associated with a variety of cellular activities ACIAD1081 SM01091 Transporter associated domain ACIAD1092 SM00855 Phosphoglycerate mutase family ACIAD1093 SM00988 UreE urease accessory protein, N-terminal domain ACIAD1108 SM00478 endonuclease III ACIAD1110 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACIAD1115 SM00382 ATPases associated with a variety of cellular activities ACIAD1115 SM00464 Found in ATP-dependent protease La (LON) ACIAD1126 SM01011 Aminopeptidase P, N-terminal domain ACIAD1137 SM00479 ACIAD1137 ACIAD1138 SM00257 Lysin motif ACIAD1142 SM00382 ATPases associated with a variety of cellular activities ACIAD1149 SM00479 ACIAD1149 ACIAD1163 SM00965 Secretin and TonB N terminus short domain ACIAD1165 SM00421 helix_turn_helix, Lux Regulon ACIAD1188 SM00095 Transthyretin ACIAD1190 SM01329 ACIAD1190 ACIAD1197 SM00880 ACIAD1197 ACIAD1197 SM01118 ACIAD1197 ACIAD1204 SM00487 DEAD-like helicases superfamily ACIAD1204 SM00490 helicase superfamily c-terminal domain ACIAD1215 SM00382 ATPases associated with a variety of cellular activities ACIAD1225 SM00936 Penicillin-binding protein 5, C-terminal domain ACIAD1229 SM00257 Lysin motif ACIAD1253 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACIAD1255 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIAD1258 SM00788 Adenylosuccinate synthetase ACIAD1262 SM00100 Cyclic nucleotide-monophosphate binding domain ACIAD1262 SM00419 helix_turn_helix, cAMP Regulatory protein ACIAD1265 SM00382 ATPases associated with a variety of cellular activities ACIAD1265 SM01086 C-terminal, D2-small domain, of ClpB protein ACIAD1268 SM00981 ACIAD1268 ACIAD1283 SM00344 helix_turn_helix ASNC type ACIAD1293 SM01007 Class II Aldolase and Adducin N-terminal domain ACIAD1297 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD1298 SM00382 ATPases associated with a variety of cellular activities ACIAD1313 SM00357 Cold shock protein domain ACIAD1314 SM00487 DEAD-like helicases superfamily ACIAD1314 SM00490 helicase superfamily c-terminal domain ACIAD1318 SM00855 Phosphoglycerate mutase family ACIAD1336 SM00220 Serine/Threonine protein kinases, catalytic domain ACIAD1344 SM00344 helix_turn_helix ASNC type ACIAD1348 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACIAD1353 SM01264 ACIAD1353 ACIAD1360 SM00859 Semialdehyde dehydrogenase, NAD binding domain ACIAD1363 SM00382 ATPases associated with a variety of cellular activities ACIAD1363 SM01086 C-terminal, D2-small domain, of ClpB protein ACIAD1368 SM00382 ATPases associated with a variety of cellular activities ACIAD1368 SM00448 cheY-homologous receiver domain ACIAD1369 SM00091 PAS domain ACIAD1369 SM00387 Histidine kinase-like ATPases ACIAD1369 SM00388 His Kinase A (phosphoacceptor) domain ACIAD1371 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD1377 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACIAD1379 SM00935 Outer membrane protein (OmpH-like) ACIAD1385 SM00382 ATPases associated with a variety of cellular activities ACIAD1386 SM00363 S4 RNA-binding domain ACIAD1395 SM00487 DEAD-like helicases superfamily ACIAD1395 SM00490 helicase superfamily c-terminal domain ACIAD1395 SM00982 ACIAD1395 ACIAD1395 SM01058 CarD-like/TRCF domain ACIAD1397 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ACIAD1400 SM00271 DnaJ molecular chaperone homology domain ACIAD1408 SM00411 bacterial (prokaryotic) histone like domain ACIAD1410 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1421 SM00387 Histidine kinase-like ATPases ACIAD1421 SM00388 His Kinase A (phosphoacceptor) domain ACIAD1422 SM00448 cheY-homologous receiver domain ACIAD1422 SM00862 Transcriptional regulatory protein, C terminal ACIAD1429 SM00829 Enoylreductase ACIAD1431 SM00382 ATPases associated with a variety of cellular activities ACIAD1446 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ACIAD1448 SM00882 Coenzyme A transferase ACIAD1449 SM00882 Coenzyme A transferase ACIAD1454 SM00829 Enoylreductase ACIAD1455 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1462 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD1462 SM00895 ACIAD1462 ACIAD1464 SM00382 ATPases associated with a variety of cellular activities ACIAD1472 SM00965 Secretin and TonB N terminus short domain ACIAD1481 SM00840 ACIAD1481 ACIAD1482 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD1486 SM00382 ATPases associated with a variety of cellular activities ACIAD1488 SM00382 ATPases associated with a variety of cellular activities ACIAD1499 SM01034 Sensors of blue-light using FAD ACIAD1500 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ACIAD1500 SM00534 ATPase domain of DNA mismatch repair MUTS family ACIAD1509 SM00382 ATPases associated with a variety of cellular activities ACIAD1514 SM00382 ATPases associated with a variety of cellular activities ACIAD1515 SM00382 ATPases associated with a variety of cellular activities ACIAD1519 SM00382 ATPases associated with a variety of cellular activities ACIAD1523 SM00382 ATPases associated with a variety of cellular activities ACIAD1561 SM00903 Flavin reductase like domain ACIAD1576 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1578 SM00829 Enoylreductase ACIAD1585 SM00450 Rhodanese Homology Domain ACIAD1587 SM00382 ATPases associated with a variety of cellular activities ACIAD1599 SM00419 helix_turn_helix, cAMP Regulatory protein ACIAD1610 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1614 SM00833 Cobalamin synthesis protein cobW C-terminal domain ACIAD1622 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1624 SM00382 ATPases associated with a variety of cellular activities ACIAD1633 SM00388 His Kinase A (phosphoacceptor) domain ACIAD1634 SM00448 cheY-homologous receiver domain ACIAD1634 SM00862 Transcriptional regulatory protein, C terminal ACIAD1638 SM00530 Helix-turn-helix XRE-family like proteins ACIAD1648 SM00344 helix_turn_helix ASNC type ACIAD1665 SM00563 Phosphate acyltransferases ACIAD1667 SM00195 Dual specificity phosphatase, catalytic domain ACIAD1678 SM00849 Metallo-beta-lactamase superfamily ACIAD1684 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD1688 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD1695 SM00882 Coenzyme A transferase ACIAD1696 SM00882 Coenzyme A transferase ACIAD1702 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD1704 SM00882 Coenzyme A transferase ACIAD1705 SM00882 Coenzyme A transferase ACIAD1707 SM00998 Adenylosuccinate lyase C-terminus ACIAD1714 SM00710 Parallel beta-helix repeats ACIAD1716 SM00564 beta-propeller repeat ACIAD1717 SM00671 Sel1-like repeats. ACIAD1718 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD1728 SM00347 helix_turn_helix multiple antibiotic resistance protein ACIAD1736 SM00878 Biotin carboxylase C-terminal domain ACIAD1741 SM00833 Cobalamin synthesis protein cobW C-terminal domain ACIAD1743 SM00829 Enoylreductase ACIAD1747 SM00347 helix_turn_helix multiple antibiotic resistance protein ACIAD1748 SM00530 Helix-turn-helix XRE-family like proteins ACIAD1759 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ACIAD1769 SM00382 ATPases associated with a variety of cellular activities ACIAD1780 SM00965 Secretin and TonB N terminus short domain ACIAD1787 SM00357 Cold shock protein domain ACIAD1802 SM00530 Helix-turn-helix XRE-family like proteins ACIAD1811 SM00347 helix_turn_helix multiple antibiotic resistance protein ACIAD1817 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1826 SM00881 CoA binding domain ACIAD1827 SM00903 Flavin reductase like domain ACIAD1831 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACIAD1834 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1838 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1840 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1865 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ACIAD1873 SM00382 ATPases associated with a variety of cellular activities ACIAD1875 SM00342 helix_turn_helix, arabinose operon control protein ACIAD1879 SM00829 Enoylreductase ACIAD1881 SM00155 Phospholipase D. Active site motifs. ACIAD1884 SM00855 Phosphoglycerate mutase family ACIAD1897 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD1899 SM00382 ATPases associated with a variety of cellular activities ACIAD1902 SM00852 Probable molybdopterin binding domain ACIAD1903 SM00852 Probable molybdopterin binding domain ACIAD1906 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD1908 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ACIAD1913 SM01012 ACIAD1913 ACIAD1933 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ACIAD1935 SM00382 ATPases associated with a variety of cellular activities ACIAD1937 SM00382 ATPases associated with a variety of cellular activities ACIAD1941 SM00382 ATPases associated with a variety of cellular activities ACIAD1946 SM00226 Low molecular weight phosphatase family ACIAD1948 SM00357 Cold shock protein domain ACIAD1964 SM00220 Serine/Threonine protein kinases, catalytic domain ACIAD1966 SM00327 von Willebrand factor (vWF) type A domain ACIAD1967 SM00327 von Willebrand factor (vWF) type A domain ACIAD1969 SM00327 von Willebrand factor (vWF) type A domain ACIAD1970 SM00382 ATPases associated with a variety of cellular activities ACIAD1976 SM00822 ACIAD1976 ACIAD1984 SM00831 Cation transporter/ATPase, N-terminus ACIAD2001 SM01192 ACIAD2001 ACIAD2001 SM01193 ACIAD2001 ACIAD2012 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2012 SM00871 Bacterial transcription activator, effector binding domain ACIAD2014 SM00382 ATPases associated with a variety of cellular activities ACIAD2022 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2032 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD2034 SM00867 YceI-like domain ACIAD2035 SM00861 Transketolase, pyrimidine binding domain ACIAD2045 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD2045 SM00876 Biotin and Thiamin Synthesis associated domain ACIAD2050 SM00563 Phosphate acyltransferases ACIAD2053 SM00344 helix_turn_helix ASNC type ACIAD2056 SM00382 ATPases associated with a variety of cellular activities ACIAD2061 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD2061 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ACIAD2069 SM00382 ATPases associated with a variety of cellular activities ACIAD2069 SM00930 ACIAD2069 ACIAD2079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACIAD2084 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2088 SM00870 ACIAD2088 ACIAD2089 SM00481 DNA polymerase alpha chain like domain ACIAD2096 SM00267 diguanylate cyclase ACIAD2102 SM00382 ATPases associated with a variety of cellular activities ACIAD2102 SM00487 DEAD-like helicases superfamily ACIAD2102 SM00490 helicase superfamily c-terminal domain ACIAD2102 SM00847 Helicase associated domain (HA2) Add an annotation ACIAD2105 SM01236 ACIAD2105 ACIAD2110 SM01034 Sensors of blue-light using FAD ACIAD2117 SM01006 Siderophore biosynthesis protein domain ACIAD2125 SM01034 Sensors of blue-light using FAD ACIAD2129 SM01034 Sensors of blue-light using FAD ACIAD2148 SM00060 Fibronectin type 3 domain ACIAD2181 SM00530 Helix-turn-helix XRE-family like proteins ACIAD2185 SM00382 ATPases associated with a variety of cellular activities ACIAD2190 SM00530 Helix-turn-helix XRE-family like proteins ACIAD2201 SM00460 Transglutaminase/protease-like homologues ACIAD2206 SM00841 Elongation factor P, C-terminal ACIAD2206 SM01185 ACIAD2206 ACIAD2209 SM00052 Putative diguanylate phosphodiesterase ACIAD2223 SM00830 Chorismate mutase type II ACIAD2238 SM00387 Histidine kinase-like ATPases ACIAD2238 SM00388 His Kinase A (phosphoacceptor) domain ACIAD2239 SM00448 cheY-homologous receiver domain ACIAD2239 SM00862 Transcriptional regulatory protein, C terminal ACIAD2242 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACIAD2242 SM00267 diguanylate cyclase ACIAD2245 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD2245 SM00895 ACIAD2245 ACIAD2257 SM00479 ACIAD2257 ACIAD2259 SM00382 ATPases associated with a variety of cellular activities ACIAD2275 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD2279 SM00267 diguanylate cyclase ACIAD2282 SM00996 S-adenosyl-L-homocysteine hydrolase ACIAD2282 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACIAD2287 SM00919 Malic enzyme, NAD binding domain ACIAD2287 SM01274 ACIAD2287 ACIAD2296 SM00382 ATPases associated with a variety of cellular activities ACIAD2296 SM00962 SRP54-type protein, GTPase domain ACIAD2296 SM00963 SRP54-type protein, helical bundle domain ACIAD2305 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD2307 SM00382 ATPases associated with a variety of cellular activities ACIAD2310 SM00474 3'-5' exonuclease ACIAD2312 SM00493 ACIAD2312 ACIAD2317 SM01324 ACIAD2317 ACIAD2331 SM01091 Transporter associated domain ACIAD2333 SM00347 helix_turn_helix multiple antibiotic resistance protein ACIAD2338 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2341 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ACIAD2342 SM00530 Helix-turn-helix XRE-family like proteins ACIAD2346 SM00411 bacterial (prokaryotic) histone like domain ACIAD2347 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD2352 SM00986 Uracil DNA glycosylase superfamily ACIAD2352 SM00987 UreE urease accessory protein, C-terminal domain ACIAD2365 SM00382 ATPases associated with a variety of cellular activities ACIAD2366 SM00470 ParB-like nuclease domain ACIAD2375 SM00853 MutL C terminal dimerisation domain ACIAD2375 SM01340 ACIAD2375 ACIAD2380 SM00363 S4 RNA-binding domain ACIAD2393 SM00530 Helix-turn-helix XRE-family like proteins ACIAD2408 SM00905 Dihydroneopterin aldolase ACIAD2416 SM00822 ACIAD2416 ACIAD2418 SM00937 ACIAD2418 ACIAD2421 SM00052 Putative diguanylate phosphodiesterase ACIAD2421 SM00267 diguanylate cyclase ACIAD2434 SM01005 Alanine racemase, C-terminal domain ACIAD2436 SM00460 Transglutaminase/protease-like homologues ACIAD2440 SM01228 ACIAD2440 ACIAD2447 SM00798 AICARFT/IMPCHase bienzyme ACIAD2447 SM00851 MGS-like domain ACIAD2448 SM01209 ACIAD2448 ACIAD2448 SM01210 ACIAD2448 ACIAD2450 SM00382 ATPases associated with a variety of cellular activities ACIAD2450 SM00930 ACIAD2450 ACIAD2452 SM00849 Metallo-beta-lactamase superfamily ACIAD2458 SM01230 ACIAD2458 ACIAD2465 SM00463 Small MutS-related domain ACIAD2467 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACIAD2468 SM01092 CO dehydrogenase flavoprotein C-terminal domain ACIAD2500 SM00421 helix_turn_helix, Lux Regulon ACIAD2500 SM00448 cheY-homologous receiver domain ACIAD2501 SM00387 Histidine kinase-like ATPases ACIAD2501 SM00388 His Kinase A (phosphoacceptor) domain ACIAD2501 SM00448 cheY-homologous receiver domain ACIAD2507 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD2513 SM00882 Coenzyme A transferase ACIAD2514 SM00882 Coenzyme A transferase ACIAD2517 SM00878 Biotin carboxylase C-terminal domain ACIAD2518 SM00796 Allophanate hydrolase subunit 1 ACIAD2518 SM00797 Allophanate hydrolase subunit 2 ACIAD2523 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD2523 SM00895 ACIAD2523 ACIAD2528 SM01230 ACIAD2528 ACIAD2530 SM00530 Helix-turn-helix XRE-family like proteins ACIAD2544 SM00903 Flavin reductase like domain ACIAD2547 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD2547 SM00895 ACIAD2547 ACIAD2560 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ACIAD2565 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIAD2569 SM00487 DEAD-like helicases superfamily ACIAD2569 SM00490 helicase superfamily c-terminal domain ACIAD2572 SM00267 diguanylate cyclase ACIAD2581 SM00358 Double-stranded RNA binding motif ACIAD2581 SM00535 Ribonuclease III family ACIAD2584 SM00838 Elongation factor G C-terminus ACIAD2586 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACIAD2596 SM00382 ATPases associated with a variety of cellular activities ACIAD2604 SM00867 YceI-like domain ACIAD2612 SM01211 ACIAD2612 ACIAD2613 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACIAD2614 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACIAD2615 SM00382 ATPases associated with a variety of cellular activities ACIAD2639 SM00849 Metallo-beta-lactamase superfamily ACIAD2640 SM00382 ATPases associated with a variety of cellular activities ACIAD2652 SM00434 DNA Topoisomerase IV ACIAD2654 SM00893 Electron transfer flavoprotein domain ACIAD2655 SM00893 Electron transfer flavoprotein domain ACIAD2664 SM00382 ATPases associated with a variety of cellular activities ACIAD2665 SM00978 ACIAD2665 ACIAD2672 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2674 SM00903 Flavin reductase like domain ACIAD2678 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACIAD2694 SM00382 ATPases associated with a variety of cellular activities ACIAD2694 SM01086 C-terminal, D2-small domain, of ClpB protein ACIAD2738 SM00829 Enoylreductase ACIAD2745 SM00671 Sel1-like repeats. ACIAD2759 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD2759 SM00895 ACIAD2759 ACIAD2767 SM01006 Siderophore biosynthesis protein domain ACIAD2771 SM00823 Phosphopantetheine attachment site ACIAD2778 SM00342 helix_turn_helix, arabinose operon control protein ACIAD2784 SM00912 haemagglutination activity domain ACIAD2817 SM00346 helix_turn_helix isocitrate lyase regulation ACIAD2835 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD2835 SM00924 MgtE intracellular N domain ACIAD2839 SM00883 Chaperonin 10 Kd subunit ACIAD2841 SM00046 Diacylglycerol kinase catalytic domain (presumed) ACIAD2853 SM00382 ATPases associated with a variety of cellular activities ACIAD2855 SM01103 ACIAD2855 ACIAD2860 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ACIAD2861 SM00851 MGS-like domain ACIAD2861 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACIAD2872 SM00881 CoA binding domain ACIAD2876 SM00861 Transketolase, pyrimidine binding domain ACIAD2897 SM00363 S4 RNA-binding domain ACIAD2899 SM00400 zinc finger ACIAD2899 SM00493 ACIAD2899 ACIAD2901 SM00028 Tetratricopeptide repeats ACIAD2907 SM01400 ACIAD2907 ACIAD2917 SM00450 Rhodanese Homology Domain ACIAD2920 SM00422 helix_turn_helix, mercury resistance ACIAD2942 SM00014 Acid phosphatase homologues ACIAD2960 SM00387 Histidine kinase-like ATPases ACIAD2960 SM00388 His Kinase A (phosphoacceptor) domain ACIAD2961 SM00448 cheY-homologous receiver domain ACIAD2961 SM00862 Transcriptional regulatory protein, C terminal ACIAD2964 SM00563 Phosphate acyltransferases ACIAD2967 SM00244 prohibitin homologues ACIAD2973 SM00448 cheY-homologous receiver domain ACIAD2973 SM00862 Transcriptional regulatory protein, C terminal ACIAD2975 SM00387 Histidine kinase-like ATPases ACIAD2975 SM00388 His Kinase A (phosphoacceptor) domain ACIAD2979 SM00344 helix_turn_helix ASNC type ACIAD2983 SM00564 beta-propeller repeat ACIAD2986 SM00342 helix_turn_helix, arabinose operon control protein ACIAD3001 SM00155 Phospholipase D. Active site motifs. ACIAD3002 SM00563 Phosphate acyltransferases ACIAD3009 SM00650 Ribosomal RNA adenine dimethylases ACIAD3019 SM00331 Sigma factor PP2C-like phosphatases ACIAD3022 SM00347 helix_turn_helix multiple antibiotic resistance protein ACIAD3024 SM00382 ATPases associated with a variety of cellular activities ACIAD3030 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ACIAD3030 SM00474 3'-5' exonuclease ACIAD3030 SM00475 5'-3' exonuclease ACIAD3030 SM00482 DNA polymerase A domain ACIAD3034 SM00977 TilS substrate C-terminal domain ACIAD3038 SM00357 Cold shock protein domain ACIAD3038 SM00382 ATPases associated with a variety of cellular activities ACIAD3038 SM00959 Rho termination factor, N-terminal domain ACIAD3040 SM00411 bacterial (prokaryotic) histone like domain ACIAD3041 SM00873 B3/4 domain ACIAD3041 SM00874 tRNA synthetase B5 domain ACIAD3041 SM00896 Ferredoxin-fold anticodon binding domain ACIAD3055 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACIAD3064 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACIAD3068 SM00954 Region found in RelA / SpoT proteins ACIAD3072 SM00387 Histidine kinase-like ATPases ACIAD3072 SM00388 His Kinase A (phosphoacceptor) domain ACIAD3072 SM00448 cheY-homologous receiver domain ACIAD3080 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ACIAD3080 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ACIAD3082 SM00422 helix_turn_helix, mercury resistance ACIAD3099 SM00052 Putative diguanylate phosphodiesterase ACIAD3099 SM00267 diguanylate cyclase ACIAD3110 SM00382 ATPases associated with a variety of cellular activities ACIAD3118 SM00479 ACIAD3118 ACIAD3120 SM00450 Rhodanese Homology Domain ACIAD3131 SM00481 DNA polymerase alpha chain like domain ACIAD3136 SM00450 Rhodanese Homology Domain ACIAD3144 SM00634 Bacterial Ig-like domain (group 1) ACIAD3151 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ACIAD3158 SM00729 Elongator protein 3, MiaB family, Radical SAM ACIAD3176 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACIAD3176 SM00387 Histidine kinase-like ATPases ACIAD3176 SM00388 His Kinase A (phosphoacceptor) domain ACIAD3179 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD3179 SM00955 ACIAD3179 ACIAD3194 SM00662 RNA polymerases D ACIAD3195 SM00363 S4 RNA-binding domain ACIAD3195 SM01390 ACIAD3195 ACIAD3208 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ACIAD3209 SM01374 ACIAD3209 ACIAD3213 SM00322 K homology RNA-binding domain ACIAD3216 SM01382 ACIAD3216 ACIAD3216 SM01383 ACIAD3216 ACIAD3220 SM01403 ACIAD3220 ACIAD3232 SM00563 Phosphate acyltransferases ACIAD3235 SM00487 DEAD-like helicases superfamily ACIAD3235 SM00490 helicase superfamily c-terminal domain ACIAD3244 SM00382 ATPases associated with a variety of cellular activities ACIAD3245 SM00487 DEAD-like helicases superfamily ACIAD3245 SM00490 helicase superfamily c-terminal domain ACIAD3247 SM00861 Transketolase, pyrimidine binding domain ACIAD3254 SM00849 Metallo-beta-lactamase superfamily ACIAD3266 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD3324 SM00072 Guanylate kinase homologues. ACIAD3325 SM01409 ACIAD3325 ACIAD3326 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACIAD3326 SM00954 Region found in RelA / SpoT proteins ACIAD3332 SM00972 Spore Coat Protein U domain ACIAD3333 SM00972 Spore Coat Protein U domain ACIAD3339 SM00829 Enoylreductase ACIAD3355 SM00965 Secretin and TonB N terminus short domain ACIAD3360 SM00842 Cell division protein FtsA ACIAD3380 SM00382 ATPases associated with a variety of cellular activities ACIAD3383 SM00822 ACIAD3383 ACIAD3384 SM00947 Carbonic anhydrase ACIAD3386 SM00316 Ribosomal protein S1-like RNA-binding domain ACIAD3386 SM00732 Likely ribonuclease with RNase H fold. ACIAD3388 SM00448 cheY-homologous receiver domain ACIAD3388 SM00862 Transcriptional regulatory protein, C terminal ACIAD3389 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACIAD3389 SM00387 Histidine kinase-like ATPases ACIAD3389 SM00388 His Kinase A (phosphoacceptor) domain ACIAD3400 SM00382 ATPases associated with a variety of cellular activities ACIAD3406 SM00342 helix_turn_helix, arabinose operon control protein ACIAD3408 SM00477 DNA/RNA non-specific endonuclease ACIAD3408 SM00892 DNA/RNA non-specific endonuclease ACIAD3430 SM00487 DEAD-like helicases superfamily ACIAD3447 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD3457 SM00267 diguanylate cyclase ACIAD3465 SM00387 Histidine kinase-like ATPases ACIAD3465 SM00388 His Kinase A (phosphoacceptor) domain ACIAD3465 SM00448 cheY-homologous receiver domain ACIAD3469 SM00421 helix_turn_helix, Lux Regulon ACIAD3469 SM00448 cheY-homologous receiver domain ACIAD3472 SM00344 helix_turn_helix ASNC type ACIAD3484 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD3485 SM01007 Class II Aldolase and Adducin N-terminal domain ACIAD3487 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD3488 SM00382 ATPases associated with a variety of cellular activities ACIAD3497 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ACIAD3498 SM00937 ACIAD3498 ACIAD3503 SM00116 Domain in cystathionine beta-synthase and other proteins. ACIAD3503 SM01240 ACIAD3503 ACIAD3511 SM00864 Tubulin/FtsZ family, GTPase domain ACIAD3511 SM00865 Tubulin/FtsZ family, C-terminal domain ACIAD3512 SM00842 Cell division protein FtsA ACIAD3522 SM00903 Flavin reductase like domain ACIAD3531 SM00267 diguanylate cyclase ACIAD3544 SM00387 Histidine kinase-like ATPases ACIAD3544 SM00433 TopoisomeraseII ACIAD3555 SM00822 ACIAD3555 ACIAD3557 SM00448 cheY-homologous receiver domain ACIAD3557 SM00862 Transcriptional regulatory protein, C terminal ACIAD3558 SM00387 Histidine kinase-like ATPases ACIAD3558 SM00388 His Kinase A (phosphoacceptor) domain ACIAD3561 SM00450 Rhodanese Homology Domain ACIAD3585 SM01130 ACIAD3585 ACIAD3588 SM00062 Bacterial periplasmic substrate-binding proteins ACIAD3592 SM00382 ATPases associated with a variety of cellular activities ACIAD3594 SM00052 Putative diguanylate phosphodiesterase ACIAD3594 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACIAD3594 SM00267 diguanylate cyclase ACIAD3596 SM00382 ATPases associated with a variety of cellular activities ACIAD3599 SM00422 helix_turn_helix, mercury resistance ACIAD3606 SM00478 endonuclease III ACIAD3612 SM00829 Enoylreductase ACIAD3613 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACIAD3621 SM00271 DnaJ molecular chaperone homology domain ACIAD3650 SM00849 Metallo-beta-lactamase superfamily ACIAD3659 SM01001 AIR carboxylase ACIAD3665 SM00014 Acid phosphatase homologues ACIAD3682 SM01234 ACIAD3682