locus-tag class description NDN13_00005 PF13018 Extended Signal Peptide of Type V secretion system NDN13_00005 PF03895 YadA-like membrane anchor domain NDN13_00005 PF05658 Head domain of trimeric autotransporter adhesin NDN13_00005 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_00010 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_00010 PF05658 Head domain of trimeric autotransporter adhesin NDN13_00010 PF03895 YadA-like membrane anchor domain NDN13_00010 PF13018 Extended Signal Peptide of Type V secretion system NDN13_00015 PF04355 SmpA / OmlA family NDN13_00015 PF00691 OmpA family NDN13_00060 PF03695 Uncharacterised protein family (UPF0149) NDN13_00065 PF00557 Metallopeptidase family M24 NDN13_00065 PF05195 Aminopeptidase P, N-terminal domain NDN13_00070 PF01494 FAD binding domain NDN13_00075 PF01494 FAD binding domain NDN13_00085 PF13411 MerR HTH family regulatory protein NDN13_00095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN13_00105 PF02021 Uncharacterised protein family UPF0102 NDN13_00110 PF04972 BON domain NDN13_00115 PF00135 Carboxylesterase family NDN13_00120 PF09297 NADH pyrophosphatase zinc ribbon domain NDN13_00120 PF00293 NUDIX domain NDN13_00130 PF00929 Exonuclease NDN13_00135 PF01464 Transglycosylase SLT domain NDN13_00135 PF01476 LysM domain NDN13_00140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN13_00145 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_00150 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN13_00150 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_00155 PF00005 ABC transporter NDN13_00155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN13_00160 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_00160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_00170 PF00929 Exonuclease NDN13_00175 PF01979 Amidohydrolase family NDN13_00180 PF00990 Diguanylate cyclase, GGDEF domain NDN13_00180 PF01590 GAF domain NDN13_00180 PF00563 EAL domain NDN13_00180 PF00360 Phytochrome region NDN13_00190 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDN13_00195 PF05675 Protein of unknown function (DUF817) NDN13_00220 PF01227 GTP cyclohydrolase I NDN13_00235 PF00218 Indole-3-glycerol phosphate synthase NDN13_00240 PF00591 Glycosyl transferase family, a/b domain NDN13_00240 PF02885 Glycosyl transferase family, helical bundle domain NDN13_00245 PF00593 TonB dependent receptor NDN13_00245 PF07715 TonB-dependent Receptor Plug Domain NDN13_00255 PF00375 Sodium:dicarboxylate symporter family NDN13_00260 PF00117 Glutamine amidotransferase class-I NDN13_00265 PF00120 Glutamine synthetase, catalytic domain NDN13_00265 PF03951 Glutamine synthetase, beta-Grasp domain NDN13_00270 PF04345 Chorismate lyase NDN13_00275 PF01040 UbiA prenyltransferase family NDN13_00325 PF00155 Aminotransferase class I and II NDN13_00340 PF00990 Diguanylate cyclase, GGDEF domain NDN13_00340 PF17158 Membrane-associated sensor, integral membrane domain NDN13_00345 PF17757 UvrB interaction domain NDN13_00345 PF12344 Ultra-violet resistance protein B NDN13_00345 PF04851 Type III restriction enzyme, res subunit NDN13_00345 PF00271 Helicase conserved C-terminal domain NDN13_00345 PF02151 UvrB/uvrC motif NDN13_00360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN13_00360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN13_00375 PF01018 GTP1/OBG NDN13_00375 PF01926 50S ribosome-binding GTPase NDN13_00380 PF00696 Amino acid kinase family NDN13_00380 PF01472 PUA domain NDN13_00390 PF13416 Bacterial extracellular solute-binding protein NDN13_00395 PF00005 ABC transporter NDN13_00395 PF08402 TOBE domain NDN13_00405 PF07759 Protein of unknown function (DUF1615) NDN13_00410 PF01207 Dihydrouridine synthase (Dus) NDN13_00415 PF03466 LysR substrate binding domain NDN13_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00420 PF00561 alpha/beta hydrolase fold NDN13_00425 PF18113 Rubredoxin binding C-terminal domain NDN13_00425 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_00430 PF00301 Rubredoxin NDN13_00440 PF00152 tRNA synthetases class II (D, K and N) NDN13_00440 PF01336 OB-fold nucleic acid binding domain NDN13_00445 PF14052 Capsule assembly protein Wzi NDN13_00455 PF01507 Phosphoadenosine phosphosulfate reductase family NDN13_00460 PF00009 Elongation factor Tu GTP binding domain NDN13_00485 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN13_00485 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN13_00490 PF01595 Cyclin M transmembrane N-terminal domain NDN13_00490 PF00571 CBS domain NDN13_00490 PF03471 Transporter associated domain NDN13_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00495 PF03466 LysR substrate binding domain NDN13_00500 PF00463 Isocitrate lyase family NDN13_00505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN13_00505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN13_00510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN13_00510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN13_00515 PF01784 NIF3 (NGG1p interacting factor 3) NDN13_00520 PF13180 PDZ domain NDN13_00520 PF17820 PDZ domain NDN13_00535 PF07690 Major Facilitator Superfamily NDN13_00545 PF00557 Metallopeptidase family M24 NDN13_00550 PF00318 Ribosomal protein S2 NDN13_00555 PF00889 Elongation factor TS NDN13_00560 PF04170 NlpE N-terminal domain NDN13_00560 PF17185 NlpE C-terminal OB domain NDN13_00565 PF00444 Ribosomal protein L36 NDN13_00575 PF09190 DALR domain NDN13_00575 PF01406 tRNA synthetases class I (C) catalytic domain NDN13_00580 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NDN13_00585 PF00571 CBS domain NDN13_00585 PF01380 SIS domain NDN13_00600 PF03968 OstA-like protein NDN13_00605 PF00005 ABC transporter NDN13_00605 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN13_00610 PF02321 Outer membrane efflux protein NDN13_00615 PF03412 Peptidase C39 family NDN13_00615 PF00005 ABC transporter NDN13_00615 PF00664 ABC transporter transmembrane region NDN13_00625 PF01205 Uncharacterized protein family UPF0029 NDN13_00630 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_00640 PF01596 O-methyltransferase NDN13_00650 PF00037 4Fe-4S binding domain NDN13_00650 PF11953 Domain of unknown function (DUF3470) NDN13_00660 PF01624 MutS domain I NDN13_00660 PF05188 MutS domain II NDN13_00660 PF05192 MutS domain III NDN13_00660 PF05190 MutS family domain IV NDN13_00660 PF00488 MutS domain V NDN13_00670 PF01979 Amidohydrolase family NDN13_00670 PF13382 Adenine deaminase C-terminal domain NDN13_00690 PF03471 Transporter associated domain NDN13_00690 PF03741 Integral membrane protein TerC family NDN13_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00700 PF03466 LysR substrate binding domain NDN13_00705 PF01566 Natural resistance-associated macrophage protein NDN13_00710 PF03746 LamB/YcsF family NDN13_00715 PF07286 Protein of unknown function (DUF1445) NDN13_00725 PF02785 Biotin carboxylase C-terminal domain NDN13_00725 PF00289 Biotin carboxylase, N-terminal domain NDN13_00725 PF00364 Biotin-requiring enzyme NDN13_00725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_00735 PF00535 Glycosyl transferase family 2 NDN13_00755 PF00593 TonB dependent receptor NDN13_00755 PF07715 TonB-dependent Receptor Plug Domain NDN13_00770 PF03466 LysR substrate binding domain NDN13_00770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00780 PF03466 LysR substrate binding domain NDN13_00805 PF00717 Peptidase S24-like NDN13_00810 PF11799 impB/mucB/samB family C-terminal domain NDN13_00810 PF00817 impB/mucB/samB family NDN13_00810 PF13438 Domain of unknown function (DUF4113) NDN13_00815 PF12833 Helix-turn-helix domain NDN13_00815 PF06719 AraC-type transcriptional regulator N-terminus NDN13_00820 PF12146 Serine aminopeptidase, S33 NDN13_00825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_00830 PF12833 Helix-turn-helix domain NDN13_00830 PF06719 AraC-type transcriptional regulator N-terminus NDN13_00835 PF12146 Serine aminopeptidase, S33 NDN13_00840 PF12146 Serine aminopeptidase, S33 NDN13_00845 PF00106 short chain dehydrogenase NDN13_00850 PF00106 short chain dehydrogenase NDN13_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_00855 PF03466 LysR substrate binding domain NDN13_00860 PF02525 Flavodoxin-like fold NDN13_00870 PF12706 Beta-lactamase superfamily domain NDN13_00880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN13_00880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN13_00885 PF01553 Acyltransferase NDN13_00890 PF01435 Peptidase family M48 NDN13_00905 PF09424 Yqey-like protein NDN13_00910 PF01165 Ribosomal protein S21 NDN13_00915 PF00814 Glycoprotease family NDN13_00940 PF00892 EamA-like transporter family NDN13_00975 PF03793 PASTA domain NDN13_00975 PF00069 Protein kinase domain NDN13_01010 PF03466 LysR substrate binding domain NDN13_01010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_01015 PF04958 Arginine N-succinyltransferase beta subunit NDN13_01020 PF00324 Amino acid permease NDN13_01030 PF05257 CHAP domain NDN13_01030 PF01476 LysM domain NDN13_01045 PF00206 Lyase NDN13_01045 PF08328 Adenylosuccinate lyase C-terminal NDN13_01050 PF04356 Protein of unknown function (DUF489) NDN13_01060 PF00293 NUDIX domain NDN13_01065 PF03069 Acetamidase/Formamidase family NDN13_01080 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_01085 PF07943 Penicillin-binding protein 5, C-terminal domain NDN13_01085 PF00768 D-alanyl-D-alanine carboxypeptidase NDN13_01105 PF01975 Survival protein SurE NDN13_01110 PF01476 LysM domain NDN13_01110 PF01551 Peptidase family M23 NDN13_01115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_01115 PF03466 LysR substrate binding domain NDN13_01120 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN13_01120 PF13654 AAA domain NDN13_01125 PF07690 Major Facilitator Superfamily NDN13_01130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN13_01135 PF13593 SBF-like CPA transporter family (DUF4137) NDN13_01140 PF01197 Ribosomal protein L31 NDN13_01155 PF04055 Radical SAM superfamily NDN13_01160 PF09285 Elongation factor P, C-terminal NDN13_01160 PF08207 Elongation factor P (EF-P) KOW-like domain NDN13_01160 PF01132 Elongation factor P (EF-P) OB domain NDN13_01165 PF13722 5TM C-terminal transporter carbon starvation CstA NDN13_01165 PF02554 Carbon starvation protein CstA NDN13_01170 PF04328 Selenoprotein, putative NDN13_01175 PF17863 AAA lid domain NDN13_01175 PF07726 ATPase family associated with various cellular activities (AAA) NDN13_01185 PF11992 Domain of unknown function (DUF3488) NDN13_01185 PF13559 Domain of unknown function (DUF4129) NDN13_01185 PF01841 Transglutaminase-like superfamily NDN13_01255 PF00308 Bacterial dnaA protein NDN13_01255 PF08299 Bacterial dnaA protein helix-turn-helix NDN13_01255 PF11638 DnaA N-terminal domain NDN13_01465 PF11799 impB/mucB/samB family C-terminal domain NDN13_01465 PF00817 impB/mucB/samB family NDN13_01465 PF13438 Domain of unknown function (DUF4113) NDN13_01470 PF01726 LexA DNA binding domain NDN13_01470 PF00717 Peptidase S24-like NDN13_01500 PF02678 Pirin NDN13_01500 PF17954 Quercetinase C-terminal cupin domain NDN13_01505 PF00764 Arginosuccinate synthase NDN13_01510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_01510 PF03466 LysR substrate binding domain NDN13_01515 PF00892 EamA-like transporter family NDN13_01520 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_01520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_01530 PF01872 RibD C-terminal domain NDN13_01545 PF02705 K+ potassium transporter NDN13_01550 PF08019 Phosphoethanolamine transferase EptA/EptB NDN13_01550 PF00884 Sulfatase NDN13_01555 PF01323 DSBA-like thioredoxin domain NDN13_01565 PF02601 Exonuclease VII, large subunit NDN13_01565 PF13742 OB-fold nucleic acid binding domain NDN13_01570 PF00324 Amino acid permease NDN13_01580 PF18807 Tripartite Tc toxins repeat NDN13_01580 PF14431 YwqJ-like deaminase NDN13_01625 PF03527 RHS protein NDN13_01660 PF04972 BON domain NDN13_01660 PF00263 Bacterial type II and III secretion system protein NDN13_01660 PF13629 Pilus formation protein N terminal region NDN13_01665 PF00437 Type II/IV secretion system protein NDN13_01720 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_01725 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_01730 PF00005 ABC transporter NDN13_01735 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN13_01740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN13_01755 PF01638 HxlR-like helix-turn-helix NDN13_01760 PF07690 Major Facilitator Superfamily NDN13_01775 PF07690 Major Facilitator Superfamily NDN13_01780 PF07690 Major Facilitator Superfamily NDN13_01785 PF02311 AraC-like ligand binding domain NDN13_01785 PF12833 Helix-turn-helix domain NDN13_01790 PF06224 Winged helix DNA-binding domain NDN13_01795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_01795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_01795 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_01805 PF03466 LysR substrate binding domain NDN13_01810 PF00682 HMGL-like NDN13_01815 PF00364 Biotin-requiring enzyme NDN13_01815 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN13_01815 PF02785 Biotin carboxylase C-terminal domain NDN13_01815 PF00289 Biotin carboxylase, N-terminal domain NDN13_01815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_01820 PF00378 Enoyl-CoA hydratase/isomerase NDN13_01825 PF01039 Carboxyl transferase domain NDN13_01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_01830 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_01830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_01835 PF00440 Bacterial regulatory proteins, tetR family NDN13_01840 PF00501 AMP-binding enzyme NDN13_01840 PF13193 AMP-binding enzyme C-terminal domain NDN13_01845 PF06968 Biotin and Thiamin Synthesis associated domain NDN13_01845 PF04055 Radical SAM superfamily NDN13_01860 PF07690 Major Facilitator Superfamily NDN13_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_01865 PF03466 LysR substrate binding domain NDN13_01870 PF00202 Aminotransferase class-III NDN13_01875 PF00171 Aldehyde dehydrogenase family NDN13_01880 PF00324 Amino acid permease NDN13_01885 PF00892 EamA-like transporter family NDN13_01890 PF01037 Lrp/AsnC ligand binding domain NDN13_01895 PF00155 Aminotransferase class I and II NDN13_01895 PF00392 Bacterial regulatory proteins, gntR family NDN13_01900 PF00202 Aminotransferase class-III NDN13_01905 PF00171 Aldehyde dehydrogenase family NDN13_01910 PF07969 Amidohydrolase family NDN13_01920 PF01546 Peptidase family M20/M25/M40 NDN13_01920 PF07687 Peptidase dimerisation domain NDN13_01925 PF00202 Aminotransferase class-III NDN13_01930 PF00171 Aldehyde dehydrogenase family NDN13_01935 PF00324 Amino acid permease NDN13_01940 PF04371 Porphyromonas-type peptidyl-arginine deiminase NDN13_01950 PF00893 Small Multidrug Resistance protein NDN13_01955 PF00893 Small Multidrug Resistance protein NDN13_01960 PF04371 Porphyromonas-type peptidyl-arginine deiminase NDN13_01975 PF00106 short chain dehydrogenase NDN13_01980 PF01614 Bacterial transcriptional regulator NDN13_01980 PF09339 IclR helix-turn-helix domain NDN13_01985 PF00355 Rieske [2Fe-2S] domain NDN13_01995 PF00355 Rieske [2Fe-2S] domain NDN13_02010 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_02010 PF14759 Reductase C-terminal NDN13_02015 PF07690 Major Facilitator Superfamily NDN13_02025 PF12697 Alpha/beta hydrolase family NDN13_02035 PF03447 Homoserine dehydrogenase, NAD binding domain NDN13_02035 PF01958 Domain of unknown function DUF108 NDN13_02040 PF00171 Aldehyde dehydrogenase family NDN13_02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN13_02045 PF00205 Thiamine pyrophosphate enzyme, central domain NDN13_02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN13_02055 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_02055 PF12833 Helix-turn-helix domain NDN13_02060 PF00743 Flavin-binding monooxygenase-like NDN13_02070 PF00561 alpha/beta hydrolase fold NDN13_02075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_02075 PF03466 LysR substrate binding domain NDN13_02085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN13_02090 PF07690 Major Facilitator Superfamily NDN13_02100 PF02110 Hydroxyethylthiazole kinase family NDN13_02130 PF11940 Domain of unknown function (DUF3458) Ig-like fold NDN13_02130 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NDN13_02130 PF01433 Peptidase family M1 domain NDN13_02140 PF06271 RDD family NDN13_02150 PF02308 MgtC family NDN13_02155 PF02254 TrkA-N domain NDN13_02155 PF00999 Sodium/hydrogen exchanger family NDN13_02160 PF03594 Benzoate membrane transport protein NDN13_02165 PF01810 LysE type translocator NDN13_02170 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDN13_02175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_02175 PF03466 LysR substrate binding domain NDN13_02195 PF17757 UvrB interaction domain NDN13_02195 PF03461 TRCF domain NDN13_02195 PF00271 Helicase conserved C-terminal domain NDN13_02195 PF00270 DEAD/DEAH box helicase NDN13_02195 PF02559 CarD-like/TRCF domain NDN13_02205 PF00211 Adenylate and Guanylate cyclase catalytic domain NDN13_02210 PF02082 Transcriptional regulator NDN13_02220 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_02225 PF00012 Hsp70 protein NDN13_02230 PF07743 HSCB C-terminal oligomerisation domain NDN13_02230 PF00226 DnaJ domain NDN13_02235 PF01521 Iron-sulphur cluster biosynthesis NDN13_02240 PF01592 NifU-like N terminal domain NDN13_02245 PF00266 Aminotransferase class-V NDN13_02250 PF02082 Transcriptional regulator NDN13_02265 PF00216 Bacterial DNA-binding protein NDN13_02285 PF02631 RecX family NDN13_02290 PF00154 recA bacterial DNA recombination protein NDN13_02295 PF01479 S4 domain NDN13_02300 PF13419 Haloacid dehalogenase-like hydrolase NDN13_02305 PF00459 Inositol monophosphatase family NDN13_02320 PF12561 ToxR activated gene A lipoprotein domain NDN13_02320 PF00041 Fibronectin type III domain NDN13_02330 PF01649 Ribosomal protein S20 NDN13_02335 PF13460 NAD(P)H-binding NDN13_02340 PF03737 Aldolase/RraA NDN13_02360 PF00108 Thiolase, N-terminal domain NDN13_02360 PF02803 Thiolase, C-terminal domain NDN13_02375 PF00144 Beta-lactamase NDN13_02390 PF07690 Major Facilitator Superfamily NDN13_02400 PF02545 Maf-like protein NDN13_02410 PF00162 Phosphoglycerate kinase NDN13_02425 PF00881 Nitroreductase family NDN13_02430 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN13_02430 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN13_02450 PF01180 Dihydroorotate dehydrogenase NDN13_02460 PF00156 Phosphoribosyl transferase domain NDN13_02470 PF02673 Bacitracin resistance protein BacA NDN13_02500 PF05816 Toxic anion resistance protein (TelA) NDN13_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_02510 PF13192 Thioredoxin domain NDN13_02525 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_02530 PF00588 SpoU rRNA Methylase family NDN13_02535 PF14579 Helix-hairpin-helix motif NDN13_02535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDN13_02535 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDN13_02535 PF01336 OB-fold nucleic acid binding domain NDN13_02535 PF02811 PHP domain NDN13_02545 PF00155 Aminotransferase class I and II NDN13_02550 PF01641 SelR domain NDN13_02555 PF00255 Glutathione peroxidase NDN13_02560 PF12833 Helix-turn-helix domain NDN13_02560 PF01965 DJ-1/PfpI family NDN13_02565 PF01810 LysE type translocator NDN13_02570 PF00873 AcrB/AcrD/AcrF family NDN13_02575 PF13533 Biotin-lipoyl like NDN13_02580 PF01037 Lrp/AsnC ligand binding domain NDN13_02590 PF00593 TonB dependent receptor NDN13_02590 PF07715 TonB-dependent Receptor Plug Domain NDN13_02595 PF00155 Aminotransferase class I and II NDN13_02600 PF08335 GlnD PII-uridylyltransferase NDN13_02600 PF01966 HD domain NDN13_02600 PF01909 Nucleotidyltransferase domain NDN13_02605 PF02222 ATP-grasp domain NDN13_02610 PF01361 Tautomerase enzyme NDN13_02630 PF00027 Cyclic nucleotide-binding domain NDN13_02630 PF13545 Crp-like helix-turn-helix domain NDN13_02660 PF01926 50S ribosome-binding GTPase NDN13_02660 PF06071 Protein of unknown function (DUF933) NDN13_02665 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_02670 PF09383 NIL domain NDN13_02670 PF00005 ABC transporter NDN13_02675 PF03180 NLPA lipoprotein NDN13_02680 PF00296 Luciferase-like monooxygenase NDN13_02690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_02690 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN13_02705 PF01709 Transcriptional regulator NDN13_02715 PF03358 NADPH-dependent FMN reductase NDN13_02800 PF13953 PapC C-terminal domain NDN13_02800 PF13954 PapC N-terminal domain NDN13_02800 PF00577 Outer membrane usher protein NDN13_02805 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN13_02805 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN13_02810 PF16970 Type-1 fimbrial protein, A NDN13_02825 PF06968 Biotin and Thiamin Synthesis associated domain NDN13_02825 PF04055 Radical SAM superfamily NDN13_02830 PF08331 Domain of unknown function (DUF1730) NDN13_02835 PF03853 YjeF-related protein N-terminus NDN13_02835 PF01256 Carbohydrate kinase NDN13_02840 PF02075 Crossover junction endodeoxyribonuclease RuvC NDN13_02865 PF00313 'Cold-shock' DNA-binding domain NDN13_02870 PF00313 'Cold-shock' DNA-binding domain NDN13_02875 PF01266 FAD dependent oxidoreductase NDN13_02890 PF03891 Domain of unknown function (DUF333) NDN13_02910 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDN13_02910 PF02772 S-adenosylmethionine synthetase, central domain NDN13_02910 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDN13_02915 PF02779 Transketolase, pyrimidine binding domain NDN13_02915 PF02780 Transketolase, C-terminal domain NDN13_02915 PF00456 Transketolase, thiamine diphosphate binding domain NDN13_02930 PF04264 YceI-like domain NDN13_02935 PF01726 LexA DNA binding domain NDN13_02935 PF00717 Peptidase S24-like NDN13_02965 PF00583 Acetyltransferase (GNAT) family NDN13_02970 PF09857 Putative toxin of bacterial toxin-antitoxin pair NDN13_02990 PF05958 tRNA (Uracil-5-)-methyltransferase NDN13_02995 PF04229 GrpB protein NDN13_03000 PF01619 Proline dehydrogenase NDN13_03000 PF14850 DNA-binding domain of Proline dehydrogenase NDN13_03000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NDN13_03000 PF00171 Aldehyde dehydrogenase family NDN13_03005 PF01037 Lrp/AsnC ligand binding domain NDN13_03010 PF00474 Sodium:solute symporter family NDN13_03015 PF10415 Fumarase C C-terminus NDN13_03015 PF00206 Lyase NDN13_03020 PF18416 N-acetylglucosamine binding protein domain 2 NDN13_03020 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NDN13_03025 PF01597 Glycine cleavage H-protein NDN13_03030 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_03030 PF12833 Helix-turn-helix domain NDN13_03040 PF00664 ABC transporter transmembrane region NDN13_03040 PF00005 ABC transporter NDN13_03060 PF03616 Sodium/glutamate symporter NDN13_03110 PF00924 Mechanosensitive ion channel NDN13_03115 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NDN13_03125 PF00375 Sodium:dicarboxylate symporter family NDN13_03130 PF00916 Sulfate permease family NDN13_03130 PF01740 STAS domain NDN13_03155 PF08007 Cupin superfamily protein NDN13_03160 PF12169 DNA polymerase III subunits gamma and tau domain III NDN13_03160 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDN13_03160 PF12170 DNA polymerase III tau subunit V interacting with alpha NDN13_03165 PF00092 von Willebrand factor type A domain NDN13_03170 PF02342 TerD domain NDN13_03210 PF15608 PELOTA RNA binding domain NDN13_03210 PF11202 Phosphoribosyl transferase (PRTase) NDN13_03220 PF02342 TerD domain NDN13_03225 PF02342 TerD domain NDN13_03235 PF02342 TerD domain NDN13_03250 PF02342 TerD domain NDN13_03255 PF03061 Thioesterase superfamily NDN13_03260 PF00465 Iron-containing alcohol dehydrogenase NDN13_03290 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN13_03295 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDN13_03295 PF01565 FAD binding domain NDN13_03310 PF01645 Conserved region in glutamate synthase NDN13_03320 PF00171 Aldehyde dehydrogenase family NDN13_03325 PF00465 Iron-containing alcohol dehydrogenase NDN13_03335 PF17287 POTRA domain NDN13_03335 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NDN13_03335 PF08479 POTRA domain, ShlB-type NDN13_03350 PF04829 Pre-toxin domain with VENN motif NDN13_03350 PF13332 Hemagglutinin repeat NDN13_03350 PF05594 Haemagluttinin repeat NDN13_03380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN13_03395 PF02798 Glutathione S-transferase, N-terminal domain NDN13_03395 PF14497 Glutathione S-transferase, C-terminal domain NDN13_03405 PF00324 Amino acid permease NDN13_03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_03410 PF03466 LysR substrate binding domain NDN13_03415 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_03420 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN13_03420 PF00355 Rieske [2Fe-2S] domain NDN13_03425 PF00171 Aldehyde dehydrogenase family NDN13_03435 PF18113 Rubredoxin binding C-terminal domain NDN13_03435 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_03440 PF01266 FAD dependent oxidoreductase NDN13_03440 PF00355 Rieske [2Fe-2S] domain NDN13_03460 PF00293 NUDIX domain NDN13_03465 PF12832 MFS_1 like family NDN13_03470 PF01425 Amidase NDN13_03480 PF02785 Biotin carboxylase C-terminal domain NDN13_03480 PF00289 Biotin carboxylase, N-terminal domain NDN13_03480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_03485 PF00364 Biotin-requiring enzyme NDN13_03490 PF01220 Dehydroquinase class II NDN13_03495 PF00005 ABC transporter NDN13_03505 PF07690 Major Facilitator Superfamily NDN13_03510 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN13_03510 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_03510 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN13_03510 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN13_03510 PF13806 Rieske-like [2Fe-2S] domain NDN13_03510 PF04324 BFD-like [2Fe-2S] binding domain NDN13_03515 PF04324 BFD-like [2Fe-2S] binding domain NDN13_03515 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN13_03515 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_03515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN13_03515 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN13_03520 PF04324 BFD-like [2Fe-2S] binding domain NDN13_03520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN13_03520 PF00384 Molybdopterin oxidoreductase NDN13_03520 PF01568 Molydopterin dinucleotide binding domain NDN13_03525 PF12804 MobA-like NTP transferase domain NDN13_03530 PF06779 Uncharacterised MFS-type transporter YbfB NDN13_03535 PF03466 LysR substrate binding domain NDN13_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_03540 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_03540 PF00107 Zinc-binding dehydrogenase NDN13_03545 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN13_03550 PF05853 beta-keto acid cleavage enzyme NDN13_03555 PF07690 Major Facilitator Superfamily NDN13_03565 PF00355 Rieske [2Fe-2S] domain NDN13_03570 PF03601 Conserved hypothetical protein 698 NDN13_03590 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_03600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN13_03600 PF01568 Molydopterin dinucleotide binding domain NDN13_03600 PF00384 Molybdopterin oxidoreductase NDN13_03605 PF04055 Radical SAM superfamily NDN13_03605 PF06463 Molybdenum Cofactor Synthesis C NDN13_03615 PF02391 MoaE protein NDN13_03620 PF01967 MoaC family NDN13_03620 PF00994 Probable molybdopterin binding domain NDN13_03625 PF03454 MoeA C-terminal region (domain IV) NDN13_03625 PF03453 MoeA N-terminal region (domain I and II) NDN13_03625 PF00994 Probable molybdopterin binding domain NDN13_03630 PF01638 HxlR-like helix-turn-helix NDN13_03635 PF00155 Aminotransferase class I and II NDN13_03635 PF00392 Bacterial regulatory proteins, gntR family NDN13_03640 PF00892 EamA-like transporter family NDN13_03645 PF04358 DsrC like protein NDN13_03660 PF02635 DsrE/DsrF-like family NDN13_03665 PF16363 GDP-mannose 4,6 dehydratase NDN13_03670 PF10415 Fumarase C C-terminus NDN13_03670 PF00206 Lyase NDN13_03680 PF01266 FAD dependent oxidoreductase NDN13_03690 PF02542 YgbB family NDN13_03700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN13_03700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN13_03705 PF00440 Bacterial regulatory proteins, tetR family NDN13_03710 PF00158 Sigma-54 interaction domain NDN13_03710 PF02954 Bacterial regulatory protein, Fis family NDN13_03710 PF00072 Response regulator receiver domain NDN13_03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_03715 PF00512 His Kinase A (phospho-acceptor) domain NDN13_03715 PF00989 PAS fold NDN13_03720 PF00919 Uncharacterized protein family UPF0004 NDN13_03720 PF04055 Radical SAM superfamily NDN13_03720 PF18693 TRAM domain NDN13_03725 PF00696 Amino acid kinase family NDN13_03730 PF01765 Ribosome recycling factor NDN13_03735 PF01255 Putative undecaprenyl diphosphate synthase NDN13_03745 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDN13_03745 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDN13_03745 PF13288 DXP reductoisomerase C-terminal domain NDN13_03750 PF13180 PDZ domain NDN13_03750 PF17820 PDZ domain NDN13_03750 PF02163 Peptidase family M50 NDN13_03755 PF07244 Surface antigen variable number repeat NDN13_03755 PF01103 Surface antigen NDN13_03765 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDN13_03765 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_03770 PF07977 FabA-like domain NDN13_03775 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_03775 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDN13_03780 PF12852 Cupin NDN13_03780 PF12833 Helix-turn-helix domain NDN13_03785 PF00487 Fatty acid desaturase NDN13_03790 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_03790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN13_03795 PF08521 Two-component sensor kinase N-terminal NDN13_03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_03795 PF00512 His Kinase A (phospho-acceptor) domain NDN13_03800 PF00486 Transcriptional regulatory protein, C terminal NDN13_03800 PF00072 Response regulator receiver domain NDN13_03805 PF02683 Cytochrome C biogenesis protein transmembrane region NDN13_03805 PF11412 Disulphide bond corrector protein DsbC NDN13_03810 PF08534 Redoxin NDN13_03815 PF13098 Thioredoxin-like domain NDN13_03820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_03820 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_03820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_03825 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_03825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_03825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_03835 PF00171 Aldehyde dehydrogenase family NDN13_03835 PF01575 MaoC like domain NDN13_03840 PF05138 Phenylacetic acid catabolic protein NDN13_03845 PF06243 Phenylacetic acid degradation B NDN13_03850 PF05138 Phenylacetic acid catabolic protein NDN13_03855 PF01883 Iron-sulfur cluster assembly protein NDN13_03860 PF00970 Oxidoreductase FAD-binding domain NDN13_03860 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_03860 PF00175 Oxidoreductase NAD-binding domain NDN13_03865 PF00378 Enoyl-CoA hydratase/isomerase NDN13_03870 PF00378 Enoyl-CoA hydratase/isomerase NDN13_03875 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN13_03875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN13_03875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN13_03880 PF02803 Thiolase, C-terminal domain NDN13_03880 PF00108 Thiolase, N-terminal domain NDN13_03885 PF14535 AMP-binding enzyme C-terminal domain NDN13_03885 PF00501 AMP-binding enzyme NDN13_03890 PF08223 PaaX-like protein C-terminal domain NDN13_03890 PF07848 PaaX-like protein NDN13_03895 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_03900 PF00171 Aldehyde dehydrogenase family NDN13_03905 PF01614 Bacterial transcriptional regulator NDN13_03905 PF09339 IclR helix-turn-helix domain NDN13_03910 PF01494 FAD binding domain NDN13_03920 PF03109 ABC1 family NDN13_03930 PF04073 Aminoacyl-tRNA editing domain NDN13_03935 PF06276 Ferric iron reductase FhuF-like transporter NDN13_03935 PF04183 IucA / IucC family NDN13_03940 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN13_03945 PF06276 Ferric iron reductase FhuF-like transporter NDN13_03945 PF04183 IucA / IucC family NDN13_03960 PF07690 Major Facilitator Superfamily NDN13_03965 PF07715 TonB-dependent Receptor Plug Domain NDN13_03965 PF00593 TonB dependent receptor NDN13_03975 PF13419 Haloacid dehalogenase-like hydrolase NDN13_03985 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NDN13_03990 PF02277 Phosphoribosyltransferase NDN13_04005 PF02654 Cobalamin-5-phosphate synthase NDN13_04015 PF07715 TonB-dependent Receptor Plug Domain NDN13_04015 PF00593 TonB dependent receptor NDN13_04035 PF00793 DAHP synthetase I family NDN13_04040 PF01925 Sulfite exporter TauE/SafE NDN13_04080 PF02684 Lipid-A-disaccharide synthetase NDN13_04105 PF00083 Sugar (and other) transporter NDN13_04105 PF07690 Major Facilitator Superfamily NDN13_04110 PF00491 Arginase family NDN13_04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04115 PF03466 LysR substrate binding domain NDN13_04125 PF01230 HIT domain NDN13_04150 PF00893 Small Multidrug Resistance protein NDN13_04175 PF00857 Isochorismatase family NDN13_04190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN13_04190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN13_04200 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN13_04205 PF02575 YbaB/EbfC DNA-binding family NDN13_04210 PF02132 RecR protein NDN13_04210 PF13662 Toprim domain NDN13_04215 PF01612 3'-5' exonuclease NDN13_04215 PF00570 HRDC domain NDN13_04220 PF05166 YcgL domain NDN13_04230 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_04230 PF17862 AAA+ lid domain NDN13_04230 PF01434 Peptidase family M41 NDN13_04240 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_04245 PF05175 Methyltransferase small domain NDN13_04250 PF01264 Chorismate synthase NDN13_04255 PF00990 Diguanylate cyclase, GGDEF domain NDN13_04265 PF05506 Domain of unknown function (DUF756) NDN13_04265 PF04185 Phosphoesterase family NDN13_04275 PF02525 Flavodoxin-like fold NDN13_04280 PF12833 Helix-turn-helix domain NDN13_04280 PF02311 AraC-like ligand binding domain NDN13_04300 PF00782 Dual specificity phosphatase, catalytic domain NDN13_04305 PF12146 Serine aminopeptidase, S33 NDN13_04305 PF12147 Putative methyltransferase NDN13_04310 PF01066 CDP-alcohol phosphatidyltransferase NDN13_04315 PF09905 DNA-binding protein VF530 NDN13_04330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04330 PF03466 LysR substrate binding domain NDN13_04340 PF12706 Beta-lactamase superfamily domain NDN13_04350 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_04360 PF00144 Beta-lactamase NDN13_04365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04365 PF03466 LysR substrate binding domain NDN13_04380 PF00698 Acyl transferase domain NDN13_04385 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NDN13_04395 PF01039 Carboxyl transferase domain NDN13_04400 PF06857 Malonate decarboxylase delta subunit (MdcD) NDN13_04405 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NDN13_04410 PF16957 Malonate decarboxylase, alpha subunit, transporter NDN13_04415 PF00440 Bacterial regulatory proteins, tetR family NDN13_04425 PF00561 alpha/beta hydrolase fold NDN13_04430 PF07859 alpha/beta hydrolase fold NDN13_04440 PF01593 Flavin containing amine oxidoreductase NDN13_04450 PF07715 TonB-dependent Receptor Plug Domain NDN13_04450 PF00593 TonB dependent receptor NDN13_04455 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN13_04455 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN13_04470 PF02649 Type I GTP cyclohydrolase folE2 NDN13_04475 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN13_04480 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_04480 PF00101 Ribulose bisphosphate carboxylase, small chain NDN13_04485 PF01979 Amidohydrolase family NDN13_04500 PF01126 Heme oxygenase NDN13_04510 PF04542 Sigma-70 region 2 NDN13_04510 PF08281 Sigma-70, region 4 NDN13_04515 PF04172 LrgB-like family NDN13_04520 PF03788 LrgA family NDN13_04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04525 PF03466 LysR substrate binding domain NDN13_04530 PF02798 Glutathione S-transferase, N-terminal domain NDN13_04535 PF00155 Aminotransferase class I and II NDN13_04535 PF00392 Bacterial regulatory proteins, gntR family NDN13_04540 PF02627 Carboxymuconolactone decarboxylase family NDN13_04585 PF01654 Cytochrome bd terminal oxidase subunit I NDN13_04590 PF02322 Cytochrome bd terminal oxidase subunit II NDN13_04600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_04600 PF12833 Helix-turn-helix domain NDN13_04610 PF07690 Major Facilitator Superfamily NDN13_04630 PF01126 Heme oxygenase NDN13_04640 PF04575 Protein of unknown function (DUF560) NDN13_04650 PF00593 TonB dependent receptor NDN13_04650 PF07715 TonB-dependent Receptor Plug Domain NDN13_04660 PF08281 Sigma-70, region 4 NDN13_04660 PF04542 Sigma-70 region 2 NDN13_04665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04665 PF03466 LysR substrate binding domain NDN13_04670 PF02525 Flavodoxin-like fold NDN13_04680 PF13411 MerR HTH family regulatory protein NDN13_04690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_04695 PF00561 alpha/beta hydrolase fold NDN13_04705 PF03435 Saccharopine dehydrogenase NADP binding domain NDN13_04735 PF00072 Response regulator receiver domain NDN13_04735 PF00486 Transcriptional regulatory protein, C terminal NDN13_04740 PF00512 His Kinase A (phospho-acceptor) domain NDN13_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_04740 PF08521 Two-component sensor kinase N-terminal NDN13_04745 PF05175 Methyltransferase small domain NDN13_04780 PF04542 Sigma-70 region 2 NDN13_04780 PF08281 Sigma-70, region 4 NDN13_04790 PF05114 Protein of unknown function (DUF692) NDN13_04805 PF00072 Response regulator receiver domain NDN13_04805 PF00486 Transcriptional regulatory protein, C terminal NDN13_04810 PF00672 HAMP domain NDN13_04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_04810 PF00512 His Kinase A (phospho-acceptor) domain NDN13_04820 PF01447 Thermolysin metallopeptidase, catalytic domain NDN13_04820 PF02868 Thermolysin metallopeptidase, alpha-helical domain NDN13_04820 PF04389 Peptidase family M28 NDN13_04825 PF01425 Amidase NDN13_04830 PF00196 Bacterial regulatory proteins, luxR family NDN13_04840 PF00743 Flavin-binding monooxygenase-like NDN13_04845 PF00403 Heavy-metal-associated domain NDN13_04850 PF00376 MerR family regulatory protein NDN13_04850 PF09278 MerR, DNA binding NDN13_04860 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_04870 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NDN13_04870 PF18381 YcaO cyclodehydratase C-terminal domain NDN13_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04875 PF03466 LysR substrate binding domain NDN13_04880 PF00892 EamA-like transporter family NDN13_04915 PF07690 Major Facilitator Superfamily NDN13_04920 PF13533 Biotin-lipoyl like NDN13_04930 PF02558 Ketopantoate reductase PanE/ApbA NDN13_04930 PF08546 Ketopantoate reductase PanE/ApbA C terminal NDN13_04935 PF00072 Response regulator receiver domain NDN13_04935 PF00486 Transcriptional regulatory protein, C terminal NDN13_04940 PF01965 DJ-1/PfpI family NDN13_04945 PF14765 Polyketide synthase dehydratase NDN13_04945 PF00550 Phosphopantetheine attachment site NDN13_04945 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN13_04945 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN13_04945 PF16197 Ketoacyl-synthetase C-terminal extension NDN13_04945 PF08659 KR domain NDN13_04945 PF00107 Zinc-binding dehydrogenase NDN13_04945 PF00698 Acyl transferase domain NDN13_04945 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_04950 PF12833 Helix-turn-helix domain NDN13_04950 PF06719 AraC-type transcriptional regulator N-terminus NDN13_04960 PF07729 FCD domain NDN13_04960 PF00392 Bacterial regulatory proteins, gntR family NDN13_04965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_04965 PF00364 Biotin-requiring enzyme NDN13_04965 PF02785 Biotin carboxylase C-terminal domain NDN13_04965 PF00289 Biotin carboxylase, N-terminal domain NDN13_04970 PF01425 Amidase NDN13_04975 PF03459 TOBE domain NDN13_04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_04980 PF00107 Zinc-binding dehydrogenase NDN13_04980 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_04985 PF02583 Metal-sensitive transcriptional repressor NDN13_04990 PF13091 PLD-like domain NDN13_05030 PF00580 UvrD/REP helicase N-terminal domain NDN13_05030 PF13361 UvrD-like helicase C-terminal domain NDN13_05100 PF01476 LysM domain NDN13_05100 PF08525 Opacity-associated protein A N-terminal motif NDN13_05100 PF01551 Peptidase family M23 NDN13_05125 PF08346 AntA/AntB antirepressor NDN13_05125 PF10548 P22AR C-terminal domain NDN13_05335 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN13_05440 PF00753 Metallo-beta-lactamase superfamily NDN13_05450 PF04143 Sulphur transport NDN13_05470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDN13_05475 PF04977 Septum formation initiator NDN13_05480 PF00113 Enolase, C-terminal TIM barrel domain NDN13_05480 PF03952 Enolase, N-terminal domain NDN13_05485 PF00793 DAHP synthetase I family NDN13_05490 PF06418 CTP synthase N-terminus NDN13_05490 PF00117 Glutamine amidotransferase class-I NDN13_05515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_05515 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_05525 PF12697 Alpha/beta hydrolase family NDN13_05530 PF00793 DAHP synthetase I family NDN13_05535 PF12848 ABC transporter NDN13_05535 PF00005 ABC transporter NDN13_05535 PF16326 ABC transporter C-terminal domain NDN13_05550 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDN13_05555 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_05555 PF07724 AAA domain (Cdc48 subfamily) NDN13_05555 PF17871 AAA lid domain NDN13_05555 PF02861 Clp amino terminal domain, pathogenicity island component NDN13_05555 PF10431 C-terminal, D2-small domain, of ClpB protein NDN13_05560 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDN13_05570 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN13_05570 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN13_05590 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDN13_05595 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_05595 PF00585 C-terminal regulatory domain of Threonine dehydratase NDN13_05600 PF02080 TrkA-C domain NDN13_05600 PF02254 TrkA-N domain NDN13_05605 PF02386 Cation transport protein NDN13_05615 PF02253 Phospholipase A1 NDN13_05620 PF00675 Insulinase (Peptidase family M16) NDN13_05620 PF05193 Peptidase M16 inactive domain NDN13_05620 PF08367 Peptidase M16C associated NDN13_05630 PF00294 pfkB family carbohydrate kinase NDN13_05650 PF01654 Cytochrome bd terminal oxidase subunit I NDN13_05655 PF02322 Cytochrome bd terminal oxidase subunit II NDN13_05660 PF08173 Membrane bound YbgT-like protein NDN13_05670 PF00593 TonB dependent receptor NDN13_05670 PF07715 TonB-dependent Receptor Plug Domain NDN13_05670 PF07660 Secretin and TonB N terminus short domain NDN13_05705 PF00043 Glutathione S-transferase, C-terminal domain NDN13_05705 PF02798 Glutathione S-transferase, N-terminal domain NDN13_05715 PF02525 Flavodoxin-like fold NDN13_05720 PF03466 LysR substrate binding domain NDN13_05720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_05725 PF01965 DJ-1/PfpI family NDN13_05775 PF00448 SRP54-type protein, GTPase domain NDN13_05775 PF02881 SRP54-type protein, helical bundle domain NDN13_05800 PF01380 SIS domain NDN13_05800 PF00571 CBS domain NDN13_05805 PF00202 Aminotransferase class-III NDN13_05810 PF00462 Glutaredoxin NDN13_05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_05825 PF03466 LysR substrate binding domain NDN13_05830 PF00557 Metallopeptidase family M24 NDN13_05835 PF05525 Branched-chain amino acid transport protein NDN13_05855 PF01047 MarR family NDN13_05870 PF01274 Malate synthase NDN13_05875 PF03969 AFG1-like ATPase NDN13_05885 PF00743 Flavin-binding monooxygenase-like NDN13_05890 PF07690 Major Facilitator Superfamily NDN13_05895 PF00440 Bacterial regulatory proteins, tetR family NDN13_05900 PF03956 Lysine exporter LysO NDN13_05905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDN13_05930 PF00216 Bacterial DNA-binding protein NDN13_05935 PF00575 S1 RNA binding domain NDN13_05940 PF02224 Cytidylate kinase NDN13_05950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN13_05960 PF03167 Uracil DNA glycosylase superfamily NDN13_05970 PF03934 Type II secretion system (T2SS), protein K NDN13_05975 PF07963 Prokaryotic N-terminal methylation motif NDN13_05975 PF11612 Type II secretion system (T2SS), protein J NDN13_05995 PF01026 TatD related DNase NDN13_06020 PF09115 DNA polymerase III, delta subunit, C terminal NDN13_06025 PF02348 Cytidylyltransferase NDN13_06030 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDN13_06035 PF00005 ABC transporter NDN13_06035 PF00664 ABC transporter transmembrane region NDN13_06045 PF01618 MotA/TolQ/ExbB proton channel family NDN13_06050 PF02195 ParB-like nuclease domain NDN13_06050 PF17762 HTH domain found in ParB protein NDN13_06055 PF13614 AAA domain NDN13_06060 PF02527 rRNA small subunit methyltransferase G NDN13_06065 PF00483 Nucleotidyl transferase NDN13_06070 PF01636 Phosphotransferase enzyme family NDN13_06075 PF03968 OstA-like protein NDN13_06075 PF04453 LPS transport system D NDN13_06080 PF00639 PPIC-type PPIASE domain NDN13_06080 PF09312 SurA N-terminal domain NDN13_06085 PF01116 Fructose-bisphosphate aldolase class-II NDN13_06090 PF00271 Helicase conserved C-terminal domain NDN13_06090 PF00270 DEAD/DEAH box helicase NDN13_06095 PF00313 'Cold-shock' DNA-binding domain NDN13_06105 PF04542 Sigma-70 region 2 NDN13_06105 PF00140 Sigma-70 factor, region 1.2 NDN13_06105 PF04545 Sigma-70, region 4 NDN13_06110 PF04241 Protein of unknown function (DUF423) NDN13_06120 PF05690 Thiazole biosynthesis protein ThiG NDN13_06140 PF03883 Peroxide stress protein YaaA NDN13_06155 PF06956 Regulator of RNA terminal phosphate cyclase NDN13_06155 PF00158 Sigma-54 interaction domain NDN13_06165 PF00753 Metallo-beta-lactamase superfamily NDN13_06170 PF01139 tRNA-splicing ligase RtcB NDN13_06185 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NDN13_06185 PF01137 RNA 3'-terminal phosphate cyclase NDN13_06190 PF07687 Peptidase dimerisation domain NDN13_06190 PF01546 Peptidase family M20/M25/M40 NDN13_06200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN13_06205 PF01842 ACT domain NDN13_06205 PF01817 Chorismate mutase type II NDN13_06205 PF00800 Prephenate dehydratase NDN13_06220 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_06220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_06220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_06225 PF02885 Glycosyl transferase family, helical bundle domain NDN13_06225 PF00591 Glycosyl transferase family, a/b domain NDN13_06240 PF07023 Protein of unknown function (DUF1315) NDN13_06245 PF01513 ATP-NAD kinase NDN13_06250 PF14814 Bifunctional transglycosylase second domain NDN13_06250 PF00912 Transglycosylase NDN13_06250 PF00905 Penicillin binding protein transpeptidase domain NDN13_06260 PF00293 NUDIX domain NDN13_06270 PF00512 His Kinase A (phospho-acceptor) domain NDN13_06270 PF08521 Two-component sensor kinase N-terminal NDN13_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_06275 PF00072 Response regulator receiver domain NDN13_06275 PF00486 Transcriptional regulatory protein, C terminal NDN13_06285 PF00437 Type II/IV secretion system protein NDN13_06285 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN13_06290 PF18389 TrmO C-terminal domain NDN13_06290 PF01980 tRNA-methyltransferase O NDN13_06295 PF00175 Oxidoreductase NAD-binding domain NDN13_06295 PF00970 Oxidoreductase FAD-binding domain NDN13_06300 PF00440 Bacterial regulatory proteins, tetR family NDN13_06300 PF16295 Tetracyclin repressor-like, C-terminal domain NDN13_06310 PF04284 Protein of unknown function (DUF441) NDN13_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_06315 PF03466 LysR substrate binding domain NDN13_06320 PF02677 Epoxyqueuosine reductase QueH NDN13_06330 PF07690 Major Facilitator Superfamily NDN13_06335 PF09997 Predicted membrane protein (DUF2238) NDN13_06340 PF01497 Periplasmic binding protein NDN13_06345 PF00005 ABC transporter NDN13_06350 PF01032 FecCD transport family NDN13_06355 PF01032 FecCD transport family NDN13_06360 PF00027 Cyclic nucleotide-binding domain NDN13_06360 PF00520 Ion transport protein NDN13_06365 PF00939 Sodium:sulfate symporter transmembrane region NDN13_06375 PF03781 Sulfatase-modifying factor enzyme 1 NDN13_06380 PF00330 Aconitase family (aconitate hydratase) NDN13_06380 PF06434 Aconitate hydratase 2 N-terminus NDN13_06380 PF11791 Aconitate B N-terminal domain NDN13_06410 PF01103 Surface antigen NDN13_06410 PF07244 Surface antigen variable number repeat NDN13_06410 PF17243 POTRA domain TamA domain 1 NDN13_06415 PF07690 Major Facilitator Superfamily NDN13_06420 PF03232 Ubiquinone biosynthesis protein COQ7 NDN13_06440 PF02152 Dihydroneopterin aldolase NDN13_06445 PF03109 ABC1 family NDN13_06450 PF00899 ThiF family NDN13_06455 PF03280 Proteobacterial lipase chaperone protein NDN13_06460 PF00561 alpha/beta hydrolase fold NDN13_06465 PF12833 Helix-turn-helix domain NDN13_06465 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_06470 PF01613 Flavin reductase like domain NDN13_06480 PF00106 short chain dehydrogenase NDN13_06485 PF02311 AraC-like ligand binding domain NDN13_06485 PF12833 Helix-turn-helix domain NDN13_06500 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_06505 PF13847 Methyltransferase domain NDN13_06505 PF17827 PrmC N-terminal domain NDN13_06510 PF03462 PCRF domain NDN13_06510 PF00472 RF-1 domain NDN13_06515 PF05360 yiaA/B two helix domain NDN13_06525 PF01136 Peptidase family U32 NDN13_06525 PF16325 Peptidase family U32 C-terminal domain NDN13_06530 PF00037 4Fe-4S binding domain NDN13_06540 PF00005 ABC transporter NDN13_06555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN13_06560 PF08753 NikR C terminal nickel binding domain NDN13_06560 PF01402 Ribbon-helix-helix protein, copG family NDN13_06565 PF00289 Biotin carboxylase, N-terminal domain NDN13_06565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_06565 PF02785 Biotin carboxylase C-terminal domain NDN13_06585 PF00464 Serine hydroxymethyltransferase NDN13_06610 PF00005 ABC transporter NDN13_06615 PF01061 ABC-2 type transporter NDN13_06620 PF14489 QueF-like protein NDN13_06620 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDN13_06630 PF01098 Cell cycle protein NDN13_06635 PF13406 Transglycosylase SLT domain NDN13_06640 PF03330 Lytic transglycolase NDN13_06640 PF05036 Sporulation related domain NDN13_06655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN13_06655 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_06660 PF04055 Radical SAM superfamily NDN13_06670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDN13_06670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDN13_06675 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NDN13_06675 PF00271 Helicase conserved C-terminal domain NDN13_06675 PF00270 DEAD/DEAH box helicase NDN13_06675 PF11898 Domain of unknown function (DUF3418) NDN13_06675 PF04408 Helicase associated domain (HA2) NDN13_06685 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN13_06685 PF00578 AhpC/TSA family NDN13_06695 PF00487 Fatty acid desaturase NDN13_06705 PF01596 O-methyltransferase NDN13_06715 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_06715 PF13192 Thioredoxin domain NDN13_06725 PF00043 Glutathione S-transferase, C-terminal domain NDN13_06725 PF02798 Glutathione S-transferase, N-terminal domain NDN13_06735 PF02390 Putative methyltransferase NDN13_06770 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_06770 PF04717 Type VI secretion system, phage-baseplate injector NDN13_06770 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_06770 PF04717 Type VI secretion system, phage-baseplate injector NDN13_06770 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_06770 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_06785 PF13488 Glycine zipper NDN13_06785 PF00691 OmpA family NDN13_06795 PF01979 Amidohydrolase family NDN13_06800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN13_06800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN13_06810 PF01170 Putative RNA methylase family UPF0020 NDN13_06810 PF02926 THUMP domain NDN13_06810 PF10672 S-adenosylmethionine-dependent methyltransferase NDN13_06820 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_06820 PF07724 AAA domain (Cdc48 subfamily) NDN13_06820 PF17871 AAA lid domain NDN13_06820 PF02861 Clp amino terminal domain, pathogenicity island component NDN13_06820 PF10431 C-terminal, D2-small domain, of ClpB protein NDN13_06830 PF02566 OsmC-like protein NDN13_06835 PF13545 Crp-like helix-turn-helix domain NDN13_06835 PF00027 Cyclic nucleotide-binding domain NDN13_06840 PF01435 Peptidase family M48 NDN13_06845 PF04072 Leucine carboxyl methyltransferase NDN13_06850 PF00743 Flavin-binding monooxygenase-like NDN13_06855 PF00106 short chain dehydrogenase NDN13_06870 PF17932 Tetracyclin repressor-like, C-terminal domain NDN13_06870 PF00440 Bacterial regulatory proteins, tetR family NDN13_06880 PF00005 ABC transporter NDN13_06885 PF03459 TOBE domain NDN13_06890 PF00158 Sigma-54 interaction domain NDN13_06900 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_06905 PF00005 ABC transporter NDN13_06920 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_06930 PF16868 NMT1-like family NDN13_06940 PF00248 Aldo/keto reductase family NDN13_06945 PF00296 Luciferase-like monooxygenase NDN13_06950 PF00672 HAMP domain NDN13_06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_06950 PF00512 His Kinase A (phospho-acceptor) domain NDN13_06960 PF00486 Transcriptional regulatory protein, C terminal NDN13_06960 PF00072 Response regulator receiver domain NDN13_06965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_06965 PF00529 HlyD membrane-fusion protein of T1SS NDN13_06970 PF00873 AcrB/AcrD/AcrF family NDN13_06975 PF02321 Outer membrane efflux protein NDN13_06985 PF04261 Dyp-type peroxidase family NDN13_06990 PF02634 FdhD/NarQ family NDN13_06995 PF00384 Molybdopterin oxidoreductase NDN13_07015 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_07015 PF12833 Helix-turn-helix domain NDN13_07030 PF01654 Cytochrome bd terminal oxidase subunit I NDN13_07035 PF02322 Cytochrome bd terminal oxidase subunit II NDN13_07040 PF00392 Bacterial regulatory proteins, gntR family NDN13_07040 PF00155 Aminotransferase class I and II NDN13_07045 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_07045 PF12833 Helix-turn-helix domain NDN13_07060 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN13_07060 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN13_07065 PF00491 Arginase family NDN13_07070 PF01979 Amidohydrolase family NDN13_07075 PF00324 Amino acid permease NDN13_07080 PF00221 Aromatic amino acid lyase NDN13_07085 PF17391 Urocanase N-terminal domain NDN13_07085 PF01175 Urocanase Rossmann-like domain NDN13_07085 PF17392 Urocanase C-terminal domain NDN13_07090 PF05962 HutD NDN13_07095 PF00392 Bacterial regulatory proteins, gntR family NDN13_07095 PF07702 UTRA domain NDN13_07100 PF00355 Rieske [2Fe-2S] domain NDN13_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_07105 PF03466 LysR substrate binding domain NDN13_07115 PF01979 Amidohydrolase family NDN13_07120 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_07125 PF00005 ABC transporter NDN13_07130 PF09084 NMT1/THI5 like NDN13_07185 PF04115 Ureidoglycolate lyase NDN13_07190 PF03561 Allantoicase repeat NDN13_07195 PF00392 Bacterial regulatory proteins, gntR family NDN13_07195 PF07729 FCD domain NDN13_07200 PF01494 FAD binding domain NDN13_07215 PF01979 Amidohydrolase family NDN13_07225 PF00860 Permease family NDN13_07230 PF00576 HIUase/Transthyretin family NDN13_07245 PF13360 PQQ-like domain NDN13_07245 PF01011 PQQ enzyme repeat NDN13_07250 PF04966 Carbohydrate-selective porin, OprB family NDN13_07255 PF05048 Periplasmic copper-binding protein (NosD) NDN13_07260 PF01487 Type I 3-dehydroquinase NDN13_07265 PF00775 Dioxygenase NDN13_07270 PF00775 Dioxygenase NDN13_07270 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDN13_07275 PF02627 Carboxymuconolactone decarboxylase family NDN13_07280 PF07690 Major Facilitator Superfamily NDN13_07285 PF00561 alpha/beta hydrolase fold NDN13_07290 PF10397 Adenylosuccinate lyase C-terminus NDN13_07290 PF00206 Lyase NDN13_07295 PF02803 Thiolase, C-terminal domain NDN13_07295 PF00108 Thiolase, N-terminal domain NDN13_07300 PF01144 Coenzyme A transferase NDN13_07305 PF01144 Coenzyme A transferase NDN13_07310 PF09339 IclR helix-turn-helix domain NDN13_07310 PF01614 Bacterial transcriptional regulator NDN13_07315 PF06826 Predicted Permease Membrane Region NDN13_07315 PF02080 TrkA-C domain NDN13_07320 PF00155 Aminotransferase class I and II NDN13_07325 PF00175 Oxidoreductase NAD-binding domain NDN13_07325 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_07325 PF00970 Oxidoreductase FAD-binding domain NDN13_07330 PF00171 Aldehyde dehydrogenase family NDN13_07335 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN13_07335 PF00355 Rieske [2Fe-2S] domain NDN13_07340 PF07859 alpha/beta hydrolase fold NDN13_07345 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_07350 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN13_07355 PF03466 LysR substrate binding domain NDN13_07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_07405 PF03527 RHS protein NDN13_07405 PF05593 RHS Repeat NDN13_07410 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_07410 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_07410 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_07410 PF04717 Type VI secretion system, phage-baseplate injector NDN13_07410 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_07410 PF04717 Type VI secretion system, phage-baseplate injector NDN13_07420 PF05970 PIF1-like helicase NDN13_07420 PF14493 Helix-turn-helix domain NDN13_07435 PF00171 Aldehyde dehydrogenase family NDN13_07440 PF13520 Amino acid permease NDN13_07445 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NDN13_07450 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NDN13_07455 PF02540 NAD synthase NDN13_07455 PF00117 Glutamine amidotransferase class-I NDN13_07455 PF00958 GMP synthase C terminal domain NDN13_07470 PF12697 Alpha/beta hydrolase family NDN13_07475 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN13_07475 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDN13_07480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN13_07485 PF00149 Calcineurin-like phosphoesterase NDN13_07500 PF00881 Nitroreductase family NDN13_07510 PF17209 Hfq protein NDN13_07520 PF01119 DNA mismatch repair protein, C-terminal domain NDN13_07520 PF08676 MutL C terminal dimerisation domain NDN13_07525 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NDN13_07535 PF01479 S4 domain NDN13_07535 PF00849 RNA pseudouridylate synthase NDN13_07550 PF01479 S4 domain NDN13_07550 PF00849 RNA pseudouridylate synthase NDN13_07560 PF00296 Luciferase-like monooxygenase NDN13_07565 PF00563 EAL domain NDN13_07565 PF00990 Diguanylate cyclase, GGDEF domain NDN13_07565 PF03707 Bacterial signalling protein N terminal repeat NDN13_07570 PF03618 Kinase/pyrophosphorylase NDN13_07575 PF00391 PEP-utilising enzyme, mobile domain NDN13_07575 PF02896 PEP-utilising enzyme, TIM barrel domain NDN13_07575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NDN13_07585 PF06481 COX Aromatic Rich Motif NDN13_07585 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDN13_07590 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDN13_07595 PF00510 Cytochrome c oxidase subunit III NDN13_07600 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDN13_07605 PF01040 UbiA prenyltransferase family NDN13_07615 PF01250 Ribosomal protein S6 NDN13_07620 PF01084 Ribosomal protein S18 NDN13_07625 PF03948 Ribosomal protein L9, C-terminal domain NDN13_07625 PF01281 Ribosomal protein L9, N-terminal domain NDN13_07630 PF02525 Flavodoxin-like fold NDN13_07635 PF01638 HxlR-like helix-turn-helix NDN13_07640 PF03796 DnaB-like helicase C terminal domain NDN13_07640 PF00772 DnaB-like helicase N terminal domain NDN13_07645 PF01168 Alanine racemase, N-terminal domain NDN13_07645 PF00842 Alanine racemase, C-terminal domain NDN13_07660 PF08379 Bacterial transglutaminase-like N-terminal region NDN13_07660 PF01841 Transglutaminase-like superfamily NDN13_07670 PF14403 Circularly permuted ATP-grasp type 2 NDN13_07685 PF00709 Adenylosuccinate synthetase NDN13_07690 PF13393 Histidyl-tRNA synthetase NDN13_07705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN13_07705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN13_07710 PF02272 DHHA1 domain NDN13_07710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN13_07710 PF01411 tRNA synthetases class II (A) NDN13_07715 PF13840 ACT domain NDN13_07715 PF01842 ACT domain NDN13_07715 PF00696 Amino acid kinase family NDN13_07720 PF02599 Global regulator protein family NDN13_07725 PF01351 Ribonuclease HII NDN13_07735 PF01292 Prokaryotic cytochrome b561 NDN13_07740 PF00962 Adenosine/AMP deaminase NDN13_07745 PF00860 Permease family NDN13_07755 PF07715 TonB-dependent Receptor Plug Domain NDN13_07755 PF00593 TonB dependent receptor NDN13_07770 PF00667 FAD binding domain NDN13_07770 PF00258 Flavodoxin NDN13_07770 PF00175 Oxidoreductase NAD-binding domain NDN13_07780 PF02424 ApbE family NDN13_07790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_07790 PF12833 Helix-turn-helix domain NDN13_07800 PF00893 Small Multidrug Resistance protein NDN13_07805 PF13932 GidA associated domain NDN13_07805 PF01134 Glucose inhibited division protein A NDN13_07825 PF02954 Bacterial regulatory protein, Fis family NDN13_07830 PF02142 MGS-like domain NDN13_07830 PF01808 AICARFT/IMPCHase bienzyme NDN13_07835 PF02844 Phosphoribosylglycinamide synthetase, N domain NDN13_07835 PF02843 Phosphoribosylglycinamide synthetase, C domain NDN13_07835 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDN13_07840 PF03180 NLPA lipoprotein NDN13_07845 PF09383 NIL domain NDN13_07845 PF00005 ABC transporter NDN13_07850 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_07855 PF01810 LysE type translocator NDN13_07870 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN13_07870 PF00753 Metallo-beta-lactamase superfamily NDN13_07880 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NDN13_07880 PF05221 S-adenosyl-L-homocysteine hydrolase NDN13_07885 PF02219 Methylenetetrahydrofolate reductase NDN13_07890 PF04452 RNA methyltransferase NDN13_07895 PF00990 Diguanylate cyclase, GGDEF domain NDN13_07895 PF03707 Bacterial signalling protein N terminal repeat NDN13_07895 PF00563 EAL domain NDN13_07900 PF01515 Phosphate acetyl/butaryl transferase NDN13_07900 PF00390 Malic enzyme, N-terminal domain NDN13_07900 PF03949 Malic enzyme, NAD binding domain NDN13_07905 PF01743 Poly A polymerase head domain NDN13_07905 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN13_07920 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NDN13_07925 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDN13_07930 PF02565 Recombination protein O C terminal NDN13_07930 PF11967 Recombination protein O N terminal NDN13_07940 PF01926 50S ribosome-binding GTPase NDN13_07940 PF07650 KH domain NDN13_07945 PF14622 Ribonuclease-III-like NDN13_07945 PF00035 Double-stranded RNA binding motif NDN13_07955 PF10502 Signal peptidase, peptidase S26 NDN13_07960 PF06421 GTP-binding protein LepA C-terminus NDN13_07960 PF00679 Elongation factor G C-terminus NDN13_07960 PF00009 Elongation factor Tu GTP binding domain NDN13_07960 PF03144 Elongation factor Tu domain 2 NDN13_07975 PF13180 PDZ domain NDN13_07980 PF00890 FAD binding domain NDN13_07980 PF02910 Fumarate reductase flavoprotein C-term NDN13_08000 PF02223 Thymidylate kinase NDN13_08005 PF02618 YceG-like family NDN13_08010 PF01063 Amino-transferase class IV NDN13_08025 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_08030 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_08035 PF12857 TOBE-like domain NDN13_08035 PF00005 ABC transporter NDN13_08040 PF03466 LysR substrate binding domain NDN13_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_08050 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_08050 PF14602 Hexapeptide repeat of succinyl-transferase NDN13_08050 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDN13_08055 PF04055 Radical SAM superfamily NDN13_08060 PF06508 Queuosine biosynthesis protein QueC NDN13_08075 PF00578 AhpC/TSA family NDN13_08095 PF01361 Tautomerase enzyme NDN13_08100 PF00043 Glutathione S-transferase, C-terminal domain NDN13_08100 PF02798 Glutathione S-transferase, N-terminal domain NDN13_08105 PF03466 LysR substrate binding domain NDN13_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_08110 PF00293 NUDIX domain NDN13_08110 PF01467 Cytidylyltransferase-like NDN13_08115 PF00378 Enoyl-CoA hydratase/isomerase NDN13_08120 PF02595 Glycerate kinase family NDN13_08125 PF01784 NIF3 (NGG1p interacting factor 3) NDN13_08160 PF07690 Major Facilitator Superfamily NDN13_08165 PF02769 AIR synthase related protein, C-terminal domain NDN13_08165 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDN13_08165 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDN13_08175 PF01966 HD domain NDN13_08185 PF01330 RuvA N terminal domain NDN13_08185 PF07499 RuvA, C-terminal domain NDN13_08190 PF17864 RuvB AAA lid domain NDN13_08190 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDN13_08190 PF05491 RuvB C-terminal winged helix domain NDN13_08200 PF03061 Thioesterase superfamily NDN13_08205 PF01618 MotA/TolQ/ExbB proton channel family NDN13_08210 PF02472 Biopolymer transport protein ExbD/TolR NDN13_08220 PF07676 WD40-like Beta Propeller Repeat NDN13_08220 PF04052 TolB amino-terminal domain NDN13_08225 PF00691 OmpA family NDN13_08235 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDN13_08240 PF00588 SpoU rRNA Methylase family NDN13_08240 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN13_08270 PF00308 Bacterial dnaA protein NDN13_08270 PF08299 Bacterial dnaA protein helix-turn-helix NDN13_08270 PF11638 DnaA N-terminal domain NDN13_08275 PF01594 AI-2E family transporter NDN13_08280 PF00586 AIR synthase related protein, N-terminal domain NDN13_08280 PF02769 AIR synthase related protein, C-terminal domain NDN13_08285 PF00551 Formyl transferase NDN13_08295 PF06965 Na+/H+ antiporter 1 NDN13_08295 PF01343 Peptidase family S49 NDN13_08305 PF03772 Competence protein NDN13_08305 PF13567 Domain of unknown function (DUF4131) NDN13_08305 PF00753 Metallo-beta-lactamase superfamily NDN13_08310 PF12704 MacB-like periplasmic core domain NDN13_08310 PF02687 FtsX-like permease family NDN13_08315 PF00005 ABC transporter NDN13_08320 PF02687 FtsX-like permease family NDN13_08320 PF12704 MacB-like periplasmic core domain NDN13_08335 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDN13_08350 PF00266 Aminotransferase class-V NDN13_08375 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN13_08375 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN13_08385 PF01012 Electron transfer flavoprotein domain NDN13_08385 PF00766 Electron transfer flavoprotein FAD-binding domain NDN13_08390 PF01012 Electron transfer flavoprotein domain NDN13_08395 PF00589 Phage integrase family NDN13_08395 PF02899 Phage integrase, N-terminal SAM-like domain NDN13_08400 PF01810 LysE type translocator NDN13_08405 PF00561 alpha/beta hydrolase fold NDN13_08415 PF01678 Diaminopimelate epimerase NDN13_08420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDN13_08420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDN13_08430 PF00324 Amino acid permease NDN13_08435 PF01235 Sodium:alanine symporter family NDN13_08440 PF18073 Rubredoxin metal binding domain NDN13_08455 PF01384 Phosphate transporter family NDN13_08460 PF02310 B12 binding domain NDN13_08460 PF02607 B12 binding domain NDN13_08460 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDN13_08460 PF00809 Pterin binding enzyme NDN13_08460 PF02574 Homocysteine S-methyltransferase NDN13_08475 PF04960 Glutaminase NDN13_08480 PF01327 Polypeptide deformylase NDN13_08500 PF00582 Universal stress protein family NDN13_08525 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NDN13_08525 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NDN13_08530 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_08530 PF12833 Helix-turn-helix domain NDN13_08535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN13_08540 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_08545 PF00005 ABC transporter NDN13_08550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NDN13_08560 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_08570 PF00266 Aminotransferase class-V NDN13_08575 PF01810 LysE type translocator NDN13_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_08580 PF03466 LysR substrate binding domain NDN13_08585 PF00392 Bacterial regulatory proteins, gntR family NDN13_08585 PF07702 UTRA domain NDN13_08590 PF02910 Fumarate reductase flavoprotein C-term NDN13_08590 PF00890 FAD binding domain NDN13_08605 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_08610 PF00005 ABC transporter NDN13_08625 PF09828 Chromate resistance exported protein NDN13_08635 PF01545 Cation efflux family NDN13_08635 PF16916 Dimerisation domain of Zinc Transporter NDN13_08645 PF00005 ABC transporter NDN13_08645 PF03459 TOBE domain NDN13_08650 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_08665 PF07715 TonB-dependent Receptor Plug Domain NDN13_08665 PF00593 TonB dependent receptor NDN13_08685 PF04972 BON domain NDN13_08685 PF00691 OmpA family NDN13_08695 PF06761 Intracellular multiplication and human macrophage-killing NDN13_08695 PF14331 ImcF-related N-terminal domain NDN13_08695 PF06744 Type VI secretion protein IcmF C-terminal NDN13_08710 PF05947 Type VI secretion system, TssF NDN13_08725 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NDN13_08730 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NDN13_08740 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_08740 PF07724 AAA domain (Cdc48 subfamily) NDN13_08740 PF17871 AAA lid domain NDN13_08740 PF10431 C-terminal, D2-small domain, of ClpB protein NDN13_08750 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NDN13_08770 PF01569 PAP2 superfamily NDN13_08775 PF00501 AMP-binding enzyme NDN13_08775 PF13193 AMP-binding enzyme C-terminal domain NDN13_08775 PF00668 Condensation domain NDN13_08775 PF00550 Phosphopantetheine attachment site NDN13_08775 PF00975 Thioesterase domain NDN13_08785 PF02470 MlaD protein NDN13_08790 PF04403 Paraquat-inducible protein A NDN13_08800 PF00324 Amino acid permease NDN13_08805 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NDN13_08810 PF04996 Succinylarginine dihydrolase NDN13_08815 PF00171 Aldehyde dehydrogenase family NDN13_08820 PF04958 Arginine N-succinyltransferase beta subunit NDN13_08825 PF00202 Aminotransferase class-III NDN13_08830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN13_08830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN13_08840 PF03949 Malic enzyme, NAD binding domain NDN13_08840 PF00390 Malic enzyme, N-terminal domain NDN13_08850 PF00106 short chain dehydrogenase NDN13_08860 PF07715 TonB-dependent Receptor Plug Domain NDN13_08885 PF09317 Domain of unknown function (DUF1974) NDN13_08885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_08885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_08890 PF02321 Outer membrane efflux protein NDN13_08895 PF00873 AcrB/AcrD/AcrF family NDN13_08900 PF00873 AcrB/AcrD/AcrF family NDN13_08905 PF13533 Biotin-lipoyl like NDN13_08910 PF08281 Sigma-70, region 4 NDN13_08910 PF04542 Sigma-70 region 2 NDN13_08920 PF07715 TonB-dependent Receptor Plug Domain NDN13_08920 PF07660 Secretin and TonB N terminus short domain NDN13_08920 PF00593 TonB dependent receptor NDN13_08940 PF07715 TonB-dependent Receptor Plug Domain NDN13_08940 PF00593 TonB dependent receptor NDN13_08945 PF03573 outer membrane porin, OprD family NDN13_08950 PF03466 LysR substrate binding domain NDN13_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_08955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDN13_08955 PF13378 Enolase C-terminal domain-like NDN13_08960 PF02426 Muconolactone delta-isomerase NDN13_08965 PF04444 Catechol dioxygenase N terminus NDN13_08965 PF00775 Dioxygenase NDN13_08970 PF01144 Coenzyme A transferase NDN13_08975 PF01144 Coenzyme A transferase NDN13_08980 PF00108 Thiolase, N-terminal domain NDN13_08980 PF02803 Thiolase, C-terminal domain NDN13_08985 PF12146 Serine aminopeptidase, S33 NDN13_08990 PF01804 Penicillin amidase NDN13_08995 PF00171 Aldehyde dehydrogenase family NDN13_09005 PF02728 Copper amine oxidase, N3 domain NDN13_09005 PF07833 Copper amine oxidase N-terminal domain NDN13_09005 PF01179 Copper amine oxidase, enzyme domain NDN13_09005 PF02727 Copper amine oxidase, N2 domain NDN13_09010 PF02311 AraC-like ligand binding domain NDN13_09010 PF12833 Helix-turn-helix domain NDN13_09015 PF01613 Flavin reductase like domain NDN13_09020 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_09020 PF00175 Oxidoreductase NAD-binding domain NDN13_09035 PF00355 Rieske [2Fe-2S] domain NDN13_09035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN13_09045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN13_09050 PF01425 Amidase NDN13_09060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN13_09060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN13_09065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN13_09065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN13_09070 PF12833 Helix-turn-helix domain NDN13_09075 PF07690 Major Facilitator Superfamily NDN13_09090 PF07995 Glucose / Sorbosone dehydrogenase NDN13_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_09100 PF03466 LysR substrate binding domain NDN13_09105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_09110 PF00873 AcrB/AcrD/AcrF family NDN13_09115 PF02321 Outer membrane efflux protein NDN13_09175 PF03527 RHS protein NDN13_09175 PF05593 RHS Repeat NDN13_09180 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_09180 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_09180 PF04717 Type VI secretion system, phage-baseplate injector NDN13_09185 PF07715 TonB-dependent Receptor Plug Domain NDN13_09185 PF07660 Secretin and TonB N terminus short domain NDN13_09185 PF00593 TonB dependent receptor NDN13_09190 PF00376 MerR family regulatory protein NDN13_09190 PF09278 MerR, DNA binding NDN13_09200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_09205 PF00873 AcrB/AcrD/AcrF family NDN13_09210 PF02321 Outer membrane efflux protein NDN13_09215 PF07859 alpha/beta hydrolase fold NDN13_09220 PF00743 Flavin-binding monooxygenase-like NDN13_09225 PF00106 short chain dehydrogenase NDN13_09230 PF00440 Bacterial regulatory proteins, tetR family NDN13_09240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_09240 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_09245 PF06314 Acetoacetate decarboxylase (ADC) NDN13_09250 PF00106 short chain dehydrogenase NDN13_09255 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN13_09255 PF12833 Helix-turn-helix domain NDN13_09260 PF00701 Dihydrodipicolinate synthetase family NDN13_09265 PF00596 Class II Aldolase and Adducin N-terminal domain NDN13_09270 PF00392 Bacterial regulatory proteins, gntR family NDN13_09270 PF00155 Aminotransferase class I and II NDN13_09285 PF13417 Glutathione S-transferase, N-terminal domain NDN13_09295 PF01638 HxlR-like helix-turn-helix NDN13_09300 PF00221 Aromatic amino acid lyase NDN13_09305 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_09320 PF02416 mttA/Hcf106 family NDN13_09325 PF02416 mttA/Hcf106 family NDN13_09330 PF00902 Sec-independent protein translocase protein (TatC) NDN13_09345 PF00106 short chain dehydrogenase NDN13_09350 PF07836 DmpG-like communication domain NDN13_09350 PF00682 HMGL-like NDN13_09355 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NDN13_09355 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN13_09360 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN13_09365 PF01494 FAD binding domain NDN13_09370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN13_09375 PF00561 alpha/beta hydrolase fold NDN13_09380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NDN13_09395 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN13_09415 PF03737 Aldolase/RraA NDN13_09415 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN13_09420 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN13_09420 PF03737 Aldolase/RraA NDN13_09430 PF07836 DmpG-like communication domain NDN13_09430 PF00682 HMGL-like NDN13_09435 PF07690 Major Facilitator Superfamily NDN13_09440 PF12146 Serine aminopeptidase, S33 NDN13_09455 PF00589 Phage integrase family NDN13_09455 PF13356 Arm DNA-binding domain NDN13_09465 PF07690 Major Facilitator Superfamily NDN13_09470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_09470 PF00529 HlyD membrane-fusion protein of T1SS NDN13_09480 PF07690 Major Facilitator Superfamily NDN13_09485 PF00970 Oxidoreductase FAD-binding domain NDN13_09485 PF00175 Oxidoreductase NAD-binding domain NDN13_09485 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_09490 PF00866 Ring hydroxylating beta subunit NDN13_09495 PF00355 Rieske [2Fe-2S] domain NDN13_09495 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN13_09500 PF08241 Methyltransferase domain NDN13_09505 PF03061 Thioesterase superfamily NDN13_09510 PF00490 Delta-aminolevulinic acid dehydratase NDN13_09515 PF01266 FAD dependent oxidoreductase NDN13_09520 PF08338 Domain of unknown function (DUF1731) NDN13_09520 PF01370 NAD dependent epimerase/dehydratase family NDN13_09540 PF00378 Enoyl-CoA hydratase/isomerase NDN13_09545 PF00149 Calcineurin-like phosphoesterase NDN13_09545 PF12320 Type 5 capsule protein repressor C-terminal domain NDN13_09555 PF13419 Haloacid dehalogenase-like hydrolase NDN13_09570 PF01168 Alanine racemase, N-terminal domain NDN13_09575 PF00437 Type II/IV secretion system protein NDN13_09580 PF00437 Type II/IV secretion system protein NDN13_09585 PF01475 Ferric uptake regulator family NDN13_09590 PF04355 SmpA / OmlA family NDN13_09595 PF03658 RnfH family Ubiquitin NDN13_09605 PF01814 Hemerythrin HHE cation binding domain NDN13_09615 PF13230 Glutamine amidotransferases class-II NDN13_09625 PF00696 Amino acid kinase family NDN13_09630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN13_09630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN13_09630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN13_09630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN13_09635 PF00692 dUTPase NDN13_09640 PF00580 UvrD/REP helicase N-terminal domain NDN13_09640 PF13361 UvrD-like helicase C-terminal domain NDN13_09645 PF13488 Glycine zipper NDN13_09645 PF00691 OmpA family NDN13_09650 PF01553 Acyltransferase NDN13_09660 PF03775 Septum formation inhibitor MinC, C-terminal domain NDN13_09665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NDN13_09670 PF03776 Septum formation topological specificity factor MinE NDN13_09680 PF01580 FtsK/SpoIIIE family NDN13_09680 PF09397 Ftsk gamma domain NDN13_09680 PF17854 FtsK alpha domain NDN13_09680 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDN13_09685 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_09690 PF13847 Methyltransferase domain NDN13_09690 PF10119 Predicted methyltransferase regulatory domain NDN13_09695 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDN13_09700 PF04376 Arginine-tRNA-protein transferase, N terminus NDN13_09700 PF04377 Arginine-tRNA-protein transferase, C terminus NDN13_09705 PF00583 Acetyltransferase (GNAT) family NDN13_09720 PF00009 Elongation factor Tu GTP binding domain NDN13_09720 PF03144 Elongation factor Tu domain 2 NDN13_09720 PF03143 Elongation factor Tu C-terminal domain NDN13_09725 PF00679 Elongation factor G C-terminus NDN13_09725 PF14492 Elongation Factor G, domain II NDN13_09725 PF03764 Elongation factor G, domain IV NDN13_09725 PF00009 Elongation factor Tu GTP binding domain NDN13_09725 PF03144 Elongation factor Tu domain 2 NDN13_09730 PF00177 Ribosomal protein S7p/S5e NDN13_09735 PF00164 Ribosomal protein S12/S23 NDN13_09745 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN13_09745 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN13_09750 PF03653 Uncharacterised protein family (UPF0093) NDN13_09765 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_09765 PF04717 Type VI secretion system, phage-baseplate injector NDN13_09765 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_09775 PF00795 Carbon-nitrogen hydrolase NDN13_09775 PF02540 NAD synthase NDN13_09800 PF00037 4Fe-4S binding domain NDN13_09805 PF01467 Cytidylyltransferase-like NDN13_09810 PF01668 SmpB protein NDN13_09820 PF03358 NADPH-dependent FMN reductase NDN13_09825 PF02578 Multi-copper polyphenol oxidoreductase laccase NDN13_09830 PF00849 RNA pseudouridylate synthase NDN13_09830 PF01479 S4 domain NDN13_09835 PF13525 Outer membrane lipoprotein NDN13_09840 PF08278 DNA primase DnaG DnaB-binding NDN13_09840 PF01807 CHC2 zinc finger NDN13_09840 PF08275 DNA primase catalytic core, N-terminal domain NDN13_09840 PF10410 DnaB-helicase binding domain of primase NDN13_09845 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDN13_09845 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDN13_09845 PF01488 Shikimate / quinate 5-dehydrogenase NDN13_09855 PF03550 Outer membrane lipoprotein LolB NDN13_09860 PF08544 GHMP kinases C terminal NDN13_09860 PF00288 GHMP kinases N terminal domain NDN13_09885 PF14572 Phosphoribosyl synthetase-associated domain NDN13_09885 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN13_09890 PF01386 Ribosomal L25p family NDN13_09895 PF01195 Peptidyl-tRNA hydrolase NDN13_09900 PF02261 Aspartate decarboxylase NDN13_09905 PF01734 Patatin-like phospholipase NDN13_09905 PF00027 Cyclic nucleotide-binding domain NDN13_09920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN13_09925 PF13419 Haloacid dehalogenase-like hydrolase NDN13_09930 PF08543 Phosphomethylpyrimidine kinase NDN13_09930 PF03070 TENA/THI-4/PQQC family NDN13_09930 PF02581 Thiamine monophosphate synthase NDN13_09935 PF01476 LysM domain NDN13_09935 PF04972 BON domain NDN13_09940 PF00550 Phosphopantetheine attachment site NDN13_09950 PF00698 Acyl transferase domain NDN13_09955 PF01783 Ribosomal L32p protein family NDN13_09960 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDN13_09965 PF04315 Elongation factor P hydroxylase NDN13_09970 PF01300 Telomere recombination NDN13_09985 PF02616 Segregation and condensation protein ScpA NDN13_09990 PF04079 Segregation and condensation complex subunit ScpB NDN13_09995 PF00849 RNA pseudouridylate synthase NDN13_09995 PF01479 S4 domain NDN13_10000 PF00005 ABC transporter NDN13_10000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN13_10005 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_10005 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN13_10010 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_10015 PF01432 Peptidase family M3 NDN13_10025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN13_10030 PF07715 TonB-dependent Receptor Plug Domain NDN13_10030 PF00593 TonB dependent receptor NDN13_10040 PF01618 MotA/TolQ/ExbB proton channel family NDN13_10045 PF02472 Biopolymer transport protein ExbD/TolR NDN13_10050 PF02472 Biopolymer transport protein ExbD/TolR NDN13_10075 PF00155 Aminotransferase class I and II NDN13_10080 PF04055 Radical SAM superfamily NDN13_10080 PF06968 Biotin and Thiamin Synthesis associated domain NDN13_10080 PF00202 Aminotransferase class-III NDN13_10085 PF12697 Alpha/beta hydrolase family NDN13_10085 PF08241 Methyltransferase domain NDN13_10095 PF00578 AhpC/TSA family NDN13_10100 PF03466 LysR substrate binding domain NDN13_10100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_10105 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN13_10105 PF00355 Rieske [2Fe-2S] domain NDN13_10110 PF00866 Ring hydroxylating beta subunit NDN13_10115 PF00970 Oxidoreductase FAD-binding domain NDN13_10115 PF00175 Oxidoreductase NAD-binding domain NDN13_10115 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_10120 PF00106 short chain dehydrogenase NDN13_10125 PF03594 Benzoate membrane transport protein NDN13_10130 PF07690 Major Facilitator Superfamily NDN13_10140 PF00210 Ferritin-like domain NDN13_10150 PF12826 Helix-hairpin-helix motif NDN13_10150 PF01653 NAD-dependent DNA ligase adenylation domain NDN13_10150 PF03120 NAD-dependent DNA ligase OB-fold domain NDN13_10150 PF00533 BRCA1 C Terminus (BRCT) domain NDN13_10150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDN13_10160 PF06470 SMC proteins Flexible Hinge Domain NDN13_10160 PF02463 RecF/RecN/SMC N terminal domain NDN13_10180 PF01925 Sulfite exporter TauE/SafE NDN13_10190 PF03309 Type III pantothenate kinase NDN13_10200 PF00448 SRP54-type protein, GTPase domain NDN13_10200 PF02881 SRP54-type protein, helical bundle domain NDN13_10200 PF02978 Signal peptide binding domain NDN13_10210 PF01207 Dihydrouridine synthase (Dus) NDN13_10235 PF04820 Tryptophan halogenase NDN13_10270 PF00692 dUTPase NDN13_10285 PF01048 Phosphorylase superfamily NDN13_10290 PF10609 NUBPL iron-transfer P-loop NTPase NDN13_10305 PF13302 Acetyltransferase (GNAT) domain NDN13_10325 PF09334 tRNA synthetases class I (M) NDN13_10325 PF01588 Putative tRNA binding domain NDN13_10335 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN13_10335 PF00753 Metallo-beta-lactamase superfamily NDN13_10345 PF06100 MCRA family NDN13_10360 PF08241 Methyltransferase domain NDN13_10380 PF13533 Biotin-lipoyl like NDN13_10385 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_10405 PF05552 Conserved TM helix NDN13_10425 PF00970 Oxidoreductase FAD-binding domain NDN13_10425 PF00175 Oxidoreductase NAD-binding domain NDN13_10430 PF03466 LysR substrate binding domain NDN13_10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_10435 PF00593 TonB dependent receptor NDN13_10435 PF07715 TonB-dependent Receptor Plug Domain NDN13_10440 PF00313 'Cold-shock' DNA-binding domain NDN13_10455 PF00361 Proton-conducting membrane transporter NDN13_10460 PF00361 Proton-conducting membrane transporter NDN13_10465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN13_10465 PF00361 Proton-conducting membrane transporter NDN13_10470 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN13_10475 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDN13_10480 PF12838 4Fe-4S dicluster domain NDN13_10485 PF00146 NADH dehydrogenase NDN13_10490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN13_10490 PF00384 Molybdopterin oxidoreductase NDN13_10490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDN13_10495 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDN13_10495 PF10531 SLBB domain NDN13_10495 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDN13_10505 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDN13_10505 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDN13_10510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDN13_10515 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDN13_10520 PF00990 Diguanylate cyclase, GGDEF domain NDN13_10520 PF17158 Membrane-associated sensor, integral membrane domain NDN13_10530 PF00672 HAMP domain NDN13_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_10530 PF00512 His Kinase A (phospho-acceptor) domain NDN13_10535 PF00486 Transcriptional regulatory protein, C terminal NDN13_10535 PF00072 Response regulator receiver domain NDN13_10545 PF00317 Ribonucleotide reductase, all-alpha domain NDN13_10545 PF02867 Ribonucleotide reductase, barrel domain NDN13_10545 PF03477 ATP cone domain NDN13_10555 PF00268 Ribonucleotide reductase, small chain NDN13_10570 PF16295 Tetracyclin repressor-like, C-terminal domain NDN13_10570 PF00440 Bacterial regulatory proteins, tetR family NDN13_10575 PF01613 Flavin reductase like domain NDN13_10580 PF08267 Cobalamin-independent synthase, N-terminal domain NDN13_10580 PF01717 Cobalamin-independent synthase, Catalytic domain NDN13_10590 PF06039 Malate:quinone oxidoreductase (Mqo) NDN13_10605 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_10610 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_10615 PF00440 Bacterial regulatory proteins, tetR family NDN13_10615 PF13977 BetI-type transcriptional repressor, C-terminal NDN13_10620 PF00171 Aldehyde dehydrogenase family NDN13_10625 PF00732 GMC oxidoreductase NDN13_10625 PF05199 GMC oxidoreductase NDN13_10635 PF00107 Zinc-binding dehydrogenase NDN13_10635 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_10640 PF14572 Phosphoribosyl synthetase-associated domain NDN13_10640 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN13_10645 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN13_10655 PF05199 GMC oxidoreductase NDN13_10655 PF00732 GMC oxidoreductase NDN13_10660 PF08378 Nuclease-related domain NDN13_10705 PF02445 Quinolinate synthetase A protein NDN13_10710 PF01960 ArgJ family NDN13_10715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN13_10715 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN13_10720 PF00893 Small Multidrug Resistance protein NDN13_10735 PF05275 Copper resistance protein B precursor (CopB) NDN13_10740 PF07731 Multicopper oxidase NDN13_10740 PF00394 Multicopper oxidase NDN13_10740 PF07732 Multicopper oxidase NDN13_10750 PF00834 Ribulose-phosphate 3 epimerase family NDN13_10760 PF00691 OmpA family NDN13_10760 PF05736 OprF membrane domain NDN13_10765 PF00756 Putative esterase NDN13_10775 PF04445 Putative SAM-dependent methyltransferase NDN13_10780 PF02673 Bacitracin resistance protein BacA NDN13_10785 PF00814 Glycoprotease family NDN13_10795 PF00293 NUDIX domain NDN13_10835 PF00425 chorismate binding enzyme NDN13_10835 PF04715 Anthranilate synthase component I, N terminal region NDN13_10840 PF00155 Aminotransferase class I and II NDN13_10845 PF00815 Histidinol dehydrogenase NDN13_10855 PF01634 ATP phosphoribosyltransferase NDN13_10860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN13_10865 PF01722 BolA-like protein NDN13_10870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDN13_10875 PF04963 Sigma-54 factor, core binding domain NDN13_10875 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDN13_10875 PF04552 Sigma-54, DNA binding domain NDN13_10925 PF00795 Carbon-nitrogen hydrolase NDN13_10935 PF01047 MarR family NDN13_10940 PF02566 OsmC-like protein NDN13_10945 PF00437 Type II/IV secretion system protein NDN13_10965 PF00476 DNA polymerase family A NDN13_10965 PF01367 5'-3' exonuclease, C-terminal SAM fold NDN13_10965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDN13_10965 PF01612 3'-5' exonuclease NDN13_10970 PF01757 Acyltransferase family NDN13_10975 PF02325 YGGT family NDN13_10980 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN13_10980 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN13_10985 PF01171 PP-loop family NDN13_10985 PF09179 TilS substrate binding domain NDN13_10985 PF11734 TilS substrate C-terminal domain NDN13_10990 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDN13_10995 PF02541 Ppx/GppA phosphatase family NDN13_11000 PF00085 Thioredoxin NDN13_11005 PF07497 Rho termination factor, RNA-binding domain NDN13_11005 PF07498 Rho termination factor, N-terminal domain NDN13_11005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN13_11015 PF00216 Bacterial DNA-binding protein NDN13_11020 PF03484 tRNA synthetase B5 domain NDN13_11020 PF03483 B3/4 domain NDN13_11020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDN13_11020 PF01588 Putative tRNA binding domain NDN13_11020 PF03147 Ferredoxin-fold anticodon binding domain NDN13_11025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDN13_11025 PF01409 tRNA synthetases class II core domain (F) NDN13_11055 PF00453 Ribosomal protein L20 NDN13_11060 PF01632 Ribosomal protein L35 NDN13_11070 PF09335 SNARE associated Golgi protein NDN13_11085 PF00043 Glutathione S-transferase, C-terminal domain NDN13_11085 PF02798 Glutathione S-transferase, N-terminal domain NDN13_11095 PF00707 Translation initiation factor IF-3, C-terminal domain NDN13_11095 PF05198 Translation initiation factor IF-3, N-terminal domain NDN13_11100 PF03129 Anticodon binding domain NDN13_11100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN13_11100 PF02824 TGS domain NDN13_11100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN13_11105 PF00501 AMP-binding enzyme NDN13_11105 PF13193 AMP-binding enzyme C-terminal domain NDN13_11110 PF04751 Protein of unknown function (DUF615) NDN13_11115 PF00381 PTS HPr component phosphorylation site NDN13_11120 PF03668 P-loop ATPase protein family NDN13_11125 PF02569 Pantoate-beta-alanine ligase NDN13_11130 PF02548 Ketopantoate hydroxymethyltransferase NDN13_11135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDN13_11140 PF01743 Poly A polymerase head domain NDN13_11140 PF12626 Polymerase A arginine-rich C-terminus NDN13_11140 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN13_11150 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN13_11165 PF13291 ACT domain NDN13_11165 PF04607 Region found in RelA / SpoT proteins NDN13_11165 PF02824 TGS domain NDN13_11170 PF05958 tRNA (Uracil-5-)-methyltransferase NDN13_11180 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_11185 PF00672 HAMP domain NDN13_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_11185 PF00512 His Kinase A (phospho-acceptor) domain NDN13_11185 PF01627 Hpt domain NDN13_11185 PF00072 Response regulator receiver domain NDN13_11185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDN13_11190 PF00378 Enoyl-CoA hydratase/isomerase NDN13_11200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN13_11200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN13_11205 PF01261 Xylose isomerase-like TIM barrel NDN13_11215 PF00293 NUDIX domain NDN13_11220 PF00106 short chain dehydrogenase NDN13_11225 PF02233 NAD(P) transhydrogenase beta subunit NDN13_11230 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NDN13_11235 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NDN13_11235 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NDN13_11245 PF07690 Major Facilitator Superfamily NDN13_11250 PF01207 Dihydrouridine synthase (Dus) NDN13_11265 PF00899 ThiF family NDN13_11275 PF00330 Aconitase family (aconitate hydratase) NDN13_11275 PF00694 Aconitase C-terminal domain NDN13_11280 PF01026 TatD related DNase NDN13_11285 PF13739 Deacetylase PdaC NDN13_11285 PF01522 Polysaccharide deacetylase NDN13_11285 PF11738 Protein of unknown function (DUF3298) NDN13_11295 PF00009 Elongation factor Tu GTP binding domain NDN13_11295 PF03144 Elongation factor Tu domain 2 NDN13_11295 PF16658 Class II release factor RF3, C-terminal domain NDN13_11310 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_11315 PF09318 Glycosyl transferase 1 domain A NDN13_11315 PF00534 Glycosyl transferases group 1 NDN13_11360 PF03412 Peptidase C39 family NDN13_11360 PF00664 ABC transporter transmembrane region NDN13_11360 PF00005 ABC transporter NDN13_11365 PF02321 Outer membrane efflux protein NDN13_11380 PF03466 LysR substrate binding domain NDN13_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_11390 PF04355 SmpA / OmlA family NDN13_11390 PF00691 OmpA family NDN13_11395 PF05658 Head domain of trimeric autotransporter adhesin NDN13_11395 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_11395 PF13018 Extended Signal Peptide of Type V secretion system NDN13_11395 PF03895 YadA-like membrane anchor domain NDN13_11395 PF05658 Head domain of trimeric autotransporter adhesin NDN13_11395 PF03895 YadA-like membrane anchor domain NDN13_11395 PF13018 Extended Signal Peptide of Type V secretion system NDN13_11395 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_11400 PF00691 OmpA family NDN13_11400 PF04355 SmpA / OmlA family NDN13_11405 PF03895 YadA-like membrane anchor domain NDN13_11405 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_11405 PF13018 Extended Signal Peptide of Type V secretion system NDN13_11405 PF05658 Head domain of trimeric autotransporter adhesin NDN13_11415 PF01758 Sodium Bile acid symporter family NDN13_11420 PF01022 Bacterial regulatory protein, arsR family NDN13_11425 PF03960 ArsC family NDN13_11440 PF13673 Acetyltransferase (GNAT) domain NDN13_11445 PF01381 Helix-turn-helix NDN13_11460 PF00563 EAL domain NDN13_11460 PF03707 Bacterial signalling protein N terminal repeat NDN13_11460 PF00990 Diguanylate cyclase, GGDEF domain NDN13_11465 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NDN13_11465 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NDN13_11470 PF10369 Small subunit of acetolactate synthase NDN13_11475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN13_11475 PF00205 Thiamine pyrophosphate enzyme, central domain NDN13_11475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN13_11485 PF09334 tRNA synthetases class I (M) NDN13_11485 PF13603 Leucyl-tRNA synthetase, Domain 2 NDN13_11485 PF00133 tRNA synthetases class I (I, L, M and V) NDN13_11485 PF08264 Anticodon-binding domain of tRNA NDN13_11500 PF02146 Sir2 family NDN13_11505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_11510 PF00005 ABC transporter NDN13_11510 PF12704 MacB-like periplasmic core domain NDN13_11510 PF02687 FtsX-like permease family NDN13_11515 PF02321 Outer membrane efflux protein NDN13_11535 PF00929 Exonuclease NDN13_11540 PF03193 RsgA GTPase NDN13_11550 PF00462 Glutaredoxin NDN13_11555 PF02556 Preprotein translocase subunit SecB NDN13_11575 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA NDN13_11580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN13_11580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN13_11590 PF04127 DNA / pantothenate metabolism flavoprotein NDN13_11590 PF02441 Flavoprotein NDN13_11595 PF04002 RadC-like JAB domain NDN13_11600 PF01062 Bestrophin, RFP-TM, chloride channel NDN13_11605 PF00248 Aldo/keto reductase family NDN13_11610 PF03466 LysR substrate binding domain NDN13_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_11615 PF02811 PHP domain NDN13_11620 PF04279 Intracellular septation protein A NDN13_11635 PF01266 FAD dependent oxidoreductase NDN13_11635 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NDN13_11645 PF04461 Protein of unknown function (DUF520) NDN13_11660 PF13185 GAF domain NDN13_11665 PF03061 Thioesterase superfamily NDN13_11670 PF00085 Thioredoxin NDN13_11675 PF00561 alpha/beta hydrolase fold NDN13_11680 PF04273 Putative phosphatase (DUF442) NDN13_11680 PF00753 Metallo-beta-lactamase superfamily NDN13_11720 PF17152 Periplasmic sensor domain NDN13_11720 PF00990 Diguanylate cyclase, GGDEF domain NDN13_11725 PF01389 OmpA-like transmembrane domain NDN13_11725 PF00691 OmpA family NDN13_11730 PF00149 Calcineurin-like phosphoesterase NDN13_11730 PF10518 TAT (twin-arginine translocation) pathway signal sequence NDN13_11735 PF13091 PLD-like domain NDN13_11750 PF13167 GTP-binding GTPase N-terminal NDN13_11750 PF01926 50S ribosome-binding GTPase NDN13_11750 PF16360 GTP-binding GTPase Middle Region NDN13_11775 PF17804 Tail specific protease N-terminal domain NDN13_11775 PF03572 Peptidase family S41 NDN13_11775 PF00595 PDZ domain NDN13_11775 PF11818 C-terminal domain of tail specific protease (DUF3340) NDN13_11780 PF00933 Glycosyl hydrolase family 3 N terminal domain NDN13_11790 PF12697 Alpha/beta hydrolase family NDN13_11790 PF08241 Methyltransferase domain NDN13_11795 PF00171 Aldehyde dehydrogenase family NDN13_11800 PF00871 Acetokinase family NDN13_11805 PF07085 DRTGG domain NDN13_11805 PF01515 Phosphate acetyl/butaryl transferase NDN13_11815 PF00892 EamA-like transporter family NDN13_11820 PF02311 AraC-like ligand binding domain NDN13_11820 PF12833 Helix-turn-helix domain NDN13_11825 PF05683 Fumarase C-terminus NDN13_11825 PF05681 Fumarate hydratase (Fumerase) NDN13_11845 PF06689 ClpX C4-type zinc finger NDN13_11845 PF10431 C-terminal, D2-small domain, of ClpB protein NDN13_11845 PF07724 AAA domain (Cdc48 subfamily) NDN13_11850 PF00574 Clp protease NDN13_11855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_11855 PF05698 Bacterial trigger factor protein (TF) C-terminus NDN13_11855 PF05697 Bacterial trigger factor protein (TF) NDN13_11860 PF07715 TonB-dependent Receptor Plug Domain NDN13_11860 PF00593 TonB dependent receptor NDN13_11865 PF07715 TonB-dependent Receptor Plug Domain NDN13_11865 PF00593 TonB dependent receptor NDN13_11870 PF13640 2OG-Fe(II) oxygenase superfamily NDN13_11870 PF18331 PKHD-type hydroxylase C-terminal domain NDN13_11875 PF01070 FMN-dependent dehydrogenase NDN13_11880 PF07715 TonB-dependent Receptor Plug Domain NDN13_11880 PF00593 TonB dependent receptor NDN13_11885 PF13640 2OG-Fe(II) oxygenase superfamily NDN13_11885 PF18331 PKHD-type hydroxylase C-terminal domain NDN13_11890 PF00682 HMGL-like NDN13_11890 PF08502 LeuA allosteric (dimerisation) domain NDN13_11895 PF00561 alpha/beta hydrolase fold NDN13_11900 PF00561 alpha/beta hydrolase fold NDN13_11900 PF07021 Methionine biosynthesis protein MetW NDN13_11915 PF01725 Ham1 family NDN13_11925 PF02416 mttA/Hcf106 family NDN13_11930 PF02416 mttA/Hcf106 family NDN13_11935 PF00902 Sec-independent protein translocase protein (TatC) NDN13_11955 PF00245 Alkaline phosphatase NDN13_11965 PF01790 Prolipoprotein diacylglyceryl transferase NDN13_11975 PF03358 NADPH-dependent FMN reductase NDN13_11980 PF03631 Virulence factor BrkB NDN13_11990 PF12833 Helix-turn-helix domain NDN13_11995 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN13_12045 PF01970 Tripartite tricarboxylate transporter TctA family NDN13_12050 PF05145 Transition state regulatory protein AbrB NDN13_12075 PF08206 Ribonuclease B OB domain NDN13_12075 PF17876 Cold shock domain NDN13_12075 PF08461 Ribonuclease R winged-helix domain NDN13_12075 PF00773 RNB domain NDN13_12075 PF00575 S1 RNA binding domain NDN13_12085 PF01432 Peptidase family M3 NDN13_12105 PF12833 Helix-turn-helix domain NDN13_12110 PF00892 EamA-like transporter family NDN13_12115 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) NDN13_12150 PF03937 Flavinator of succinate dehydrogenase NDN13_12155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_12155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_12155 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_12165 PF00743 Flavin-binding monooxygenase-like NDN13_12175 PF01196 Ribosomal protein L17 NDN13_12180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDN13_12180 PF01000 RNA polymerase Rpb3/RpoA insert domain NDN13_12180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDN13_12185 PF00163 Ribosomal protein S4/S9 N-terminal domain NDN13_12185 PF01479 S4 domain NDN13_12190 PF00411 Ribosomal protein S11 NDN13_12195 PF00416 Ribosomal protein S13/S18 NDN13_12200 PF00444 Ribosomal protein L36 NDN13_12205 PF00344 SecY translocase NDN13_12210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDN13_12215 PF00327 Ribosomal protein L30p/L7e NDN13_12220 PF00333 Ribosomal protein S5, N-terminal domain NDN13_12220 PF03719 Ribosomal protein S5, C-terminal domain NDN13_12225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDN13_12230 PF00347 Ribosomal protein L6 NDN13_12235 PF00410 Ribosomal protein S8 NDN13_12240 PF00253 Ribosomal protein S14p/S29e NDN13_12245 PF00281 Ribosomal protein L5 NDN13_12245 PF00673 ribosomal L5P family C-terminus NDN13_12250 PF00467 KOW motif NDN13_12250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDN13_12255 PF00238 Ribosomal protein L14p/L23e NDN13_12260 PF00366 Ribosomal protein S17 NDN13_12265 PF00831 Ribosomal L29 protein NDN13_12270 PF00252 Ribosomal protein L16p/L10e NDN13_12280 PF00237 Ribosomal protein L22p/L17e NDN13_12285 PF00203 Ribosomal protein S19 NDN13_12290 PF03947 Ribosomal Proteins L2, C-terminal domain NDN13_12290 PF00181 Ribosomal Proteins L2, RNA binding domain NDN13_12295 PF00276 Ribosomal protein L23 NDN13_12300 PF00573 Ribosomal protein L4/L1 family NDN13_12305 PF00297 Ribosomal protein L3 NDN13_12310 PF00338 Ribosomal protein S10p/S20e NDN13_12315 PF00117 Glutamine amidotransferase class-I NDN13_12320 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN13_12325 PF05872 Bacterial protein of unknown function (DUF853) NDN13_12330 PF00175 Oxidoreductase NAD-binding domain NDN13_12330 PF00970 Oxidoreductase FAD-binding domain NDN13_12330 PF00042 Globin NDN13_12335 PF02082 Transcriptional regulator NDN13_12340 PF01926 50S ribosome-binding GTPase NDN13_12350 PF00375 Sodium:dicarboxylate symporter family NDN13_12360 PF01553 Acyltransferase NDN13_12365 PF07859 alpha/beta hydrolase fold NDN13_12395 PF00270 DEAD/DEAH box helicase NDN13_12395 PF00271 Helicase conserved C-terminal domain NDN13_12395 PF17191 RecG wedge domain NDN13_12400 PF00156 Phosphoribosyl transferase domain NDN13_12405 PF00293 NUDIX domain NDN13_12410 PF03641 Possible lysine decarboxylase NDN13_12415 PF01544 CorA-like Mg2+ transporter protein NDN13_12430 PF05494 MlaC protein NDN13_12435 PF02470 MlaD protein NDN13_12440 PF02405 Permease MlaE NDN13_12445 PF00005 ABC transporter NDN13_12450 PF12343 Cold shock protein DEAD box A NDN13_12450 PF00271 Helicase conserved C-terminal domain NDN13_12450 PF03880 DbpA RNA binding domain NDN13_12450 PF00270 DEAD/DEAH box helicase NDN13_12460 PF00459 Inositol monophosphatase family NDN13_12465 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDN13_12465 PF02779 Transketolase, pyrimidine binding domain NDN13_12465 PF02780 Transketolase, C-terminal domain NDN13_12470 PF00925 GTP cyclohydrolase II NDN13_12480 PF01218 Coproporphyrinogen III oxidase NDN13_12485 PF00300 Histidine phosphatase superfamily (branch 1) NDN13_12490 PF08501 Shikimate dehydrogenase substrate binding domain NDN13_12490 PF01488 Shikimate / quinate 5-dehydrogenase NDN13_12490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDN13_12500 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN13_12500 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_12500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_12500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_12510 PF04024 PspC domain NDN13_12520 PF00939 Sodium:sulfate symporter transmembrane region NDN13_12540 PF02091 Glycyl-tRNA synthetase alpha subunit NDN13_12545 PF02092 Glycyl-tRNA synthetase beta subunit NDN13_12545 PF05746 DALR anticodon binding domain NDN13_12575 PF00082 Subtilase family NDN13_12595 PF08241 Methyltransferase domain NDN13_12610 PF01209 ubiE/COQ5 methyltransferase family NDN13_12620 PF13614 AAA domain NDN13_12625 PF01594 AI-2E family transporter NDN13_12630 PF00080 Copper/zinc superoxide dismutase (SODC) NDN13_12635 PF12805 FUSC-like inner membrane protein yccS NDN13_12640 PF07690 Major Facilitator Superfamily NDN13_12655 PF02525 Flavodoxin-like fold NDN13_12660 PF03992 Antibiotic biosynthesis monooxygenase NDN13_12710 PF02913 FAD linked oxidases, C-terminal domain NDN13_12710 PF01565 FAD binding domain NDN13_12715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN13_12715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN13_12720 PF00892 EamA-like transporter family NDN13_12725 PF00892 EamA-like transporter family NDN13_12730 PF01925 Sulfite exporter TauE/SafE NDN13_12735 PF09157 Pseudouridine synthase II TruB, C-terminal NDN13_12735 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDN13_12735 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDN13_12740 PF01245 Ribosomal protein L19 NDN13_12745 PF01746 tRNA (Guanine-1)-methyltransferase NDN13_12750 PF05239 PRC-barrel domain NDN13_12750 PF01782 RimM N-terminal domain NDN13_12755 PF00886 Ribosomal protein S16 NDN13_12820 PF00114 Pilin (bacterial filament) NDN13_12820 PF07963 Prokaryotic N-terminal methylation motif NDN13_12825 PF02401 LytB protein NDN13_12830 PF00625 Guanylate kinase NDN13_12835 PF01192 RNA polymerase Rpb6 NDN13_12840 PF04607 Region found in RelA / SpoT proteins NDN13_12840 PF02824 TGS domain NDN13_12840 PF13291 ACT domain NDN13_12845 PF01042 Endoribonuclease L-PSP NDN13_12850 PF04324 BFD-like [2Fe-2S] binding domain NDN13_12855 PF00210 Ferritin-like domain NDN13_12860 PF15864 Protein glycosylation ligase NDN13_12860 PF04932 O-Antigen ligase NDN13_12860 PF11846 Virulence factor membrane-bound polymerase, C-terminal NDN13_12885 PF07963 Prokaryotic N-terminal methylation motif NDN13_12885 PF00114 Pilin (bacterial filament) NDN13_12895 PF04536 TPM domain NDN13_12900 PF04011 LemA family NDN13_12910 PF07690 Major Facilitator Superfamily NDN13_12915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN13_12915 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_12920 PF00310 Glutamine amidotransferases class-II NDN13_12920 PF04898 Glutamate synthase central domain NDN13_12920 PF01645 Conserved region in glutamate synthase NDN13_12920 PF01493 GXGXG motif NDN13_12930 PF01761 3-dehydroquinate synthase NDN13_12935 PF01202 Shikimate kinase NDN13_12940 PF11741 AMIN domain NDN13_12940 PF00263 Bacterial type II and III secretion system protein NDN13_12940 PF03958 Bacterial type II/III secretion system short domain NDN13_12940 PF07660 Secretin and TonB N terminus short domain NDN13_12950 PF04350 Pilus assembly protein, PilO NDN13_12955 PF05137 Fimbrial assembly protein (PilN) NDN13_12960 PF11104 Type IV pilus assembly protein PilM; NDN13_12965 PF00912 Transglycosylase NDN13_12965 PF00905 Penicillin binding protein transpeptidase domain NDN13_12965 PF17092 Penicillin-binding protein OB-like domain NDN13_12970 PF13847 Methyltransferase domain NDN13_12975 PF00953 Glycosyl transferase family 4 NDN13_12980 PF01225 Mur ligase family, catalytic domain NDN13_12980 PF02875 Mur ligase family, glutamate ligase domain NDN13_12980 PF08245 Mur ligase middle domain NDN13_12985 PF01225 Mur ligase family, catalytic domain NDN13_12985 PF02875 Mur ligase family, glutamate ligase domain NDN13_12985 PF08245 Mur ligase middle domain NDN13_13000 PF01795 MraW methylase family NDN13_13015 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN13_13030 PF00324 Amino acid permease NDN13_13060 PF01545 Cation efflux family NDN13_13065 PF00873 AcrB/AcrD/AcrF family NDN13_13070 PF00529 HlyD membrane-fusion protein of T1SS NDN13_13070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_13095 PF00005 ABC transporter NDN13_13095 PF12848 ABC transporter NDN13_13100 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN13_13105 PF00106 short chain dehydrogenase NDN13_13110 PF00501 AMP-binding enzyme NDN13_13110 PF13193 AMP-binding enzyme C-terminal domain NDN13_13110 PF00668 Condensation domain NDN13_13110 PF07993 Male sterility protein NDN13_13110 PF00550 Phosphopantetheine attachment site NDN13_13115 PF13411 MerR HTH family regulatory protein NDN13_13120 PF00083 Sugar (and other) transporter NDN13_13130 PF03600 Citrate transporter NDN13_13135 PF03466 LysR substrate binding domain NDN13_13135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13175 PF09371 Tex-like protein N-terminal domain NDN13_13175 PF16921 Tex protein YqgF-like domain NDN13_13175 PF17674 HHH domain NDN13_13175 PF00575 S1 RNA binding domain NDN13_13180 PF00072 Response regulator receiver domain NDN13_13180 PF00486 Transcriptional regulatory protein, C terminal NDN13_13185 PF00672 HAMP domain NDN13_13185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_13185 PF00512 His Kinase A (phospho-acceptor) domain NDN13_13190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDN13_13190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDN13_13225 PF00475 Imidazoleglycerol-phosphate dehydratase NDN13_13230 PF00117 Glutamine amidotransferase class-I NDN13_13245 PF00977 Histidine biosynthesis protein NDN13_13250 PF01740 STAS domain NDN13_13250 PF00916 Sulfate permease family NDN13_13265 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN13_13265 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_13265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_13270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_13270 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN13_13275 PF00296 Luciferase-like monooxygenase NDN13_13290 PF01636 Phosphotransferase enzyme family NDN13_13295 PF00977 Histidine biosynthesis protein NDN13_13310 PF00230 Major intrinsic protein NDN13_13325 PF02705 K+ potassium transporter NDN13_13350 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_13350 PF04717 Type VI secretion system, phage-baseplate injector NDN13_13350 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_13380 PF01593 Flavin containing amine oxidoreductase NDN13_13385 PF02678 Pirin NDN13_13385 PF05726 Pirin C-terminal cupin domain NDN13_13390 PF00857 Isochorismatase family NDN13_13395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13400 PF03466 LysR substrate binding domain NDN13_13405 PF00857 Isochorismatase family NDN13_13410 PF00436 Single-strand binding protein family NDN13_13415 PF07690 Major Facilitator Superfamily NDN13_13425 PF02581 Thiamine monophosphate synthase NDN13_13425 PF03070 TENA/THI-4/PQQC family NDN13_13425 PF08543 Phosphomethylpyrimidine kinase NDN13_13435 PF09277 Erythronolide synthase, docking NDN13_13435 PF16197 Ketoacyl-synthetase C-terminal extension NDN13_13435 PF00550 Phosphopantetheine attachment site NDN13_13435 PF08659 KR domain NDN13_13435 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN13_13435 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN13_13435 PF14765 Polyketide synthase dehydratase NDN13_13435 PF00698 Acyl transferase domain NDN13_13435 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_13435 PF08990 Erythronolide synthase docking NDN13_13440 PF00440 Bacterial regulatory proteins, tetR family NDN13_13440 PF16925 Tetracyclin repressor-like, C-terminal domain NDN13_13445 PF17755 UvrA DNA-binding domain NDN13_13445 PF17760 UvrA interaction domain NDN13_13450 PF00990 Diguanylate cyclase, GGDEF domain NDN13_13455 PF01037 Lrp/AsnC ligand binding domain NDN13_13460 PF00266 Aminotransferase class-V NDN13_13465 PF00324 Amino acid permease NDN13_13480 PF00905 Penicillin binding protein transpeptidase domain NDN13_13490 PF00072 Response regulator receiver domain NDN13_13490 PF00196 Bacterial regulatory proteins, luxR family NDN13_13495 PF03358 NADPH-dependent FMN reductase NDN13_13500 PF00296 Luciferase-like monooxygenase NDN13_13505 PF01037 Lrp/AsnC ligand binding domain NDN13_13510 PF00857 Isochorismatase family NDN13_13515 PF16177 Acetyl-coenzyme A synthetase N-terminus NDN13_13515 PF00501 AMP-binding enzyme NDN13_13515 PF13193 AMP-binding enzyme C-terminal domain NDN13_13525 PF00924 Mechanosensitive ion channel NDN13_13530 PF04452 RNA methyltransferase NDN13_13535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDN13_13545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN13_13570 PF01368 DHH family NDN13_13570 PF02272 DHHA1 domain NDN13_13570 PF17768 RecJ OB domain NDN13_13575 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDN13_13575 PF01243 Pyridoxamine 5'-phosphate oxidase NDN13_13580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN13_13580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN13_13580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN13_13580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN13_13585 PF00571 CBS domain NDN13_13585 PF00478 IMP dehydrogenase / GMP reductase domain NDN13_13590 PF00258 Flavodoxin NDN13_13590 PF01613 Flavin reductase like domain NDN13_13595 PF01169 Uncharacterized protein family UPF0016 NDN13_13605 PF02817 e3 binding domain NDN13_13605 PF00364 Biotin-requiring enzyme NDN13_13605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN13_13610 PF00456 Transketolase, thiamine diphosphate binding domain NDN13_13610 PF17831 Pyruvate dehydrogenase E1 component middle domain NDN13_13625 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDN13_13630 PF12327 FtsZ family, C-terminal domain NDN13_13630 PF00091 Tubulin/FtsZ family, GTPase domain NDN13_13635 PF02491 SHS2 domain inserted in FTSA NDN13_13640 PF03799 Cell division protein FtsQ NDN13_13640 PF08478 POTRA domain, FtsQ-type NDN13_13645 PF01820 D-ala D-ala ligase N-terminus NDN13_13645 PF07478 D-ala D-ala ligase C-terminus NDN13_13650 PF01225 Mur ligase family, catalytic domain NDN13_13650 PF02875 Mur ligase family, glutamate ligase domain NDN13_13650 PF08245 Mur ligase middle domain NDN13_13655 PF04101 Glycosyltransferase family 28 C-terminal domain NDN13_13655 PF03033 Glycosyltransferase family 28 N-terminal domain NDN13_13660 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDN13_13660 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDN13_13665 PF00255 Glutathione peroxidase NDN13_13670 PF01047 MarR family NDN13_13685 PF00145 C-5 cytosine-specific DNA methylase NDN13_13690 PF00145 C-5 cytosine-specific DNA methylase NDN13_13705 PF00106 short chain dehydrogenase NDN13_13715 PF01820 D-ala D-ala ligase N-terminus NDN13_13715 PF07478 D-ala D-ala ligase C-terminus NDN13_13720 PF00156 Phosphoribosyl transferase domain NDN13_13725 PF03372 Endonuclease/Exonuclease/phosphatase family NDN13_13730 PF03960 ArsC family NDN13_13740 PF07859 alpha/beta hydrolase fold NDN13_13745 PF00990 Diguanylate cyclase, GGDEF domain NDN13_13745 PF17151 Periplasmic sensor domain NDN13_13755 PF11412 Disulphide bond corrector protein DsbC NDN13_13755 PF02683 Cytochrome C biogenesis protein transmembrane region NDN13_13790 PF00005 ABC transporter NDN13_13795 PF00005 ABC transporter NDN13_13795 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN13_13805 PF02653 Branched-chain amino acid transport system / permease component NDN13_13815 PF00204 DNA gyrase B NDN13_13815 PF00986 DNA gyrase B subunit, carboxyl terminus NDN13_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_13815 PF01751 Toprim domain NDN13_13820 PF05728 Uncharacterised protein family (UPF0227) NDN13_13855 PF01471 Putative peptidoglycan binding domain NDN13_13855 PF01476 LysM domain NDN13_13855 PF01510 N-acetylmuramoyl-L-alanine amidase NDN13_13860 PF04717 Type VI secretion system, phage-baseplate injector NDN13_13860 PF13296 Putative type VI secretion system Rhs element Vgr NDN13_13860 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN13_13865 PF02600 Disulfide bond formation protein DsbB NDN13_13870 PF04262 Glutamate-cysteine ligase NDN13_13885 PF04286 Protein of unknown function (DUF445) NDN13_13890 PF00155 Aminotransferase class I and II NDN13_13895 PF01554 MatE NDN13_13900 PF00106 short chain dehydrogenase NDN13_13910 PF00072 Response regulator receiver domain NDN13_13910 PF00486 Transcriptional regulatory protein, C terminal NDN13_13915 PF11808 Phosphate regulon sensor protein PhoR NDN13_13915 PF00989 PAS fold NDN13_13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_13915 PF00512 His Kinase A (phospho-acceptor) domain NDN13_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13930 PF03466 LysR substrate binding domain NDN13_13935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13935 PF03466 LysR substrate binding domain NDN13_13940 PF02567 Phenazine biosynthesis-like protein NDN13_13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_13950 PF03466 LysR substrate binding domain NDN13_13955 PF02666 Phosphatidylserine decarboxylase NDN13_13960 PF00581 Rhodanese-like domain NDN13_13965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN13_13965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDN13_13975 PF06628 Catalase-related immune-responsive NDN13_13975 PF00199 Catalase NDN13_13980 PF02580 D-Tyr-tRNA(Tyr) deacylase NDN13_14005 PF00925 GTP cyclohydrolase II NDN13_14005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN13_14010 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDN13_14015 PF01029 NusB family NDN13_14020 PF00586 AIR synthase related protein, N-terminal domain NDN13_14020 PF02769 AIR synthase related protein, C-terminal domain NDN13_14025 PF04608 Phosphatidylglycerophosphatase A NDN13_14030 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_14030 PF14602 Hexapeptide repeat of succinyl-transferase NDN13_14030 PF12804 MobA-like NTP transferase domain NDN13_14035 PF01380 SIS domain NDN13_14045 PF01037 Lrp/AsnC ligand binding domain NDN13_14050 PF00857 Isochorismatase family NDN13_14055 PF00701 Dihydrodipicolinate synthetase family NDN13_14065 PF01259 SAICAR synthetase NDN13_14070 PF07715 TonB-dependent Receptor Plug Domain NDN13_14070 PF00593 TonB dependent receptor NDN13_14085 PF00892 EamA-like transporter family NDN13_14090 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_14090 PF16193 AAA C-terminal domain NDN13_14090 PF12002 MgsA AAA+ ATPase C terminal NDN13_14095 PF00144 Beta-lactamase NDN13_14100 PF07995 Glucose / Sorbosone dehydrogenase NDN13_14105 PF03692 Putative zinc- or iron-chelating domain NDN13_14110 PF07043 Protein of unknown function (DUF1328) NDN13_14120 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN13_14120 PF14815 NUDIX domain NDN13_14120 PF10576 Iron-sulfur binding domain of endonuclease III NDN13_14120 PF00633 Helix-hairpin-helix motif NDN13_14135 PF03352 Methyladenine glycosylase NDN13_14140 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_14140 PF00107 Zinc-binding dehydrogenase NDN13_14145 PF00155 Aminotransferase class I and II NDN13_14145 PF00392 Bacterial regulatory proteins, gntR family NDN13_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_14155 PF03466 LysR substrate binding domain NDN13_14160 PF00248 Aldo/keto reductase family NDN13_14165 PF07690 Major Facilitator Superfamily NDN13_14175 PF05173 Dihydrodipicolinate reductase, C-terminus NDN13_14175 PF01113 Dihydrodipicolinate reductase, N-terminus NDN13_14185 PF00226 DnaJ domain NDN13_14185 PF00684 DnaJ central domain NDN13_14185 PF01556 DnaJ C terminal domain NDN13_14195 PF00873 AcrB/AcrD/AcrF family NDN13_14200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_14205 PF00440 Bacterial regulatory proteins, tetR family NDN13_14210 PF00311 Phosphoenolpyruvate carboxylase NDN13_14215 PF00860 Permease family NDN13_14225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_14225 PF03466 LysR substrate binding domain NDN13_14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_14230 PF03466 LysR substrate binding domain NDN13_14245 PF00920 Dehydratase family NDN13_14250 PF02911 Formyl transferase, C-terminal domain NDN13_14250 PF00551 Formyl transferase NDN13_14255 PF01189 16S rRNA methyltransferase RsmB/F NDN13_14255 PF01029 NusB family NDN13_14270 PF00209 Sodium:neurotransmitter symporter family NDN13_14275 PF00171 Aldehyde dehydrogenase family NDN13_14285 PF02080 TrkA-C domain NDN13_14285 PF03600 Citrate transporter NDN13_14325 PF00579 tRNA synthetases class I (W and Y) NDN13_14330 PF03702 Anhydro-N-acetylmuramic acid kinase NDN13_14335 PF01521 Iron-sulphur cluster biosynthesis NDN13_14360 PF00005 ABC transporter NDN13_14360 PF12848 ABC transporter NDN13_14365 PF09335 SNARE associated Golgi protein NDN13_14380 PF01751 Toprim domain NDN13_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_14380 PF00204 DNA gyrase B NDN13_14380 PF00986 DNA gyrase B subunit, carboxyl terminus NDN13_14380 PF18053 DNA gyrase B subunit insert domain NDN13_14385 PF02463 RecF/RecN/SMC N terminal domain NDN13_14390 PF00712 DNA polymerase III beta subunit, N-terminal domain NDN13_14390 PF02767 DNA polymerase III beta subunit, central domain NDN13_14390 PF02768 DNA polymerase III beta subunit, C-terminal domain NDN13_14395 PF08299 Bacterial dnaA protein helix-turn-helix NDN13_14395 PF11638 DnaA N-terminal domain NDN13_14395 PF00308 Bacterial dnaA protein NDN13_14400 PF00468 Ribosomal protein L34 NDN13_14405 PF00825 Ribonuclease P NDN13_14410 PF01809 Putative membrane protein insertion efficiency factor NDN13_14415 PF02096 60Kd inner membrane protein NDN13_14415 PF14849 YidC periplasmic domain NDN13_14420 PF01926 50S ribosome-binding GTPase NDN13_14420 PF12631 MnmE helical domain NDN13_14420 PF10396 GTP-binding protein TrmE N-terminus NDN13_14425 PF00437 Type II/IV secretion system protein NDN13_14430 PF10411 Disulfide bond isomerase protein N-terminus NDN13_14430 PF13098 Thioredoxin-like domain NDN13_14435 PF04226 Transglycosylase associated protein NDN13_14440 PF00156 Phosphoribosyl transferase domain NDN13_14445 PF01979 Amidohydrolase family NDN13_14455 PF03741 Integral membrane protein TerC family NDN13_14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_14465 PF03466 LysR substrate binding domain NDN13_14470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_14470 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_14470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_14485 PF00106 short chain dehydrogenase NDN13_14495 PF08245 Mur ligase middle domain NDN13_14495 PF01225 Mur ligase family, catalytic domain NDN13_14495 PF02875 Mur ligase family, glutamate ligase domain NDN13_14510 PF00731 AIR carboxylase NDN13_14515 PF02222 ATP-grasp domain NDN13_14515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDN13_14525 PF13406 Transglycosylase SLT domain NDN13_14555 PF12706 Beta-lactamase superfamily domain NDN13_14560 PF00012 Hsp70 protein NDN13_14565 PF01025 GrpE NDN13_14570 PF03466 LysR substrate binding domain NDN13_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_14585 PF07859 alpha/beta hydrolase fold NDN13_14590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN13_14625 PF02463 RecF/RecN/SMC N terminal domain NDN13_14635 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_14640 PF01252 Signal peptidase (SPase) II NDN13_14645 PF08264 Anticodon-binding domain of tRNA NDN13_14645 PF06827 Zinc finger found in FPG and IleRS NDN13_14645 PF00133 tRNA synthetases class I (I, L, M and V) NDN13_14650 PF06574 FAD synthetase NDN13_14650 PF01687 Riboflavin kinase NDN13_14670 PF17938 Tetracyclin repressor-like, C-terminal domain NDN13_14670 PF00440 Bacterial regulatory proteins, tetR family NDN13_14675 PF00005 ABC transporter NDN13_14680 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_14685 PF00296 Luciferase-like monooxygenase NDN13_14690 PF09084 NMT1/THI5 like NDN13_14695 PF09084 NMT1/THI5 like NDN13_14700 PF00696 Amino acid kinase family NDN13_14700 PF00583 Acetyltransferase (GNAT) family NDN13_14710 PF00106 short chain dehydrogenase NDN13_14715 PF13419 Haloacid dehalogenase-like hydrolase NDN13_14725 PF01323 DSBA-like thioredoxin domain NDN13_14730 PF08360 QacR-like protein, C-terminal region NDN13_14730 PF00440 Bacterial regulatory proteins, tetR family NDN13_14735 PF00440 Bacterial regulatory proteins, tetR family NDN13_14740 PF00175 Oxidoreductase NAD-binding domain NDN13_14745 PF00487 Fatty acid desaturase NDN13_14750 PF01138 3' exoribonuclease family, domain 1 NDN13_14750 PF03725 3' exoribonuclease family, domain 2 NDN13_14755 PF05506 Domain of unknown function (DUF756) NDN13_14755 PF04185 Phosphoesterase family NDN13_14770 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NDN13_14770 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NDN13_14775 PF01510 N-acetylmuramoyl-L-alanine amidase NDN13_14780 PF03023 Lipid II flippase MurJ NDN13_14785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_14785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN13_14790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_14790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN13_14795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_14795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN13_14800 PF13807 G-rich domain on putative tyrosine kinase NDN13_14800 PF02706 Chain length determinant protein NDN13_14800 PF13614 AAA domain NDN13_14805 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NDN13_14805 PF02563 Polysaccharide biosynthesis/export protein NDN13_14805 PF10531 SLBB domain NDN13_14810 PF16363 GDP-mannose 4,6 dehydratase NDN13_14815 PF00483 Nucleotidyl transferase NDN13_14820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN13_14835 PF00535 Glycosyl transferase family 2 NDN13_14835 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 NDN13_14840 PF13439 Glycosyltransferase Family 4 NDN13_14840 PF00534 Glycosyl transferases group 1 NDN13_14850 PF00535 Glycosyl transferase family 2 NDN13_14855 PF13477 Glycosyl transferase 4-like NDN13_14855 PF00534 Glycosyl transferases group 1 NDN13_14860 PF02397 Bacterial sugar transferase NDN13_14865 PF00483 Nucleotidyl transferase NDN13_14870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN13_14870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN13_14870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN13_14875 PF00342 Phosphoglucose isomerase NDN13_14880 PF16363 GDP-mannose 4,6 dehydratase NDN13_14885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN13_14885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN13_14885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN13_14885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN13_14890 PF02652 L-lactate permease NDN13_14895 PF00392 Bacterial regulatory proteins, gntR family NDN13_14895 PF07729 FCD domain NDN13_14900 PF01070 FMN-dependent dehydrogenase NDN13_14905 PF01565 FAD binding domain NDN13_14905 PF09330 D-lactate dehydrogenase, membrane binding NDN13_14910 PF00155 Aminotransferase class I and II NDN13_14915 PF00392 Bacterial regulatory proteins, gntR family NDN13_14915 PF07729 FCD domain NDN13_14925 PF00285 Citrate synthase, C-terminal domain NDN13_14930 PF00330 Aconitase family (aconitate hydratase) NDN13_14930 PF00694 Aconitase C-terminal domain NDN13_14935 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NDN13_14940 PF01850 PIN domain NDN13_14975 PF00849 RNA pseudouridylate synthase NDN13_14980 PF00583 Acetyltransferase (GNAT) family NDN13_14990 PF01061 ABC-2 type transporter NDN13_14995 PF00005 ABC transporter NDN13_15005 PF02563 Polysaccharide biosynthesis/export protein NDN13_15005 PF10531 SLBB domain NDN13_15010 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN13_15015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN13_15015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN13_15015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN13_15055 PF05159 Capsule polysaccharide biosynthesis protein NDN13_15060 PF05159 Capsule polysaccharide biosynthesis protein NDN13_15065 PF01037 Lrp/AsnC ligand binding domain NDN13_15070 PF01266 FAD dependent oxidoreductase NDN13_15075 PF01168 Alanine racemase, N-terminal domain NDN13_15075 PF00842 Alanine racemase, C-terminal domain NDN13_15080 PF01042 Endoribonuclease L-PSP NDN13_15085 PF00324 Amino acid permease NDN13_15095 PF00171 Aldehyde dehydrogenase family NDN13_15100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN13_15100 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN13_15105 PF00501 AMP-binding enzyme NDN13_15105 PF13193 AMP-binding enzyme C-terminal domain NDN13_15110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_15110 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_15110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_15115 PF00378 Enoyl-CoA hydratase/isomerase NDN13_15125 PF00083 Sugar (and other) transporter NDN13_15125 PF07690 Major Facilitator Superfamily NDN13_15130 PF00581 Rhodanese-like domain NDN13_15145 PF01722 BolA-like protein NDN13_15155 PF13614 AAA domain NDN13_15170 PF09335 SNARE associated Golgi protein NDN13_15175 PF07681 DoxX NDN13_15180 PF04076 Bacterial OB fold (BOF) protein NDN13_15185 PF04286 Protein of unknown function (DUF445) NDN13_15190 PF00117 Glutamine amidotransferase class-I NDN13_15190 PF00958 GMP synthase C terminal domain NDN13_15190 PF02540 NAD synthase NDN13_15195 PF13427 Domain of unknown function (DUF4111) NDN13_15195 PF01909 Nucleotidyltransferase domain NDN13_15205 PF03551 Transcriptional regulator PadR-like family NDN13_15210 PF01475 Ferric uptake regulator family NDN13_15225 PF02678 Pirin NDN13_15225 PF05726 Pirin C-terminal cupin domain NDN13_15245 PF03485 Arginyl tRNA synthetase N terminal domain NDN13_15245 PF05746 DALR anticodon binding domain NDN13_15245 PF00750 tRNA synthetases class I (R) NDN13_15250 PF04261 Dyp-type peroxidase family NDN13_15255 PF01810 LysE type translocator NDN13_15260 PF00950 ABC 3 transport family NDN13_15265 PF00005 ABC transporter NDN13_15285 PF00119 ATP synthase A chain NDN13_15290 PF00137 ATP synthase subunit C NDN13_15295 PF00430 ATP synthase B/B' CF(0) NDN13_15300 PF00213 ATP synthase delta (OSCP) subunit NDN13_15305 PF00306 ATP synthase alpha/beta chain, C terminal domain NDN13_15305 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN13_15305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN13_15310 PF00231 ATP synthase NDN13_15315 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN13_15315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN13_15320 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDN13_15345 PF00255 Glutathione peroxidase NDN13_15355 PF07690 Major Facilitator Superfamily NDN13_15360 PF07690 Major Facilitator Superfamily NDN13_15365 PF00440 Bacterial regulatory proteins, tetR family NDN13_15375 PF01300 Telomere recombination NDN13_15380 PF17782 DprA winged helix domain NDN13_15380 PF02481 DNA recombination-mediator protein A NDN13_15385 PF01476 LysM domain NDN13_15390 PF01327 Polypeptide deformylase NDN13_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_15415 PF00512 His Kinase A (phospho-acceptor) domain NDN13_15415 PF09456 RcsC Alpha-Beta-Loop (ABL) NDN13_15415 PF00072 Response regulator receiver domain NDN13_15420 PF04341 Protein of unknown function, DUF485 NDN13_15425 PF00474 Sodium:solute symporter family NDN13_15450 PF02028 BCCT, betaine/carnitine/choline family transporter NDN13_15490 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_15510 PF03358 NADPH-dependent FMN reductase NDN13_15520 PF13411 MerR HTH family regulatory protein NDN13_15530 PF07690 Major Facilitator Superfamily NDN13_15540 PF04055 Radical SAM superfamily NDN13_15540 PF11842 Domain of unknown function (DUF3362) NDN13_15540 PF08497 Radical SAM N-terminal NDN13_15560 PF06123 Inner membrane protein CreD NDN13_15565 PF00672 HAMP domain NDN13_15565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_15565 PF00512 His Kinase A (phospho-acceptor) domain NDN13_15570 PF00072 Response regulator receiver domain NDN13_15570 PF00486 Transcriptional regulatory protein, C terminal NDN13_15575 PF00817 impB/mucB/samB family NDN13_15575 PF11799 impB/mucB/samB family C-terminal domain NDN13_15575 PF11798 IMS family HHH motif NDN13_15590 PF07690 Major Facilitator Superfamily NDN13_15600 PF03641 Possible lysine decarboxylase NDN13_15610 PF03741 Integral membrane protein TerC family NDN13_15610 PF03471 Transporter associated domain NDN13_15615 PF02810 SEC-C motif NDN13_15620 PF03458 UPF0126 domain NDN13_15650 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN13_15650 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN13_15655 PF00501 AMP-binding enzyme NDN13_15655 PF13193 AMP-binding enzyme C-terminal domain NDN13_15670 PF00719 Inorganic pyrophosphatase NDN13_15685 PF01925 Sulfite exporter TauE/SafE NDN13_15695 PF01078 Magnesium chelatase, subunit ChlI NDN13_15695 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDN13_15705 PF00543 Nitrogen regulatory protein P-II NDN13_15710 PF00909 Ammonium Transporter Family NDN13_15715 PF03477 ATP cone domain NDN13_15720 PF01872 RibD C-terminal domain NDN13_15720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN13_15730 PF00230 Major intrinsic protein NDN13_15735 PF00677 Lumazine binding domain NDN13_15750 PF00883 Cytosol aminopeptidase family, catalytic domain NDN13_15750 PF02789 Cytosol aminopeptidase family, N-terminal domain NDN13_15755 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN13_15760 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN13_15765 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NDN13_15765 PF01676 Metalloenzyme superfamily NDN13_15770 PF17820 PDZ domain NDN13_15770 PF01471 Putative peptidoglycan binding domain NDN13_15770 PF03572 Peptidase family S41 NDN13_15775 PF02954 Bacterial regulatory protein, Fis family NDN13_15775 PF00072 Response regulator receiver domain NDN13_15775 PF00158 Sigma-54 interaction domain NDN13_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_15780 PF00512 His Kinase A (phospho-acceptor) domain NDN13_15785 PF00196 Bacterial regulatory proteins, luxR family NDN13_15785 PF00072 Response regulator receiver domain NDN13_15790 PF00768 D-alanyl-D-alanine carboxypeptidase NDN13_15805 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_15810 PF03447 Homoserine dehydrogenase, NAD binding domain NDN13_15810 PF00742 Homoserine dehydrogenase NDN13_15810 PF01842 ACT domain NDN13_15815 PF10411 Disulfide bond isomerase protein N-terminus NDN13_15815 PF13098 Thioredoxin-like domain NDN13_15820 PF02899 Phage integrase, N-terminal SAM-like domain NDN13_15820 PF00589 Phage integrase family NDN13_15830 PF07670 Nucleoside recognition NDN13_15830 PF07664 Ferrous iron transport protein B C terminus NDN13_15830 PF02421 Ferrous iron transport protein B NDN13_15840 PF02875 Mur ligase family, glutamate ligase domain NDN13_15840 PF08245 Mur ligase middle domain NDN13_15845 PF01098 Cell cycle protein NDN13_15850 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN13_15855 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDN13_15860 PF00149 Calcineurin-like phosphoesterase NDN13_15865 PF00293 NUDIX domain NDN13_15870 PF13667 ThiC-associated domain NDN13_15870 PF01964 Radical SAM ThiC family NDN13_15880 PF01895 PhoU domain NDN13_15885 PF04362 Bacterial Fe(2+) trafficking NDN13_15890 PF14698 Argininosuccinate lyase C-terminal NDN13_15890 PF00206 Lyase NDN13_15895 PF07694 5TMR of 5TMR-LYT NDN13_15895 PF06580 Histidine kinase NDN13_15895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_15900 PF04397 LytTr DNA-binding domain NDN13_15900 PF00072 Response regulator receiver domain NDN13_15905 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDN13_15905 PF03900 Porphobilinogen deaminase, C-terminal domain NDN13_15930 PF00816 H-NS histone family NDN13_15945 PF03958 Bacterial type II/III secretion system short domain NDN13_15945 PF00263 Bacterial type II and III secretion system protein NDN13_15950 PF00498 FHA domain NDN13_15950 PF12401 Protein of unknown function (DUF2662) NDN13_15955 PF13419 Haloacid dehalogenase-like hydrolase NDN13_15960 PF00425 chorismate binding enzyme NDN13_15960 PF04715 Anthranilate synthase component I, N terminal region NDN13_15985 PF03144 Elongation factor Tu domain 2 NDN13_15985 PF03143 Elongation factor Tu C-terminal domain NDN13_15985 PF00009 Elongation factor Tu GTP binding domain NDN13_15995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDN13_16000 PF00467 KOW motif NDN13_16000 PF02357 Transcription termination factor nusG NDN13_16005 PF00298 Ribosomal protein L11, RNA binding domain NDN13_16005 PF03946 Ribosomal protein L11, N-terminal domain NDN13_16010 PF00687 Ribosomal protein L1p/L10e family NDN13_16015 PF00466 Ribosomal protein L10 NDN13_16020 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN13_16020 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN13_16025 PF04560 RNA polymerase Rpb2, domain 7 NDN13_16025 PF04565 RNA polymerase Rpb2, domain 3 NDN13_16025 PF04561 RNA polymerase Rpb2, domain 2 NDN13_16025 PF04563 RNA polymerase beta subunit NDN13_16025 PF00562 RNA polymerase Rpb2, domain 6 NDN13_16025 PF10385 RNA polymerase beta subunit external 1 domain NDN13_16030 PF04997 RNA polymerase Rpb1, domain 1 NDN13_16030 PF00623 RNA polymerase Rpb1, domain 2 NDN13_16030 PF04983 RNA polymerase Rpb1, domain 3 NDN13_16030 PF05000 RNA polymerase Rpb1, domain 4 NDN13_16030 PF04998 RNA polymerase Rpb1, domain 5 NDN13_16055 PF13726 Na+-H+ antiporter family NDN13_16055 PF03553 Na+/H+ antiporter family NDN13_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_16070 PF00183 Hsp90 protein NDN13_16090 PF01323 DSBA-like thioredoxin domain NDN13_16100 PF00005 ABC transporter NDN13_16100 PF00664 ABC transporter transmembrane region NDN13_16110 PF00376 MerR family regulatory protein NDN13_16110 PF09278 MerR, DNA binding NDN13_16125 PF11724 YvbH-like oligomerisation region NDN13_16125 PF08000 Bacterial PH domain NDN13_16130 PF02803 Thiolase, C-terminal domain NDN13_16130 PF00108 Thiolase, N-terminal domain NDN13_16135 PF00378 Enoyl-CoA hydratase/isomerase NDN13_16135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN13_16135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN13_16150 PF01541 GIY-YIG catalytic domain NDN13_16150 PF08459 UvrC Helix-hairpin-helix N-terminal NDN13_16150 PF02151 UvrB/uvrC motif NDN13_16160 PF01066 CDP-alcohol phosphatidyltransferase NDN13_16185 PF13533 Biotin-lipoyl like NDN13_16190 PF03652 Holliday junction resolvase NDN13_16195 PF02622 Uncharacterized ACR, COG1678 NDN13_16200 PF02463 RecF/RecN/SMC N terminal domain NDN13_16205 PF06865 Pyrimidine/purine nucleoside phosphorylase NDN13_16210 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN13_16210 PF00588 SpoU rRNA Methylase family NDN13_16220 PF01121 Dephospho-CoA kinase NDN13_16225 PF06750 Bacterial Peptidase A24 N-terminal domain NDN13_16225 PF01478 Type IV leader peptidase family NDN13_16230 PF00482 Type II secretion system (T2SS), protein F NDN13_16235 PF00437 Type II/IV secretion system protein NDN13_16235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN13_16240 PF00121 Triosephosphate isomerase NDN13_16245 PF03840 Preprotein translocase SecG subunit NDN13_16265 PF02576 RimP N-terminal domain NDN13_16265 PF17384 RimP C-terminal SH3 domain NDN13_16270 PF13184 NusA-like KH domain NDN13_16270 PF08529 NusA N-terminal domain NDN13_16270 PF00575 S1 RNA binding domain NDN13_16275 PF11987 Translation-initiation factor 2 NDN13_16275 PF00009 Elongation factor Tu GTP binding domain NDN13_16275 PF08364 Bacterial translation initiation factor IF-2 associated region NDN13_16275 PF04760 Translation initiation factor IF-2, N-terminal region NDN13_16280 PF02033 Ribosome-binding factor A NDN13_16285 PF03334 Na+/H+ antiporter subunit NDN13_16290 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDN13_16295 PF01899 Na+/H+ ion antiporter subunit NDN13_16300 PF00361 Proton-conducting membrane transporter NDN13_16305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN13_16310 PF13244 Domain of unknown function (DUF4040) NDN13_16310 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDN13_16310 PF00361 Proton-conducting membrane transporter NDN13_16310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN13_16315 PF02463 RecF/RecN/SMC N terminal domain NDN13_16325 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN13_16330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN13_16335 PF01494 FAD binding domain NDN13_16340 PF01292 Prokaryotic cytochrome b561 NDN13_16345 PF03109 ABC1 family NDN13_16355 PF01209 ubiE/COQ5 methyltransferase family NDN13_16365 PF03976 Polyphosphate kinase 2 (PPK2) NDN13_16370 PF07690 Major Facilitator Superfamily NDN13_16380 PF17946 RecC C-terminal domain NDN13_16385 PF12705 PD-(D/E)XK nuclease superfamily NDN13_16385 PF00580 UvrD/REP helicase N-terminal domain NDN13_16385 PF13361 UvrD-like helicase C-terminal domain NDN13_16390 PF13538 UvrD-like helicase C-terminal domain NDN13_16395 PF00144 Beta-lactamase NDN13_16400 PF00312 Ribosomal protein S15 NDN13_16405 PF01138 3' exoribonuclease family, domain 1 NDN13_16405 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDN13_16405 PF00013 KH domain NDN13_16405 PF03725 3' exoribonuclease family, domain 2 NDN13_16405 PF00575 S1 RNA binding domain NDN13_16410 PF00375 Sodium:dicarboxylate symporter family NDN13_16415 PF01544 CorA-like Mg2+ transporter protein NDN13_16425 PF01556 DnaJ C terminal domain NDN13_16425 PF00226 DnaJ domain NDN13_16435 PF01430 Hsp33 protein NDN13_16440 PF00999 Sodium/hydrogen exchanger family NDN13_16440 PF02254 TrkA-N domain NDN13_16445 PF00270 DEAD/DEAH box helicase NDN13_16445 PF00271 Helicase conserved C-terminal domain NDN13_16445 PF17764 3′ DNA-binding domain (3′BD) NDN13_16445 PF18074 Primosomal protein N C-terminal domain NDN13_16445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDN13_16450 PF00482 Type II secretion system (T2SS), protein F NDN13_16455 PF07963 Prokaryotic N-terminal methylation motif NDN13_16455 PF08334 Type II secretion system (T2SS), protein G NDN13_16470 PF01588 Putative tRNA binding domain NDN13_16475 PF00795 Carbon-nitrogen hydrolase NDN13_16480 PF00571 CBS domain NDN13_16480 PF03471 Transporter associated domain NDN13_16485 PF01206 Sulfurtransferase TusA NDN13_16500 PF01177 Asp/Glu/Hydantoin racemase NDN13_16510 PF00762 Ferrochelatase NDN13_16515 PF00753 Metallo-beta-lactamase superfamily NDN13_16525 PF03884 DNA gyrase inhibitor YacG NDN13_16535 PF13247 4Fe-4S dicluster domain NDN13_16535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN13_16535 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_16540 PF00375 Sodium:dicarboxylate symporter family NDN13_16550 PF01613 Flavin reductase like domain NDN13_16555 PF00440 Bacterial regulatory proteins, tetR family NDN13_16575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDN13_16585 PF01197 Ribosomal protein L31 NDN13_16590 PF03109 ABC1 family NDN13_16595 PF01554 MatE NDN13_16605 PF06969 HemN C-terminal domain NDN13_16605 PF04055 Radical SAM superfamily NDN13_16620 PF00501 AMP-binding enzyme NDN13_16620 PF13193 AMP-binding enzyme C-terminal domain NDN13_16625 PF12111 Polyribonucleotide phosphorylase C terminal NDN13_16625 PF10150 Ribonuclease E/G family NDN13_16625 PF00575 S1 RNA binding domain NDN13_16630 PF00849 RNA pseudouridylate synthase NDN13_16630 PF01479 S4 domain NDN13_16635 PF13419 Haloacid dehalogenase-like hydrolase NDN13_16645 PF02798 Glutathione S-transferase, N-terminal domain NDN13_16650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_16650 PF03466 LysR substrate binding domain NDN13_16655 PF12706 Beta-lactamase superfamily domain NDN13_16670 PF00141 Peroxidase NDN13_16685 PF00391 PEP-utilising enzyme, mobile domain NDN13_16685 PF02896 PEP-utilising enzyme, TIM barrel domain NDN13_16685 PF01590 GAF domain NDN13_16685 PF05524 PEP-utilising enzyme, N-terminal NDN13_16690 PF00293 NUDIX domain NDN13_16715 PF03466 LysR substrate binding domain NDN13_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_16725 PF00330 Aconitase family (aconitate hydratase) NDN13_16730 PF00694 Aconitase C-terminal domain NDN13_16740 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN13_16755 PF01176 Translation initiation factor 1A / IF-1 NDN13_16765 PF01416 tRNA pseudouridine synthase NDN13_16785 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN13_16785 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN13_16815 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN13_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_16820 PF03466 LysR substrate binding domain NDN13_16835 PF00248 Aldo/keto reductase family NDN13_16840 PF00171 Aldehyde dehydrogenase family NDN13_16845 PF00083 Sugar (and other) transporter NDN13_16850 PF00005 ABC transporter NDN13_16850 PF12848 ABC transporter NDN13_16850 PF16326 ABC transporter C-terminal domain NDN13_16855 PF04102 SlyX NDN13_16860 PF08240 Alcohol dehydrogenase GroES-like domain NDN13_16860 PF00107 Zinc-binding dehydrogenase NDN13_16865 PF01638 HxlR-like helix-turn-helix NDN13_16875 PF08272 Topoisomerase I zinc-ribbon-like NDN13_16875 PF01131 DNA topoisomerase NDN13_16875 PF01751 Toprim domain NDN13_16875 PF01396 Topoisomerase DNA binding C4 zinc finger NDN13_16890 PF00580 UvrD/REP helicase N-terminal domain NDN13_16890 PF13361 UvrD-like helicase C-terminal domain NDN13_16920 PF00999 Sodium/hydrogen exchanger family NDN13_16920 PF02254 TrkA-N domain NDN13_16925 PF00471 Ribosomal protein L33 NDN13_16930 PF00830 Ribosomal L28 family NDN13_16935 PF00171 Aldehyde dehydrogenase family NDN13_16940 PF08360 QacR-like protein, C-terminal region NDN13_16940 PF00440 Bacterial regulatory proteins, tetR family NDN13_16945 PF01842 ACT domain NDN13_16945 PF00551 Formyl transferase NDN13_16955 PF01618 MotA/TolQ/ExbB proton channel family NDN13_16965 PF01625 Peptide methionine sulfoxide reductase NDN13_16980 PF00186 Dihydrofolate reductase NDN13_16985 PF00303 Thymidylate synthase NDN13_16990 PF09234 Domain of unknown function (DUF1963) NDN13_17015 PF07715 TonB-dependent Receptor Plug Domain NDN13_17015 PF00593 TonB dependent receptor NDN13_17025 PF02130 Uncharacterized protein family UPF0054 NDN13_17030 PF02562 PhoH-like protein NDN13_17035 PF00919 Uncharacterized protein family UPF0004 NDN13_17035 PF01938 TRAM domain NDN13_17035 PF04055 Radical SAM superfamily NDN13_17040 PF01464 Transglycosylase SLT domain NDN13_17040 PF10145 Phage-related minor tail protein NDN13_17040 PF01551 Peptidase family M23 NDN13_17050 PF00056 lactate/malate dehydrogenase, NAD binding domain NDN13_17050 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDN13_17070 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDN13_17075 PF01066 CDP-alcohol phosphatidyltransferase NDN13_17130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_17130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_17130 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_17145 PF13302 Acetyltransferase (GNAT) domain NDN13_17150 PF17932 Tetracyclin repressor-like, C-terminal domain NDN13_17150 PF00440 Bacterial regulatory proteins, tetR family NDN13_17170 PF01039 Carboxyl transferase domain NDN13_17175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_17175 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_17175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_17185 PF00289 Biotin carboxylase, N-terminal domain NDN13_17185 PF02785 Biotin carboxylase C-terminal domain NDN13_17185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_17185 PF00364 Biotin-requiring enzyme NDN13_17200 PF03372 Endonuclease/Exonuclease/phosphatase family NDN13_17230 PF04386 Stringent starvation protein B NDN13_17235 PF00043 Glutathione S-transferase, C-terminal domain NDN13_17235 PF02798 Glutathione S-transferase, N-terminal domain NDN13_17245 PF00380 Ribosomal protein S9/S16 NDN13_17250 PF00572 Ribosomal protein L13 NDN13_17265 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDN13_17270 PF00398 Ribosomal RNA adenine dimethylase NDN13_17275 PF00149 Calcineurin-like phosphoesterase NDN13_17280 PF00534 Glycosyl transferases group 1 NDN13_17280 PF13439 Glycosyltransferase Family 4 NDN13_17285 PF01569 PAP2 superfamily NDN13_17290 PF04384 Iron-sulphur cluster assembly NDN13_17295 PF00334 Nucleoside diphosphate kinase NDN13_17300 PF04055 Radical SAM superfamily NDN13_17315 PF04551 GcpE protein NDN13_17320 PF03129 Anticodon binding domain NDN13_17320 PF13393 Histidyl-tRNA synthetase NDN13_17330 PF01011 PQQ enzyme repeat NDN13_17330 PF13360 PQQ-like domain NDN13_17335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDN13_17335 PF01926 50S ribosome-binding GTPase NDN13_17350 PF00550 Phosphopantetheine attachment site NDN13_17355 PF00550 Phosphopantetheine attachment site NDN13_17370 PF00535 Glycosyl transferase family 2 NDN13_17380 PF00221 Aromatic amino acid lyase NDN13_17400 PF04820 Tryptophan halogenase NDN13_17410 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN13_17410 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN13_17425 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN13_17425 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN13_17440 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NDN13_17445 PF01177 Asp/Glu/Hydantoin racemase NDN13_17450 PF07549 SecD/SecF GG Motif NDN13_17450 PF02355 Protein export membrane protein NDN13_17455 PF13721 SecD export protein N-terminal TM region NDN13_17455 PF07549 SecD/SecF GG Motif NDN13_17455 PF02355 Protein export membrane protein NDN13_17460 PF02699 Preprotein translocase subunit NDN13_17465 PF01702 Queuine tRNA-ribosyltransferase NDN13_17480 PF02547 Queuosine biosynthesis protein NDN13_17495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_17495 PF00512 His Kinase A (phospho-acceptor) domain NDN13_17495 PF00989 PAS fold NDN13_17495 PF16736 Single Cache-like NDN13_17500 PF03710 Glutamate-ammonia ligase adenylyltransferase NDN13_17500 PF08335 GlnD PII-uridylyltransferase NDN13_17505 PF01063 Amino-transferase class IV NDN13_17510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN13_17510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN13_17520 PF17101 Stealth protein CR1, conserved region 1 NDN13_17520 PF11380 Stealth protein CR2, conserved region 2 NDN13_17520 PF17102 Stealth protein CR3, conserved region 3 NDN13_17520 PF17103 Stealth protein CR4, conserved region 4 NDN13_17550 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN13_17555 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN13_17560 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN13_17575 PF02938 GAD domain NDN13_17575 PF00152 tRNA synthetases class II (D, K and N) NDN13_17575 PF01336 OB-fold nucleic acid binding domain NDN13_17590 PF07715 TonB-dependent Receptor Plug Domain NDN13_17590 PF00593 TonB dependent receptor NDN13_17620 PF06146 Phosphate-starvation-inducible E NDN13_17625 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_17625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_17625 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN13_17625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_17630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN13_17630 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN13_17630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN13_17630 PF02770 Acyl-CoA dehydrogenase, middle domain NDN13_17640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_17640 PF00512 His Kinase A (phospho-acceptor) domain NDN13_17640 PF00672 HAMP domain NDN13_17645 PF00072 Response regulator receiver domain NDN13_17645 PF00486 Transcriptional regulatory protein, C terminal NDN13_17655 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDN13_17675 PF01923 Cobalamin adenosyltransferase NDN13_17680 PF07715 TonB-dependent Receptor Plug Domain NDN13_17680 PF00593 TonB dependent receptor NDN13_17685 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDN13_17690 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_17700 PF00149 Calcineurin-like phosphoesterase NDN13_17730 PF00290 Tryptophan synthase alpha chain NDN13_17735 PF01039 Carboxyl transferase domain NDN13_17740 PF08245 Mur ligase middle domain NDN13_17760 PF00753 Metallo-beta-lactamase superfamily NDN13_17765 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN13_17765 PF00578 AhpC/TSA family NDN13_17770 PF07516 SecA Wing and Scaffold domain NDN13_17770 PF01043 SecA preprotein cross-linking domain NDN13_17770 PF02810 SEC-C motif NDN13_17770 PF07517 SecA DEAD-like domain NDN13_17785 PF07690 Major Facilitator Superfamily NDN13_17785 PF00083 Sugar (and other) transporter NDN13_17790 PF03006 Haemolysin-III related NDN13_17820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN13_17820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN13_17820 PF00378 Enoyl-CoA hydratase/isomerase NDN13_17825 PF00108 Thiolase, N-terminal domain NDN13_17825 PF02803 Thiolase, C-terminal domain NDN13_17850 PF00583 Acetyltransferase (GNAT) family NDN13_17855 PF12833 Helix-turn-helix domain NDN13_17855 PF02311 AraC-like ligand binding domain NDN13_17860 PF02515 CoA-transferase family III NDN13_17865 PF04966 Carbohydrate-selective porin, OprB family NDN13_17870 PF01011 PQQ enzyme repeat NDN13_17875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN13_17875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN13_17890 PF00108 Thiolase, N-terminal domain NDN13_17890 PF02803 Thiolase, C-terminal domain NDN13_17900 PF00691 OmpA family NDN13_17900 PF13505 Outer membrane protein beta-barrel domain NDN13_17905 PF13505 Outer membrane protein beta-barrel domain NDN13_17905 PF00691 OmpA family NDN13_17915 PF01139 tRNA-splicing ligase RtcB NDN13_17920 PF00324 Amino acid permease NDN13_17925 PF05175 Methyltransferase small domain NDN13_17925 PF08468 Methyltransferase small domain N-terminal NDN13_17930 PF00860 Permease family NDN13_17935 PF00009 Elongation factor Tu GTP binding domain NDN13_17935 PF00679 Elongation factor G C-terminus NDN13_17935 PF03144 Elongation factor Tu domain 2 NDN13_17940 PF01741 Large-conductance mechanosensitive channel, MscL NDN13_17950 PF00639 PPIC-type PPIASE domain NDN13_17950 PF09312 SurA N-terminal domain NDN13_17955 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDN13_17955 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDN13_17955 PF06827 Zinc finger found in FPG and IleRS NDN13_17960 PF07715 TonB-dependent Receptor Plug Domain NDN13_17960 PF00593 TonB dependent receptor NDN13_17970 PF10411 Disulfide bond isomerase protein N-terminus NDN13_17970 PF13098 Thioredoxin-like domain NDN13_17985 PF01571 Aminomethyltransferase folate-binding domain NDN13_18000 PF04343 Protein of unknown function, DUF488 NDN13_18005 PF03831 PhnA domain NDN13_18005 PF08274 PhnA Zinc-Ribbon NDN13_18010 PF07411 Domain of unknown function (DUF1508) NDN13_18015 PF04073 Aminoacyl-tRNA editing domain NDN13_18015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN13_18015 PF03129 Anticodon binding domain NDN13_18025 PF00072 Response regulator receiver domain NDN13_18030 PF00072 Response regulator receiver domain NDN13_18035 PF01584 CheW-like domain NDN13_18040 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDN13_18040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDN13_18045 PF01584 CheW-like domain NDN13_18045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_18045 PF01627 Hpt domain NDN13_18045 PF00072 Response regulator receiver domain NDN13_18055 PF07687 Peptidase dimerisation domain NDN13_18055 PF01546 Peptidase family M20/M25/M40 NDN13_18060 PF08085 Entericidin EcnA/B family NDN13_18070 PF04304 Protein of unknown function (DUF454) NDN13_18075 PF17969 L,D-transpeptidase C-terminal domain NDN13_18075 PF03734 L,D-transpeptidase catalytic domain NDN13_18120 PF00175 Oxidoreductase NAD-binding domain NDN13_18120 PF00667 FAD binding domain NDN13_18120 PF00258 Flavodoxin NDN13_18130 PF12805 FUSC-like inner membrane protein yccS NDN13_18135 PF07690 Major Facilitator Superfamily NDN13_18140 PF00881 Nitroreductase family NDN13_18150 PF03616 Sodium/glutamate symporter NDN13_18155 PF01235 Sodium:alanine symporter family NDN13_18160 PF01734 Patatin-like phospholipase NDN13_18165 PF05992 SbmA/BacA-like family NDN13_18170 PF01431 Peptidase family M13 NDN13_18170 PF05649 Peptidase family M13 NDN13_18185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_18185 PF03466 LysR substrate binding domain NDN13_18220 PF02934 GatB/GatE catalytic domain NDN13_18220 PF02637 GatB domain NDN13_18225 PF01425 Amidase NDN13_18230 PF02686 Glu-tRNAGln amidotransferase C subunit NDN13_18240 PF04085 rod shape-determining protein MreC NDN13_18250 PF02545 Maf-like protein NDN13_18255 PF10150 Ribonuclease E/G family NDN13_18255 PF00575 S1 RNA binding domain NDN13_18265 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NDN13_18265 PF06974 Protein of unknown function (DUF1298) NDN13_18270 PF01507 Phosphoadenosine phosphosulfate reductase family NDN13_18290 PF03814 Potassium-transporting ATPase A subunit NDN13_18300 PF02669 K+-transporting ATPase, c chain NDN13_18305 PF02702 Osmosensitive K+ channel His kinase sensor domain NDN13_18305 PF13493 Domain of unknown function (DUF4118) NDN13_18305 PF13492 GAF domain NDN13_18305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_18305 PF00512 His Kinase A (phospho-acceptor) domain NDN13_18310 PF00486 Transcriptional regulatory protein, C terminal NDN13_18310 PF00072 Response regulator receiver domain NDN13_18315 PF00501 AMP-binding enzyme NDN13_18315 PF13193 AMP-binding enzyme C-terminal domain NDN13_18320 PF03783 Curli production assembly/transport component CsgG NDN13_18330 PF05643 Putative bacterial lipoprotein (DUF799) NDN13_18335 PF00171 Aldehyde dehydrogenase family NDN13_18340 PF12833 Helix-turn-helix domain NDN13_18340 PF02311 AraC-like ligand binding domain NDN13_18345 PF03600 Citrate transporter NDN13_18355 PF01569 PAP2 superfamily NDN13_18360 PF00120 Glutamine synthetase, catalytic domain NDN13_18370 PF00324 Amino acid permease NDN13_18375 PF04303 PrpF protein NDN13_18380 PF00348 Polyprenyl synthetase NDN13_18385 PF04237 YjbR NDN13_18390 PF01145 SPFH domain / Band 7 family NDN13_18400 PF01734 Patatin-like phospholipase NDN13_18420 PF00884 Sulfatase NDN13_18420 PF08019 Phosphoethanolamine transferase EptA/EptB NDN13_18425 PF00072 Response regulator receiver domain NDN13_18425 PF00486 Transcriptional regulatory protein, C terminal NDN13_18430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_18430 PF00512 His Kinase A (phospho-acceptor) domain NDN13_18430 PF08521 Two-component sensor kinase N-terminal NDN13_18445 PF00005 ABC transporter NDN13_18450 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_18455 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_18460 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN13_18465 PF00909 Ammonium Transporter Family NDN13_18470 PF02667 Short chain fatty acid transporter NDN13_18475 PF01144 Coenzyme A transferase NDN13_18480 PF01144 Coenzyme A transferase NDN13_18485 PF03466 LysR substrate binding domain NDN13_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_18515 PF04480 Protein of unknown function (DUF559) NDN13_18525 PF10458 Valyl tRNA synthetase tRNA binding arm NDN13_18525 PF08264 Anticodon-binding domain of tRNA NDN13_18525 PF00133 tRNA synthetases class I (I, L, M and V) NDN13_18550 PF07690 Major Facilitator Superfamily NDN13_18555 PF01906 Putative heavy-metal-binding NDN13_18560 PF01906 Putative heavy-metal-binding NDN13_18565 PF02321 Outer membrane efflux protein NDN13_18570 PF00873 AcrB/AcrD/AcrF family NDN13_18575 PF00529 HlyD membrane-fusion protein of T1SS NDN13_18575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN13_18580 PF01569 PAP2 superfamily NDN13_18590 PF00348 Polyprenyl synthetase NDN13_18595 PF00829 Ribosomal prokaryotic L21 protein NDN13_18600 PF01016 Ribosomal L27 protein NDN13_18605 PF02678 Pirin NDN13_18605 PF05726 Pirin C-terminal cupin domain NDN13_18610 PF03548 Outer membrane lipoprotein carrier protein LolA NDN13_18620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN13_18620 PF02403 Seryl-tRNA synthetase N-terminal domain NDN13_18625 PF14824 Sirohaem biosynthesis protein central NDN13_18625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN13_18625 PF10414 Sirohaem synthase dimerisation region NDN13_18630 PF00588 SpoU rRNA Methylase family NDN13_18640 PF01638 HxlR-like helix-turn-helix NDN13_18645 PF03358 NADPH-dependent FMN reductase NDN13_18660 PF13520 Amino acid permease NDN13_18665 PF00465 Iron-containing alcohol dehydrogenase NDN13_18675 PF03099 Biotin/lipoate A/B protein ligase family NDN13_18680 PF04359 Protein of unknown function (DUF493) NDN13_18685 PF04546 Sigma-70, non-essential region NDN13_18685 PF03979 Sigma-70 factor, region 1.1 NDN13_18685 PF00140 Sigma-70 factor, region 1.2 NDN13_18685 PF04542 Sigma-70 region 2 NDN13_18685 PF04545 Sigma-70, region 4 NDN13_18685 PF04539 Sigma-70 region 3 NDN13_18700 PF01810 LysE type translocator NDN13_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_18705 PF03466 LysR substrate binding domain NDN13_18710 PF09335 SNARE associated Golgi protein NDN13_18715 PF00581 Rhodanese-like domain NDN13_18715 PF17773 UPF0176 acylphosphatase like domain NDN13_18730 PF00285 Citrate synthase, C-terminal domain NDN13_18735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN13_18740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN13_18745 PF00890 FAD binding domain NDN13_18745 PF02910 Fumarate reductase flavoprotein C-term NDN13_18750 PF13085 2Fe-2S iron-sulfur cluster binding domain NDN13_18760 PF16078 2-oxoglutarate dehydrogenase N-terminus NDN13_18760 PF00676 Dehydrogenase E1 component NDN13_18760 PF16870 2-oxoglutarate dehydrogenase C-terminal NDN13_18760 PF02779 Transketolase, pyrimidine binding domain NDN13_18765 PF00364 Biotin-requiring enzyme NDN13_18765 PF02817 e3 binding domain NDN13_18765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN13_18770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN13_18770 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_18775 PF00549 CoA-ligase NDN13_18775 PF08442 ATP-grasp domain NDN13_18780 PF02629 CoA binding domain NDN13_18780 PF00549 CoA-ligase NDN13_18795 PF01145 SPFH domain / Band 7 family NDN13_18795 PF15975 Flotillin NDN13_18800 PF07290 Protein of unknown function (DUF1449) NDN13_18805 PF00579 tRNA synthetases class I (W and Y) NDN13_18810 PF05661 Protein of unknown function (DUF808) NDN13_18815 PF04228 Putative neutral zinc metallopeptidase NDN13_18820 PF00999 Sodium/hydrogen exchanger family NDN13_18835 PF09587 Bacterial capsule synthesis protein PGA_cap NDN13_18845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN13_18855 PF00582 Universal stress protein family NDN13_18860 PF00132 Bacterial transferase hexapeptide (six repeats) NDN13_18870 PF03449 Transcription elongation factor, N-terminal NDN13_18870 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN13_18875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN13_18875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NDN13_18875 PF02142 MGS-like domain NDN13_18880 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN13_18880 PF00117 Glutamine amidotransferase class-I NDN13_18895 PF01985 CRS1 / YhbY (CRM) domain NDN13_18900 PF01728 FtsJ-like methyltransferase NDN13_18905 PF01434 Peptidase family M41 NDN13_18905 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_18905 PF17862 AAA+ lid domain NDN13_18905 PF06480 FtsH Extracellular NDN13_18910 PF00809 Pterin binding enzyme NDN13_18920 PF12034 Domain of unknown function (DUF3520) NDN13_18920 PF00092 von Willebrand factor type A domain NDN13_18920 PF12450 von Willebrand factor NDN13_18925 PF00291 Pyridoxal-phosphate dependent enzyme NDN13_18925 PF13291 ACT domain NDN13_18935 PF00561 alpha/beta hydrolase fold NDN13_18945 PF04973 Nicotinamide mononucleotide transporter NDN13_18950 PF03009 Glycerophosphoryl diester phosphodiesterase family NDN13_18955 PF00884 Sulfatase NDN13_18960 PF00873 AcrB/AcrD/AcrF family NDN13_18965 PF00571 CBS domain NDN13_18965 PF01769 Divalent cation transporter NDN13_18965 PF03448 MgtE intracellular N domain NDN13_18975 PF01435 Peptidase family M48 NDN13_18980 PF01464 Transglycosylase SLT domain NDN13_18985 PF01171 PP-loop family NDN13_18995 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN13_18995 PF01464 Transglycosylase SLT domain NDN13_19000 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN13_19000 PF03449 Transcription elongation factor, N-terminal NDN13_19010 PF01810 LysE type translocator NDN13_19020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN13_19020 PF03466 LysR substrate binding domain NDN13_19040 PF03061 Thioesterase superfamily NDN13_19050 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN13_19050 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN13_19055 PF07152 YaeQ protein NDN13_19060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_19070 PF14883 Hypothetical glycosyl hydrolase family 13 NDN13_19070 PF01522 Polysaccharide deacetylase NDN13_19075 PF00535 Glycosyl transferase family 2 NDN13_19090 PF16655 PhoD-like phosphatase, N-terminal domain NDN13_19090 PF09423 PhoD-like phosphatase NDN13_19105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDN13_19105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDN13_19115 PF14542 GCN5-related N-acetyl-transferase NDN13_19125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDN13_19125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDN13_19130 PF00455 DeoR C terminal sensor domain NDN13_19130 PF08220 DeoR-like helix-turn-helix domain NDN13_19135 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDN13_19135 PF01266 FAD dependent oxidoreductase NDN13_19140 PF00593 TonB dependent receptor NDN13_19140 PF07660 Secretin and TonB N terminus short domain NDN13_19140 PF07715 TonB-dependent Receptor Plug Domain NDN13_19150 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NDN13_19150 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NDN13_19155 PF00781 Diacylglycerol kinase catalytic domain NDN13_19170 PF00166 Chaperonin 10 Kd subunit NDN13_19175 PF00118 TCP-1/cpn60 chaperonin family NDN13_19180 PF01219 Prokaryotic diacylglycerol kinase NDN13_19185 PF11890 Domain of unknown function (DUF3410) NDN13_19185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN13_19185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN13_19190 PF00152 tRNA synthetases class II (D, K and N) NDN13_19205 PF03781 Sulfatase-modifying factor enzyme 1 NDN13_19210 PF00884 Sulfatase NDN13_19220 PF01106 NifU-like domain NDN13_19220 PF01521 Iron-sulphur cluster biosynthesis NDN13_19225 PF07715 TonB-dependent Receptor Plug Domain NDN13_19225 PF00593 TonB dependent receptor NDN13_19235 PF00561 alpha/beta hydrolase fold NDN13_19240 PF00484 Carbonic anhydrase NDN13_19245 PF00583 Acetyltransferase (GNAT) family NDN13_19250 PF13472 GDSL-like Lipase/Acylhydrolase family NDN13_19255 PF00005 ABC transporter NDN13_19265 PF01694 Rhomboid family NDN13_19270 PF00912 Transglycosylase NDN13_19275 PF13089 Polyphosphate kinase N-terminal domain NDN13_19275 PF17941 Polyphosphate kinase C-terminal domain 1 NDN13_19275 PF13090 Polyphosphate kinase C-terminal domain 2 NDN13_19275 PF02503 Polyphosphate kinase middle domain NDN13_19280 PF03060 Nitronate monooxygenase NDN13_19320 PF03441 FAD binding domain of DNA photolyase NDN13_19320 PF00875 DNA photolyase NDN13_19325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN13_19330 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN13_19335 PF00768 D-alanyl-D-alanine carboxypeptidase NDN13_19335 PF07943 Penicillin-binding protein 5, C-terminal domain NDN13_19345 PF00576 HIUase/Transthyretin family NDN13_19355 PF00486 Transcriptional regulatory protein, C terminal NDN13_19355 PF00072 Response regulator receiver domain NDN13_19360 PF00672 HAMP domain NDN13_19360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN13_19360 PF00512 His Kinase A (phospho-acceptor) domain NDN13_19365 PF03971 Monomeric isocitrate dehydrogenase NDN13_19375 PF00849 RNA pseudouridylate synthase NDN13_19380 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN13_19405 PF01965 DJ-1/PfpI family NDN13_19410 PF02567 Phenazine biosynthesis-like protein NDN13_19415 PF00675 Insulinase (Peptidase family M16) NDN13_19415 PF05193 Peptidase M16 inactive domain NDN13_19430 PF01928 CYTH domain NDN13_19440 PF01867 CRISPR associated protein Cas1 NDN13_19450 PF09611 CRISPR-associated protein (Cas_Csy1) NDN13_19455 PF09614 CRISPR-associated protein (Cas_Csy2) NDN13_19460 PF09615 CRISPR-associated protein (Cas_Csy3) NDN13_19470 PF02581 Thiamine monophosphate synthase NDN13_19475 PF00202 Aminotransferase class-III NDN13_19480 PF03928 Haem-degrading NDN13_19485 PF00849 RNA pseudouridylate synthase NDN13_19490 PF18337 RapA N-terminal Tudor like domain NDN13_19490 PF18339 RapA N-terminal Tudor like domain 1 NDN13_19490 PF00176 SNF2 family N-terminal domain NDN13_19490 PF12137 RNA polymerase recycling family C-terminal NDN13_19490 PF00271 Helicase conserved C-terminal domain NDN13_19495 PF00210 Ferritin-like domain NDN13_19505 PF00440 Bacterial regulatory proteins, tetR family NDN13_19510 PF00175 Oxidoreductase NAD-binding domain NDN13_19510 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN13_19510 PF00970 Oxidoreductase FAD-binding domain NDN13_19515 PF00487 Fatty acid desaturase NDN13_19535 PF07715 TonB-dependent Receptor Plug Domain NDN13_19535 PF07660 Secretin and TonB N terminus short domain NDN13_19535 PF00593 TonB dependent receptor NDN13_19540 PF07715 TonB-dependent Receptor Plug Domain NDN13_19540 PF07660 Secretin and TonB N terminus short domain NDN13_19540 PF00593 TonB dependent receptor NDN13_19550 PF00202 Aminotransferase class-III NDN13_19555 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN13_19565 PF00171 Aldehyde dehydrogenase family NDN13_19570 PF01037 Lrp/AsnC ligand binding domain NDN13_19575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN13_19575 PF00205 Thiamine pyrophosphate enzyme, central domain NDN13_19575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN13_19580 PF00324 Amino acid permease NDN13_19590 PF12849 PBP superfamily domain NDN13_19595 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_19600 PF00528 Binding-protein-dependent transport system inner membrane component NDN13_19605 PF00005 ABC transporter NDN13_19610 PF01343 Peptidase family S49 NDN13_19610 PF08496 Peptidase family S49 N-terminal NDN13_19640 PF00905 Penicillin binding protein transpeptidase domain NDN13_19640 PF03717 Penicillin-binding Protein dimerisation domain NDN13_19655 PF05191 Adenylate kinase, active site lid NDN13_19665 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN13_19665 PF10576 Iron-sulfur binding domain of endonuclease III NDN13_19665 PF00633 Helix-hairpin-helix motif NDN13_19670 PF04060 Putative Fe-S cluster NDN13_19675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN13_19675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN13_19685 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN13_19690 PF02590 Predicted SPOUT methyltransferase NDN13_19695 PF00004 ATPase family associated with various cellular activities (AAA) NDN13_19695 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN13_19695 PF02190 ATP-dependent protease La (LON) substrate-binding domain NDN13_19700 PF01812 5-formyltetrahydrofolate cyclo-ligase family NDN13_19705 PF13018 Extended Signal Peptide of Type V secretion system NDN13_19705 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_19705 PF05658 Head domain of trimeric autotransporter adhesin NDN13_19705 PF03895 YadA-like membrane anchor domain NDN13_19710 PF00691 OmpA family NDN13_19710 PF04355 SmpA / OmlA family NDN13_19715 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_19715 PF05658 Head domain of trimeric autotransporter adhesin NDN13_19715 PF03895 YadA-like membrane anchor domain NDN13_19715 PF13018 Extended Signal Peptide of Type V secretion system NDN13_19735 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN13_19735 PF05658 Head domain of trimeric autotransporter adhesin NDN13_19735 PF03895 YadA-like membrane anchor domain NDN13_19735 PF13018 Extended Signal Peptide of Type V secretion system NDN13_19780 PF12441 CopG antitoxin of type II toxin-antitoxin system