locus-tag	class	description
NDN11_00010	COG0592	DNA-directed DNA polymerase activity
NDN11_00020	COG0187	DNA topoisomerase II activity
NDN11_00035	COG0586	Pfam SNARE associated Golgi protein
NDN11_00040	COG0488	(ABC) transporter
NDN11_00070	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NDN11_00075	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NDN11_00130	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_00135	COG0733	neurotransmitter:sodium symporter activity
NDN11_00175	COG0583	DNA-binding transcription factor activity
NDN11_00180	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_00185	COG2233	PERMEase
NDN11_00195	COG1309	transcriptional regulator
NDN11_00200	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_00230	COG2814	Major facilitator Superfamily
NDN11_00235	COG0656	L-ascorbic acid biosynthetic process
NDN11_00240	COG0583	DNA-binding transcription factor activity
NDN11_00250	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDN11_00255	COG1064	alcohol dehydrogenase
NDN11_00260	COG2818	Glycosylase
NDN11_00275	COG1194	a g-specific adenine glycosylase
NDN11_00285	COG5487	UPF0391 membrane protein
NDN11_00290	COG2983	Belongs to the UPF0260 family
NDN11_00295	COG2133	pyrroloquinoline quinone binding
NDN11_00305	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NDN11_00330	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
NDN11_00340	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDN11_00345	COG1335	isochorismatase
NDN11_00350	COG1522	sequence-specific DNA binding
NDN11_00360	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NDN11_00370	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NDN11_00375	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NDN11_00380	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NDN11_00420	COG0753	catalase activity
NDN11_00480	COG0583	DNA-binding transcription factor activity
NDN11_00485	COG0583	DNA-binding transcription factor activity
NDN11_00520	COG0534	Mate efflux family protein
NDN11_00525	COG0436	Aminotransferase
NDN11_00530	COG2733	membrane
NDN11_00545	COG2918	glutathione biosynthetic process
NDN11_00560	COG1388	LysM domain
NDN11_00560	COG0791	NLP P60 protein
NDN11_00590	COG3150	esterase
NDN11_00645	COG0666	response to abiotic stimulus
NDN11_00645	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NDN11_00665	COG3706	GGDEF domain
NDN11_00680	COG1393	Belongs to the ArsC family
NDN11_00685	COG0708	Exodeoxyribonuclease III
NDN11_00695	COG1181	Belongs to the D-alanine--D-alanine ligase family
NDN11_00705	COG0300	oxidoreductase activity
NDN11_00720	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NDN11_00735	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_00755	COG1846	Transcriptional regulator
NDN11_00760	COG0386	Belongs to the glutathione peroxidase family
NDN11_00765	COG0189	ligase activity
NDN11_00785	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NDN11_00830	COG2119	membrane
NDN11_00835	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDN11_00835	COG0426	domain, Protein
NDN11_00855	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NDN11_00880	COG1902	pentaerythritol trinitrate reductase activity
NDN11_00885	COG1519	Transferase
NDN11_00890	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NDN11_00895	COG0668	transmembrane transport
NDN11_00905	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NDN11_00910	COG1335	isochorismatase
NDN11_00915	COG1522	sequence-specific DNA binding
NDN11_00945	COG3706	GGDEF domain
NDN11_00955	COG1309	transcriptional regulator
NDN11_00975	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NDN11_00985	COG2814	Major facilitator Superfamily
NDN11_01010	COG1335	isochorismatase
NDN11_01020	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
NDN11_01050	COG3158	transport of potassium into the cell
NDN11_01065	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NDN11_01080	COG0107	imidazoleglycerol-phosphate synthase activity
NDN11_01125	COG0659	secondary active sulfate transmembrane transporter activity
NDN11_01150	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NDN11_01185	COG2226	methyltransferase
NDN11_01190	COG0427	acetyl-CoA hydrolase
NDN11_01240	COG0583	DNA-binding transcription factor activity
NDN11_01245	COG2851	Citrate transporter
NDN11_01255	COG0477	Major facilitator Superfamily
NDN11_01260	COG0789	Transcriptional regulator
NDN11_01265	COG3320	Male sterility
NDN11_01265	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NDN11_01270	COG4221	oxidoreductase activity
NDN11_01280	COG0488	(ABC) transporter
NDN11_01340	COG0833	amino acid
NDN11_01365	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NDN11_01375	COG3116	cell division
NDN11_01385	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDN11_01390	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NDN11_01400	COG2226	methyltransferase
NDN11_01450	COG0067	glutamate synthase
NDN11_01450	COG0069	glutamate synthase activity
NDN11_01450	COG0070	glutamate synthase
NDN11_01455	COG0493	'glutamate synthase
NDN11_01470	COG1704	LemA family
NDN11_01475	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
NDN11_01505	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NDN11_01510	COG3307	-O-antigen
NDN11_01530	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDN11_01540	COG0194	GDP metabolic process
NDN11_01545	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NDN11_01615	COG0228	four-way junction DNA binding
NDN11_01620	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NDN11_01630	COG0335	large ribosomal subunit rRNA binding
NDN11_01635	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NDN11_01655	COG5006	permease, DMT superfamily
NDN11_01660	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NDN11_01665	COG0277	FAD linked oxidase domain protein
NDN11_01685	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
NDN11_01690	COG2249	NAD(P)H dehydrogenase (quinone) activity
NDN11_01710	COG1289	transmembrane transporter activity
NDN11_01720	COG0628	permease
NDN11_01725	COG1192	Involved in chromosome partitioning
NDN11_01735	COG2226	methyltransferase
NDN11_01770	COG1404	Belongs to the peptidase S8 family
NDN11_01815	COG0617	tRNA 3'-terminal CCA addition
NDN11_01815	COG0517	IMP dehydrogenase activity
NDN11_01815	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
NDN11_01820	COG1983	PspC domain protein
NDN11_01830	COG1960	acyl-CoA dehydrogenase activity
NDN11_01845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDN11_01855	COG0408	coproporphyrinogen oxidase activity
NDN11_01885	COG0513	Belongs to the DEAD box helicase family
NDN11_01890	COG1127	ABC transporter
NDN11_01895	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NDN11_01900	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NDN11_01905	COG2854	intermembrane phospholipid transfer
NDN11_01915	COG0598	Magnesium transport protein CorA
NDN11_01925	COG0494	nUDIX hydrolase
NDN11_01930	COG1040	competence protein
NDN11_01935	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NDN11_01950	COG2937	Belongs to the GPAT DAPAT family
NDN11_01955	COG1946	Acyl-CoA thioesterase
NDN11_01960	COG1301	dicarboxylic acid transport
NDN11_01975	COG1959	2 iron, 2 sulfur cluster binding
NDN11_01985	COG0433	COG0433 Predicted ATPase
NDN11_02005	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NDN11_02025	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NDN11_02050	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NDN11_02090	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NDN11_02100	COG0200	Binds to the 23S rRNA
NDN11_02125	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NDN11_02155	COG1960	acyl-CoA dehydrogenase activity
NDN11_02160	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NDN11_02195	COG0697	spore germination
NDN11_02220	COG0339	signal peptide processing
NDN11_02230	COG0557	exoribonuclease II activity
NDN11_02275	COG0179	Fumarylacetoacetate (FAA) hydrolase
NDN11_02290	COG1295	ribonuclease BN
NDN11_02315	COG1785	Belongs to the alkaline phosphatase family
NDN11_02370	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDN11_02370	COG2813	Specifically methylates the guanine in position
NDN11_02380	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDN11_02390	COG4774	siderophore transport
NDN11_02400	COG3128	pkhd-type hydroxylase
NDN11_02410	COG4771	TonB-dependent receptor
NDN11_02420	COG0740	serine-type endopeptidase activity
NDN11_02440	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
NDN11_02440	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
NDN11_02455	COG0857	belongs to the CobB CobQ family
NDN11_02455	COG0280	phosphate acetyltransferase
NDN11_02460	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NDN11_02470	COG2267	carboxylic ester hydrolase activity
NDN11_02485	COG0793	Belongs to the peptidase S41A family
NDN11_02510	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NDN11_02525	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDN11_02530	COG1408	metallophosphoesterase
NDN11_02540	COG2199	diguanylate cyclase activity
NDN11_02595	COG1607	acyl-coa hydrolase
NDN11_02600	COG1956	GAF domain-containing protein
NDN11_02610	COG1666	GTP binding
NDN11_02640	COG0613	PHP domain protein
NDN11_02645	COG0583	DNA-binding transcription factor activity
NDN11_02650	COG0667	Aldo Keto reductase
NDN11_02655	COG3781	membrane
NDN11_02665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NDN11_02705	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NDN11_02715	COG1162	GTPase activity
NDN11_02720	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NDN11_02745	COG1538	Outer membrane efflux protein
NDN11_02750	COG1136	(ABC) transporter
NDN11_02750	COG0577	efflux transmembrane transporter activity
NDN11_02755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_02760	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NDN11_02785	COG0028	Belongs to the TPP enzyme family
NDN11_02790	COG0440	acetolactate synthase activity
NDN11_02815	COG1476	TRANSCRIPTIONal
NDN11_02835	COG1393	Belongs to the ArsC family
NDN11_02840	COG0640	Transcriptional regulator
NDN11_02845	COG0798	PFAM Bile acid sodium symporter
NDN11_02885	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDN11_02900	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
NDN11_02910	COG0726	polysaccharide deacetylase
NDN11_02915	COG0084	hydrolase, TatD family'
NDN11_02930	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NDN11_02950	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NDN11_02955	COG2197	response regulator
NDN11_02960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDN11_02960	COG2205	protein histidine kinase activity
NDN11_02970	COG2814	Major facilitator Superfamily
NDN11_03005	COG1051	belongs to the nudix hydrolase family
NDN11_03015	COG3622	Belongs to the hyi family
NDN11_03020	COG2084	Dehydrogenase
NDN11_03030	COG0784	Response regulator, receiver
NDN11_03030	COG5002	protein histidine kinase activity
NDN11_03030	COG2205	protein histidine kinase activity
NDN11_03050	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDN11_03060	COG3956	TIGRFAM MazG family protein
NDN11_03065	COG1555	photosystem II stabilization
NDN11_03070	COG0617	tRNA 3'-terminal CCA addition
NDN11_03075	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NDN11_03100	COG3028	Belongs to the UPF0307 family
NDN11_03110	COG0318	PFAM AMP-dependent synthetase and ligase
NDN11_03130	COG0625	glutathione transferase activity
NDN11_03145	COG1238	metal cluster binding
NDN11_03190	COG0072	phenylalanine-tRNA ligase activity
NDN11_03215	COG0248	Ppx GppA phosphatase
NDN11_03225	COG0037	tRNA processing
NDN11_03240	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
NDN11_03240	COG2755	lipolytic protein G-D-S-L family
NDN11_03245	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NDN11_03245	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NDN11_03270	COG1764	response to oxidative stress
NDN11_03275	COG1846	Transcriptional regulator
NDN11_03285	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDN11_03345	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NDN11_03350	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NDN11_03355	COG1595	DNA-templated transcription, initiation
NDN11_03365	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NDN11_03415	COG0494	nUDIX hydrolase
NDN11_03425	COG1214	PFAM Peptidase M22, glycoprotease
NDN11_03430	COG1968	undecaprenyl-diphosphatase activity
NDN11_03460	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NDN11_03470	COG2132	Multicopper oxidase
NDN11_03495	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NDN11_03500	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
NDN11_03505	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NDN11_03550	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDN11_03555	COG1063	alcohol dehydrogenase
NDN11_03575	COG1309	transcriptional regulator
NDN11_03580	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDN11_03585	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDN11_03665	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NDN11_03680	COG0745	RESPONSE REGULATOR receiver
NDN11_03685	COG2205	protein histidine kinase activity
NDN11_03695	COG2199	diguanylate cyclase activity
NDN11_03700	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDN11_03710	COG0649	NAD binding
NDN11_03710	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDN11_03720	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
NDN11_03735	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDN11_03745	COG0713	ATP synthesis coupled electron transport
NDN11_03750	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NDN11_03755	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDN11_03780	COG0583	DNA-binding transcription factor activity
NDN11_03800	COG0668	transmembrane transport
NDN11_03810	COG2081	HI0933 family
NDN11_03820	COG2515	1-aminocyclopropane-1-carboxylate deaminase
NDN11_03845	COG2226	methyltransferase
NDN11_03850	COG4716	Myosin-crossreactive antigen
NDN11_03860	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDN11_03870	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDN11_03870	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDN11_03895	COG0489	protein tyrosine kinase activity
NDN11_03900	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NDN11_03965	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NDN11_03980	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NDN11_04000	COG0730	response to heat
NDN11_04020	COG1196	nuclear chromosome segregation
NDN11_04030	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NDN11_04050	COG2814	Major facilitator Superfamily
NDN11_04055	COG3135	benzoate transporter
NDN11_04060	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_04065	COG0633	Ferredoxin
NDN11_04065	COG0543	2 iron, 2 sulfur cluster binding
NDN11_04070	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
NDN11_04075	COG4638	Rieske (2fe-2S)
NDN11_04080	COG0583	DNA-binding transcription factor activity
NDN11_04085	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NDN11_04095	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDN11_04095	COG0596	Alpha beta hydrolase
NDN11_04095	COG2226	methyltransferase
NDN11_04100	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NDN11_04100	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NDN11_04110	COG4106	trans-aconitate 2-methyltransferase activity
NDN11_04145	COG4206	TonB-dependent receptor
NDN11_04150	COG4166	transmembrane transport
NDN11_04160	COG0339	signal peptide processing
NDN11_04185	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NDN11_04190	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
NDN11_04205	COG0009	L-threonylcarbamoyladenylate synthase
NDN11_04210	COG3101	peptidyl-lysine hydroxylation
NDN11_04215	COG1399	metal-binding, possibly nucleic acid-binding protein
NDN11_04220	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NDN11_04230	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_04240	COG1652	LysM domain
NDN11_04245	COG0351	phosphomethylpyrimidine kinase
NDN11_04245	COG0352	thiamine-phosphate diphosphorylase activity
NDN11_04245	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NDN11_04255	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NDN11_04290	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDN11_04320	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NDN11_04335	COG0358	DNA primase activity
NDN11_04345	COG0564	pseudouridine synthase activity
NDN11_04350	COG1496	oxidoreductase activity
NDN11_04370	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NDN11_04395	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NDN11_04395	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDN11_04420	COG1981	membrane
NDN11_04435	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NDN11_04445	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NDN11_04465	COG0456	acetyltransferase
NDN11_04475	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NDN11_04480	COG0500	methyltransferase
NDN11_04485	COG0492	ferredoxin-NADP+ reductase activity
NDN11_04490	COG1674	ftsk spoiiie
NDN11_04505	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NDN11_04510	COG2894	cell division
NDN11_04515	COG0850	regulation of cytokinetic process
NDN11_04525	COG0204	Acyl-transferase
NDN11_04530	COG2885	chlorophyll binding
NDN11_04535	COG0210	DNA helicase
NDN11_04540	COG0756	dUTP diphosphatase activity
NDN11_04560	COG0121	glutamine amidotransferase
NDN11_04580	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDN11_04585	COG0735	belongs to the Fur family
NDN11_04610	COG0546	phosphoglycolate phosphatase activity
NDN11_04625	COG0420	3'-5' exonuclease activity
NDN11_04630	COG1024	Enoyl-CoA hydratase
NDN11_04650	COG1090	epimerase
NDN11_04655	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDN11_04665	COG2050	protein possibly involved in aromatic compounds catabolism
NDN11_04670	COG2226	methyltransferase
NDN11_04675	COG4638	Rieske (2fe-2S)
NDN11_04680	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
NDN11_04685	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NDN11_04685	COG0543	2 iron, 2 sulfur cluster binding
NDN11_04700	COG1566	PFAM secretion protein HlyD family protein
NDN11_04705	COG2814	Major facilitator Superfamily
NDN11_04715	COG0582	viral genome integration into host DNA
NDN11_04775	COG1401	restriction endodeoxyribonuclease activity
NDN11_04775	COG1401	restriction endodeoxyribonuclease activity
NDN11_04810	COG1231	oxidoreductase activity
NDN11_04865	COG4221	oxidoreductase activity
NDN11_04875	COG1309	transcriptional regulator
NDN11_04885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDN11_04925	COG2072	flavoprotein involved in K transport
NDN11_04950	COG3121	Chaperone
NDN11_04955	COG3188	usher protein
NDN11_04965	COG3121	Chaperone
NDN11_05020	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDN11_05025	COG0235	Class ii aldolase
NDN11_05030	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDN11_05040	COG4221	oxidoreductase activity
NDN11_05045	COG4689	acetoacetate decarboxylase
NDN11_05050	COG1902	pentaerythritol trinitrate reductase activity
NDN11_05050	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDN11_05065	COG0300	oxidoreductase activity
NDN11_05070	COG2072	flavoprotein involved in K transport
NDN11_05085	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDN11_05090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_05100	COG0789	Transcriptional regulator
NDN11_05115	COG2375	cellular response to nickel ion
NDN11_05115	COG1132	(ABC) transporter
NDN11_05120	COG1132	(ABC) transporter
NDN11_05125	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NDN11_05130	COG4605	iron ion homeostasis
NDN11_05135	COG4604	ABC transporter, ATP-binding protein
NDN11_05140	COG4607	ABC-type enterochelin transport system periplasmic component
NDN11_05145	COG4774	siderophore transport
NDN11_05205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_05230	COG2814	Major facilitator Superfamily
NDN11_05245	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDN11_05255	COG0154	amidase activity
NDN11_05270	COG4638	Rieske (2fe-2S)
NDN11_05280	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_05290	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDN11_05300	COG3733	amine oxidase
NDN11_05315	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_05320	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDN11_05325	COG0183	Belongs to the thiolase family
NDN11_05330	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NDN11_05335	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NDN11_05345	COG4829	muconolactone delta-isomerase
NDN11_05350	COG4948	Mandelate Racemase Muconate Lactonizing
NDN11_05355	COG0583	DNA-binding transcription factor activity
NDN11_05370	COG4771	TonB-dependent receptor
NDN11_05400	COG1595	DNA-templated transcription, initiation
NDN11_05425	COG1960	acyl-CoA dehydrogenase activity
NDN11_05450	COG4774	siderophore transport
NDN11_05465	COG0281	malic enzyme
NDN11_05475	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NDN11_05480	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NDN11_05485	COG3138	arginine N-succinyltransferase
NDN11_05490	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_05505	COG0833	amino acid
NDN11_05515	COG2995	paraquat-inducible protein a
NDN11_05520	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NDN11_05520	COG3008	intermembrane lipid transfer
NDN11_05530	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDN11_05535	COG0671	phosphoesterase, PA-phosphatase related
NDN11_05620	COG2885	chlorophyll binding
NDN11_05630	COG0725	ABC transporter, periplasmic molybdate-binding protein
NDN11_05635	COG4149	molybdate abc transporter
NDN11_05650	COG1230	cation diffusion facilitator family transporter
NDN11_05665	COG1280	lysine exporter protein (LysE YggA)
NDN11_05670	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NDN11_05675	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDN11_05680	COG1045	serine acetyltransferase
NDN11_05690	COG4521	taurine ABC transporter
NDN11_05695	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
NDN11_05700	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_05705	COG2175	clavaminate synthase activity
NDN11_05740	COG0589	response to stress
NDN11_05760	COG0242	peptide deformylase activity
NDN11_05765	COG2066	Belongs to the glutaminase family
NDN11_05790	COG0306	phosphate transporter
NDN11_05805	COG1115	amino acid carrier protein
NDN11_05810	COG1113	amino acid transport
NDN11_05820	COG0019	diaminopimelate decarboxylase activity
NDN11_05825	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NDN11_05830	COG1280	lysine exporter protein (LysE YggA)
NDN11_05835	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NDN11_05895	COG1671	Belongs to the UPF0178 family
NDN11_05910	COG4591	ABC-type transport system involved in lipoprotein release permease component
NDN11_05915	COG1136	(ABC) transporter
NDN11_05920	COG2333	competence protein COMEC
NDN11_05920	COG0658	competence protein
NDN11_05930	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NDN11_05930	COG0616	signal peptide processing
NDN11_05940	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NDN11_05950	COG0628	permease
NDN11_05955	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NDN11_05985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDN11_06000	COG2885	chlorophyll binding
NDN11_06005	COG0823	Involved in the tonB-independent uptake of proteins
NDN11_06025	COG0824	Thioesterase
NDN11_06055	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NDN11_06055	COG0047	phosphoribosylformylglycinamidine synthase activity
NDN11_06060	COG2814	Major facilitator Superfamily
NDN11_06075	COG1929	Belongs to the glycerate kinase type-1 family
NDN11_06080	COG1024	Enoyl-CoA hydratase
NDN11_06085	COG1051	belongs to the nudix hydrolase family
NDN11_06085	COG1056	cytidyltransferase-related domain
NDN11_06100	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NDN11_06115	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NDN11_06120	COG0602	queuosine metabolic process
NDN11_06135	COG0583	DNA-binding transcription factor activity
NDN11_06140	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
NDN11_06145	COG4208	sulfate ABC transporter
NDN11_06150	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NDN11_06160	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NDN11_06165	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NDN11_06170	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NDN11_06190	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDN11_06200	COG0481	GTPase activity
NDN11_06215	COG0571	ribonuclease III activity
NDN11_06220	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NDN11_06235	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NDN11_06270	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NDN11_06275	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NDN11_06280	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
NDN11_06290	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDN11_06305	COG2011	ABC-type metal ion transport system permease component
NDN11_06310	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NDN11_06315	COG1464	Belongs to the NlpA lipoprotein family
NDN11_06325	COG0138	bifunctional purine biosynthesis protein purh
NDN11_06330	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NDN11_06375	COG1477	protein flavinylation
NDN11_06385	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NDN11_06410	COG2252	PERMEase
NDN11_06415	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NDN11_06420	COG3038	cytochrome b561
NDN11_06430	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NDN11_06445	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NDN11_06450	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NDN11_06460	COG0456	acetyltransferase
NDN11_06470	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NDN11_06485	COG2308	Evidence 4 Homologs of previously reported genes of
NDN11_06495	COG1305	Transglutaminase-like
NDN11_06510	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NDN11_06515	COG0305	Participates in initiation and elongation during chromosome replication
NDN11_06520	COG1733	regulation of RNA biosynthetic process
NDN11_06525	COG2249	NAD(P)H dehydrogenase (quinone) activity
NDN11_06555	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NDN11_06560	COG1845	cytochrome c oxidase, subunit III
NDN11_06565	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NDN11_06570	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NDN11_06590	COG5001	Diguanylate cyclase
NDN11_06590	COG3300	MHYT domain
NDN11_06595	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_06630	COG0802	atpase or kinase
NDN11_06635	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NDN11_06645	COG1923	regulation of RNA biosynthetic process
NDN11_06650	COG0697	spore germination
NDN11_06660	COG2249	NAD(P)H dehydrogenase (quinone) activity
NDN11_06665	COG0778	Nitroreductase
NDN11_06670	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDN11_06680	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDN11_06685	COG0505	Belongs to the CarA family
NDN11_06695	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NDN11_06715	COG0583	DNA-binding transcription factor activity
NDN11_06720	COG0473	3-isopropylmalate dehydrogenase activity
NDN11_06730	COG0657	acetylesterase activity
NDN11_06735	COG4638	Rieske (2fe-2S)
NDN11_06740	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_06755	COG2985	domain, Protein
NDN11_06770	COG1414	Transcriptional regulator
NDN11_06775	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NDN11_06780	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NDN11_06785	COG0183	Belongs to the thiolase family
NDN11_06790	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NDN11_06795	COG0596	Alpha beta hydrolase
NDN11_06800	COG2271	Major facilitator Superfamily
NDN11_06805	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NDN11_06810	COG3485	protocatechuate 3,4-dioxygenase
NDN11_06815	COG3485	protocatechuate 3,4-dioxygenase
NDN11_06820	COG0710	3-dehydroquinate dehydratase activity
NDN11_06825	COG3420	alginic acid biosynthetic process
NDN11_06830	COG3659	wide pore channel activity
NDN11_06835	COG4993	Dehydrogenase
NDN11_06845	COG2351	hydroxyisourate hydrolase activity
NDN11_06850	COG2233	PERMEase
NDN11_06860	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDN11_06865	COG2186	Transcriptional regulator
NDN11_06885	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDN11_06895	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_06915	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
NDN11_06925	COG0583	DNA-binding transcription factor activity
NDN11_06935	COG2188	Transcriptional regulator
NDN11_06965	COG0010	Belongs to the arginase family
NDN11_06970	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NDN11_06995	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDN11_07000	COG1294	oxidase, subunit
NDN11_07005	COG1271	oxidase subunit
NDN11_07020	COG0243	molybdopterin cofactor binding
NDN11_07025	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NDN11_07030	COG2837	iron assimilation
NDN11_07040	COG1538	Outer membrane efflux protein
NDN11_07045	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDN11_07050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_07055	COG0745	RESPONSE REGULATOR receiver
NDN11_07065	COG5002	protein histidine kinase activity
NDN11_07070	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_07075	COG0667	Aldo Keto reductase
NDN11_07085	COG2358	TRAP transporter, solute receptor (TAXI family
NDN11_07095	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_07110	COG1116	anion transmembrane transporter activity
NDN11_07115	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_07125	COG3829	transcription factor binding
NDN11_07130	COG3585	molybdate ion transport
NDN11_07145	COG1309	transcriptional regulator
NDN11_07165	COG2072	flavoprotein involved in K transport
NDN11_07170	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
NDN11_07175	COG0501	Belongs to the peptidase M48B family
NDN11_07185	COG1765	OsmC-like protein
NDN11_07280	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NDN11_07300	COG3634	alkyl hydroperoxide reductase activity
NDN11_07320	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDN11_07335	COG1643	Atp-dependent helicase
NDN11_07350	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NDN11_07355	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDN11_07375	COG2951	lytic endotransglycosylase activity
NDN11_07380	COG0772	Belongs to the SEDS family
NDN11_07395	COG0842	Transport permease protein
NDN11_07400	COG1131	(ABC) transporter
NDN11_07445	COG0439	Biotin carboxylase
NDN11_07450	COG0864	Transcriptional regulator
NDN11_07455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDN11_07470	COG1116	anion transmembrane transporter activity
NDN11_07480	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NDN11_07485	COG0826	peptidase U32
NDN11_07495	COG4682	membrane
NDN11_07530	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDN11_07540	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
NDN11_07565	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NDN11_07595	COG0729	surface antigen
NDN11_07630	COG0471	metal ion transport
NDN11_07635	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDN11_07640	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NDN11_07645	COG4605	iron ion homeostasis
NDN11_07650	COG4604	ABC transporter, ATP-binding protein
NDN11_07655	COG4607	ABC-type enterochelin transport system periplasmic component
NDN11_07660	COG3647	Membrane
NDN11_07665	COG2814	Major facilitator Superfamily
NDN11_07675	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NDN11_07680	COG0583	DNA-binding transcription factor activity
NDN11_07705	COG1720	tRNA m6t6A37 methyltransferase activity
NDN11_07710	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NDN11_07735	COG0494	nUDIX hydrolase
NDN11_07745	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NDN11_07750	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NDN11_07755	COG3139	Protein of unknown function (DUF1315)
NDN11_07780	COG1960	acyl-CoA dehydrogenase activity
NDN11_07800	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NDN11_07810	COG2195	Cleaves the N-terminal amino acid of tripeptides
NDN11_07830	COG1690	Belongs to the RtcB family
NDN11_07835	COG1234	tRNA 3'-trailer cleavage
NDN11_07840	COG4650	regulator
NDN11_07885	COG2363	Small membrane protein
NDN11_07905	COG0513	Belongs to the DEAD box helicase family
NDN11_07915	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDN11_07925	COG3178	'Phosphotransferase
NDN11_07930	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NDN11_07940	COG1192	Involved in chromosome partitioning
NDN11_07945	COG1475	DNA binding
NDN11_07950	COG0811	peptide transport
NDN11_07960	COG1132	(ABC) transporter
NDN11_07965	COG1663	tetraacyldisaccharide 4'-kinase activity
NDN11_07995	COG0084	hydrolase, TatD family'
NDN11_08060	COG0776	regulation of translation
NDN11_08090	COG2431	L-lysine efflux transmembrane transporter activity
NDN11_08095	COG1309	transcriptional regulator
NDN11_08100	COG2814	Major facilitator Superfamily
NDN11_08115	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NDN11_08120	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NDN11_08160	COG0024	Methionine aminopeptidase
NDN11_08165	COG0583	DNA-binding transcription factor activity
NDN11_08170	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDN11_08180	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NDN11_08185	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NDN11_08190	COG0517	IMP dehydrogenase activity
NDN11_08215	COG0552	protein localization to endoplasmic reticulum
NDN11_08260	COG4890	Cyd operon protein YbgT
NDN11_08265	COG1294	oxidase, subunit
NDN11_08290	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NDN11_08315	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NDN11_08320	COG0569	domain protein
NDN11_08325	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NDN11_08345	COG1785	Belongs to the alkaline phosphatase family
NDN11_08365	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NDN11_08370	COG0542	response to heat
NDN11_08380	COG0488	(ABC) transporter
NDN11_08385	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDN11_08390	COG2267	carboxylic ester hydrolase activity
NDN11_08400	COG1902	pentaerythritol trinitrate reductase activity
NDN11_08400	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDN11_08435	COG0148	phosphopyruvate hydratase activity
NDN11_08440	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NDN11_08490	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_08510	COG1280	lysine exporter protein (LysE YggA)
NDN11_08540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDN11_08550	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
NDN11_08570	COG1802	Transcriptional regulator
NDN11_08580	COG2207	Transcriptional regulator
NDN11_08585	COG1063	alcohol dehydrogenase
NDN11_08600	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NDN11_08650	COG0697	spore germination
NDN11_08655	COG0583	DNA-binding transcription factor activity
NDN11_08660	COG1944	ATP diphosphatase activity
NDN11_08670	COG0633	Ferredoxin
NDN11_08685	COG2217	Heavy metal translocating P-type atpase
NDN11_08720	COG2205	protein histidine kinase activity
NDN11_08725	COG0745	RESPONSE REGULATOR receiver
NDN11_08740	COG3220	belongs to the UPF0276 family
NDN11_08750	COG1595	DNA-templated transcription, initiation
NDN11_08775	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NDN11_08790	COG0642	Histidine kinase
NDN11_08795	COG0745	RESPONSE REGULATOR receiver
NDN11_08825	COG3268	Saccharopine dehydrogenase
NDN11_08840	COG1902	pentaerythritol trinitrate reductase activity
NDN11_08840	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDN11_08855	COG0789	Transcriptional regulator
NDN11_08865	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NDN11_08870	COG0583	DNA-binding transcription factor activity
NDN11_08875	COG1595	DNA-templated transcription, initiation
NDN11_08885	COG4771	TonB-dependent receptor
NDN11_08925	COG2814	Major facilitator Superfamily
NDN11_08945	COG1294	oxidase, subunit
NDN11_08950	COG1271	oxidase subunit
NDN11_08995	COG0625	glutathione transferase activity
NDN11_09000	COG0583	DNA-binding transcription factor activity
NDN11_09010	COG1346	cytolysis
NDN11_09060	COG1309	transcriptional regulator
NDN11_09065	COG1595	DNA-templated transcription, initiation
NDN11_09105	COG0601	transmembrane transport
NDN11_09110	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NDN11_09130	COG1132	(ABC) transporter
NDN11_09135	COG1132	(ABC) transporter
NDN11_09155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_09160	COG3829	transcription factor binding
NDN11_09170	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NDN11_09185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_09190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_09200	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_09235	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_09250	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_09260	COG4628	conserved protein (DUF2132)
NDN11_09280	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NDN11_09285	COG1074	ATP-dependent DNA helicase activity
NDN11_09395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NDN11_09400	COG2267	carboxylic ester hydrolase activity
NDN11_09405	COG0671	phosphoesterase, PA-phosphatase related
NDN11_09405	COG2453	phosphatase
NDN11_09420	COG4589	Belongs to the CDS family
NDN11_09425	COG2207	Transcriptional regulator
NDN11_09430	COG2249	NAD(P)H dehydrogenase (quinone) activity
NDN11_09440	COG3712	iron ion homeostasis
NDN11_09445	COG1595	DNA-templated transcription, initiation
NDN11_09465	COG3706	GGDEF domain
NDN11_09480	COG0133	tryptophan synthase activity
NDN11_09490	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NDN11_09510	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NDN11_09565	COG3772	lysozyme
NDN11_09580	COG0537	adenosine 5'-monophosphoramidase activity
NDN11_09605	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDN11_09635	COG0730	response to heat
NDN11_09645	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NDN11_09660	COG4771	TonB-dependent receptor
NDN11_09685	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
NDN11_09700	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NDN11_09715	COG2223	nitrite transmembrane transporter activity
NDN11_09760	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDN11_09765	COG1414	Transcriptional regulator
NDN11_09780	COG3327	negative regulation of DNA-templated transcription, initiation
NDN11_09785	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
NDN11_09790	COG0183	Belongs to the thiolase family
NDN11_09795	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDN11_09800	COG1024	Enoyl-CoA hydratase
NDN11_09805	COG1024	Enoyl-CoA hydratase
NDN11_09810	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NDN11_09815	COG2151	metal-sulfur cluster biosynthetic enzyme
NDN11_09820	COG3396	Phenylacetate-CoA oxygenase
NDN11_09825	COG3460	Phenylacetate-CoA oxygenase
NDN11_09830	COG3396	Phenylacetate-CoA oxygenase
NDN11_09835	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_09835	COG2030	dehydratase
NDN11_09845	COG1960	acyl-CoA dehydrogenase activity
NDN11_09850	COG1960	acyl-CoA dehydrogenase activity
NDN11_09855	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDN11_09860	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDN11_09865	COG2207	Transcriptional regulator
NDN11_09870	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDN11_09880	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDN11_09905	COG0575	Belongs to the CDS family
NDN11_09910	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NDN11_09930	COG3852	Histidine kinase
NDN11_09935	COG2204	response regulator
NDN11_09990	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NDN11_10005	COG2920	part of a sulfur-relay system
NDN11_10010	COG0697	spore germination
NDN11_10015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDN11_10025	COG0303	'Molybdopterin
NDN11_10030	COG0315	cyclic pyranopterin monophosphate synthase activity
NDN11_10030	COG0521	Mo-molybdopterin cofactor biosynthetic process
NDN11_10050	COG0243	molybdopterin cofactor binding
NDN11_10065	COG0583	DNA-binding transcription factor activity
NDN11_10070	COG0477	Major facilitator Superfamily
NDN11_10080	COG0243	molybdopterin cofactor binding
NDN11_10085	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDN11_10090	COG2146	nitrite reductase [NAD(P)H] activity
NDN11_10090	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDN11_10095	COG2223	nitrite transmembrane transporter activity
NDN11_10105	COG1116	anion transmembrane transporter activity
NDN11_10105	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDN11_10120	COG0439	Biotin carboxylase
NDN11_10135	COG2814	Major facilitator Superfamily
NDN11_10140	COG1113	amino acid transport
NDN11_10150	COG0625	glutathione transferase activity
NDN11_10175	COG0069	glutamate synthase activity
NDN11_10210	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDN11_10250	COG1454	alcohol dehydrogenase
NDN11_10255	COG0824	Thioesterase
NDN11_10260	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
NDN11_10265	COG2850	peptidyl-arginine hydroxylation
NDN11_10305	COG3122	Protein conserved in bacteria
NDN11_10310	COG0668	transmembrane transport
NDN11_10360	COG0786	glutamate:sodium symporter activity
NDN11_10380	COG1132	(ABC) transporter
NDN11_10385	COG2030	dehydratase
NDN11_10400	COG3397	chitin binding
NDN11_10405	COG1027	Aspartate ammonia-lyase
NDN11_10410	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDN11_10420	COG0506	proline dehydrogenase activity
NDN11_10420	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NDN11_10420	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NDN11_10425	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
NDN11_10430	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NDN11_10440	COG3698	Phosphodiester glycosidase
NDN11_10485	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NDN11_10490	COG2353	YceI-like domain
NDN11_10510	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NDN11_10515	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NDN11_10535	COG3042	response to heat
NDN11_10545	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDN11_10550	COG1278	Cold shock
NDN11_10555	COG1278	Cold shock
NDN11_10575	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NDN11_10575	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NDN11_10600	COG3539	Fimbrial protein
NDN11_10615	COG3539	Fimbrial protein
NDN11_10640	COG0753	catalase activity
NDN11_10725	COG1335	isochorismatase
NDN11_10780	COG1464	Belongs to the NlpA lipoprotein family
NDN11_10785	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NDN11_10790	COG2011	ABC-type metal ion transport system permease component
NDN11_10795	COG0012	GTP binding
NDN11_10815	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDN11_10830	COG1942	4-Oxalocrotonate Tautomerase
NDN11_10875	COG1280	lysine exporter protein (LysE YggA)
NDN11_10885	COG0386	Belongs to the glutathione peroxidase family
NDN11_10895	COG0436	Aminotransferase
NDN11_10930	COG3634	alkyl hydroperoxide reductase activity
NDN11_10985	COG1286	toxin biosynthetic process
NDN11_11015	COG0778	Nitroreductase
NDN11_11040	COG0424	maF-like protein
NDN11_11065	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NDN11_11075	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_11080	COG0183	Belongs to the thiolase family
NDN11_11095	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NDN11_11100	COG0702	epimerase
NDN11_11105	COG0268	Binds directly to 16S ribosomal RNA
NDN11_11125	COG1218	3'(2'),5'-bisphosphate nucleotidase
NDN11_11130	COG1011	Hydrolase
NDN11_11135	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NDN11_11145	COG2137	regulation of response to DNA damage stimulus
NDN11_11160	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDN11_11165	COG0776	regulation of translation
NDN11_11190	COG0822	iron-sulfur transferase activity
NDN11_11195	COG0316	Belongs to the HesB IscA family
NDN11_11230	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NDN11_11250	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NDN11_11260	COG3135	benzoate transporter
NDN11_11265	COG0475	glutathione-regulated potassium exporter activity
NDN11_11265	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDN11_11290	COG0308	aminopeptidase N
NDN11_11325	COG2807	transmembrane transport
NDN11_11330	COG0590	tRNA wobble adenosine to inosine editing
NDN11_11350	COG0028	Belongs to the TPP enzyme family
NDN11_11365	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_11380	COG2271	Major facilitator Superfamily
NDN11_11385	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDN11_11395	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_11415	COG1414	Transcriptional regulator
NDN11_11420	COG4221	oxidoreductase activity
NDN11_11435	COG1522	sequence-specific DNA binding
NDN11_11440	COG5006	permease, DMT superfamily
NDN11_11445	COG2814	Major facilitator Superfamily
NDN11_11465	COG0318	PFAM AMP-dependent synthetase and ligase
NDN11_11470	COG1309	transcriptional regulator
NDN11_11475	COG1960	acyl-CoA dehydrogenase activity
NDN11_11480	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NDN11_11485	COG1024	Enoyl-CoA hydratase
NDN11_11490	COG4770	biotin carboxylase activity
NDN11_11500	COG0583	DNA-binding transcription factor activity
NDN11_11510	COG3214	Protein conserved in bacteria
NDN11_11520	COG2223	nitrite transmembrane transporter activity
NDN11_11545	COG2814	Major facilitator Superfamily
NDN11_11570	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDN11_11585	COG0765	amino acid transport
NDN11_11610	COG1113	amino acid transport
NDN11_11615	COG1570	exodeoxyribonuclease VII activity
NDN11_11630	COG2194	sulfuric ester hydrolase activity
NDN11_11650	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
NDN11_11665	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NDN11_11680	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NDN11_11695	COG1157	protein secretion by the type III secretion system
NDN11_11710	COG1766	The M ring may be actively involved in energy transduction
NDN11_11715	COG1677	Flagellar hook-basal body complex protein FliE
NDN11_11720	COG1558	bacterial-type flagellum-dependent cell motility
NDN11_11725	COG1815	bacterial-type flagellum-dependent cell motility
NDN11_11730	COG1706	bacterial-type flagellum-dependent cell motility
NDN11_11735	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NDN11_11745	COG4786	Flagellar basal body rod
NDN11_11755	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NDN11_11760	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NDN11_11765	COG1684	flagellar biosynthetic protein fliR
NDN11_11770	COG1987	bacterial-type flagellum assembly
NDN11_11800	COG1902	pentaerythritol trinitrate reductase activity
NDN11_11800	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDN11_11805	COG0697	spore germination
NDN11_11810	COG0583	DNA-binding transcription factor activity
NDN11_11825	COG1741	Belongs to the pirin family
NDN11_11865	COG0714	Associated with various cellular activities
NDN11_11870	COG2879	small protein
NDN11_11875	COG1966	Carbon starvation protein
NDN11_11880	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NDN11_11920	COG1067	ATP-dependent peptidase activity
NDN11_11925	COG0583	DNA-binding transcription factor activity
NDN11_11955	COG1686	Belongs to the peptidase S11 family
NDN11_11960	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NDN11_11975	COG0482	sulfurtransferase activity
NDN11_12015	COG1113	amino acid transport
NDN11_12045	COG0515	serine threonine protein kinase
NDN11_12045	COG2815	serine threonine protein kinase
NDN11_12080	COG0697	spore germination
NDN11_12115	COG1610	YqeY-like protein
NDN11_12130	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NDN11_12135	COG4783	chaperone-mediated protein folding
NDN11_12160	COG0702	epimerase
NDN11_12170	COG0583	DNA-binding transcription factor activity
NDN11_12175	COG0300	oxidoreductase activity
NDN11_12180	COG4221	oxidoreductase activity
NDN11_12185	COG1073	alpha beta
NDN11_12190	COG1073	alpha beta
NDN11_12195	COG2207	Transcriptional regulator
NDN11_12200	COG1902	pentaerythritol trinitrate reductase activity
NDN11_12205	COG2207	Transcriptional regulator
NDN11_12245	COG1629	transport
NDN11_12255	COG4770	biotin carboxylase activity
NDN11_12275	COG1914	H( )-stimulated, divalent metal cation uptake system
NDN11_12280	COG0583	DNA-binding transcription factor activity
NDN11_12290	COG1253	flavin adenine dinucleotide binding
NDN11_12305	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NDN11_12315	COG4122	O-methyltransferase activity
NDN11_12325	COG0110	maltose O-acetyltransferase activity
NDN11_12340	COG2274	protein secretion by the type I secretion system
NDN11_12345	COG1538	Outer membrane efflux protein
NDN11_12350	COG1137	ATPase activity
NDN11_12355	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NDN11_12365	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NDN11_12370	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NDN11_12370	COG0517	IMP dehydrogenase activity
NDN11_12390	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NDN11_12395	COG3015	lipoprotein NlpE involved in copper resistance
NDN11_12405	COG0052	Belongs to the universal ribosomal protein uS2 family
NDN11_12410	COG0024	Methionine aminopeptidase
NDN11_12420	COG2223	nitrite transmembrane transporter activity
NDN11_12440	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDN11_12445	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NDN11_12450	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NDN11_12455	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NDN11_12470	COG1253	flavin adenine dinucleotide binding
NDN11_12475	COG0222	ribosome binding
NDN11_12515	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NDN11_12525	COG1773	rubredoxin
NDN11_12530	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDN11_12540	COG0583	DNA-binding transcription factor activity
NDN11_12605	COG0556	nucleotide-excision repair
NDN11_12620	COG0436	Aminotransferase
NDN11_12665	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NDN11_12670	COG3161	chorismate lyase activity
NDN11_12675	COG0174	glutamine synthetase
NDN11_12680	COG0512	Glutamine amidotransferase of anthranilate synthase
NDN11_12685	COG1823	symporter activity
NDN11_12720	COG0302	gtp cyclohydrolase
NDN11_12740	COG3739	integral membrane protein
NDN11_12755	COG5001	Diguanylate cyclase
NDN11_12755	COG2203	Gaf domain
NDN11_12755	COG4251	negative regulation of phosphorylation
NDN11_12755	COG3706	GGDEF domain
NDN11_12765	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NDN11_12780	COG4172	Belongs to the ABC transporter superfamily
NDN11_12785	COG4239	(ABC) transporter, permease
NDN11_12790	COG4174	ABC transporter (Permease)
NDN11_12800	COG1388	LysM domain
NDN11_12800	COG0741	lytic transglycosylase activity
NDN11_12870	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDN11_12875	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDN11_12885	COG0006	proline dipeptidase activity
NDN11_12945	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NDN11_12960	COG3384	dioxygenase
NDN11_12970	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
NDN11_12975	COG2878	Part of a membrane complex involved in electron transport
NDN11_12980	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NDN11_13005	COG0768	penicillin binding
NDN11_13010	COG0742	ribosomal rna small subunit methyltransferase
NDN11_13035	COG0616	signal peptide processing
NDN11_13040	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NDN11_13050	COG0573	inorganic phosphate transmembrane transporter activity
NDN11_13055	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NDN11_13070	COG1113	amino acid transport
NDN11_13075	COG3961	Belongs to the TPP enzyme family
NDN11_13080	COG1522	sequence-specific DNA binding
NDN11_13085	COG1012	belongs to the aldehyde dehydrogenase family
NDN11_13095	COG0076	glutamate decarboxylase activity
NDN11_13100	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NDN11_13110	COG4772	TonB-dependent receptor
NDN11_13115	COG4772	TonB-dependent receptor
NDN11_13145	COG1309	transcriptional regulator
NDN11_13155	COG0783	Belongs to the Dps family
NDN11_13165	COG0564	pseudouridine synthase activity
NDN11_13180	COG0352	thiamine-phosphate diphosphorylase activity
NDN11_13190	COG3025	triphosphatase activity
NDN11_13205	COG0612	Peptidase, M16
NDN11_13235	COG1187	pseudouridine synthase activity
NDN11_13265	COG2351	hydroxyisourate hydrolase activity
NDN11_13275	COG1686	Belongs to the peptidase S11 family
NDN11_13280	COG1252	NADH dehydrogenase
NDN11_13290	COG0415	Belongs to the DNA photolyase family
NDN11_13305	COG1215	transferase activity, transferring glycosyl groups
NDN11_13335	COG2070	2-Nitropropane dioxygenase
NDN11_13365	COG0745	RESPONSE REGULATOR receiver
NDN11_13370	COG5002	protein histidine kinase activity
NDN11_13375	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NDN11_13380	COG4181	ATPase activity
NDN11_13395	COG0288	reversible hydration of carbon dioxide
NDN11_13410	COG4771	TonB-dependent receptor
NDN11_13430	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NDN11_13440	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NDN11_13475	COG1597	lipid kinase activity
NDN11_13480	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
NDN11_13510	COG2388	GCN5-related N-acetyl-transferase
NDN11_13550	COG1215	transferase activity, transferring glycosyl groups
NDN11_13555	COG0726	polysaccharide deacetylase
NDN11_13555	COG1649	PFAM Uncharacterised BCR, COG1649
NDN11_13570	COG4681	YaeQ
NDN11_13575	COG0523	cobalamin synthesis protein
NDN11_13585	COG1607	acyl-coa hydrolase
NDN11_13605	COG0583	DNA-binding transcription factor activity
NDN11_13615	COG1279	arginine transmembrane transporter activity
NDN11_13645	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NDN11_13680	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NDN11_13695	COG0741	lytic transglycosylase activity
NDN11_13700	COG0501	Belongs to the peptidase M48B family
NDN11_13710	COG2239	Acts as a magnesium transporter
NDN11_13725	COG0584	glycerophosphoryl diester phosphodiesterase
NDN11_13750	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NDN11_13755	COG2304	oxidoreductase activity
NDN11_13765	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NDN11_13770	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NDN11_13795	COG0505	Belongs to the CarA family
NDN11_13825	COG0589	response to stress
NDN11_13945	COG2321	neutral zinc metallopeptidase
NDN11_13950	COG2354	Protein conserved in bacteria
NDN11_13960	COG1585	Membrane protein implicated in regulation of membrane protease activity
NDN11_13965	COG2268	Band 7 protein
NDN11_13990	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDN11_14010	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NDN11_14015	COG1053	succinate dehydrogenase
NDN11_14020	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NDN11_14025	COG2009	succinate dehydrogenase
NDN11_14045	COG1054	Belongs to the UPF0176 family
NDN11_14050	COG0586	Pfam SNARE associated Golgi protein
NDN11_14055	COG0583	DNA-binding transcription factor activity
NDN11_14060	COG1280	lysine exporter protein (LysE YggA)
NDN11_14080	COG2921	Belongs to the UPF0250 family
NDN11_14090	COG0321	lipoyl(octanoyl) transferase activity
NDN11_14105	COG0531	amino acid
NDN11_14115	COG1733	regulation of RNA biosynthetic process
NDN11_14125	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NDN11_14130	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NDN11_14130	COG1648	precorrin-2 dehydrogenase activity
NDN11_14145	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NDN11_14175	COG0671	phosphoesterase, PA-phosphatase related
NDN11_14180	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDN11_14190	COG1538	Outer membrane efflux protein
NDN11_14195	COG0393	Putative heavy-metal-binding
NDN11_14200	COG0393	Putative heavy-metal-binding
NDN11_14215	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_14230	COG0525	valine-tRNA ligase activity
NDN11_14240	COG1943	Transposase
NDN11_14260	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_14265	COG2610	gluconate transmembrane transporter activity
NDN11_14270	COG0583	DNA-binding transcription factor activity
NDN11_14285	COG2031	fatty acid transporter
NDN11_14290	COG0004	ammonium transporteR
NDN11_14300	COG0765	amino acid transport
NDN11_14305	COG0765	amino acid transport
NDN11_14310	COG1126	abc transporter atp-binding protein
NDN11_14325	COG0642	Histidine kinase
NDN11_14330	COG0745	RESPONSE REGULATOR receiver
NDN11_14335	COG2194	sulfuric ester hydrolase activity
NDN11_14355	COG1752	Esterase of the alpha-beta hydrolase superfamily
NDN11_14370	COG2315	Protein conserved in bacteria
NDN11_14375	COG0142	geranyltranstransferase activity
NDN11_14385	COG1113	amino acid transport
NDN11_14395	COG0174	glutamine synthetase
NDN11_14405	COG4771	TonB-dependent receptor
NDN11_14415	COG0671	phosphoesterase, PA-phosphatase related
NDN11_14425	COG2851	Citrate transporter
NDN11_14430	COG2207	Transcriptional regulator
NDN11_14455	COG0745	RESPONSE REGULATOR receiver
NDN11_14460	COG2205	protein histidine kinase activity
NDN11_14465	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
NDN11_14470	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NDN11_14475	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
NDN11_14490	COG0560	Phosphoserine phosphatase
NDN11_14500	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDN11_14510	COG1530	ribonuclease E activity
NDN11_14515	COG0424	maF-like protein
NDN11_14525	COG1792	Involved in formation and maintenance of cell shape
NDN11_14530	COG1077	Cell shape determining protein MreB Mrl
NDN11_14535	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDN11_14545	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDN11_14600	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
NDN11_14605	COG1752	Esterase of the alpha-beta hydrolase superfamily
NDN11_14610	COG1115	amino acid carrier protein
NDN11_14615	COG0786	glutamate:sodium symporter activity
NDN11_14630	COG2814	Major facilitator Superfamily
NDN11_14635	COG1289	transmembrane transporter activity
NDN11_14645	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NDN11_14690	COG1376	ErfK ybiS ycfS ynhG family protein
NDN11_14695	COG2832	Protein of unknown function (DUF454)
NDN11_14710	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NDN11_14725	COG0840	transmembrane signaling receptor activity
NDN11_14755	COG3422	double-strand break repair
NDN11_14760	COG2824	Alkylphosphonate utilization operon protein PhnA
NDN11_14765	COG3189	MarR family transcriptional regulator
NDN11_14780	COG0354	folic acid binding
NDN11_14795	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NDN11_14805	COG4772	TonB-dependent receptor
NDN11_14830	COG1217	gtp-binding protein TYPA
NDN11_14835	COG2233	PERMEase
NDN11_14845	COG0833	amino acid
NDN11_14850	COG1690	Belongs to the RtcB family
NDN11_14860	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NDN11_14860	COG2885	chlorophyll binding
NDN11_14865	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NDN11_14865	COG2885	chlorophyll binding
NDN11_14875	COG0183	Belongs to the thiolase family
NDN11_14895	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDN11_14910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NDN11_14915	COG2207	Transcriptional regulator
NDN11_14945	COG0183	Belongs to the thiolase family
NDN11_14950	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDN11_14950	COG1024	Enoyl-CoA hydratase
NDN11_14970	COG2153	protein acetylation
NDN11_14980	COG1272	protein, Hemolysin III
NDN11_14985	COG0477	Major facilitator Superfamily
NDN11_15005	COG0450	alkyl hydroperoxide reductase
NDN11_15030	COG0285	dihydrofolate synthase activity
NDN11_15090	COG4206	TonB-dependent receptor
NDN11_15095	COG2096	Adenosyltransferase
NDN11_15115	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NDN11_15125	COG0745	RESPONSE REGULATOR receiver
NDN11_15130	COG2205	protein histidine kinase activity
NDN11_15140	COG1960	acyl-CoA dehydrogenase activity
NDN11_15145	COG1960	acyl-CoA dehydrogenase activity
NDN11_15195	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NDN11_15225	COG1442	glycosyl transferase family 8
NDN11_15225	COG1216	Glycosyl transferase, family 2
NDN11_15275	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NDN11_15280	COG5002	protein histidine kinase activity
NDN11_15325	COG1862	Preprotein translocase
NDN11_15335	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NDN11_15405	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NDN11_15410	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NDN11_15415	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NDN11_15425	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NDN11_15430	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NDN11_15440	COG0625	glutathione transferase activity
NDN11_15445	COG2969	positive regulation of protein catabolic process
NDN11_15500	COG4770	biotin carboxylase activity
NDN11_15510	COG1960	acyl-CoA dehydrogenase activity
NDN11_15515	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NDN11_15530	COG1309	transcriptional regulator
NDN11_15545	COG1960	acyl-CoA dehydrogenase activity
NDN11_15600	COG1183	phosphatidylcholine synthase activity
NDN11_15605	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NDN11_15635	COG0739	heme binding
NDN11_15635	COG0741	lytic transglycosylase activity
NDN11_15635	COG1196	nuclear chromosome segregation
NDN11_15645	COG1702	phosphate starvation-inducible protein PhoH
NDN11_15680	COG3878	Protein conserved in bacteria
NDN11_15725	COG0788	formyltetrahydrofolate deformylase activity
NDN11_15750	COG4651	solute:proton antiporter activity
NDN11_15750	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDN11_15780	COG0210	DNA helicase
NDN11_15805	COG1733	regulation of RNA biosynthetic process
NDN11_15815	COG2900	Belongs to the SlyX family
NDN11_15820	COG0488	(ABC) transporter
NDN11_15830	COG1560	Kdo2-lipid A biosynthetic process
NDN11_15905	COG0473	3-isopropylmalate dehydrogenase activity
NDN11_15920	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NDN11_15930	COG0583	DNA-binding transcription factor activity
NDN11_15950	COG0494	nUDIX hydrolase
NDN11_15965	COG0753	catalase activity
NDN11_15985	COG0583	DNA-binding transcription factor activity
NDN11_15990	COG0625	glutathione transferase activity
NDN11_16000	COG0546	phosphoglycolate phosphatase activity
NDN11_16015	COG1530	ribonuclease E activity
NDN11_16020	COG0318	PFAM AMP-dependent synthetase and ligase
NDN11_16035	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NDN11_16045	COG0534	Mate efflux family protein
NDN11_16050	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NDN11_16080	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDN11_16095	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NDN11_16095	COG0493	'glutamate synthase
NDN11_16105	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
NDN11_16115	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDN11_16130	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
NDN11_16140	COG0644	oxidoreductase
NDN11_16140	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
NDN11_16145	COG0425	Belongs to the sulfur carrier protein TusA family
NDN11_16150	COG4535	Mg2 and Co2 transporter CorC
NDN11_16155	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NDN11_16160	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDN11_16185	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NDN11_16190	COG0475	glutathione-regulated potassium exporter activity
NDN11_16190	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDN11_16215	COG0789	Transcriptional regulator
NDN11_16220	COG0598	Magnesium transport protein CorA
NDN11_16225	COG1301	dicarboxylic acid transport
NDN11_16230	COG1185	polyribonucleotide nucleotidyltransferase activity
NDN11_16235	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NDN11_16240	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NDN11_16245	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NDN11_16250	COG1074	ATP-dependent DNA helicase activity
NDN11_16255	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NDN11_16280	COG2226	methyltransferase
NDN11_16290	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NDN11_16295	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDN11_16310	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NDN11_16325	COG2111	Na H antiporter
NDN11_16325	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NDN11_16330	COG1006	Multisubunit Na H antiporter MnhC subunit
NDN11_16335	COG0651	ATP synthesis coupled electron transport
NDN11_16340	COG1863	multisubunit Na H antiporter MnhE subunit
NDN11_16345	COG2212	antiporter activity
NDN11_16350	COG1320	monovalent cation:proton antiporter activity
NDN11_16360	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NDN11_16370	COG0195	Participates in both transcription termination and antitermination
NDN11_16395	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NDN11_16420	COG0237	dephospho-CoA kinase activity
NDN11_16430	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDN11_16435	COG3123	guanosine phosphorylase activity
NDN11_16440	COG0497	DNA recombination
NDN11_16450	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NDN11_16480	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NDN11_16535	COG1132	(ABC) transporter
NDN11_16545	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
NDN11_16565	COG0326	Molecular chaperone. Has ATPase activity
NDN11_16580	COG2056	Na+-H+ antiporter family
NDN11_16630	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NDN11_16680	COG0546	phosphoglycolate phosphatase activity
NDN11_16685	COG1716	ATPase activity
NDN11_16730	COG0181	hydroxymethylbilane synthase activity
NDN11_16740	COG3275	phosphorelay sensor kinase activity
NDN11_16765	COG0494	nUDIX hydrolase
NDN11_16775	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NDN11_16780	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDN11_16785	COG0772	Belongs to the SEDS family
NDN11_16815	COG4974	Belongs to the 'phage' integrase family
NDN11_16820	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NDN11_16830	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NDN11_16850	COG2197	response regulator
NDN11_16865	COG0793	Belongs to the peptidase S41A family
NDN11_16870	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NDN11_16875	COG0795	lipopolysaccharide-transporting ATPase activity
NDN11_16880	COG0795	lipopolysaccharide-transporting ATPase activity
NDN11_16915	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDN11_16915	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDN11_16925	COG0004	ammonium transporteR
NDN11_16930	COG0347	Belongs to the P(II) protein family
NDN11_16965	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NDN11_16980	COG0318	PFAM AMP-dependent synthetase and ligase
NDN11_16990	COG2860	membrane
NDN11_17000	COG1253	flavin adenine dinucleotide binding
NDN11_17015	COG2814	Major facilitator Superfamily
NDN11_17030	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NDN11_17035	COG0745	RESPONSE REGULATOR receiver
NDN11_17040	COG2205	protein histidine kinase activity
NDN11_17045	COG4452	Inner membrane protein CreD
NDN11_17080	COG2814	Major facilitator Superfamily
NDN11_17090	COG0789	Transcriptional regulator
NDN11_17100	COG0655	NAD(P)H dehydrogenase (quinone) activity
NDN11_17120	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NDN11_17155	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDN11_17165	COG2814	Major facilitator Superfamily
NDN11_17170	COG1960	acyl-CoA dehydrogenase activity
NDN11_17175	COG0583	DNA-binding transcription factor activity
NDN11_17195	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDN11_17200	COG3162	membrane
NDN11_17205	COG2205	protein histidine kinase activity
NDN11_17205	COG0784	Response regulator, receiver
NDN11_17230	COG1652	LysM domain
NDN11_17235	COG0758	DNA mediated transformation
NDN11_17250	COG1309	transcriptional regulator
NDN11_17255	COG2814	Major facilitator Superfamily
NDN11_17270	COG0386	Belongs to the glutathione peroxidase family
NDN11_17285	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NDN11_17290	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
NDN11_17300	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NDN11_17340	COG1121	(ABC) transporter
NDN11_17345	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NDN11_17350	COG1280	lysine exporter protein (LysE YggA)
NDN11_17355	COG2837	iron assimilation
NDN11_17395	COG0735	belongs to the Fur family
NDN11_17410	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NDN11_17410	COG0519	Catalyzes the synthesis of GMP from XMP
NDN11_17415	COG4399	Belongs to the UPF0754 family
NDN11_17420	COG3111	PFAM Bacterial OB fold (BOF) protein
NDN11_17425	COG2259	Doxx family
NDN11_17430	COG0586	Pfam SNARE associated Golgi protein
NDN11_17445	COG1192	Involved in chromosome partitioning
NDN11_17455	COG0271	Belongs to the BolA IbaG family
NDN11_17470	COG0477	Major facilitator Superfamily
NDN11_17480	COG1024	Enoyl-CoA hydratase
NDN11_17485	COG1960	acyl-CoA dehydrogenase activity
NDN11_17490	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NDN11_17510	COG1113	amino acid transport
NDN11_17515	COG0251	oxidation-reduction process
NDN11_17540	COG0456	acetyltransferase
NDN11_17545	COG0564	pseudouridine synthase activity
NDN11_17600	COG1802	Transcriptional regulator
NDN11_17605	COG1448	Aminotransferase
NDN11_17610	COG0277	FAD linked oxidase domain protein
NDN11_17620	COG2186	Transcriptional regulator
NDN11_17630	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NDN11_17635	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NDN11_17650	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NDN11_17660	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NDN11_17670	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
NDN11_17700	COG0438	transferase activity, transferring glycosyl groups
NDN11_17720	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NDN11_17725	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NDN11_17730	COG1596	polysaccharide export
NDN11_17760	COG0728	peptidoglycan biosynthetic process
NDN11_17765	COG3023	N-Acetylmuramoyl-L-alanine amidase
NDN11_17825	COG0546	phosphoglycolate phosphatase activity
NDN11_17830	COG1028	Short-chain dehydrogenase reductase Sdr
NDN11_17840	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NDN11_17840	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NDN11_17845	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDN11_17850	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDN11_17855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDN11_17860	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDN11_17865	COG1116	anion transmembrane transporter activity
NDN11_17870	COG1309	transcriptional regulator
NDN11_17890	COG1040	competence protein
NDN11_17895	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NDN11_17905	COG0196	riboflavin kinase activity
NDN11_17910	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NDN11_17920	COG1047	Peptidyl-prolyl cis-trans
NDN11_17965	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NDN11_17970	COG0657	acetylesterase activity
NDN11_17985	COG0583	DNA-binding transcription factor activity
NDN11_17995	COG0443	Heat shock 70 kDa protein
NDN11_18000	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NDN11_18030	COG2951	lytic endotransglycosylase activity
NDN11_18035	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NDN11_18050	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NDN11_18075	COG0583	DNA-binding transcription factor activity
NDN11_18085	COG0861	Integral membrane protein TerC family
NDN11_18100	COG0754	glutathionylspermidine amidase activity
NDN11_18120	COG0402	S-adenosylhomocysteine deaminase activity
NDN11_18130	COG2261	transglycosylase associated protein
NDN11_18155	COG0706	membrane insertase activity