locus-tag class description NDN11_00005 PF00308 Bacterial dnaA protein NDN11_00005 PF08299 Bacterial dnaA protein helix-turn-helix NDN11_00005 PF11638 DnaA N-terminal domain NDN11_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NDN11_00010 PF02767 DNA polymerase III beta subunit, central domain NDN11_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NDN11_00015 PF02463 RecF/RecN/SMC N terminal domain NDN11_00020 PF00204 DNA gyrase B NDN11_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NDN11_00020 PF18053 DNA gyrase B subunit insert domain NDN11_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_00020 PF01751 Toprim domain NDN11_00035 PF09335 SNARE associated Golgi protein NDN11_00040 PF00005 ABC transporter NDN11_00040 PF12848 ABC transporter NDN11_00065 PF01521 Iron-sulphur cluster biosynthesis NDN11_00070 PF03702 Anhydro-N-acetylmuramic acid kinase NDN11_00075 PF00579 tRNA synthetases class I (W and Y) NDN11_00130 PF00171 Aldehyde dehydrogenase family NDN11_00135 PF00209 Sodium:neurotransmitter symporter family NDN11_00145 PF01189 16S rRNA methyltransferase RsmB/F NDN11_00145 PF01029 NusB family NDN11_00150 PF02911 Formyl transferase, C-terminal domain NDN11_00150 PF00551 Formyl transferase NDN11_00155 PF00920 Dehydratase family NDN11_00170 PF03466 LysR substrate binding domain NDN11_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_00175 PF03466 LysR substrate binding domain NDN11_00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_00185 PF00860 Permease family NDN11_00190 PF00311 Phosphoenolpyruvate carboxylase NDN11_00195 PF00440 Bacterial regulatory proteins, tetR family NDN11_00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_00205 PF00873 AcrB/AcrD/AcrF family NDN11_00215 PF00226 DnaJ domain NDN11_00215 PF00684 DnaJ central domain NDN11_00215 PF01556 DnaJ C terminal domain NDN11_00220 PF05173 Dihydrodipicolinate reductase, C-terminus NDN11_00220 PF01113 Dihydrodipicolinate reductase, N-terminus NDN11_00230 PF07690 Major Facilitator Superfamily NDN11_00235 PF00248 Aldo/keto reductase family NDN11_00240 PF03466 LysR substrate binding domain NDN11_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_00250 PF00392 Bacterial regulatory proteins, gntR family NDN11_00250 PF00155 Aminotransferase class I and II NDN11_00255 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_00255 PF00107 Zinc-binding dehydrogenase NDN11_00260 PF03352 Methyladenine glycosylase NDN11_00275 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN11_00275 PF14815 NUDIX domain NDN11_00275 PF00633 Helix-hairpin-helix motif NDN11_00275 PF10576 Iron-sulfur binding domain of endonuclease III NDN11_00285 PF07043 Protein of unknown function (DUF1328) NDN11_00290 PF03692 Putative zinc- or iron-chelating domain NDN11_00295 PF07995 Glucose / Sorbosone dehydrogenase NDN11_00300 PF00144 Beta-lactamase NDN11_00305 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_00305 PF12002 MgsA AAA+ ATPase C terminal NDN11_00305 PF16193 AAA C-terminal domain NDN11_00310 PF00892 EamA-like transporter family NDN11_00325 PF07715 TonB-dependent Receptor Plug Domain NDN11_00325 PF00593 TonB dependent receptor NDN11_00330 PF01259 SAICAR synthetase NDN11_00340 PF00701 Dihydrodipicolinate synthetase family NDN11_00345 PF00857 Isochorismatase family NDN11_00350 PF01037 Lrp/AsnC ligand binding domain NDN11_00360 PF01380 SIS domain NDN11_00365 PF12804 MobA-like NTP transferase domain NDN11_00365 PF14602 Hexapeptide repeat of succinyl-transferase NDN11_00365 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_00370 PF04608 Phosphatidylglycerophosphatase A NDN11_00375 PF00586 AIR synthase related protein, N-terminal domain NDN11_00375 PF02769 AIR synthase related protein, C-terminal domain NDN11_00380 PF01029 NusB family NDN11_00385 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDN11_00390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN11_00390 PF00925 GTP cyclohydrolase II NDN11_00415 PF02580 D-Tyr-tRNA(Tyr) deacylase NDN11_00420 PF00199 Catalase NDN11_00420 PF06628 Catalase-related immune-responsive NDN11_00430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN11_00430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDN11_00440 PF00581 Rhodanese-like domain NDN11_00445 PF02666 Phosphatidylserine decarboxylase NDN11_00455 PF09208 Restriction endonuclease MspI NDN11_00460 PF00145 C-5 cytosine-specific DNA methylase NDN11_00480 PF03466 LysR substrate binding domain NDN11_00480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_00485 PF03466 LysR substrate binding domain NDN11_00485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_00500 PF00512 His Kinase A (phospho-acceptor) domain NDN11_00500 PF00989 PAS fold NDN11_00500 PF11808 Phosphate regulon sensor protein PhoR NDN11_00505 PF00486 Transcriptional regulatory protein, C terminal NDN11_00505 PF00072 Response regulator receiver domain NDN11_00515 PF00106 short chain dehydrogenase NDN11_00520 PF01554 MatE NDN11_00525 PF00155 Aminotransferase class I and II NDN11_00530 PF04286 Protein of unknown function (DUF445) NDN11_00545 PF04262 Glutamate-cysteine ligase NDN11_00550 PF02600 Disulfide bond formation protein DsbB NDN11_00555 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN11_00555 PF04717 Type VI secretion system, phage-baseplate injector NDN11_00555 PF13296 Putative type VI secretion system Rhs element Vgr NDN11_00560 PF00877 NlpC/P60 family NDN11_00560 PF01476 LysM domain NDN11_00590 PF05728 Uncharacterised protein family (UPF0227) NDN11_00595 PF01751 Toprim domain NDN11_00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_00595 PF00986 DNA gyrase B subunit, carboxyl terminus NDN11_00595 PF00204 DNA gyrase B NDN11_00605 PF02653 Branched-chain amino acid transport system / permease component NDN11_00615 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN11_00615 PF00005 ABC transporter NDN11_00620 PF00005 ABC transporter NDN11_00645 PF12796 Ankyrin repeats (3 copies) NDN11_00645 PF07722 Peptidase C26 NDN11_00655 PF11412 Disulphide bond corrector protein DsbC NDN11_00655 PF02683 Cytochrome C biogenesis protein transmembrane region NDN11_00665 PF17151 Periplasmic sensor domain NDN11_00665 PF00990 Diguanylate cyclase, GGDEF domain NDN11_00670 PF07859 alpha/beta hydrolase fold NDN11_00680 PF03960 ArsC family NDN11_00685 PF03372 Endonuclease/Exonuclease/phosphatase family NDN11_00690 PF00156 Phosphoribosyl transferase domain NDN11_00695 PF01820 D-ala D-ala ligase N-terminus NDN11_00695 PF07478 D-ala D-ala ligase C-terminus NDN11_00705 PF00106 short chain dehydrogenase NDN11_00720 PF01040 UbiA prenyltransferase family NDN11_00730 PF04030 D-arabinono-1,4-lactone oxidase NDN11_00730 PF01565 FAD binding domain NDN11_00735 PF00106 short chain dehydrogenase NDN11_00755 PF01047 MarR family NDN11_00760 PF00255 Glutathione peroxidase NDN11_00765 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDN11_00765 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDN11_00770 PF03033 Glycosyltransferase family 28 N-terminal domain NDN11_00770 PF04101 Glycosyltransferase family 28 C-terminal domain NDN11_00775 PF08245 Mur ligase middle domain NDN11_00775 PF02875 Mur ligase family, glutamate ligase domain NDN11_00775 PF01225 Mur ligase family, catalytic domain NDN11_00780 PF07478 D-ala D-ala ligase C-terminus NDN11_00780 PF01820 D-ala D-ala ligase N-terminus NDN11_00785 PF08478 POTRA domain, FtsQ-type NDN11_00785 PF03799 Cell division protein FtsQ NDN11_00790 PF02491 SHS2 domain inserted in FTSA NDN11_00795 PF00091 Tubulin/FtsZ family, GTPase domain NDN11_00795 PF12327 FtsZ family, C-terminal domain NDN11_00800 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDN11_00815 PF17831 Pyruvate dehydrogenase E1 component middle domain NDN11_00815 PF00456 Transketolase, thiamine diphosphate binding domain NDN11_00820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN11_00820 PF02817 e3 binding domain NDN11_00820 PF00364 Biotin-requiring enzyme NDN11_00830 PF01169 Uncharacterized protein family UPF0016 NDN11_00835 PF00258 Flavodoxin NDN11_00835 PF01613 Flavin reductase like domain NDN11_00840 PF00478 IMP dehydrogenase / GMP reductase domain NDN11_00840 PF00571 CBS domain NDN11_00845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN11_00845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN11_00845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN11_00845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN11_00850 PF01243 Pyridoxamine 5'-phosphate oxidase NDN11_00850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDN11_00855 PF02272 DHHA1 domain NDN11_00855 PF01368 DHH family NDN11_00855 PF17768 RecJ OB domain NDN11_00880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_00885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDN11_00890 PF04452 RNA methyltransferase NDN11_00895 PF00924 Mechanosensitive ion channel NDN11_00905 PF16177 Acetyl-coenzyme A synthetase N-terminus NDN11_00905 PF13193 AMP-binding enzyme C-terminal domain NDN11_00905 PF00501 AMP-binding enzyme NDN11_00910 PF00857 Isochorismatase family NDN11_00915 PF01037 Lrp/AsnC ligand binding domain NDN11_00920 PF00296 Luciferase-like monooxygenase NDN11_00925 PF03358 NADPH-dependent FMN reductase NDN11_00930 PF00072 Response regulator receiver domain NDN11_00930 PF00196 Bacterial regulatory proteins, luxR family NDN11_00940 PF00905 Penicillin binding protein transpeptidase domain NDN11_00945 PF00990 Diguanylate cyclase, GGDEF domain NDN11_00950 PF17755 UvrA DNA-binding domain NDN11_00950 PF17760 UvrA interaction domain NDN11_00955 PF00440 Bacterial regulatory proteins, tetR family NDN11_00955 PF16925 Tetracyclin repressor-like, C-terminal domain NDN11_00960 PF08990 Erythronolide synthase docking NDN11_00960 PF09277 Erythronolide synthase, docking NDN11_00960 PF16197 Ketoacyl-synthetase C-terminal extension NDN11_00960 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN11_00960 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN11_00960 PF00550 Phosphopantetheine attachment site NDN11_00960 PF14765 Polyketide synthase dehydratase NDN11_00960 PF00698 Acyl transferase domain NDN11_00960 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_00960 PF08659 KR domain NDN11_00975 PF03070 TENA/THI-4/PQQC family NDN11_00985 PF07690 Major Facilitator Superfamily NDN11_00990 PF00436 Single-strand binding protein family NDN11_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_01010 PF00857 Isochorismatase family NDN11_01015 PF05726 Pirin C-terminal cupin domain NDN11_01015 PF02678 Pirin NDN11_01020 PF01593 Flavin containing amine oxidoreductase NDN11_01050 PF02705 K+ potassium transporter NDN11_01065 PF00230 Major intrinsic protein NDN11_01080 PF00977 Histidine biosynthesis protein NDN11_01085 PF01636 Phosphotransferase enzyme family NDN11_01100 PF00296 Luciferase-like monooxygenase NDN11_01105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_01105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN11_01110 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN11_01110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_01110 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_01125 PF00916 Sulfate permease family NDN11_01125 PF01740 STAS domain NDN11_01130 PF00977 Histidine biosynthesis protein NDN11_01150 PF00117 Glutamine amidotransferase class-I NDN11_01155 PF00475 Imidazoleglycerol-phosphate dehydratase NDN11_01185 PF08241 Methyltransferase domain NDN11_01190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDN11_01190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDN11_01195 PF00512 His Kinase A (phospho-acceptor) domain NDN11_01195 PF00672 HAMP domain NDN11_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_01200 PF00072 Response regulator receiver domain NDN11_01200 PF00486 Transcriptional regulatory protein, C terminal NDN11_01205 PF17674 HHH domain NDN11_01205 PF00575 S1 RNA binding domain NDN11_01205 PF09371 Tex-like protein N-terminal domain NDN11_01205 PF16921 Tex protein YqgF-like domain NDN11_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_01240 PF03466 LysR substrate binding domain NDN11_01245 PF03600 Citrate transporter NDN11_01255 PF00083 Sugar (and other) transporter NDN11_01260 PF13411 MerR HTH family regulatory protein NDN11_01265 PF00550 Phosphopantetheine attachment site NDN11_01265 PF07993 Male sterility protein NDN11_01270 PF00106 short chain dehydrogenase NDN11_01275 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN11_01280 PF00005 ABC transporter NDN11_01280 PF12848 ABC transporter NDN11_01300 PF00529 HlyD membrane-fusion protein of T1SS NDN11_01300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_01305 PF00873 AcrB/AcrD/AcrF family NDN11_01310 PF01545 Cation efflux family NDN11_01340 PF00324 Amino acid permease NDN11_01355 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN11_01370 PF01795 MraW methylase family NDN11_01375 PF04999 Cell division protein FtsL NDN11_01385 PF01225 Mur ligase family, catalytic domain NDN11_01385 PF08245 Mur ligase middle domain NDN11_01385 PF02875 Mur ligase family, glutamate ligase domain NDN11_01390 PF08245 Mur ligase middle domain NDN11_01390 PF02875 Mur ligase family, glutamate ligase domain NDN11_01390 PF01225 Mur ligase family, catalytic domain NDN11_01395 PF00953 Glycosyl transferase family 4 NDN11_01400 PF13847 Methyltransferase domain NDN11_01405 PF17092 Penicillin-binding protein OB-like domain NDN11_01405 PF00905 Penicillin binding protein transpeptidase domain NDN11_01405 PF00912 Transglycosylase NDN11_01410 PF11104 Type IV pilus assembly protein PilM; NDN11_01415 PF05137 Fimbrial assembly protein (PilN) NDN11_01420 PF04350 Pilus assembly protein, PilO NDN11_01430 PF11741 AMIN domain NDN11_01430 PF07660 Secretin and TonB N terminus short domain NDN11_01430 PF03958 Bacterial type II/III secretion system short domain NDN11_01430 PF00263 Bacterial type II and III secretion system protein NDN11_01435 PF01202 Shikimate kinase NDN11_01440 PF01761 3-dehydroquinate synthase NDN11_01450 PF04898 Glutamate synthase central domain NDN11_01450 PF01645 Conserved region in glutamate synthase NDN11_01450 PF01493 GXGXG motif NDN11_01450 PF00310 Glutamine amidotransferases class-II NDN11_01455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN11_01455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_01460 PF07690 Major Facilitator Superfamily NDN11_01470 PF04011 LemA family NDN11_01475 PF04536 TPM domain NDN11_01485 PF07963 Prokaryotic N-terminal methylation motif NDN11_01485 PF00114 Pilin (bacterial filament) NDN11_01495 PF00114 Pilin (bacterial filament) NDN11_01495 PF07963 Prokaryotic N-terminal methylation motif NDN11_01505 PF01040 UbiA prenyltransferase family NDN11_01510 PF11846 Virulence factor membrane-bound polymerase, C-terminal NDN11_01510 PF04932 O-Antigen ligase NDN11_01510 PF15864 Protein glycosylation ligase NDN11_01515 PF00210 Ferritin-like domain NDN11_01520 PF04324 BFD-like [2Fe-2S] binding domain NDN11_01525 PF01042 Endoribonuclease L-PSP NDN11_01530 PF02824 TGS domain NDN11_01530 PF04607 Region found in RelA / SpoT proteins NDN11_01530 PF13291 ACT domain NDN11_01535 PF01192 RNA polymerase Rpb6 NDN11_01540 PF00625 Guanylate kinase NDN11_01545 PF02401 LytB protein NDN11_01550 PF00114 Pilin (bacterial filament) NDN11_01550 PF07963 Prokaryotic N-terminal methylation motif NDN11_01575 PF00114 Pilin (bacterial filament) NDN11_01575 PF07963 Prokaryotic N-terminal methylation motif NDN11_01610 PF00114 Pilin (bacterial filament) NDN11_01610 PF07963 Prokaryotic N-terminal methylation motif NDN11_01615 PF00886 Ribosomal protein S16 NDN11_01620 PF01782 RimM N-terminal domain NDN11_01620 PF05239 PRC-barrel domain NDN11_01625 PF01746 tRNA (Guanine-1)-methyltransferase NDN11_01630 PF01245 Ribosomal protein L19 NDN11_01635 PF09157 Pseudouridine synthase II TruB, C-terminal NDN11_01635 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDN11_01635 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDN11_01640 PF01925 Sulfite exporter TauE/SafE NDN11_01645 PF00892 EamA-like transporter family NDN11_01655 PF00892 EamA-like transporter family NDN11_01660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN11_01660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN11_01665 PF02913 FAD linked oxidases, C-terminal domain NDN11_01665 PF01565 FAD binding domain NDN11_01685 PF03992 Antibiotic biosynthesis monooxygenase NDN11_01690 PF02525 Flavodoxin-like fold NDN11_01705 PF07690 Major Facilitator Superfamily NDN11_01710 PF12805 FUSC-like inner membrane protein yccS NDN11_01715 PF00080 Copper/zinc superoxide dismutase (SODC) NDN11_01720 PF01594 AI-2E family transporter NDN11_01725 PF13614 AAA domain NDN11_01735 PF01209 ubiE/COQ5 methyltransferase family NDN11_01770 PF00082 Subtilase family NDN11_01785 PF05746 DALR anticodon binding domain NDN11_01785 PF02092 Glycyl-tRNA synthetase beta subunit NDN11_01790 PF02091 Glycyl-tRNA synthetase alpha subunit NDN11_01815 PF00571 CBS domain NDN11_01815 PF01743 Poly A polymerase head domain NDN11_01820 PF04024 PspC domain NDN11_01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_01830 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_01830 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN11_01830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_01840 PF01488 Shikimate / quinate 5-dehydrogenase NDN11_01840 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDN11_01840 PF08501 Shikimate dehydrogenase substrate binding domain NDN11_01845 PF00392 Bacterial regulatory proteins, gntR family NDN11_01845 PF00155 Aminotransferase class I and II NDN11_01855 PF01218 Coproporphyrinogen III oxidase NDN11_01865 PF00925 GTP cyclohydrolase II NDN11_01870 PF02779 Transketolase, pyrimidine binding domain NDN11_01870 PF02780 Transketolase, C-terminal domain NDN11_01870 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDN11_01875 PF00459 Inositol monophosphatase family NDN11_01885 PF00271 Helicase conserved C-terminal domain NDN11_01885 PF00270 DEAD/DEAH box helicase NDN11_01890 PF00005 ABC transporter NDN11_01895 PF02405 Permease MlaE NDN11_01900 PF02470 MlaD protein NDN11_01905 PF05494 MlaC protein NDN11_01915 PF01544 CorA-like Mg2+ transporter protein NDN11_01920 PF03641 Possible lysine decarboxylase NDN11_01925 PF00293 NUDIX domain NDN11_01930 PF00156 Phosphoribosyl transferase domain NDN11_01935 PF00271 Helicase conserved C-terminal domain NDN11_01935 PF00270 DEAD/DEAH box helicase NDN11_01935 PF17191 RecG wedge domain NDN11_01950 PF01553 Acyltransferase NDN11_01960 PF00375 Sodium:dicarboxylate symporter family NDN11_01970 PF01926 50S ribosome-binding GTPase NDN11_01975 PF02082 Transcriptional regulator NDN11_01980 PF00042 Globin NDN11_01980 PF00970 Oxidoreductase FAD-binding domain NDN11_01980 PF00175 Oxidoreductase NAD-binding domain NDN11_01985 PF05872 Bacterial protein of unknown function (DUF853) NDN11_01990 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN11_01995 PF00117 Glutamine amidotransferase class-I NDN11_02000 PF00338 Ribosomal protein S10p/S20e NDN11_02005 PF00297 Ribosomal protein L3 NDN11_02010 PF00573 Ribosomal protein L4/L1 family NDN11_02015 PF00276 Ribosomal protein L23 NDN11_02020 PF00181 Ribosomal Proteins L2, RNA binding domain NDN11_02020 PF03947 Ribosomal Proteins L2, C-terminal domain NDN11_02025 PF00203 Ribosomal protein S19 NDN11_02030 PF00237 Ribosomal protein L22p/L17e NDN11_02040 PF00252 Ribosomal protein L16p/L10e NDN11_02045 PF00831 Ribosomal L29 protein NDN11_02050 PF00366 Ribosomal protein S17 NDN11_02055 PF00238 Ribosomal protein L14p/L23e NDN11_02060 PF00467 KOW motif NDN11_02060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDN11_02065 PF00673 ribosomal L5P family C-terminus NDN11_02065 PF00281 Ribosomal protein L5 NDN11_02070 PF00253 Ribosomal protein S14p/S29e NDN11_02075 PF00410 Ribosomal protein S8 NDN11_02080 PF00347 Ribosomal protein L6 NDN11_02085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDN11_02090 PF00333 Ribosomal protein S5, N-terminal domain NDN11_02090 PF03719 Ribosomal protein S5, C-terminal domain NDN11_02095 PF00327 Ribosomal protein L30p/L7e NDN11_02100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDN11_02105 PF00344 SecY translocase NDN11_02110 PF00444 Ribosomal protein L36 NDN11_02115 PF00416 Ribosomal protein S13/S18 NDN11_02120 PF00411 Ribosomal protein S11 NDN11_02125 PF00163 Ribosomal protein S4/S9 N-terminal domain NDN11_02125 PF01479 S4 domain NDN11_02130 PF01000 RNA polymerase Rpb3/RpoA insert domain NDN11_02130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDN11_02130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDN11_02135 PF01196 Ribosomal protein L17 NDN11_02145 PF00743 Flavin-binding monooxygenase-like NDN11_02155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_02155 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_02155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_02160 PF03937 Flavinator of succinate dehydrogenase NDN11_02195 PF00892 EamA-like transporter family NDN11_02200 PF12833 Helix-turn-helix domain NDN11_02220 PF01432 Peptidase family M3 NDN11_02230 PF17876 Cold shock domain NDN11_02230 PF00575 S1 RNA binding domain NDN11_02230 PF08461 Ribonuclease R winged-helix domain NDN11_02230 PF08206 Ribonuclease B OB domain NDN11_02230 PF00773 RNB domain NDN11_02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN11_02290 PF03631 Virulence factor BrkB NDN11_02295 PF03358 NADPH-dependent FMN reductase NDN11_02305 PF01790 Prolipoprotein diacylglyceryl transferase NDN11_02315 PF00245 Alkaline phosphatase NDN11_02335 PF00902 Sec-independent protein translocase protein (TatC) NDN11_02340 PF02416 mttA/Hcf106 family NDN11_02345 PF02416 mttA/Hcf106 family NDN11_02355 PF01725 Ham1 family NDN11_02370 PF00561 alpha/beta hydrolase fold NDN11_02370 PF07021 Methionine biosynthesis protein MetW NDN11_02375 PF00561 alpha/beta hydrolase fold NDN11_02380 PF00682 HMGL-like NDN11_02380 PF08502 LeuA allosteric (dimerisation) domain NDN11_02385 PF18331 PKHD-type hydroxylase C-terminal domain NDN11_02385 PF13640 2OG-Fe(II) oxygenase superfamily NDN11_02390 PF00593 TonB dependent receptor NDN11_02390 PF07715 TonB-dependent Receptor Plug Domain NDN11_02395 PF01070 FMN-dependent dehydrogenase NDN11_02400 PF13640 2OG-Fe(II) oxygenase superfamily NDN11_02400 PF18331 PKHD-type hydroxylase C-terminal domain NDN11_02405 PF00593 TonB dependent receptor NDN11_02405 PF07715 TonB-dependent Receptor Plug Domain NDN11_02410 PF00593 TonB dependent receptor NDN11_02410 PF07715 TonB-dependent Receptor Plug Domain NDN11_02415 PF05697 Bacterial trigger factor protein (TF) NDN11_02415 PF05698 Bacterial trigger factor protein (TF) C-terminus NDN11_02415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_02420 PF00574 Clp protease NDN11_02425 PF07724 AAA domain (Cdc48 subfamily) NDN11_02425 PF06689 ClpX C4-type zinc finger NDN11_02425 PF10431 C-terminal, D2-small domain, of ClpB protein NDN11_02440 PF05681 Fumarate hydratase (Fumerase) NDN11_02440 PF05683 Fumarase C-terminus NDN11_02445 PF02311 AraC-like ligand binding domain NDN11_02445 PF12833 Helix-turn-helix domain NDN11_02455 PF07085 DRTGG domain NDN11_02455 PF01515 Phosphate acetyl/butaryl transferase NDN11_02460 PF00871 Acetokinase family NDN11_02465 PF00171 Aldehyde dehydrogenase family NDN11_02470 PF12697 Alpha/beta hydrolase family NDN11_02480 PF00933 Glycosyl hydrolase family 3 N terminal domain NDN11_02485 PF17804 Tail specific protease N-terminal domain NDN11_02485 PF00595 PDZ domain NDN11_02485 PF03572 Peptidase family S41 NDN11_02485 PF11818 C-terminal domain of tail specific protease (DUF3340) NDN11_02510 PF16360 GTP-binding GTPase Middle Region NDN11_02510 PF13167 GTP-binding GTPase N-terminal NDN11_02510 PF01926 50S ribosome-binding GTPase NDN11_02525 PF13091 PLD-like domain NDN11_02530 PF00149 Calcineurin-like phosphoesterase NDN11_02535 PF00691 OmpA family NDN11_02535 PF01389 OmpA-like transmembrane domain NDN11_02540 PF17152 Periplasmic sensor domain NDN11_02540 PF00990 Diguanylate cyclase, GGDEF domain NDN11_02580 PF04273 Putative phosphatase (DUF442) NDN11_02580 PF00753 Metallo-beta-lactamase superfamily NDN11_02585 PF00561 alpha/beta hydrolase fold NDN11_02590 PF00085 Thioredoxin NDN11_02595 PF03061 Thioesterase superfamily NDN11_02600 PF13185 GAF domain NDN11_02610 PF04461 Protein of unknown function (DUF520) NDN11_02620 PF01266 FAD dependent oxidoreductase NDN11_02620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NDN11_02635 PF04279 Intracellular septation protein A NDN11_02640 PF02811 PHP domain NDN11_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_02645 PF03466 LysR substrate binding domain NDN11_02650 PF00248 Aldo/keto reductase family NDN11_02655 PF01062 Bestrophin, RFP-TM, chloride channel NDN11_02660 PF04002 RadC-like JAB domain NDN11_02665 PF02441 Flavoprotein NDN11_02665 PF04127 DNA / pantothenate metabolism flavoprotein NDN11_02675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN11_02675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN11_02680 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA NDN11_02700 PF02556 Preprotein translocase subunit SecB NDN11_02705 PF00462 Glutaredoxin NDN11_02715 PF03193 RsgA GTPase NDN11_02720 PF00929 Exonuclease NDN11_02745 PF02321 Outer membrane efflux protein NDN11_02750 PF12704 MacB-like periplasmic core domain NDN11_02750 PF00005 ABC transporter NDN11_02750 PF02687 FtsX-like permease family NDN11_02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_02760 PF02146 Sir2 family NDN11_02775 PF09334 tRNA synthetases class I (M) NDN11_02775 PF08264 Anticodon-binding domain of tRNA NDN11_02775 PF00133 tRNA synthetases class I (I, L, M and V) NDN11_02775 PF13603 Leucyl-tRNA synthetase, Domain 2 NDN11_02785 PF00205 Thiamine pyrophosphate enzyme, central domain NDN11_02785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN11_02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN11_02790 PF10369 Small subunit of acetolactate synthase NDN11_02795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NDN11_02795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NDN11_02800 PF03707 Bacterial signalling protein N terminal repeat NDN11_02800 PF00990 Diguanylate cyclase, GGDEF domain NDN11_02800 PF00563 EAL domain NDN11_02815 PF01381 Helix-turn-helix NDN11_02835 PF03960 ArsC family NDN11_02840 PF01022 Bacterial regulatory protein, arsR family NDN11_02845 PF01758 Sodium Bile acid symporter family NDN11_02855 PF05658 Head domain of trimeric autotransporter adhesin NDN11_02855 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_02855 PF03895 YadA-like membrane anchor domain NDN11_02855 PF13018 Extended Signal Peptide of Type V secretion system NDN11_02860 PF00691 OmpA family NDN11_02860 PF04355 SmpA / OmlA family NDN11_02865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_02865 PF12833 Helix-turn-helix domain NDN11_02870 PF03466 LysR substrate binding domain NDN11_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_02880 PF02219 Methylenetetrahydrofolate reductase NDN11_02885 PF01613 Flavin reductase like domain NDN11_02890 PF08267 Cobalamin-independent synthase, N-terminal domain NDN11_02890 PF01717 Cobalamin-independent synthase, Catalytic domain NDN11_02900 PF00009 Elongation factor Tu GTP binding domain NDN11_02900 PF03144 Elongation factor Tu domain 2 NDN11_02900 PF16658 Class II release factor RF3, C-terminal domain NDN11_02910 PF11738 Protein of unknown function (DUF3298) NDN11_02910 PF13739 Deacetylase PdaC NDN11_02910 PF01522 Polysaccharide deacetylase NDN11_02915 PF01026 TatD related DNase NDN11_02920 PF00330 Aconitase family (aconitate hydratase) NDN11_02920 PF00694 Aconitase C-terminal domain NDN11_02930 PF00899 ThiF family NDN11_02950 PF01207 Dihydrouridine synthase (Dus) NDN11_02955 PF00072 Response regulator receiver domain NDN11_02955 PF00196 Bacterial regulatory proteins, luxR family NDN11_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_02960 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_02960 PF00512 His Kinase A (phospho-acceptor) domain NDN11_02960 PF01627 Hpt domain NDN11_02960 PF00989 PAS fold NDN11_02960 PF00072 Response regulator receiver domain NDN11_02970 PF07690 Major Facilitator Superfamily NDN11_02980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NDN11_02980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NDN11_02985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NDN11_02990 PF02233 NAD(P) transhydrogenase beta subunit NDN11_03000 PF00106 short chain dehydrogenase NDN11_03005 PF00293 NUDIX domain NDN11_03015 PF01261 Xylose isomerase-like TIM barrel NDN11_03020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN11_03020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN11_03025 PF00378 Enoyl-CoA hydratase/isomerase NDN11_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_03030 PF00512 His Kinase A (phospho-acceptor) domain NDN11_03030 PF00672 HAMP domain NDN11_03030 PF01627 Hpt domain NDN11_03030 PF00072 Response regulator receiver domain NDN11_03030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDN11_03035 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_03045 PF05958 tRNA (Uracil-5-)-methyltransferase NDN11_03050 PF02824 TGS domain NDN11_03050 PF04607 Region found in RelA / SpoT proteins NDN11_03050 PF13291 ACT domain NDN11_03060 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN11_03070 PF01743 Poly A polymerase head domain NDN11_03070 PF12626 Polymerase A arginine-rich C-terminus NDN11_03070 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN11_03075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDN11_03080 PF02548 Ketopantoate hydroxymethyltransferase NDN11_03085 PF02569 Pantoate-beta-alanine ligase NDN11_03090 PF03668 P-loop ATPase protein family NDN11_03095 PF00381 PTS HPr component phosphorylation site NDN11_03100 PF04751 Protein of unknown function (DUF615) NDN11_03110 PF00501 AMP-binding enzyme NDN11_03110 PF13193 AMP-binding enzyme C-terminal domain NDN11_03115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN11_03115 PF03129 Anticodon binding domain NDN11_03115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN11_03115 PF02824 TGS domain NDN11_03120 PF05198 Translation initiation factor IF-3, N-terminal domain NDN11_03120 PF00707 Translation initiation factor IF-3, C-terminal domain NDN11_03130 PF02798 Glutathione S-transferase, N-terminal domain NDN11_03130 PF00043 Glutathione S-transferase, C-terminal domain NDN11_03145 PF09335 SNARE associated Golgi protein NDN11_03150 PF07690 Major Facilitator Superfamily NDN11_03155 PF01632 Ribosomal protein L35 NDN11_03160 PF00453 Ribosomal protein L20 NDN11_03185 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDN11_03185 PF01409 tRNA synthetases class II core domain (F) NDN11_03190 PF03483 B3/4 domain NDN11_03190 PF03147 Ferredoxin-fold anticodon binding domain NDN11_03190 PF03484 tRNA synthetase B5 domain NDN11_03190 PF01588 Putative tRNA binding domain NDN11_03190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDN11_03195 PF00216 Bacterial DNA-binding protein NDN11_03205 PF07497 Rho termination factor, RNA-binding domain NDN11_03205 PF07498 Rho termination factor, N-terminal domain NDN11_03205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN11_03210 PF00085 Thioredoxin NDN11_03215 PF02541 Ppx/GppA phosphatase family NDN11_03220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDN11_03225 PF11734 TilS substrate C-terminal domain NDN11_03225 PF09179 TilS substrate binding domain NDN11_03225 PF01171 PP-loop family NDN11_03230 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN11_03230 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN11_03235 PF02325 YGGT family NDN11_03240 PF01757 Acyltransferase family NDN11_03245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDN11_03245 PF00476 DNA polymerase family A NDN11_03245 PF01612 3'-5' exonuclease NDN11_03245 PF01367 5'-3' exonuclease, C-terminal SAM fold NDN11_03265 PF00437 Type II/IV secretion system protein NDN11_03270 PF02566 OsmC-like protein NDN11_03275 PF01047 MarR family NDN11_03285 PF00795 Carbon-nitrogen hydrolase NDN11_03330 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDN11_03330 PF04963 Sigma-54 factor, core binding domain NDN11_03330 PF04552 Sigma-54, DNA binding domain NDN11_03335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDN11_03340 PF01722 BolA-like protein NDN11_03345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN11_03350 PF01634 ATP phosphoribosyltransferase NDN11_03355 PF04542 Sigma-70 region 2 NDN11_03355 PF12680 SnoaL-like domain NDN11_03355 PF08281 Sigma-70, region 4 NDN11_03365 PF00815 Histidinol dehydrogenase NDN11_03370 PF00155 Aminotransferase class I and II NDN11_03375 PF04715 Anthranilate synthase component I, N terminal region NDN11_03375 PF00425 chorismate binding enzyme NDN11_03415 PF00293 NUDIX domain NDN11_03425 PF00814 Glycoprotease family NDN11_03430 PF02673 Bacitracin resistance protein BacA NDN11_03435 PF04445 Putative SAM-dependent methyltransferase NDN11_03445 PF00756 Putative esterase NDN11_03460 PF00834 Ribulose-phosphate 3 epimerase family NDN11_03470 PF00394 Multicopper oxidase NDN11_03470 PF07732 Multicopper oxidase NDN11_03470 PF07731 Multicopper oxidase NDN11_03475 PF05275 Copper resistance protein B precursor (CopB) NDN11_03490 PF00893 Small Multidrug Resistance protein NDN11_03495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN11_03495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN11_03500 PF01960 ArgJ family NDN11_03505 PF02445 Quinolinate synthetase A protein NDN11_03535 PF05199 GMC oxidoreductase NDN11_03535 PF00732 GMC oxidoreductase NDN11_03545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN11_03550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN11_03550 PF00156 Phosphoribosyl transferase domain NDN11_03555 PF00107 Zinc-binding dehydrogenase NDN11_03555 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_03565 PF00732 GMC oxidoreductase NDN11_03565 PF05199 GMC oxidoreductase NDN11_03570 PF00171 Aldehyde dehydrogenase family NDN11_03575 PF00440 Bacterial regulatory proteins, tetR family NDN11_03575 PF13977 BetI-type transcriptional repressor, C-terminal NDN11_03580 PF02028 BCCT, betaine/carnitine/choline family transporter NDN11_03585 PF02028 BCCT, betaine/carnitine/choline family transporter NDN11_03600 PF06039 Malate:quinone oxidoreductase (Mqo) NDN11_03665 PF00268 Ribonucleotide reductase, small chain NDN11_03675 PF03477 ATP cone domain NDN11_03675 PF02867 Ribonucleotide reductase, barrel domain NDN11_03675 PF00317 Ribonucleotide reductase, all-alpha domain NDN11_03680 PF00072 Response regulator receiver domain NDN11_03680 PF00486 Transcriptional regulatory protein, C terminal NDN11_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_03685 PF00512 His Kinase A (phospho-acceptor) domain NDN11_03685 PF00672 HAMP domain NDN11_03695 PF00990 Diguanylate cyclase, GGDEF domain NDN11_03700 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDN11_03705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDN11_03710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDN11_03710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDN11_03720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDN11_03720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDN11_03720 PF10531 SLBB domain NDN11_03725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN11_03725 PF00384 Molybdopterin oxidoreductase NDN11_03725 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDN11_03730 PF00146 NADH dehydrogenase NDN11_03735 PF12838 4Fe-4S dicluster domain NDN11_03740 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDN11_03745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN11_03750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN11_03750 PF00361 Proton-conducting membrane transporter NDN11_03755 PF00361 Proton-conducting membrane transporter NDN11_03760 PF00361 Proton-conducting membrane transporter NDN11_03775 PF07715 TonB-dependent Receptor Plug Domain NDN11_03775 PF00593 TonB dependent receptor NDN11_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_03780 PF03466 LysR substrate binding domain NDN11_03785 PF00970 Oxidoreductase FAD-binding domain NDN11_03785 PF00175 Oxidoreductase NAD-binding domain NDN11_03800 PF05552 Conserved TM helix NDN11_03820 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_03825 PF13533 Biotin-lipoyl like NDN11_03845 PF08241 Methyltransferase domain NDN11_03850 PF06100 MCRA family NDN11_03860 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN11_03860 PF00753 Metallo-beta-lactamase superfamily NDN11_03870 PF01588 Putative tRNA binding domain NDN11_03870 PF09334 tRNA synthetases class I (M) NDN11_03885 PF13302 Acetyltransferase (GNAT) domain NDN11_03895 PF10609 NUBPL iron-transfer P-loop NTPase NDN11_03900 PF01048 Phosphorylase superfamily NDN11_03915 PF00692 dUTPase NDN11_03965 PF01207 Dihydrouridine synthase (Dus) NDN11_03980 PF00448 SRP54-type protein, GTPase domain NDN11_03980 PF02881 SRP54-type protein, helical bundle domain NDN11_03980 PF02978 Signal peptide binding domain NDN11_03990 PF03309 Type III pantothenate kinase NDN11_04000 PF01925 Sulfite exporter TauE/SafE NDN11_04020 PF06470 SMC proteins Flexible Hinge Domain NDN11_04020 PF02463 RecF/RecN/SMC N terminal domain NDN11_04030 PF00533 BRCA1 C Terminus (BRCT) domain NDN11_04030 PF03120 NAD-dependent DNA ligase OB-fold domain NDN11_04030 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDN11_04030 PF12826 Helix-hairpin-helix motif NDN11_04030 PF01653 NAD-dependent DNA ligase adenylation domain NDN11_04040 PF00210 Ferritin-like domain NDN11_04050 PF07690 Major Facilitator Superfamily NDN11_04055 PF03594 Benzoate membrane transport protein NDN11_04060 PF00106 short chain dehydrogenase NDN11_04065 PF00970 Oxidoreductase FAD-binding domain NDN11_04065 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_04065 PF00175 Oxidoreductase NAD-binding domain NDN11_04070 PF00866 Ring hydroxylating beta subunit NDN11_04075 PF00355 Rieske [2Fe-2S] domain NDN11_04075 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN11_04080 PF03466 LysR substrate binding domain NDN11_04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_04085 PF00578 AhpC/TSA family NDN11_04095 PF08241 Methyltransferase domain NDN11_04095 PF12697 Alpha/beta hydrolase family NDN11_04100 PF00202 Aminotransferase class-III NDN11_04100 PF06968 Biotin and Thiamin Synthesis associated domain NDN11_04100 PF04055 Radical SAM superfamily NDN11_04105 PF00155 Aminotransferase class I and II NDN11_04125 PF02472 Biopolymer transport protein ExbD/TolR NDN11_04130 PF02472 Biopolymer transport protein ExbD/TolR NDN11_04135 PF01618 MotA/TolQ/ExbB proton channel family NDN11_04145 PF00593 TonB dependent receptor NDN11_04145 PF07715 TonB-dependent Receptor Plug Domain NDN11_04150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN11_04160 PF01432 Peptidase family M3 NDN11_04165 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_04170 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_04170 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN11_04175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN11_04175 PF00005 ABC transporter NDN11_04180 PF01479 S4 domain NDN11_04180 PF00849 RNA pseudouridylate synthase NDN11_04185 PF04079 Segregation and condensation complex subunit ScpB NDN11_04190 PF02616 Segregation and condensation protein ScpA NDN11_04205 PF01300 Telomere recombination NDN11_04210 PF04315 Elongation factor P hydroxylase NDN11_04215 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDN11_04220 PF01783 Ribosomal L32p protein family NDN11_04225 PF00698 Acyl transferase domain NDN11_04235 PF00550 Phosphopantetheine attachment site NDN11_04240 PF01476 LysM domain NDN11_04240 PF04972 BON domain NDN11_04245 PF02581 Thiamine monophosphate synthase NDN11_04245 PF08543 Phosphomethylpyrimidine kinase NDN11_04245 PF03070 TENA/THI-4/PQQC family NDN11_04250 PF13419 Haloacid dehalogenase-like hydrolase NDN11_04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN11_04270 PF00027 Cyclic nucleotide-binding domain NDN11_04270 PF01734 Patatin-like phospholipase NDN11_04275 PF02261 Aspartate decarboxylase NDN11_04280 PF01195 Peptidyl-tRNA hydrolase NDN11_04285 PF01386 Ribosomal L25p family NDN11_04290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN11_04290 PF14572 Phosphoribosyl synthetase-associated domain NDN11_04315 PF08544 GHMP kinases C terminal NDN11_04315 PF00288 GHMP kinases N terminal domain NDN11_04320 PF03550 Outer membrane lipoprotein LolB NDN11_04330 PF01488 Shikimate / quinate 5-dehydrogenase NDN11_04330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDN11_04330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDN11_04335 PF08275 DNA primase catalytic core, N-terminal domain NDN11_04335 PF08278 DNA primase DnaG DnaB-binding NDN11_04335 PF01807 CHC2 zinc finger NDN11_04335 PF10410 DnaB-helicase binding domain of primase NDN11_04340 PF13525 Outer membrane lipoprotein NDN11_04345 PF00849 RNA pseudouridylate synthase NDN11_04345 PF01479 S4 domain NDN11_04350 PF02578 Multi-copper polyphenol oxidoreductase laccase NDN11_04355 PF03358 NADPH-dependent FMN reductase NDN11_04360 PF01668 SmpB protein NDN11_04365 PF01467 Cytidylyltransferase-like NDN11_04370 PF00037 4Fe-4S binding domain NDN11_04395 PF00795 Carbon-nitrogen hydrolase NDN11_04395 PF02540 NAD synthase NDN11_04420 PF03653 Uncharacterised protein family (UPF0093) NDN11_04425 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN11_04425 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN11_04435 PF00164 Ribosomal protein S12/S23 NDN11_04440 PF00177 Ribosomal protein S7p/S5e NDN11_04445 PF00679 Elongation factor G C-terminus NDN11_04445 PF14492 Elongation Factor G, domain II NDN11_04445 PF03764 Elongation factor G, domain IV NDN11_04445 PF00009 Elongation factor Tu GTP binding domain NDN11_04445 PF03144 Elongation factor Tu domain 2 NDN11_04450 PF03143 Elongation factor Tu C-terminal domain NDN11_04450 PF03144 Elongation factor Tu domain 2 NDN11_04450 PF00009 Elongation factor Tu GTP binding domain NDN11_04465 PF00583 Acetyltransferase (GNAT) family NDN11_04470 PF04377 Arginine-tRNA-protein transferase, C terminus NDN11_04470 PF04376 Arginine-tRNA-protein transferase, N terminus NDN11_04475 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDN11_04480 PF13847 Methyltransferase domain NDN11_04480 PF10119 Predicted methyltransferase regulatory domain NDN11_04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_04490 PF01580 FtsK/SpoIIIE family NDN11_04490 PF09397 Ftsk gamma domain NDN11_04490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDN11_04490 PF17854 FtsK alpha domain NDN11_04505 PF03776 Septum formation topological specificity factor MinE NDN11_04510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NDN11_04515 PF03775 Septum formation inhibitor MinC, C-terminal domain NDN11_04525 PF01553 Acyltransferase NDN11_04530 PF13488 Glycine zipper NDN11_04530 PF00691 OmpA family NDN11_04535 PF13361 UvrD-like helicase C-terminal domain NDN11_04535 PF00580 UvrD/REP helicase N-terminal domain NDN11_04540 PF00692 dUTPase NDN11_04545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN11_04545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN11_04545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN11_04545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN11_04550 PF00696 Amino acid kinase family NDN11_04560 PF13230 Glutamine amidotransferases class-II NDN11_04565 PF01814 Hemerythrin HHE cation binding domain NDN11_04575 PF03658 RnfH family Ubiquitin NDN11_04580 PF04355 SmpA / OmlA family NDN11_04585 PF01475 Ferric uptake regulator family NDN11_04590 PF00437 Type II/IV secretion system protein NDN11_04595 PF00437 Type II/IV secretion system protein NDN11_04600 PF01168 Alanine racemase, N-terminal domain NDN11_04610 PF13419 Haloacid dehalogenase-like hydrolase NDN11_04625 PF00149 Calcineurin-like phosphoesterase NDN11_04625 PF12320 Type 5 capsule protein repressor C-terminal domain NDN11_04630 PF00378 Enoyl-CoA hydratase/isomerase NDN11_04650 PF08338 Domain of unknown function (DUF1731) NDN11_04650 PF01370 NAD dependent epimerase/dehydratase family NDN11_04655 PF01266 FAD dependent oxidoreductase NDN11_04660 PF00490 Delta-aminolevulinic acid dehydratase NDN11_04665 PF03061 Thioesterase superfamily NDN11_04670 PF08241 Methyltransferase domain NDN11_04675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN11_04675 PF00355 Rieske [2Fe-2S] domain NDN11_04680 PF00866 Ring hydroxylating beta subunit NDN11_04685 PF00175 Oxidoreductase NAD-binding domain NDN11_04685 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_04685 PF00970 Oxidoreductase FAD-binding domain NDN11_04690 PF07690 Major Facilitator Superfamily NDN11_04700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_04700 PF00529 HlyD membrane-fusion protein of T1SS NDN11_04705 PF07690 Major Facilitator Superfamily NDN11_04715 PF00589 Phage integrase family NDN11_04715 PF13356 Arm DNA-binding domain NDN11_04775 PF07728 AAA domain (dynein-related subfamily) NDN11_04775 PF12102 Domain of unknown function (DUF3578) NDN11_04775 PF12102 Domain of unknown function (DUF3578) NDN11_04775 PF07728 AAA domain (dynein-related subfamily) NDN11_04800 PF00196 Bacterial regulatory proteins, luxR family NDN11_04805 PF00171 Aldehyde dehydrogenase family NDN11_04810 PF01593 Flavin containing amine oxidoreductase NDN11_04815 PF03895 YadA-like membrane anchor domain NDN11_04815 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_04815 PF05658 Head domain of trimeric autotransporter adhesin NDN11_04815 PF13018 Extended Signal Peptide of Type V secretion system NDN11_04820 PF04355 SmpA / OmlA family NDN11_04820 PF00691 OmpA family NDN11_04830 PF00171 Aldehyde dehydrogenase family NDN11_04860 PF12146 Serine aminopeptidase, S33 NDN11_04865 PF00106 short chain dehydrogenase NDN11_04875 PF08359 YsiA-like protein, C-terminal region NDN11_04875 PF00440 Bacterial regulatory proteins, tetR family NDN11_04885 PF01266 FAD dependent oxidoreductase NDN11_04910 PF05721 Phytanoyl-CoA dioxygenase (PhyH) NDN11_04920 PF00561 alpha/beta hydrolase fold NDN11_04925 PF00743 Flavin-binding monooxygenase-like NDN11_04950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN11_04950 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN11_04955 PF00577 Outer membrane usher protein NDN11_04955 PF13954 PapC N-terminal domain NDN11_04955 PF13953 PapC C-terminal domain NDN11_04965 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN11_04965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN11_04970 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_04970 PF12833 Helix-turn-helix domain NDN11_04975 PF00756 Putative esterase NDN11_04975 PF01476 LysM domain NDN11_04995 PF01638 HxlR-like helix-turn-helix NDN11_05005 PF13417 Glutathione S-transferase, N-terminal domain NDN11_05020 PF00392 Bacterial regulatory proteins, gntR family NDN11_05020 PF00155 Aminotransferase class I and II NDN11_05025 PF00596 Class II Aldolase and Adducin N-terminal domain NDN11_05030 PF00701 Dihydrodipicolinate synthetase family NDN11_05035 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_05035 PF12833 Helix-turn-helix domain NDN11_05040 PF00106 short chain dehydrogenase NDN11_05045 PF06314 Acetoacetate decarboxylase (ADC) NDN11_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_05050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_05060 PF00440 Bacterial regulatory proteins, tetR family NDN11_05065 PF00106 short chain dehydrogenase NDN11_05070 PF00743 Flavin-binding monooxygenase-like NDN11_05075 PF07859 alpha/beta hydrolase fold NDN11_05080 PF02321 Outer membrane efflux protein NDN11_05085 PF00873 AcrB/AcrD/AcrF family NDN11_05090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_05100 PF00376 MerR family regulatory protein NDN11_05100 PF09278 MerR, DNA binding NDN11_05105 PF07660 Secretin and TonB N terminus short domain NDN11_05105 PF07715 TonB-dependent Receptor Plug Domain NDN11_05105 PF00593 TonB dependent receptor NDN11_05115 PF08021 Siderophore-interacting FAD-binding domain NDN11_05115 PF00005 ABC transporter NDN11_05115 PF04954 Siderophore-interacting protein NDN11_05115 PF00664 ABC transporter transmembrane region NDN11_05120 PF00005 ABC transporter NDN11_05125 PF01032 FecCD transport family NDN11_05130 PF01032 FecCD transport family NDN11_05135 PF00005 ABC transporter NDN11_05140 PF01497 Periplasmic binding protein NDN11_05145 PF00593 TonB dependent receptor NDN11_05145 PF07715 TonB-dependent Receptor Plug Domain NDN11_05150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN11_05150 PF13296 Putative type VI secretion system Rhs element Vgr NDN11_05150 PF04717 Type VI secretion system, phage-baseplate injector NDN11_05195 PF02321 Outer membrane efflux protein NDN11_05200 PF00873 AcrB/AcrD/AcrF family NDN11_05205 PF13533 Biotin-lipoyl like NDN11_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_05210 PF03466 LysR substrate binding domain NDN11_05215 PF07995 Glucose / Sorbosone dehydrogenase NDN11_05230 PF07690 Major Facilitator Superfamily NDN11_05235 PF12833 Helix-turn-helix domain NDN11_05240 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN11_05240 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN11_05245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN11_05245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN11_05255 PF01425 Amidase NDN11_05260 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN11_05270 PF00355 Rieske [2Fe-2S] domain NDN11_05270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN11_05285 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_05285 PF00175 Oxidoreductase NAD-binding domain NDN11_05290 PF01613 Flavin reductase like domain NDN11_05295 PF02311 AraC-like ligand binding domain NDN11_05295 PF12833 Helix-turn-helix domain NDN11_05300 PF01179 Copper amine oxidase, enzyme domain NDN11_05300 PF07833 Copper amine oxidase N-terminal domain NDN11_05300 PF02727 Copper amine oxidase, N2 domain NDN11_05300 PF02728 Copper amine oxidase, N3 domain NDN11_05310 PF05199 GMC oxidoreductase NDN11_05310 PF00732 GMC oxidoreductase NDN11_05315 PF00171 Aldehyde dehydrogenase family NDN11_05320 PF12146 Serine aminopeptidase, S33 NDN11_05325 PF00108 Thiolase, N-terminal domain NDN11_05325 PF02803 Thiolase, C-terminal domain NDN11_05330 PF01144 Coenzyme A transferase NDN11_05335 PF01144 Coenzyme A transferase NDN11_05340 PF04444 Catechol dioxygenase N terminus NDN11_05340 PF00775 Dioxygenase NDN11_05345 PF02426 Muconolactone delta-isomerase NDN11_05350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDN11_05350 PF13378 Enolase C-terminal domain-like NDN11_05355 PF03466 LysR substrate binding domain NDN11_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_05360 PF03573 outer membrane porin, OprD family NDN11_05370 PF00593 TonB dependent receptor NDN11_05370 PF07715 TonB-dependent Receptor Plug Domain NDN11_05390 PF00593 TonB dependent receptor NDN11_05390 PF07660 Secretin and TonB N terminus short domain NDN11_05390 PF07715 TonB-dependent Receptor Plug Domain NDN11_05400 PF04542 Sigma-70 region 2 NDN11_05400 PF08281 Sigma-70, region 4 NDN11_05405 PF13533 Biotin-lipoyl like NDN11_05410 PF00873 AcrB/AcrD/AcrF family NDN11_05415 PF00873 AcrB/AcrD/AcrF family NDN11_05420 PF02321 Outer membrane efflux protein NDN11_05425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_05425 PF09317 Domain of unknown function (DUF1974) NDN11_05425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_05450 PF07715 TonB-dependent Receptor Plug Domain NDN11_05460 PF00106 short chain dehydrogenase NDN11_05465 PF00390 Malic enzyme, N-terminal domain NDN11_05465 PF03949 Malic enzyme, NAD binding domain NDN11_05475 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN11_05475 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN11_05480 PF00202 Aminotransferase class-III NDN11_05485 PF04958 Arginine N-succinyltransferase beta subunit NDN11_05490 PF00171 Aldehyde dehydrogenase family NDN11_05495 PF04996 Succinylarginine dihydrolase NDN11_05500 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NDN11_05505 PF00324 Amino acid permease NDN11_05515 PF04403 Paraquat-inducible protein A NDN11_05520 PF02470 MlaD protein NDN11_05530 PF00501 AMP-binding enzyme NDN11_05530 PF13193 AMP-binding enzyme C-terminal domain NDN11_05530 PF00668 Condensation domain NDN11_05530 PF00550 Phosphopantetheine attachment site NDN11_05530 PF00975 Thioesterase domain NDN11_05535 PF01569 PAP2 superfamily NDN11_05555 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NDN11_05565 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_05565 PF07724 AAA domain (Cdc48 subfamily) NDN11_05565 PF17871 AAA lid domain NDN11_05565 PF10431 C-terminal, D2-small domain, of ClpB protein NDN11_05575 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NDN11_05580 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NDN11_05595 PF05947 Type VI secretion system, TssF NDN11_05610 PF06744 Type VI secretion protein IcmF C-terminal NDN11_05610 PF14331 ImcF-related N-terminal domain NDN11_05610 PF06761 Intracellular multiplication and human macrophage-killing NDN11_05620 PF13488 Glycine zipper NDN11_05620 PF00691 OmpA family NDN11_05635 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_05640 PF00005 ABC transporter NDN11_05640 PF03459 TOBE domain NDN11_05650 PF01545 Cation efflux family NDN11_05650 PF16916 Dimerisation domain of Zinc Transporter NDN11_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_05660 PF03466 LysR substrate binding domain NDN11_05665 PF01810 LysE type translocator NDN11_05670 PF00266 Aminotransferase class-V NDN11_05680 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_05685 PF00581 Rhodanese-like domain NDN11_05690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NDN11_05695 PF00005 ABC transporter NDN11_05700 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_05705 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN11_05710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_05710 PF12833 Helix-turn-helix domain NDN11_05715 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NDN11_05715 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NDN11_05740 PF00582 Universal stress protein family NDN11_05760 PF01327 Polypeptide deformylase NDN11_05765 PF04960 Glutaminase NDN11_05785 PF02310 B12 binding domain NDN11_05785 PF02574 Homocysteine S-methyltransferase NDN11_05785 PF02607 B12 binding domain NDN11_05785 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDN11_05785 PF00809 Pterin binding enzyme NDN11_05790 PF01384 Phosphate transporter family NDN11_05800 PF18073 Rubredoxin metal binding domain NDN11_05805 PF01235 Sodium:alanine symporter family NDN11_05810 PF00324 Amino acid permease NDN11_05820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDN11_05820 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDN11_05825 PF01678 Diaminopimelate epimerase NDN11_05830 PF01810 LysE type translocator NDN11_05835 PF02899 Phage integrase, N-terminal SAM-like domain NDN11_05835 PF00589 Phage integrase family NDN11_05840 PF01012 Electron transfer flavoprotein domain NDN11_05845 PF01012 Electron transfer flavoprotein domain NDN11_05845 PF00766 Electron transfer flavoprotein FAD-binding domain NDN11_05855 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN11_05855 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN11_05880 PF00266 Aminotransferase class-V NDN11_05895 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDN11_05910 PF02687 FtsX-like permease family NDN11_05910 PF12704 MacB-like periplasmic core domain NDN11_05915 PF00005 ABC transporter NDN11_05920 PF03772 Competence protein NDN11_05920 PF13567 Domain of unknown function (DUF4131) NDN11_05920 PF00753 Metallo-beta-lactamase superfamily NDN11_05930 PF06965 Na+/H+ antiporter 1 NDN11_05930 PF01343 Peptidase family S49 NDN11_05940 PF00551 Formyl transferase NDN11_05945 PF02769 AIR synthase related protein, C-terminal domain NDN11_05945 PF00586 AIR synthase related protein, N-terminal domain NDN11_05950 PF01594 AI-2E family transporter NDN11_05955 PF00308 Bacterial dnaA protein NDN11_05955 PF11638 DnaA N-terminal domain NDN11_05955 PF08299 Bacterial dnaA protein helix-turn-helix NDN11_05985 PF00588 SpoU rRNA Methylase family NDN11_05985 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN11_05990 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDN11_06000 PF00691 OmpA family NDN11_06005 PF07676 WD40-like Beta Propeller Repeat NDN11_06005 PF04052 TolB amino-terminal domain NDN11_06015 PF02472 Biopolymer transport protein ExbD/TolR NDN11_06020 PF01618 MotA/TolQ/ExbB proton channel family NDN11_06025 PF03061 Thioesterase superfamily NDN11_06035 PF17864 RuvB AAA lid domain NDN11_06035 PF05491 RuvB C-terminal winged helix domain NDN11_06035 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDN11_06040 PF01330 RuvA N terminal domain NDN11_06040 PF07499 RuvA, C-terminal domain NDN11_06045 PF01966 HD domain NDN11_06055 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDN11_06055 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDN11_06055 PF02769 AIR synthase related protein, C-terminal domain NDN11_06060 PF07690 Major Facilitator Superfamily NDN11_06070 PF01784 NIF3 (NGG1p interacting factor 3) NDN11_06075 PF02595 Glycerate kinase family NDN11_06080 PF00378 Enoyl-CoA hydratase/isomerase NDN11_06085 PF01467 Cytidylyltransferase-like NDN11_06085 PF00293 NUDIX domain NDN11_06100 PF00578 AhpC/TSA family NDN11_06105 PF06508 Queuosine biosynthesis protein QueC NDN11_06115 PF06508 Queuosine biosynthesis protein QueC NDN11_06120 PF04055 Radical SAM superfamily NDN11_06125 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_06125 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDN11_06125 PF14602 Hexapeptide repeat of succinyl-transferase NDN11_06135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_06135 PF03466 LysR substrate binding domain NDN11_06140 PF00005 ABC transporter NDN11_06140 PF12857 TOBE-like domain NDN11_06145 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_06150 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_06165 PF01063 Amino-transferase class IV NDN11_06170 PF02618 YceG-like family NDN11_06175 PF02223 Thymidylate kinase NDN11_06185 PF00890 FAD binding domain NDN11_06185 PF02910 Fumarate reductase flavoprotein C-term NDN11_06190 PF13180 PDZ domain NDN11_06200 PF00009 Elongation factor Tu GTP binding domain NDN11_06200 PF03144 Elongation factor Tu domain 2 NDN11_06200 PF06421 GTP-binding protein LepA C-terminus NDN11_06200 PF00679 Elongation factor G C-terminus NDN11_06205 PF10502 Signal peptidase, peptidase S26 NDN11_06215 PF00035 Double-stranded RNA binding motif NDN11_06215 PF14622 Ribonuclease-III-like NDN11_06220 PF01926 50S ribosome-binding GTPase NDN11_06220 PF07650 KH domain NDN11_06230 PF11967 Recombination protein O N terminal NDN11_06230 PF02565 Recombination protein O C terminal NDN11_06235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDN11_06240 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NDN11_06255 PF01743 Poly A polymerase head domain NDN11_06255 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN11_06260 PF00390 Malic enzyme, N-terminal domain NDN11_06260 PF03949 Malic enzyme, NAD binding domain NDN11_06260 PF01515 Phosphate acetyl/butaryl transferase NDN11_06265 PF00563 EAL domain NDN11_06265 PF00990 Diguanylate cyclase, GGDEF domain NDN11_06265 PF03707 Bacterial signalling protein N terminal repeat NDN11_06270 PF04452 RNA methyltransferase NDN11_06275 PF02219 Methylenetetrahydrofolate reductase NDN11_06280 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NDN11_06280 PF05221 S-adenosyl-L-homocysteine hydrolase NDN11_06290 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN11_06290 PF00753 Metallo-beta-lactamase superfamily NDN11_06305 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_06310 PF00005 ABC transporter NDN11_06310 PF09383 NIL domain NDN11_06315 PF03180 NLPA lipoprotein NDN11_06320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDN11_06320 PF02843 Phosphoribosylglycinamide synthetase, C domain NDN11_06320 PF02844 Phosphoribosylglycinamide synthetase, N domain NDN11_06325 PF02142 MGS-like domain NDN11_06325 PF01808 AICARFT/IMPCHase bienzyme NDN11_06330 PF02954 Bacterial regulatory protein, Fis family NDN11_06350 PF01134 Glucose inhibited division protein A NDN11_06350 PF13932 GidA associated domain NDN11_06355 PF00893 Small Multidrug Resistance protein NDN11_06365 PF12833 Helix-turn-helix domain NDN11_06365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_06375 PF02424 ApbE family NDN11_06385 PF00667 FAD binding domain NDN11_06385 PF00258 Flavodoxin NDN11_06385 PF00175 Oxidoreductase NAD-binding domain NDN11_06400 PF00593 TonB dependent receptor NDN11_06400 PF07715 TonB-dependent Receptor Plug Domain NDN11_06410 PF00860 Permease family NDN11_06415 PF00962 Adenosine/AMP deaminase NDN11_06420 PF01292 Prokaryotic cytochrome b561 NDN11_06430 PF01351 Ribonuclease HII NDN11_06435 PF02599 Global regulator protein family NDN11_06440 PF01842 ACT domain NDN11_06440 PF13840 ACT domain NDN11_06440 PF00696 Amino acid kinase family NDN11_06445 PF02272 DHHA1 domain NDN11_06445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN11_06445 PF01411 tRNA synthetases class II (A) NDN11_06450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN11_06450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN11_06460 PF00583 Acetyltransferase (GNAT) family NDN11_06465 PF13393 Histidyl-tRNA synthetase NDN11_06470 PF00709 Adenylosuccinate synthetase NDN11_06485 PF14403 Circularly permuted ATP-grasp type 2 NDN11_06495 PF08379 Bacterial transglutaminase-like N-terminal region NDN11_06495 PF01841 Transglutaminase-like superfamily NDN11_06510 PF00842 Alanine racemase, C-terminal domain NDN11_06510 PF01168 Alanine racemase, N-terminal domain NDN11_06515 PF00772 DnaB-like helicase N terminal domain NDN11_06515 PF03796 DnaB-like helicase C terminal domain NDN11_06520 PF01638 HxlR-like helix-turn-helix NDN11_06525 PF02525 Flavodoxin-like fold NDN11_06530 PF01281 Ribosomal protein L9, N-terminal domain NDN11_06530 PF03948 Ribosomal protein L9, C-terminal domain NDN11_06535 PF01084 Ribosomal protein S18 NDN11_06540 PF01250 Ribosomal protein S6 NDN11_06550 PF01040 UbiA prenyltransferase family NDN11_06555 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDN11_06560 PF00510 Cytochrome c oxidase subunit III NDN11_06565 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDN11_06570 PF06481 COX Aromatic Rich Motif NDN11_06570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDN11_06580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NDN11_06580 PF00391 PEP-utilising enzyme, mobile domain NDN11_06580 PF02896 PEP-utilising enzyme, TIM barrel domain NDN11_06585 PF03618 Kinase/pyrophosphorylase NDN11_06590 PF03707 Bacterial signalling protein N terminal repeat NDN11_06590 PF00563 EAL domain NDN11_06590 PF00990 Diguanylate cyclase, GGDEF domain NDN11_06595 PF00296 Luciferase-like monooxygenase NDN11_06605 PF00849 RNA pseudouridylate synthase NDN11_06605 PF01479 S4 domain NDN11_06610 PF00583 Acetyltransferase (GNAT) family NDN11_06620 PF00849 RNA pseudouridylate synthase NDN11_06620 PF01479 S4 domain NDN11_06630 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NDN11_06635 PF01119 DNA mismatch repair protein, C-terminal domain NDN11_06635 PF08676 MutL C terminal dimerisation domain NDN11_06645 PF17209 Hfq protein NDN11_06660 PF02525 Flavodoxin-like fold NDN11_06665 PF00881 Nitroreductase family NDN11_06670 PF00149 Calcineurin-like phosphoesterase NDN11_06675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN11_06680 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN11_06680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDN11_06685 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN11_06685 PF00117 Glutamine amidotransferase class-I NDN11_06695 PF14493 Helix-turn-helix domain NDN11_06695 PF05970 PIF1-like helicase NDN11_06715 PF03466 LysR substrate binding domain NDN11_06715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_06720 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN11_06725 PF02028 BCCT, betaine/carnitine/choline family transporter NDN11_06730 PF07859 alpha/beta hydrolase fold NDN11_06735 PF00355 Rieske [2Fe-2S] domain NDN11_06735 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN11_06740 PF00171 Aldehyde dehydrogenase family NDN11_06745 PF00970 Oxidoreductase FAD-binding domain NDN11_06745 PF00175 Oxidoreductase NAD-binding domain NDN11_06745 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_06750 PF00155 Aminotransferase class I and II NDN11_06755 PF02080 TrkA-C domain NDN11_06755 PF06826 Predicted Permease Membrane Region NDN11_06760 PF05658 Head domain of trimeric autotransporter adhesin NDN11_06760 PF03895 YadA-like membrane anchor domain NDN11_06760 PF13018 Extended Signal Peptide of Type V secretion system NDN11_06760 PF05658 Head domain of trimeric autotransporter adhesin NDN11_06760 PF03895 YadA-like membrane anchor domain NDN11_06760 PF13018 Extended Signal Peptide of Type V secretion system NDN11_06760 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_06760 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_06765 PF00691 OmpA family NDN11_06765 PF04355 SmpA / OmlA family NDN11_06770 PF01614 Bacterial transcriptional regulator NDN11_06770 PF09339 IclR helix-turn-helix domain NDN11_06775 PF01144 Coenzyme A transferase NDN11_06780 PF01144 Coenzyme A transferase NDN11_06785 PF00108 Thiolase, N-terminal domain NDN11_06785 PF02803 Thiolase, C-terminal domain NDN11_06790 PF10397 Adenylosuccinate lyase C-terminus NDN11_06790 PF00206 Lyase NDN11_06795 PF00561 alpha/beta hydrolase fold NDN11_06800 PF07690 Major Facilitator Superfamily NDN11_06805 PF02627 Carboxymuconolactone decarboxylase family NDN11_06810 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDN11_06810 PF00775 Dioxygenase NDN11_06815 PF00775 Dioxygenase NDN11_06820 PF01487 Type I 3-dehydroquinase NDN11_06825 PF05048 Periplasmic copper-binding protein (NosD) NDN11_06830 PF04966 Carbohydrate-selective porin, OprB family NDN11_06835 PF13360 PQQ-like domain NDN11_06835 PF01011 PQQ enzyme repeat NDN11_06845 PF00576 HIUase/Transthyretin family NDN11_06850 PF00860 Permease family NDN11_06860 PF01494 FAD binding domain NDN11_06865 PF07729 FCD domain NDN11_06865 PF00392 Bacterial regulatory proteins, gntR family NDN11_06870 PF03561 Allantoicase repeat NDN11_06875 PF04115 Ureidoglycolate lyase NDN11_06885 PF09084 NMT1/THI5 like NDN11_06890 PF00005 ABC transporter NDN11_06895 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_06900 PF01979 Amidohydrolase family NDN11_06915 PF01872 RibD C-terminal domain NDN11_06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_06925 PF03466 LysR substrate binding domain NDN11_06930 PF00355 Rieske [2Fe-2S] domain NDN11_06935 PF00392 Bacterial regulatory proteins, gntR family NDN11_06935 PF07702 UTRA domain NDN11_06940 PF05962 HutD NDN11_06945 PF17391 Urocanase N-terminal domain NDN11_06945 PF17392 Urocanase C-terminal domain NDN11_06945 PF01175 Urocanase Rossmann-like domain NDN11_06950 PF00221 Aromatic amino acid lyase NDN11_06955 PF00324 Amino acid permease NDN11_06960 PF01979 Amidohydrolase family NDN11_06965 PF00491 Arginase family NDN11_06970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN11_06970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN11_06985 PF12833 Helix-turn-helix domain NDN11_06985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_06995 PF00392 Bacterial regulatory proteins, gntR family NDN11_06995 PF00155 Aminotransferase class I and II NDN11_07000 PF02322 Cytochrome bd terminal oxidase subunit II NDN11_07005 PF01654 Cytochrome bd terminal oxidase subunit I NDN11_07020 PF00384 Molybdopterin oxidoreductase NDN11_07025 PF02634 FdhD/NarQ family NDN11_07030 PF04261 Dyp-type peroxidase family NDN11_07040 PF02321 Outer membrane efflux protein NDN11_07045 PF00873 AcrB/AcrD/AcrF family NDN11_07050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_07050 PF00529 HlyD membrane-fusion protein of T1SS NDN11_07055 PF00486 Transcriptional regulatory protein, C terminal NDN11_07055 PF00072 Response regulator receiver domain NDN11_07065 PF00512 His Kinase A (phospho-acceptor) domain NDN11_07065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_07065 PF00672 HAMP domain NDN11_07070 PF00296 Luciferase-like monooxygenase NDN11_07075 PF00248 Aldo/keto reductase family NDN11_07085 PF16868 NMT1-like family NDN11_07095 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_07110 PF00005 ABC transporter NDN11_07115 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_07125 PF00158 Sigma-54 interaction domain NDN11_07130 PF03459 TOBE domain NDN11_07135 PF00005 ABC transporter NDN11_07145 PF00440 Bacterial regulatory proteins, tetR family NDN11_07145 PF17932 Tetracyclin repressor-like, C-terminal domain NDN11_07160 PF00106 short chain dehydrogenase NDN11_07165 PF00743 Flavin-binding monooxygenase-like NDN11_07170 PF04072 Leucine carboxyl methyltransferase NDN11_07175 PF01435 Peptidase family M48 NDN11_07180 PF00027 Cyclic nucleotide-binding domain NDN11_07180 PF13545 Crp-like helix-turn-helix domain NDN11_07185 PF02566 OsmC-like protein NDN11_07195 PF02861 Clp amino terminal domain, pathogenicity island component NDN11_07195 PF17871 AAA lid domain NDN11_07195 PF07724 AAA domain (Cdc48 subfamily) NDN11_07195 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_07195 PF10431 C-terminal, D2-small domain, of ClpB protein NDN11_07205 PF01170 Putative RNA methylase family UPF0020 NDN11_07205 PF02926 THUMP domain NDN11_07205 PF10672 S-adenosylmethionine-dependent methyltransferase NDN11_07215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN11_07215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN11_07220 PF01979 Amidohydrolase family NDN11_07230 PF00691 OmpA family NDN11_07230 PF01389 OmpA-like transmembrane domain NDN11_07245 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN11_07245 PF04717 Type VI secretion system, phage-baseplate injector NDN11_07245 PF13296 Putative type VI secretion system Rhs element Vgr NDN11_07280 PF02390 Putative methyltransferase NDN11_07290 PF00043 Glutathione S-transferase, C-terminal domain NDN11_07290 PF02798 Glutathione S-transferase, N-terminal domain NDN11_07300 PF13192 Thioredoxin domain NDN11_07300 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_07320 PF00487 Fatty acid desaturase NDN11_07330 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN11_07330 PF00578 AhpC/TSA family NDN11_07335 PF04408 Helicase associated domain (HA2) NDN11_07335 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NDN11_07335 PF11898 Domain of unknown function (DUF3418) NDN11_07335 PF00270 DEAD/DEAH box helicase NDN11_07335 PF00271 Helicase conserved C-terminal domain NDN11_07340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDN11_07340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDN11_07350 PF04055 Radical SAM superfamily NDN11_07355 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_07355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN11_07370 PF05036 Sporulation related domain NDN11_07370 PF03330 Lytic transglycolase NDN11_07375 PF13406 Transglycosylase SLT domain NDN11_07380 PF01098 Cell cycle protein NDN11_07390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDN11_07390 PF14489 QueF-like protein NDN11_07395 PF01061 ABC-2 type transporter NDN11_07400 PF00005 ABC transporter NDN11_07430 PF00464 Serine hydroxymethyltransferase NDN11_07445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_07445 PF02785 Biotin carboxylase C-terminal domain NDN11_07445 PF00289 Biotin carboxylase, N-terminal domain NDN11_07450 PF01402 Ribbon-helix-helix protein, copG family NDN11_07450 PF08753 NikR C terminal nickel binding domain NDN11_07455 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_07470 PF00005 ABC transporter NDN11_07480 PF00037 4Fe-4S binding domain NDN11_07485 PF01136 Peptidase family U32 NDN11_07485 PF16325 Peptidase family U32 C-terminal domain NDN11_07495 PF05360 yiaA/B two helix domain NDN11_07500 PF03462 PCRF domain NDN11_07500 PF00472 RF-1 domain NDN11_07505 PF17827 PrmC N-terminal domain NDN11_07505 PF13847 Methyltransferase domain NDN11_07520 PF00106 short chain dehydrogenase NDN11_07530 PF01613 Flavin reductase like domain NDN11_07535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_07535 PF12833 Helix-turn-helix domain NDN11_07540 PF00561 alpha/beta hydrolase fold NDN11_07545 PF03280 Proteobacterial lipase chaperone protein NDN11_07555 PF00899 ThiF family NDN11_07560 PF03109 ABC1 family NDN11_07565 PF02152 Dihydroneopterin aldolase NDN11_07585 PF03232 Ubiquinone biosynthesis protein COQ7 NDN11_07590 PF07690 Major Facilitator Superfamily NDN11_07595 PF07244 Surface antigen variable number repeat NDN11_07595 PF17243 POTRA domain TamA domain 1 NDN11_07595 PF01103 Surface antigen NDN11_07620 PF00330 Aconitase family (aconitate hydratase) NDN11_07620 PF06434 Aconitate hydratase 2 N-terminus NDN11_07620 PF11791 Aconitate B N-terminal domain NDN11_07630 PF00939 Sodium:sulfate symporter transmembrane region NDN11_07635 PF00520 Ion transport protein NDN11_07635 PF00027 Cyclic nucleotide-binding domain NDN11_07640 PF01032 FecCD transport family NDN11_07645 PF01032 FecCD transport family NDN11_07650 PF00005 ABC transporter NDN11_07655 PF01497 Periplasmic binding protein NDN11_07660 PF09997 Predicted membrane protein (DUF2238) NDN11_07665 PF07690 Major Facilitator Superfamily NDN11_07675 PF02677 Epoxyqueuosine reductase QueH NDN11_07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_07680 PF03466 LysR substrate binding domain NDN11_07685 PF04284 Protein of unknown function (DUF441) NDN11_07700 PF00175 Oxidoreductase NAD-binding domain NDN11_07700 PF00970 Oxidoreductase FAD-binding domain NDN11_07705 PF18389 TrmO C-terminal domain NDN11_07705 PF01980 tRNA-methyltransferase O NDN11_07710 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN11_07710 PF00437 Type II/IV secretion system protein NDN11_07720 PF00072 Response regulator receiver domain NDN11_07720 PF00486 Transcriptional regulatory protein, C terminal NDN11_07725 PF00512 His Kinase A (phospho-acceptor) domain NDN11_07725 PF08521 Two-component sensor kinase N-terminal NDN11_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_07735 PF00293 NUDIX domain NDN11_07745 PF00912 Transglycosylase NDN11_07745 PF00905 Penicillin binding protein transpeptidase domain NDN11_07745 PF14814 Bifunctional transglycosylase second domain NDN11_07750 PF01513 ATP-NAD kinase NDN11_07755 PF07023 Protein of unknown function (DUF1315) NDN11_07760 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN11_07760 PF13296 Putative type VI secretion system Rhs element Vgr NDN11_07760 PF04717 Type VI secretion system, phage-baseplate injector NDN11_07760 PF04717 Type VI secretion system, phage-baseplate injector NDN11_07760 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN11_07760 PF13296 Putative type VI secretion system Rhs element Vgr NDN11_07775 PF02885 Glycosyl transferase family, helical bundle domain NDN11_07775 PF00591 Glycosyl transferase family, a/b domain NDN11_07780 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_07780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_07780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_07795 PF01842 ACT domain NDN11_07795 PF00800 Prephenate dehydratase NDN11_07795 PF01817 Chorismate mutase type II NDN11_07800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN11_07810 PF07687 Peptidase dimerisation domain NDN11_07810 PF01546 Peptidase family M20/M25/M40 NDN11_07815 PF01137 RNA 3'-terminal phosphate cyclase NDN11_07815 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NDN11_07830 PF01139 tRNA-splicing ligase RtcB NDN11_07835 PF00753 Metallo-beta-lactamase superfamily NDN11_07840 PF06956 Regulator of RNA terminal phosphate cyclase NDN11_07840 PF00158 Sigma-54 interaction domain NDN11_07855 PF03883 Peroxide stress protein YaaA NDN11_07875 PF05690 Thiazole biosynthesis protein ThiG NDN11_07885 PF04241 Protein of unknown function (DUF423) NDN11_07890 PF04545 Sigma-70, region 4 NDN11_07890 PF04542 Sigma-70 region 2 NDN11_07890 PF00140 Sigma-70 factor, region 1.2 NDN11_07900 PF00313 'Cold-shock' DNA-binding domain NDN11_07905 PF00270 DEAD/DEAH box helicase NDN11_07905 PF00271 Helicase conserved C-terminal domain NDN11_07910 PF01116 Fructose-bisphosphate aldolase class-II NDN11_07915 PF00639 PPIC-type PPIASE domain NDN11_07915 PF09312 SurA N-terminal domain NDN11_07920 PF03968 OstA-like protein NDN11_07920 PF04453 LPS transport system D NDN11_07925 PF01636 Phosphotransferase enzyme family NDN11_07930 PF00483 Nucleotidyl transferase NDN11_07935 PF02527 rRNA small subunit methyltransferase G NDN11_07940 PF13614 AAA domain NDN11_07945 PF17762 HTH domain found in ParB protein NDN11_07945 PF02195 ParB-like nuclease domain NDN11_07950 PF01618 MotA/TolQ/ExbB proton channel family NDN11_07960 PF00664 ABC transporter transmembrane region NDN11_07960 PF00005 ABC transporter NDN11_07965 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDN11_07970 PF02348 Cytidylyltransferase NDN11_07975 PF09115 DNA polymerase III, delta subunit, C terminal NDN11_07995 PF01026 TatD related DNase NDN11_08005 PF07963 Prokaryotic N-terminal methylation motif NDN11_08015 PF11612 Type II secretion system (T2SS), protein J NDN11_08015 PF07963 Prokaryotic N-terminal methylation motif NDN11_08020 PF03934 Type II secretion system (T2SS), protein K NDN11_08030 PF03167 Uracil DNA glycosylase superfamily NDN11_08040 PF14437 MafB19-like deaminase NDN11_08050 PF02224 Cytidylate kinase NDN11_08055 PF00575 S1 RNA binding domain NDN11_08060 PF00216 Bacterial DNA-binding protein NDN11_08085 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDN11_08090 PF03956 Lysine exporter LysO NDN11_08095 PF00440 Bacterial regulatory proteins, tetR family NDN11_08100 PF07690 Major Facilitator Superfamily NDN11_08105 PF00743 Flavin-binding monooxygenase-like NDN11_08115 PF03969 AFG1-like ATPase NDN11_08120 PF01274 Malate synthase NDN11_08155 PF05525 Branched-chain amino acid transport protein NDN11_08160 PF00557 Metallopeptidase family M24 NDN11_08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_08165 PF03466 LysR substrate binding domain NDN11_08170 PF13291 ACT domain NDN11_08170 PF04607 Region found in RelA / SpoT proteins NDN11_08170 PF02824 TGS domain NDN11_08180 PF00462 Glutaredoxin NDN11_08185 PF00202 Aminotransferase class-III NDN11_08190 PF00571 CBS domain NDN11_08215 PF02881 SRP54-type protein, helical bundle domain NDN11_08215 PF00448 SRP54-type protein, GTPase domain NDN11_08250 PF00593 TonB dependent receptor NDN11_08250 PF07715 TonB-dependent Receptor Plug Domain NDN11_08250 PF07660 Secretin and TonB N terminus short domain NDN11_08260 PF08173 Membrane bound YbgT-like protein NDN11_08265 PF02322 Cytochrome bd terminal oxidase subunit II NDN11_08270 PF01654 Cytochrome bd terminal oxidase subunit I NDN11_08290 PF00294 pfkB family carbohydrate kinase NDN11_08300 PF08367 Peptidase M16C associated NDN11_08300 PF00675 Insulinase (Peptidase family M16) NDN11_08300 PF05193 Peptidase M16 inactive domain NDN11_08305 PF02253 Phospholipase A1 NDN11_08315 PF02386 Cation transport protein NDN11_08320 PF02080 TrkA-C domain NDN11_08320 PF02254 TrkA-N domain NDN11_08325 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_08325 PF00585 C-terminal regulatory domain of Threonine dehydratase NDN11_08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDN11_08345 PF00245 Alkaline phosphatase NDN11_08355 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN11_08355 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN11_08365 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDN11_08370 PF02861 Clp amino terminal domain, pathogenicity island component NDN11_08370 PF17871 AAA lid domain NDN11_08370 PF10431 C-terminal, D2-small domain, of ClpB protein NDN11_08370 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_08370 PF07724 AAA domain (Cdc48 subfamily) NDN11_08375 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDN11_08380 PF12848 ABC transporter NDN11_08380 PF00005 ABC transporter NDN11_08380 PF16326 ABC transporter C-terminal domain NDN11_08385 PF00793 DAHP synthetase I family NDN11_08390 PF12697 Alpha/beta hydrolase family NDN11_08400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_08400 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_08425 PF06418 CTP synthase N-terminus NDN11_08425 PF00117 Glutamine amidotransferase class-I NDN11_08430 PF00793 DAHP synthetase I family NDN11_08435 PF00113 Enolase, C-terminal TIM barrel domain NDN11_08435 PF03952 Enolase, N-terminal domain NDN11_08440 PF04977 Septum formation initiator NDN11_08445 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDN11_08465 PF04143 Sulphur transport NDN11_08475 PF00753 Metallo-beta-lactamase superfamily NDN11_08490 PF00296 Luciferase-like monooxygenase NDN11_08505 PF12833 Helix-turn-helix domain NDN11_08510 PF01810 LysE type translocator NDN11_08540 PF13091 PLD-like domain NDN11_08545 PF02583 Metal-sensitive transcriptional repressor NDN11_08550 PF00107 Zinc-binding dehydrogenase NDN11_08550 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_08555 PF03459 TOBE domain NDN11_08560 PF01425 Amidase NDN11_08565 PF02785 Biotin carboxylase C-terminal domain NDN11_08565 PF00289 Biotin carboxylase, N-terminal domain NDN11_08565 PF00364 Biotin-requiring enzyme NDN11_08565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_08570 PF07729 FCD domain NDN11_08570 PF00392 Bacterial regulatory proteins, gntR family NDN11_08580 PF06719 AraC-type transcriptional regulator N-terminus NDN11_08580 PF12833 Helix-turn-helix domain NDN11_08585 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_08585 PF00107 Zinc-binding dehydrogenase NDN11_08590 PF01965 DJ-1/PfpI family NDN11_08595 PF00072 Response regulator receiver domain NDN11_08595 PF00486 Transcriptional regulatory protein, C terminal NDN11_08600 PF02558 Ketopantoate reductase PanE/ApbA NDN11_08600 PF08546 Ketopantoate reductase PanE/ApbA C terminal NDN11_08610 PF13533 Biotin-lipoyl like NDN11_08615 PF07690 Major Facilitator Superfamily NDN11_08650 PF00892 EamA-like transporter family NDN11_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_08655 PF03466 LysR substrate binding domain NDN11_08660 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NDN11_08660 PF18381 YcaO cyclodehydratase C-terminal domain NDN11_08670 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_08680 PF00376 MerR family regulatory protein NDN11_08680 PF09278 MerR, DNA binding NDN11_08685 PF00403 Heavy-metal-associated domain NDN11_08690 PF00743 Flavin-binding monooxygenase-like NDN11_08700 PF00196 Bacterial regulatory proteins, luxR family NDN11_08705 PF01425 Amidase NDN11_08710 PF01447 Thermolysin metallopeptidase, catalytic domain NDN11_08710 PF04389 Peptidase family M28 NDN11_08710 PF02868 Thermolysin metallopeptidase, alpha-helical domain NDN11_08720 PF00512 His Kinase A (phospho-acceptor) domain NDN11_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_08720 PF00672 HAMP domain NDN11_08725 PF00486 Transcriptional regulatory protein, C terminal NDN11_08725 PF00072 Response regulator receiver domain NDN11_08740 PF05114 Protein of unknown function (DUF692) NDN11_08750 PF04542 Sigma-70 region 2 NDN11_08750 PF08281 Sigma-70, region 4 NDN11_08790 PF08521 Two-component sensor kinase N-terminal NDN11_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_08790 PF00512 His Kinase A (phospho-acceptor) domain NDN11_08795 PF00072 Response regulator receiver domain NDN11_08795 PF00486 Transcriptional regulatory protein, C terminal NDN11_08825 PF03435 Saccharopine dehydrogenase NADP binding domain NDN11_08835 PF00561 alpha/beta hydrolase fold NDN11_08840 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_08840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_08855 PF13411 MerR HTH family regulatory protein NDN11_08865 PF02525 Flavodoxin-like fold NDN11_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_08870 PF03466 LysR substrate binding domain NDN11_08875 PF08281 Sigma-70, region 4 NDN11_08875 PF04542 Sigma-70 region 2 NDN11_08885 PF07715 TonB-dependent Receptor Plug Domain NDN11_08885 PF00593 TonB dependent receptor NDN11_08895 PF04575 Protein of unknown function (DUF560) NDN11_08905 PF01126 Heme oxygenase NDN11_08925 PF07690 Major Facilitator Superfamily NDN11_08935 PF12833 Helix-turn-helix domain NDN11_08935 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_08945 PF02322 Cytochrome bd terminal oxidase subunit II NDN11_08950 PF01654 Cytochrome bd terminal oxidase subunit I NDN11_08995 PF02798 Glutathione S-transferase, N-terminal domain NDN11_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_09000 PF03466 LysR substrate binding domain NDN11_09005 PF03788 LrgA family NDN11_09010 PF04172 LrgB-like family NDN11_09015 PF07715 TonB-dependent Receptor Plug Domain NDN11_09015 PF00593 TonB dependent receptor NDN11_09020 PF00593 TonB dependent receptor NDN11_09020 PF07715 TonB-dependent Receptor Plug Domain NDN11_09035 PF01593 Flavin containing amine oxidoreductase NDN11_09045 PF07859 alpha/beta hydrolase fold NDN11_09050 PF00561 alpha/beta hydrolase fold NDN11_09060 PF00440 Bacterial regulatory proteins, tetR family NDN11_09065 PF08281 Sigma-70, region 4 NDN11_09065 PF04542 Sigma-70 region 2 NDN11_09075 PF07715 TonB-dependent Receptor Plug Domain NDN11_09075 PF00593 TonB dependent receptor NDN11_09095 PF00296 Luciferase-like monooxygenase NDN11_09100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN11_09105 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_09110 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_09110 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN11_09115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN11_09115 PF00005 ABC transporter NDN11_09120 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_09120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN11_09120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_09130 PF00664 ABC transporter transmembrane region NDN11_09130 PF00005 ABC transporter NDN11_09135 PF00005 ABC transporter NDN11_09135 PF00664 ABC transporter transmembrane region NDN11_09145 PF00593 TonB dependent receptor NDN11_09145 PF07715 TonB-dependent Receptor Plug Domain NDN11_09155 PF00296 Luciferase-like monooxygenase NDN11_09160 PF00158 Sigma-54 interaction domain NDN11_09165 PF00902 Sec-independent protein translocase protein (TatC) NDN11_09170 PF02416 mttA/Hcf106 family NDN11_09175 PF02416 mttA/Hcf106 family NDN11_09180 PF00005 ABC transporter NDN11_09185 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_09190 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_09200 PF00296 Luciferase-like monooxygenase NDN11_09205 PF03544 Gram-negative bacterial TonB protein C-terminal NDN11_09210 PF01618 MotA/TolQ/ExbB proton channel family NDN11_09215 PF02472 Biopolymer transport protein ExbD/TolR NDN11_09220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN11_09230 PF07715 TonB-dependent Receptor Plug Domain NDN11_09230 PF00593 TonB dependent receptor NDN11_09235 PF00296 Luciferase-like monooxygenase NDN11_09240 PF03358 NADPH-dependent FMN reductase NDN11_09245 PF03466 LysR substrate binding domain NDN11_09245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_09260 PF09905 DNA-binding protein VF530 NDN11_09280 PF02463 RecF/RecN/SMC N terminal domain NDN11_09285 PF12705 PD-(D/E)XK nuclease superfamily NDN11_09285 PF00580 UvrD/REP helicase N-terminal domain NDN11_09285 PF13361 UvrD-like helicase C-terminal domain NDN11_09395 PF01066 CDP-alcohol phosphatidyltransferase NDN11_09400 PF12146 Serine aminopeptidase, S33 NDN11_09400 PF12147 Putative methyltransferase NDN11_09405 PF00782 Dual specificity phosphatase, catalytic domain NDN11_09425 PF12833 Helix-turn-helix domain NDN11_09430 PF02525 Flavodoxin-like fold NDN11_09440 PF16220 Domain of unknown function (DUF4880) NDN11_09440 PF04773 FecR protein NDN11_09445 PF04542 Sigma-70 region 2 NDN11_09445 PF08281 Sigma-70, region 4 NDN11_09455 PF05506 Domain of unknown function (DUF756) NDN11_09455 PF04185 Phosphoesterase family NDN11_09465 PF00990 Diguanylate cyclase, GGDEF domain NDN11_09470 PF01264 Chorismate synthase NDN11_09475 PF05175 Methyltransferase small domain NDN11_09480 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_09490 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_09490 PF17862 AAA+ lid domain NDN11_09490 PF01434 Peptidase family M41 NDN11_09500 PF05166 YcgL domain NDN11_09505 PF01612 3'-5' exonuclease NDN11_09505 PF00570 HRDC domain NDN11_09510 PF02132 RecR protein NDN11_09510 PF13662 Toprim domain NDN11_09515 PF02575 YbaB/EbfC DNA-binding family NDN11_09520 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN11_09530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN11_09530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN11_09545 PF00857 Isochorismatase family NDN11_09560 PF00893 Small Multidrug Resistance protein NDN11_09565 PF00959 Phage lysozyme NDN11_09580 PF01230 HIT domain NDN11_09605 PF02684 Lipid-A-disaccharide synthetase NDN11_09635 PF01925 Sulfite exporter TauE/SafE NDN11_09640 PF00793 DAHP synthetase I family NDN11_09645 PF00719 Inorganic pyrophosphatase NDN11_09660 PF00593 TonB dependent receptor NDN11_09660 PF07715 TonB-dependent Receptor Plug Domain NDN11_09670 PF02654 Cobalamin-5-phosphate synthase NDN11_09685 PF02277 Phosphoribosyltransferase NDN11_09690 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NDN11_09700 PF13419 Haloacid dehalogenase-like hydrolase NDN11_09710 PF00593 TonB dependent receptor NDN11_09710 PF07715 TonB-dependent Receptor Plug Domain NDN11_09715 PF07690 Major Facilitator Superfamily NDN11_09730 PF06276 Ferric iron reductase FhuF-like transporter NDN11_09730 PF04183 IucA / IucC family NDN11_09735 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN11_09740 PF06276 Ferric iron reductase FhuF-like transporter NDN11_09740 PF04183 IucA / IucC family NDN11_09745 PF04073 Aminoacyl-tRNA editing domain NDN11_09755 PF03109 ABC1 family NDN11_09760 PF01494 FAD binding domain NDN11_09765 PF01614 Bacterial transcriptional regulator NDN11_09765 PF09339 IclR helix-turn-helix domain NDN11_09770 PF00171 Aldehyde dehydrogenase family NDN11_09775 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_09780 PF07848 PaaX-like protein NDN11_09780 PF08223 PaaX-like protein C-terminal domain NDN11_09785 PF00501 AMP-binding enzyme NDN11_09785 PF14535 AMP-binding enzyme C-terminal domain NDN11_09790 PF00108 Thiolase, N-terminal domain NDN11_09790 PF02803 Thiolase, C-terminal domain NDN11_09795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN11_09795 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN11_09795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN11_09800 PF00378 Enoyl-CoA hydratase/isomerase NDN11_09805 PF00378 Enoyl-CoA hydratase/isomerase NDN11_09810 PF00970 Oxidoreductase FAD-binding domain NDN11_09810 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_09810 PF00175 Oxidoreductase NAD-binding domain NDN11_09815 PF01883 Iron-sulfur cluster assembly protein NDN11_09820 PF05138 Phenylacetic acid catabolic protein NDN11_09825 PF06243 Phenylacetic acid degradation B NDN11_09830 PF05138 Phenylacetic acid catabolic protein NDN11_09835 PF00171 Aldehyde dehydrogenase family NDN11_09835 PF01575 MaoC like domain NDN11_09845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_09845 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_09845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_09850 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_09855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN11_09860 PF00487 Fatty acid desaturase NDN11_09865 PF12833 Helix-turn-helix domain NDN11_09865 PF12852 Cupin NDN11_09870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDN11_09870 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_09875 PF07977 FabA-like domain NDN11_09880 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_09880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDN11_09890 PF01103 Surface antigen NDN11_09890 PF07244 Surface antigen variable number repeat NDN11_09895 PF13180 PDZ domain NDN11_09895 PF17820 PDZ domain NDN11_09895 PF02163 Peptidase family M50 NDN11_09900 PF13288 DXP reductoisomerase C-terminal domain NDN11_09900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDN11_09900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDN11_09910 PF01255 Putative undecaprenyl diphosphate synthase NDN11_09915 PF01765 Ribosome recycling factor NDN11_09920 PF00696 Amino acid kinase family NDN11_09925 PF00919 Uncharacterized protein family UPF0004 NDN11_09925 PF18693 TRAM domain NDN11_09925 PF04055 Radical SAM superfamily NDN11_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_09930 PF00512 His Kinase A (phospho-acceptor) domain NDN11_09930 PF00989 PAS fold NDN11_09935 PF02954 Bacterial regulatory protein, Fis family NDN11_09935 PF00072 Response regulator receiver domain NDN11_09935 PF00158 Sigma-54 interaction domain NDN11_09940 PF00440 Bacterial regulatory proteins, tetR family NDN11_09945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN11_09945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN11_09955 PF02542 YgbB family NDN11_09965 PF01266 FAD dependent oxidoreductase NDN11_09980 PF00206 Lyase NDN11_09980 PF10415 Fumarase C C-terminus NDN11_09985 PF16363 GDP-mannose 4,6 dehydratase NDN11_09990 PF02635 DsrE/DsrF-like family NDN11_10005 PF04358 DsrC like protein NDN11_10010 PF00892 EamA-like transporter family NDN11_10015 PF00392 Bacterial regulatory proteins, gntR family NDN11_10015 PF00155 Aminotransferase class I and II NDN11_10020 PF01638 HxlR-like helix-turn-helix NDN11_10025 PF00994 Probable molybdopterin binding domain NDN11_10025 PF03454 MoeA C-terminal region (domain IV) NDN11_10025 PF03453 MoeA N-terminal region (domain I and II) NDN11_10030 PF01967 MoaC family NDN11_10030 PF00994 Probable molybdopterin binding domain NDN11_10035 PF02391 MoaE protein NDN11_10045 PF04055 Radical SAM superfamily NDN11_10045 PF06463 Molybdenum Cofactor Synthesis C NDN11_10050 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN11_10050 PF00384 Molybdopterin oxidoreductase NDN11_10050 PF01568 Molydopterin dinucleotide binding domain NDN11_10060 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_10065 PF03466 LysR substrate binding domain NDN11_10070 PF06779 Uncharacterised MFS-type transporter YbfB NDN11_10075 PF12804 MobA-like NTP transferase domain NDN11_10080 PF01568 Molydopterin dinucleotide binding domain NDN11_10080 PF00384 Molybdopterin oxidoreductase NDN11_10080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN11_10080 PF04324 BFD-like [2Fe-2S] binding domain NDN11_10085 PF04324 BFD-like [2Fe-2S] binding domain NDN11_10085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN11_10085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN11_10085 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_10085 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN11_10090 PF04324 BFD-like [2Fe-2S] binding domain NDN11_10090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN11_10090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN11_10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_10090 PF13806 Rieske-like [2Fe-2S] domain NDN11_10090 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN11_10095 PF07690 Major Facilitator Superfamily NDN11_10105 PF00005 ABC transporter NDN11_10110 PF01220 Dehydroquinase class II NDN11_10115 PF00364 Biotin-requiring enzyme NDN11_10120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_10120 PF02785 Biotin carboxylase C-terminal domain NDN11_10120 PF00289 Biotin carboxylase, N-terminal domain NDN11_10130 PF01425 Amidase NDN11_10135 PF12832 MFS_1 like family NDN11_10140 PF00324 Amino acid permease NDN11_10150 PF14497 Glutathione S-transferase, C-terminal domain NDN11_10150 PF02798 Glutathione S-transferase, N-terminal domain NDN11_10165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN11_10175 PF01645 Conserved region in glutamate synthase NDN11_10205 PF01565 FAD binding domain NDN11_10205 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDN11_10210 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN11_10250 PF00465 Iron-containing alcohol dehydrogenase NDN11_10255 PF03061 Thioesterase superfamily NDN11_10260 PF12170 DNA polymerase III tau subunit V interacting with alpha NDN11_10260 PF12169 DNA polymerase III subunits gamma and tau domain III NDN11_10260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDN11_10265 PF08007 Cupin superfamily protein NDN11_10290 PF01740 STAS domain NDN11_10290 PF00916 Sulfate permease family NDN11_10295 PF00375 Sodium:dicarboxylate symporter family NDN11_10305 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NDN11_10310 PF00924 Mechanosensitive ion channel NDN11_10360 PF03616 Sodium/glutamate symporter NDN11_10380 PF00005 ABC transporter NDN11_10380 PF00664 ABC transporter transmembrane region NDN11_10385 PF01575 MaoC like domain NDN11_10390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN11_10390 PF12833 Helix-turn-helix domain NDN11_10395 PF01597 Glycine cleavage H-protein NDN11_10400 PF18416 N-acetylglucosamine binding protein domain 2 NDN11_10400 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NDN11_10405 PF10415 Fumarase C C-terminus NDN11_10405 PF00206 Lyase NDN11_10410 PF00474 Sodium:solute symporter family NDN11_10415 PF01037 Lrp/AsnC ligand binding domain NDN11_10420 PF00171 Aldehyde dehydrogenase family NDN11_10420 PF01619 Proline dehydrogenase NDN11_10420 PF14850 DNA-binding domain of Proline dehydrogenase NDN11_10420 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NDN11_10425 PF04229 GrpB protein NDN11_10430 PF05958 tRNA (Uracil-5-)-methyltransferase NDN11_10440 PF09992 Phosphodiester glycosidase NDN11_10450 PF09857 Putative toxin of bacterial toxin-antitoxin pair NDN11_10485 PF01726 LexA DNA binding domain NDN11_10485 PF00717 Peptidase S24-like NDN11_10490 PF04264 YceI-like domain NDN11_10510 PF02779 Transketolase, pyrimidine binding domain NDN11_10510 PF02780 Transketolase, C-terminal domain NDN11_10510 PF00456 Transketolase, thiamine diphosphate binding domain NDN11_10515 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDN11_10515 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDN11_10515 PF02772 S-adenosylmethionine synthetase, central domain NDN11_10535 PF03891 Domain of unknown function (DUF333) NDN11_10545 PF01266 FAD dependent oxidoreductase NDN11_10550 PF00313 'Cold-shock' DNA-binding domain NDN11_10555 PF00313 'Cold-shock' DNA-binding domain NDN11_10570 PF02075 Crossover junction endodeoxyribonuclease RuvC NDN11_10575 PF01256 Carbohydrate kinase NDN11_10575 PF03853 YjeF-related protein N-terminus NDN11_10580 PF08331 Domain of unknown function (DUF1730) NDN11_10585 PF06968 Biotin and Thiamin Synthesis associated domain NDN11_10585 PF04055 Radical SAM superfamily NDN11_10600 PF16970 Type-1 fimbrial protein, A NDN11_10605 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN11_10605 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN11_10610 PF13953 PapC C-terminal domain NDN11_10610 PF13954 PapC N-terminal domain NDN11_10610 PF00577 Outer membrane usher protein NDN11_10615 PF09160 FimH, mannose binding NDN11_10630 PF18417 L-lysine epsilon oxidase C-terminal domain NDN11_10630 PF17990 L-Lysine epsilon oxidase N-terminal NDN11_10640 PF00199 Catalase NDN11_10725 PF00857 Isochorismatase family NDN11_10750 PF01709 Transcriptional regulator NDN11_10765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN11_10765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_10775 PF00296 Luciferase-like monooxygenase NDN11_10780 PF03180 NLPA lipoprotein NDN11_10785 PF00005 ABC transporter NDN11_10785 PF09383 NIL domain NDN11_10790 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_10795 PF01926 50S ribosome-binding GTPase NDN11_10795 PF06071 Protein of unknown function (DUF933) NDN11_10800 PF12833 Helix-turn-helix domain NDN11_10800 PF02311 AraC-like ligand binding domain NDN11_10815 PF00027 Cyclic nucleotide-binding domain NDN11_10815 PF13545 Crp-like helix-turn-helix domain NDN11_10830 PF01361 Tautomerase enzyme NDN11_10835 PF02222 ATP-grasp domain NDN11_10840 PF08335 GlnD PII-uridylyltransferase NDN11_10840 PF01909 Nucleotidyltransferase domain NDN11_10840 PF01966 HD domain NDN11_10845 PF00155 Aminotransferase class I and II NDN11_10850 PF07715 TonB-dependent Receptor Plug Domain NDN11_10850 PF00593 TonB dependent receptor NDN11_10860 PF01037 Lrp/AsnC ligand binding domain NDN11_10865 PF13533 Biotin-lipoyl like NDN11_10870 PF00873 AcrB/AcrD/AcrF family NDN11_10875 PF01810 LysE type translocator NDN11_10885 PF00255 Glutathione peroxidase NDN11_10890 PF01641 SelR domain NDN11_10895 PF00155 Aminotransferase class I and II NDN11_10905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDN11_10905 PF14579 Helix-hairpin-helix motif NDN11_10905 PF02811 PHP domain NDN11_10905 PF01336 OB-fold nucleic acid binding domain NDN11_10905 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDN11_10910 PF00588 SpoU rRNA Methylase family NDN11_10915 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_10930 PF13192 Thioredoxin domain NDN11_10930 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_10940 PF05816 Toxic anion resistance protein (TelA) NDN11_10970 PF02673 Bacitracin resistance protein BacA NDN11_10980 PF00156 Phosphoribosyl transferase domain NDN11_10985 PF02674 Colicin V production protein NDN11_10990 PF01180 Dihydroorotate dehydrogenase NDN11_11010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN11_11010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN11_11015 PF00881 Nitroreductase family NDN11_11030 PF00162 Phosphoglycerate kinase NDN11_11040 PF02545 Maf-like protein NDN11_11050 PF07690 Major Facilitator Superfamily NDN11_11065 PF00144 Beta-lactamase NDN11_11080 PF00108 Thiolase, N-terminal domain NDN11_11080 PF02803 Thiolase, C-terminal domain NDN11_11095 PF03737 Aldolase/RraA NDN11_11100 PF13460 NAD(P)H-binding NDN11_11105 PF01649 Ribosomal protein S20 NDN11_11115 PF00041 Fibronectin type III domain NDN11_11115 PF12561 ToxR activated gene A lipoprotein domain NDN11_11125 PF00459 Inositol monophosphatase family NDN11_11130 PF13419 Haloacid dehalogenase-like hydrolase NDN11_11135 PF01479 S4 domain NDN11_11140 PF00154 recA bacterial DNA recombination protein NDN11_11145 PF02631 RecX family NDN11_11165 PF00216 Bacterial DNA-binding protein NDN11_11180 PF02082 Transcriptional regulator NDN11_11185 PF00266 Aminotransferase class-V NDN11_11190 PF01592 NifU-like N terminal domain NDN11_11195 PF01521 Iron-sulphur cluster biosynthesis NDN11_11200 PF07743 HSCB C-terminal oligomerisation domain NDN11_11200 PF00226 DnaJ domain NDN11_11205 PF00012 Hsp70 protein NDN11_11210 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_11220 PF00211 Adenylate and Guanylate cyclase catalytic domain NDN11_11230 PF02559 CarD-like/TRCF domain NDN11_11230 PF00270 DEAD/DEAH box helicase NDN11_11230 PF00271 Helicase conserved C-terminal domain NDN11_11230 PF03461 TRCF domain NDN11_11230 PF17757 UvrB interaction domain NDN11_11245 PF03466 LysR substrate binding domain NDN11_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_11250 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDN11_11255 PF01810 LysE type translocator NDN11_11260 PF03594 Benzoate membrane transport protein NDN11_11265 PF02254 TrkA-N domain NDN11_11265 PF00999 Sodium/hydrogen exchanger family NDN11_11270 PF02308 MgtC family NDN11_11290 PF11940 Domain of unknown function (DUF3458) Ig-like fold NDN11_11290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NDN11_11290 PF01433 Peptidase family M1 domain NDN11_11320 PF02110 Hydroxyethylthiazole kinase family NDN11_11325 PF07690 Major Facilitator Superfamily NDN11_11330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN11_11340 PF03466 LysR substrate binding domain NDN11_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_11350 PF00205 Thiamine pyrophosphate enzyme, central domain NDN11_11350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN11_11350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN11_11355 PF00171 Aldehyde dehydrogenase family NDN11_11360 PF03447 Homoserine dehydrogenase, NAD binding domain NDN11_11360 PF01958 Domain of unknown function DUF108 NDN11_11370 PF12697 Alpha/beta hydrolase family NDN11_11380 PF07690 Major Facilitator Superfamily NDN11_11385 PF14759 Reductase C-terminal NDN11_11385 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_11390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN11_11400 PF00355 Rieske [2Fe-2S] domain NDN11_11410 PF00355 Rieske [2Fe-2S] domain NDN11_11415 PF09339 IclR helix-turn-helix domain NDN11_11415 PF01614 Bacterial transcriptional regulator NDN11_11420 PF00106 short chain dehydrogenase NDN11_11435 PF01037 Lrp/AsnC ligand binding domain NDN11_11440 PF00892 EamA-like transporter family NDN11_11445 PF07690 Major Facilitator Superfamily NDN11_11460 PF04055 Radical SAM superfamily NDN11_11460 PF06968 Biotin and Thiamin Synthesis associated domain NDN11_11465 PF00501 AMP-binding enzyme NDN11_11465 PF13193 AMP-binding enzyme C-terminal domain NDN11_11470 PF00440 Bacterial regulatory proteins, tetR family NDN11_11475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_11475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_11475 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_11480 PF01039 Carboxyl transferase domain NDN11_11485 PF00378 Enoyl-CoA hydratase/isomerase NDN11_11490 PF00289 Biotin carboxylase, N-terminal domain NDN11_11490 PF02785 Biotin carboxylase C-terminal domain NDN11_11490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_11490 PF00364 Biotin-requiring enzyme NDN11_11490 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN11_11495 PF00682 HMGL-like NDN11_11500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_11500 PF03466 LysR substrate binding domain NDN11_11510 PF06224 Winged helix DNA-binding domain NDN11_11515 PF02311 AraC-like ligand binding domain NDN11_11515 PF12833 Helix-turn-helix domain NDN11_11520 PF07690 Major Facilitator Superfamily NDN11_11525 PF07690 Major Facilitator Superfamily NDN11_11545 PF07690 Major Facilitator Superfamily NDN11_11550 PF01638 HxlR-like helix-turn-helix NDN11_11565 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_11570 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_11575 PF00005 ABC transporter NDN11_11580 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_11585 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_11610 PF00324 Amino acid permease NDN11_11615 PF02601 Exonuclease VII, large subunit NDN11_11615 PF13742 OB-fold nucleic acid binding domain NDN11_11625 PF01323 DSBA-like thioredoxin domain NDN11_11630 PF08019 Phosphoethanolamine transferase EptA/EptB NDN11_11630 PF00884 Sulfatase NDN11_11635 PF02705 K+ potassium transporter NDN11_11650 PF01872 RibD C-terminal domain NDN11_11655 PF00813 FliP family NDN11_11665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NDN11_11675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN11_11675 PF07559 Flagellar basal body protein FlaE NDN11_11675 PF00460 Flagella basal body rod protein NDN11_11680 PF03963 Flagellar hook capping protein - N-terminal region NDN11_11695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN11_11695 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN11_11695 PF18269 T3SS EscN ATPase C-terminal domain NDN11_11710 PF01514 Secretory protein of YscJ/FliF family NDN11_11710 PF08345 Flagellar M-ring protein C-terminal NDN11_11715 PF02049 Flagellar hook-basal body complex protein FliE NDN11_11720 PF00460 Flagella basal body rod protein NDN11_11720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN11_11725 PF00460 Flagella basal body rod protein NDN11_11730 PF02119 Flagellar P-ring protein NDN11_11735 PF02107 Flagellar L-ring protein NDN11_11745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN11_11745 PF00460 Flagella basal body rod protein NDN11_11755 PF00771 FHIPEP family NDN11_11760 PF01312 FlhB HrpN YscU SpaS Family NDN11_11765 PF01311 Bacterial export proteins, family 1 NDN11_11770 PF01313 Bacterial export proteins, family 3 NDN11_11790 PF01476 LysM domain NDN11_11790 PF00756 Putative esterase NDN11_11800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_11800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_11805 PF00892 EamA-like transporter family NDN11_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_11810 PF03466 LysR substrate binding domain NDN11_11820 PF00764 Arginosuccinate synthase NDN11_11825 PF02678 Pirin NDN11_11825 PF17954 Quercetinase C-terminal cupin domain NDN11_11855 PF11992 Domain of unknown function (DUF3488) NDN11_11855 PF13559 Domain of unknown function (DUF4129) NDN11_11855 PF01841 Transglutaminase-like superfamily NDN11_11865 PF07726 ATPase family associated with various cellular activities (AAA) NDN11_11865 PF17863 AAA lid domain NDN11_11870 PF04328 Selenoprotein, putative NDN11_11875 PF02554 Carbon starvation protein CstA NDN11_11875 PF13722 5TM C-terminal transporter carbon starvation CstA NDN11_11880 PF01132 Elongation factor P (EF-P) OB domain NDN11_11880 PF08207 Elongation factor P (EF-P) KOW-like domain NDN11_11880 PF09285 Elongation factor P, C-terminal NDN11_11885 PF04055 Radical SAM superfamily NDN11_11900 PF01197 Ribosomal protein L31 NDN11_11905 PF13593 SBF-like CPA transporter family (DUF4137) NDN11_11910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN11_11915 PF07690 Major Facilitator Superfamily NDN11_11920 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN11_11920 PF13654 AAA domain NDN11_11925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_11925 PF03466 LysR substrate binding domain NDN11_11930 PF01476 LysM domain NDN11_11930 PF01551 Peptidase family M23 NDN11_11935 PF01975 Survival protein SurE NDN11_11955 PF07943 Penicillin-binding protein 5, C-terminal domain NDN11_11955 PF00768 D-alanyl-D-alanine carboxypeptidase NDN11_11960 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_11970 PF00293 NUDIX domain NDN11_11980 PF04356 Protein of unknown function (DUF489) NDN11_11985 PF08328 Adenylosuccinate lyase C-terminal NDN11_11985 PF00206 Lyase NDN11_12005 PF05257 CHAP domain NDN11_12005 PF01476 LysM domain NDN11_12015 PF00324 Amino acid permease NDN11_12020 PF04958 Arginine N-succinyltransferase beta subunit NDN11_12045 PF00069 Protein kinase domain NDN11_12045 PF03793 PASTA domain NDN11_12080 PF00892 EamA-like transporter family NDN11_12105 PF00814 Glycoprotease family NDN11_12110 PF01165 Ribosomal protein S21 NDN11_12115 PF09424 Yqey-like protein NDN11_12130 PF13302 Acetyltransferase (GNAT) domain NDN11_12135 PF01435 Peptidase family M48 NDN11_12140 PF01553 Acyltransferase NDN11_12145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN11_12145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN11_12155 PF12706 Beta-lactamase superfamily domain NDN11_12165 PF02525 Flavodoxin-like fold NDN11_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_12170 PF03466 LysR substrate binding domain NDN11_12175 PF00106 short chain dehydrogenase NDN11_12180 PF00106 short chain dehydrogenase NDN11_12185 PF12146 Serine aminopeptidase, S33 NDN11_12190 PF12146 Serine aminopeptidase, S33 NDN11_12195 PF12833 Helix-turn-helix domain NDN11_12195 PF06719 AraC-type transcriptional regulator N-terminus NDN11_12200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_12205 PF12833 Helix-turn-helix domain NDN11_12205 PF06719 AraC-type transcriptional regulator N-terminus NDN11_12210 PF13438 Domain of unknown function (DUF4113) NDN11_12210 PF00817 impB/mucB/samB family NDN11_12210 PF11799 impB/mucB/samB family C-terminal domain NDN11_12215 PF00717 Peptidase S24-like NDN11_12245 PF07715 TonB-dependent Receptor Plug Domain NDN11_12245 PF00593 TonB dependent receptor NDN11_12255 PF00289 Biotin carboxylase, N-terminal domain NDN11_12255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_12255 PF00364 Biotin-requiring enzyme NDN11_12255 PF02785 Biotin carboxylase C-terminal domain NDN11_12265 PF07286 Protein of unknown function (DUF1445) NDN11_12270 PF03746 LamB/YcsF family NDN11_12275 PF01566 Natural resistance-associated macrophage protein NDN11_12280 PF03466 LysR substrate binding domain NDN11_12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_12290 PF03741 Integral membrane protein TerC family NDN11_12290 PF03471 Transporter associated domain NDN11_12295 PF05190 MutS family domain IV NDN11_12295 PF05192 MutS domain III NDN11_12295 PF01624 MutS domain I NDN11_12295 PF05188 MutS domain II NDN11_12295 PF00488 MutS domain V NDN11_12305 PF00037 4Fe-4S binding domain NDN11_12305 PF11953 Domain of unknown function (DUF3470) NDN11_12315 PF01596 O-methyltransferase NDN11_12325 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_12330 PF01205 Uncharacterized protein family UPF0029 NDN11_12340 PF00664 ABC transporter transmembrane region NDN11_12340 PF00005 ABC transporter NDN11_12340 PF03412 Peptidase C39 family NDN11_12345 PF02321 Outer membrane efflux protein NDN11_12350 PF00005 ABC transporter NDN11_12350 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN11_12355 PF03968 OstA-like protein NDN11_12370 PF00571 CBS domain NDN11_12370 PF01380 SIS domain NDN11_12380 PF09190 DALR domain NDN11_12380 PF01406 tRNA synthetases class I (C) catalytic domain NDN11_12390 PF00444 Ribosomal protein L36 NDN11_12395 PF04170 NlpE N-terminal domain NDN11_12395 PF17185 NlpE C-terminal OB domain NDN11_12400 PF00889 Elongation factor TS NDN11_12405 PF00318 Ribosomal protein S2 NDN11_12410 PF00557 Metallopeptidase family M24 NDN11_12420 PF07690 Major Facilitator Superfamily NDN11_12440 PF13180 PDZ domain NDN11_12440 PF17820 PDZ domain NDN11_12445 PF01784 NIF3 (NGG1p interacting factor 3) NDN11_12450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN11_12450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN11_12455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN11_12455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN11_12460 PF00463 Isocitrate lyase family NDN11_12465 PF03466 LysR substrate binding domain NDN11_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_12470 PF01595 Cyclin M transmembrane N-terminal domain NDN11_12470 PF00571 CBS domain NDN11_12470 PF03471 Transporter associated domain NDN11_12475 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN11_12475 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN11_12495 PF00009 Elongation factor Tu GTP binding domain NDN11_12500 PF01507 Phosphoadenosine phosphosulfate reductase family NDN11_12505 PF14052 Capsule assembly protein Wzi NDN11_12515 PF01336 OB-fold nucleic acid binding domain NDN11_12515 PF00152 tRNA synthetases class II (D, K and N) NDN11_12525 PF00301 Rubredoxin NDN11_12530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_12530 PF18113 Rubredoxin binding C-terminal domain NDN11_12535 PF00561 alpha/beta hydrolase fold NDN11_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_12540 PF03466 LysR substrate binding domain NDN11_12545 PF01207 Dihydrouridine synthase (Dus) NDN11_12550 PF07759 Protein of unknown function (DUF1615) NDN11_12560 PF00696 Amino acid kinase family NDN11_12560 PF01472 PUA domain NDN11_12565 PF01018 GTP1/OBG NDN11_12565 PF01926 50S ribosome-binding GTPase NDN11_12585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN11_12585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN11_12605 PF00271 Helicase conserved C-terminal domain NDN11_12605 PF04851 Type III restriction enzyme, res subunit NDN11_12605 PF17757 UvrB interaction domain NDN11_12605 PF12344 Ultra-violet resistance protein B NDN11_12605 PF02151 UvrB/uvrC motif NDN11_12620 PF00155 Aminotransferase class I and II NDN11_12665 PF01040 UbiA prenyltransferase family NDN11_12670 PF04345 Chorismate lyase NDN11_12675 PF00120 Glutamine synthetase, catalytic domain NDN11_12675 PF03951 Glutamine synthetase, beta-Grasp domain NDN11_12680 PF00117 Glutamine amidotransferase class-I NDN11_12685 PF00375 Sodium:dicarboxylate symporter family NDN11_12695 PF07715 TonB-dependent Receptor Plug Domain NDN11_12695 PF00593 TonB dependent receptor NDN11_12700 PF02885 Glycosyl transferase family, helical bundle domain NDN11_12700 PF00591 Glycosyl transferase family, a/b domain NDN11_12705 PF00218 Indole-3-glycerol phosphate synthase NDN11_12720 PF01227 GTP cyclohydrolase I NDN11_12740 PF05675 Protein of unknown function (DUF817) NDN11_12745 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDN11_12755 PF00563 EAL domain NDN11_12755 PF01590 GAF domain NDN11_12755 PF00990 Diguanylate cyclase, GGDEF domain NDN11_12755 PF00360 Phytochrome region NDN11_12760 PF01979 Amidohydrolase family NDN11_12765 PF00929 Exonuclease NDN11_12775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN11_12775 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_12780 PF00005 ABC transporter NDN11_12780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN11_12785 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_12785 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN11_12790 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_12795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN11_12800 PF01476 LysM domain NDN11_12800 PF01464 Transglycosylase SLT domain NDN11_12805 PF00929 Exonuclease NDN11_12815 PF00293 NUDIX domain NDN11_12815 PF09297 NADH pyrophosphatase zinc ribbon domain NDN11_12835 PF04972 BON domain NDN11_12840 PF02021 Uncharacterised protein family UPF0102 NDN11_12850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN11_12860 PF13411 MerR HTH family regulatory protein NDN11_12870 PF01494 FAD binding domain NDN11_12875 PF01494 FAD binding domain NDN11_12885 PF05195 Aminopeptidase P, N-terminal domain NDN11_12885 PF00557 Metallopeptidase family M24 NDN11_12890 PF03695 Uncharacterised protein family (UPF0149) NDN11_12925 PF00691 OmpA family NDN11_12925 PF04355 SmpA / OmlA family NDN11_12930 PF03895 YadA-like membrane anchor domain NDN11_12930 PF13018 Extended Signal Peptide of Type V secretion system NDN11_12930 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_12930 PF05658 Head domain of trimeric autotransporter adhesin NDN11_12930 PF03895 YadA-like membrane anchor domain NDN11_12930 PF13018 Extended Signal Peptide of Type V secretion system NDN11_12930 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_12930 PF05658 Head domain of trimeric autotransporter adhesin NDN11_12935 PF04355 SmpA / OmlA family NDN11_12935 PF00691 OmpA family NDN11_12940 PF05658 Head domain of trimeric autotransporter adhesin NDN11_12940 PF13018 Extended Signal Peptide of Type V secretion system NDN11_12940 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN11_12940 PF03895 YadA-like membrane anchor domain NDN11_12945 PF01812 5-formyltetrahydrofolate cyclo-ligase family NDN11_12950 PF02190 ATP-dependent protease La (LON) substrate-binding domain NDN11_12950 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN11_12950 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_12955 PF02590 Predicted SPOUT methyltransferase NDN11_12960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN11_12970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN11_12970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN11_12975 PF04060 Putative Fe-S cluster NDN11_12980 PF10576 Iron-sulfur binding domain of endonuclease III NDN11_12980 PF00633 Helix-hairpin-helix motif NDN11_12980 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN11_12990 PF05191 Adenylate kinase, active site lid NDN11_13005 PF00905 Penicillin binding protein transpeptidase domain NDN11_13005 PF03717 Penicillin-binding Protein dimerisation domain NDN11_13030 PF17961 Bacterial Ig domain NDN11_13030 PF00746 LPXTG cell wall anchor motif NDN11_13030 PF17210 SdrD B-like domain NDN11_13030 PF04650 YSIRK type signal peptide NDN11_13030 PF10425 C-terminus of bacterial fibrinogen-binding adhesin NDN11_13035 PF01343 Peptidase family S49 NDN11_13035 PF08496 Peptidase family S49 N-terminal NDN11_13040 PF00005 ABC transporter NDN11_13045 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_13050 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_13055 PF12849 PBP superfamily domain NDN11_13070 PF00324 Amino acid permease NDN11_13075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN11_13075 PF00205 Thiamine pyrophosphate enzyme, central domain NDN11_13075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN11_13080 PF01037 Lrp/AsnC ligand binding domain NDN11_13085 PF00171 Aldehyde dehydrogenase family NDN11_13090 PF00355 Rieske [2Fe-2S] domain NDN11_13095 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN11_13100 PF00202 Aminotransferase class-III NDN11_13110 PF07660 Secretin and TonB N terminus short domain NDN11_13110 PF00593 TonB dependent receptor NDN11_13110 PF07715 TonB-dependent Receptor Plug Domain NDN11_13115 PF00593 TonB dependent receptor NDN11_13115 PF07660 Secretin and TonB N terminus short domain NDN11_13115 PF07715 TonB-dependent Receptor Plug Domain NDN11_13135 PF00487 Fatty acid desaturase NDN11_13140 PF00970 Oxidoreductase FAD-binding domain NDN11_13140 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN11_13140 PF00175 Oxidoreductase NAD-binding domain NDN11_13145 PF00440 Bacterial regulatory proteins, tetR family NDN11_13155 PF00210 Ferritin-like domain NDN11_13160 PF00271 Helicase conserved C-terminal domain NDN11_13160 PF18339 RapA N-terminal Tudor like domain 1 NDN11_13160 PF18337 RapA N-terminal Tudor like domain NDN11_13160 PF12137 RNA polymerase recycling family C-terminal NDN11_13160 PF00176 SNF2 family N-terminal domain NDN11_13165 PF00849 RNA pseudouridylate synthase NDN11_13175 PF00202 Aminotransferase class-III NDN11_13180 PF02581 Thiamine monophosphate synthase NDN11_13190 PF01928 CYTH domain NDN11_13205 PF05193 Peptidase M16 inactive domain NDN11_13205 PF00675 Insulinase (Peptidase family M16) NDN11_13210 PF02567 Phenazine biosynthesis-like protein NDN11_13230 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN11_13235 PF00849 RNA pseudouridylate synthase NDN11_13245 PF03971 Monomeric isocitrate dehydrogenase NDN11_13250 PF00672 HAMP domain NDN11_13250 PF00512 His Kinase A (phospho-acceptor) domain NDN11_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_13255 PF00486 Transcriptional regulatory protein, C terminal NDN11_13255 PF00072 Response regulator receiver domain NDN11_13265 PF00576 HIUase/Transthyretin family NDN11_13275 PF00768 D-alanyl-D-alanine carboxypeptidase NDN11_13275 PF07943 Penicillin-binding protein 5, C-terminal domain NDN11_13280 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_13285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_13290 PF00875 DNA photolyase NDN11_13290 PF03441 FAD binding domain of DNA photolyase NDN11_13320 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN11_13335 PF03060 Nitronate monooxygenase NDN11_13340 PF02503 Polyphosphate kinase middle domain NDN11_13340 PF13090 Polyphosphate kinase C-terminal domain 2 NDN11_13340 PF17941 Polyphosphate kinase C-terminal domain 1 NDN11_13340 PF13089 Polyphosphate kinase N-terminal domain NDN11_13345 PF00912 Transglycosylase NDN11_13350 PF01694 Rhomboid family NDN11_13360 PF07715 TonB-dependent Receptor Plug Domain NDN11_13360 PF00593 TonB dependent receptor NDN11_13365 PF00486 Transcriptional regulatory protein, C terminal NDN11_13365 PF00072 Response regulator receiver domain NDN11_13370 PF11808 Phosphate regulon sensor protein PhoR NDN11_13370 PF00989 PAS fold NDN11_13370 PF00512 His Kinase A (phospho-acceptor) domain NDN11_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_13380 PF00005 ABC transporter NDN11_13385 PF13472 GDSL-like Lipase/Acylhydrolase family NDN11_13390 PF00583 Acetyltransferase (GNAT) family NDN11_13395 PF00484 Carbonic anhydrase NDN11_13400 PF00561 alpha/beta hydrolase fold NDN11_13410 PF07715 TonB-dependent Receptor Plug Domain NDN11_13410 PF00593 TonB dependent receptor NDN11_13415 PF01521 Iron-sulphur cluster biosynthesis NDN11_13415 PF01106 NifU-like domain NDN11_13425 PF00884 Sulfatase NDN11_13430 PF03781 Sulfatase-modifying factor enzyme 1 NDN11_13440 PF00152 tRNA synthetases class II (D, K and N) NDN11_13445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN11_13445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN11_13445 PF11890 Domain of unknown function (DUF3410) NDN11_13450 PF01219 Prokaryotic diacylglycerol kinase NDN11_13460 PF00118 TCP-1/cpn60 chaperonin family NDN11_13465 PF00166 Chaperonin 10 Kd subunit NDN11_13475 PF00781 Diacylglycerol kinase catalytic domain NDN11_13480 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NDN11_13480 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NDN11_13485 PF07660 Secretin and TonB N terminus short domain NDN11_13485 PF00593 TonB dependent receptor NDN11_13485 PF07715 TonB-dependent Receptor Plug Domain NDN11_13490 PF01266 FAD dependent oxidoreductase NDN11_13490 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDN11_13495 PF00455 DeoR C terminal sensor domain NDN11_13495 PF08220 DeoR-like helix-turn-helix domain NDN11_13500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDN11_13500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDN11_13510 PF14542 GCN5-related N-acetyl-transferase NDN11_13520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDN11_13520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDN11_13535 PF09423 PhoD-like phosphatase NDN11_13535 PF16655 PhoD-like phosphatase, N-terminal domain NDN11_13550 PF00535 Glycosyl transferase family 2 NDN11_13555 PF14883 Hypothetical glycosyl hydrolase family 13 NDN11_13555 PF01522 Polysaccharide deacetylase NDN11_13565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_13570 PF07152 YaeQ protein NDN11_13575 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN11_13575 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN11_13585 PF03061 Thioesterase superfamily NDN11_13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_13605 PF03466 LysR substrate binding domain NDN11_13615 PF01810 LysE type translocator NDN11_13645 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN11_13645 PF03449 Transcription elongation factor, N-terminal NDN11_13680 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_13680 PF01464 Transglycosylase SLT domain NDN11_13690 PF01171 PP-loop family NDN11_13695 PF01464 Transglycosylase SLT domain NDN11_13700 PF01435 Peptidase family M48 NDN11_13710 PF01769 Divalent cation transporter NDN11_13710 PF00571 CBS domain NDN11_13710 PF03448 MgtE intracellular N domain NDN11_13715 PF00873 AcrB/AcrD/AcrF family NDN11_13720 PF00884 Sulfatase NDN11_13725 PF03009 Glycerophosphoryl diester phosphodiesterase family NDN11_13740 PF00561 alpha/beta hydrolase fold NDN11_13750 PF13291 ACT domain NDN11_13750 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_13755 PF12034 Domain of unknown function (DUF3520) NDN11_13755 PF00092 von Willebrand factor type A domain NDN11_13755 PF12450 von Willebrand factor NDN11_13765 PF00809 Pterin binding enzyme NDN11_13770 PF01434 Peptidase family M41 NDN11_13770 PF06480 FtsH Extracellular NDN11_13770 PF00004 ATPase family associated with various cellular activities (AAA) NDN11_13770 PF17862 AAA+ lid domain NDN11_13775 PF01728 FtsJ-like methyltransferase NDN11_13780 PF01985 CRS1 / YhbY (CRM) domain NDN11_13795 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN11_13795 PF00117 Glutamine amidotransferase class-I NDN11_13800 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NDN11_13800 PF02142 MGS-like domain NDN11_13800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_13805 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN11_13805 PF03449 Transcription elongation factor, N-terminal NDN11_13815 PF00593 TonB dependent receptor NDN11_13815 PF07660 Secretin and TonB N terminus short domain NDN11_13815 PF07715 TonB-dependent Receptor Plug Domain NDN11_13820 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_13825 PF00582 Universal stress protein family NDN11_13830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN11_13840 PF09587 Bacterial capsule synthesis protein PGA_cap NDN11_13940 PF00999 Sodium/hydrogen exchanger family NDN11_13945 PF04228 Putative neutral zinc metallopeptidase NDN11_13950 PF05661 Protein of unknown function (DUF808) NDN11_13955 PF00579 tRNA synthetases class I (W and Y) NDN11_13960 PF07290 Protein of unknown function (DUF1449) NDN11_13965 PF01145 SPFH domain / Band 7 family NDN11_13965 PF15975 Flotillin NDN11_13980 PF02629 CoA binding domain NDN11_13980 PF00549 CoA-ligase NDN11_13985 PF00549 CoA-ligase NDN11_13985 PF08442 ATP-grasp domain NDN11_13990 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_13990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN11_13995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN11_13995 PF00364 Biotin-requiring enzyme NDN11_13995 PF02817 e3 binding domain NDN11_14000 PF16078 2-oxoglutarate dehydrogenase N-terminus NDN11_14000 PF00676 Dehydrogenase E1 component NDN11_14000 PF16870 2-oxoglutarate dehydrogenase C-terminal NDN11_14000 PF02779 Transketolase, pyrimidine binding domain NDN11_14010 PF13085 2Fe-2S iron-sulfur cluster binding domain NDN11_14015 PF02910 Fumarate reductase flavoprotein C-term NDN11_14015 PF00890 FAD binding domain NDN11_14020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN11_14025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN11_14030 PF00285 Citrate synthase, C-terminal domain NDN11_14045 PF17773 UPF0176 acylphosphatase like domain NDN11_14045 PF00581 Rhodanese-like domain NDN11_14050 PF09335 SNARE associated Golgi protein NDN11_14055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_14055 PF03466 LysR substrate binding domain NDN11_14060 PF01810 LysE type translocator NDN11_14075 PF04546 Sigma-70, non-essential region NDN11_14075 PF03979 Sigma-70 factor, region 1.1 NDN11_14075 PF00140 Sigma-70 factor, region 1.2 NDN11_14075 PF04542 Sigma-70 region 2 NDN11_14075 PF04539 Sigma-70 region 3 NDN11_14075 PF04545 Sigma-70, region 4 NDN11_14080 PF04359 Protein of unknown function (DUF493) NDN11_14090 PF03099 Biotin/lipoate A/B protein ligase family NDN11_14100 PF00465 Iron-containing alcohol dehydrogenase NDN11_14105 PF13520 Amino acid permease NDN11_14110 PF03358 NADPH-dependent FMN reductase NDN11_14115 PF01638 HxlR-like helix-turn-helix NDN11_14125 PF00588 SpoU rRNA Methylase family NDN11_14130 PF10414 Sirohaem synthase dimerisation region NDN11_14130 PF14824 Sirohaem biosynthesis protein central NDN11_14130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN11_14135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN11_14135 PF02403 Seryl-tRNA synthetase N-terminal domain NDN11_14145 PF03548 Outer membrane lipoprotein carrier protein LolA NDN11_14150 PF05726 Pirin C-terminal cupin domain NDN11_14150 PF02678 Pirin NDN11_14155 PF01016 Ribosomal L27 protein NDN11_14160 PF00829 Ribosomal prokaryotic L21 protein NDN11_14165 PF00348 Polyprenyl synthetase NDN11_14175 PF01569 PAP2 superfamily NDN11_14180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN11_14180 PF00529 HlyD membrane-fusion protein of T1SS NDN11_14185 PF00873 AcrB/AcrD/AcrF family NDN11_14190 PF02321 Outer membrane efflux protein NDN11_14195 PF01906 Putative heavy-metal-binding NDN11_14200 PF01906 Putative heavy-metal-binding NDN11_14205 PF07690 Major Facilitator Superfamily NDN11_14230 PF08264 Anticodon-binding domain of tRNA NDN11_14230 PF00133 tRNA synthetases class I (I, L, M and V) NDN11_14230 PF10458 Valyl tRNA synthetase tRNA binding arm NDN11_14240 PF01797 Transposase IS200 like NDN11_14270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_14270 PF03466 LysR substrate binding domain NDN11_14275 PF01144 Coenzyme A transferase NDN11_14280 PF01144 Coenzyme A transferase NDN11_14285 PF02667 Short chain fatty acid transporter NDN11_14290 PF00909 Ammonium Transporter Family NDN11_14295 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN11_14300 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_14305 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_14310 PF00005 ABC transporter NDN11_14325 PF08521 Two-component sensor kinase N-terminal NDN11_14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_14325 PF00512 His Kinase A (phospho-acceptor) domain NDN11_14330 PF00486 Transcriptional regulatory protein, C terminal NDN11_14330 PF00072 Response regulator receiver domain NDN11_14335 PF08019 Phosphoethanolamine transferase EptA/EptB NDN11_14335 PF00884 Sulfatase NDN11_14355 PF01734 Patatin-like phospholipase NDN11_14365 PF01145 SPFH domain / Band 7 family NDN11_14370 PF04237 YjbR NDN11_14375 PF00348 Polyprenyl synthetase NDN11_14380 PF04303 PrpF protein NDN11_14385 PF00324 Amino acid permease NDN11_14395 PF00120 Glutamine synthetase, catalytic domain NDN11_14405 PF07715 TonB-dependent Receptor Plug Domain NDN11_14405 PF00593 TonB dependent receptor NDN11_14415 PF01569 PAP2 superfamily NDN11_14425 PF03600 Citrate transporter NDN11_14430 PF12833 Helix-turn-helix domain NDN11_14430 PF02311 AraC-like ligand binding domain NDN11_14435 PF00171 Aldehyde dehydrogenase family NDN11_14440 PF05643 Putative bacterial lipoprotein (DUF799) NDN11_14450 PF03783 Curli production assembly/transport component CsgG NDN11_14455 PF00072 Response regulator receiver domain NDN11_14455 PF00486 Transcriptional regulatory protein, C terminal NDN11_14460 PF13493 Domain of unknown function (DUF4118) NDN11_14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_14460 PF00512 His Kinase A (phospho-acceptor) domain NDN11_14460 PF02702 Osmosensitive K+ channel His kinase sensor domain NDN11_14465 PF02669 K+-transporting ATPase, c chain NDN11_14475 PF03814 Potassium-transporting ATPase A subunit NDN11_14495 PF01507 Phosphoadenosine phosphosulfate reductase family NDN11_14500 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NDN11_14500 PF06974 Protein of unknown function (DUF1298) NDN11_14510 PF00575 S1 RNA binding domain NDN11_14510 PF10150 Ribonuclease E/G family NDN11_14515 PF02545 Maf-like protein NDN11_14525 PF04085 rod shape-determining protein MreC NDN11_14535 PF02686 Glu-tRNAGln amidotransferase C subunit NDN11_14540 PF01425 Amidase NDN11_14545 PF02934 GatB/GatE catalytic domain NDN11_14545 PF02637 GatB domain NDN11_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_14580 PF03466 LysR substrate binding domain NDN11_14595 PF05649 Peptidase family M13 NDN11_14595 PF01431 Peptidase family M13 NDN11_14600 PF05992 SbmA/BacA-like family NDN11_14605 PF01734 Patatin-like phospholipase NDN11_14610 PF01235 Sodium:alanine symporter family NDN11_14615 PF03616 Sodium/glutamate symporter NDN11_14625 PF00881 Nitroreductase family NDN11_14630 PF07690 Major Facilitator Superfamily NDN11_14635 PF12805 FUSC-like inner membrane protein yccS NDN11_14645 PF00175 Oxidoreductase NAD-binding domain NDN11_14645 PF00258 Flavodoxin NDN11_14645 PF00667 FAD binding domain NDN11_14690 PF03734 L,D-transpeptidase catalytic domain NDN11_14690 PF17969 L,D-transpeptidase C-terminal domain NDN11_14695 PF04304 Protein of unknown function (DUF454) NDN11_14710 PF01546 Peptidase family M20/M25/M40 NDN11_14710 PF07687 Peptidase dimerisation domain NDN11_14720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_14720 PF01627 Hpt domain NDN11_14720 PF00072 Response regulator receiver domain NDN11_14720 PF01584 CheW-like domain NDN11_14725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDN11_14725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDN11_14730 PF01584 CheW-like domain NDN11_14735 PF00072 Response regulator receiver domain NDN11_14740 PF00072 Response regulator receiver domain NDN11_14750 PF04073 Aminoacyl-tRNA editing domain NDN11_14750 PF03129 Anticodon binding domain NDN11_14750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN11_14755 PF07411 Domain of unknown function (DUF1508) NDN11_14760 PF03831 PhnA domain NDN11_14760 PF08274 PhnA Zinc-Ribbon NDN11_14765 PF04343 Protein of unknown function, DUF488 NDN11_14780 PF01571 Aminomethyltransferase folate-binding domain NDN11_14795 PF10411 Disulfide bond isomerase protein N-terminus NDN11_14795 PF13098 Thioredoxin-like domain NDN11_14805 PF07715 TonB-dependent Receptor Plug Domain NDN11_14805 PF00593 TonB dependent receptor NDN11_14810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDN11_14810 PF06827 Zinc finger found in FPG and IleRS NDN11_14810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDN11_14825 PF01741 Large-conductance mechanosensitive channel, MscL NDN11_14830 PF00679 Elongation factor G C-terminus NDN11_14830 PF00009 Elongation factor Tu GTP binding domain NDN11_14830 PF03144 Elongation factor Tu domain 2 NDN11_14835 PF00860 Permease family NDN11_14840 PF05175 Methyltransferase small domain NDN11_14840 PF08468 Methyltransferase small domain N-terminal NDN11_14845 PF00324 Amino acid permease NDN11_14850 PF01139 tRNA-splicing ligase RtcB NDN11_14860 PF13505 Outer membrane protein beta-barrel domain NDN11_14860 PF00691 OmpA family NDN11_14865 PF00691 OmpA family NDN11_14865 PF13505 Outer membrane protein beta-barrel domain NDN11_14875 PF00108 Thiolase, N-terminal domain NDN11_14875 PF02803 Thiolase, C-terminal domain NDN11_14885 PF00893 Small Multidrug Resistance protein NDN11_14895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN11_14895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN11_14900 PF01011 PQQ enzyme repeat NDN11_14905 PF04966 Carbohydrate-selective porin, OprB family NDN11_14910 PF02515 CoA-transferase family III NDN11_14915 PF02311 AraC-like ligand binding domain NDN11_14915 PF12833 Helix-turn-helix domain NDN11_14945 PF02803 Thiolase, C-terminal domain NDN11_14945 PF00108 Thiolase, N-terminal domain NDN11_14950 PF00378 Enoyl-CoA hydratase/isomerase NDN11_14950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN11_14950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN11_14970 PF13673 Acetyltransferase (GNAT) domain NDN11_14980 PF03006 Haemolysin-III related NDN11_14985 PF07690 Major Facilitator Superfamily NDN11_14985 PF00083 Sugar (and other) transporter NDN11_15000 PF02810 SEC-C motif NDN11_15000 PF01043 SecA preprotein cross-linking domain NDN11_15000 PF07516 SecA Wing and Scaffold domain NDN11_15000 PF07517 SecA DEAD-like domain NDN11_15005 PF00578 AhpC/TSA family NDN11_15005 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN11_15010 PF00753 Metallo-beta-lactamase superfamily NDN11_15030 PF02875 Mur ligase family, glutamate ligase domain NDN11_15030 PF08245 Mur ligase middle domain NDN11_15035 PF01039 Carboxyl transferase domain NDN11_15040 PF00290 Tryptophan synthase alpha chain NDN11_15070 PF00149 Calcineurin-like phosphoesterase NDN11_15080 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_15085 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDN11_15090 PF07715 TonB-dependent Receptor Plug Domain NDN11_15090 PF00593 TonB dependent receptor NDN11_15095 PF01923 Cobalamin adenosyltransferase NDN11_15115 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDN11_15125 PF00072 Response regulator receiver domain NDN11_15125 PF00486 Transcriptional regulatory protein, C terminal NDN11_15130 PF00672 HAMP domain NDN11_15130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_15130 PF00512 His Kinase A (phospho-acceptor) domain NDN11_15140 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_15140 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN11_15140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_15140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_15145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_15145 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_15145 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN11_15145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_15155 PF06146 Phosphate-starvation-inducible E NDN11_15185 PF07715 TonB-dependent Receptor Plug Domain NDN11_15185 PF00593 TonB dependent receptor NDN11_15195 PF02938 GAD domain NDN11_15195 PF00152 tRNA synthetases class II (D, K and N) NDN11_15195 PF01336 OB-fold nucleic acid binding domain NDN11_15220 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN11_15225 PF01501 Glycosyl transferase family 8 NDN11_15225 PF00535 Glycosyl transferase family 2 NDN11_15230 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN11_15245 PF17101 Stealth protein CR1, conserved region 1 NDN11_15245 PF11380 Stealth protein CR2, conserved region 2 NDN11_15255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN11_15255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN11_15260 PF01370 NAD dependent epimerase/dehydratase family NDN11_15270 PF01063 Amino-transferase class IV NDN11_15275 PF08335 GlnD PII-uridylyltransferase NDN11_15275 PF03710 Glutamate-ammonia ligase adenylyltransferase NDN11_15280 PF16736 Single Cache-like NDN11_15280 PF00989 PAS fold NDN11_15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_15280 PF00512 His Kinase A (phospho-acceptor) domain NDN11_15305 PF02547 Queuosine biosynthesis protein NDN11_15320 PF01702 Queuine tRNA-ribosyltransferase NDN11_15325 PF02699 Preprotein translocase subunit NDN11_15330 PF02355 Protein export membrane protein NDN11_15330 PF13721 SecD export protein N-terminal TM region NDN11_15330 PF07549 SecD/SecF GG Motif NDN11_15335 PF02355 Protein export membrane protein NDN11_15335 PF07549 SecD/SecF GG Motif NDN11_15345 PF01926 50S ribosome-binding GTPase NDN11_15345 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDN11_15350 PF13360 PQQ-like domain NDN11_15360 PF13393 Histidyl-tRNA synthetase NDN11_15360 PF03129 Anticodon binding domain NDN11_15365 PF04551 GcpE protein NDN11_15380 PF04055 Radical SAM superfamily NDN11_15385 PF00334 Nucleoside diphosphate kinase NDN11_15390 PF04384 Iron-sulphur cluster assembly NDN11_15395 PF01569 PAP2 superfamily NDN11_15400 PF13439 Glycosyltransferase Family 4 NDN11_15400 PF00534 Glycosyl transferases group 1 NDN11_15405 PF00149 Calcineurin-like phosphoesterase NDN11_15410 PF00398 Ribosomal RNA adenine dimethylase NDN11_15415 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDN11_15425 PF00572 Ribosomal protein L13 NDN11_15430 PF00380 Ribosomal protein S9/S16 NDN11_15440 PF02798 Glutathione S-transferase, N-terminal domain NDN11_15440 PF00043 Glutathione S-transferase, C-terminal domain NDN11_15445 PF04386 Stringent starvation protein B NDN11_15475 PF03372 Endonuclease/Exonuclease/phosphatase family NDN11_15500 PF00364 Biotin-requiring enzyme NDN11_15500 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN11_15500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN11_15500 PF00289 Biotin carboxylase, N-terminal domain NDN11_15500 PF02785 Biotin carboxylase C-terminal domain NDN11_15510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_15510 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_15510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_15515 PF01039 Carboxyl transferase domain NDN11_15530 PF00440 Bacterial regulatory proteins, tetR family NDN11_15530 PF17932 Tetracyclin repressor-like, C-terminal domain NDN11_15535 PF13302 Acetyltransferase (GNAT) domain NDN11_15545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_15545 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_15545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_15600 PF01066 CDP-alcohol phosphatidyltransferase NDN11_15605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDN11_15625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDN11_15625 PF00056 lactate/malate dehydrogenase, NAD binding domain NDN11_15635 PF01551 Peptidase family M23 NDN11_15635 PF10145 Phage-related minor tail protein NDN11_15635 PF01464 Transglycosylase SLT domain NDN11_15640 PF00919 Uncharacterized protein family UPF0004 NDN11_15640 PF01938 TRAM domain NDN11_15640 PF04055 Radical SAM superfamily NDN11_15645 PF02562 PhoH-like protein NDN11_15650 PF02130 Uncharacterized protein family UPF0054 NDN11_15680 PF09234 Domain of unknown function (DUF1963) NDN11_15685 PF00303 Thymidylate synthase NDN11_15690 PF00186 Dihydrofolate reductase NDN11_15705 PF01625 Peptide methionine sulfoxide reductase NDN11_15715 PF01618 MotA/TolQ/ExbB proton channel family NDN11_15725 PF01842 ACT domain NDN11_15725 PF00551 Formyl transferase NDN11_15730 PF08360 QacR-like protein, C-terminal region NDN11_15730 PF00440 Bacterial regulatory proteins, tetR family NDN11_15735 PF00171 Aldehyde dehydrogenase family NDN11_15740 PF00830 Ribosomal L28 family NDN11_15745 PF00471 Ribosomal protein L33 NDN11_15750 PF00999 Sodium/hydrogen exchanger family NDN11_15750 PF02254 TrkA-N domain NDN11_15780 PF13361 UvrD-like helicase C-terminal domain NDN11_15780 PF00580 UvrD/REP helicase N-terminal domain NDN11_15795 PF01131 DNA topoisomerase NDN11_15795 PF01751 Toprim domain NDN11_15795 PF01396 Topoisomerase DNA binding C4 zinc finger NDN11_15795 PF08272 Topoisomerase I zinc-ribbon-like NDN11_15805 PF01638 HxlR-like helix-turn-helix NDN11_15810 PF08240 Alcohol dehydrogenase GroES-like domain NDN11_15810 PF00107 Zinc-binding dehydrogenase NDN11_15815 PF04102 SlyX NDN11_15820 PF00005 ABC transporter NDN11_15820 PF16326 ABC transporter C-terminal domain NDN11_15820 PF12848 ABC transporter NDN11_15825 PF01661 Macro domain NDN11_15830 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN11_15860 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN11_15860 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN11_15880 PF01416 tRNA pseudouridine synthase NDN11_15890 PF01176 Translation initiation factor 1A / IF-1 NDN11_15905 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN11_15915 PF00694 Aconitase C-terminal domain NDN11_15920 PF00330 Aconitase family (aconitate hydratase) NDN11_15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_15930 PF03466 LysR substrate binding domain NDN11_15950 PF00293 NUDIX domain NDN11_15955 PF02896 PEP-utilising enzyme, TIM barrel domain NDN11_15955 PF05524 PEP-utilising enzyme, N-terminal NDN11_15955 PF01590 GAF domain NDN11_15955 PF00391 PEP-utilising enzyme, mobile domain NDN11_15965 PF00199 Catalase NDN11_15965 PF06628 Catalase-related immune-responsive NDN11_15980 PF12706 Beta-lactamase superfamily domain NDN11_15985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_15985 PF03466 LysR substrate binding domain NDN11_15990 PF02798 Glutathione S-transferase, N-terminal domain NDN11_16000 PF13419 Haloacid dehalogenase-like hydrolase NDN11_16005 PF00849 RNA pseudouridylate synthase NDN11_16005 PF01479 S4 domain NDN11_16015 PF10150 Ribonuclease E/G family NDN11_16015 PF00575 S1 RNA binding domain NDN11_16015 PF12111 Polyribonucleotide phosphorylase C terminal NDN11_16020 PF00501 AMP-binding enzyme NDN11_16020 PF13193 AMP-binding enzyme C-terminal domain NDN11_16035 PF06969 HemN C-terminal domain NDN11_16035 PF04055 Radical SAM superfamily NDN11_16045 PF01554 MatE NDN11_16050 PF03109 ABC1 family NDN11_16055 PF01197 Ribosomal protein L31 NDN11_16065 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDN11_16080 PF01613 Flavin reductase like domain NDN11_16095 PF13247 4Fe-4S dicluster domain NDN11_16095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN11_16095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN11_16105 PF03884 DNA gyrase inhibitor YacG NDN11_16115 PF00753 Metallo-beta-lactamase superfamily NDN11_16120 PF00762 Ferrochelatase NDN11_16130 PF01177 Asp/Glu/Hydantoin racemase NDN11_16145 PF01206 Sulfurtransferase TusA NDN11_16150 PF03471 Transporter associated domain NDN11_16150 PF00571 CBS domain NDN11_16155 PF00795 Carbon-nitrogen hydrolase NDN11_16160 PF01588 Putative tRNA binding domain NDN11_16175 PF08334 Type II secretion system (T2SS), protein G NDN11_16175 PF07963 Prokaryotic N-terminal methylation motif NDN11_16180 PF00482 Type II secretion system (T2SS), protein F NDN11_16185 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDN11_16185 PF18074 Primosomal protein N C-terminal domain NDN11_16185 PF00271 Helicase conserved C-terminal domain NDN11_16185 PF17764 3′ DNA-binding domain (3′BD) NDN11_16185 PF00270 DEAD/DEAH box helicase NDN11_16190 PF00999 Sodium/hydrogen exchanger family NDN11_16190 PF02254 TrkA-N domain NDN11_16195 PF01430 Hsp33 protein NDN11_16210 PF00226 DnaJ domain NDN11_16210 PF01556 DnaJ C terminal domain NDN11_16220 PF01544 CorA-like Mg2+ transporter protein NDN11_16225 PF00375 Sodium:dicarboxylate symporter family NDN11_16230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDN11_16230 PF01138 3' exoribonuclease family, domain 1 NDN11_16230 PF03725 3' exoribonuclease family, domain 2 NDN11_16230 PF00575 S1 RNA binding domain NDN11_16230 PF00013 KH domain NDN11_16235 PF00312 Ribosomal protein S15 NDN11_16240 PF00144 Beta-lactamase NDN11_16245 PF13538 UvrD-like helicase C-terminal domain NDN11_16250 PF12705 PD-(D/E)XK nuclease superfamily NDN11_16250 PF00580 UvrD/REP helicase N-terminal domain NDN11_16250 PF13361 UvrD-like helicase C-terminal domain NDN11_16255 PF17946 RecC C-terminal domain NDN11_16265 PF07690 Major Facilitator Superfamily NDN11_16270 PF03976 Polyphosphate kinase 2 (PPK2) NDN11_16280 PF01209 ubiE/COQ5 methyltransferase family NDN11_16290 PF03109 ABC1 family NDN11_16295 PF01494 FAD binding domain NDN11_16300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN11_16310 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN11_16325 PF13244 Domain of unknown function (DUF4040) NDN11_16325 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDN11_16325 PF00361 Proton-conducting membrane transporter NDN11_16325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN11_16330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN11_16335 PF00361 Proton-conducting membrane transporter NDN11_16340 PF01899 Na+/H+ ion antiporter subunit NDN11_16345 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDN11_16350 PF03334 Na+/H+ antiporter subunit NDN11_16360 PF02033 Ribosome-binding factor A NDN11_16365 PF04760 Translation initiation factor IF-2, N-terminal region NDN11_16365 PF08364 Bacterial translation initiation factor IF-2 associated region NDN11_16365 PF11987 Translation-initiation factor 2 NDN11_16365 PF00009 Elongation factor Tu GTP binding domain NDN11_16370 PF13184 NusA-like KH domain NDN11_16370 PF00575 S1 RNA binding domain NDN11_16370 PF08529 NusA N-terminal domain NDN11_16375 PF17384 RimP C-terminal SH3 domain NDN11_16375 PF02576 RimP N-terminal domain NDN11_16395 PF03840 Preprotein translocase SecG subunit NDN11_16400 PF00121 Triosephosphate isomerase NDN11_16405 PF00437 Type II/IV secretion system protein NDN11_16405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN11_16410 PF00482 Type II secretion system (T2SS), protein F NDN11_16415 PF06750 Bacterial Peptidase A24 N-terminal domain NDN11_16415 PF01478 Type IV leader peptidase family NDN11_16420 PF01121 Dephospho-CoA kinase NDN11_16430 PF00588 SpoU rRNA Methylase family NDN11_16430 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN11_16435 PF06865 Pyrimidine/purine nucleoside phosphorylase NDN11_16440 PF02463 RecF/RecN/SMC N terminal domain NDN11_16445 PF02622 Uncharacterized ACR, COG1678 NDN11_16450 PF03652 Holliday junction resolvase NDN11_16455 PF13533 Biotin-lipoyl like NDN11_16480 PF01066 CDP-alcohol phosphatidyltransferase NDN11_16490 PF01541 GIY-YIG catalytic domain NDN11_16490 PF08459 UvrC Helix-hairpin-helix N-terminal NDN11_16490 PF02151 UvrB/uvrC motif NDN11_16505 PF00378 Enoyl-CoA hydratase/isomerase NDN11_16505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN11_16505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN11_16510 PF02803 Thiolase, C-terminal domain NDN11_16510 PF00108 Thiolase, N-terminal domain NDN11_16525 PF00376 MerR family regulatory protein NDN11_16525 PF09278 MerR, DNA binding NDN11_16535 PF00664 ABC transporter transmembrane region NDN11_16535 PF00005 ABC transporter NDN11_16545 PF01323 DSBA-like thioredoxin domain NDN11_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_16565 PF00183 Hsp90 protein NDN11_16580 PF13726 Na+-H+ antiporter family NDN11_16580 PF03553 Na+/H+ antiporter family NDN11_16605 PF04997 RNA polymerase Rpb1, domain 1 NDN11_16605 PF04983 RNA polymerase Rpb1, domain 3 NDN11_16605 PF05000 RNA polymerase Rpb1, domain 4 NDN11_16605 PF04998 RNA polymerase Rpb1, domain 5 NDN11_16605 PF00623 RNA polymerase Rpb1, domain 2 NDN11_16610 PF04561 RNA polymerase Rpb2, domain 2 NDN11_16610 PF04565 RNA polymerase Rpb2, domain 3 NDN11_16610 PF10385 RNA polymerase beta subunit external 1 domain NDN11_16610 PF00562 RNA polymerase Rpb2, domain 6 NDN11_16610 PF04560 RNA polymerase Rpb2, domain 7 NDN11_16610 PF04563 RNA polymerase beta subunit NDN11_16615 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN11_16615 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN11_16620 PF00466 Ribosomal protein L10 NDN11_16625 PF00687 Ribosomal protein L1p/L10e family NDN11_16630 PF00298 Ribosomal protein L11, RNA binding domain NDN11_16630 PF03946 Ribosomal protein L11, N-terminal domain NDN11_16635 PF02357 Transcription termination factor nusG NDN11_16635 PF00467 KOW motif NDN11_16640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDN11_16650 PF03143 Elongation factor Tu C-terminal domain NDN11_16650 PF00009 Elongation factor Tu GTP binding domain NDN11_16650 PF03144 Elongation factor Tu domain 2 NDN11_16675 PF00425 chorismate binding enzyme NDN11_16675 PF04715 Anthranilate synthase component I, N terminal region NDN11_16680 PF13419 Haloacid dehalogenase-like hydrolase NDN11_16685 PF12401 Protein of unknown function (DUF2662) NDN11_16685 PF00498 FHA domain NDN11_16690 PF00263 Bacterial type II and III secretion system protein NDN11_16690 PF03958 Bacterial type II/III secretion system short domain NDN11_16705 PF00816 H-NS histone family NDN11_16730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDN11_16730 PF03900 Porphobilinogen deaminase, C-terminal domain NDN11_16735 PF00072 Response regulator receiver domain NDN11_16735 PF04397 LytTr DNA-binding domain NDN11_16740 PF07694 5TMR of 5TMR-LYT NDN11_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_16740 PF06580 Histidine kinase NDN11_16745 PF00206 Lyase NDN11_16745 PF14698 Argininosuccinate lyase C-terminal NDN11_16750 PF04362 Bacterial Fe(2+) trafficking NDN11_16755 PF01895 PhoU domain NDN11_16760 PF13667 ThiC-associated domain NDN11_16760 PF01964 Radical SAM ThiC family NDN11_16765 PF00293 NUDIX domain NDN11_16770 PF00149 Calcineurin-like phosphoesterase NDN11_16775 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDN11_16780 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN11_16785 PF01098 Cell cycle protein NDN11_16790 PF02875 Mur ligase family, glutamate ligase domain NDN11_16790 PF08245 Mur ligase middle domain NDN11_16805 PF07664 Ferrous iron transport protein B C terminus NDN11_16805 PF02421 Ferrous iron transport protein B NDN11_16805 PF07670 Nucleoside recognition NDN11_16815 PF02899 Phage integrase, N-terminal SAM-like domain NDN11_16815 PF00589 Phage integrase family NDN11_16820 PF10411 Disulfide bond isomerase protein N-terminus NDN11_16820 PF13098 Thioredoxin-like domain NDN11_16825 PF01842 ACT domain NDN11_16825 PF00742 Homoserine dehydrogenase NDN11_16825 PF03447 Homoserine dehydrogenase, NAD binding domain NDN11_16830 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_16845 PF00768 D-alanyl-D-alanine carboxypeptidase NDN11_16850 PF00072 Response regulator receiver domain NDN11_16850 PF00196 Bacterial regulatory proteins, luxR family NDN11_16855 PF00512 His Kinase A (phospho-acceptor) domain NDN11_16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_16860 PF02954 Bacterial regulatory protein, Fis family NDN11_16860 PF00072 Response regulator receiver domain NDN11_16860 PF00158 Sigma-54 interaction domain NDN11_16865 PF03572 Peptidase family S41 NDN11_16865 PF01471 Putative peptidoglycan binding domain NDN11_16865 PF17820 PDZ domain NDN11_16870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NDN11_16870 PF01676 Metalloenzyme superfamily NDN11_16875 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN11_16880 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN11_16885 PF00883 Cytosol aminopeptidase family, catalytic domain NDN11_16885 PF02789 Cytosol aminopeptidase family, N-terminal domain NDN11_16900 PF00677 Lumazine binding domain NDN11_16905 PF00230 Major intrinsic protein NDN11_16915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN11_16915 PF01872 RibD C-terminal domain NDN11_16920 PF03477 ATP cone domain NDN11_16925 PF00909 Ammonium Transporter Family NDN11_16930 PF00543 Nitrogen regulatory protein P-II NDN11_16940 PF01078 Magnesium chelatase, subunit ChlI NDN11_16940 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDN11_16950 PF01925 Sulfite exporter TauE/SafE NDN11_16965 PF00719 Inorganic pyrophosphatase NDN11_16980 PF00501 AMP-binding enzyme NDN11_16980 PF13193 AMP-binding enzyme C-terminal domain NDN11_16985 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN11_16985 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN11_16990 PF03458 UPF0126 domain NDN11_16995 PF02810 SEC-C motif NDN11_17000 PF03471 Transporter associated domain NDN11_17000 PF03741 Integral membrane protein TerC family NDN11_17005 PF03641 Possible lysine decarboxylase NDN11_17015 PF07690 Major Facilitator Superfamily NDN11_17030 PF11798 IMS family HHH motif NDN11_17030 PF11799 impB/mucB/samB family C-terminal domain NDN11_17030 PF00817 impB/mucB/samB family NDN11_17035 PF00486 Transcriptional regulatory protein, C terminal NDN11_17035 PF00072 Response regulator receiver domain NDN11_17040 PF00512 His Kinase A (phospho-acceptor) domain NDN11_17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_17040 PF00672 HAMP domain NDN11_17045 PF06123 Inner membrane protein CreD NDN11_17065 PF08497 Radical SAM N-terminal NDN11_17065 PF04055 Radical SAM superfamily NDN11_17065 PF11842 Domain of unknown function (DUF3362) NDN11_17075 PF00593 TonB dependent receptor NDN11_17075 PF07715 TonB-dependent Receptor Plug Domain NDN11_17080 PF07690 Major Facilitator Superfamily NDN11_17090 PF13411 MerR HTH family regulatory protein NDN11_17100 PF03358 NADPH-dependent FMN reductase NDN11_17120 PF00291 Pyridoxal-phosphate dependent enzyme NDN11_17155 PF02028 BCCT, betaine/carnitine/choline family transporter NDN11_17160 PF02515 CoA-transferase family III NDN11_17165 PF07690 Major Facilitator Superfamily NDN11_17170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_17170 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_17170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_17175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_17175 PF03466 LysR substrate binding domain NDN11_17195 PF00474 Sodium:solute symporter family NDN11_17200 PF04341 Protein of unknown function, DUF485 NDN11_17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN11_17205 PF09456 RcsC Alpha-Beta-Loop (ABL) NDN11_17205 PF00072 Response regulator receiver domain NDN11_17205 PF00512 His Kinase A (phospho-acceptor) domain NDN11_17225 PF01327 Polypeptide deformylase NDN11_17230 PF01476 LysM domain NDN11_17235 PF17782 DprA winged helix domain NDN11_17235 PF02481 DNA recombination-mediator protein A NDN11_17240 PF01300 Telomere recombination NDN11_17250 PF00440 Bacterial regulatory proteins, tetR family NDN11_17255 PF07690 Major Facilitator Superfamily NDN11_17260 PF07690 Major Facilitator Superfamily NDN11_17270 PF00255 Glutathione peroxidase NDN11_17285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDN11_17290 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN11_17290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN11_17295 PF00231 ATP synthase NDN11_17300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN11_17300 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN11_17300 PF00306 ATP synthase alpha/beta chain, C terminal domain NDN11_17305 PF00213 ATP synthase delta (OSCP) subunit NDN11_17310 PF00430 ATP synthase B/B' CF(0) NDN11_17315 PF00137 ATP synthase subunit C NDN11_17320 PF00119 ATP synthase A chain NDN11_17340 PF00005 ABC transporter NDN11_17345 PF00950 ABC 3 transport family NDN11_17350 PF01810 LysE type translocator NDN11_17355 PF04261 Dyp-type peroxidase family NDN11_17360 PF00750 tRNA synthetases class I (R) NDN11_17360 PF05746 DALR anticodon binding domain NDN11_17360 PF03485 Arginyl tRNA synthetase N terminal domain NDN11_17380 PF05726 Pirin C-terminal cupin domain NDN11_17380 PF02678 Pirin NDN11_17395 PF01475 Ferric uptake regulator family NDN11_17400 PF03551 Transcriptional regulator PadR-like family NDN11_17410 PF02540 NAD synthase NDN11_17410 PF00958 GMP synthase C terminal domain NDN11_17410 PF00117 Glutamine amidotransferase class-I NDN11_17415 PF04286 Protein of unknown function (DUF445) NDN11_17420 PF04076 Bacterial OB fold (BOF) protein NDN11_17425 PF07681 DoxX NDN11_17430 PF09335 SNARE associated Golgi protein NDN11_17445 PF13614 AAA domain NDN11_17455 PF01722 BolA-like protein NDN11_17470 PF07690 Major Facilitator Superfamily NDN11_17470 PF00083 Sugar (and other) transporter NDN11_17480 PF00378 Enoyl-CoA hydratase/isomerase NDN11_17485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_17485 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_17485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_17490 PF00501 AMP-binding enzyme NDN11_17490 PF13193 AMP-binding enzyme C-terminal domain NDN11_17495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN11_17495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN11_17500 PF00171 Aldehyde dehydrogenase family NDN11_17505 PF03466 LysR substrate binding domain NDN11_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_17510 PF00324 Amino acid permease NDN11_17515 PF01042 Endoribonuclease L-PSP NDN11_17520 PF01168 Alanine racemase, N-terminal domain NDN11_17520 PF00842 Alanine racemase, C-terminal domain NDN11_17525 PF01266 FAD dependent oxidoreductase NDN11_17530 PF01037 Lrp/AsnC ligand binding domain NDN11_17540 PF00583 Acetyltransferase (GNAT) family NDN11_17545 PF00849 RNA pseudouridylate synthase NDN11_17585 PF00694 Aconitase C-terminal domain NDN11_17585 PF00330 Aconitase family (aconitate hydratase) NDN11_17590 PF00285 Citrate synthase, C-terminal domain NDN11_17600 PF00392 Bacterial regulatory proteins, gntR family NDN11_17600 PF07729 FCD domain NDN11_17605 PF00155 Aminotransferase class I and II NDN11_17610 PF01565 FAD binding domain NDN11_17610 PF09330 D-lactate dehydrogenase, membrane binding NDN11_17615 PF01070 FMN-dependent dehydrogenase NDN11_17620 PF07729 FCD domain NDN11_17620 PF00392 Bacterial regulatory proteins, gntR family NDN11_17625 PF02652 L-lactate permease NDN11_17630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN11_17630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN11_17630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN11_17630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN11_17635 PF16363 GDP-mannose 4,6 dehydratase NDN11_17640 PF00342 Phosphoglucose isomerase NDN11_17645 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN11_17645 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN11_17645 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN11_17650 PF00483 Nucleotidyl transferase NDN11_17655 PF02719 Polysaccharide biosynthesis protein NDN11_17660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN11_17665 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_17665 PF14602 Hexapeptide repeat of succinyl-transferase NDN11_17665 PF17836 PglD N-terminal domain NDN11_17670 PF02397 Bacterial sugar transferase NDN11_17700 PF00534 Glycosyl transferases group 1 NDN11_17700 PF13439 Glycosyltransferase Family 4 NDN11_17705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN11_17710 PF00132 Bacterial transferase hexapeptide (six repeats) NDN11_17715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDN11_17715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NDN11_17720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN11_17720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN11_17720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN11_17725 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN11_17730 PF02563 Polysaccharide biosynthesis/export protein NDN11_17730 PF10531 SLBB domain NDN11_17730 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NDN11_17735 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN11_17740 PF02706 Chain length determinant protein NDN11_17740 PF13807 G-rich domain on putative tyrosine kinase NDN11_17740 PF13614 AAA domain NDN11_17745 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN11_17745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_17750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN11_17750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_17755 PF01757 Acyltransferase family NDN11_17755 PF01168 Alanine racemase, N-terminal domain NDN11_17755 PF00842 Alanine racemase, C-terminal domain NDN11_17760 PF03023 Lipid II flippase MurJ NDN11_17765 PF01510 N-acetylmuramoyl-L-alanine amidase NDN11_17770 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NDN11_17770 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NDN11_17785 PF05506 Domain of unknown function (DUF756) NDN11_17785 PF04185 Phosphoesterase family NDN11_17790 PF03725 3' exoribonuclease family, domain 2 NDN11_17790 PF01138 3' exoribonuclease family, domain 1 NDN11_17795 PF00487 Fatty acid desaturase NDN11_17800 PF00175 Oxidoreductase NAD-binding domain NDN11_17805 PF00440 Bacterial regulatory proteins, tetR family NDN11_17810 PF08360 QacR-like protein, C-terminal region NDN11_17810 PF00440 Bacterial regulatory proteins, tetR family NDN11_17815 PF01323 DSBA-like thioredoxin domain NDN11_17825 PF13419 Haloacid dehalogenase-like hydrolase NDN11_17830 PF00106 short chain dehydrogenase NDN11_17840 PF00583 Acetyltransferase (GNAT) family NDN11_17840 PF00696 Amino acid kinase family NDN11_17845 PF09084 NMT1/THI5 like NDN11_17850 PF09084 NMT1/THI5 like NDN11_17855 PF00296 Luciferase-like monooxygenase NDN11_17860 PF00528 Binding-protein-dependent transport system inner membrane component NDN11_17865 PF00005 ABC transporter NDN11_17870 PF17938 Tetracyclin repressor-like, C-terminal domain NDN11_17870 PF00440 Bacterial regulatory proteins, tetR family NDN11_17895 PF01048 Phosphorylase superfamily NDN11_17905 PF01687 Riboflavin kinase NDN11_17905 PF06574 FAD synthetase NDN11_17910 PF06827 Zinc finger found in FPG and IleRS NDN11_17910 PF00133 tRNA synthetases class I (I, L, M and V) NDN11_17910 PF08264 Anticodon-binding domain of tRNA NDN11_17915 PF01252 Signal peptidase (SPase) II NDN11_17920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN11_17930 PF02463 RecF/RecN/SMC N terminal domain NDN11_17965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN11_17970 PF07859 alpha/beta hydrolase fold NDN11_17985 PF03466 LysR substrate binding domain NDN11_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_17990 PF01025 GrpE NDN11_17995 PF00012 Hsp70 protein NDN11_18000 PF12706 Beta-lactamase superfamily domain NDN11_18030 PF13406 Transglycosylase SLT domain NDN11_18035 PF02222 ATP-grasp domain NDN11_18035 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDN11_18040 PF00731 AIR carboxylase NDN11_18050 PF01225 Mur ligase family, catalytic domain NDN11_18050 PF02875 Mur ligase family, glutamate ligase domain NDN11_18050 PF08245 Mur ligase middle domain NDN11_18055 PF00106 short chain dehydrogenase NDN11_18070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN11_18070 PF02770 Acyl-CoA dehydrogenase, middle domain NDN11_18070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN11_18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN11_18075 PF03466 LysR substrate binding domain NDN11_18085 PF03741 Integral membrane protein TerC family NDN11_18100 PF03738 Glutathionylspermidine synthase preATP-grasp NDN11_18120 PF01979 Amidohydrolase family NDN11_18125 PF00156 Phosphoribosyl transferase domain NDN11_18130 PF04226 Transglycosylase associated protein NDN11_18135 PF13098 Thioredoxin-like domain NDN11_18135 PF10411 Disulfide bond isomerase protein N-terminus NDN11_18140 PF00437 Type II/IV secretion system protein NDN11_18150 PF01926 50S ribosome-binding GTPase NDN11_18150 PF12631 MnmE helical domain NDN11_18150 PF10396 GTP-binding protein TrmE N-terminus NDN11_18155 PF02096 60Kd inner membrane protein NDN11_18155 PF14849 YidC periplasmic domain NDN11_18160 PF01809 Putative membrane protein insertion efficiency factor NDN11_18165 PF00825 Ribonuclease P NDN11_18170 PF00468 Ribosomal protein L34