locus-tag class description NDN12_00005 PF00308 Bacterial dnaA protein NDN12_00005 PF08299 Bacterial dnaA protein helix-turn-helix NDN12_00005 PF11638 DnaA N-terminal domain NDN12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NDN12_00010 PF02767 DNA polymerase III beta subunit, central domain NDN12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NDN12_00015 PF02463 RecF/RecN/SMC N terminal domain NDN12_00020 PF00204 DNA gyrase B NDN12_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NDN12_00020 PF18053 DNA gyrase B subunit insert domain NDN12_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_00020 PF01751 Toprim domain NDN12_00035 PF09335 SNARE associated Golgi protein NDN12_00040 PF00005 ABC transporter NDN12_00040 PF12848 ABC transporter NDN12_00065 PF01521 Iron-sulphur cluster biosynthesis NDN12_00070 PF03702 Anhydro-N-acetylmuramic acid kinase NDN12_00075 PF00579 tRNA synthetases class I (W and Y) NDN12_00130 PF00171 Aldehyde dehydrogenase family NDN12_00135 PF00209 Sodium:neurotransmitter symporter family NDN12_00145 PF01189 16S rRNA methyltransferase RsmB/F NDN12_00145 PF01029 NusB family NDN12_00150 PF02911 Formyl transferase, C-terminal domain NDN12_00150 PF00551 Formyl transferase NDN12_00155 PF00920 Dehydratase family NDN12_00170 PF03466 LysR substrate binding domain NDN12_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_00175 PF03466 LysR substrate binding domain NDN12_00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_00185 PF00860 Permease family NDN12_00190 PF00311 Phosphoenolpyruvate carboxylase NDN12_00195 PF00440 Bacterial regulatory proteins, tetR family NDN12_00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_00205 PF00873 AcrB/AcrD/AcrF family NDN12_00215 PF00226 DnaJ domain NDN12_00215 PF00684 DnaJ central domain NDN12_00215 PF01556 DnaJ C terminal domain NDN12_00220 PF05173 Dihydrodipicolinate reductase, C-terminus NDN12_00220 PF01113 Dihydrodipicolinate reductase, N-terminus NDN12_00230 PF07690 Major Facilitator Superfamily NDN12_00235 PF00248 Aldo/keto reductase family NDN12_00240 PF03466 LysR substrate binding domain NDN12_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_00250 PF00392 Bacterial regulatory proteins, gntR family NDN12_00250 PF00155 Aminotransferase class I and II NDN12_00255 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_00255 PF00107 Zinc-binding dehydrogenase NDN12_00260 PF03352 Methyladenine glycosylase NDN12_00275 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN12_00275 PF14815 NUDIX domain NDN12_00275 PF00633 Helix-hairpin-helix motif NDN12_00275 PF10576 Iron-sulfur binding domain of endonuclease III NDN12_00285 PF07043 Protein of unknown function (DUF1328) NDN12_00290 PF03692 Putative zinc- or iron-chelating domain NDN12_00295 PF07995 Glucose / Sorbosone dehydrogenase NDN12_00300 PF00144 Beta-lactamase NDN12_00305 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_00305 PF12002 MgsA AAA+ ATPase C terminal NDN12_00305 PF16193 AAA C-terminal domain NDN12_00310 PF00892 EamA-like transporter family NDN12_00325 PF07715 TonB-dependent Receptor Plug Domain NDN12_00325 PF00593 TonB dependent receptor NDN12_00330 PF01259 SAICAR synthetase NDN12_00340 PF00701 Dihydrodipicolinate synthetase family NDN12_00345 PF00857 Isochorismatase family NDN12_00350 PF01037 Lrp/AsnC ligand binding domain NDN12_00360 PF01380 SIS domain NDN12_00365 PF12804 MobA-like NTP transferase domain NDN12_00365 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_00365 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_00370 PF04608 Phosphatidylglycerophosphatase A NDN12_00375 PF00586 AIR synthase related protein, N-terminal domain NDN12_00375 PF02769 AIR synthase related protein, C-terminal domain NDN12_00380 PF01029 NusB family NDN12_00385 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDN12_00390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN12_00390 PF00925 GTP cyclohydrolase II NDN12_00415 PF02580 D-Tyr-tRNA(Tyr) deacylase NDN12_00420 PF00199 Catalase NDN12_00420 PF06628 Catalase-related immune-responsive NDN12_00430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN12_00430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDN12_00440 PF00581 Rhodanese-like domain NDN12_00445 PF02666 Phosphatidylserine decarboxylase NDN12_00455 PF09208 Restriction endonuclease MspI NDN12_00460 PF00145 C-5 cytosine-specific DNA methylase NDN12_00480 PF03466 LysR substrate binding domain NDN12_00480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_00485 PF03466 LysR substrate binding domain NDN12_00485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_00500 PF00512 His Kinase A (phospho-acceptor) domain NDN12_00500 PF00989 PAS fold NDN12_00500 PF11808 Phosphate regulon sensor protein PhoR NDN12_00505 PF00486 Transcriptional regulatory protein, C terminal NDN12_00505 PF00072 Response regulator receiver domain NDN12_00515 PF00106 short chain dehydrogenase NDN12_00520 PF01554 MatE NDN12_00525 PF00155 Aminotransferase class I and II NDN12_00530 PF04286 Protein of unknown function (DUF445) NDN12_00545 PF04262 Glutamate-cysteine ligase NDN12_00550 PF02600 Disulfide bond formation protein DsbB NDN12_00555 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_00555 PF04717 Type VI secretion system, phage-baseplate injector NDN12_00555 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_00560 PF00877 NlpC/P60 family NDN12_00560 PF01476 LysM domain NDN12_00590 PF05728 Uncharacterised protein family (UPF0227) NDN12_00595 PF01751 Toprim domain NDN12_00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_00595 PF00986 DNA gyrase B subunit, carboxyl terminus NDN12_00595 PF00204 DNA gyrase B NDN12_00605 PF02653 Branched-chain amino acid transport system / permease component NDN12_00615 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN12_00615 PF00005 ABC transporter NDN12_00620 PF00005 ABC transporter NDN12_00645 PF12796 Ankyrin repeats (3 copies) NDN12_00645 PF07722 Peptidase C26 NDN12_00655 PF11412 Disulphide bond corrector protein DsbC NDN12_00655 PF02683 Cytochrome C biogenesis protein transmembrane region NDN12_00665 PF17151 Periplasmic sensor domain NDN12_00665 PF00990 Diguanylate cyclase, GGDEF domain NDN12_00670 PF07859 alpha/beta hydrolase fold NDN12_00680 PF03960 ArsC family NDN12_00685 PF03372 Endonuclease/Exonuclease/phosphatase family NDN12_00690 PF00156 Phosphoribosyl transferase domain NDN12_00695 PF01820 D-ala D-ala ligase N-terminus NDN12_00695 PF07478 D-ala D-ala ligase C-terminus NDN12_00705 PF00106 short chain dehydrogenase NDN12_00720 PF01040 UbiA prenyltransferase family NDN12_00730 PF01565 FAD binding domain NDN12_00730 PF04030 D-arabinono-1,4-lactone oxidase NDN12_00735 PF00106 short chain dehydrogenase NDN12_00755 PF01047 MarR family NDN12_00760 PF00255 Glutathione peroxidase NDN12_00765 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDN12_00765 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDN12_00770 PF03033 Glycosyltransferase family 28 N-terminal domain NDN12_00770 PF04101 Glycosyltransferase family 28 C-terminal domain NDN12_00775 PF08245 Mur ligase middle domain NDN12_00775 PF02875 Mur ligase family, glutamate ligase domain NDN12_00775 PF01225 Mur ligase family, catalytic domain NDN12_00780 PF07478 D-ala D-ala ligase C-terminus NDN12_00780 PF01820 D-ala D-ala ligase N-terminus NDN12_00785 PF08478 POTRA domain, FtsQ-type NDN12_00785 PF03799 Cell division protein FtsQ NDN12_00790 PF02491 SHS2 domain inserted in FTSA NDN12_00795 PF00091 Tubulin/FtsZ family, GTPase domain NDN12_00795 PF12327 FtsZ family, C-terminal domain NDN12_00800 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDN12_00815 PF17831 Pyruvate dehydrogenase E1 component middle domain NDN12_00815 PF00456 Transketolase, thiamine diphosphate binding domain NDN12_00820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN12_00820 PF02817 e3 binding domain NDN12_00820 PF00364 Biotin-requiring enzyme NDN12_00830 PF01169 Uncharacterized protein family UPF0016 NDN12_00835 PF00258 Flavodoxin NDN12_00835 PF01613 Flavin reductase like domain NDN12_00840 PF00478 IMP dehydrogenase / GMP reductase domain NDN12_00840 PF00571 CBS domain NDN12_00845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_00845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_00845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_00845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_00850 PF01243 Pyridoxamine 5'-phosphate oxidase NDN12_00850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDN12_00855 PF02272 DHHA1 domain NDN12_00855 PF01368 DHH family NDN12_00855 PF17768 RecJ OB domain NDN12_00880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_00885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDN12_00890 PF04452 RNA methyltransferase NDN12_00895 PF00924 Mechanosensitive ion channel NDN12_00905 PF16177 Acetyl-coenzyme A synthetase N-terminus NDN12_00905 PF13193 AMP-binding enzyme C-terminal domain NDN12_00905 PF00501 AMP-binding enzyme NDN12_00910 PF00857 Isochorismatase family NDN12_00915 PF01037 Lrp/AsnC ligand binding domain NDN12_00920 PF00296 Luciferase-like monooxygenase NDN12_00925 PF03358 NADPH-dependent FMN reductase NDN12_00930 PF00072 Response regulator receiver domain NDN12_00930 PF00196 Bacterial regulatory proteins, luxR family NDN12_00940 PF00905 Penicillin binding protein transpeptidase domain NDN12_00945 PF00990 Diguanylate cyclase, GGDEF domain NDN12_00950 PF17755 UvrA DNA-binding domain NDN12_00950 PF17760 UvrA interaction domain NDN12_00955 PF00440 Bacterial regulatory proteins, tetR family NDN12_00955 PF16925 Tetracyclin repressor-like, C-terminal domain NDN12_00960 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_00960 PF09277 Erythronolide synthase, docking NDN12_00960 PF16197 Ketoacyl-synthetase C-terminal extension NDN12_00960 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN12_00960 PF08659 KR domain NDN12_00960 PF00550 Phosphopantetheine attachment site NDN12_00960 PF14765 Polyketide synthase dehydratase NDN12_00960 PF00698 Acyl transferase domain NDN12_00960 PF08990 Erythronolide synthase docking NDN12_00960 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN12_00975 PF03070 TENA/THI-4/PQQC family NDN12_00985 PF07690 Major Facilitator Superfamily NDN12_00990 PF00436 Single-strand binding protein family NDN12_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_01010 PF00857 Isochorismatase family NDN12_01015 PF05726 Pirin C-terminal cupin domain NDN12_01015 PF02678 Pirin NDN12_01020 PF01593 Flavin containing amine oxidoreductase NDN12_01050 PF02705 K+ potassium transporter NDN12_01065 PF00230 Major intrinsic protein NDN12_01080 PF00977 Histidine biosynthesis protein NDN12_01085 PF01636 Phosphotransferase enzyme family NDN12_01100 PF00296 Luciferase-like monooxygenase NDN12_01105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_01105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_01110 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_01110 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_01110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_01125 PF00916 Sulfate permease family NDN12_01125 PF01740 STAS domain NDN12_01130 PF00977 Histidine biosynthesis protein NDN12_01150 PF00117 Glutamine amidotransferase class-I NDN12_01155 PF00475 Imidazoleglycerol-phosphate dehydratase NDN12_01185 PF08241 Methyltransferase domain NDN12_01190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDN12_01190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDN12_01195 PF00512 His Kinase A (phospho-acceptor) domain NDN12_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_01195 PF00672 HAMP domain NDN12_01200 PF00072 Response regulator receiver domain NDN12_01200 PF00486 Transcriptional regulatory protein, C terminal NDN12_01205 PF00575 S1 RNA binding domain NDN12_01205 PF09371 Tex-like protein N-terminal domain NDN12_01205 PF16921 Tex protein YqgF-like domain NDN12_01205 PF17674 HHH domain NDN12_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_01240 PF03466 LysR substrate binding domain NDN12_01245 PF03600 Citrate transporter NDN12_01255 PF00083 Sugar (and other) transporter NDN12_01260 PF13411 MerR HTH family regulatory protein NDN12_01265 PF00550 Phosphopantetheine attachment site NDN12_01265 PF07993 Male sterility protein NDN12_01270 PF00106 short chain dehydrogenase NDN12_01275 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_01280 PF12848 ABC transporter NDN12_01280 PF00005 ABC transporter NDN12_01300 PF00529 HlyD membrane-fusion protein of T1SS NDN12_01300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_01305 PF00873 AcrB/AcrD/AcrF family NDN12_01310 PF01545 Cation efflux family NDN12_01340 PF00324 Amino acid permease NDN12_01355 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_01370 PF01795 MraW methylase family NDN12_01375 PF04999 Cell division protein FtsL NDN12_01385 PF02875 Mur ligase family, glutamate ligase domain NDN12_01385 PF01225 Mur ligase family, catalytic domain NDN12_01385 PF08245 Mur ligase middle domain NDN12_01390 PF08245 Mur ligase middle domain NDN12_01390 PF02875 Mur ligase family, glutamate ligase domain NDN12_01390 PF01225 Mur ligase family, catalytic domain NDN12_01395 PF00953 Glycosyl transferase family 4 NDN12_01400 PF13847 Methyltransferase domain NDN12_01405 PF17092 Penicillin-binding protein OB-like domain NDN12_01405 PF00912 Transglycosylase NDN12_01405 PF00905 Penicillin binding protein transpeptidase domain NDN12_01410 PF11104 Type IV pilus assembly protein PilM; NDN12_01415 PF05137 Fimbrial assembly protein (PilN) NDN12_01420 PF04350 Pilus assembly protein, PilO NDN12_01430 PF00263 Bacterial type II and III secretion system protein NDN12_01430 PF03958 Bacterial type II/III secretion system short domain NDN12_01430 PF07660 Secretin and TonB N terminus short domain NDN12_01430 PF11741 AMIN domain NDN12_01435 PF01202 Shikimate kinase NDN12_01440 PF01761 3-dehydroquinate synthase NDN12_01450 PF00310 Glutamine amidotransferases class-II NDN12_01450 PF04898 Glutamate synthase central domain NDN12_01450 PF01645 Conserved region in glutamate synthase NDN12_01450 PF01493 GXGXG motif NDN12_01455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN12_01455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_01460 PF07690 Major Facilitator Superfamily NDN12_01470 PF04011 LemA family NDN12_01475 PF04536 TPM domain NDN12_01485 PF00114 Pilin (bacterial filament) NDN12_01485 PF07963 Prokaryotic N-terminal methylation motif NDN12_01495 PF00114 Pilin (bacterial filament) NDN12_01495 PF07963 Prokaryotic N-terminal methylation motif NDN12_01505 PF01040 UbiA prenyltransferase family NDN12_01510 PF15864 Protein glycosylation ligase NDN12_01510 PF04932 O-Antigen ligase NDN12_01510 PF11846 Virulence factor membrane-bound polymerase, C-terminal NDN12_01515 PF00210 Ferritin-like domain NDN12_01520 PF04324 BFD-like [2Fe-2S] binding domain NDN12_01525 PF01042 Endoribonuclease L-PSP NDN12_01530 PF13291 ACT domain NDN12_01530 PF04607 Region found in RelA / SpoT proteins NDN12_01530 PF02824 TGS domain NDN12_01535 PF01192 RNA polymerase Rpb6 NDN12_01540 PF00625 Guanylate kinase NDN12_01545 PF02401 LytB protein NDN12_01550 PF00114 Pilin (bacterial filament) NDN12_01550 PF07963 Prokaryotic N-terminal methylation motif NDN12_01575 PF00114 Pilin (bacterial filament) NDN12_01575 PF07963 Prokaryotic N-terminal methylation motif NDN12_01610 PF07963 Prokaryotic N-terminal methylation motif NDN12_01610 PF00114 Pilin (bacterial filament) NDN12_01615 PF00886 Ribosomal protein S16 NDN12_01620 PF05239 PRC-barrel domain NDN12_01620 PF01782 RimM N-terminal domain NDN12_01625 PF01746 tRNA (Guanine-1)-methyltransferase NDN12_01630 PF01245 Ribosomal protein L19 NDN12_01635 PF09157 Pseudouridine synthase II TruB, C-terminal NDN12_01635 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDN12_01635 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDN12_01640 PF01925 Sulfite exporter TauE/SafE NDN12_01645 PF00892 EamA-like transporter family NDN12_01655 PF00892 EamA-like transporter family NDN12_01660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_01660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_01665 PF01565 FAD binding domain NDN12_01665 PF02913 FAD linked oxidases, C-terminal domain NDN12_01685 PF03992 Antibiotic biosynthesis monooxygenase NDN12_01690 PF02525 Flavodoxin-like fold NDN12_01705 PF07690 Major Facilitator Superfamily NDN12_01710 PF12805 FUSC-like inner membrane protein yccS NDN12_01715 PF00080 Copper/zinc superoxide dismutase (SODC) NDN12_01720 PF01594 AI-2E family transporter NDN12_01725 PF13614 AAA domain NDN12_01735 PF01209 ubiE/COQ5 methyltransferase family NDN12_01770 PF00082 Subtilase family NDN12_01785 PF05746 DALR anticodon binding domain NDN12_01785 PF02092 Glycyl-tRNA synthetase beta subunit NDN12_01790 PF02091 Glycyl-tRNA synthetase alpha subunit NDN12_01815 PF01743 Poly A polymerase head domain NDN12_01815 PF00571 CBS domain NDN12_01820 PF04024 PspC domain NDN12_01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_01830 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_01830 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_01830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_01840 PF01488 Shikimate / quinate 5-dehydrogenase NDN12_01840 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDN12_01840 PF08501 Shikimate dehydrogenase substrate binding domain NDN12_01845 PF00392 Bacterial regulatory proteins, gntR family NDN12_01845 PF00155 Aminotransferase class I and II NDN12_01855 PF01218 Coproporphyrinogen III oxidase NDN12_01865 PF00925 GTP cyclohydrolase II NDN12_01870 PF02779 Transketolase, pyrimidine binding domain NDN12_01870 PF02780 Transketolase, C-terminal domain NDN12_01870 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDN12_01875 PF00459 Inositol monophosphatase family NDN12_01885 PF00271 Helicase conserved C-terminal domain NDN12_01885 PF00270 DEAD/DEAH box helicase NDN12_01890 PF00005 ABC transporter NDN12_01895 PF02405 Permease MlaE NDN12_01900 PF02470 MlaD protein NDN12_01905 PF05494 MlaC protein NDN12_01915 PF01544 CorA-like Mg2+ transporter protein NDN12_01920 PF03641 Possible lysine decarboxylase NDN12_01925 PF00293 NUDIX domain NDN12_01930 PF00156 Phosphoribosyl transferase domain NDN12_01935 PF00271 Helicase conserved C-terminal domain NDN12_01935 PF00270 DEAD/DEAH box helicase NDN12_01935 PF17191 RecG wedge domain NDN12_01950 PF01553 Acyltransferase NDN12_01960 PF00375 Sodium:dicarboxylate symporter family NDN12_01970 PF01926 50S ribosome-binding GTPase NDN12_01975 PF02082 Transcriptional regulator NDN12_01980 PF00042 Globin NDN12_01980 PF00970 Oxidoreductase FAD-binding domain NDN12_01980 PF00175 Oxidoreductase NAD-binding domain NDN12_01985 PF05872 Bacterial protein of unknown function (DUF853) NDN12_01990 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_01995 PF00117 Glutamine amidotransferase class-I NDN12_02000 PF00338 Ribosomal protein S10p/S20e NDN12_02005 PF00297 Ribosomal protein L3 NDN12_02010 PF00573 Ribosomal protein L4/L1 family NDN12_02015 PF00276 Ribosomal protein L23 NDN12_02020 PF00181 Ribosomal Proteins L2, RNA binding domain NDN12_02020 PF03947 Ribosomal Proteins L2, C-terminal domain NDN12_02025 PF00203 Ribosomal protein S19 NDN12_02030 PF00237 Ribosomal protein L22p/L17e NDN12_02040 PF00252 Ribosomal protein L16p/L10e NDN12_02045 PF00831 Ribosomal L29 protein NDN12_02050 PF00366 Ribosomal protein S17 NDN12_02055 PF00238 Ribosomal protein L14p/L23e NDN12_02060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDN12_02060 PF00467 KOW motif NDN12_02065 PF00673 ribosomal L5P family C-terminus NDN12_02065 PF00281 Ribosomal protein L5 NDN12_02070 PF00253 Ribosomal protein S14p/S29e NDN12_02075 PF00410 Ribosomal protein S8 NDN12_02080 PF00347 Ribosomal protein L6 NDN12_02085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDN12_02090 PF00333 Ribosomal protein S5, N-terminal domain NDN12_02090 PF03719 Ribosomal protein S5, C-terminal domain NDN12_02095 PF00327 Ribosomal protein L30p/L7e NDN12_02100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDN12_02105 PF00344 SecY translocase NDN12_02110 PF00444 Ribosomal protein L36 NDN12_02115 PF00416 Ribosomal protein S13/S18 NDN12_02120 PF00411 Ribosomal protein S11 NDN12_02125 PF00163 Ribosomal protein S4/S9 N-terminal domain NDN12_02125 PF01479 S4 domain NDN12_02130 PF01000 RNA polymerase Rpb3/RpoA insert domain NDN12_02130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDN12_02130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDN12_02135 PF01196 Ribosomal protein L17 NDN12_02145 PF00743 Flavin-binding monooxygenase-like NDN12_02155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_02155 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_02155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_02160 PF03937 Flavinator of succinate dehydrogenase NDN12_02195 PF00892 EamA-like transporter family NDN12_02200 PF12833 Helix-turn-helix domain NDN12_02220 PF01432 Peptidase family M3 NDN12_02230 PF08461 Ribonuclease R winged-helix domain NDN12_02230 PF17876 Cold shock domain NDN12_02230 PF08206 Ribonuclease B OB domain NDN12_02230 PF00773 RNB domain NDN12_02230 PF00575 S1 RNA binding domain NDN12_02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN12_02290 PF03631 Virulence factor BrkB NDN12_02295 PF03358 NADPH-dependent FMN reductase NDN12_02305 PF01790 Prolipoprotein diacylglyceryl transferase NDN12_02315 PF00245 Alkaline phosphatase NDN12_02335 PF00902 Sec-independent protein translocase protein (TatC) NDN12_02340 PF02416 mttA/Hcf106 family NDN12_02345 PF02416 mttA/Hcf106 family NDN12_02355 PF01725 Ham1 family NDN12_02370 PF00561 alpha/beta hydrolase fold NDN12_02370 PF07021 Methionine biosynthesis protein MetW NDN12_02375 PF00561 alpha/beta hydrolase fold NDN12_02380 PF00682 HMGL-like NDN12_02380 PF08502 LeuA allosteric (dimerisation) domain NDN12_02385 PF13640 2OG-Fe(II) oxygenase superfamily NDN12_02385 PF18331 PKHD-type hydroxylase C-terminal domain NDN12_02390 PF00593 TonB dependent receptor NDN12_02390 PF07715 TonB-dependent Receptor Plug Domain NDN12_02395 PF01070 FMN-dependent dehydrogenase NDN12_02400 PF13640 2OG-Fe(II) oxygenase superfamily NDN12_02400 PF18331 PKHD-type hydroxylase C-terminal domain NDN12_02405 PF00593 TonB dependent receptor NDN12_02405 PF07715 TonB-dependent Receptor Plug Domain NDN12_02410 PF00593 TonB dependent receptor NDN12_02410 PF07715 TonB-dependent Receptor Plug Domain NDN12_02415 PF05698 Bacterial trigger factor protein (TF) C-terminus NDN12_02415 PF05697 Bacterial trigger factor protein (TF) NDN12_02415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_02420 PF00574 Clp protease NDN12_02425 PF06689 ClpX C4-type zinc finger NDN12_02425 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_02425 PF07724 AAA domain (Cdc48 subfamily) NDN12_02440 PF05683 Fumarase C-terminus NDN12_02440 PF05681 Fumarate hydratase (Fumerase) NDN12_02445 PF02311 AraC-like ligand binding domain NDN12_02445 PF12833 Helix-turn-helix domain NDN12_02455 PF07085 DRTGG domain NDN12_02455 PF01515 Phosphate acetyl/butaryl transferase NDN12_02460 PF00871 Acetokinase family NDN12_02465 PF00171 Aldehyde dehydrogenase family NDN12_02470 PF12697 Alpha/beta hydrolase family NDN12_02480 PF00933 Glycosyl hydrolase family 3 N terminal domain NDN12_02485 PF11818 C-terminal domain of tail specific protease (DUF3340) NDN12_02485 PF00595 PDZ domain NDN12_02485 PF03572 Peptidase family S41 NDN12_02485 PF17804 Tail specific protease N-terminal domain NDN12_02510 PF16360 GTP-binding GTPase Middle Region NDN12_02510 PF01926 50S ribosome-binding GTPase NDN12_02510 PF13167 GTP-binding GTPase N-terminal NDN12_02525 PF13091 PLD-like domain NDN12_02530 PF00149 Calcineurin-like phosphoesterase NDN12_02535 PF00691 OmpA family NDN12_02535 PF01389 OmpA-like transmembrane domain NDN12_02540 PF17152 Periplasmic sensor domain NDN12_02540 PF00990 Diguanylate cyclase, GGDEF domain NDN12_02580 PF04273 Putative phosphatase (DUF442) NDN12_02580 PF00753 Metallo-beta-lactamase superfamily NDN12_02585 PF00561 alpha/beta hydrolase fold NDN12_02590 PF00085 Thioredoxin NDN12_02595 PF03061 Thioesterase superfamily NDN12_02600 PF13185 GAF domain NDN12_02610 PF04461 Protein of unknown function (DUF520) NDN12_02620 PF01266 FAD dependent oxidoreductase NDN12_02620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NDN12_02635 PF04279 Intracellular septation protein A NDN12_02640 PF02811 PHP domain NDN12_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_02645 PF03466 LysR substrate binding domain NDN12_02650 PF00248 Aldo/keto reductase family NDN12_02655 PF01062 Bestrophin, RFP-TM, chloride channel NDN12_02660 PF04002 RadC-like JAB domain NDN12_02665 PF02441 Flavoprotein NDN12_02665 PF04127 DNA / pantothenate metabolism flavoprotein NDN12_02675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_02675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN12_02680 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA NDN12_02700 PF02556 Preprotein translocase subunit SecB NDN12_02705 PF00462 Glutaredoxin NDN12_02715 PF03193 RsgA GTPase NDN12_02720 PF00929 Exonuclease NDN12_02745 PF02321 Outer membrane efflux protein NDN12_02750 PF02687 FtsX-like permease family NDN12_02750 PF00005 ABC transporter NDN12_02750 PF12704 MacB-like periplasmic core domain NDN12_02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_02760 PF02146 Sir2 family NDN12_02775 PF13603 Leucyl-tRNA synthetase, Domain 2 NDN12_02775 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_02775 PF08264 Anticodon-binding domain of tRNA NDN12_02775 PF09334 tRNA synthetases class I (M) NDN12_02785 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_02785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_02790 PF10369 Small subunit of acetolactate synthase NDN12_02795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NDN12_02795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NDN12_02800 PF00563 EAL domain NDN12_02800 PF03707 Bacterial signalling protein N terminal repeat NDN12_02800 PF00990 Diguanylate cyclase, GGDEF domain NDN12_02815 PF01381 Helix-turn-helix NDN12_02835 PF03960 ArsC family NDN12_02840 PF01022 Bacterial regulatory protein, arsR family NDN12_02845 PF01758 Sodium Bile acid symporter family NDN12_02855 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_02855 PF13018 Extended Signal Peptide of Type V secretion system NDN12_02855 PF03895 YadA-like membrane anchor domain NDN12_02855 PF05658 Head domain of trimeric autotransporter adhesin NDN12_02860 PF00691 OmpA family NDN12_02860 PF04355 SmpA / OmlA family NDN12_02865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_02865 PF12833 Helix-turn-helix domain NDN12_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_02870 PF03466 LysR substrate binding domain NDN12_02880 PF02219 Methylenetetrahydrofolate reductase NDN12_02885 PF01613 Flavin reductase like domain NDN12_02890 PF08267 Cobalamin-independent synthase, N-terminal domain NDN12_02890 PF01717 Cobalamin-independent synthase, Catalytic domain NDN12_02900 PF16658 Class II release factor RF3, C-terminal domain NDN12_02900 PF00009 Elongation factor Tu GTP binding domain NDN12_02900 PF03144 Elongation factor Tu domain 2 NDN12_02910 PF11738 Protein of unknown function (DUF3298) NDN12_02910 PF13739 Deacetylase PdaC NDN12_02910 PF01522 Polysaccharide deacetylase NDN12_02915 PF01026 TatD related DNase NDN12_02920 PF00330 Aconitase family (aconitate hydratase) NDN12_02920 PF00694 Aconitase C-terminal domain NDN12_02930 PF00899 ThiF family NDN12_02950 PF01207 Dihydrouridine synthase (Dus) NDN12_02955 PF00072 Response regulator receiver domain NDN12_02955 PF00196 Bacterial regulatory proteins, luxR family NDN12_02960 PF00072 Response regulator receiver domain NDN12_02960 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_02960 PF01627 Hpt domain NDN12_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_02960 PF00989 PAS fold NDN12_02960 PF00512 His Kinase A (phospho-acceptor) domain NDN12_02970 PF07690 Major Facilitator Superfamily NDN12_02980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NDN12_02980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NDN12_02985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NDN12_02990 PF02233 NAD(P) transhydrogenase beta subunit NDN12_03000 PF00106 short chain dehydrogenase NDN12_03005 PF00293 NUDIX domain NDN12_03015 PF01261 Xylose isomerase-like TIM barrel NDN12_03020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_03020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_03025 PF00378 Enoyl-CoA hydratase/isomerase NDN12_03030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDN12_03030 PF01627 Hpt domain NDN12_03030 PF00512 His Kinase A (phospho-acceptor) domain NDN12_03030 PF00072 Response regulator receiver domain NDN12_03030 PF00672 HAMP domain NDN12_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_03035 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_03045 PF05958 tRNA (Uracil-5-)-methyltransferase NDN12_03050 PF13291 ACT domain NDN12_03050 PF04607 Region found in RelA / SpoT proteins NDN12_03050 PF02824 TGS domain NDN12_03060 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN12_03070 PF12626 Polymerase A arginine-rich C-terminus NDN12_03070 PF01743 Poly A polymerase head domain NDN12_03070 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN12_03075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDN12_03080 PF02548 Ketopantoate hydroxymethyltransferase NDN12_03085 PF02569 Pantoate-beta-alanine ligase NDN12_03090 PF03668 P-loop ATPase protein family NDN12_03095 PF00381 PTS HPr component phosphorylation site NDN12_03100 PF04751 Protein of unknown function (DUF615) NDN12_03110 PF00501 AMP-binding enzyme NDN12_03110 PF13193 AMP-binding enzyme C-terminal domain NDN12_03115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_03115 PF03129 Anticodon binding domain NDN12_03115 PF02824 TGS domain NDN12_03115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN12_03120 PF05198 Translation initiation factor IF-3, N-terminal domain NDN12_03120 PF00707 Translation initiation factor IF-3, C-terminal domain NDN12_03130 PF02798 Glutathione S-transferase, N-terminal domain NDN12_03130 PF00043 Glutathione S-transferase, C-terminal domain NDN12_03145 PF09335 SNARE associated Golgi protein NDN12_03150 PF07690 Major Facilitator Superfamily NDN12_03155 PF01632 Ribosomal protein L35 NDN12_03160 PF00453 Ribosomal protein L20 NDN12_03185 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDN12_03185 PF01409 tRNA synthetases class II core domain (F) NDN12_03190 PF01588 Putative tRNA binding domain NDN12_03190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDN12_03190 PF03483 B3/4 domain NDN12_03190 PF03484 tRNA synthetase B5 domain NDN12_03190 PF03147 Ferredoxin-fold anticodon binding domain NDN12_03195 PF00216 Bacterial DNA-binding protein NDN12_03205 PF07497 Rho termination factor, RNA-binding domain NDN12_03205 PF07498 Rho termination factor, N-terminal domain NDN12_03205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_03210 PF00085 Thioredoxin NDN12_03215 PF02541 Ppx/GppA phosphatase family NDN12_03220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDN12_03225 PF09179 TilS substrate binding domain NDN12_03225 PF11734 TilS substrate C-terminal domain NDN12_03225 PF01171 PP-loop family NDN12_03230 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN12_03230 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN12_03235 PF02325 YGGT family NDN12_03240 PF01757 Acyltransferase family NDN12_03245 PF00476 DNA polymerase family A NDN12_03245 PF01612 3'-5' exonuclease NDN12_03245 PF01367 5'-3' exonuclease, C-terminal SAM fold NDN12_03245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDN12_03265 PF00437 Type II/IV secretion system protein NDN12_03270 PF02566 OsmC-like protein NDN12_03275 PF01047 MarR family NDN12_03285 PF00795 Carbon-nitrogen hydrolase NDN12_03330 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDN12_03330 PF04963 Sigma-54 factor, core binding domain NDN12_03330 PF04552 Sigma-54, DNA binding domain NDN12_03335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDN12_03340 PF01722 BolA-like protein NDN12_03345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN12_03350 PF01634 ATP phosphoribosyltransferase NDN12_03355 PF04542 Sigma-70 region 2 NDN12_03355 PF08281 Sigma-70, region 4 NDN12_03355 PF12680 SnoaL-like domain NDN12_03365 PF00815 Histidinol dehydrogenase NDN12_03370 PF00155 Aminotransferase class I and II NDN12_03375 PF04715 Anthranilate synthase component I, N terminal region NDN12_03375 PF00425 chorismate binding enzyme NDN12_03415 PF00293 NUDIX domain NDN12_03425 PF00814 Glycoprotease family NDN12_03430 PF02673 Bacitracin resistance protein BacA NDN12_03435 PF04445 Putative SAM-dependent methyltransferase NDN12_03445 PF00756 Putative esterase NDN12_03460 PF00834 Ribulose-phosphate 3 epimerase family NDN12_03470 PF07732 Multicopper oxidase NDN12_03470 PF07731 Multicopper oxidase NDN12_03470 PF00394 Multicopper oxidase NDN12_03475 PF05275 Copper resistance protein B precursor (CopB) NDN12_03490 PF00893 Small Multidrug Resistance protein NDN12_03495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN12_03495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_03500 PF01960 ArgJ family NDN12_03505 PF02445 Quinolinate synthetase A protein NDN12_03535 PF05199 GMC oxidoreductase NDN12_03535 PF00732 GMC oxidoreductase NDN12_03545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN12_03550 PF00156 Phosphoribosyl transferase domain NDN12_03550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN12_03555 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_03555 PF00107 Zinc-binding dehydrogenase NDN12_03565 PF05199 GMC oxidoreductase NDN12_03565 PF00732 GMC oxidoreductase NDN12_03570 PF00171 Aldehyde dehydrogenase family NDN12_03575 PF13977 BetI-type transcriptional repressor, C-terminal NDN12_03575 PF00440 Bacterial regulatory proteins, tetR family NDN12_03580 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_03585 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_03600 PF06039 Malate:quinone oxidoreductase (Mqo) NDN12_03665 PF00268 Ribonucleotide reductase, small chain NDN12_03675 PF03477 ATP cone domain NDN12_03675 PF02867 Ribonucleotide reductase, barrel domain NDN12_03675 PF00317 Ribonucleotide reductase, all-alpha domain NDN12_03680 PF00072 Response regulator receiver domain NDN12_03680 PF00486 Transcriptional regulatory protein, C terminal NDN12_03685 PF00512 His Kinase A (phospho-acceptor) domain NDN12_03685 PF00672 HAMP domain NDN12_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_03695 PF00990 Diguanylate cyclase, GGDEF domain NDN12_03700 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDN12_03705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDN12_03710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDN12_03710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDN12_03720 PF10531 SLBB domain NDN12_03720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDN12_03720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDN12_03725 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDN12_03725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_03725 PF00384 Molybdopterin oxidoreductase NDN12_03730 PF00146 NADH dehydrogenase NDN12_03735 PF12838 4Fe-4S dicluster domain NDN12_03740 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDN12_03745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN12_03750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN12_03750 PF00361 Proton-conducting membrane transporter NDN12_03755 PF00361 Proton-conducting membrane transporter NDN12_03760 PF00361 Proton-conducting membrane transporter NDN12_03775 PF07715 TonB-dependent Receptor Plug Domain NDN12_03775 PF00593 TonB dependent receptor NDN12_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_03780 PF03466 LysR substrate binding domain NDN12_03785 PF00970 Oxidoreductase FAD-binding domain NDN12_03785 PF00175 Oxidoreductase NAD-binding domain NDN12_03800 PF05552 Conserved TM helix NDN12_03820 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_03825 PF13533 Biotin-lipoyl like NDN12_03845 PF08241 Methyltransferase domain NDN12_03850 PF06100 MCRA family NDN12_03860 PF00753 Metallo-beta-lactamase superfamily NDN12_03860 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN12_03870 PF01588 Putative tRNA binding domain NDN12_03870 PF09334 tRNA synthetases class I (M) NDN12_03885 PF13302 Acetyltransferase (GNAT) domain NDN12_03895 PF10609 NUBPL iron-transfer P-loop NTPase NDN12_03900 PF01048 Phosphorylase superfamily NDN12_03915 PF00692 dUTPase NDN12_03965 PF01207 Dihydrouridine synthase (Dus) NDN12_03980 PF00448 SRP54-type protein, GTPase domain NDN12_03980 PF02881 SRP54-type protein, helical bundle domain NDN12_03980 PF02978 Signal peptide binding domain NDN12_03990 PF03309 Type III pantothenate kinase NDN12_04000 PF01925 Sulfite exporter TauE/SafE NDN12_04020 PF06470 SMC proteins Flexible Hinge Domain NDN12_04020 PF02463 RecF/RecN/SMC N terminal domain NDN12_04030 PF00533 BRCA1 C Terminus (BRCT) domain NDN12_04030 PF01653 NAD-dependent DNA ligase adenylation domain NDN12_04030 PF03120 NAD-dependent DNA ligase OB-fold domain NDN12_04030 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDN12_04030 PF12826 Helix-hairpin-helix motif NDN12_04040 PF00210 Ferritin-like domain NDN12_04050 PF07690 Major Facilitator Superfamily NDN12_04055 PF03594 Benzoate membrane transport protein NDN12_04060 PF00106 short chain dehydrogenase NDN12_04065 PF00970 Oxidoreductase FAD-binding domain NDN12_04065 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_04065 PF00175 Oxidoreductase NAD-binding domain NDN12_04070 PF00866 Ring hydroxylating beta subunit NDN12_04075 PF00355 Rieske [2Fe-2S] domain NDN12_04075 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_04080 PF03466 LysR substrate binding domain NDN12_04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_04085 PF00578 AhpC/TSA family NDN12_04095 PF12697 Alpha/beta hydrolase family NDN12_04095 PF08241 Methyltransferase domain NDN12_04100 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_04100 PF04055 Radical SAM superfamily NDN12_04100 PF00202 Aminotransferase class-III NDN12_04105 PF00155 Aminotransferase class I and II NDN12_04125 PF02472 Biopolymer transport protein ExbD/TolR NDN12_04130 PF02472 Biopolymer transport protein ExbD/TolR NDN12_04135 PF01618 MotA/TolQ/ExbB proton channel family NDN12_04145 PF07715 TonB-dependent Receptor Plug Domain NDN12_04145 PF00593 TonB dependent receptor NDN12_04150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_04160 PF01432 Peptidase family M3 NDN12_04165 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_04170 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_04170 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_04175 PF00005 ABC transporter NDN12_04175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_04180 PF01479 S4 domain NDN12_04180 PF00849 RNA pseudouridylate synthase NDN12_04185 PF04079 Segregation and condensation complex subunit ScpB NDN12_04190 PF02616 Segregation and condensation protein ScpA NDN12_04205 PF01300 Telomere recombination NDN12_04210 PF04315 Elongation factor P hydroxylase NDN12_04215 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDN12_04220 PF01783 Ribosomal L32p protein family NDN12_04225 PF00698 Acyl transferase domain NDN12_04235 PF00550 Phosphopantetheine attachment site NDN12_04240 PF04972 BON domain NDN12_04240 PF01476 LysM domain NDN12_04245 PF08543 Phosphomethylpyrimidine kinase NDN12_04245 PF02581 Thiamine monophosphate synthase NDN12_04245 PF03070 TENA/THI-4/PQQC family NDN12_04250 PF13419 Haloacid dehalogenase-like hydrolase NDN12_04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN12_04270 PF00027 Cyclic nucleotide-binding domain NDN12_04270 PF01734 Patatin-like phospholipase NDN12_04275 PF02261 Aspartate decarboxylase NDN12_04280 PF01195 Peptidyl-tRNA hydrolase NDN12_04285 PF01386 Ribosomal L25p family NDN12_04290 PF14572 Phosphoribosyl synthetase-associated domain NDN12_04290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN12_04315 PF08544 GHMP kinases C terminal NDN12_04315 PF00288 GHMP kinases N terminal domain NDN12_04320 PF03550 Outer membrane lipoprotein LolB NDN12_04330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDN12_04330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDN12_04330 PF01488 Shikimate / quinate 5-dehydrogenase NDN12_04335 PF01807 CHC2 zinc finger NDN12_04335 PF10410 DnaB-helicase binding domain of primase NDN12_04335 PF08278 DNA primase DnaG DnaB-binding NDN12_04335 PF08275 DNA primase catalytic core, N-terminal domain NDN12_04340 PF13525 Outer membrane lipoprotein NDN12_04345 PF00849 RNA pseudouridylate synthase NDN12_04345 PF01479 S4 domain NDN12_04350 PF02578 Multi-copper polyphenol oxidoreductase laccase NDN12_04355 PF03358 NADPH-dependent FMN reductase NDN12_04360 PF01668 SmpB protein NDN12_04365 PF01467 Cytidylyltransferase-like NDN12_04370 PF00037 4Fe-4S binding domain NDN12_04395 PF00795 Carbon-nitrogen hydrolase NDN12_04395 PF02540 NAD synthase NDN12_04420 PF03653 Uncharacterised protein family (UPF0093) NDN12_04425 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN12_04425 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN12_04435 PF00164 Ribosomal protein S12/S23 NDN12_04440 PF00177 Ribosomal protein S7p/S5e NDN12_04445 PF03144 Elongation factor Tu domain 2 NDN12_04445 PF14492 Elongation Factor G, domain II NDN12_04445 PF03764 Elongation factor G, domain IV NDN12_04445 PF00679 Elongation factor G C-terminus NDN12_04445 PF00009 Elongation factor Tu GTP binding domain NDN12_04450 PF00009 Elongation factor Tu GTP binding domain NDN12_04450 PF03144 Elongation factor Tu domain 2 NDN12_04450 PF03143 Elongation factor Tu C-terminal domain NDN12_04465 PF00583 Acetyltransferase (GNAT) family NDN12_04470 PF04376 Arginine-tRNA-protein transferase, N terminus NDN12_04470 PF04377 Arginine-tRNA-protein transferase, C terminus NDN12_04475 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDN12_04480 PF13847 Methyltransferase domain NDN12_04480 PF10119 Predicted methyltransferase regulatory domain NDN12_04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_04490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDN12_04490 PF17854 FtsK alpha domain NDN12_04490 PF09397 Ftsk gamma domain NDN12_04490 PF01580 FtsK/SpoIIIE family NDN12_04505 PF03776 Septum formation topological specificity factor MinE NDN12_04510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NDN12_04515 PF03775 Septum formation inhibitor MinC, C-terminal domain NDN12_04525 PF01553 Acyltransferase NDN12_04530 PF00691 OmpA family NDN12_04530 PF13488 Glycine zipper NDN12_04535 PF13361 UvrD-like helicase C-terminal domain NDN12_04535 PF00580 UvrD/REP helicase N-terminal domain NDN12_04540 PF00692 dUTPase NDN12_04545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_04545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_04545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_04545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_04550 PF00696 Amino acid kinase family NDN12_04560 PF13230 Glutamine amidotransferases class-II NDN12_04565 PF01814 Hemerythrin HHE cation binding domain NDN12_04575 PF03658 RnfH family Ubiquitin NDN12_04580 PF04355 SmpA / OmlA family NDN12_04585 PF01475 Ferric uptake regulator family NDN12_04590 PF00437 Type II/IV secretion system protein NDN12_04595 PF00437 Type II/IV secretion system protein NDN12_04600 PF01168 Alanine racemase, N-terminal domain NDN12_04610 PF13419 Haloacid dehalogenase-like hydrolase NDN12_04625 PF12320 Type 5 capsule protein repressor C-terminal domain NDN12_04625 PF00149 Calcineurin-like phosphoesterase NDN12_04630 PF00378 Enoyl-CoA hydratase/isomerase NDN12_04650 PF01370 NAD dependent epimerase/dehydratase family NDN12_04650 PF08338 Domain of unknown function (DUF1731) NDN12_04655 PF01266 FAD dependent oxidoreductase NDN12_04660 PF00490 Delta-aminolevulinic acid dehydratase NDN12_04665 PF03061 Thioesterase superfamily NDN12_04670 PF08241 Methyltransferase domain NDN12_04675 PF00355 Rieske [2Fe-2S] domain NDN12_04675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_04680 PF00866 Ring hydroxylating beta subunit NDN12_04685 PF00175 Oxidoreductase NAD-binding domain NDN12_04685 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_04685 PF00970 Oxidoreductase FAD-binding domain NDN12_04690 PF07690 Major Facilitator Superfamily NDN12_04700 PF00529 HlyD membrane-fusion protein of T1SS NDN12_04700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_04705 PF07690 Major Facilitator Superfamily NDN12_04715 PF13356 Arm DNA-binding domain NDN12_04715 PF00589 Phage integrase family NDN12_04775 PF07728 AAA domain (dynein-related subfamily) NDN12_04775 PF12102 Domain of unknown function (DUF3578) NDN12_04775 PF12102 Domain of unknown function (DUF3578) NDN12_04775 PF07728 AAA domain (dynein-related subfamily) NDN12_04800 PF00196 Bacterial regulatory proteins, luxR family NDN12_04805 PF00171 Aldehyde dehydrogenase family NDN12_04810 PF01593 Flavin containing amine oxidoreductase NDN12_04815 PF05658 Head domain of trimeric autotransporter adhesin NDN12_04815 PF03895 YadA-like membrane anchor domain NDN12_04815 PF13018 Extended Signal Peptide of Type V secretion system NDN12_04815 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_04820 PF00691 OmpA family NDN12_04820 PF04355 SmpA / OmlA family NDN12_04830 PF00171 Aldehyde dehydrogenase family NDN12_04860 PF12146 Serine aminopeptidase, S33 NDN12_04865 PF00106 short chain dehydrogenase NDN12_04875 PF08359 YsiA-like protein, C-terminal region NDN12_04875 PF00440 Bacterial regulatory proteins, tetR family NDN12_04885 PF01266 FAD dependent oxidoreductase NDN12_04910 PF05721 Phytanoyl-CoA dioxygenase (PhyH) NDN12_04920 PF00561 alpha/beta hydrolase fold NDN12_04925 PF00743 Flavin-binding monooxygenase-like NDN12_04950 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_04950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_04955 PF13953 PapC C-terminal domain NDN12_04955 PF13954 PapC N-terminal domain NDN12_04955 PF00577 Outer membrane usher protein NDN12_04965 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_04965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_04970 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_04970 PF12833 Helix-turn-helix domain NDN12_04975 PF00756 Putative esterase NDN12_04975 PF01476 LysM domain NDN12_04995 PF01638 HxlR-like helix-turn-helix NDN12_05005 PF13417 Glutathione S-transferase, N-terminal domain NDN12_05020 PF00392 Bacterial regulatory proteins, gntR family NDN12_05020 PF00155 Aminotransferase class I and II NDN12_05025 PF00596 Class II Aldolase and Adducin N-terminal domain NDN12_05030 PF00701 Dihydrodipicolinate synthetase family NDN12_05035 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_05035 PF12833 Helix-turn-helix domain NDN12_05040 PF00106 short chain dehydrogenase NDN12_05045 PF06314 Acetoacetate decarboxylase (ADC) NDN12_05050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_05060 PF00440 Bacterial regulatory proteins, tetR family NDN12_05065 PF00106 short chain dehydrogenase NDN12_05070 PF00743 Flavin-binding monooxygenase-like NDN12_05075 PF07859 alpha/beta hydrolase fold NDN12_05080 PF02321 Outer membrane efflux protein NDN12_05085 PF00873 AcrB/AcrD/AcrF family NDN12_05090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_05100 PF00376 MerR family regulatory protein NDN12_05100 PF09278 MerR, DNA binding NDN12_05105 PF07715 TonB-dependent Receptor Plug Domain NDN12_05105 PF07660 Secretin and TonB N terminus short domain NDN12_05105 PF00593 TonB dependent receptor NDN12_05115 PF00664 ABC transporter transmembrane region NDN12_05115 PF00005 ABC transporter NDN12_05115 PF08021 Siderophore-interacting FAD-binding domain NDN12_05115 PF04954 Siderophore-interacting protein NDN12_05120 PF00005 ABC transporter NDN12_05125 PF01032 FecCD transport family NDN12_05130 PF01032 FecCD transport family NDN12_05135 PF00005 ABC transporter NDN12_05140 PF01497 Periplasmic binding protein NDN12_05145 PF00593 TonB dependent receptor NDN12_05145 PF07715 TonB-dependent Receptor Plug Domain NDN12_05150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_05150 PF04717 Type VI secretion system, phage-baseplate injector NDN12_05150 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_05195 PF02321 Outer membrane efflux protein NDN12_05200 PF00873 AcrB/AcrD/AcrF family NDN12_05205 PF13533 Biotin-lipoyl like NDN12_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_05210 PF03466 LysR substrate binding domain NDN12_05215 PF07995 Glucose / Sorbosone dehydrogenase NDN12_05230 PF07690 Major Facilitator Superfamily NDN12_05235 PF12833 Helix-turn-helix domain NDN12_05240 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN12_05240 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN12_05245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_05245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_05255 PF01425 Amidase NDN12_05260 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_05270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_05270 PF00355 Rieske [2Fe-2S] domain NDN12_05285 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_05285 PF00175 Oxidoreductase NAD-binding domain NDN12_05290 PF01613 Flavin reductase like domain NDN12_05295 PF02311 AraC-like ligand binding domain NDN12_05295 PF12833 Helix-turn-helix domain NDN12_05300 PF01179 Copper amine oxidase, enzyme domain NDN12_05300 PF07833 Copper amine oxidase N-terminal domain NDN12_05300 PF02727 Copper amine oxidase, N2 domain NDN12_05300 PF02728 Copper amine oxidase, N3 domain NDN12_05310 PF05199 GMC oxidoreductase NDN12_05310 PF00732 GMC oxidoreductase NDN12_05315 PF00171 Aldehyde dehydrogenase family NDN12_05320 PF12146 Serine aminopeptidase, S33 NDN12_05325 PF02803 Thiolase, C-terminal domain NDN12_05325 PF00108 Thiolase, N-terminal domain NDN12_05330 PF01144 Coenzyme A transferase NDN12_05335 PF01144 Coenzyme A transferase NDN12_05340 PF00775 Dioxygenase NDN12_05340 PF04444 Catechol dioxygenase N terminus NDN12_05345 PF02426 Muconolactone delta-isomerase NDN12_05350 PF13378 Enolase C-terminal domain-like NDN12_05350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDN12_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_05355 PF03466 LysR substrate binding domain NDN12_05360 PF03573 outer membrane porin, OprD family NDN12_05370 PF07715 TonB-dependent Receptor Plug Domain NDN12_05370 PF00593 TonB dependent receptor NDN12_05390 PF07715 TonB-dependent Receptor Plug Domain NDN12_05390 PF07660 Secretin and TonB N terminus short domain NDN12_05390 PF00593 TonB dependent receptor NDN12_05400 PF08281 Sigma-70, region 4 NDN12_05400 PF04542 Sigma-70 region 2 NDN12_05405 PF13533 Biotin-lipoyl like NDN12_05410 PF00873 AcrB/AcrD/AcrF family NDN12_05415 PF00873 AcrB/AcrD/AcrF family NDN12_05420 PF02321 Outer membrane efflux protein NDN12_05425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_05425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_05425 PF09317 Domain of unknown function (DUF1974) NDN12_05450 PF07715 TonB-dependent Receptor Plug Domain NDN12_05460 PF00106 short chain dehydrogenase NDN12_05465 PF00390 Malic enzyme, N-terminal domain NDN12_05465 PF03949 Malic enzyme, NAD binding domain NDN12_05475 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_05475 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_05480 PF00202 Aminotransferase class-III NDN12_05485 PF04958 Arginine N-succinyltransferase beta subunit NDN12_05490 PF00171 Aldehyde dehydrogenase family NDN12_05495 PF04996 Succinylarginine dihydrolase NDN12_05500 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NDN12_05505 PF00324 Amino acid permease NDN12_05515 PF04403 Paraquat-inducible protein A NDN12_05520 PF02470 MlaD protein NDN12_05530 PF00501 AMP-binding enzyme NDN12_05530 PF13193 AMP-binding enzyme C-terminal domain NDN12_05530 PF00668 Condensation domain NDN12_05530 PF00550 Phosphopantetheine attachment site NDN12_05530 PF00975 Thioesterase domain NDN12_05535 PF01569 PAP2 superfamily NDN12_05555 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NDN12_05565 PF07724 AAA domain (Cdc48 subfamily) NDN12_05565 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_05565 PF17871 AAA lid domain NDN12_05565 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_05575 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NDN12_05580 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NDN12_05595 PF05947 Type VI secretion system, TssF NDN12_05610 PF14331 ImcF-related N-terminal domain NDN12_05610 PF06744 Type VI secretion protein IcmF C-terminal NDN12_05610 PF06761 Intracellular multiplication and human macrophage-killing NDN12_05620 PF13488 Glycine zipper NDN12_05620 PF00691 OmpA family NDN12_05635 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_05640 PF00005 ABC transporter NDN12_05640 PF03459 TOBE domain NDN12_05650 PF01545 Cation efflux family NDN12_05650 PF16916 Dimerisation domain of Zinc Transporter NDN12_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_05660 PF03466 LysR substrate binding domain NDN12_05665 PF01810 LysE type translocator NDN12_05670 PF00266 Aminotransferase class-V NDN12_05680 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_05685 PF00581 Rhodanese-like domain NDN12_05690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NDN12_05695 PF00005 ABC transporter NDN12_05700 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_05705 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN12_05710 PF12833 Helix-turn-helix domain NDN12_05710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_05715 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NDN12_05715 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NDN12_05740 PF00582 Universal stress protein family NDN12_05760 PF01327 Polypeptide deformylase NDN12_05765 PF04960 Glutaminase NDN12_05785 PF02607 B12 binding domain NDN12_05785 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDN12_05785 PF00809 Pterin binding enzyme NDN12_05785 PF02574 Homocysteine S-methyltransferase NDN12_05785 PF02310 B12 binding domain NDN12_05790 PF01384 Phosphate transporter family NDN12_05800 PF18073 Rubredoxin metal binding domain NDN12_05805 PF01235 Sodium:alanine symporter family NDN12_05810 PF00324 Amino acid permease NDN12_05820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDN12_05820 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDN12_05825 PF01678 Diaminopimelate epimerase NDN12_05830 PF01810 LysE type translocator NDN12_05835 PF00589 Phage integrase family NDN12_05835 PF02899 Phage integrase, N-terminal SAM-like domain NDN12_05840 PF01012 Electron transfer flavoprotein domain NDN12_05845 PF00766 Electron transfer flavoprotein FAD-binding domain NDN12_05845 PF01012 Electron transfer flavoprotein domain NDN12_05855 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN12_05855 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN12_05880 PF00266 Aminotransferase class-V NDN12_05895 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDN12_05910 PF02687 FtsX-like permease family NDN12_05910 PF12704 MacB-like periplasmic core domain NDN12_05915 PF00005 ABC transporter NDN12_05920 PF00753 Metallo-beta-lactamase superfamily NDN12_05920 PF03772 Competence protein NDN12_05920 PF13567 Domain of unknown function (DUF4131) NDN12_05930 PF01343 Peptidase family S49 NDN12_05930 PF06965 Na+/H+ antiporter 1 NDN12_05940 PF00551 Formyl transferase NDN12_05945 PF02769 AIR synthase related protein, C-terminal domain NDN12_05945 PF00586 AIR synthase related protein, N-terminal domain NDN12_05950 PF01594 AI-2E family transporter NDN12_05955 PF00308 Bacterial dnaA protein NDN12_05955 PF08299 Bacterial dnaA protein helix-turn-helix NDN12_05955 PF11638 DnaA N-terminal domain NDN12_05985 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN12_05985 PF00588 SpoU rRNA Methylase family NDN12_05990 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDN12_06000 PF00691 OmpA family NDN12_06005 PF04052 TolB amino-terminal domain NDN12_06005 PF07676 WD40-like Beta Propeller Repeat NDN12_06015 PF02472 Biopolymer transport protein ExbD/TolR NDN12_06020 PF01618 MotA/TolQ/ExbB proton channel family NDN12_06025 PF03061 Thioesterase superfamily NDN12_06035 PF17864 RuvB AAA lid domain NDN12_06035 PF05491 RuvB C-terminal winged helix domain NDN12_06035 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDN12_06040 PF01330 RuvA N terminal domain NDN12_06040 PF07499 RuvA, C-terminal domain NDN12_06045 PF01966 HD domain NDN12_06055 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDN12_06055 PF02769 AIR synthase related protein, C-terminal domain NDN12_06055 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDN12_06060 PF07690 Major Facilitator Superfamily NDN12_06070 PF01784 NIF3 (NGG1p interacting factor 3) NDN12_06075 PF02595 Glycerate kinase family NDN12_06080 PF00378 Enoyl-CoA hydratase/isomerase NDN12_06085 PF00293 NUDIX domain NDN12_06085 PF01467 Cytidylyltransferase-like NDN12_06100 PF00578 AhpC/TSA family NDN12_06105 PF06508 Queuosine biosynthesis protein QueC NDN12_06115 PF06508 Queuosine biosynthesis protein QueC NDN12_06120 PF04055 Radical SAM superfamily NDN12_06125 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_06125 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_06125 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDN12_06135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_06135 PF03466 LysR substrate binding domain NDN12_06140 PF00005 ABC transporter NDN12_06140 PF12857 TOBE-like domain NDN12_06145 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_06150 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_06165 PF01063 Amino-transferase class IV NDN12_06170 PF02618 YceG-like family NDN12_06175 PF02223 Thymidylate kinase NDN12_06185 PF02910 Fumarate reductase flavoprotein C-term NDN12_06185 PF00890 FAD binding domain NDN12_06190 PF13180 PDZ domain NDN12_06200 PF00679 Elongation factor G C-terminus NDN12_06200 PF00009 Elongation factor Tu GTP binding domain NDN12_06200 PF03144 Elongation factor Tu domain 2 NDN12_06200 PF06421 GTP-binding protein LepA C-terminus NDN12_06205 PF10502 Signal peptidase, peptidase S26 NDN12_06215 PF00035 Double-stranded RNA binding motif NDN12_06215 PF14622 Ribonuclease-III-like NDN12_06220 PF01926 50S ribosome-binding GTPase NDN12_06220 PF07650 KH domain NDN12_06230 PF11967 Recombination protein O N terminal NDN12_06230 PF02565 Recombination protein O C terminal NDN12_06235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDN12_06240 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NDN12_06255 PF01743 Poly A polymerase head domain NDN12_06255 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN12_06260 PF03949 Malic enzyme, NAD binding domain NDN12_06260 PF00390 Malic enzyme, N-terminal domain NDN12_06260 PF01515 Phosphate acetyl/butaryl transferase NDN12_06265 PF00563 EAL domain NDN12_06265 PF00990 Diguanylate cyclase, GGDEF domain NDN12_06265 PF03707 Bacterial signalling protein N terminal repeat NDN12_06270 PF04452 RNA methyltransferase NDN12_06275 PF02219 Methylenetetrahydrofolate reductase NDN12_06280 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NDN12_06280 PF05221 S-adenosyl-L-homocysteine hydrolase NDN12_06290 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN12_06290 PF00753 Metallo-beta-lactamase superfamily NDN12_06305 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_06310 PF09383 NIL domain NDN12_06310 PF00005 ABC transporter NDN12_06315 PF03180 NLPA lipoprotein NDN12_06320 PF02843 Phosphoribosylglycinamide synthetase, C domain NDN12_06320 PF02844 Phosphoribosylglycinamide synthetase, N domain NDN12_06320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDN12_06325 PF02142 MGS-like domain NDN12_06325 PF01808 AICARFT/IMPCHase bienzyme NDN12_06330 PF02954 Bacterial regulatory protein, Fis family NDN12_06350 PF01134 Glucose inhibited division protein A NDN12_06350 PF13932 GidA associated domain NDN12_06355 PF00893 Small Multidrug Resistance protein NDN12_06365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_06365 PF12833 Helix-turn-helix domain NDN12_06375 PF02424 ApbE family NDN12_06385 PF00175 Oxidoreductase NAD-binding domain NDN12_06385 PF00258 Flavodoxin NDN12_06385 PF00667 FAD binding domain NDN12_06400 PF00593 TonB dependent receptor NDN12_06400 PF07715 TonB-dependent Receptor Plug Domain NDN12_06410 PF00860 Permease family NDN12_06415 PF00962 Adenosine/AMP deaminase NDN12_06420 PF01292 Prokaryotic cytochrome b561 NDN12_06430 PF01351 Ribonuclease HII NDN12_06435 PF02599 Global regulator protein family NDN12_06440 PF01842 ACT domain NDN12_06440 PF00696 Amino acid kinase family NDN12_06440 PF13840 ACT domain NDN12_06445 PF01411 tRNA synthetases class II (A) NDN12_06445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN12_06445 PF02272 DHHA1 domain NDN12_06450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN12_06450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN12_06460 PF00583 Acetyltransferase (GNAT) family NDN12_06465 PF13393 Histidyl-tRNA synthetase NDN12_06470 PF00709 Adenylosuccinate synthetase NDN12_06485 PF14403 Circularly permuted ATP-grasp type 2 NDN12_06495 PF08379 Bacterial transglutaminase-like N-terminal region NDN12_06495 PF01841 Transglutaminase-like superfamily NDN12_06510 PF00842 Alanine racemase, C-terminal domain NDN12_06510 PF01168 Alanine racemase, N-terminal domain NDN12_06515 PF00772 DnaB-like helicase N terminal domain NDN12_06515 PF03796 DnaB-like helicase C terminal domain NDN12_06520 PF01638 HxlR-like helix-turn-helix NDN12_06525 PF02525 Flavodoxin-like fold NDN12_06530 PF03948 Ribosomal protein L9, C-terminal domain NDN12_06530 PF01281 Ribosomal protein L9, N-terminal domain NDN12_06535 PF01084 Ribosomal protein S18 NDN12_06540 PF01250 Ribosomal protein S6 NDN12_06550 PF01040 UbiA prenyltransferase family NDN12_06555 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDN12_06560 PF00510 Cytochrome c oxidase subunit III NDN12_06565 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDN12_06570 PF06481 COX Aromatic Rich Motif NDN12_06570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDN12_06580 PF02896 PEP-utilising enzyme, TIM barrel domain NDN12_06580 PF00391 PEP-utilising enzyme, mobile domain NDN12_06580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NDN12_06585 PF03618 Kinase/pyrophosphorylase NDN12_06590 PF00563 EAL domain NDN12_06590 PF00990 Diguanylate cyclase, GGDEF domain NDN12_06590 PF03707 Bacterial signalling protein N terminal repeat NDN12_06595 PF00296 Luciferase-like monooxygenase NDN12_06605 PF01479 S4 domain NDN12_06605 PF00849 RNA pseudouridylate synthase NDN12_06610 PF00583 Acetyltransferase (GNAT) family NDN12_06620 PF00849 RNA pseudouridylate synthase NDN12_06620 PF01479 S4 domain NDN12_06630 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NDN12_06635 PF08676 MutL C terminal dimerisation domain NDN12_06635 PF01119 DNA mismatch repair protein, C-terminal domain NDN12_06645 PF17209 Hfq protein NDN12_06660 PF02525 Flavodoxin-like fold NDN12_06665 PF00881 Nitroreductase family NDN12_06670 PF00149 Calcineurin-like phosphoesterase NDN12_06675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN12_06680 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_06680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDN12_06685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN12_06685 PF00117 Glutamine amidotransferase class-I NDN12_06695 PF14493 Helix-turn-helix domain NDN12_06695 PF05970 PIF1-like helicase NDN12_06715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_06715 PF03466 LysR substrate binding domain NDN12_06720 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_06725 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_06730 PF07859 alpha/beta hydrolase fold NDN12_06735 PF00355 Rieske [2Fe-2S] domain NDN12_06735 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_06740 PF00171 Aldehyde dehydrogenase family NDN12_06745 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_06745 PF00970 Oxidoreductase FAD-binding domain NDN12_06745 PF00175 Oxidoreductase NAD-binding domain NDN12_06750 PF00155 Aminotransferase class I and II NDN12_06755 PF02080 TrkA-C domain NDN12_06755 PF06826 Predicted Permease Membrane Region NDN12_06760 PF03895 YadA-like membrane anchor domain NDN12_06760 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_06760 PF13018 Extended Signal Peptide of Type V secretion system NDN12_06760 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_06760 PF05658 Head domain of trimeric autotransporter adhesin NDN12_06760 PF13018 Extended Signal Peptide of Type V secretion system NDN12_06760 PF05658 Head domain of trimeric autotransporter adhesin NDN12_06760 PF03895 YadA-like membrane anchor domain NDN12_06765 PF00691 OmpA family NDN12_06765 PF04355 SmpA / OmlA family NDN12_06770 PF09339 IclR helix-turn-helix domain NDN12_06770 PF01614 Bacterial transcriptional regulator NDN12_06775 PF01144 Coenzyme A transferase NDN12_06780 PF01144 Coenzyme A transferase NDN12_06785 PF02803 Thiolase, C-terminal domain NDN12_06785 PF00108 Thiolase, N-terminal domain NDN12_06790 PF10397 Adenylosuccinate lyase C-terminus NDN12_06790 PF00206 Lyase NDN12_06795 PF00561 alpha/beta hydrolase fold NDN12_06800 PF07690 Major Facilitator Superfamily NDN12_06805 PF02627 Carboxymuconolactone decarboxylase family NDN12_06810 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDN12_06810 PF00775 Dioxygenase NDN12_06815 PF00775 Dioxygenase NDN12_06820 PF01487 Type I 3-dehydroquinase NDN12_06825 PF05048 Periplasmic copper-binding protein (NosD) NDN12_06830 PF04966 Carbohydrate-selective porin, OprB family NDN12_06835 PF01011 PQQ enzyme repeat NDN12_06835 PF13360 PQQ-like domain NDN12_06845 PF00576 HIUase/Transthyretin family NDN12_06850 PF00860 Permease family NDN12_06860 PF01494 FAD binding domain NDN12_06865 PF00392 Bacterial regulatory proteins, gntR family NDN12_06865 PF07729 FCD domain NDN12_06870 PF03561 Allantoicase repeat NDN12_06875 PF04115 Ureidoglycolate lyase NDN12_06885 PF09084 NMT1/THI5 like NDN12_06890 PF00005 ABC transporter NDN12_06895 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_06900 PF01979 Amidohydrolase family NDN12_06915 PF01872 RibD C-terminal domain NDN12_06925 PF03466 LysR substrate binding domain NDN12_06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_06930 PF00355 Rieske [2Fe-2S] domain NDN12_06935 PF00392 Bacterial regulatory proteins, gntR family NDN12_06935 PF07702 UTRA domain NDN12_06940 PF05962 HutD NDN12_06945 PF17391 Urocanase N-terminal domain NDN12_06945 PF01175 Urocanase Rossmann-like domain NDN12_06945 PF17392 Urocanase C-terminal domain NDN12_06950 PF00221 Aromatic amino acid lyase NDN12_06955 PF00324 Amino acid permease NDN12_06960 PF01979 Amidohydrolase family NDN12_06965 PF00491 Arginase family NDN12_06970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_06970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_06985 PF12833 Helix-turn-helix domain NDN12_06985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_06995 PF00155 Aminotransferase class I and II NDN12_06995 PF00392 Bacterial regulatory proteins, gntR family NDN12_07000 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_07005 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_07020 PF00384 Molybdopterin oxidoreductase NDN12_07025 PF02634 FdhD/NarQ family NDN12_07030 PF04261 Dyp-type peroxidase family NDN12_07040 PF02321 Outer membrane efflux protein NDN12_07045 PF00873 AcrB/AcrD/AcrF family NDN12_07050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_07050 PF00529 HlyD membrane-fusion protein of T1SS NDN12_07055 PF00486 Transcriptional regulatory protein, C terminal NDN12_07055 PF00072 Response regulator receiver domain NDN12_07065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_07065 PF00512 His Kinase A (phospho-acceptor) domain NDN12_07065 PF00672 HAMP domain NDN12_07070 PF00296 Luciferase-like monooxygenase NDN12_07075 PF00248 Aldo/keto reductase family NDN12_07085 PF16868 NMT1-like family NDN12_07095 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_07110 PF00005 ABC transporter NDN12_07115 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_07125 PF00158 Sigma-54 interaction domain NDN12_07130 PF03459 TOBE domain NDN12_07135 PF00005 ABC transporter NDN12_07145 PF00440 Bacterial regulatory proteins, tetR family NDN12_07145 PF17932 Tetracyclin repressor-like, C-terminal domain NDN12_07160 PF00106 short chain dehydrogenase NDN12_07165 PF00743 Flavin-binding monooxygenase-like NDN12_07170 PF04072 Leucine carboxyl methyltransferase NDN12_07175 PF01435 Peptidase family M48 NDN12_07180 PF00027 Cyclic nucleotide-binding domain NDN12_07180 PF13545 Crp-like helix-turn-helix domain NDN12_07185 PF02566 OsmC-like protein NDN12_07195 PF17871 AAA lid domain NDN12_07195 PF02861 Clp amino terminal domain, pathogenicity island component NDN12_07195 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_07195 PF07724 AAA domain (Cdc48 subfamily) NDN12_07195 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_07205 PF10672 S-adenosylmethionine-dependent methyltransferase NDN12_07205 PF02926 THUMP domain NDN12_07205 PF01170 Putative RNA methylase family UPF0020 NDN12_07215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN12_07215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN12_07220 PF01979 Amidohydrolase family NDN12_07230 PF01389 OmpA-like transmembrane domain NDN12_07230 PF00691 OmpA family NDN12_07245 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_07245 PF04717 Type VI secretion system, phage-baseplate injector NDN12_07245 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_07280 PF02390 Putative methyltransferase NDN12_07290 PF00043 Glutathione S-transferase, C-terminal domain NDN12_07290 PF02798 Glutathione S-transferase, N-terminal domain NDN12_07300 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_07300 PF13192 Thioredoxin domain NDN12_07320 PF00487 Fatty acid desaturase NDN12_07330 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN12_07330 PF00578 AhpC/TSA family NDN12_07335 PF11898 Domain of unknown function (DUF3418) NDN12_07335 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NDN12_07335 PF04408 Helicase associated domain (HA2) NDN12_07335 PF00271 Helicase conserved C-terminal domain NDN12_07335 PF00270 DEAD/DEAH box helicase NDN12_07340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDN12_07340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDN12_07350 PF04055 Radical SAM superfamily NDN12_07355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_07355 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_07370 PF05036 Sporulation related domain NDN12_07370 PF03330 Lytic transglycolase NDN12_07375 PF13406 Transglycosylase SLT domain NDN12_07380 PF01098 Cell cycle protein NDN12_07390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDN12_07390 PF14489 QueF-like protein NDN12_07395 PF01061 ABC-2 type transporter NDN12_07400 PF00005 ABC transporter NDN12_07430 PF00464 Serine hydroxymethyltransferase NDN12_07445 PF02785 Biotin carboxylase C-terminal domain NDN12_07445 PF00289 Biotin carboxylase, N-terminal domain NDN12_07445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_07450 PF08753 NikR C terminal nickel binding domain NDN12_07450 PF01402 Ribbon-helix-helix protein, copG family NDN12_07455 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_07470 PF00005 ABC transporter NDN12_07480 PF00037 4Fe-4S binding domain NDN12_07485 PF16325 Peptidase family U32 C-terminal domain NDN12_07485 PF01136 Peptidase family U32 NDN12_07495 PF05360 yiaA/B two helix domain NDN12_07500 PF00472 RF-1 domain NDN12_07500 PF03462 PCRF domain NDN12_07505 PF13847 Methyltransferase domain NDN12_07505 PF17827 PrmC N-terminal domain NDN12_07520 PF00106 short chain dehydrogenase NDN12_07530 PF01613 Flavin reductase like domain NDN12_07535 PF12833 Helix-turn-helix domain NDN12_07535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_07540 PF00561 alpha/beta hydrolase fold NDN12_07545 PF03280 Proteobacterial lipase chaperone protein NDN12_07555 PF00899 ThiF family NDN12_07560 PF03109 ABC1 family NDN12_07565 PF02152 Dihydroneopterin aldolase NDN12_07585 PF03232 Ubiquinone biosynthesis protein COQ7 NDN12_07590 PF07690 Major Facilitator Superfamily NDN12_07595 PF17243 POTRA domain TamA domain 1 NDN12_07595 PF01103 Surface antigen NDN12_07595 PF07244 Surface antigen variable number repeat NDN12_07620 PF00330 Aconitase family (aconitate hydratase) NDN12_07620 PF11791 Aconitate B N-terminal domain NDN12_07620 PF06434 Aconitate hydratase 2 N-terminus NDN12_07630 PF00939 Sodium:sulfate symporter transmembrane region NDN12_07635 PF00027 Cyclic nucleotide-binding domain NDN12_07635 PF00520 Ion transport protein NDN12_07640 PF01032 FecCD transport family NDN12_07645 PF01032 FecCD transport family NDN12_07650 PF00005 ABC transporter NDN12_07655 PF01497 Periplasmic binding protein NDN12_07660 PF09997 Predicted membrane protein (DUF2238) NDN12_07665 PF07690 Major Facilitator Superfamily NDN12_07675 PF02677 Epoxyqueuosine reductase QueH NDN12_07680 PF03466 LysR substrate binding domain NDN12_07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_07685 PF04284 Protein of unknown function (DUF441) NDN12_07700 PF00970 Oxidoreductase FAD-binding domain NDN12_07700 PF00175 Oxidoreductase NAD-binding domain NDN12_07705 PF18389 TrmO C-terminal domain NDN12_07705 PF01980 tRNA-methyltransferase O NDN12_07710 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN12_07710 PF00437 Type II/IV secretion system protein NDN12_07720 PF00072 Response regulator receiver domain NDN12_07720 PF00486 Transcriptional regulatory protein, C terminal NDN12_07725 PF00512 His Kinase A (phospho-acceptor) domain NDN12_07725 PF08521 Two-component sensor kinase N-terminal NDN12_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_07735 PF00293 NUDIX domain NDN12_07745 PF14814 Bifunctional transglycosylase second domain NDN12_07745 PF00912 Transglycosylase NDN12_07745 PF00905 Penicillin binding protein transpeptidase domain NDN12_07750 PF01513 ATP-NAD kinase NDN12_07755 PF07023 Protein of unknown function (DUF1315) NDN12_07760 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_07760 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_07760 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_07760 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_07760 PF04717 Type VI secretion system, phage-baseplate injector NDN12_07760 PF04717 Type VI secretion system, phage-baseplate injector NDN12_07775 PF02885 Glycosyl transferase family, helical bundle domain NDN12_07775 PF00591 Glycosyl transferase family, a/b domain NDN12_07780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_07780 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_07780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_07795 PF01842 ACT domain NDN12_07795 PF01817 Chorismate mutase type II NDN12_07795 PF00800 Prephenate dehydratase NDN12_07800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN12_07810 PF07687 Peptidase dimerisation domain NDN12_07810 PF01546 Peptidase family M20/M25/M40 NDN12_07815 PF01137 RNA 3'-terminal phosphate cyclase NDN12_07815 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NDN12_07830 PF01139 tRNA-splicing ligase RtcB NDN12_07835 PF00753 Metallo-beta-lactamase superfamily NDN12_07840 PF06956 Regulator of RNA terminal phosphate cyclase NDN12_07840 PF00158 Sigma-54 interaction domain NDN12_07855 PF03883 Peroxide stress protein YaaA NDN12_07875 PF05690 Thiazole biosynthesis protein ThiG NDN12_07885 PF04241 Protein of unknown function (DUF423) NDN12_07890 PF04542 Sigma-70 region 2 NDN12_07890 PF00140 Sigma-70 factor, region 1.2 NDN12_07890 PF04545 Sigma-70, region 4 NDN12_07900 PF00313 'Cold-shock' DNA-binding domain NDN12_07905 PF00271 Helicase conserved C-terminal domain NDN12_07905 PF00270 DEAD/DEAH box helicase NDN12_07910 PF01116 Fructose-bisphosphate aldolase class-II NDN12_07915 PF00639 PPIC-type PPIASE domain NDN12_07915 PF09312 SurA N-terminal domain NDN12_07920 PF04453 LPS transport system D NDN12_07920 PF03968 OstA-like protein NDN12_07925 PF01636 Phosphotransferase enzyme family NDN12_07930 PF00483 Nucleotidyl transferase NDN12_07935 PF02527 rRNA small subunit methyltransferase G NDN12_07940 PF13614 AAA domain NDN12_07945 PF02195 ParB-like nuclease domain NDN12_07945 PF17762 HTH domain found in ParB protein NDN12_07950 PF01618 MotA/TolQ/ExbB proton channel family NDN12_07960 PF00664 ABC transporter transmembrane region NDN12_07960 PF00005 ABC transporter NDN12_07965 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDN12_07970 PF02348 Cytidylyltransferase NDN12_07975 PF09115 DNA polymerase III, delta subunit, C terminal NDN12_07995 PF01026 TatD related DNase NDN12_08005 PF07963 Prokaryotic N-terminal methylation motif NDN12_08015 PF11612 Type II secretion system (T2SS), protein J NDN12_08015 PF07963 Prokaryotic N-terminal methylation motif NDN12_08020 PF03934 Type II secretion system (T2SS), protein K NDN12_08030 PF03167 Uracil DNA glycosylase superfamily NDN12_08040 PF14437 MafB19-like deaminase NDN12_08050 PF02224 Cytidylate kinase NDN12_08055 PF00575 S1 RNA binding domain NDN12_08060 PF00216 Bacterial DNA-binding protein NDN12_08085 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDN12_08090 PF03956 Lysine exporter LysO NDN12_08095 PF00440 Bacterial regulatory proteins, tetR family NDN12_08100 PF07690 Major Facilitator Superfamily NDN12_08105 PF00743 Flavin-binding monooxygenase-like NDN12_08115 PF03969 AFG1-like ATPase NDN12_08120 PF01274 Malate synthase NDN12_08155 PF05525 Branched-chain amino acid transport protein NDN12_08160 PF00557 Metallopeptidase family M24 NDN12_08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_08165 PF03466 LysR substrate binding domain NDN12_08170 PF02824 TGS domain NDN12_08170 PF04607 Region found in RelA / SpoT proteins NDN12_08170 PF13291 ACT domain NDN12_08180 PF00462 Glutaredoxin NDN12_08185 PF00202 Aminotransferase class-III NDN12_08190 PF00571 CBS domain NDN12_08215 PF00448 SRP54-type protein, GTPase domain NDN12_08215 PF02881 SRP54-type protein, helical bundle domain NDN12_08250 PF07715 TonB-dependent Receptor Plug Domain NDN12_08250 PF07660 Secretin and TonB N terminus short domain NDN12_08250 PF00593 TonB dependent receptor NDN12_08260 PF08173 Membrane bound YbgT-like protein NDN12_08265 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_08270 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_08290 PF00294 pfkB family carbohydrate kinase NDN12_08300 PF05193 Peptidase M16 inactive domain NDN12_08300 PF08367 Peptidase M16C associated NDN12_08300 PF00675 Insulinase (Peptidase family M16) NDN12_08305 PF02253 Phospholipase A1 NDN12_08315 PF02386 Cation transport protein NDN12_08320 PF02080 TrkA-C domain NDN12_08320 PF02254 TrkA-N domain NDN12_08325 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_08325 PF00585 C-terminal regulatory domain of Threonine dehydratase NDN12_08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDN12_08345 PF00245 Alkaline phosphatase NDN12_08355 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN12_08355 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN12_08365 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDN12_08370 PF02861 Clp amino terminal domain, pathogenicity island component NDN12_08370 PF17871 AAA lid domain NDN12_08370 PF07724 AAA domain (Cdc48 subfamily) NDN12_08370 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_08370 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_08375 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDN12_08380 PF12848 ABC transporter NDN12_08380 PF00005 ABC transporter NDN12_08380 PF16326 ABC transporter C-terminal domain NDN12_08385 PF00793 DAHP synthetase I family NDN12_08390 PF12697 Alpha/beta hydrolase family NDN12_08400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_08400 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_08425 PF06418 CTP synthase N-terminus NDN12_08425 PF00117 Glutamine amidotransferase class-I NDN12_08430 PF00793 DAHP synthetase I family NDN12_08435 PF00113 Enolase, C-terminal TIM barrel domain NDN12_08435 PF03952 Enolase, N-terminal domain NDN12_08440 PF04977 Septum formation initiator NDN12_08445 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDN12_08465 PF04143 Sulphur transport NDN12_08475 PF00753 Metallo-beta-lactamase superfamily NDN12_08490 PF00296 Luciferase-like monooxygenase NDN12_08505 PF12833 Helix-turn-helix domain NDN12_08510 PF01810 LysE type translocator NDN12_08540 PF13091 PLD-like domain NDN12_08545 PF02583 Metal-sensitive transcriptional repressor NDN12_08550 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_08550 PF00107 Zinc-binding dehydrogenase NDN12_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_08555 PF03459 TOBE domain NDN12_08560 PF01425 Amidase NDN12_08565 PF02785 Biotin carboxylase C-terminal domain NDN12_08565 PF00289 Biotin carboxylase, N-terminal domain NDN12_08565 PF00364 Biotin-requiring enzyme NDN12_08565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_08570 PF07729 FCD domain NDN12_08570 PF00392 Bacterial regulatory proteins, gntR family NDN12_08580 PF12833 Helix-turn-helix domain NDN12_08580 PF06719 AraC-type transcriptional regulator N-terminus NDN12_08585 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_08585 PF00107 Zinc-binding dehydrogenase NDN12_08590 PF01965 DJ-1/PfpI family NDN12_08595 PF00072 Response regulator receiver domain NDN12_08595 PF00486 Transcriptional regulatory protein, C terminal NDN12_08600 PF02558 Ketopantoate reductase PanE/ApbA NDN12_08600 PF08546 Ketopantoate reductase PanE/ApbA C terminal NDN12_08610 PF13533 Biotin-lipoyl like NDN12_08615 PF07690 Major Facilitator Superfamily NDN12_08650 PF00892 EamA-like transporter family NDN12_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_08655 PF03466 LysR substrate binding domain NDN12_08660 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NDN12_08660 PF18381 YcaO cyclodehydratase C-terminal domain NDN12_08670 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_08680 PF00376 MerR family regulatory protein NDN12_08680 PF09278 MerR, DNA binding NDN12_08685 PF00403 Heavy-metal-associated domain NDN12_08690 PF00743 Flavin-binding monooxygenase-like NDN12_08700 PF00196 Bacterial regulatory proteins, luxR family NDN12_08705 PF01425 Amidase NDN12_08710 PF04389 Peptidase family M28 NDN12_08710 PF01447 Thermolysin metallopeptidase, catalytic domain NDN12_08710 PF02868 Thermolysin metallopeptidase, alpha-helical domain NDN12_08720 PF00672 HAMP domain NDN12_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_08720 PF00512 His Kinase A (phospho-acceptor) domain NDN12_08725 PF00072 Response regulator receiver domain NDN12_08725 PF00486 Transcriptional regulatory protein, C terminal NDN12_08740 PF05114 Protein of unknown function (DUF692) NDN12_08750 PF04542 Sigma-70 region 2 NDN12_08750 PF08281 Sigma-70, region 4 NDN12_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_08790 PF08521 Two-component sensor kinase N-terminal NDN12_08790 PF00512 His Kinase A (phospho-acceptor) domain NDN12_08795 PF00072 Response regulator receiver domain NDN12_08795 PF00486 Transcriptional regulatory protein, C terminal NDN12_08825 PF03435 Saccharopine dehydrogenase NADP binding domain NDN12_08835 PF00561 alpha/beta hydrolase fold NDN12_08840 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_08840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_08855 PF13411 MerR HTH family regulatory protein NDN12_08865 PF02525 Flavodoxin-like fold NDN12_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_08870 PF03466 LysR substrate binding domain NDN12_08875 PF08281 Sigma-70, region 4 NDN12_08875 PF04542 Sigma-70 region 2 NDN12_08885 PF07715 TonB-dependent Receptor Plug Domain NDN12_08885 PF00593 TonB dependent receptor NDN12_08895 PF04575 Protein of unknown function (DUF560) NDN12_08905 PF01126 Heme oxygenase NDN12_08925 PF07690 Major Facilitator Superfamily NDN12_08935 PF12833 Helix-turn-helix domain NDN12_08935 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_08945 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_08950 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_08995 PF02798 Glutathione S-transferase, N-terminal domain NDN12_09000 PF03466 LysR substrate binding domain NDN12_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_09005 PF03788 LrgA family NDN12_09010 PF04172 LrgB-like family NDN12_09015 PF07715 TonB-dependent Receptor Plug Domain NDN12_09015 PF00593 TonB dependent receptor NDN12_09020 PF07715 TonB-dependent Receptor Plug Domain NDN12_09020 PF00593 TonB dependent receptor NDN12_09035 PF01593 Flavin containing amine oxidoreductase NDN12_09045 PF07859 alpha/beta hydrolase fold NDN12_09050 PF00561 alpha/beta hydrolase fold NDN12_09060 PF00440 Bacterial regulatory proteins, tetR family NDN12_09065 PF08281 Sigma-70, region 4 NDN12_09065 PF04542 Sigma-70 region 2 NDN12_09075 PF07715 TonB-dependent Receptor Plug Domain NDN12_09075 PF00593 TonB dependent receptor NDN12_09095 PF00296 Luciferase-like monooxygenase NDN12_09100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_09105 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_09110 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_09110 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_09115 PF00005 ABC transporter NDN12_09115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_09120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_09120 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_09120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_09130 PF00005 ABC transporter NDN12_09130 PF00664 ABC transporter transmembrane region NDN12_09135 PF00664 ABC transporter transmembrane region NDN12_09135 PF00005 ABC transporter NDN12_09145 PF07715 TonB-dependent Receptor Plug Domain NDN12_09145 PF00593 TonB dependent receptor NDN12_09155 PF00296 Luciferase-like monooxygenase NDN12_09160 PF00158 Sigma-54 interaction domain NDN12_09165 PF00902 Sec-independent protein translocase protein (TatC) NDN12_09170 PF02416 mttA/Hcf106 family NDN12_09175 PF02416 mttA/Hcf106 family NDN12_09180 PF00005 ABC transporter NDN12_09185 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_09190 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_09200 PF00296 Luciferase-like monooxygenase NDN12_09205 PF03544 Gram-negative bacterial TonB protein C-terminal NDN12_09210 PF01618 MotA/TolQ/ExbB proton channel family NDN12_09215 PF02472 Biopolymer transport protein ExbD/TolR NDN12_09220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_09230 PF00593 TonB dependent receptor NDN12_09230 PF07715 TonB-dependent Receptor Plug Domain NDN12_09235 PF00296 Luciferase-like monooxygenase NDN12_09240 PF03358 NADPH-dependent FMN reductase NDN12_09245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_09245 PF03466 LysR substrate binding domain NDN12_09260 PF09905 DNA-binding protein VF530 NDN12_09280 PF02463 RecF/RecN/SMC N terminal domain NDN12_09285 PF12705 PD-(D/E)XK nuclease superfamily NDN12_09285 PF00580 UvrD/REP helicase N-terminal domain NDN12_09285 PF13361 UvrD-like helicase C-terminal domain NDN12_09395 PF01066 CDP-alcohol phosphatidyltransferase NDN12_09400 PF12146 Serine aminopeptidase, S33 NDN12_09400 PF12147 Putative methyltransferase NDN12_09405 PF00782 Dual specificity phosphatase, catalytic domain NDN12_09425 PF12833 Helix-turn-helix domain NDN12_09430 PF02525 Flavodoxin-like fold NDN12_09440 PF16220 Domain of unknown function (DUF4880) NDN12_09440 PF04773 FecR protein NDN12_09445 PF08281 Sigma-70, region 4 NDN12_09445 PF04542 Sigma-70 region 2 NDN12_09455 PF04185 Phosphoesterase family NDN12_09455 PF05506 Domain of unknown function (DUF756) NDN12_09465 PF00990 Diguanylate cyclase, GGDEF domain NDN12_09470 PF01264 Chorismate synthase NDN12_09475 PF05175 Methyltransferase small domain NDN12_09480 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_09490 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_09490 PF17862 AAA+ lid domain NDN12_09490 PF01434 Peptidase family M41 NDN12_09500 PF05166 YcgL domain NDN12_09505 PF01612 3'-5' exonuclease NDN12_09505 PF00570 HRDC domain NDN12_09510 PF02132 RecR protein NDN12_09510 PF13662 Toprim domain NDN12_09515 PF02575 YbaB/EbfC DNA-binding family NDN12_09520 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_09530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_09530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_09545 PF00857 Isochorismatase family NDN12_09560 PF00893 Small Multidrug Resistance protein NDN12_09565 PF00959 Phage lysozyme NDN12_09580 PF01230 HIT domain NDN12_09605 PF02684 Lipid-A-disaccharide synthetase NDN12_09635 PF01925 Sulfite exporter TauE/SafE NDN12_09640 PF00793 DAHP synthetase I family NDN12_09645 PF00719 Inorganic pyrophosphatase NDN12_09660 PF00593 TonB dependent receptor NDN12_09660 PF07715 TonB-dependent Receptor Plug Domain NDN12_09670 PF02654 Cobalamin-5-phosphate synthase NDN12_09685 PF02277 Phosphoribosyltransferase NDN12_09690 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NDN12_09700 PF13419 Haloacid dehalogenase-like hydrolase NDN12_09710 PF07715 TonB-dependent Receptor Plug Domain NDN12_09710 PF00593 TonB dependent receptor NDN12_09715 PF07690 Major Facilitator Superfamily NDN12_09730 PF06276 Ferric iron reductase FhuF-like transporter NDN12_09730 PF04183 IucA / IucC family NDN12_09735 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN12_09740 PF06276 Ferric iron reductase FhuF-like transporter NDN12_09740 PF04183 IucA / IucC family NDN12_09745 PF04073 Aminoacyl-tRNA editing domain NDN12_09755 PF03109 ABC1 family NDN12_09760 PF01494 FAD binding domain NDN12_09765 PF01614 Bacterial transcriptional regulator NDN12_09765 PF09339 IclR helix-turn-helix domain NDN12_09770 PF00171 Aldehyde dehydrogenase family NDN12_09775 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_09780 PF07848 PaaX-like protein NDN12_09780 PF08223 PaaX-like protein C-terminal domain NDN12_09785 PF14535 AMP-binding enzyme C-terminal domain NDN12_09785 PF00501 AMP-binding enzyme NDN12_09790 PF00108 Thiolase, N-terminal domain NDN12_09790 PF02803 Thiolase, C-terminal domain NDN12_09795 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN12_09795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_09795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_09800 PF00378 Enoyl-CoA hydratase/isomerase NDN12_09805 PF00378 Enoyl-CoA hydratase/isomerase NDN12_09810 PF00970 Oxidoreductase FAD-binding domain NDN12_09810 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_09810 PF00175 Oxidoreductase NAD-binding domain NDN12_09815 PF01883 Iron-sulfur cluster assembly protein NDN12_09820 PF05138 Phenylacetic acid catabolic protein NDN12_09825 PF06243 Phenylacetic acid degradation B NDN12_09830 PF05138 Phenylacetic acid catabolic protein NDN12_09835 PF00171 Aldehyde dehydrogenase family NDN12_09835 PF01575 MaoC like domain NDN12_09845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_09845 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_09845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_09850 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_09855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_09860 PF00487 Fatty acid desaturase NDN12_09865 PF12833 Helix-turn-helix domain NDN12_09865 PF12852 Cupin NDN12_09870 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_09870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDN12_09875 PF07977 FabA-like domain NDN12_09880 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_09880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDN12_09890 PF07244 Surface antigen variable number repeat NDN12_09890 PF01103 Surface antigen NDN12_09895 PF17820 PDZ domain NDN12_09895 PF02163 Peptidase family M50 NDN12_09895 PF13180 PDZ domain NDN12_09900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDN12_09900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDN12_09900 PF13288 DXP reductoisomerase C-terminal domain NDN12_09910 PF01255 Putative undecaprenyl diphosphate synthase NDN12_09915 PF01765 Ribosome recycling factor NDN12_09920 PF00696 Amino acid kinase family NDN12_09925 PF04055 Radical SAM superfamily NDN12_09925 PF00919 Uncharacterized protein family UPF0004 NDN12_09925 PF18693 TRAM domain NDN12_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_09930 PF00512 His Kinase A (phospho-acceptor) domain NDN12_09930 PF00989 PAS fold NDN12_09935 PF02954 Bacterial regulatory protein, Fis family NDN12_09935 PF00072 Response regulator receiver domain NDN12_09935 PF00158 Sigma-54 interaction domain NDN12_09940 PF00440 Bacterial regulatory proteins, tetR family NDN12_09945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN12_09945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN12_09955 PF02542 YgbB family NDN12_09965 PF01266 FAD dependent oxidoreductase NDN12_09980 PF10415 Fumarase C C-terminus NDN12_09980 PF00206 Lyase NDN12_09985 PF16363 GDP-mannose 4,6 dehydratase NDN12_09990 PF02635 DsrE/DsrF-like family NDN12_10005 PF04358 DsrC like protein NDN12_10010 PF00892 EamA-like transporter family NDN12_10015 PF00392 Bacterial regulatory proteins, gntR family NDN12_10015 PF00155 Aminotransferase class I and II NDN12_10020 PF01638 HxlR-like helix-turn-helix NDN12_10025 PF00994 Probable molybdopterin binding domain NDN12_10025 PF03454 MoeA C-terminal region (domain IV) NDN12_10025 PF03453 MoeA N-terminal region (domain I and II) NDN12_10030 PF00994 Probable molybdopterin binding domain NDN12_10030 PF01967 MoaC family NDN12_10035 PF02391 MoaE protein NDN12_10045 PF04055 Radical SAM superfamily NDN12_10045 PF06463 Molybdenum Cofactor Synthesis C NDN12_10050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_10050 PF00384 Molybdopterin oxidoreductase NDN12_10050 PF01568 Molydopterin dinucleotide binding domain NDN12_10060 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_10065 PF03466 LysR substrate binding domain NDN12_10070 PF06779 Uncharacterised MFS-type transporter YbfB NDN12_10075 PF12804 MobA-like NTP transferase domain NDN12_10080 PF04324 BFD-like [2Fe-2S] binding domain NDN12_10080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_10080 PF00384 Molybdopterin oxidoreductase NDN12_10080 PF01568 Molydopterin dinucleotide binding domain NDN12_10085 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN12_10085 PF04324 BFD-like [2Fe-2S] binding domain NDN12_10085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_10085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_10085 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_10090 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN12_10090 PF13806 Rieske-like [2Fe-2S] domain NDN12_10090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_10090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_10090 PF04324 BFD-like [2Fe-2S] binding domain NDN12_10095 PF07690 Major Facilitator Superfamily NDN12_10105 PF00005 ABC transporter NDN12_10110 PF01220 Dehydroquinase class II NDN12_10115 PF00364 Biotin-requiring enzyme NDN12_10120 PF02785 Biotin carboxylase C-terminal domain NDN12_10120 PF00289 Biotin carboxylase, N-terminal domain NDN12_10120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_10130 PF01425 Amidase NDN12_10135 PF12832 MFS_1 like family NDN12_10140 PF00324 Amino acid permease NDN12_10150 PF14497 Glutathione S-transferase, C-terminal domain NDN12_10150 PF02798 Glutathione S-transferase, N-terminal domain NDN12_10165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_10175 PF01645 Conserved region in glutamate synthase NDN12_10205 PF01565 FAD binding domain NDN12_10205 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDN12_10210 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN12_10250 PF00465 Iron-containing alcohol dehydrogenase NDN12_10255 PF03061 Thioesterase superfamily NDN12_10260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDN12_10260 PF12170 DNA polymerase III tau subunit V interacting with alpha NDN12_10260 PF12169 DNA polymerase III subunits gamma and tau domain III NDN12_10265 PF08007 Cupin superfamily protein NDN12_10290 PF01740 STAS domain NDN12_10290 PF00916 Sulfate permease family NDN12_10295 PF00375 Sodium:dicarboxylate symporter family NDN12_10305 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NDN12_10310 PF00924 Mechanosensitive ion channel NDN12_10360 PF03616 Sodium/glutamate symporter NDN12_10380 PF00005 ABC transporter NDN12_10380 PF00664 ABC transporter transmembrane region NDN12_10385 PF01575 MaoC like domain NDN12_10390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_10390 PF12833 Helix-turn-helix domain NDN12_10395 PF01597 Glycine cleavage H-protein NDN12_10400 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NDN12_10400 PF18416 N-acetylglucosamine binding protein domain 2 NDN12_10405 PF10415 Fumarase C C-terminus NDN12_10405 PF00206 Lyase NDN12_10410 PF00474 Sodium:solute symporter family NDN12_10415 PF01037 Lrp/AsnC ligand binding domain NDN12_10420 PF00171 Aldehyde dehydrogenase family NDN12_10420 PF01619 Proline dehydrogenase NDN12_10420 PF14850 DNA-binding domain of Proline dehydrogenase NDN12_10420 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NDN12_10425 PF04229 GrpB protein NDN12_10430 PF05958 tRNA (Uracil-5-)-methyltransferase NDN12_10440 PF09992 Phosphodiester glycosidase NDN12_10450 PF09857 Putative toxin of bacterial toxin-antitoxin pair NDN12_10485 PF00717 Peptidase S24-like NDN12_10485 PF01726 LexA DNA binding domain NDN12_10490 PF04264 YceI-like domain NDN12_10510 PF02779 Transketolase, pyrimidine binding domain NDN12_10510 PF02780 Transketolase, C-terminal domain NDN12_10510 PF00456 Transketolase, thiamine diphosphate binding domain NDN12_10515 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDN12_10515 PF02772 S-adenosylmethionine synthetase, central domain NDN12_10515 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDN12_10535 PF03891 Domain of unknown function (DUF333) NDN12_10545 PF01266 FAD dependent oxidoreductase NDN12_10550 PF00313 'Cold-shock' DNA-binding domain NDN12_10555 PF00313 'Cold-shock' DNA-binding domain NDN12_10570 PF02075 Crossover junction endodeoxyribonuclease RuvC NDN12_10575 PF03853 YjeF-related protein N-terminus NDN12_10575 PF01256 Carbohydrate kinase NDN12_10580 PF08331 Domain of unknown function (DUF1730) NDN12_10585 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_10585 PF04055 Radical SAM superfamily NDN12_10600 PF16970 Type-1 fimbrial protein, A NDN12_10605 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_10605 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_10610 PF00577 Outer membrane usher protein NDN12_10610 PF13954 PapC N-terminal domain NDN12_10610 PF13953 PapC C-terminal domain NDN12_10615 PF09160 FimH, mannose binding NDN12_10630 PF18417 L-lysine epsilon oxidase C-terminal domain NDN12_10630 PF17990 L-Lysine epsilon oxidase N-terminal NDN12_10640 PF00199 Catalase NDN12_10725 PF00857 Isochorismatase family NDN12_10750 PF01709 Transcriptional regulator NDN12_10765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_10765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_10775 PF00296 Luciferase-like monooxygenase NDN12_10780 PF03180 NLPA lipoprotein NDN12_10785 PF09383 NIL domain NDN12_10785 PF00005 ABC transporter NDN12_10790 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_10795 PF01926 50S ribosome-binding GTPase NDN12_10795 PF06071 Protein of unknown function (DUF933) NDN12_10800 PF02311 AraC-like ligand binding domain NDN12_10800 PF12833 Helix-turn-helix domain NDN12_10815 PF00027 Cyclic nucleotide-binding domain NDN12_10815 PF13545 Crp-like helix-turn-helix domain NDN12_10830 PF01361 Tautomerase enzyme NDN12_10835 PF02222 ATP-grasp domain NDN12_10840 PF08335 GlnD PII-uridylyltransferase NDN12_10840 PF01966 HD domain NDN12_10840 PF01909 Nucleotidyltransferase domain NDN12_10845 PF00155 Aminotransferase class I and II NDN12_10850 PF07715 TonB-dependent Receptor Plug Domain NDN12_10850 PF00593 TonB dependent receptor NDN12_10860 PF01037 Lrp/AsnC ligand binding domain NDN12_10865 PF13533 Biotin-lipoyl like NDN12_10870 PF00873 AcrB/AcrD/AcrF family NDN12_10875 PF01810 LysE type translocator NDN12_10885 PF00255 Glutathione peroxidase NDN12_10890 PF01641 SelR domain NDN12_10895 PF00155 Aminotransferase class I and II NDN12_10905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDN12_10905 PF14579 Helix-hairpin-helix motif NDN12_10905 PF02811 PHP domain NDN12_10905 PF01336 OB-fold nucleic acid binding domain NDN12_10905 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDN12_10910 PF00588 SpoU rRNA Methylase family NDN12_10915 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_10930 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_10930 PF13192 Thioredoxin domain NDN12_10940 PF05816 Toxic anion resistance protein (TelA) NDN12_10970 PF02673 Bacitracin resistance protein BacA NDN12_10980 PF00156 Phosphoribosyl transferase domain NDN12_10985 PF02674 Colicin V production protein NDN12_10990 PF01180 Dihydroorotate dehydrogenase NDN12_11010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN12_11010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN12_11015 PF00881 Nitroreductase family NDN12_11030 PF00162 Phosphoglycerate kinase NDN12_11040 PF02545 Maf-like protein NDN12_11050 PF07690 Major Facilitator Superfamily NDN12_11065 PF00144 Beta-lactamase NDN12_11080 PF02803 Thiolase, C-terminal domain NDN12_11080 PF00108 Thiolase, N-terminal domain NDN12_11095 PF03737 Aldolase/RraA NDN12_11100 PF13460 NAD(P)H-binding NDN12_11105 PF01649 Ribosomal protein S20 NDN12_11115 PF00041 Fibronectin type III domain NDN12_11115 PF12561 ToxR activated gene A lipoprotein domain NDN12_11125 PF00459 Inositol monophosphatase family NDN12_11130 PF13419 Haloacid dehalogenase-like hydrolase NDN12_11135 PF01479 S4 domain NDN12_11140 PF00154 recA bacterial DNA recombination protein NDN12_11145 PF02631 RecX family NDN12_11165 PF00216 Bacterial DNA-binding protein NDN12_11180 PF02082 Transcriptional regulator NDN12_11185 PF00266 Aminotransferase class-V NDN12_11190 PF01592 NifU-like N terminal domain NDN12_11195 PF01521 Iron-sulphur cluster biosynthesis NDN12_11200 PF00226 DnaJ domain NDN12_11200 PF07743 HSCB C-terminal oligomerisation domain NDN12_11205 PF00012 Hsp70 protein NDN12_11210 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_11220 PF00211 Adenylate and Guanylate cyclase catalytic domain NDN12_11230 PF02559 CarD-like/TRCF domain NDN12_11230 PF00270 DEAD/DEAH box helicase NDN12_11230 PF00271 Helicase conserved C-terminal domain NDN12_11230 PF03461 TRCF domain NDN12_11230 PF17757 UvrB interaction domain NDN12_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_11245 PF03466 LysR substrate binding domain NDN12_11250 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDN12_11255 PF01810 LysE type translocator NDN12_11260 PF03594 Benzoate membrane transport protein NDN12_11265 PF00999 Sodium/hydrogen exchanger family NDN12_11265 PF02254 TrkA-N domain NDN12_11270 PF02308 MgtC family NDN12_11290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NDN12_11290 PF11940 Domain of unknown function (DUF3458) Ig-like fold NDN12_11290 PF01433 Peptidase family M1 domain NDN12_11320 PF02110 Hydroxyethylthiazole kinase family NDN12_11325 PF07690 Major Facilitator Superfamily NDN12_11330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN12_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_11340 PF03466 LysR substrate binding domain NDN12_11350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_11350 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_11350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_11355 PF00171 Aldehyde dehydrogenase family NDN12_11360 PF01958 Domain of unknown function DUF108 NDN12_11360 PF03447 Homoserine dehydrogenase, NAD binding domain NDN12_11370 PF12697 Alpha/beta hydrolase family NDN12_11380 PF07690 Major Facilitator Superfamily NDN12_11385 PF14759 Reductase C-terminal NDN12_11385 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_11390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_11400 PF00355 Rieske [2Fe-2S] domain NDN12_11410 PF00355 Rieske [2Fe-2S] domain NDN12_11415 PF09339 IclR helix-turn-helix domain NDN12_11415 PF01614 Bacterial transcriptional regulator NDN12_11420 PF00106 short chain dehydrogenase NDN12_11435 PF01037 Lrp/AsnC ligand binding domain NDN12_11440 PF00892 EamA-like transporter family NDN12_11445 PF07690 Major Facilitator Superfamily NDN12_11460 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_11460 PF04055 Radical SAM superfamily NDN12_11465 PF13193 AMP-binding enzyme C-terminal domain NDN12_11465 PF00501 AMP-binding enzyme NDN12_11470 PF00440 Bacterial regulatory proteins, tetR family NDN12_11475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_11475 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_11475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_11480 PF01039 Carboxyl transferase domain NDN12_11485 PF00378 Enoyl-CoA hydratase/isomerase NDN12_11490 PF00289 Biotin carboxylase, N-terminal domain NDN12_11490 PF02785 Biotin carboxylase C-terminal domain NDN12_11490 PF00364 Biotin-requiring enzyme NDN12_11490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_11490 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN12_11495 PF00682 HMGL-like NDN12_11500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_11500 PF03466 LysR substrate binding domain NDN12_11510 PF06224 Winged helix DNA-binding domain NDN12_11515 PF12833 Helix-turn-helix domain NDN12_11515 PF02311 AraC-like ligand binding domain NDN12_11520 PF07690 Major Facilitator Superfamily NDN12_11525 PF07690 Major Facilitator Superfamily NDN12_11545 PF07690 Major Facilitator Superfamily NDN12_11550 PF01638 HxlR-like helix-turn-helix NDN12_11565 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_11570 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_11575 PF00005 ABC transporter NDN12_11580 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_11585 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_11610 PF00324 Amino acid permease NDN12_11615 PF13742 OB-fold nucleic acid binding domain NDN12_11615 PF02601 Exonuclease VII, large subunit NDN12_11625 PF01323 DSBA-like thioredoxin domain NDN12_11630 PF00884 Sulfatase NDN12_11630 PF08019 Phosphoethanolamine transferase EptA/EptB NDN12_11635 PF02705 K+ potassium transporter NDN12_11650 PF01872 RibD C-terminal domain NDN12_11655 PF00813 FliP family NDN12_11665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NDN12_11675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_11675 PF00460 Flagella basal body rod protein NDN12_11675 PF07559 Flagellar basal body protein FlaE NDN12_11680 PF03963 Flagellar hook capping protein - N-terminal region NDN12_11695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_11695 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_11695 PF18269 T3SS EscN ATPase C-terminal domain NDN12_11710 PF01514 Secretory protein of YscJ/FliF family NDN12_11710 PF08345 Flagellar M-ring protein C-terminal NDN12_11715 PF02049 Flagellar hook-basal body complex protein FliE NDN12_11720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_11720 PF00460 Flagella basal body rod protein NDN12_11725 PF00460 Flagella basal body rod protein NDN12_11730 PF02119 Flagellar P-ring protein NDN12_11735 PF02107 Flagellar L-ring protein NDN12_11745 PF00460 Flagella basal body rod protein NDN12_11745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_11755 PF00771 FHIPEP family NDN12_11760 PF01312 FlhB HrpN YscU SpaS Family NDN12_11765 PF01311 Bacterial export proteins, family 1 NDN12_11770 PF01313 Bacterial export proteins, family 3 NDN12_11790 PF01476 LysM domain NDN12_11790 PF00756 Putative esterase NDN12_11800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_11800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_11805 PF00892 EamA-like transporter family NDN12_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_11810 PF03466 LysR substrate binding domain NDN12_11820 PF00764 Arginosuccinate synthase NDN12_11825 PF17954 Quercetinase C-terminal cupin domain NDN12_11825 PF02678 Pirin NDN12_11855 PF13559 Domain of unknown function (DUF4129) NDN12_11855 PF01841 Transglutaminase-like superfamily NDN12_11855 PF11992 Domain of unknown function (DUF3488) NDN12_11865 PF07726 ATPase family associated with various cellular activities (AAA) NDN12_11865 PF17863 AAA lid domain NDN12_11870 PF04328 Selenoprotein, putative NDN12_11875 PF02554 Carbon starvation protein CstA NDN12_11875 PF13722 5TM C-terminal transporter carbon starvation CstA NDN12_11880 PF09285 Elongation factor P, C-terminal NDN12_11880 PF01132 Elongation factor P (EF-P) OB domain NDN12_11880 PF08207 Elongation factor P (EF-P) KOW-like domain NDN12_11885 PF04055 Radical SAM superfamily NDN12_11900 PF01197 Ribosomal protein L31 NDN12_11905 PF13593 SBF-like CPA transporter family (DUF4137) NDN12_11910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_11915 PF07690 Major Facilitator Superfamily NDN12_11920 PF13654 AAA domain NDN12_11920 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN12_11925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_11925 PF03466 LysR substrate binding domain NDN12_11930 PF01551 Peptidase family M23 NDN12_11930 PF01476 LysM domain NDN12_11935 PF01975 Survival protein SurE NDN12_11955 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_11955 PF07943 Penicillin-binding protein 5, C-terminal domain NDN12_11960 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_11970 PF00293 NUDIX domain NDN12_11980 PF04356 Protein of unknown function (DUF489) NDN12_11985 PF08328 Adenylosuccinate lyase C-terminal NDN12_11985 PF00206 Lyase NDN12_12005 PF05257 CHAP domain NDN12_12005 PF01476 LysM domain NDN12_12015 PF00324 Amino acid permease NDN12_12020 PF04958 Arginine N-succinyltransferase beta subunit NDN12_12045 PF00069 Protein kinase domain NDN12_12045 PF03793 PASTA domain NDN12_12080 PF00892 EamA-like transporter family NDN12_12105 PF00814 Glycoprotease family NDN12_12110 PF01165 Ribosomal protein S21 NDN12_12115 PF09424 Yqey-like protein NDN12_12130 PF13302 Acetyltransferase (GNAT) domain NDN12_12135 PF01435 Peptidase family M48 NDN12_12140 PF01553 Acyltransferase NDN12_12145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_12145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_12155 PF12706 Beta-lactamase superfamily domain NDN12_12165 PF02525 Flavodoxin-like fold NDN12_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_12170 PF03466 LysR substrate binding domain NDN12_12175 PF00106 short chain dehydrogenase NDN12_12180 PF00106 short chain dehydrogenase NDN12_12185 PF12146 Serine aminopeptidase, S33 NDN12_12190 PF12146 Serine aminopeptidase, S33 NDN12_12195 PF12833 Helix-turn-helix domain NDN12_12195 PF06719 AraC-type transcriptional regulator N-terminus NDN12_12200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_12205 PF12833 Helix-turn-helix domain NDN12_12205 PF06719 AraC-type transcriptional regulator N-terminus NDN12_12210 PF11799 impB/mucB/samB family C-terminal domain NDN12_12210 PF13438 Domain of unknown function (DUF4113) NDN12_12210 PF00817 impB/mucB/samB family NDN12_12215 PF00717 Peptidase S24-like NDN12_12245 PF07715 TonB-dependent Receptor Plug Domain NDN12_12245 PF00593 TonB dependent receptor NDN12_12255 PF00364 Biotin-requiring enzyme NDN12_12255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_12255 PF02785 Biotin carboxylase C-terminal domain NDN12_12255 PF00289 Biotin carboxylase, N-terminal domain NDN12_12265 PF07286 Protein of unknown function (DUF1445) NDN12_12270 PF03746 LamB/YcsF family NDN12_12275 PF01566 Natural resistance-associated macrophage protein NDN12_12280 PF03466 LysR substrate binding domain NDN12_12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_12290 PF03471 Transporter associated domain NDN12_12290 PF03741 Integral membrane protein TerC family NDN12_12295 PF01624 MutS domain I NDN12_12295 PF05188 MutS domain II NDN12_12295 PF05192 MutS domain III NDN12_12295 PF05190 MutS family domain IV NDN12_12295 PF00488 MutS domain V NDN12_12305 PF11953 Domain of unknown function (DUF3470) NDN12_12305 PF00037 4Fe-4S binding domain NDN12_12315 PF01596 O-methyltransferase NDN12_12325 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_12330 PF01205 Uncharacterized protein family UPF0029 NDN12_12340 PF03412 Peptidase C39 family NDN12_12340 PF00005 ABC transporter NDN12_12340 PF00664 ABC transporter transmembrane region NDN12_12345 PF02321 Outer membrane efflux protein NDN12_12350 PF00005 ABC transporter NDN12_12350 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN12_12355 PF03968 OstA-like protein NDN12_12370 PF00571 CBS domain NDN12_12370 PF01380 SIS domain NDN12_12380 PF01406 tRNA synthetases class I (C) catalytic domain NDN12_12380 PF09190 DALR domain NDN12_12390 PF00444 Ribosomal protein L36 NDN12_12395 PF04170 NlpE N-terminal domain NDN12_12395 PF17185 NlpE C-terminal OB domain NDN12_12400 PF00889 Elongation factor TS NDN12_12405 PF00318 Ribosomal protein S2 NDN12_12410 PF00557 Metallopeptidase family M24 NDN12_12420 PF07690 Major Facilitator Superfamily NDN12_12440 PF13180 PDZ domain NDN12_12440 PF17820 PDZ domain NDN12_12445 PF01784 NIF3 (NGG1p interacting factor 3) NDN12_12450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN12_12450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN12_12455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN12_12455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN12_12460 PF00463 Isocitrate lyase family NDN12_12465 PF03466 LysR substrate binding domain NDN12_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_12470 PF03471 Transporter associated domain NDN12_12470 PF00571 CBS domain NDN12_12470 PF01595 Cyclin M transmembrane N-terminal domain NDN12_12475 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN12_12475 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN12_12495 PF00009 Elongation factor Tu GTP binding domain NDN12_12500 PF01507 Phosphoadenosine phosphosulfate reductase family NDN12_12505 PF14052 Capsule assembly protein Wzi NDN12_12515 PF00152 tRNA synthetases class II (D, K and N) NDN12_12515 PF01336 OB-fold nucleic acid binding domain NDN12_12525 PF00301 Rubredoxin NDN12_12530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_12530 PF18113 Rubredoxin binding C-terminal domain NDN12_12535 PF00561 alpha/beta hydrolase fold NDN12_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_12540 PF03466 LysR substrate binding domain NDN12_12545 PF01207 Dihydrouridine synthase (Dus) NDN12_12550 PF07759 Protein of unknown function (DUF1615) NDN12_12560 PF00696 Amino acid kinase family NDN12_12560 PF01472 PUA domain NDN12_12565 PF01018 GTP1/OBG NDN12_12565 PF01926 50S ribosome-binding GTPase NDN12_12585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN12_12585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN12_12600 PF02151 UvrB/uvrC motif NDN12_12600 PF04851 Type III restriction enzyme, res subunit NDN12_12600 PF12344 Ultra-violet resistance protein B NDN12_12600 PF17757 UvrB interaction domain NDN12_12600 PF00271 Helicase conserved C-terminal domain NDN12_12615 PF00155 Aminotransferase class I and II NDN12_12660 PF01040 UbiA prenyltransferase family NDN12_12665 PF04345 Chorismate lyase NDN12_12670 PF03951 Glutamine synthetase, beta-Grasp domain NDN12_12670 PF00120 Glutamine synthetase, catalytic domain NDN12_12675 PF00117 Glutamine amidotransferase class-I NDN12_12680 PF00375 Sodium:dicarboxylate symporter family NDN12_12690 PF00593 TonB dependent receptor NDN12_12690 PF07715 TonB-dependent Receptor Plug Domain NDN12_12695 PF00591 Glycosyl transferase family, a/b domain NDN12_12695 PF02885 Glycosyl transferase family, helical bundle domain NDN12_12700 PF00218 Indole-3-glycerol phosphate synthase NDN12_12715 PF01227 GTP cyclohydrolase I NDN12_12735 PF05675 Protein of unknown function (DUF817) NDN12_12740 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDN12_12750 PF00990 Diguanylate cyclase, GGDEF domain NDN12_12750 PF00563 EAL domain NDN12_12750 PF00360 Phytochrome region NDN12_12750 PF01590 GAF domain NDN12_12755 PF01979 Amidohydrolase family NDN12_12760 PF00929 Exonuclease NDN12_12770 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_12770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_12775 PF00005 ABC transporter NDN12_12775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_12780 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_12780 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_12785 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_12790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_12795 PF01476 LysM domain NDN12_12795 PF01464 Transglycosylase SLT domain NDN12_12800 PF00929 Exonuclease NDN12_12810 PF00293 NUDIX domain NDN12_12810 PF09297 NADH pyrophosphatase zinc ribbon domain NDN12_12830 PF04972 BON domain NDN12_12835 PF02021 Uncharacterised protein family UPF0102 NDN12_12845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN12_12855 PF13411 MerR HTH family regulatory protein NDN12_12865 PF01494 FAD binding domain NDN12_12870 PF01494 FAD binding domain NDN12_12880 PF05195 Aminopeptidase P, N-terminal domain NDN12_12880 PF00557 Metallopeptidase family M24 NDN12_12885 PF03695 Uncharacterised protein family (UPF0149) NDN12_12920 PF04355 SmpA / OmlA family NDN12_12920 PF00691 OmpA family NDN12_12925 PF13018 Extended Signal Peptide of Type V secretion system NDN12_12925 PF03895 YadA-like membrane anchor domain NDN12_12925 PF05658 Head domain of trimeric autotransporter adhesin NDN12_12925 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_12935 PF00691 OmpA family NDN12_12935 PF04355 SmpA / OmlA family NDN12_12940 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_12940 PF13018 Extended Signal Peptide of Type V secretion system NDN12_12940 PF05658 Head domain of trimeric autotransporter adhesin NDN12_12940 PF03895 YadA-like membrane anchor domain NDN12_12945 PF01812 5-formyltetrahydrofolate cyclo-ligase family NDN12_12950 PF02190 ATP-dependent protease La (LON) substrate-binding domain NDN12_12950 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN12_12950 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_12955 PF02590 Predicted SPOUT methyltransferase NDN12_12960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN12_12970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_12970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_12975 PF04060 Putative Fe-S cluster NDN12_12980 PF10576 Iron-sulfur binding domain of endonuclease III NDN12_12980 PF00633 Helix-hairpin-helix motif NDN12_12980 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN12_12990 PF05191 Adenylate kinase, active site lid NDN12_13005 PF03717 Penicillin-binding Protein dimerisation domain NDN12_13005 PF00905 Penicillin binding protein transpeptidase domain NDN12_13030 PF17961 Bacterial Ig domain NDN12_13030 PF00746 LPXTG cell wall anchor motif NDN12_13030 PF17210 SdrD B-like domain NDN12_13030 PF10425 C-terminus of bacterial fibrinogen-binding adhesin NDN12_13030 PF04650 YSIRK type signal peptide NDN12_13035 PF01343 Peptidase family S49 NDN12_13035 PF08496 Peptidase family S49 N-terminal NDN12_13040 PF00005 ABC transporter NDN12_13045 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_13050 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_13055 PF12849 PBP superfamily domain NDN12_13070 PF00324 Amino acid permease NDN12_13075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_13075 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_13075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_13080 PF01037 Lrp/AsnC ligand binding domain NDN12_13085 PF00171 Aldehyde dehydrogenase family NDN12_13090 PF00355 Rieske [2Fe-2S] domain NDN12_13095 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN12_13100 PF00202 Aminotransferase class-III NDN12_13110 PF07715 TonB-dependent Receptor Plug Domain NDN12_13110 PF07660 Secretin and TonB N terminus short domain NDN12_13110 PF00593 TonB dependent receptor NDN12_13115 PF07715 TonB-dependent Receptor Plug Domain NDN12_13115 PF07660 Secretin and TonB N terminus short domain NDN12_13115 PF00593 TonB dependent receptor NDN12_13135 PF00487 Fatty acid desaturase NDN12_13140 PF00175 Oxidoreductase NAD-binding domain NDN12_13140 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_13140 PF00970 Oxidoreductase FAD-binding domain NDN12_13145 PF00440 Bacterial regulatory proteins, tetR family NDN12_13155 PF00210 Ferritin-like domain NDN12_13160 PF18337 RapA N-terminal Tudor like domain NDN12_13160 PF12137 RNA polymerase recycling family C-terminal NDN12_13160 PF00176 SNF2 family N-terminal domain NDN12_13160 PF00271 Helicase conserved C-terminal domain NDN12_13160 PF18339 RapA N-terminal Tudor like domain 1 NDN12_13165 PF00849 RNA pseudouridylate synthase NDN12_13175 PF00202 Aminotransferase class-III NDN12_13180 PF02581 Thiamine monophosphate synthase NDN12_13190 PF01928 CYTH domain NDN12_13205 PF00675 Insulinase (Peptidase family M16) NDN12_13205 PF05193 Peptidase M16 inactive domain NDN12_13210 PF02567 Phenazine biosynthesis-like protein NDN12_13230 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_13235 PF00849 RNA pseudouridylate synthase NDN12_13245 PF03971 Monomeric isocitrate dehydrogenase NDN12_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_13250 PF00512 His Kinase A (phospho-acceptor) domain NDN12_13250 PF00672 HAMP domain NDN12_13255 PF00486 Transcriptional regulatory protein, C terminal NDN12_13255 PF00072 Response regulator receiver domain NDN12_13265 PF00576 HIUase/Transthyretin family NDN12_13275 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_13275 PF07943 Penicillin-binding protein 5, C-terminal domain NDN12_13280 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_13285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_13290 PF03441 FAD binding domain of DNA photolyase NDN12_13290 PF00875 DNA photolyase NDN12_13320 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN12_13335 PF03060 Nitronate monooxygenase NDN12_13340 PF13090 Polyphosphate kinase C-terminal domain 2 NDN12_13340 PF17941 Polyphosphate kinase C-terminal domain 1 NDN12_13340 PF13089 Polyphosphate kinase N-terminal domain NDN12_13340 PF02503 Polyphosphate kinase middle domain NDN12_13345 PF00912 Transglycosylase NDN12_13350 PF01694 Rhomboid family NDN12_13360 PF07715 TonB-dependent Receptor Plug Domain NDN12_13360 PF00593 TonB dependent receptor NDN12_13365 PF00486 Transcriptional regulatory protein, C terminal NDN12_13365 PF00072 Response regulator receiver domain NDN12_13370 PF11808 Phosphate regulon sensor protein PhoR NDN12_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_13370 PF00989 PAS fold NDN12_13370 PF00512 His Kinase A (phospho-acceptor) domain NDN12_13380 PF00005 ABC transporter NDN12_13385 PF13472 GDSL-like Lipase/Acylhydrolase family NDN12_13390 PF00583 Acetyltransferase (GNAT) family NDN12_13395 PF00484 Carbonic anhydrase NDN12_13400 PF00561 alpha/beta hydrolase fold NDN12_13410 PF07715 TonB-dependent Receptor Plug Domain NDN12_13410 PF00593 TonB dependent receptor NDN12_13415 PF01521 Iron-sulphur cluster biosynthesis NDN12_13415 PF01106 NifU-like domain NDN12_13425 PF00884 Sulfatase NDN12_13430 PF03781 Sulfatase-modifying factor enzyme 1 NDN12_13440 PF00152 tRNA synthetases class II (D, K and N) NDN12_13445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_13445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_13445 PF11890 Domain of unknown function (DUF3410) NDN12_13450 PF01219 Prokaryotic diacylglycerol kinase NDN12_13460 PF00118 TCP-1/cpn60 chaperonin family NDN12_13465 PF00166 Chaperonin 10 Kd subunit NDN12_13475 PF00781 Diacylglycerol kinase catalytic domain NDN12_13480 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NDN12_13480 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NDN12_13485 PF07660 Secretin and TonB N terminus short domain NDN12_13485 PF07715 TonB-dependent Receptor Plug Domain NDN12_13485 PF00593 TonB dependent receptor NDN12_13490 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDN12_13490 PF01266 FAD dependent oxidoreductase NDN12_13495 PF00455 DeoR C terminal sensor domain NDN12_13495 PF08220 DeoR-like helix-turn-helix domain NDN12_13500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDN12_13500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDN12_13510 PF14542 GCN5-related N-acetyl-transferase NDN12_13520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDN12_13520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDN12_13535 PF16655 PhoD-like phosphatase, N-terminal domain NDN12_13535 PF09423 PhoD-like phosphatase NDN12_13550 PF00535 Glycosyl transferase family 2 NDN12_13555 PF14883 Hypothetical glycosyl hydrolase family 13 NDN12_13555 PF01522 Polysaccharide deacetylase NDN12_13565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_13570 PF07152 YaeQ protein NDN12_13575 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN12_13575 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN12_13585 PF03061 Thioesterase superfamily NDN12_13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_13605 PF03466 LysR substrate binding domain NDN12_13615 PF01810 LysE type translocator NDN12_13645 PF03449 Transcription elongation factor, N-terminal NDN12_13645 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN12_13680 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_13680 PF01464 Transglycosylase SLT domain NDN12_13690 PF01171 PP-loop family NDN12_13695 PF01464 Transglycosylase SLT domain NDN12_13700 PF01435 Peptidase family M48 NDN12_13710 PF00571 CBS domain NDN12_13710 PF01769 Divalent cation transporter NDN12_13710 PF03448 MgtE intracellular N domain NDN12_13715 PF00873 AcrB/AcrD/AcrF family NDN12_13720 PF00884 Sulfatase NDN12_13725 PF03009 Glycerophosphoryl diester phosphodiesterase family NDN12_13740 PF00561 alpha/beta hydrolase fold NDN12_13750 PF13291 ACT domain NDN12_13750 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_13755 PF00092 von Willebrand factor type A domain NDN12_13755 PF12450 von Willebrand factor NDN12_13755 PF12034 Domain of unknown function (DUF3520) NDN12_13765 PF00809 Pterin binding enzyme NDN12_13770 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_13770 PF17862 AAA+ lid domain NDN12_13770 PF01434 Peptidase family M41 NDN12_13770 PF06480 FtsH Extracellular NDN12_13775 PF01728 FtsJ-like methyltransferase NDN12_13780 PF01985 CRS1 / YhbY (CRM) domain NDN12_13795 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN12_13795 PF00117 Glutamine amidotransferase class-I NDN12_13800 PF02142 MGS-like domain NDN12_13800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_13800 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NDN12_13805 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN12_13805 PF03449 Transcription elongation factor, N-terminal NDN12_13815 PF07660 Secretin and TonB N terminus short domain NDN12_13815 PF07715 TonB-dependent Receptor Plug Domain NDN12_13815 PF00593 TonB dependent receptor NDN12_13820 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_13825 PF00582 Universal stress protein family NDN12_13830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_13840 PF09587 Bacterial capsule synthesis protein PGA_cap NDN12_13855 PF00999 Sodium/hydrogen exchanger family NDN12_13860 PF04228 Putative neutral zinc metallopeptidase NDN12_13865 PF05661 Protein of unknown function (DUF808) NDN12_13870 PF00579 tRNA synthetases class I (W and Y) NDN12_13875 PF07290 Protein of unknown function (DUF1449) NDN12_13880 PF01145 SPFH domain / Band 7 family NDN12_13880 PF15975 Flotillin NDN12_13895 PF00549 CoA-ligase NDN12_13895 PF02629 CoA binding domain NDN12_13900 PF08442 ATP-grasp domain NDN12_13900 PF00549 CoA-ligase NDN12_13905 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_13905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_13910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN12_13910 PF00364 Biotin-requiring enzyme NDN12_13910 PF02817 e3 binding domain NDN12_13915 PF16078 2-oxoglutarate dehydrogenase N-terminus NDN12_13915 PF02779 Transketolase, pyrimidine binding domain NDN12_13915 PF16870 2-oxoglutarate dehydrogenase C-terminal NDN12_13915 PF00676 Dehydrogenase E1 component NDN12_13925 PF13085 2Fe-2S iron-sulfur cluster binding domain NDN12_13930 PF00890 FAD binding domain NDN12_13930 PF02910 Fumarate reductase flavoprotein C-term NDN12_13935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN12_13940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN12_13945 PF00285 Citrate synthase, C-terminal domain NDN12_13960 PF17773 UPF0176 acylphosphatase like domain NDN12_13960 PF00581 Rhodanese-like domain NDN12_13965 PF09335 SNARE associated Golgi protein NDN12_13970 PF03466 LysR substrate binding domain NDN12_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_13975 PF01810 LysE type translocator NDN12_13990 PF03979 Sigma-70 factor, region 1.1 NDN12_13990 PF04545 Sigma-70, region 4 NDN12_13990 PF04546 Sigma-70, non-essential region NDN12_13990 PF04539 Sigma-70 region 3 NDN12_13990 PF00140 Sigma-70 factor, region 1.2 NDN12_13990 PF04542 Sigma-70 region 2 NDN12_13995 PF04359 Protein of unknown function (DUF493) NDN12_14005 PF03099 Biotin/lipoate A/B protein ligase family NDN12_14015 PF00465 Iron-containing alcohol dehydrogenase NDN12_14020 PF13520 Amino acid permease NDN12_14025 PF03358 NADPH-dependent FMN reductase NDN12_14030 PF01638 HxlR-like helix-turn-helix NDN12_14040 PF00588 SpoU rRNA Methylase family NDN12_14045 PF10414 Sirohaem synthase dimerisation region NDN12_14045 PF14824 Sirohaem biosynthesis protein central NDN12_14045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN12_14050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_14050 PF02403 Seryl-tRNA synthetase N-terminal domain NDN12_14060 PF03548 Outer membrane lipoprotein carrier protein LolA NDN12_14065 PF02678 Pirin NDN12_14065 PF05726 Pirin C-terminal cupin domain NDN12_14070 PF01016 Ribosomal L27 protein NDN12_14075 PF00829 Ribosomal prokaryotic L21 protein NDN12_14080 PF00348 Polyprenyl synthetase NDN12_14090 PF01569 PAP2 superfamily NDN12_14095 PF00529 HlyD membrane-fusion protein of T1SS NDN12_14095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_14100 PF00873 AcrB/AcrD/AcrF family NDN12_14105 PF02321 Outer membrane efflux protein NDN12_14110 PF01906 Putative heavy-metal-binding NDN12_14115 PF01906 Putative heavy-metal-binding NDN12_14120 PF07690 Major Facilitator Superfamily NDN12_14145 PF08264 Anticodon-binding domain of tRNA NDN12_14145 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_14145 PF10458 Valyl tRNA synthetase tRNA binding arm NDN12_14155 PF01797 Transposase IS200 like NDN12_14185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_14185 PF03466 LysR substrate binding domain NDN12_14190 PF01144 Coenzyme A transferase NDN12_14195 PF01144 Coenzyme A transferase NDN12_14200 PF02667 Short chain fatty acid transporter NDN12_14205 PF00909 Ammonium Transporter Family NDN12_14210 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_14215 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_14220 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_14225 PF00005 ABC transporter NDN12_14240 PF08521 Two-component sensor kinase N-terminal NDN12_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_14240 PF00512 His Kinase A (phospho-acceptor) domain NDN12_14245 PF00072 Response regulator receiver domain NDN12_14245 PF00486 Transcriptional regulatory protein, C terminal NDN12_14250 PF00884 Sulfatase NDN12_14250 PF08019 Phosphoethanolamine transferase EptA/EptB NDN12_14270 PF01734 Patatin-like phospholipase NDN12_14280 PF01145 SPFH domain / Band 7 family NDN12_14285 PF04237 YjbR NDN12_14290 PF00348 Polyprenyl synthetase NDN12_14295 PF04303 PrpF protein NDN12_14300 PF00324 Amino acid permease NDN12_14310 PF00120 Glutamine synthetase, catalytic domain NDN12_14320 PF00593 TonB dependent receptor NDN12_14320 PF07715 TonB-dependent Receptor Plug Domain NDN12_14330 PF01569 PAP2 superfamily NDN12_14340 PF03600 Citrate transporter NDN12_14345 PF02311 AraC-like ligand binding domain NDN12_14345 PF12833 Helix-turn-helix domain NDN12_14350 PF00171 Aldehyde dehydrogenase family NDN12_14355 PF05643 Putative bacterial lipoprotein (DUF799) NDN12_14365 PF03783 Curli production assembly/transport component CsgG NDN12_14370 PF00072 Response regulator receiver domain NDN12_14370 PF00486 Transcriptional regulatory protein, C terminal NDN12_14375 PF00512 His Kinase A (phospho-acceptor) domain NDN12_14375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_14375 PF02702 Osmosensitive K+ channel His kinase sensor domain NDN12_14375 PF13493 Domain of unknown function (DUF4118) NDN12_14380 PF02669 K+-transporting ATPase, c chain NDN12_14390 PF03814 Potassium-transporting ATPase A subunit NDN12_14410 PF01507 Phosphoadenosine phosphosulfate reductase family NDN12_14415 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NDN12_14415 PF06974 Protein of unknown function (DUF1298) NDN12_14425 PF10150 Ribonuclease E/G family NDN12_14425 PF00575 S1 RNA binding domain NDN12_14430 PF02545 Maf-like protein NDN12_14440 PF04085 rod shape-determining protein MreC NDN12_14450 PF02686 Glu-tRNAGln amidotransferase C subunit NDN12_14455 PF01425 Amidase NDN12_14460 PF02934 GatB/GatE catalytic domain NDN12_14460 PF02637 GatB domain NDN12_14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_14495 PF03466 LysR substrate binding domain NDN12_14510 PF01431 Peptidase family M13 NDN12_14510 PF05649 Peptidase family M13 NDN12_14515 PF05992 SbmA/BacA-like family NDN12_14520 PF01734 Patatin-like phospholipase NDN12_14525 PF01235 Sodium:alanine symporter family NDN12_14530 PF03616 Sodium/glutamate symporter NDN12_14540 PF00881 Nitroreductase family NDN12_14545 PF07690 Major Facilitator Superfamily NDN12_14550 PF12805 FUSC-like inner membrane protein yccS NDN12_14560 PF00258 Flavodoxin NDN12_14560 PF00175 Oxidoreductase NAD-binding domain NDN12_14560 PF00667 FAD binding domain NDN12_14605 PF03734 L,D-transpeptidase catalytic domain NDN12_14605 PF17969 L,D-transpeptidase C-terminal domain NDN12_14610 PF04304 Protein of unknown function (DUF454) NDN12_14625 PF01546 Peptidase family M20/M25/M40 NDN12_14625 PF07687 Peptidase dimerisation domain NDN12_14635 PF00072 Response regulator receiver domain NDN12_14635 PF01627 Hpt domain NDN12_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_14635 PF01584 CheW-like domain NDN12_14640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDN12_14640 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDN12_14645 PF01584 CheW-like domain NDN12_14650 PF00072 Response regulator receiver domain NDN12_14655 PF00072 Response regulator receiver domain NDN12_14665 PF03129 Anticodon binding domain NDN12_14665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_14665 PF04073 Aminoacyl-tRNA editing domain NDN12_14670 PF07411 Domain of unknown function (DUF1508) NDN12_14675 PF03831 PhnA domain NDN12_14675 PF08274 PhnA Zinc-Ribbon NDN12_14680 PF04343 Protein of unknown function, DUF488 NDN12_14695 PF01571 Aminomethyltransferase folate-binding domain NDN12_14710 PF10411 Disulfide bond isomerase protein N-terminus NDN12_14710 PF13098 Thioredoxin-like domain NDN12_14720 PF07715 TonB-dependent Receptor Plug Domain NDN12_14720 PF00593 TonB dependent receptor NDN12_14725 PF06827 Zinc finger found in FPG and IleRS NDN12_14725 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDN12_14725 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDN12_14740 PF01741 Large-conductance mechanosensitive channel, MscL NDN12_14745 PF00009 Elongation factor Tu GTP binding domain NDN12_14745 PF00679 Elongation factor G C-terminus NDN12_14745 PF03144 Elongation factor Tu domain 2 NDN12_14750 PF00860 Permease family NDN12_14755 PF05175 Methyltransferase small domain NDN12_14755 PF08468 Methyltransferase small domain N-terminal NDN12_14760 PF00324 Amino acid permease NDN12_14765 PF01139 tRNA-splicing ligase RtcB NDN12_14775 PF13505 Outer membrane protein beta-barrel domain NDN12_14775 PF00691 OmpA family NDN12_14780 PF13505 Outer membrane protein beta-barrel domain NDN12_14780 PF00691 OmpA family NDN12_14790 PF02803 Thiolase, C-terminal domain NDN12_14790 PF00108 Thiolase, N-terminal domain NDN12_14800 PF00893 Small Multidrug Resistance protein NDN12_14810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_14810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_14815 PF01011 PQQ enzyme repeat NDN12_14820 PF04966 Carbohydrate-selective porin, OprB family NDN12_14825 PF02515 CoA-transferase family III NDN12_14830 PF12833 Helix-turn-helix domain NDN12_14830 PF02311 AraC-like ligand binding domain NDN12_14860 PF02803 Thiolase, C-terminal domain NDN12_14860 PF00108 Thiolase, N-terminal domain NDN12_14865 PF00378 Enoyl-CoA hydratase/isomerase NDN12_14865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_14865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_14885 PF13673 Acetyltransferase (GNAT) domain NDN12_14895 PF03006 Haemolysin-III related NDN12_14900 PF07690 Major Facilitator Superfamily NDN12_14900 PF00083 Sugar (and other) transporter NDN12_14915 PF02810 SEC-C motif NDN12_14915 PF07517 SecA DEAD-like domain NDN12_14915 PF01043 SecA preprotein cross-linking domain NDN12_14915 PF07516 SecA Wing and Scaffold domain NDN12_14920 PF00578 AhpC/TSA family NDN12_14920 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN12_14925 PF00753 Metallo-beta-lactamase superfamily NDN12_14945 PF08245 Mur ligase middle domain NDN12_14945 PF02875 Mur ligase family, glutamate ligase domain NDN12_14950 PF01039 Carboxyl transferase domain NDN12_14955 PF00290 Tryptophan synthase alpha chain NDN12_14985 PF00149 Calcineurin-like phosphoesterase NDN12_14995 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_15000 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDN12_15005 PF07715 TonB-dependent Receptor Plug Domain NDN12_15005 PF00593 TonB dependent receptor NDN12_15010 PF01923 Cobalamin adenosyltransferase NDN12_15030 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDN12_15040 PF00486 Transcriptional regulatory protein, C terminal NDN12_15040 PF00072 Response regulator receiver domain NDN12_15045 PF00672 HAMP domain NDN12_15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_15045 PF00512 His Kinase A (phospho-acceptor) domain NDN12_15055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_15055 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_15055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_15055 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_15060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_15060 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_15060 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_15060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_15070 PF06146 Phosphate-starvation-inducible E NDN12_15100 PF00593 TonB dependent receptor NDN12_15100 PF07715 TonB-dependent Receptor Plug Domain NDN12_15110 PF01336 OB-fold nucleic acid binding domain NDN12_15110 PF00152 tRNA synthetases class II (D, K and N) NDN12_15110 PF02938 GAD domain NDN12_15135 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN12_15140 PF01501 Glycosyl transferase family 8 NDN12_15140 PF00535 Glycosyl transferase family 2 NDN12_15145 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN12_15160 PF17101 Stealth protein CR1, conserved region 1 NDN12_15160 PF11380 Stealth protein CR2, conserved region 2 NDN12_15170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_15170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_15175 PF01370 NAD dependent epimerase/dehydratase family NDN12_15185 PF01063 Amino-transferase class IV NDN12_15190 PF08335 GlnD PII-uridylyltransferase NDN12_15190 PF03710 Glutamate-ammonia ligase adenylyltransferase NDN12_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_15195 PF00512 His Kinase A (phospho-acceptor) domain NDN12_15195 PF00989 PAS fold NDN12_15195 PF16736 Single Cache-like NDN12_15220 PF02547 Queuosine biosynthesis protein NDN12_15235 PF01702 Queuine tRNA-ribosyltransferase NDN12_15240 PF02699 Preprotein translocase subunit NDN12_15245 PF02355 Protein export membrane protein NDN12_15245 PF07549 SecD/SecF GG Motif NDN12_15245 PF13721 SecD export protein N-terminal TM region NDN12_15250 PF02355 Protein export membrane protein NDN12_15250 PF07549 SecD/SecF GG Motif NDN12_15260 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDN12_15260 PF01926 50S ribosome-binding GTPase NDN12_15265 PF13360 PQQ-like domain NDN12_15275 PF03129 Anticodon binding domain NDN12_15275 PF13393 Histidyl-tRNA synthetase NDN12_15280 PF04551 GcpE protein NDN12_15295 PF04055 Radical SAM superfamily NDN12_15300 PF00334 Nucleoside diphosphate kinase NDN12_15305 PF04384 Iron-sulphur cluster assembly NDN12_15310 PF01569 PAP2 superfamily NDN12_15315 PF13439 Glycosyltransferase Family 4 NDN12_15315 PF00534 Glycosyl transferases group 1 NDN12_15320 PF00149 Calcineurin-like phosphoesterase NDN12_15325 PF00398 Ribosomal RNA adenine dimethylase NDN12_15330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDN12_15340 PF00572 Ribosomal protein L13 NDN12_15345 PF00380 Ribosomal protein S9/S16 NDN12_15355 PF02798 Glutathione S-transferase, N-terminal domain NDN12_15355 PF00043 Glutathione S-transferase, C-terminal domain NDN12_15360 PF04386 Stringent starvation protein B NDN12_15390 PF03372 Endonuclease/Exonuclease/phosphatase family NDN12_15415 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN12_15415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_15415 PF00364 Biotin-requiring enzyme NDN12_15415 PF00289 Biotin carboxylase, N-terminal domain NDN12_15415 PF02785 Biotin carboxylase C-terminal domain NDN12_15425 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_15425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_15425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_15430 PF01039 Carboxyl transferase domain NDN12_15445 PF00440 Bacterial regulatory proteins, tetR family NDN12_15445 PF17932 Tetracyclin repressor-like, C-terminal domain NDN12_15450 PF13302 Acetyltransferase (GNAT) domain NDN12_15460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_15460 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_15460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_15515 PF01066 CDP-alcohol phosphatidyltransferase NDN12_15520 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDN12_15540 PF00056 lactate/malate dehydrogenase, NAD binding domain NDN12_15540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDN12_15550 PF01551 Peptidase family M23 NDN12_15550 PF10145 Phage-related minor tail protein NDN12_15550 PF01464 Transglycosylase SLT domain NDN12_15555 PF00919 Uncharacterized protein family UPF0004 NDN12_15555 PF04055 Radical SAM superfamily NDN12_15555 PF01938 TRAM domain NDN12_15560 PF02562 PhoH-like protein NDN12_15565 PF02130 Uncharacterized protein family UPF0054 NDN12_15595 PF09234 Domain of unknown function (DUF1963) NDN12_15600 PF00303 Thymidylate synthase NDN12_15605 PF00186 Dihydrofolate reductase NDN12_15620 PF01625 Peptide methionine sulfoxide reductase NDN12_15630 PF01618 MotA/TolQ/ExbB proton channel family NDN12_15640 PF01842 ACT domain NDN12_15640 PF00551 Formyl transferase NDN12_15645 PF08360 QacR-like protein, C-terminal region NDN12_15645 PF00440 Bacterial regulatory proteins, tetR family NDN12_15650 PF00171 Aldehyde dehydrogenase family NDN12_15655 PF00830 Ribosomal L28 family NDN12_15660 PF00471 Ribosomal protein L33 NDN12_15665 PF00999 Sodium/hydrogen exchanger family NDN12_15665 PF02254 TrkA-N domain NDN12_15695 PF00580 UvrD/REP helicase N-terminal domain NDN12_15695 PF13361 UvrD-like helicase C-terminal domain NDN12_15710 PF01396 Topoisomerase DNA binding C4 zinc finger NDN12_15710 PF08272 Topoisomerase I zinc-ribbon-like NDN12_15710 PF01751 Toprim domain NDN12_15710 PF01131 DNA topoisomerase NDN12_15720 PF01638 HxlR-like helix-turn-helix NDN12_15725 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_15725 PF00107 Zinc-binding dehydrogenase NDN12_15730 PF04102 SlyX NDN12_15735 PF00005 ABC transporter NDN12_15735 PF16326 ABC transporter C-terminal domain NDN12_15735 PF12848 ABC transporter NDN12_15740 PF01661 Macro domain NDN12_15745 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN12_15775 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN12_15775 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN12_15795 PF01416 tRNA pseudouridine synthase NDN12_15805 PF01176 Translation initiation factor 1A / IF-1 NDN12_15820 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_15830 PF00694 Aconitase C-terminal domain NDN12_15835 PF00330 Aconitase family (aconitate hydratase) NDN12_15845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_15845 PF03466 LysR substrate binding domain NDN12_15865 PF00293 NUDIX domain NDN12_15870 PF01590 GAF domain NDN12_15870 PF05524 PEP-utilising enzyme, N-terminal NDN12_15870 PF00391 PEP-utilising enzyme, mobile domain NDN12_15870 PF02896 PEP-utilising enzyme, TIM barrel domain NDN12_15880 PF06628 Catalase-related immune-responsive NDN12_15880 PF00199 Catalase NDN12_15895 PF12706 Beta-lactamase superfamily domain NDN12_15900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_15900 PF03466 LysR substrate binding domain NDN12_15905 PF02798 Glutathione S-transferase, N-terminal domain NDN12_15915 PF13419 Haloacid dehalogenase-like hydrolase NDN12_15920 PF00849 RNA pseudouridylate synthase NDN12_15920 PF01479 S4 domain NDN12_15930 PF12111 Polyribonucleotide phosphorylase C terminal NDN12_15930 PF10150 Ribonuclease E/G family NDN12_15930 PF00575 S1 RNA binding domain NDN12_15935 PF00501 AMP-binding enzyme NDN12_15935 PF13193 AMP-binding enzyme C-terminal domain NDN12_15950 PF06969 HemN C-terminal domain NDN12_15950 PF04055 Radical SAM superfamily NDN12_15960 PF01554 MatE NDN12_15965 PF03109 ABC1 family NDN12_15970 PF01197 Ribosomal protein L31 NDN12_15980 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDN12_15995 PF01613 Flavin reductase like domain NDN12_16010 PF13247 4Fe-4S dicluster domain NDN12_16010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN12_16010 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_16020 PF03884 DNA gyrase inhibitor YacG NDN12_16030 PF00753 Metallo-beta-lactamase superfamily NDN12_16035 PF00762 Ferrochelatase NDN12_16045 PF01177 Asp/Glu/Hydantoin racemase NDN12_16060 PF01206 Sulfurtransferase TusA NDN12_16065 PF03471 Transporter associated domain NDN12_16065 PF00571 CBS domain NDN12_16070 PF00795 Carbon-nitrogen hydrolase NDN12_16075 PF01588 Putative tRNA binding domain NDN12_16090 PF08334 Type II secretion system (T2SS), protein G NDN12_16090 PF07963 Prokaryotic N-terminal methylation motif NDN12_16095 PF00482 Type II secretion system (T2SS), protein F NDN12_16100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDN12_16100 PF18074 Primosomal protein N C-terminal domain NDN12_16100 PF17764 3′ DNA-binding domain (3′BD) NDN12_16100 PF00270 DEAD/DEAH box helicase NDN12_16100 PF00271 Helicase conserved C-terminal domain NDN12_16105 PF00999 Sodium/hydrogen exchanger family NDN12_16105 PF02254 TrkA-N domain NDN12_16110 PF01430 Hsp33 protein NDN12_16125 PF00226 DnaJ domain NDN12_16125 PF01556 DnaJ C terminal domain NDN12_16135 PF01544 CorA-like Mg2+ transporter protein NDN12_16140 PF00375 Sodium:dicarboxylate symporter family NDN12_16145 PF00013 KH domain NDN12_16145 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDN12_16145 PF03725 3' exoribonuclease family, domain 2 NDN12_16145 PF00575 S1 RNA binding domain NDN12_16145 PF01138 3' exoribonuclease family, domain 1 NDN12_16150 PF00312 Ribosomal protein S15 NDN12_16155 PF00144 Beta-lactamase NDN12_16160 PF13538 UvrD-like helicase C-terminal domain NDN12_16165 PF00580 UvrD/REP helicase N-terminal domain NDN12_16165 PF12705 PD-(D/E)XK nuclease superfamily NDN12_16165 PF13361 UvrD-like helicase C-terminal domain NDN12_16170 PF17946 RecC C-terminal domain NDN12_16180 PF07690 Major Facilitator Superfamily NDN12_16185 PF03976 Polyphosphate kinase 2 (PPK2) NDN12_16195 PF01209 ubiE/COQ5 methyltransferase family NDN12_16205 PF03109 ABC1 family NDN12_16210 PF01494 FAD binding domain NDN12_16215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_16225 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN12_16240 PF13244 Domain of unknown function (DUF4040) NDN12_16240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDN12_16240 PF00361 Proton-conducting membrane transporter NDN12_16240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN12_16245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN12_16250 PF00361 Proton-conducting membrane transporter NDN12_16255 PF01899 Na+/H+ ion antiporter subunit NDN12_16260 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDN12_16265 PF03334 Na+/H+ antiporter subunit NDN12_16275 PF02033 Ribosome-binding factor A NDN12_16280 PF04760 Translation initiation factor IF-2, N-terminal region NDN12_16280 PF08364 Bacterial translation initiation factor IF-2 associated region NDN12_16280 PF11987 Translation-initiation factor 2 NDN12_16280 PF00009 Elongation factor Tu GTP binding domain NDN12_16285 PF13184 NusA-like KH domain NDN12_16285 PF00575 S1 RNA binding domain NDN12_16285 PF08529 NusA N-terminal domain NDN12_16290 PF17384 RimP C-terminal SH3 domain NDN12_16290 PF02576 RimP N-terminal domain NDN12_16310 PF03840 Preprotein translocase SecG subunit NDN12_16315 PF00121 Triosephosphate isomerase NDN12_16320 PF00437 Type II/IV secretion system protein NDN12_16320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN12_16325 PF00482 Type II secretion system (T2SS), protein F NDN12_16330 PF06750 Bacterial Peptidase A24 N-terminal domain NDN12_16330 PF01478 Type IV leader peptidase family NDN12_16335 PF01121 Dephospho-CoA kinase NDN12_16345 PF00588 SpoU rRNA Methylase family NDN12_16345 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN12_16350 PF06865 Pyrimidine/purine nucleoside phosphorylase NDN12_16355 PF02463 RecF/RecN/SMC N terminal domain NDN12_16360 PF02622 Uncharacterized ACR, COG1678 NDN12_16365 PF03652 Holliday junction resolvase NDN12_16370 PF13533 Biotin-lipoyl like NDN12_16395 PF01066 CDP-alcohol phosphatidyltransferase NDN12_16405 PF01541 GIY-YIG catalytic domain NDN12_16405 PF02151 UvrB/uvrC motif NDN12_16405 PF08459 UvrC Helix-hairpin-helix N-terminal NDN12_16420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_16420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_16420 PF00378 Enoyl-CoA hydratase/isomerase NDN12_16425 PF02803 Thiolase, C-terminal domain NDN12_16425 PF00108 Thiolase, N-terminal domain NDN12_16440 PF00376 MerR family regulatory protein NDN12_16440 PF09278 MerR, DNA binding NDN12_16450 PF00005 ABC transporter NDN12_16450 PF00664 ABC transporter transmembrane region NDN12_16460 PF01323 DSBA-like thioredoxin domain NDN12_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_16480 PF00183 Hsp90 protein NDN12_16495 PF13726 Na+-H+ antiporter family NDN12_16495 PF03553 Na+/H+ antiporter family NDN12_16520 PF04997 RNA polymerase Rpb1, domain 1 NDN12_16520 PF04983 RNA polymerase Rpb1, domain 3 NDN12_16520 PF05000 RNA polymerase Rpb1, domain 4 NDN12_16520 PF04998 RNA polymerase Rpb1, domain 5 NDN12_16520 PF00623 RNA polymerase Rpb1, domain 2 NDN12_16525 PF04561 RNA polymerase Rpb2, domain 2 NDN12_16525 PF04565 RNA polymerase Rpb2, domain 3 NDN12_16525 PF10385 RNA polymerase beta subunit external 1 domain NDN12_16525 PF00562 RNA polymerase Rpb2, domain 6 NDN12_16525 PF04560 RNA polymerase Rpb2, domain 7 NDN12_16525 PF04563 RNA polymerase beta subunit NDN12_16530 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN12_16530 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN12_16535 PF00466 Ribosomal protein L10 NDN12_16540 PF00687 Ribosomal protein L1p/L10e family NDN12_16545 PF00298 Ribosomal protein L11, RNA binding domain NDN12_16545 PF03946 Ribosomal protein L11, N-terminal domain NDN12_16550 PF02357 Transcription termination factor nusG NDN12_16550 PF00467 KOW motif NDN12_16555 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDN12_16565 PF03143 Elongation factor Tu C-terminal domain NDN12_16565 PF00009 Elongation factor Tu GTP binding domain NDN12_16565 PF03144 Elongation factor Tu domain 2 NDN12_16590 PF00425 chorismate binding enzyme NDN12_16590 PF04715 Anthranilate synthase component I, N terminal region NDN12_16595 PF13419 Haloacid dehalogenase-like hydrolase NDN12_16600 PF12401 Protein of unknown function (DUF2662) NDN12_16600 PF00498 FHA domain NDN12_16605 PF00263 Bacterial type II and III secretion system protein NDN12_16605 PF03958 Bacterial type II/III secretion system short domain NDN12_16620 PF00816 H-NS histone family NDN12_16645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDN12_16645 PF03900 Porphobilinogen deaminase, C-terminal domain NDN12_16650 PF00072 Response regulator receiver domain NDN12_16650 PF04397 LytTr DNA-binding domain NDN12_16655 PF07694 5TMR of 5TMR-LYT NDN12_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_16655 PF06580 Histidine kinase NDN12_16660 PF00206 Lyase NDN12_16660 PF14698 Argininosuccinate lyase C-terminal NDN12_16665 PF04362 Bacterial Fe(2+) trafficking NDN12_16670 PF01895 PhoU domain NDN12_16675 PF13667 ThiC-associated domain NDN12_16675 PF01964 Radical SAM ThiC family NDN12_16680 PF00293 NUDIX domain NDN12_16685 PF00149 Calcineurin-like phosphoesterase NDN12_16690 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDN12_16695 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_16700 PF01098 Cell cycle protein NDN12_16705 PF02875 Mur ligase family, glutamate ligase domain NDN12_16705 PF08245 Mur ligase middle domain NDN12_16720 PF07664 Ferrous iron transport protein B C terminus NDN12_16720 PF02421 Ferrous iron transport protein B NDN12_16720 PF07670 Nucleoside recognition NDN12_16730 PF02899 Phage integrase, N-terminal SAM-like domain NDN12_16730 PF00589 Phage integrase family NDN12_16735 PF10411 Disulfide bond isomerase protein N-terminus NDN12_16735 PF13098 Thioredoxin-like domain NDN12_16740 PF01842 ACT domain NDN12_16740 PF00742 Homoserine dehydrogenase NDN12_16740 PF03447 Homoserine dehydrogenase, NAD binding domain NDN12_16745 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_16760 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_16765 PF00072 Response regulator receiver domain NDN12_16765 PF00196 Bacterial regulatory proteins, luxR family NDN12_16770 PF00512 His Kinase A (phospho-acceptor) domain NDN12_16770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_16775 PF02954 Bacterial regulatory protein, Fis family NDN12_16775 PF00072 Response regulator receiver domain NDN12_16775 PF00158 Sigma-54 interaction domain NDN12_16780 PF03572 Peptidase family S41 NDN12_16780 PF01471 Putative peptidoglycan binding domain NDN12_16780 PF17820 PDZ domain NDN12_16785 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NDN12_16785 PF01676 Metalloenzyme superfamily NDN12_16790 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN12_16795 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN12_16800 PF00883 Cytosol aminopeptidase family, catalytic domain NDN12_16800 PF02789 Cytosol aminopeptidase family, N-terminal domain NDN12_16815 PF00677 Lumazine binding domain NDN12_16820 PF00230 Major intrinsic protein NDN12_16830 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN12_16830 PF01872 RibD C-terminal domain NDN12_16835 PF03477 ATP cone domain NDN12_16840 PF00909 Ammonium Transporter Family NDN12_16845 PF00543 Nitrogen regulatory protein P-II NDN12_16855 PF01078 Magnesium chelatase, subunit ChlI NDN12_16855 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDN12_16865 PF01925 Sulfite exporter TauE/SafE NDN12_16880 PF00719 Inorganic pyrophosphatase NDN12_16895 PF00501 AMP-binding enzyme NDN12_16895 PF13193 AMP-binding enzyme C-terminal domain NDN12_16900 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN12_16900 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN12_16905 PF03458 UPF0126 domain NDN12_16910 PF02810 SEC-C motif NDN12_16915 PF03471 Transporter associated domain NDN12_16915 PF03741 Integral membrane protein TerC family NDN12_16920 PF03641 Possible lysine decarboxylase NDN12_16930 PF07690 Major Facilitator Superfamily NDN12_16945 PF11798 IMS family HHH motif NDN12_16945 PF11799 impB/mucB/samB family C-terminal domain NDN12_16945 PF00817 impB/mucB/samB family NDN12_16950 PF00486 Transcriptional regulatory protein, C terminal NDN12_16950 PF00072 Response regulator receiver domain NDN12_16955 PF00512 His Kinase A (phospho-acceptor) domain NDN12_16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_16955 PF00672 HAMP domain NDN12_16960 PF06123 Inner membrane protein CreD NDN12_16980 PF08497 Radical SAM N-terminal NDN12_16980 PF04055 Radical SAM superfamily NDN12_16980 PF11842 Domain of unknown function (DUF3362) NDN12_16990 PF00593 TonB dependent receptor NDN12_16990 PF07715 TonB-dependent Receptor Plug Domain NDN12_16995 PF07690 Major Facilitator Superfamily NDN12_17005 PF13411 MerR HTH family regulatory protein NDN12_17015 PF03358 NADPH-dependent FMN reductase NDN12_17035 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_17070 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_17075 PF02515 CoA-transferase family III NDN12_17080 PF07690 Major Facilitator Superfamily NDN12_17085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_17085 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_17085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_17090 PF03466 LysR substrate binding domain NDN12_17110 PF00474 Sodium:solute symporter family NDN12_17115 PF04341 Protein of unknown function, DUF485 NDN12_17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_17120 PF09456 RcsC Alpha-Beta-Loop (ABL) NDN12_17120 PF00072 Response regulator receiver domain NDN12_17120 PF00512 His Kinase A (phospho-acceptor) domain NDN12_17140 PF01327 Polypeptide deformylase NDN12_17145 PF01476 LysM domain NDN12_17150 PF17782 DprA winged helix domain NDN12_17150 PF02481 DNA recombination-mediator protein A NDN12_17155 PF01300 Telomere recombination NDN12_17165 PF00440 Bacterial regulatory proteins, tetR family NDN12_17170 PF07690 Major Facilitator Superfamily NDN12_17175 PF07690 Major Facilitator Superfamily NDN12_17185 PF00255 Glutathione peroxidase NDN12_17200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDN12_17205 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_17205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_17210 PF00231 ATP synthase NDN12_17215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_17215 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_17215 PF00306 ATP synthase alpha/beta chain, C terminal domain NDN12_17220 PF00213 ATP synthase delta (OSCP) subunit NDN12_17225 PF00430 ATP synthase B/B' CF(0) NDN12_17230 PF00137 ATP synthase subunit C NDN12_17235 PF00119 ATP synthase A chain NDN12_17255 PF00005 ABC transporter NDN12_17260 PF00950 ABC 3 transport family NDN12_17265 PF01810 LysE type translocator NDN12_17270 PF04261 Dyp-type peroxidase family NDN12_17275 PF00750 tRNA synthetases class I (R) NDN12_17275 PF05746 DALR anticodon binding domain NDN12_17275 PF03485 Arginyl tRNA synthetase N terminal domain NDN12_17295 PF05726 Pirin C-terminal cupin domain NDN12_17295 PF02678 Pirin NDN12_17310 PF01475 Ferric uptake regulator family NDN12_17315 PF03551 Transcriptional regulator PadR-like family NDN12_17325 PF02540 NAD synthase NDN12_17325 PF00958 GMP synthase C terminal domain NDN12_17325 PF00117 Glutamine amidotransferase class-I NDN12_17330 PF04286 Protein of unknown function (DUF445) NDN12_17335 PF04076 Bacterial OB fold (BOF) protein NDN12_17340 PF07681 DoxX NDN12_17345 PF09335 SNARE associated Golgi protein NDN12_17360 PF13614 AAA domain NDN12_17370 PF01722 BolA-like protein NDN12_17385 PF07690 Major Facilitator Superfamily NDN12_17385 PF00083 Sugar (and other) transporter NDN12_17395 PF00378 Enoyl-CoA hydratase/isomerase NDN12_17400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_17400 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_17400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_17405 PF00501 AMP-binding enzyme NDN12_17405 PF13193 AMP-binding enzyme C-terminal domain NDN12_17410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_17410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_17415 PF00171 Aldehyde dehydrogenase family NDN12_17420 PF03466 LysR substrate binding domain NDN12_17420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_17425 PF00324 Amino acid permease NDN12_17430 PF01042 Endoribonuclease L-PSP NDN12_17435 PF01168 Alanine racemase, N-terminal domain NDN12_17435 PF00842 Alanine racemase, C-terminal domain NDN12_17440 PF01266 FAD dependent oxidoreductase NDN12_17445 PF01037 Lrp/AsnC ligand binding domain NDN12_17455 PF00583 Acetyltransferase (GNAT) family NDN12_17460 PF00849 RNA pseudouridylate synthase NDN12_17500 PF00694 Aconitase C-terminal domain NDN12_17500 PF00330 Aconitase family (aconitate hydratase) NDN12_17505 PF00285 Citrate synthase, C-terminal domain NDN12_17515 PF00392 Bacterial regulatory proteins, gntR family NDN12_17515 PF07729 FCD domain NDN12_17520 PF00155 Aminotransferase class I and II NDN12_17525 PF01565 FAD binding domain NDN12_17525 PF09330 D-lactate dehydrogenase, membrane binding NDN12_17530 PF01070 FMN-dependent dehydrogenase NDN12_17535 PF07729 FCD domain NDN12_17535 PF00392 Bacterial regulatory proteins, gntR family NDN12_17540 PF02652 L-lactate permease NDN12_17545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_17545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_17545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_17545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_17550 PF16363 GDP-mannose 4,6 dehydratase NDN12_17555 PF00342 Phosphoglucose isomerase NDN12_17560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_17560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_17560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN12_17565 PF00483 Nucleotidyl transferase NDN12_17570 PF02719 Polysaccharide biosynthesis protein NDN12_17575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN12_17580 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_17580 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_17580 PF17836 PglD N-terminal domain NDN12_17585 PF02397 Bacterial sugar transferase NDN12_17615 PF00534 Glycosyl transferases group 1 NDN12_17615 PF13439 Glycosyltransferase Family 4 NDN12_17620 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN12_17625 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_17630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDN12_17630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NDN12_17635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_17635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN12_17635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_17640 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN12_17645 PF02563 Polysaccharide biosynthesis/export protein NDN12_17645 PF10531 SLBB domain NDN12_17645 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NDN12_17650 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN12_17655 PF02706 Chain length determinant protein NDN12_17655 PF13807 G-rich domain on putative tyrosine kinase NDN12_17655 PF13614 AAA domain NDN12_17660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN12_17660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_17665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN12_17665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_17670 PF01757 Acyltransferase family NDN12_17670 PF01168 Alanine racemase, N-terminal domain NDN12_17670 PF00842 Alanine racemase, C-terminal domain NDN12_17675 PF03023 Lipid II flippase MurJ NDN12_17680 PF01510 N-acetylmuramoyl-L-alanine amidase NDN12_17685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NDN12_17685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NDN12_17700 PF05506 Domain of unknown function (DUF756) NDN12_17700 PF04185 Phosphoesterase family NDN12_17705 PF03725 3' exoribonuclease family, domain 2 NDN12_17705 PF01138 3' exoribonuclease family, domain 1 NDN12_17710 PF00487 Fatty acid desaturase NDN12_17715 PF00175 Oxidoreductase NAD-binding domain NDN12_17720 PF00440 Bacterial regulatory proteins, tetR family NDN12_17725 PF08360 QacR-like protein, C-terminal region NDN12_17725 PF00440 Bacterial regulatory proteins, tetR family NDN12_17730 PF01323 DSBA-like thioredoxin domain NDN12_17740 PF13419 Haloacid dehalogenase-like hydrolase NDN12_17745 PF00106 short chain dehydrogenase NDN12_17755 PF00583 Acetyltransferase (GNAT) family NDN12_17755 PF00696 Amino acid kinase family NDN12_17760 PF09084 NMT1/THI5 like NDN12_17765 PF09084 NMT1/THI5 like NDN12_17770 PF00296 Luciferase-like monooxygenase NDN12_17775 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_17780 PF00005 ABC transporter NDN12_17785 PF17938 Tetracyclin repressor-like, C-terminal domain NDN12_17785 PF00440 Bacterial regulatory proteins, tetR family NDN12_17810 PF01048 Phosphorylase superfamily NDN12_17820 PF01687 Riboflavin kinase NDN12_17820 PF06574 FAD synthetase NDN12_17825 PF06827 Zinc finger found in FPG and IleRS NDN12_17825 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_17825 PF08264 Anticodon-binding domain of tRNA NDN12_17830 PF01252 Signal peptidase (SPase) II NDN12_17835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_17845 PF02463 RecF/RecN/SMC N terminal domain NDN12_17880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN12_17885 PF07859 alpha/beta hydrolase fold NDN12_17900 PF03466 LysR substrate binding domain NDN12_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_17905 PF01025 GrpE NDN12_17910 PF00012 Hsp70 protein NDN12_17915 PF12706 Beta-lactamase superfamily domain NDN12_17945 PF13406 Transglycosylase SLT domain NDN12_17950 PF02222 ATP-grasp domain NDN12_17950 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDN12_17955 PF00731 AIR carboxylase NDN12_17965 PF01225 Mur ligase family, catalytic domain NDN12_17965 PF02875 Mur ligase family, glutamate ligase domain NDN12_17965 PF08245 Mur ligase middle domain NDN12_17970 PF00106 short chain dehydrogenase NDN12_17985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_17985 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_17985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_17990 PF03466 LysR substrate binding domain NDN12_18000 PF03741 Integral membrane protein TerC family NDN12_18015 PF03738 Glutathionylspermidine synthase preATP-grasp NDN12_18035 PF01979 Amidohydrolase family NDN12_18040 PF00156 Phosphoribosyl transferase domain NDN12_18045 PF04226 Transglycosylase associated protein NDN12_18050 PF13098 Thioredoxin-like domain NDN12_18050 PF10411 Disulfide bond isomerase protein N-terminus NDN12_18055 PF00437 Type II/IV secretion system protein NDN12_18065 PF01926 50S ribosome-binding GTPase NDN12_18065 PF12631 MnmE helical domain NDN12_18065 PF10396 GTP-binding protein TrmE N-terminus NDN12_18070 PF02096 60Kd inner membrane protein NDN12_18070 PF14849 YidC periplasmic domain NDN12_18075 PF01809 Putative membrane protein insertion efficiency factor NDN12_18080 PF00825 Ribonuclease P NDN12_18085 PF00468 Ribosomal protein L34