locus-tag class description JFY49_00005 PF00308 Bacterial dnaA protein JFY49_00005 PF08299 Bacterial dnaA protein helix-turn-helix JFY49_00005 PF11638 DnaA N-terminal domain JFY49_00010 PF02767 DNA polymerase III beta subunit, central domain JFY49_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JFY49_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JFY49_00015 PF02463 RecF/RecN/SMC N terminal domain JFY49_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_00020 PF18053 DNA gyrase B subunit insert domain JFY49_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JFY49_00020 PF00204 DNA gyrase B JFY49_00020 PF01751 Toprim domain JFY49_00030 PF00005 ABC transporter JFY49_00030 PF12848 ABC transporter JFY49_00050 PF01521 Iron-sulphur cluster biosynthesis JFY49_00065 PF00012 Hsp70 protein JFY49_00070 PF01025 GrpE JFY49_00075 PF12323 Helix-turn-helix domain JFY49_00075 PF01385 Probable transposase JFY49_00075 PF07282 Putative transposase DNA-binding domain JFY49_00080 PF07859 alpha/beta hydrolase fold JFY49_00090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JFY49_00095 PF13613 Helix-turn-helix of DDE superfamily endonuclease JFY49_00095 PF13359 DDE superfamily endonuclease JFY49_00140 PF00209 Sodium:neurotransmitter symporter family JFY49_00150 PF01029 NusB family JFY49_00150 PF01189 16S rRNA methyltransferase RsmB/F JFY49_00155 PF00551 Formyl transferase JFY49_00155 PF02911 Formyl transferase, C-terminal domain JFY49_00160 PF00920 Dehydratase family JFY49_00165 PF00920 Dehydratase family JFY49_00180 PF07282 Putative transposase DNA-binding domain JFY49_00180 PF12323 Helix-turn-helix domain JFY49_00180 PF01385 Probable transposase JFY49_00190 PF00145 C-5 cytosine-specific DNA methylase JFY49_00190 PF13411 MerR HTH family regulatory protein JFY49_00205 PF00860 Permease family JFY49_00210 PF00311 Phosphoenolpyruvate carboxylase JFY49_00215 PF08361 MAATS-type transcriptional repressor, C-terminal region JFY49_00215 PF00440 Bacterial regulatory proteins, tetR family JFY49_00220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_00225 PF00873 AcrB/AcrD/AcrF family JFY49_00235 PF00684 DnaJ central domain JFY49_00235 PF00226 DnaJ domain JFY49_00235 PF01556 DnaJ C terminal domain JFY49_00245 PF01113 Dihydrodipicolinate reductase, N-terminus JFY49_00245 PF05173 Dihydrodipicolinate reductase, C-terminus JFY49_00265 PF00107 Zinc-binding dehydrogenase JFY49_00265 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_00270 PF03352 Methyladenine glycosylase JFY49_00285 PF10576 Iron-sulfur binding domain of endonuclease III JFY49_00285 PF14815 NUDIX domain JFY49_00285 PF00633 Helix-hairpin-helix motif JFY49_00285 PF00730 HhH-GPD superfamily base excision DNA repair protein JFY49_00300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JFY49_00300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_00305 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JFY49_00305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_00310 PF02706 Chain length determinant protein JFY49_00310 PF13807 G-rich domain on putative tyrosine kinase JFY49_00310 PF13614 AAA domain JFY49_00315 PF01451 Low molecular weight phosphotyrosine protein phosphatase JFY49_00320 PF02563 Polysaccharide biosynthesis/export protein JFY49_00320 PF10531 SLBB domain JFY49_00320 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JFY49_00325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JFY49_00325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JFY49_00325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JFY49_00330 PF01370 NAD dependent epimerase/dehydratase family JFY49_00340 PF12464 Maltose acetyltransferase JFY49_00340 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_00345 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_00350 PF13439 Glycosyltransferase Family 4 JFY49_00350 PF00534 Glycosyl transferases group 1 JFY49_00355 PF00534 Glycosyl transferases group 1 JFY49_00355 PF13439 Glycosyltransferase Family 4 JFY49_00360 PF13477 Glycosyl transferase 4-like JFY49_00360 PF00534 Glycosyl transferases group 1 JFY49_00365 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_00365 PF14602 Hexapeptide repeat of succinyl-transferase JFY49_00365 PF12804 MobA-like NTP transferase domain JFY49_00370 PF02397 Bacterial sugar transferase JFY49_00375 PF14602 Hexapeptide repeat of succinyl-transferase JFY49_00375 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_00375 PF17836 PglD N-terminal domain JFY49_00380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JFY49_00385 PF02719 Polysaccharide biosynthesis protein JFY49_00395 PF01501 Glycosyl transferase family 8 JFY49_00395 PF00535 Glycosyl transferase family 2 JFY49_00400 PF00534 Glycosyl transferases group 1 JFY49_00410 PF00534 Glycosyl transferases group 1 JFY49_00410 PF13439 Glycosyltransferase Family 4 JFY49_00415 PF13477 Glycosyl transferase 4-like JFY49_00415 PF00534 Glycosyl transferases group 1 JFY49_00420 PF02397 Bacterial sugar transferase JFY49_00425 PF00483 Nucleotidyl transferase JFY49_00430 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JFY49_00430 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JFY49_00430 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JFY49_00435 PF00342 Phosphoglucose isomerase JFY49_00440 PF16363 GDP-mannose 4,6 dehydratase JFY49_00445 PF14052 Capsule assembly protein Wzi JFY49_00450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JFY49_00450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JFY49_00450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JFY49_00450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JFY49_00470 PF15978 Tn7-like transposition protein D JFY49_00470 PF06527 TniQ JFY49_00475 PF13401 AAA domain JFY49_00475 PF11426 Tn7 transposition regulator TnsC JFY49_00480 PF00665 Integrase core domain JFY49_00500 PF01380 SIS domain JFY49_00505 PF14602 Hexapeptide repeat of succinyl-transferase JFY49_00505 PF12804 MobA-like NTP transferase domain JFY49_00505 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_00510 PF04608 Phosphatidylglycerophosphatase A JFY49_00515 PF02769 AIR synthase related protein, C-terminal domain JFY49_00515 PF00586 AIR synthase related protein, N-terminal domain JFY49_00520 PF01029 NusB family JFY49_00525 PF00885 6,7-dimethyl-8-ribityllumazine synthase JFY49_00530 PF00925 GTP cyclohydrolase II JFY49_00530 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JFY49_00535 PF09905 DNA-binding protein VF530 JFY49_00565 PF12419 SNF2 Helicase protein JFY49_00565 PF00271 Helicase conserved C-terminal domain JFY49_00565 PF00176 SNF2 family N-terminal domain JFY49_00570 PF13657 HipA N-terminal domain JFY49_00570 PF07804 HipA-like C-terminal domain JFY49_00660 PF03895 YadA-like membrane anchor domain JFY49_00660 PF05658 Head domain of trimeric autotransporter adhesin JFY49_00660 PF05662 Coiled stalk of trimeric autotransporter adhesin JFY49_00660 PF13018 Extended Signal Peptide of Type V secretion system JFY49_00660 PF03895 YadA-like membrane anchor domain JFY49_00660 PF05658 Head domain of trimeric autotransporter adhesin JFY49_00660 PF05662 Coiled stalk of trimeric autotransporter adhesin JFY49_00660 PF13018 Extended Signal Peptide of Type V secretion system JFY49_00665 PF04355 SmpA / OmlA family JFY49_00665 PF00691 OmpA family JFY49_00690 PF07120 Protein of unknown function (DUF1376) JFY49_00725 PF01722 BolA-like protein JFY49_00735 PF13614 AAA domain JFY49_00750 PF09335 SNARE associated Golgi protein JFY49_00765 PF02540 NAD synthase JFY49_00765 PF00117 Glutamine amidotransferase class-I JFY49_00765 PF00958 GMP synthase C terminal domain JFY49_00770 PF00990 Diguanylate cyclase, GGDEF domain JFY49_00770 PF00072 Response regulator receiver domain JFY49_00795 PF02678 Pirin JFY49_00795 PF05726 Pirin C-terminal cupin domain JFY49_00815 PF13018 Extended Signal Peptide of Type V secretion system JFY49_00815 PF13332 Hemagglutinin repeat JFY49_00815 PF05860 haemagglutination activity domain JFY49_00815 PF04829 Pre-toxin domain with VENN motif JFY49_00820 PF17287 POTRA domain JFY49_00820 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB JFY49_00820 PF08479 POTRA domain, ShlB-type JFY49_00830 PF00665 Integrase core domain JFY49_00835 PF01695 IstB-like ATP binding protein JFY49_00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_00845 PF00989 PAS fold JFY49_00845 PF00512 His Kinase A (phospho-acceptor) domain JFY49_00845 PF11808 Phosphate regulon sensor protein PhoR JFY49_00850 PF00072 Response regulator receiver domain JFY49_00850 PF00486 Transcriptional regulatory protein, C terminal JFY49_00860 PF00106 short chain dehydrogenase JFY49_00895 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_00905 PF00005 ABC transporter JFY49_00910 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_00915 PF00158 Sigma-54 interaction domain JFY49_00925 PF00005 ABC transporter JFY49_00930 PF00296 Luciferase-like monooxygenase JFY49_00935 PF00296 Luciferase-like monooxygenase JFY49_00940 PF01554 MatE JFY49_00945 PF00155 Aminotransferase class I and II JFY49_00950 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JFY49_00950 PF04717 Type VI secretion system, phage-baseplate injector JFY49_00950 PF13296 Putative type VI secretion system Rhs element Vgr JFY49_00955 PF13737 Transposase DDE domain JFY49_00960 PF04261 Dyp-type peroxidase family JFY49_00965 PF01810 LysE type translocator JFY49_00975 PF04463 Protein of unknown function (DUF523) JFY49_00980 PF00950 ABC 3 transport family JFY49_00985 PF00005 ABC transporter JFY49_01005 PF00119 ATP synthase A chain JFY49_01010 PF00137 ATP synthase subunit C JFY49_01015 PF00430 ATP synthase B/B' CF(0) JFY49_01020 PF00213 ATP synthase delta (OSCP) subunit JFY49_01025 PF02874 ATP synthase alpha/beta family, beta-barrel domain JFY49_01025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JFY49_01025 PF00306 ATP synthase alpha/beta chain, C terminal domain JFY49_01030 PF00231 ATP synthase JFY49_01035 PF02874 ATP synthase alpha/beta family, beta-barrel domain JFY49_01035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JFY49_01040 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JFY49_01055 PF00107 Zinc-binding dehydrogenase JFY49_01055 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_01070 PF00255 Glutathione peroxidase JFY49_01085 PF00892 EamA-like transporter family JFY49_01090 PF01300 Telomere recombination JFY49_01095 PF17782 DprA winged helix domain JFY49_01095 PF02481 DNA recombination-mediator protein A JFY49_01105 PF01327 Polypeptide deformylase JFY49_01145 PF08497 Radical SAM N-terminal JFY49_01145 PF11842 Domain of unknown function (DUF3362) JFY49_01145 PF04055 Radical SAM superfamily JFY49_01170 PF11799 impB/mucB/samB family C-terminal domain JFY49_01170 PF11798 IMS family HHH motif JFY49_01170 PF00817 impB/mucB/samB family JFY49_01185 PF07690 Major Facilitator Superfamily JFY49_01190 PF03641 Possible lysine decarboxylase JFY49_01195 PF03741 Integral membrane protein TerC family JFY49_01195 PF03471 Transporter associated domain JFY49_01200 PF02810 SEC-C motif JFY49_01205 PF03458 UPF0126 domain JFY49_01215 PF07690 Major Facilitator Superfamily JFY49_01220 PF00521 DNA gyrase/topoisomerase IV, subunit A JFY49_01220 PF03989 DNA gyrase C-terminal domain, beta-propeller JFY49_01225 PF00501 AMP-binding enzyme JFY49_01225 PF13193 AMP-binding enzyme C-terminal domain JFY49_01240 PF00719 Inorganic pyrophosphatase JFY49_01245 PF03573 outer membrane porin, OprD family JFY49_01260 PF13335 Magnesium chelatase, subunit ChlI C-terminal JFY49_01260 PF01078 Magnesium chelatase, subunit ChlI JFY49_01270 PF00665 Integrase core domain JFY49_01305 PF13005 zinc-finger binding domain of transposase IS66 JFY49_01305 PF03050 Transposase IS66 family JFY49_01305 PF13007 Transposase C of IS166 homeodomain JFY49_01305 PF13817 IS66 C-terminal element JFY49_01315 PF13005 zinc-finger binding domain of transposase IS66 JFY49_01315 PF13007 Transposase C of IS166 homeodomain JFY49_01315 PF13817 IS66 C-terminal element JFY49_01315 PF03050 Transposase IS66 family JFY49_01340 PF14461 Prokaryotic E2 family B JFY49_01340 PF00899 ThiF family JFY49_01365 PF01078 Magnesium chelatase, subunit ChlI JFY49_01365 PF13335 Magnesium chelatase, subunit ChlI C-terminal JFY49_01375 PF00543 Nitrogen regulatory protein P-II JFY49_01380 PF00909 Ammonium Transporter Family JFY49_01385 PF03477 ATP cone domain JFY49_01390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JFY49_01390 PF01872 RibD C-terminal domain JFY49_01400 PF00677 Lumazine binding domain JFY49_01405 PF09335 SNARE associated Golgi protein JFY49_01420 PF02789 Cytosol aminopeptidase family, N-terminal domain JFY49_01420 PF00883 Cytosol aminopeptidase family, catalytic domain JFY49_01425 PF03739 Lipopolysaccharide export system permease LptF/LptG JFY49_01430 PF03739 Lipopolysaccharide export system permease LptF/LptG JFY49_01435 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JFY49_01435 PF01676 Metalloenzyme superfamily JFY49_01440 PF03572 Peptidase family S41 JFY49_01440 PF00595 PDZ domain JFY49_01455 PF00158 Sigma-54 interaction domain JFY49_01455 PF00072 Response regulator receiver domain JFY49_01455 PF02954 Bacterial regulatory protein, Fis family JFY49_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_01460 PF00512 His Kinase A (phospho-acceptor) domain JFY49_01465 PF00072 Response regulator receiver domain JFY49_01465 PF00196 Bacterial regulatory proteins, luxR family JFY49_01470 PF00768 D-alanyl-D-alanine carboxypeptidase JFY49_01475 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_01480 PF03447 Homoserine dehydrogenase, NAD binding domain JFY49_01480 PF01842 ACT domain JFY49_01480 PF00742 Homoserine dehydrogenase JFY49_01485 PF10411 Disulfide bond isomerase protein N-terminus JFY49_01485 PF13098 Thioredoxin-like domain JFY49_01490 PF02899 Phage integrase, N-terminal SAM-like domain JFY49_01490 PF00589 Phage integrase family JFY49_01500 PF07670 Nucleoside recognition JFY49_01500 PF02421 Ferrous iron transport protein B JFY49_01500 PF07664 Ferrous iron transport protein B C terminus JFY49_01510 PF08245 Mur ligase middle domain JFY49_01510 PF02875 Mur ligase family, glutamate ligase domain JFY49_01515 PF01098 Cell cycle protein JFY49_01520 PF00749 tRNA synthetases class I (E and Q), catalytic domain JFY49_01525 PF01258 Prokaryotic dksA/traR C4-type zinc finger JFY49_01530 PF00149 Calcineurin-like phosphoesterase JFY49_01535 PF00293 NUDIX domain JFY49_01540 PF13667 ThiC-associated domain JFY49_01540 PF01964 Radical SAM ThiC family JFY49_01555 PF01895 PhoU domain JFY49_01575 PF04632 Fusaric acid resistance protein family JFY49_01585 PF13533 Biotin-lipoyl like JFY49_01590 PF03652 Holliday junction resolvase JFY49_01595 PF02622 Uncharacterized ACR, COG1678 JFY49_01600 PF02463 RecF/RecN/SMC N terminal domain JFY49_01605 PF06865 Pyrimidine/purine nucleoside phosphorylase JFY49_01610 PF00588 SpoU rRNA Methylase family JFY49_01610 PF08032 RNA 2'-O ribose methyltransferase substrate binding JFY49_01620 PF01121 Dephospho-CoA kinase JFY49_01625 PF06750 Bacterial Peptidase A24 N-terminal domain JFY49_01625 PF01478 Type IV leader peptidase family JFY49_01630 PF00482 Type II secretion system (T2SS), protein F JFY49_01635 PF00437 Type II/IV secretion system protein JFY49_01635 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JFY49_01640 PF00121 Triosephosphate isomerase JFY49_01645 PF03840 Preprotein translocase SecG subunit JFY49_01675 PF02576 RimP N-terminal domain JFY49_01675 PF17384 RimP C-terminal SH3 domain JFY49_01680 PF13184 NusA-like KH domain JFY49_01680 PF00575 S1 RNA binding domain JFY49_01680 PF08529 NusA N-terminal domain JFY49_01685 PF04760 Translation initiation factor IF-2, N-terminal region JFY49_01685 PF11987 Translation-initiation factor 2 JFY49_01685 PF08364 Bacterial translation initiation factor IF-2 associated region JFY49_01685 PF00009 Elongation factor Tu GTP binding domain JFY49_01690 PF02033 Ribosome-binding factor A JFY49_01695 PF03334 Na+/H+ antiporter subunit JFY49_01700 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JFY49_01710 PF00361 Proton-conducting membrane transporter JFY49_01715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JFY49_01720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JFY49_01720 PF00361 Proton-conducting membrane transporter JFY49_01720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JFY49_01720 PF13244 Domain of unknown function (DUF4040) JFY49_01735 PF01502 Phosphoribosyl-AMP cyclohydrolase JFY49_01760 PF03109 ABC1 family JFY49_01770 PF01209 ubiE/COQ5 methyltransferase family JFY49_01780 PF03976 Polyphosphate kinase 2 (PPK2) JFY49_01790 PF17946 RecC C-terminal domain JFY49_01795 PF00580 UvrD/REP helicase N-terminal domain JFY49_01795 PF13361 UvrD-like helicase C-terminal domain JFY49_01795 PF12705 PD-(D/E)XK nuclease superfamily JFY49_01800 PF13538 UvrD-like helicase C-terminal domain JFY49_01805 PF00312 Ribosomal protein S15 JFY49_01810 PF00575 S1 RNA binding domain JFY49_01810 PF03725 3' exoribonuclease family, domain 2 JFY49_01810 PF01138 3' exoribonuclease family, domain 1 JFY49_01810 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JFY49_01810 PF00013 KH domain JFY49_01815 PF01544 CorA-like Mg2+ transporter protein JFY49_01830 PF00226 DnaJ domain JFY49_01830 PF01556 DnaJ C terminal domain JFY49_01845 PF01430 Hsp33 protein JFY49_01850 PF02254 TrkA-N domain JFY49_01850 PF00999 Sodium/hydrogen exchanger family JFY49_01855 PF00270 DEAD/DEAH box helicase JFY49_01855 PF00271 Helicase conserved C-terminal domain JFY49_01855 PF17764 3′ DNA-binding domain (3′BD) JFY49_01855 PF18074 Primosomal protein N C-terminal domain JFY49_01855 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JFY49_01860 PF00482 Type II secretion system (T2SS), protein F JFY49_01865 PF07963 Prokaryotic N-terminal methylation motif JFY49_01865 PF08334 Type II secretion system (T2SS), protein G JFY49_01875 PF00795 Carbon-nitrogen hydrolase JFY49_01880 PF03471 Transporter associated domain JFY49_01880 PF00571 CBS domain JFY49_01885 PF01206 Sulfurtransferase TusA JFY49_01900 PF01177 Asp/Glu/Hydantoin racemase JFY49_01910 PF00762 Ferrochelatase JFY49_01915 PF00753 Metallo-beta-lactamase superfamily JFY49_01925 PF03884 DNA gyrase inhibitor YacG JFY49_01935 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_01935 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JFY49_01960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JFY49_01960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JFY49_01985 PF05746 DALR anticodon binding domain JFY49_01985 PF02092 Glycyl-tRNA synthetase beta subunit JFY49_01990 PF02091 Glycyl-tRNA synthetase alpha subunit JFY49_01995 PF00571 CBS domain JFY49_02000 PF04024 PspC domain JFY49_02035 PF00501 AMP-binding enzyme JFY49_02035 PF13193 AMP-binding enzyme C-terminal domain JFY49_02040 PF10150 Ribonuclease E/G family JFY49_02040 PF12111 Polyribonucleotide phosphorylase C terminal JFY49_02040 PF00575 S1 RNA binding domain JFY49_02045 PF00849 RNA pseudouridylate synthase JFY49_02045 PF01479 S4 domain JFY49_02050 PF13419 Haloacid dehalogenase-like hydrolase JFY49_02060 PF01557 Fumarylacetoacetate (FAA) hydrolase family JFY49_02065 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation JFY49_02065 PF01118 Semialdehyde dehydrogenase, NAD binding domain JFY49_02070 PF00682 HMGL-like JFY49_02070 PF07836 DmpG-like communication domain JFY49_02075 PF03573 outer membrane porin, OprD family JFY49_02080 PF00561 alpha/beta hydrolase fold JFY49_02095 PF03466 LysR substrate binding domain JFY49_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_02100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JFY49_02100 PF00355 Rieske [2Fe-2S] domain JFY49_02105 PF00866 Ring hydroxylating beta subunit JFY49_02110 PF00355 Rieske [2Fe-2S] domain JFY49_02115 PF00106 short chain dehydrogenase JFY49_02120 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JFY49_02125 PF14759 Reductase C-terminal JFY49_02125 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_02135 PF01545 Cation efflux family JFY49_02135 PF16916 Dimerisation domain of Zinc Transporter JFY49_02140 PF12706 Beta-lactamase superfamily domain JFY49_02150 PF00141 Peroxidase JFY49_02155 PF13936 Helix-turn-helix domain JFY49_02155 PF00665 Integrase core domain JFY49_02170 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_02170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_02170 PF18158 Adaptive response protein AidB N-terminal domain JFY49_02185 PF02896 PEP-utilising enzyme, TIM barrel domain JFY49_02185 PF01590 GAF domain JFY49_02185 PF00391 PEP-utilising enzyme, mobile domain JFY49_02185 PF05524 PEP-utilising enzyme, N-terminal JFY49_02190 PF00293 NUDIX domain JFY49_02210 PF03466 LysR substrate binding domain JFY49_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_02225 PF00330 Aconitase family (aconitate hydratase) JFY49_02230 PF00694 Aconitase C-terminal domain JFY49_02240 PF00180 Isocitrate/isopropylmalate dehydrogenase JFY49_02250 PF13340 Putative transposase of IS4/5 family (DUF4096) JFY49_02270 PF01176 Translation initiation factor 1A / IF-1 JFY49_02280 PF01416 tRNA pseudouridine synthase JFY49_02285 PF17763 Glutaminase/Asparaginase C-terminal domain JFY49_02285 PF00710 Asparaginase, N-terminal JFY49_02300 PF02774 Semialdehyde dehydrogenase, dimerisation domain JFY49_02300 PF01118 Semialdehyde dehydrogenase, NAD binding domain JFY49_02320 PF03279 Bacterial lipid A biosynthesis acyltransferase JFY49_02325 PF00005 ABC transporter JFY49_02325 PF12848 ABC transporter JFY49_02325 PF16326 ABC transporter C-terminal domain JFY49_02330 PF04102 SlyX JFY49_02345 PF01396 Topoisomerase DNA binding C4 zinc finger JFY49_02345 PF01751 Toprim domain JFY49_02345 PF01131 DNA topoisomerase JFY49_02345 PF08272 Topoisomerase I zinc-ribbon-like JFY49_02365 PF02595 Glycerate kinase family JFY49_02370 PF13361 UvrD-like helicase C-terminal domain JFY49_02370 PF00580 UvrD/REP helicase N-terminal domain JFY49_02390 PF00999 Sodium/hydrogen exchanger family JFY49_02390 PF02254 TrkA-N domain JFY49_02395 PF00471 Ribosomal protein L33 JFY49_02400 PF00830 Ribosomal L28 family JFY49_02405 PF00171 Aldehyde dehydrogenase family JFY49_02410 PF00440 Bacterial regulatory proteins, tetR family JFY49_02410 PF08360 QacR-like protein, C-terminal region JFY49_02415 PF00551 Formyl transferase JFY49_02415 PF01842 ACT domain JFY49_02425 PF01618 MotA/TolQ/ExbB proton channel family JFY49_02435 PF01625 Peptide methionine sulfoxide reductase JFY49_02450 PF00186 Dihydrofolate reductase JFY49_02455 PF00303 Thymidylate synthase JFY49_02470 PF02321 Outer membrane efflux protein JFY49_02475 PF00005 ABC transporter JFY49_02475 PF12704 MacB-like periplasmic core domain JFY49_02475 PF02687 FtsX-like permease family JFY49_02480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_02485 PF01814 Hemerythrin HHE cation binding domain JFY49_02500 PF00133 tRNA synthetases class I (I, L, M and V) JFY49_02500 PF13603 Leucyl-tRNA synthetase, Domain 2 JFY49_02500 PF08264 Anticodon-binding domain of tRNA JFY49_02500 PF09334 tRNA synthetases class I (M) JFY49_02510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JFY49_02510 PF00205 Thiamine pyrophosphate enzyme, central domain JFY49_02510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JFY49_02515 PF10369 Small subunit of acetolactate synthase JFY49_02520 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JFY49_02520 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JFY49_02545 PF13332 Hemagglutinin repeat JFY49_02545 PF05860 haemagglutination activity domain JFY49_02545 PF04829 Pre-toxin domain with VENN motif JFY49_02545 PF13018 Extended Signal Peptide of Type V secretion system JFY49_02550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB JFY49_02550 PF17287 POTRA domain JFY49_02550 PF08479 POTRA domain, ShlB-type JFY49_02560 PF00665 Integrase core domain JFY49_02565 PF01695 IstB-like ATP binding protein JFY49_02590 PF13439 Glycosyltransferase Family 4 JFY49_02590 PF00534 Glycosyl transferases group 1 JFY49_02595 PF01569 PAP2 superfamily JFY49_02600 PF04384 Iron-sulphur cluster assembly JFY49_02605 PF00334 Nucleoside diphosphate kinase JFY49_02610 PF04055 Radical SAM superfamily JFY49_02620 PF13464 Domain of unknown function (DUF4115) JFY49_02625 PF04551 GcpE protein JFY49_02630 PF13393 Histidyl-tRNA synthetase JFY49_02630 PF03129 Anticodon binding domain JFY49_02640 PF01011 PQQ enzyme repeat JFY49_02640 PF13360 PQQ-like domain JFY49_02645 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JFY49_02645 PF01926 50S ribosome-binding GTPase JFY49_02660 PF03819 MazG nucleotide pyrophosphohydrolase domain JFY49_02670 PF01743 Poly A polymerase head domain JFY49_02670 PF12626 Polymerase A arginine-rich C-terminus JFY49_02670 PF12627 Probable RNA and SrmB- binding site of polymerase A JFY49_02675 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JFY49_02680 PF02548 Ketopantoate hydroxymethyltransferase JFY49_02685 PF02569 Pantoate-beta-alanine ligase JFY49_02690 PF03668 P-loop ATPase protein family JFY49_02695 PF00381 PTS HPr component phosphorylation site JFY49_02700 PF04751 Protein of unknown function (DUF615) JFY49_02705 PF00501 AMP-binding enzyme JFY49_02705 PF13193 AMP-binding enzyme C-terminal domain JFY49_02710 PF03129 Anticodon binding domain JFY49_02710 PF02824 TGS domain JFY49_02710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JFY49_02710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JFY49_02715 PF05198 Translation initiation factor IF-3, N-terminal domain JFY49_02715 PF00707 Translation initiation factor IF-3, C-terminal domain JFY49_02720 PF00011 Hsp20/alpha crystallin family JFY49_02725 PF02798 Glutathione S-transferase, N-terminal domain JFY49_02725 PF00043 Glutathione S-transferase, C-terminal domain JFY49_02735 PF09335 SNARE associated Golgi protein JFY49_02745 PF07690 Major Facilitator Superfamily JFY49_02750 PF01632 Ribosomal protein L35 JFY49_02755 PF00453 Ribosomal protein L20 JFY49_02770 PF01790 Prolipoprotein diacylglyceryl transferase JFY49_02785 PF00902 Sec-independent protein translocase protein (TatC) JFY49_02790 PF02416 mttA/Hcf106 family JFY49_02795 PF02416 mttA/Hcf106 family JFY49_02805 PF01725 Ham1 family JFY49_02820 PF07021 Methionine biosynthesis protein MetW JFY49_02820 PF00561 alpha/beta hydrolase fold JFY49_02825 PF00561 alpha/beta hydrolase fold JFY49_02830 PF00682 HMGL-like JFY49_02830 PF08502 LeuA allosteric (dimerisation) domain JFY49_02835 PF01070 FMN-dependent dehydrogenase JFY49_02840 PF13640 2OG-Fe(II) oxygenase superfamily JFY49_02840 PF18331 PKHD-type hydroxylase C-terminal domain JFY49_02850 PF00593 TonB dependent receptor JFY49_02850 PF07715 TonB-dependent Receptor Plug Domain JFY49_02855 PF18331 PKHD-type hydroxylase C-terminal domain JFY49_02855 PF13640 2OG-Fe(II) oxygenase superfamily JFY49_02860 PF07715 TonB-dependent Receptor Plug Domain JFY49_02860 PF00593 TonB dependent receptor JFY49_02865 PF05697 Bacterial trigger factor protein (TF) JFY49_02865 PF05698 Bacterial trigger factor protein (TF) C-terminus JFY49_02865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_02870 PF00574 Clp protease JFY49_02895 PF05681 Fumarate hydratase (Fumerase) JFY49_02895 PF05683 Fumarase C-terminus JFY49_02900 PF08241 Methyltransferase domain JFY49_02905 PF07085 DRTGG domain JFY49_02905 PF01515 Phosphate acetyl/butaryl transferase JFY49_02910 PF00871 Acetokinase family JFY49_02920 PF00171 Aldehyde dehydrogenase family JFY49_02935 PF00933 Glycosyl hydrolase family 3 N terminal domain JFY49_02940 PF17804 Tail specific protease N-terminal domain JFY49_02940 PF03572 Peptidase family S41 JFY49_02940 PF00595 PDZ domain JFY49_02940 PF11818 C-terminal domain of tail specific protease (DUF3340) JFY49_02945 PF03707 Bacterial signalling protein N terminal repeat JFY49_02945 PF00990 Diguanylate cyclase, GGDEF domain JFY49_02945 PF00563 EAL domain JFY49_02950 PF03212 Pertactin JFY49_02950 PF16168 Adhesin of bacterial autotransporter system, probable stalk JFY49_02950 PF03797 Autotransporter beta-domain JFY49_02950 PF13018 Extended Signal Peptide of Type V secretion system JFY49_02955 PF01389 OmpA-like transmembrane domain JFY49_02955 PF00691 OmpA family JFY49_02960 PF00009 Elongation factor Tu GTP binding domain JFY49_02960 PF16658 Class II release factor RF3, C-terminal domain JFY49_02960 PF03144 Elongation factor Tu domain 2 JFY49_02975 PF01026 TatD related DNase JFY49_02995 PF02556 Preprotein translocase subunit SecB JFY49_03000 PF00462 Glutaredoxin JFY49_03010 PF03193 RsgA GTPase JFY49_03015 PF00929 Exonuclease JFY49_03020 PF00899 ThiF family JFY49_03030 PF01409 tRNA synthetases class II core domain (F) JFY49_03030 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JFY49_03035 PF03484 tRNA synthetase B5 domain JFY49_03035 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JFY49_03035 PF03147 Ferredoxin-fold anticodon binding domain JFY49_03035 PF03483 B3/4 domain JFY49_03035 PF01588 Putative tRNA binding domain JFY49_03040 PF00216 Bacterial DNA-binding protein JFY49_03050 PF07498 Rho termination factor, N-terminal domain JFY49_03050 PF07497 Rho termination factor, RNA-binding domain JFY49_03050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JFY49_03055 PF00085 Thioredoxin JFY49_03060 PF02541 Ppx/GppA phosphatase family JFY49_03065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JFY49_03070 PF01171 PP-loop family JFY49_03070 PF09179 TilS substrate binding domain JFY49_03070 PF11734 TilS substrate C-terminal domain JFY49_03075 PF03807 NADP oxidoreductase coenzyme F420-dependent JFY49_03075 PF14748 Pyrroline-5-carboxylate reductase dimerisation JFY49_03080 PF02325 YGGT family JFY49_03085 PF01612 3'-5' exonuclease JFY49_03085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JFY49_03085 PF01367 5'-3' exonuclease, C-terminal SAM fold JFY49_03085 PF00476 DNA polymerase family A JFY49_03105 PF00437 Type II/IV secretion system protein JFY49_03110 PF00795 Carbon-nitrogen hydrolase JFY49_03125 PF04333 MlaA lipoprotein JFY49_03160 PF04386 Stringent starvation protein B JFY49_03165 PF02798 Glutathione S-transferase, N-terminal domain JFY49_03165 PF00043 Glutathione S-transferase, C-terminal domain JFY49_03170 PF00380 Ribosomal protein S9/S16 JFY49_03175 PF00572 Ribosomal protein L13 JFY49_03180 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JFY49_03185 PF00398 Ribosomal RNA adenine dimethylase JFY49_03190 PF00149 Calcineurin-like phosphoesterase JFY49_03200 PF13006 Insertion element 4 transposase N-terminal JFY49_03200 PF01609 Transposase DDE domain JFY49_03200 PF13006 Insertion element 4 transposase N-terminal JFY49_03200 PF01609 Transposase DDE domain JFY49_03230 PF16360 GTP-binding GTPase Middle Region JFY49_03230 PF13167 GTP-binding GTPase N-terminal JFY49_03230 PF01926 50S ribosome-binding GTPase JFY49_03240 PF13091 PLD-like domain JFY49_03245 PF00149 Calcineurin-like phosphoesterase JFY49_03255 PF00083 Sugar (and other) transporter JFY49_03255 PF07690 Major Facilitator Superfamily JFY49_03260 PF03006 Haemolysin-III related JFY49_03270 PF13673 Acetyltransferase (GNAT) domain JFY49_03280 PF00378 Enoyl-CoA hydratase/isomerase JFY49_03280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JFY49_03280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JFY49_03285 PF02803 Thiolase, C-terminal domain JFY49_03285 PF00108 Thiolase, N-terminal domain JFY49_03290 PF12833 Helix-turn-helix domain JFY49_03290 PF02311 AraC-like ligand binding domain JFY49_03295 PF02515 CoA-transferase family III JFY49_03300 PF04966 Carbohydrate-selective porin, OprB family JFY49_03305 PF01011 PQQ enzyme repeat JFY49_03310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JFY49_03310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JFY49_03325 PF00108 Thiolase, N-terminal domain JFY49_03325 PF02803 Thiolase, C-terminal domain JFY49_03330 PF00114 Pilin (bacterial filament) JFY49_03330 PF07963 Prokaryotic N-terminal methylation motif JFY49_03335 PF00691 OmpA family JFY49_03335 PF13505 Outer membrane protein beta-barrel domain JFY49_03340 PF00561 alpha/beta hydrolase fold JFY49_03345 PF00324 Amino acid permease JFY49_03350 PF05175 Methyltransferase small domain JFY49_03350 PF08468 Methyltransferase small domain N-terminal JFY49_03355 PF00860 Permease family JFY49_03360 PF03144 Elongation factor Tu domain 2 JFY49_03360 PF00679 Elongation factor G C-terminus JFY49_03360 PF00009 Elongation factor Tu GTP binding domain JFY49_03365 PF01741 Large-conductance mechanosensitive channel, MscL JFY49_03375 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JFY49_03375 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JFY49_03375 PF06827 Zinc finger found in FPG and IleRS JFY49_03380 PF07715 TonB-dependent Receptor Plug Domain JFY49_03380 PF00593 TonB dependent receptor JFY49_03385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_03405 PF01571 Aminomethyltransferase folate-binding domain JFY49_03410 PF00330 Aconitase family (aconitate hydratase) JFY49_03410 PF00694 Aconitase C-terminal domain JFY49_03455 PF00849 RNA pseudouridylate synthase JFY49_03470 PF00199 Catalase JFY49_03480 PF04343 Protein of unknown function, DUF488 JFY49_03485 PF08274 PhnA Zinc-Ribbon JFY49_03485 PF03831 PhnA domain JFY49_03495 PF07411 Domain of unknown function (DUF1508) JFY49_03500 PF08543 Phosphomethylpyrimidine kinase JFY49_03500 PF03070 TENA/THI-4/PQQC family JFY49_03500 PF02581 Thiamine monophosphate synthase JFY49_03505 PF13419 Haloacid dehalogenase-like hydrolase JFY49_03510 PF01037 Lrp/AsnC ligand binding domain JFY49_03515 PF01266 FAD dependent oxidoreductase JFY49_03520 PF00842 Alanine racemase, C-terminal domain JFY49_03520 PF01168 Alanine racemase, N-terminal domain JFY49_03525 PF01042 Endoribonuclease L-PSP JFY49_03530 PF00324 Amino acid permease JFY49_03535 PF03653 Uncharacterised protein family (UPF0093) JFY49_03540 PF00109 Beta-ketoacyl synthase, N-terminal domain JFY49_03540 PF02801 Beta-ketoacyl synthase, C-terminal domain JFY49_03550 PF00164 Ribosomal protein S12/S23 JFY49_03555 PF00177 Ribosomal protein S7p/S5e JFY49_03560 PF03144 Elongation factor Tu domain 2 JFY49_03560 PF00679 Elongation factor G C-terminus JFY49_03560 PF14492 Elongation Factor G, domain II JFY49_03560 PF03764 Elongation factor G, domain IV JFY49_03560 PF00009 Elongation factor Tu GTP binding domain JFY49_03565 PF03143 Elongation factor Tu C-terminal domain JFY49_03565 PF00009 Elongation factor Tu GTP binding domain JFY49_03565 PF03144 Elongation factor Tu domain 2 JFY49_03575 PF00583 Acetyltransferase (GNAT) family JFY49_03580 PF04376 Arginine-tRNA-protein transferase, N terminus JFY49_03580 PF04377 Arginine-tRNA-protein transferase, C terminus JFY49_03585 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JFY49_03590 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_03595 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JFY49_03595 PF17854 FtsK alpha domain JFY49_03595 PF01580 FtsK/SpoIIIE family JFY49_03595 PF09397 Ftsk gamma domain JFY49_03610 PF03776 Septum formation topological specificity factor MinE JFY49_03615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JFY49_03620 PF03775 Septum formation inhibitor MinC, C-terminal domain JFY49_03630 PF01553 Acyltransferase JFY49_03635 PF04972 BON domain JFY49_03635 PF00691 OmpA family JFY49_03640 PF00580 UvrD/REP helicase N-terminal domain JFY49_03640 PF13361 UvrD-like helicase C-terminal domain JFY49_03645 PF00692 dUTPase JFY49_03650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JFY49_03650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JFY49_03650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JFY49_03650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JFY49_03655 PF00696 Amino acid kinase family JFY49_03660 PF13230 Glutamine amidotransferases class-II JFY49_03665 PF01814 Hemerythrin HHE cation binding domain JFY49_03675 PF03658 RnfH family Ubiquitin JFY49_03680 PF04355 SmpA / OmlA family JFY49_03685 PF01475 Ferric uptake regulator family JFY49_03690 PF00437 Type II/IV secretion system protein JFY49_03695 PF00437 Type II/IV secretion system protein JFY49_03700 PF01168 Alanine racemase, N-terminal domain JFY49_03715 PF12320 Type 5 capsule protein repressor C-terminal domain JFY49_03715 PF00149 Calcineurin-like phosphoesterase JFY49_03720 PF01590 GAF domain JFY49_03720 PF00360 Phytochrome region JFY49_03720 PF00563 EAL domain JFY49_03720 PF00990 Diguanylate cyclase, GGDEF domain JFY49_03735 PF09334 tRNA synthetases class I (M) JFY49_03735 PF01588 Putative tRNA binding domain JFY49_03755 PF05992 SbmA/BacA-like family JFY49_03795 PF02637 GatB domain JFY49_03795 PF02934 GatB/GatE catalytic domain JFY49_03800 PF01425 Amidase JFY49_03805 PF02686 Glu-tRNAGln amidotransferase C subunit JFY49_03815 PF04085 rod shape-determining protein MreC JFY49_03825 PF02545 Maf-like protein JFY49_03830 PF00575 S1 RNA binding domain JFY49_03830 PF10150 Ribonuclease E/G family JFY49_03840 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JFY49_03840 PF06974 Protein of unknown function (DUF1298) JFY49_03845 PF01507 Phosphoadenosine phosphosulfate reductase family JFY49_03875 PF00324 Amino acid permease JFY49_03880 PF04303 PrpF protein JFY49_03885 PF00348 Polyprenyl synthetase JFY49_03890 PF00474 Sodium:solute symporter family JFY49_03895 PF01145 SPFH domain / Band 7 family JFY49_03905 PF01734 Patatin-like phospholipase JFY49_03925 PF00884 Sulfatase JFY49_03925 PF08019 Phosphoethanolamine transferase EptA/EptB JFY49_03930 PF00072 Response regulator receiver domain JFY49_03930 PF00486 Transcriptional regulatory protein, C terminal JFY49_03935 PF00512 His Kinase A (phospho-acceptor) domain JFY49_03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_03935 PF08521 Two-component sensor kinase N-terminal JFY49_03945 PF13419 Haloacid dehalogenase-like hydrolase JFY49_03950 PF00909 Ammonium Transporter Family JFY49_03955 PF00005 ABC transporter JFY49_03960 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_03965 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_03970 PF00497 Bacterial extracellular solute-binding proteins, family 3 JFY49_03975 PF04239 Protein of unknown function (DUF421) JFY49_03990 PF13005 zinc-finger binding domain of transposase IS66 JFY49_03990 PF03050 Transposase IS66 family JFY49_03990 PF13817 IS66 C-terminal element JFY49_03990 PF13007 Transposase C of IS166 homeodomain JFY49_04015 PF08264 Anticodon-binding domain of tRNA JFY49_04015 PF10458 Valyl tRNA synthetase tRNA binding arm JFY49_04015 PF00133 tRNA synthetases class I (I, L, M and V) JFY49_04030 PF01906 Putative heavy-metal-binding JFY49_04035 PF01906 Putative heavy-metal-binding JFY49_04040 PF02321 Outer membrane efflux protein JFY49_04045 PF00873 AcrB/AcrD/AcrF family JFY49_04050 PF00529 HlyD membrane-fusion protein of T1SS JFY49_04050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_04055 PF01569 PAP2 superfamily JFY49_04065 PF00348 Polyprenyl synthetase JFY49_04070 PF00829 Ribosomal prokaryotic L21 protein JFY49_04075 PF01016 Ribosomal L27 protein JFY49_04080 PF03548 Outer membrane lipoprotein carrier protein LolA JFY49_04090 PF02403 Seryl-tRNA synthetase N-terminal domain JFY49_04090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JFY49_04095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JFY49_04095 PF14824 Sirohaem biosynthesis protein central JFY49_04095 PF10414 Sirohaem synthase dimerisation region JFY49_04100 PF00588 SpoU rRNA Methylase family JFY49_04105 PF13520 Amino acid permease JFY49_04110 PF00465 Iron-containing alcohol dehydrogenase JFY49_04120 PF03099 Biotin/lipoate A/B protein ligase family JFY49_04125 PF04359 Protein of unknown function (DUF493) JFY49_04130 PF03979 Sigma-70 factor, region 1.1 JFY49_04130 PF00140 Sigma-70 factor, region 1.2 JFY49_04130 PF04542 Sigma-70 region 2 JFY49_04130 PF04539 Sigma-70 region 3 JFY49_04130 PF04545 Sigma-70, region 4 JFY49_04130 PF04546 Sigma-70, non-essential region JFY49_04150 PF09335 SNARE associated Golgi protein JFY49_04160 PF00581 Rhodanese-like domain JFY49_04160 PF17773 UPF0176 acylphosphatase like domain JFY49_04170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JFY49_04175 PF13006 Insertion element 4 transposase N-terminal JFY49_04175 PF01609 Transposase DDE domain JFY49_04175 PF13006 Insertion element 4 transposase N-terminal JFY49_04175 PF01609 Transposase DDE domain JFY49_04180 PF02261 Aspartate decarboxylase JFY49_04185 PF01195 Peptidyl-tRNA hydrolase JFY49_04190 PF01386 Ribosomal L25p family JFY49_04195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JFY49_04195 PF14572 Phosphoribosyl synthetase-associated domain JFY49_04220 PF08544 GHMP kinases C terminal JFY49_04220 PF00288 GHMP kinases N terminal domain JFY49_04225 PF03550 Outer membrane lipoprotein LolB JFY49_04235 PF01488 Shikimate / quinate 5-dehydrogenase JFY49_04235 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JFY49_04235 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JFY49_04240 PF01807 CHC2 zinc finger JFY49_04240 PF08275 DNA primase catalytic core, N-terminal domain JFY49_04240 PF08278 DNA primase DnaG DnaB-binding JFY49_04240 PF10410 DnaB-helicase binding domain of primase JFY49_04245 PF13525 Outer membrane lipoprotein JFY49_04250 PF01479 S4 domain JFY49_04250 PF00849 RNA pseudouridylate synthase JFY49_04255 PF02578 Multi-copper polyphenol oxidoreductase laccase JFY49_04260 PF03358 NADPH-dependent FMN reductase JFY49_04265 PF01668 SmpB protein JFY49_04270 PF01467 Cytidylyltransferase-like JFY49_04275 PF00037 4Fe-4S binding domain JFY49_04300 PF02540 NAD synthase JFY49_04300 PF00795 Carbon-nitrogen hydrolase JFY49_04305 PF13296 Putative type VI secretion system Rhs element Vgr JFY49_04305 PF04717 Type VI secretion system, phage-baseplate injector JFY49_04305 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JFY49_04315 PF00285 Citrate synthase, C-terminal domain JFY49_04320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JFY49_04325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JFY49_04330 PF02910 Fumarate reductase flavoprotein C-term JFY49_04330 PF00890 FAD binding domain JFY49_04335 PF13085 2Fe-2S iron-sulfur cluster binding domain JFY49_04340 PF00676 Dehydrogenase E1 component JFY49_04340 PF16870 2-oxoglutarate dehydrogenase C-terminal JFY49_04340 PF16078 2-oxoglutarate dehydrogenase N-terminus JFY49_04340 PF02779 Transketolase, pyrimidine binding domain JFY49_04345 PF02817 e3 binding domain JFY49_04345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JFY49_04345 PF00364 Biotin-requiring enzyme JFY49_04350 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_04350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JFY49_04355 PF00549 CoA-ligase JFY49_04355 PF08442 ATP-grasp domain JFY49_04360 PF02629 CoA binding domain JFY49_04360 PF00549 CoA-ligase JFY49_04370 PF01522 Polysaccharide deacetylase JFY49_04370 PF14883 Hypothetical glycosyl hydrolase family 13 JFY49_04375 PF00535 Glycosyl transferase family 2 JFY49_04385 PF14883 Hypothetical glycosyl hydrolase family 13 JFY49_04385 PF01522 Polysaccharide deacetylase JFY49_04400 PF01507 Phosphoadenosine phosphosulfate reductase family JFY49_04405 PF00009 Elongation factor Tu GTP binding domain JFY49_04420 PF03551 Transcriptional regulator PadR-like family JFY49_04435 PF00085 Thioredoxin JFY49_04445 PF14765 Polyketide synthase dehydratase JFY49_04445 PF08659 KR domain JFY49_04445 PF00698 Acyl transferase domain JFY49_04445 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_04445 PF00550 Phosphopantetheine attachment site JFY49_04470 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JFY49_04470 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JFY49_04495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JFY49_04495 PF01266 FAD dependent oxidoreductase JFY49_04505 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JFY49_04505 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JFY49_04510 PF00781 Diacylglycerol kinase catalytic domain JFY49_04520 PF00166 Chaperonin 10 Kd subunit JFY49_04525 PF00118 TCP-1/cpn60 chaperonin family JFY49_04555 PF01695 IstB-like ATP binding protein JFY49_04575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JFY49_04625 PF03717 Penicillin-binding Protein dimerisation domain JFY49_04625 PF00905 Penicillin binding protein transpeptidase domain JFY49_04640 PF05191 Adenylate kinase, active site lid JFY49_04650 PF10576 Iron-sulfur binding domain of endonuclease III JFY49_04650 PF00633 Helix-hairpin-helix motif JFY49_04650 PF00730 HhH-GPD superfamily base excision DNA repair protein JFY49_04655 PF04060 Putative Fe-S cluster JFY49_04660 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JFY49_04660 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JFY49_04670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JFY49_04675 PF02590 Predicted SPOUT methyltransferase JFY49_04680 PF04389 Peptidase family M28 JFY49_04685 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_04685 PF05362 Lon protease (S16) C-terminal proteolytic domain JFY49_04685 PF02190 ATP-dependent protease La (LON) substrate-binding domain JFY49_04690 PF01812 5-formyltetrahydrofolate cyclo-ligase family JFY49_04695 PF13411 MerR HTH family regulatory protein JFY49_04720 PF03695 Uncharacterised protein family (UPF0149) JFY49_04725 PF05195 Aminopeptidase P, N-terminal domain JFY49_04725 PF00557 Metallopeptidase family M24 JFY49_04730 PF04070 Domain of unknown function (DUF378) JFY49_04735 PF01494 FAD binding domain JFY49_04740 PF01494 FAD binding domain JFY49_04750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JFY49_04760 PF02021 Uncharacterised protein family UPF0102 JFY49_04765 PF04972 BON domain JFY49_04775 PF09297 NADH pyrophosphatase zinc ribbon domain JFY49_04775 PF00293 NUDIX domain JFY49_04785 PF00929 Exonuclease JFY49_04790 PF01476 LysM domain JFY49_04790 PF01464 Transglycosylase SLT domain JFY49_04795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JFY49_04800 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_04805 PF12911 N-terminal TM domain of oligopeptide transport permease C JFY49_04805 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_04810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JFY49_04810 PF00005 ABC transporter JFY49_04815 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_04815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_04835 PF00324 Amino acid permease JFY49_04855 PF00929 Exonuclease JFY49_04860 PF01979 Amidohydrolase family JFY49_04865 PF00360 Phytochrome region JFY49_04865 PF00990 Diguanylate cyclase, GGDEF domain JFY49_04865 PF00563 EAL domain JFY49_04865 PF01590 GAF domain JFY49_04870 PF00764 Arginosuccinate synthase JFY49_04875 PF02652 L-lactate permease JFY49_04880 PF00392 Bacterial regulatory proteins, gntR family JFY49_04880 PF07729 FCD domain JFY49_04885 PF01070 FMN-dependent dehydrogenase JFY49_04890 PF01565 FAD binding domain JFY49_04890 PF09330 D-lactate dehydrogenase, membrane binding JFY49_04895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_04935 PF01654 Cytochrome bd terminal oxidase subunit I JFY49_04940 PF02322 Cytochrome bd terminal oxidase subunit II JFY49_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_04955 PF03466 LysR substrate binding domain JFY49_04960 PF05175 Methyltransferase small domain JFY49_04960 PF08468 Methyltransferase small domain N-terminal JFY49_04965 PF17954 Quercetinase C-terminal cupin domain JFY49_04965 PF02678 Pirin JFY49_04975 PF01208 Uroporphyrinogen decarboxylase (URO-D) JFY49_04980 PF05675 Protein of unknown function (DUF817) JFY49_04995 PF00990 Diguanylate cyclase, GGDEF domain JFY49_05005 PF01227 GTP cyclohydrolase I JFY49_05015 PF00218 Indole-3-glycerol phosphate synthase JFY49_05020 PF00591 Glycosyl transferase family, a/b domain JFY49_05020 PF02885 Glycosyl transferase family, helical bundle domain JFY49_05025 PF00117 Glutamine amidotransferase class-I JFY49_05130 PF03796 DnaB-like helicase C terminal domain JFY49_05130 PF00772 DnaB-like helicase N terminal domain JFY49_05190 PF02195 ParB-like nuclease domain JFY49_05285 PF10549 ORF11CD3 domain JFY49_05285 PF09669 Phage regulatory protein Rha (Phage_pRha) JFY49_05395 PF00589 Phage integrase family JFY49_05395 PF13356 Arm DNA-binding domain JFY49_05400 PF03951 Glutamine synthetase, beta-Grasp domain JFY49_05400 PF00120 Glutamine synthetase, catalytic domain JFY49_05410 PF04345 Chorismate lyase JFY49_05415 PF01040 UbiA prenyltransferase family JFY49_05420 PF03466 LysR substrate binding domain JFY49_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_05425 PF01494 FAD binding domain JFY49_05460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JFY49_05460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JFY49_05465 PF01784 NIF3 (NGG1p interacting factor 3) JFY49_05470 PF13180 PDZ domain JFY49_05490 PF00892 EamA-like transporter family JFY49_05495 PF00155 Aminotransferase class I and II JFY49_05505 PF00557 Metallopeptidase family M24 JFY49_05510 PF00318 Ribosomal protein S2 JFY49_05515 PF00889 Elongation factor TS JFY49_05530 PF05036 Sporulation related domain JFY49_05530 PF03330 Lytic transglycolase JFY49_05535 PF13406 Transglycosylase SLT domain JFY49_05545 PF14489 QueF-like protein JFY49_05545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JFY49_05550 PF01061 ABC-2 type transporter JFY49_05555 PF00005 ABC transporter JFY49_05565 PF00589 Phage integrase family JFY49_05565 PF13356 Arm DNA-binding domain JFY49_05615 PF02954 Bacterial regulatory protein, Fis family JFY49_05655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JFY49_05655 PF01348 Type II intron maturase JFY49_05800 PF04984 Phage tail sheath protein subtilisin-like domain JFY49_05800 PF17482 Phage tail sheath C-terminal domain JFY49_05835 PF13356 Arm DNA-binding domain JFY49_05835 PF00589 Phage integrase family JFY49_05895 PF13411 MerR HTH family regulatory protein JFY49_05920 PF00296 Luciferase-like monooxygenase JFY49_05925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_05925 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JFY49_05930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JFY49_05930 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_05930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_05960 PF08267 Cobalamin-independent synthase, N-terminal domain JFY49_05960 PF01717 Cobalamin-independent synthase, Catalytic domain JFY49_05965 PF01613 Flavin reductase like domain JFY49_05970 PF01925 Sulfite exporter TauE/SafE JFY49_06000 PF00464 Serine hydroxymethyltransferase JFY49_06005 PF14760 Rnk N-terminus JFY49_06005 PF01272 Transcription elongation factor, GreA/GreB, C-term JFY49_06010 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JFY49_06015 PF00027 Cyclic nucleotide-binding domain JFY49_06015 PF13545 Crp-like helix-turn-helix domain JFY49_06020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_06025 PF00768 D-alanyl-D-alanine carboxypeptidase JFY49_06025 PF07943 Penicillin-binding protein 5, C-terminal domain JFY49_06035 PF00849 RNA pseudouridylate synthase JFY49_06040 PF00180 Isocitrate/isopropylmalate dehydrogenase JFY49_06050 PF01757 Acyltransferase family JFY49_06055 PF00155 Aminotransferase class I and II JFY49_06060 PF01641 SelR domain JFY49_06065 PF00255 Glutathione peroxidase JFY49_06070 PF00155 Aminotransferase class I and II JFY49_06075 PF08335 GlnD PII-uridylyltransferase JFY49_06075 PF01909 Nucleotidyltransferase domain JFY49_06075 PF01966 HD domain JFY49_06080 PF02222 ATP-grasp domain JFY49_06085 PF05437 Branched-chain amino acid transport protein (AzlD) JFY49_06090 PF03591 AzlC protein JFY49_06115 PF01926 50S ribosome-binding GTPase JFY49_06115 PF06071 Protein of unknown function (DUF933) JFY49_06120 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_06125 PF09383 NIL domain JFY49_06125 PF00005 ABC transporter JFY49_06130 PF03180 NLPA lipoprotein JFY49_06135 PF03180 NLPA lipoprotein JFY49_06140 PF00296 Luciferase-like monooxygenase JFY49_06150 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JFY49_06150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_06165 PF01709 Transcriptional regulator JFY49_06185 PF06968 Biotin and Thiamin Synthesis associated domain JFY49_06185 PF04055 Radical SAM superfamily JFY49_06190 PF08331 Domain of unknown function (DUF1730) JFY49_06195 PF01256 Carbohydrate kinase JFY49_06195 PF03853 YjeF-related protein N-terminus JFY49_06200 PF00708 Acylphosphatase JFY49_06210 PF02075 Crossover junction endodeoxyribonuclease RuvC JFY49_06220 PF01810 LysE type translocator JFY49_06240 PF08803 Putative mono-oxygenase ydhR JFY49_06245 PF00438 S-adenosylmethionine synthetase, N-terminal domain JFY49_06245 PF02772 S-adenosylmethionine synthetase, central domain JFY49_06245 PF02773 S-adenosylmethionine synthetase, C-terminal domain JFY49_06250 PF12762 ISXO2-like transposase domain JFY49_06255 PF02779 Transketolase, pyrimidine binding domain JFY49_06255 PF02780 Transketolase, C-terminal domain JFY49_06255 PF00456 Transketolase, thiamine diphosphate binding domain JFY49_06265 PF04264 YceI-like domain JFY49_06270 PF00589 Phage integrase family JFY49_06380 PF03796 DnaB-like helicase C terminal domain JFY49_06380 PF00772 DnaB-like helicase N terminal domain JFY49_06415 PF00149 Calcineurin-like phosphoesterase JFY49_06575 PF10145 Phage-related minor tail protein JFY49_06575 PF01551 Peptidase family M23 JFY49_06575 PF01464 Transglycosylase SLT domain JFY49_06645 PF00958 GMP synthase C terminal domain JFY49_06645 PF02540 NAD synthase JFY49_06645 PF00117 Glutamine amidotransferase class-I JFY49_06650 PF00171 Aldehyde dehydrogenase family JFY49_06665 PF00465 Iron-containing alcohol dehydrogenase JFY49_06675 PF00005 ABC transporter JFY49_06685 PF07690 Major Facilitator Superfamily JFY49_06690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JFY49_06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_06690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JFY49_06690 PF18267 Rubredoxin NAD+ reductase C-terminal domain JFY49_06690 PF04324 BFD-like [2Fe-2S] binding domain JFY49_06695 PF04324 BFD-like [2Fe-2S] binding domain JFY49_06695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JFY49_06695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JFY49_06695 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_06695 PF18267 Rubredoxin NAD+ reductase C-terminal domain JFY49_06700 PF00384 Molybdopterin oxidoreductase JFY49_06700 PF01568 Molydopterin dinucleotide binding domain JFY49_06700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JFY49_06700 PF04324 BFD-like [2Fe-2S] binding domain JFY49_06705 PF12804 MobA-like NTP transferase domain JFY49_06710 PF06463 Molybdenum Cofactor Synthesis C JFY49_06710 PF04055 Radical SAM superfamily JFY49_06720 PF02391 MoaE protein JFY49_06725 PF00994 Probable molybdopterin binding domain JFY49_06725 PF01967 MoaC family JFY49_06730 PF03453 MoeA N-terminal region (domain I and II) JFY49_06730 PF03454 MoeA C-terminal region (domain IV) JFY49_06730 PF00994 Probable molybdopterin binding domain JFY49_06740 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_06745 PF03459 TOBE domain JFY49_06745 PF00005 ABC transporter JFY49_06750 PF00582 Universal stress protein family JFY49_06760 PF01406 tRNA synthetases class I (C) catalytic domain JFY49_06760 PF09190 DALR domain JFY49_06770 PF00571 CBS domain JFY49_06770 PF01380 SIS domain JFY49_06785 PF03968 OstA-like protein JFY49_06790 PF12399 Branched-chain amino acid ATP-binding cassette transporter JFY49_06790 PF00005 ABC transporter JFY49_06795 PF01205 Uncharacterized protein family UPF0029 JFY49_06805 PF00582 Universal stress protein family JFY49_06810 PF01596 O-methyltransferase JFY49_06820 PF00037 4Fe-4S binding domain JFY49_06820 PF11953 Domain of unknown function (DUF3470) JFY49_06825 PF05188 MutS domain II JFY49_06825 PF05190 MutS family domain IV JFY49_06825 PF01624 MutS domain I JFY49_06825 PF00488 MutS domain V JFY49_06825 PF05192 MutS domain III JFY49_06840 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_06845 PF00588 SpoU rRNA Methylase family JFY49_06850 PF07733 Bacterial DNA polymerase III alpha NTPase domain JFY49_06850 PF14579 Helix-hairpin-helix motif JFY49_06850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JFY49_06850 PF01336 OB-fold nucleic acid binding domain JFY49_06850 PF02811 PHP domain JFY49_06855 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_06860 PF09383 NIL domain JFY49_06860 PF00005 ABC transporter JFY49_06865 PF03180 NLPA lipoprotein JFY49_06870 PF02843 Phosphoribosylglycinamide synthetase, C domain JFY49_06870 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JFY49_06870 PF02844 Phosphoribosylglycinamide synthetase, N domain JFY49_06875 PF02142 MGS-like domain JFY49_06875 PF01808 AICARFT/IMPCHase bienzyme JFY49_06880 PF02954 Bacterial regulatory protein, Fis family JFY49_06905 PF01134 Glucose inhibited division protein A JFY49_06905 PF13932 GidA associated domain JFY49_06910 PF07690 Major Facilitator Superfamily JFY49_06920 PF00158 Sigma-54 interaction domain JFY49_06920 PF00072 Response regulator receiver domain JFY49_06920 PF02954 Bacterial regulatory protein, Fis family JFY49_06925 PF00512 His Kinase A (phospho-acceptor) domain JFY49_06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_06925 PF00989 PAS fold JFY49_06930 PF18693 TRAM domain JFY49_06930 PF00919 Uncharacterized protein family UPF0004 JFY49_06930 PF04055 Radical SAM superfamily JFY49_06935 PF00696 Amino acid kinase family JFY49_06940 PF01765 Ribosome recycling factor JFY49_06945 PF01255 Putative undecaprenyl diphosphate synthase JFY49_06955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JFY49_06955 PF13288 DXP reductoisomerase C-terminal domain JFY49_06955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JFY49_06960 PF13180 PDZ domain JFY49_06960 PF02163 Peptidase family M50 JFY49_06960 PF17820 PDZ domain JFY49_06965 PF07244 Surface antigen variable number repeat JFY49_06965 PF01103 Surface antigen JFY49_06975 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_06975 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JFY49_06980 PF07977 FabA-like domain JFY49_06985 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JFY49_06985 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_07000 PF02631 RecX family JFY49_07005 PF00154 recA bacterial DNA recombination protein JFY49_07010 PF01479 S4 domain JFY49_07015 PF13419 Haloacid dehalogenase-like hydrolase JFY49_07020 PF00459 Inositol monophosphatase family JFY49_07030 PF01649 Ribosomal protein S20 JFY49_07035 PF13460 NAD(P)H-binding JFY49_07040 PF03737 Aldolase/RraA JFY49_07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_07055 PF07730 Histidine kinase JFY49_07060 PF08007 Cupin superfamily protein JFY49_07065 PF02545 Maf-like protein JFY49_07075 PF00162 Phosphoglycerate kinase JFY49_07085 PF01116 Fructose-bisphosphate aldolase class-II JFY49_07100 PF00881 Nitroreductase family JFY49_07105 PF03328 HpcH/HpaI aldolase/citrate lyase family JFY49_07110 PF00149 Calcineurin-like phosphoesterase JFY49_07115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JFY49_07120 PF00749 tRNA synthetases class I (E and Q), catalytic domain JFY49_07120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JFY49_07125 PF01062 Bestrophin, RFP-TM, chloride channel JFY49_07155 PF05958 tRNA (Uracil-5-)-methyltransferase JFY49_07165 PF00171 Aldehyde dehydrogenase family JFY49_07165 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JFY49_07165 PF14850 DNA-binding domain of Proline dehydrogenase JFY49_07165 PF01619 Proline dehydrogenase JFY49_07170 PF01037 Lrp/AsnC ligand binding domain JFY49_07175 PF00474 Sodium:solute symporter family JFY49_07180 PF00206 Lyase JFY49_07180 PF10415 Fumarase C C-terminus JFY49_07190 PF17757 UvrB interaction domain JFY49_07190 PF00271 Helicase conserved C-terminal domain JFY49_07190 PF00270 DEAD/DEAH box helicase JFY49_07190 PF02559 CarD-like/TRCF domain JFY49_07190 PF03461 TRCF domain JFY49_07200 PF00211 Adenylate and Guanylate cyclase catalytic domain JFY49_07205 PF00111 2Fe-2S iron-sulfur cluster binding domain JFY49_07210 PF00012 Hsp70 protein JFY49_07215 PF07743 HSCB C-terminal oligomerisation domain JFY49_07215 PF00226 DnaJ domain JFY49_07220 PF01521 Iron-sulphur cluster biosynthesis JFY49_07225 PF01592 NifU-like N terminal domain JFY49_07230 PF00266 Aminotransferase class-V JFY49_07235 PF02082 Transcriptional regulator JFY49_07250 PF00216 Bacterial DNA-binding protein JFY49_07255 PF09312 SurA N-terminal domain JFY49_07285 PF00294 pfkB family carbohydrate kinase JFY49_07295 PF08367 Peptidase M16C associated JFY49_07295 PF00675 Insulinase (Peptidase family M16) JFY49_07295 PF05193 Peptidase M16 inactive domain JFY49_07300 PF02253 Phospholipase A1 JFY49_07305 PF02386 Cation transport protein JFY49_07310 PF02080 TrkA-C domain JFY49_07310 PF02254 TrkA-N domain JFY49_07315 PF00585 C-terminal regulatory domain of Threonine dehydratase JFY49_07315 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_07320 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JFY49_07330 PF01118 Semialdehyde dehydrogenase, NAD binding domain JFY49_07330 PF02774 Semialdehyde dehydrogenase, dimerisation domain JFY49_07340 PF02617 ATP-dependent Clp protease adaptor protein ClpS JFY49_07345 PF02861 Clp amino terminal domain, pathogenicity island component JFY49_07345 PF07724 AAA domain (Cdc48 subfamily) JFY49_07345 PF17871 AAA lid domain JFY49_07345 PF10431 C-terminal, D2-small domain, of ClpB protein JFY49_07345 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_07350 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JFY49_07360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JFY49_07360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JFY49_07365 PF00440 Bacterial regulatory proteins, tetR family JFY49_07375 PF00285 Citrate synthase, C-terminal domain JFY49_07385 PF00994 Probable molybdopterin binding domain JFY49_07385 PF18146 Damage-inducible protein CinA KH domain JFY49_07385 PF02464 Competence-damaged protein JFY49_07395 PF06418 CTP synthase N-terminus JFY49_07395 PF00117 Glutamine amidotransferase class-I JFY49_07400 PF00793 DAHP synthetase I family JFY49_07405 PF03952 Enolase, N-terminal domain JFY49_07405 PF00113 Enolase, C-terminal TIM barrel domain JFY49_07410 PF04977 Septum formation initiator JFY49_07415 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JFY49_07420 PF01098 Cell cycle protein JFY49_07440 PF08173 Membrane bound YbgT-like protein JFY49_07445 PF02322 Cytochrome bd terminal oxidase subunit II JFY49_07450 PF01654 Cytochrome bd terminal oxidase subunit I JFY49_07465 PF01230 HIT domain JFY49_07475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JFY49_07475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JFY49_07485 PF01053 Cys/Met metabolism PLP-dependent enzyme JFY49_07490 PF02575 YbaB/EbfC DNA-binding family JFY49_07495 PF02132 RecR protein JFY49_07495 PF13662 Toprim domain JFY49_07500 PF00570 HRDC domain JFY49_07500 PF01612 3'-5' exonuclease JFY49_07505 PF05166 YcgL domain JFY49_07515 PF01434 Peptidase family M41 JFY49_07515 PF17862 AAA+ lid domain JFY49_07515 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_07525 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_07530 PF00571 CBS domain JFY49_07530 PF00478 IMP dehydrogenase / GMP reductase domain JFY49_07560 PF05193 Peptidase M16 inactive domain JFY49_07560 PF00675 Insulinase (Peptidase family M16) JFY49_07565 PF00448 SRP54-type protein, GTPase domain JFY49_07565 PF02881 SRP54-type protein, helical bundle domain JFY49_07610 PF10145 Phage-related minor tail protein JFY49_07610 PF01551 Peptidase family M23 JFY49_07610 PF01464 Transglycosylase SLT domain JFY49_07615 PF01965 DJ-1/PfpI family JFY49_07620 PF00583 Acetyltransferase (GNAT) family JFY49_07625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_07625 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_07625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_07630 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_07630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_07630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_07635 PF03109 ABC1 family JFY49_07650 PF05175 Methyltransferase small domain JFY49_07655 PF01264 Chorismate synthase JFY49_07665 PF01266 FAD dependent oxidoreductase JFY49_07680 PF02542 YgbB family JFY49_07690 PF00793 DAHP synthetase I family JFY49_07695 PF01925 Sulfite exporter TauE/SafE JFY49_07700 PF02684 Lipid-A-disaccharide synthetase JFY49_07705 PF12852 Cupin JFY49_07705 PF12833 Helix-turn-helix domain JFY49_07710 PF00487 Fatty acid desaturase JFY49_07730 PF13006 Insertion element 4 transposase N-terminal JFY49_07730 PF01609 Transposase DDE domain JFY49_07730 PF01609 Transposase DDE domain JFY49_07730 PF13006 Insertion element 4 transposase N-terminal JFY49_07780 PF06074 Protein of unknown function (DUF935) JFY49_07955 PF00872 Transposase, Mutator family JFY49_07960 PF14659 Phage integrase, N-terminal SAM-like domain JFY49_07960 PF13356 Arm DNA-binding domain JFY49_07960 PF00589 Phage integrase family JFY49_07965 PF04073 Aminoacyl-tRNA editing domain JFY49_07975 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JFY49_07980 PF02277 Phosphoribosyltransferase JFY49_07990 PF02654 Cobalamin-5-phosphate synthase JFY49_08000 PF03788 LrgA family JFY49_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_08005 PF03466 LysR substrate binding domain JFY49_08025 PF02635 DsrE/DsrF-like family JFY49_08040 PF16363 GDP-mannose 4,6 dehydratase JFY49_08045 PF10415 Fumarase C C-terminus JFY49_08045 PF00206 Lyase JFY49_08060 PF07690 Major Facilitator Superfamily JFY49_08075 PF00565 Staphylococcal nuclease homologue JFY49_08080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_08080 PF03466 LysR substrate binding domain JFY49_08085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_08085 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_08085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_08100 PF00106 short chain dehydrogenase JFY49_08120 PF13091 PLD-like domain JFY49_08125 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_08125 PF00107 Zinc-binding dehydrogenase JFY49_08130 PF00155 Aminotransferase class I and II JFY49_08140 PF00793 DAHP synthetase I family JFY49_08145 PF00437 Type II/IV secretion system protein JFY49_08150 PF01597 Glycine cleavage H-protein JFY49_08155 PF12833 Helix-turn-helix domain JFY49_08155 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JFY49_08165 PF00005 ABC transporter JFY49_08165 PF00664 ABC transporter transmembrane region JFY49_08175 PF03441 FAD binding domain of DNA photolyase JFY49_08175 PF00875 DNA photolyase JFY49_08180 PF00924 Mechanosensitive ion channel JFY49_08185 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JFY49_08195 PF00375 Sodium:dicarboxylate symporter family JFY49_08200 PF01740 STAS domain JFY49_08200 PF00916 Sulfate permease family JFY49_08210 PF01553 Acyltransferase JFY49_08215 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_08220 PF03466 LysR substrate binding domain JFY49_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_08225 PF08360 QacR-like protein, C-terminal region JFY49_08225 PF00440 Bacterial regulatory proteins, tetR family JFY49_08230 PF12806 Acetyl-CoA dehydrogenase C-terminal like JFY49_08230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_08230 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_08230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_08235 PF02803 Thiolase, C-terminal domain JFY49_08235 PF00108 Thiolase, N-terminal domain JFY49_08240 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JFY49_08240 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JFY49_08250 PF13419 Haloacid dehalogenase-like hydrolase JFY49_08260 PF01144 Coenzyme A transferase JFY49_08265 PF01144 Coenzyme A transferase JFY49_08270 PF00682 HMGL-like JFY49_08275 PF00289 Biotin carboxylase, N-terminal domain JFY49_08275 PF00364 Biotin-requiring enzyme JFY49_08275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JFY49_08275 PF18140 Propionyl-coenzyme A carboxylase BT domain JFY49_08275 PF02785 Biotin carboxylase C-terminal domain JFY49_08280 PF00378 Enoyl-CoA hydratase/isomerase JFY49_08285 PF01039 Carboxyl transferase domain JFY49_08290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_08290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_08290 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_08295 PF00440 Bacterial regulatory proteins, tetR family JFY49_08300 PF13193 AMP-binding enzyme C-terminal domain JFY49_08300 PF00501 AMP-binding enzyme JFY49_08310 PF07690 Major Facilitator Superfamily JFY49_08315 PF00982 Glycosyltransferase family 20 JFY49_08340 PF18381 YcaO cyclodehydratase C-terminal domain JFY49_08340 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JFY49_08350 PF12146 Serine aminopeptidase, S33 JFY49_08355 PF00108 Thiolase, N-terminal domain JFY49_08355 PF02803 Thiolase, C-terminal domain JFY49_08360 PF01144 Coenzyme A transferase JFY49_08365 PF01144 Coenzyme A transferase JFY49_08370 PF03594 Benzoate membrane transport protein JFY49_08375 PF00106 short chain dehydrogenase JFY49_08380 PF00175 Oxidoreductase NAD-binding domain JFY49_08380 PF00111 2Fe-2S iron-sulfur cluster binding domain JFY49_08380 PF00970 Oxidoreductase FAD-binding domain JFY49_08385 PF00866 Ring hydroxylating beta subunit JFY49_08390 PF00355 Rieske [2Fe-2S] domain JFY49_08390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JFY49_08395 PF00775 Dioxygenase JFY49_08395 PF04444 Catechol dioxygenase N terminus JFY49_08400 PF02426 Muconolactone delta-isomerase JFY49_08405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JFY49_08405 PF13378 Enolase C-terminal domain-like JFY49_08410 PF03466 LysR substrate binding domain JFY49_08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_08415 PF07690 Major Facilitator Superfamily JFY49_08430 PF02687 FtsX-like permease family JFY49_08430 PF12704 MacB-like periplasmic core domain JFY49_08435 PF00005 ABC transporter JFY49_08450 PF00155 Aminotransferase class I and II JFY49_08450 PF00392 Bacterial regulatory proteins, gntR family JFY49_08455 PF01425 Amidase JFY49_08460 PF00691 OmpA family JFY49_08465 PF06744 Type VI secretion protein IcmF C-terminal JFY49_08465 PF14331 ImcF-related N-terminal domain JFY49_08465 PF06761 Intracellular multiplication and human macrophage-killing JFY49_08480 PF05947 Type VI secretion system, TssF JFY49_08495 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JFY49_08510 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_08510 PF07724 AAA domain (Cdc48 subfamily) JFY49_08510 PF17871 AAA lid domain JFY49_08510 PF10431 C-terminal, D2-small domain, of ClpB protein JFY49_08520 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JFY49_08540 PF00561 alpha/beta hydrolase fold JFY49_08560 PF00717 Peptidase S24-like JFY49_08575 PF01220 Dehydroquinase class II JFY49_08580 PF00364 Biotin-requiring enzyme JFY49_08585 PF00289 Biotin carboxylase, N-terminal domain JFY49_08585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JFY49_08585 PF02785 Biotin carboxylase C-terminal domain JFY49_08595 PF12832 MFS_1 like family JFY49_08655 PF00199 Catalase JFY49_08655 PF06628 Catalase-related immune-responsive JFY49_08655 PF18011 C-terminal domain found in long catalases JFY49_08695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_08695 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_08705 PF12697 Alpha/beta hydrolase family JFY49_08710 PF02146 Sir2 family JFY49_08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_08715 PF03466 LysR substrate binding domain JFY49_08720 PF00557 Metallopeptidase family M24 JFY49_08725 PF05525 Branched-chain amino acid transport protein JFY49_08745 PF00990 Diguanylate cyclase, GGDEF domain JFY49_08750 PF00330 Aconitase family (aconitate hydratase) JFY49_08750 PF11791 Aconitate B N-terminal domain JFY49_08750 PF06434 Aconitate hydratase 2 N-terminus JFY49_08765 PF00313 'Cold-shock' DNA-binding domain JFY49_08785 PF07244 Surface antigen variable number repeat JFY49_08785 PF01103 Surface antigen JFY49_08785 PF17243 POTRA domain TamA domain 1 JFY49_08790 PF07690 Major Facilitator Superfamily JFY49_08795 PF03232 Ubiquinone biosynthesis protein COQ7 JFY49_08800 PF06865 Pyrimidine/purine nucleoside phosphorylase JFY49_08805 PF05922 Peptidase inhibitor I9 JFY49_08805 PF00082 Subtilase family JFY49_08815 PF02152 Dihydroneopterin aldolase JFY49_08820 PF03109 ABC1 family JFY49_08825 PF00899 ThiF family JFY49_08830 PF00501 AMP-binding enzyme JFY49_08830 PF13193 AMP-binding enzyme C-terminal domain JFY49_08835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_08835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_08835 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_08840 PF00106 short chain dehydrogenase JFY49_08855 PF09084 NMT1/THI5 like JFY49_08860 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_08865 PF13847 Methyltransferase domain JFY49_08865 PF17827 PrmC N-terminal domain JFY49_08870 PF00472 RF-1 domain JFY49_08870 PF03462 PCRF domain JFY49_08885 PF00296 Luciferase-like monooxygenase JFY49_08900 PF03618 Kinase/pyrophosphorylase JFY49_08905 PF00391 PEP-utilising enzyme, mobile domain JFY49_08905 PF02896 PEP-utilising enzyme, TIM barrel domain JFY49_08905 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JFY49_08915 PF06481 COX Aromatic Rich Motif JFY49_08915 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JFY49_08920 PF00115 Cytochrome C and Quinol oxidase polypeptide I JFY49_08925 PF00510 Cytochrome c oxidase subunit III JFY49_08930 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JFY49_08935 PF01040 UbiA prenyltransferase family JFY49_08940 PF01250 Ribosomal protein S6 JFY49_08945 PF01084 Ribosomal protein S18 JFY49_08950 PF01281 Ribosomal protein L9, N-terminal domain JFY49_08950 PF03948 Ribosomal protein L9, C-terminal domain JFY49_08955 PF03796 DnaB-like helicase C terminal domain JFY49_08955 PF00772 DnaB-like helicase N terminal domain JFY49_08960 PF01168 Alanine racemase, N-terminal domain JFY49_08960 PF00842 Alanine racemase, C-terminal domain JFY49_08970 PF01841 Transglutaminase-like superfamily JFY49_08970 PF08379 Bacterial transglutaminase-like N-terminal region JFY49_08980 PF14403 Circularly permuted ATP-grasp type 2 JFY49_08990 PF01645 Conserved region in glutamate synthase JFY49_09005 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JFY49_09005 PF01565 FAD binding domain JFY49_09010 PF01451 Low molecular weight phosphotyrosine protein phosphatase JFY49_09015 PF00465 Iron-containing alcohol dehydrogenase JFY49_09020 PF03061 Thioesterase superfamily JFY49_09025 PF12169 DNA polymerase III subunits gamma and tau domain III JFY49_09025 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JFY49_09025 PF12170 DNA polymerase III tau subunit V interacting with alpha JFY49_09035 PF00144 Beta-lactamase JFY49_09050 PF00108 Thiolase, N-terminal domain JFY49_09050 PF02803 Thiolase, C-terminal domain JFY49_09060 PF03466 LysR substrate binding domain JFY49_09060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_09065 PF00923 Transaldolase/Fructose-6-phosphate aldolase JFY49_09070 PF01810 LysE type translocator JFY49_09075 PF03594 Benzoate membrane transport protein JFY49_09080 PF00135 Carboxylesterase family JFY49_09085 PF00582 Universal stress protein family JFY49_09090 PF00582 Universal stress protein family JFY49_09100 PF11940 Domain of unknown function (DUF3458) Ig-like fold JFY49_09100 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JFY49_09100 PF01433 Peptidase family M1 domain JFY49_09115 PF02110 Hydroxyethylthiazole kinase family JFY49_09125 PF03471 Transporter associated domain JFY49_09125 PF03741 Integral membrane protein TerC family JFY49_09150 PF00171 Aldehyde dehydrogenase family JFY49_09155 PF01274 Malate synthase JFY49_09160 PF03969 AFG1-like ATPase JFY49_09170 PF00743 Flavin-binding monooxygenase-like JFY49_09175 PF03956 Lysine exporter LysO JFY49_09180 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JFY49_09190 PF00216 Bacterial DNA-binding protein JFY49_09195 PF00575 S1 RNA binding domain JFY49_09200 PF02224 Cytidylate kinase JFY49_09210 PF14437 MafB19-like deaminase JFY49_09220 PF03167 Uracil DNA glycosylase superfamily JFY49_09230 PF03934 Type II secretion system (T2SS), protein K JFY49_09235 PF11612 Type II secretion system (T2SS), protein J JFY49_09235 PF07963 Prokaryotic N-terminal methylation motif JFY49_09240 PF02501 Type II secretion system (T2SS), protein I JFY49_09240 PF07963 Prokaryotic N-terminal methylation motif JFY49_09245 PF07963 Prokaryotic N-terminal methylation motif JFY49_09245 PF08334 Type II secretion system (T2SS), protein G JFY49_09250 PF00440 Bacterial regulatory proteins, tetR family JFY49_09255 PF01026 TatD related DNase JFY49_09265 PF09115 DNA polymerase III, delta subunit, C terminal JFY49_09270 PF02348 Cytidylyltransferase JFY49_09275 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JFY49_09280 PF00005 ABC transporter JFY49_09280 PF00664 ABC transporter transmembrane region JFY49_09290 PF01618 MotA/TolQ/ExbB proton channel family JFY49_09295 PF02195 ParB-like nuclease domain JFY49_09295 PF17762 HTH domain found in ParB protein JFY49_09300 PF13614 AAA domain JFY49_09305 PF02527 rRNA small subunit methyltransferase G JFY49_09310 PF00483 Nucleotidyl transferase JFY49_09315 PF01636 Phosphotransferase enzyme family JFY49_09320 PF04453 LPS transport system D JFY49_09320 PF03968 OstA-like protein JFY49_09325 PF09312 SurA N-terminal domain JFY49_09325 PF00639 PPIC-type PPIASE domain JFY49_09330 PF17209 Hfq protein JFY49_09340 PF01119 DNA mismatch repair protein, C-terminal domain JFY49_09340 PF08676 MutL C terminal dimerisation domain JFY49_09345 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JFY49_09350 PF00849 RNA pseudouridylate synthase JFY49_09350 PF01479 S4 domain JFY49_09365 PF01479 S4 domain JFY49_09365 PF00849 RNA pseudouridylate synthase JFY49_09370 PF04284 Protein of unknown function (DUF441) JFY49_09375 PF07690 Major Facilitator Superfamily JFY49_09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_09380 PF03466 LysR substrate binding domain JFY49_09385 PF01717 Cobalamin-independent synthase, Catalytic domain JFY49_09385 PF08267 Cobalamin-independent synthase, N-terminal domain JFY49_09395 PF00520 Ion transport protein JFY49_09395 PF00027 Cyclic nucleotide-binding domain JFY49_09400 PF05970 PIF1-like helicase JFY49_09400 PF14493 Helix-turn-helix domain JFY49_09415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JFY49_09415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JFY49_09420 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JFY49_09420 PF00271 Helicase conserved C-terminal domain JFY49_09420 PF04408 Helicase associated domain (HA2) JFY49_09420 PF11898 Domain of unknown function (DUF3418) JFY49_09420 PF00270 DEAD/DEAH box helicase JFY49_09425 PF00578 AhpC/TSA family JFY49_09425 PF10417 C-terminal domain of 1-Cys peroxiredoxin JFY49_09445 PF13192 Thioredoxin domain JFY49_09445 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_09475 PF03060 Nitronate monooxygenase JFY49_09485 PF01207 Dihydrouridine synthase (Dus) JFY49_09490 PF07759 Protein of unknown function (DUF1615) JFY49_09500 PF00114 Pilin (bacterial filament) JFY49_09500 PF07963 Prokaryotic N-terminal methylation motif JFY49_09505 PF00114 Pilin (bacterial filament) JFY49_09505 PF07963 Prokaryotic N-terminal methylation motif JFY49_09510 PF00487 Fatty acid desaturase JFY49_09515 PF00970 Oxidoreductase FAD-binding domain JFY49_09515 PF00111 2Fe-2S iron-sulfur cluster binding domain JFY49_09515 PF00175 Oxidoreductase NAD-binding domain JFY49_09520 PF00440 Bacterial regulatory proteins, tetR family JFY49_09535 PF00271 Helicase conserved C-terminal domain JFY49_09535 PF12137 RNA polymerase recycling family C-terminal JFY49_09535 PF00176 SNF2 family N-terminal domain JFY49_09535 PF18339 RapA N-terminal Tudor like domain 1 JFY49_09535 PF18337 RapA N-terminal Tudor like domain JFY49_09540 PF00849 RNA pseudouridylate synthase JFY49_09550 PF03928 Haem-degrading JFY49_09555 PF00202 Aminotransferase class-III JFY49_09560 PF02581 Thiamine monophosphate synthase JFY49_09570 PF01928 CYTH domain JFY49_09595 PF05193 Peptidase M16 inactive domain JFY49_09595 PF00675 Insulinase (Peptidase family M16) JFY49_09600 PF02567 Phenazine biosynthesis-like protein JFY49_09610 PF00753 Metallo-beta-lactamase superfamily JFY49_09610 PF16123 Hydroxyacylglutathione hydrolase C-terminus JFY49_09645 PF03793 PASTA domain JFY49_09645 PF00069 Protein kinase domain JFY49_09665 PF00814 Glycoprotease family JFY49_09670 PF01165 Ribosomal protein S21 JFY49_09675 PF09424 Yqey-like protein JFY49_09690 PF01435 Peptidase family M48 JFY49_09690 PF13181 Tetratricopeptide repeat JFY49_09695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JFY49_09695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JFY49_09710 PF00156 Phosphoribosyl transferase domain JFY49_09720 PF01180 Dihydroorotate dehydrogenase JFY49_09740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JFY49_09740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JFY49_09745 PF00881 Nitroreductase family JFY49_09755 PF00270 DEAD/DEAH box helicase JFY49_09755 PF00271 Helicase conserved C-terminal domain JFY49_09760 PF00313 'Cold-shock' DNA-binding domain JFY49_09770 PF04542 Sigma-70 region 2 JFY49_09770 PF04545 Sigma-70, region 4 JFY49_09770 PF00140 Sigma-70 factor, region 1.2 JFY49_09775 PF04241 Protein of unknown function (DUF423) JFY49_09785 PF05690 Thiazole biosynthesis protein ThiG JFY49_09795 PF00043 Glutathione S-transferase, C-terminal domain JFY49_09795 PF02798 Glutathione S-transferase, N-terminal domain JFY49_09800 PF01740 STAS domain JFY49_09800 PF00916 Sulfate permease family JFY49_09805 PF02390 Putative methyltransferase JFY49_09820 PF00691 OmpA family JFY49_09820 PF05736 OprF membrane domain JFY49_09835 PF01979 Amidohydrolase family JFY49_09840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JFY49_09840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JFY49_09855 PF01170 Putative RNA methylase family UPF0020 JFY49_09855 PF02926 THUMP domain JFY49_09855 PF10672 S-adenosylmethionine-dependent methyltransferase JFY49_09865 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_09865 PF07724 AAA domain (Cdc48 subfamily) JFY49_09865 PF10431 C-terminal, D2-small domain, of ClpB protein JFY49_09865 PF02861 Clp amino terminal domain, pathogenicity island component JFY49_09865 PF17871 AAA lid domain JFY49_09870 PF02566 OsmC-like protein JFY49_09875 PF00027 Cyclic nucleotide-binding domain JFY49_09875 PF13545 Crp-like helix-turn-helix domain JFY49_09880 PF00248 Aldo/keto reductase family JFY49_09895 PF00709 Adenylosuccinate synthetase JFY49_09900 PF13393 Histidyl-tRNA synthetase JFY49_09910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JFY49_09910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JFY49_09915 PF02272 DHHA1 domain JFY49_09915 PF01411 tRNA synthetases class II (A) JFY49_09915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JFY49_09920 PF13840 ACT domain JFY49_09920 PF00696 Amino acid kinase family JFY49_09920 PF01842 ACT domain JFY49_09925 PF02599 Global regulator protein family JFY49_09930 PF01351 Ribonuclease HII JFY49_09940 PF01292 Prokaryotic cytochrome b561 JFY49_09950 PF00962 Adenosine/AMP deaminase JFY49_09955 PF00860 Permease family JFY49_09965 PF03883 Peroxide stress protein YaaA JFY49_09975 PF00145 C-5 cytosine-specific DNA methylase JFY49_09975 PF13411 MerR HTH family regulatory protein JFY49_09980 PF12323 Helix-turn-helix domain JFY49_09980 PF07282 Putative transposase DNA-binding domain JFY49_09980 PF01385 Probable transposase JFY49_09995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JFY49_10000 PF00155 Aminotransferase class I and II JFY49_10005 PF00800 Prephenate dehydratase JFY49_10005 PF01817 Chorismate mutase type II JFY49_10005 PF01842 ACT domain JFY49_10010 PF01965 DJ-1/PfpI family JFY49_10015 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_10015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_10015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_10020 PF00375 Sodium:dicarboxylate symporter family JFY49_10025 PF02885 Glycosyl transferase family, helical bundle domain JFY49_10025 PF00591 Glycosyl transferase family, a/b domain JFY49_10030 PF07023 Protein of unknown function (DUF1315) JFY49_10035 PF01513 ATP-NAD kinase JFY49_10040 PF14814 Bifunctional transglycosylase second domain JFY49_10040 PF00905 Penicillin binding protein transpeptidase domain JFY49_10040 PF00912 Transglycosylase JFY49_10050 PF00293 NUDIX domain JFY49_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_10060 PF00512 His Kinase A (phospho-acceptor) domain JFY49_10060 PF08521 Two-component sensor kinase N-terminal JFY49_10065 PF00072 Response regulator receiver domain JFY49_10065 PF00486 Transcriptional regulatory protein, C terminal JFY49_10075 PF00437 Type II/IV secretion system protein JFY49_10075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JFY49_10085 PF18389 TrmO C-terminal domain JFY49_10085 PF01980 tRNA-methyltransferase O JFY49_10090 PF00175 Oxidoreductase NAD-binding domain JFY49_10090 PF00970 Oxidoreductase FAD-binding domain JFY49_10100 PF13411 MerR HTH family regulatory protein JFY49_10105 PF16325 Peptidase family U32 C-terminal domain JFY49_10105 PF01136 Peptidase family U32 JFY49_10110 PF00037 4Fe-4S binding domain JFY49_10115 PF13192 Thioredoxin domain JFY49_10115 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_10125 PF05816 Toxic anion resistance protein (TelA) JFY49_10150 PF01841 Transglutaminase-like superfamily JFY49_10150 PF13559 Domain of unknown function (DUF4129) JFY49_10150 PF11992 Domain of unknown function (DUF3488) JFY49_10170 PF02554 Carbon starvation protein CstA JFY49_10170 PF13722 5TM C-terminal transporter carbon starvation CstA JFY49_10175 PF01132 Elongation factor P (EF-P) OB domain JFY49_10175 PF08207 Elongation factor P (EF-P) KOW-like domain JFY49_10175 PF09285 Elongation factor P, C-terminal JFY49_10180 PF04055 Radical SAM superfamily JFY49_10195 PF01197 Ribosomal protein L31 JFY49_10200 PF13593 SBF-like CPA transporter family (DUF4137) JFY49_10205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JFY49_10210 PF07690 Major Facilitator Superfamily JFY49_10215 PF05362 Lon protease (S16) C-terminal proteolytic domain JFY49_10215 PF13654 AAA domain JFY49_10220 PF00462 Glutaredoxin JFY49_10225 PF00202 Aminotransferase class-III JFY49_10230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_10230 PF03466 LysR substrate binding domain JFY49_10235 PF01551 Peptidase family M23 JFY49_10235 PF01476 LysM domain JFY49_10245 PF01348 Type II intron maturase JFY49_10245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JFY49_10265 PF07943 Penicillin-binding protein 5, C-terminal domain JFY49_10265 PF00768 D-alanyl-D-alanine carboxypeptidase JFY49_10270 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_10280 PF00293 NUDIX domain JFY49_10290 PF04356 Protein of unknown function (DUF489) JFY49_10295 PF00206 Lyase JFY49_10295 PF08328 Adenylosuccinate lyase C-terminal JFY49_10305 PF01343 Peptidase family S49 JFY49_10305 PF08496 Peptidase family S49 N-terminal JFY49_10315 PF00005 ABC transporter JFY49_10320 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_10325 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_10330 PF12849 PBP superfamily domain JFY49_10335 PF00282 Pyridoxal-dependent decarboxylase conserved domain JFY49_10340 PF00202 Aminotransferase class-III JFY49_10360 PF00696 Amino acid kinase family JFY49_10360 PF01472 PUA domain JFY49_10365 PF01018 GTP1/OBG JFY49_10365 PF01926 50S ribosome-binding GTPase JFY49_10370 PF07690 Major Facilitator Superfamily JFY49_10375 PF01638 HxlR-like helix-turn-helix JFY49_10380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JFY49_10380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JFY49_10385 PF00892 EamA-like transporter family JFY49_10395 PF00271 Helicase conserved C-terminal domain JFY49_10395 PF04851 Type III restriction enzyme, res subunit JFY49_10395 PF02151 UvrB/uvrC motif JFY49_10395 PF12344 Ultra-violet resistance protein B JFY49_10395 PF17757 UvrB interaction domain JFY49_10405 PF08448 PAS fold JFY49_10405 PF00990 Diguanylate cyclase, GGDEF domain JFY49_10425 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JFY49_10430 PF02417 Chromate transporter JFY49_10440 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_10440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JFY49_10445 PF04055 Radical SAM superfamily JFY49_10455 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JFY49_10460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JFY49_10465 PF11967 Recombination protein O N terminal JFY49_10465 PF02565 Recombination protein O C terminal JFY49_10475 PF07650 KH domain JFY49_10475 PF01926 50S ribosome-binding GTPase JFY49_10480 PF00035 Double-stranded RNA binding motif JFY49_10480 PF14622 Ribonuclease-III-like JFY49_10490 PF10502 Signal peptidase, peptidase S26 JFY49_10495 PF03144 Elongation factor Tu domain 2 JFY49_10495 PF00009 Elongation factor Tu GTP binding domain JFY49_10495 PF00679 Elongation factor G C-terminus JFY49_10495 PF06421 GTP-binding protein LepA C-terminus JFY49_10505 PF13180 PDZ domain JFY49_10515 PF02910 Fumarate reductase flavoprotein C-term JFY49_10515 PF00890 FAD binding domain JFY49_10525 PF02223 Thymidylate kinase JFY49_10530 PF02618 YceG-like family JFY49_10555 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_10565 PF12857 TOBE-like domain JFY49_10565 PF00005 ABC transporter JFY49_10570 PF03466 LysR substrate binding domain JFY49_10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_10585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JFY49_10585 PF14602 Hexapeptide repeat of succinyl-transferase JFY49_10585 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_10590 PF04055 Radical SAM superfamily JFY49_10595 PF06508 Queuosine biosynthesis protein QueC JFY49_10605 PF00578 AhpC/TSA family JFY49_10610 PF01810 LysE type translocator JFY49_10620 PF04264 YceI-like domain JFY49_10625 PF00293 NUDIX domain JFY49_10625 PF01467 Cytidylyltransferase-like JFY49_10630 PF00378 Enoyl-CoA hydratase/isomerase JFY49_10635 PF00881 Nitroreductase family JFY49_10640 PF01784 NIF3 (NGG1p interacting factor 3) JFY49_10650 PF02769 AIR synthase related protein, C-terminal domain JFY49_10650 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JFY49_10650 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JFY49_10655 PF01966 HD domain JFY49_10660 PF07499 RuvA, C-terminal domain JFY49_10660 PF01330 RuvA N terminal domain JFY49_10665 PF17864 RuvB AAA lid domain JFY49_10665 PF05491 RuvB C-terminal winged helix domain JFY49_10665 PF05496 Holliday junction DNA helicase RuvB P-loop domain JFY49_10680 PF07687 Peptidase dimerisation domain JFY49_10680 PF01546 Peptidase family M20/M25/M40 JFY49_10685 PF03061 Thioesterase superfamily JFY49_10690 PF01618 MotA/TolQ/ExbB proton channel family JFY49_10695 PF02472 Biopolymer transport protein ExbD/TolR JFY49_10705 PF07676 WD40-like Beta Propeller Repeat JFY49_10705 PF04052 TolB amino-terminal domain JFY49_10710 PF00691 OmpA family JFY49_10720 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JFY49_10725 PF00588 SpoU rRNA Methylase family JFY49_10725 PF08032 RNA 2'-O ribose methyltransferase substrate binding JFY49_10755 PF00308 Bacterial dnaA protein JFY49_10755 PF08299 Bacterial dnaA protein helix-turn-helix JFY49_10755 PF11638 DnaA N-terminal domain JFY49_10760 PF01594 AI-2E family transporter JFY49_10765 PF00586 AIR synthase related protein, N-terminal domain JFY49_10765 PF02769 AIR synthase related protein, C-terminal domain JFY49_10770 PF00551 Formyl transferase JFY49_10780 PF01343 Peptidase family S49 JFY49_10780 PF06965 Na+/H+ antiporter 1 JFY49_10790 PF13567 Domain of unknown function (DUF4131) JFY49_10790 PF03772 Competence protein JFY49_10790 PF00753 Metallo-beta-lactamase superfamily JFY49_10795 PF00005 ABC transporter JFY49_10800 PF12704 MacB-like periplasmic core domain JFY49_10800 PF02687 FtsX-like permease family JFY49_10810 PF00892 EamA-like transporter family JFY49_10815 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JFY49_10830 PF00266 Aminotransferase class-V JFY49_10840 PF13533 Biotin-lipoyl like JFY49_10855 PF00375 Sodium:dicarboxylate symporter family JFY49_10860 PF00521 DNA gyrase/topoisomerase IV, subunit A JFY49_10860 PF03989 DNA gyrase C-terminal domain, beta-propeller JFY49_10865 PF01012 Electron transfer flavoprotein domain JFY49_10865 PF00766 Electron transfer flavoprotein FAD-binding domain JFY49_10870 PF01012 Electron transfer flavoprotein domain JFY49_10875 PF01810 LysE type translocator JFY49_10880 PF01037 Lrp/AsnC ligand binding domain JFY49_10890 PF00589 Phage integrase family JFY49_10890 PF02899 Phage integrase, N-terminal SAM-like domain JFY49_10895 PF00561 alpha/beta hydrolase fold JFY49_10900 PF01678 Diaminopimelate epimerase JFY49_10905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JFY49_10905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JFY49_10915 PF00324 Amino acid permease JFY49_10920 PF18073 Rubredoxin metal binding domain JFY49_10945 PF05221 S-adenosyl-L-homocysteine hydrolase JFY49_10945 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JFY49_10950 PF02219 Methylenetetrahydrofolate reductase JFY49_10955 PF04452 RNA methyltransferase JFY49_10960 PF00990 Diguanylate cyclase, GGDEF domain JFY49_10960 PF00563 EAL domain JFY49_10960 PF03707 Bacterial signalling protein N terminal repeat JFY49_10965 PF03949 Malic enzyme, NAD binding domain JFY49_10965 PF01515 Phosphate acetyl/butaryl transferase JFY49_10965 PF00390 Malic enzyme, N-terminal domain JFY49_10970 PF01743 Poly A polymerase head domain JFY49_10970 PF12627 Probable RNA and SrmB- binding site of polymerase A JFY49_10980 PF00152 tRNA synthetases class II (D, K and N) JFY49_10985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JFY49_10985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JFY49_10985 PF11890 Domain of unknown function (DUF3410) JFY49_10995 PF05368 NmrA-like family JFY49_11000 PF01638 HxlR-like helix-turn-helix JFY49_11005 PF01638 HxlR-like helix-turn-helix JFY49_11010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_11020 PF00561 alpha/beta hydrolase fold JFY49_11035 PF00106 short chain dehydrogenase JFY49_11040 PF14765 Polyketide synthase dehydratase JFY49_11040 PF00550 Phosphopantetheine attachment site JFY49_11040 PF08659 KR domain JFY49_11040 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_11040 PF00698 Acyl transferase domain JFY49_11045 PF00248 Aldo/keto reductase family JFY49_11055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_11075 PF03449 Transcription elongation factor, N-terminal JFY49_11075 PF01272 Transcription elongation factor, GreA/GreB, C-term JFY49_11080 PF01464 Transglycosylase SLT domain JFY49_11080 PF00497 Bacterial extracellular solute-binding proteins, family 3 JFY49_11090 PF01171 PP-loop family JFY49_11095 PF01464 Transglycosylase SLT domain JFY49_11095 PF10145 Phage-related minor tail protein JFY49_11095 PF01551 Peptidase family M23 JFY49_11100 PF01435 Peptidase family M48 JFY49_11110 PF00873 AcrB/AcrD/AcrF family JFY49_11115 PF01219 Prokaryotic diacylglycerol kinase JFY49_11120 PF00463 Isocitrate lyase family JFY49_11125 PF03466 LysR substrate binding domain JFY49_11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_11130 PF03471 Transporter associated domain JFY49_11130 PF00571 CBS domain JFY49_11130 PF01595 Cyclin M transmembrane N-terminal domain JFY49_11170 PF00809 Pterin binding enzyme JFY49_11175 PF06480 FtsH Extracellular JFY49_11175 PF17862 AAA+ lid domain JFY49_11175 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_11175 PF01434 Peptidase family M41 JFY49_11180 PF01728 FtsJ-like methyltransferase JFY49_11185 PF01985 CRS1 / YhbY (CRM) domain JFY49_11200 PF00117 Glutamine amidotransferase class-I JFY49_11200 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JFY49_11205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JFY49_11205 PF02142 MGS-like domain JFY49_11205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JFY49_11210 PF03449 Transcription elongation factor, N-terminal JFY49_11210 PF01272 Transcription elongation factor, GreA/GreB, C-term JFY49_11225 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_11245 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JFY49_11250 PF00999 Sodium/hydrogen exchanger family JFY49_11260 PF04228 Putative neutral zinc metallopeptidase JFY49_11265 PF05661 Protein of unknown function (DUF808) JFY49_11270 PF00579 tRNA synthetases class I (W and Y) JFY49_11275 PF01336 OB-fold nucleic acid binding domain JFY49_11275 PF00152 tRNA synthetases class II (D, K and N) JFY49_11280 PF00872 Transposase, Mutator family JFY49_11290 PF00156 Phosphoribosyl transferase domain JFY49_11295 PF00301 Rubredoxin JFY49_11300 PF18113 Rubredoxin binding C-terminal domain JFY49_11300 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_11305 PF00561 alpha/beta hydrolase fold JFY49_11310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_11310 PF03466 LysR substrate binding domain JFY49_11325 PF03050 Transposase IS66 family JFY49_11325 PF13817 IS66 C-terminal element JFY49_11325 PF13007 Transposase C of IS166 homeodomain JFY49_11325 PF13005 zinc-finger binding domain of transposase IS66 JFY49_11330 PF13089 Polyphosphate kinase N-terminal domain JFY49_11330 PF02503 Polyphosphate kinase middle domain JFY49_11330 PF17941 Polyphosphate kinase C-terminal domain 1 JFY49_11330 PF13090 Polyphosphate kinase C-terminal domain 2 JFY49_11335 PF00912 Transglycosylase JFY49_11340 PF01694 Rhomboid family JFY49_11350 PF00005 ABC transporter JFY49_11355 PF13472 GDSL-like Lipase/Acylhydrolase family JFY49_11360 PF00484 Carbonic anhydrase JFY49_11370 PF00561 alpha/beta hydrolase fold JFY49_11380 PF01521 Iron-sulphur cluster biosynthesis JFY49_11380 PF01106 NifU-like domain JFY49_11395 PF01384 Phosphate transporter family JFY49_11400 PF02607 B12 binding domain JFY49_11400 PF02965 Vitamin B12 dependent methionine synthase, activation domain JFY49_11400 PF02310 B12 binding domain JFY49_11400 PF00809 Pterin binding enzyme JFY49_11400 PF02574 Homocysteine S-methyltransferase JFY49_11410 PF17151 Periplasmic sensor domain JFY49_11410 PF00990 Diguanylate cyclase, GGDEF domain JFY49_11415 PF01327 Polypeptide deformylase JFY49_11440 PF00378 Enoyl-CoA hydratase/isomerase JFY49_11465 PF00535 Glycosyl transferase family 2 JFY49_11470 PF01522 Polysaccharide deacetylase JFY49_11470 PF14883 Hypothetical glycosyl hydrolase family 13 JFY49_11475 PF00360 Phytochrome region JFY49_11475 PF00990 Diguanylate cyclase, GGDEF domain JFY49_11475 PF01590 GAF domain JFY49_11475 PF00563 EAL domain JFY49_11480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_11490 PF07152 YaeQ protein JFY49_11495 PF07683 Cobalamin synthesis protein cobW C-terminal domain JFY49_11495 PF02492 CobW/HypB/UreG, nucleotide-binding domain JFY49_11500 PF01494 FAD binding domain JFY49_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_11510 PF03466 LysR substrate binding domain JFY49_11515 PF07690 Major Facilitator Superfamily JFY49_11520 PF16859 Tetracyclin repressor-like, C-terminal domain JFY49_11520 PF00440 Bacterial regulatory proteins, tetR family JFY49_11525 PF03061 Thioesterase superfamily JFY49_11535 PF01734 Patatin-like phospholipase JFY49_11545 PF07690 Major Facilitator Superfamily JFY49_11550 PF12805 FUSC-like inner membrane protein yccS JFY49_11560 PF00258 Flavodoxin JFY49_11560 PF00667 FAD binding domain JFY49_11560 PF00175 Oxidoreductase NAD-binding domain JFY49_11615 PF03734 L,D-transpeptidase catalytic domain JFY49_11615 PF01476 LysM domain JFY49_11620 PF04304 Protein of unknown function (DUF454) JFY49_11640 PF01546 Peptidase family M20/M25/M40 JFY49_11640 PF07687 Peptidase dimerisation domain JFY49_11650 PF02895 Signal transducing histidine kinase, homodimeric domain JFY49_11650 PF00072 Response regulator receiver domain JFY49_11650 PF01627 Hpt domain JFY49_11650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_11650 PF01584 CheW-like domain JFY49_11670 PF01584 CheW-like domain JFY49_11675 PF00072 Response regulator receiver domain JFY49_11680 PF00072 Response regulator receiver domain JFY49_11690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_11695 PF00873 AcrB/AcrD/AcrF family JFY49_11700 PF04073 Aminoacyl-tRNA editing domain JFY49_11700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JFY49_11700 PF03129 Anticodon binding domain JFY49_11740 PF00692 dUTPase JFY49_11760 PF10609 NUBPL iron-transfer P-loop NTPase JFY49_11780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JFY49_11780 PF00355 Rieske [2Fe-2S] domain JFY49_11785 PF00866 Ring hydroxylating beta subunit JFY49_11790 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JFY49_11800 PF00171 Aldehyde dehydrogenase family JFY49_11805 PF00202 Aminotransferase class-III JFY49_11815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JFY49_11815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JFY49_11820 PF00392 Bacterial regulatory proteins, gntR family JFY49_11820 PF00155 Aminotransferase class I and II JFY49_11825 PF00324 Amino acid permease JFY49_11835 PF00271 Helicase conserved C-terminal domain JFY49_11835 PF00270 DEAD/DEAH box helicase JFY49_11835 PF16124 RecQ zinc-binding JFY49_11835 PF09382 RQC domain JFY49_11835 PF00570 HRDC domain JFY49_11855 PF03793 PASTA domain JFY49_11855 PF00069 Protein kinase domain JFY49_11935 PF08241 Methyltransferase domain JFY49_11970 PF13613 Helix-turn-helix of DDE superfamily endonuclease JFY49_11970 PF13359 DDE superfamily endonuclease JFY49_12035 PF00589 Phage integrase family JFY49_12035 PF13356 Arm DNA-binding domain JFY49_12040 PF13737 Transposase DDE domain JFY49_12065 PF07690 Major Facilitator Superfamily JFY49_12070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_12070 PF00529 HlyD membrane-fusion protein of T1SS JFY49_12075 PF03061 Thioesterase superfamily JFY49_12080 PF00490 Delta-aminolevulinic acid dehydratase JFY49_12085 PF01266 FAD dependent oxidoreductase JFY49_12090 PF08338 Domain of unknown function (DUF1731) JFY49_12090 PF01370 NAD dependent epimerase/dehydratase family JFY49_12110 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_12130 PF05552 Conserved TM helix JFY49_12145 PF00175 Oxidoreductase NAD-binding domain JFY49_12145 PF00970 Oxidoreductase FAD-binding domain JFY49_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_12150 PF03466 LysR substrate binding domain JFY49_12155 PF00313 'Cold-shock' DNA-binding domain JFY49_12170 PF00361 Proton-conducting membrane transporter JFY49_12175 PF00361 Proton-conducting membrane transporter JFY49_12180 PF00361 Proton-conducting membrane transporter JFY49_12180 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JFY49_12185 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JFY49_12190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JFY49_12195 PF12838 4Fe-4S dicluster domain JFY49_12200 PF00146 NADH dehydrogenase JFY49_12205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JFY49_12205 PF00384 Molybdopterin oxidoreductase JFY49_12205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JFY49_12210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JFY49_12210 PF10531 SLBB domain JFY49_12210 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JFY49_12220 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JFY49_12220 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JFY49_12225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JFY49_12230 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JFY49_12240 PF00672 HAMP domain JFY49_12240 PF00512 His Kinase A (phospho-acceptor) domain JFY49_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_12245 PF00486 Transcriptional regulatory protein, C terminal JFY49_12245 PF00072 Response regulator receiver domain JFY49_12250 PF00317 Ribonucleotide reductase, all-alpha domain JFY49_12250 PF02867 Ribonucleotide reductase, barrel domain JFY49_12250 PF03477 ATP cone domain JFY49_12265 PF00268 Ribonucleotide reductase, small chain JFY49_12275 PF05656 Protein of unknown function (DUF805) JFY49_12285 PF05154 TM2 domain JFY49_12295 PF12697 Alpha/beta hydrolase family JFY49_12305 PF04972 BON domain JFY49_12305 PF01476 LysM domain JFY49_12310 PF00550 Phosphopantetheine attachment site JFY49_12320 PF00698 Acyl transferase domain JFY49_12325 PF01783 Ribosomal L32p protein family JFY49_12330 PF02620 Large ribosomal RNA subunit accumulation protein YceD JFY49_12335 PF04315 Elongation factor P hydroxylase JFY49_12340 PF01300 Telomere recombination JFY49_12355 PF02616 Segregation and condensation protein ScpA JFY49_12360 PF04079 Segregation and condensation complex subunit ScpB JFY49_12365 PF00849 RNA pseudouridylate synthase JFY49_12365 PF01479 S4 domain JFY49_12380 PF00155 Aminotransferase class I and II JFY49_12385 PF06968 Biotin and Thiamin Synthesis associated domain JFY49_12385 PF00202 Aminotransferase class-III JFY49_12385 PF04055 Radical SAM superfamily JFY49_12395 PF00578 AhpC/TSA family JFY49_12400 PF00210 Ferritin-like domain JFY49_12405 PF05971 RNA methyltransferase JFY49_12410 PF00533 BRCA1 C Terminus (BRCT) domain JFY49_12410 PF12826 Helix-hairpin-helix motif JFY49_12410 PF03120 NAD-dependent DNA ligase OB-fold domain JFY49_12410 PF01653 NAD-dependent DNA ligase adenylation domain JFY49_12410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JFY49_12420 PF02463 RecF/RecN/SMC N terminal domain JFY49_12420 PF06470 SMC proteins Flexible Hinge Domain JFY49_12430 PF01925 Sulfite exporter TauE/SafE JFY49_12440 PF03309 Type III pantothenate kinase JFY49_12450 PF02881 SRP54-type protein, helical bundle domain JFY49_12450 PF02978 Signal peptide binding domain JFY49_12450 PF00448 SRP54-type protein, GTPase domain JFY49_12460 PF00440 Bacterial regulatory proteins, tetR family JFY49_12460 PF17932 Tetracyclin repressor-like, C-terminal domain JFY49_12470 PF01207 Dihydrouridine synthase (Dus) JFY49_12475 PF08378 Nuclease-related domain JFY49_12480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JFY49_12480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JFY49_12485 PF00893 Small Multidrug Resistance protein JFY49_12495 PF07732 Multicopper oxidase JFY49_12495 PF00394 Multicopper oxidase JFY49_12495 PF07731 Multicopper oxidase JFY49_12505 PF00834 Ribulose-phosphate 3 epimerase family JFY49_12510 PF00756 Putative esterase JFY49_12520 PF04445 Putative SAM-dependent methyltransferase JFY49_12525 PF02673 Bacitracin resistance protein BacA JFY49_12530 PF00814 Glycoprotease family JFY49_12535 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_12540 PF00293 NUDIX domain JFY49_12580 PF00425 chorismate binding enzyme JFY49_12580 PF04715 Anthranilate synthase component I, N terminal region JFY49_12585 PF00155 Aminotransferase class I and II JFY49_12590 PF00815 Histidinol dehydrogenase JFY49_12595 PF01634 ATP phosphoribosyltransferase JFY49_12600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JFY49_12605 PF01722 BolA-like protein JFY49_12610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JFY49_12615 PF04552 Sigma-54, DNA binding domain JFY49_12615 PF04963 Sigma-54 factor, core binding domain JFY49_12615 PF00309 Sigma-54 factor, Activator interacting domain (AID) JFY49_12620 PF13005 zinc-finger binding domain of transposase IS66 JFY49_12620 PF13007 Transposase C of IS166 homeodomain JFY49_12620 PF13817 IS66 C-terminal element JFY49_12620 PF03050 Transposase IS66 family JFY49_12680 PF02445 Quinolinate synthetase A protein JFY49_12685 PF01960 ArgJ family JFY49_12695 PF07517 SecA DEAD-like domain JFY49_12695 PF01043 SecA preprotein cross-linking domain JFY49_12695 PF02810 SEC-C motif JFY49_12695 PF07516 SecA Wing and Scaffold domain JFY49_12700 PF00578 AhpC/TSA family JFY49_12700 PF10417 C-terminal domain of 1-Cys peroxiredoxin JFY49_12705 PF00753 Metallo-beta-lactamase superfamily JFY49_12720 PF08245 Mur ligase middle domain JFY49_12720 PF02875 Mur ligase family, glutamate ligase domain JFY49_12725 PF01039 Carboxyl transferase domain JFY49_12730 PF00290 Tryptophan synthase alpha chain JFY49_12735 PF12833 Helix-turn-helix domain JFY49_12735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JFY49_12740 PF13411 MerR HTH family regulatory protein JFY49_12740 PF00145 C-5 cytosine-specific DNA methylase JFY49_12745 PF12323 Helix-turn-helix domain JFY49_12745 PF01385 Probable transposase JFY49_12745 PF07282 Putative transposase DNA-binding domain JFY49_12780 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_12785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JFY49_12790 PF07715 TonB-dependent Receptor Plug Domain JFY49_12790 PF00593 TonB dependent receptor JFY49_12795 PF01923 Cobalamin adenosyltransferase JFY49_12845 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JFY49_12855 PF00072 Response regulator receiver domain JFY49_12855 PF00486 Transcriptional regulatory protein, C terminal JFY49_12860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_12860 PF00512 His Kinase A (phospho-acceptor) domain JFY49_12860 PF00672 HAMP domain JFY49_12870 PF12806 Acetyl-CoA dehydrogenase C-terminal like JFY49_12870 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_12870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_12870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_12875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_12875 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_12875 PF12806 Acetyl-CoA dehydrogenase C-terminal like JFY49_12875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_12890 PF06146 Phosphate-starvation-inducible E JFY49_12910 PF07715 TonB-dependent Receptor Plug Domain JFY49_12910 PF00593 TonB dependent receptor JFY49_12925 PF01336 OB-fold nucleic acid binding domain JFY49_12925 PF02938 GAD domain JFY49_12925 PF00152 tRNA synthetases class II (D, K and N) JFY49_12940 PF00534 Glycosyl transferases group 1 JFY49_12940 PF09318 Glycosyl transferase 1 domain A JFY49_12945 PF00535 Glycosyl transferase family 2 JFY49_12950 PF00132 Bacterial transferase hexapeptide (six repeats) JFY49_12955 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JFY49_12960 PF00483 Nucleotidyl transferase JFY49_12965 PF16363 GDP-mannose 4,6 dehydratase JFY49_12970 PF00534 Glycosyl transferases group 1 JFY49_12980 PF00535 Glycosyl transferase family 2 JFY49_12985 PF01522 Polysaccharide deacetylase JFY49_12995 PF12323 Helix-turn-helix domain JFY49_12995 PF07282 Putative transposase DNA-binding domain JFY49_12995 PF01385 Probable transposase JFY49_13000 PF01063 Amino-transferase class IV JFY49_13005 PF03710 Glutamate-ammonia ligase adenylyltransferase JFY49_13005 PF08335 GlnD PII-uridylyltransferase JFY49_13015 PF07282 Putative transposase DNA-binding domain JFY49_13015 PF01385 Probable transposase JFY49_13015 PF12323 Helix-turn-helix domain JFY49_13020 PF13188 PAS domain JFY49_13020 PF00512 His Kinase A (phospho-acceptor) domain JFY49_13020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_13020 PF00989 PAS fold JFY49_13030 PF03971 Monomeric isocitrate dehydrogenase JFY49_13050 PF02547 Queuosine biosynthesis protein JFY49_13060 PF04011 LemA family JFY49_13065 PF01702 Queuine tRNA-ribosyltransferase JFY49_13070 PF02699 Preprotein translocase subunit JFY49_13075 PF13721 SecD export protein N-terminal TM region JFY49_13075 PF02355 Protein export membrane protein JFY49_13075 PF07549 SecD/SecF GG Motif JFY49_13080 PF07549 SecD/SecF GG Motif JFY49_13080 PF02355 Protein export membrane protein JFY49_13090 PF02801 Beta-ketoacyl synthase, C-terminal domain JFY49_13090 PF00109 Beta-ketoacyl synthase, N-terminal domain JFY49_13105 PF00109 Beta-ketoacyl synthase, N-terminal domain JFY49_13105 PF02801 Beta-ketoacyl synthase, C-terminal domain JFY49_13115 PF04820 Tryptophan halogenase JFY49_13135 PF00221 Aromatic amino acid lyase JFY49_13160 PF00550 Phosphopantetheine attachment site JFY49_13165 PF00550 Phosphopantetheine attachment site JFY49_13180 PF04607 Region found in RelA / SpoT proteins JFY49_13180 PF02824 TGS domain JFY49_13180 PF13291 ACT domain JFY49_13185 PF05958 tRNA (Uracil-5-)-methyltransferase JFY49_13195 PF00291 Pyridoxal-phosphate dependent enzyme JFY49_13200 PF00072 Response regulator receiver domain JFY49_13200 PF01627 Hpt domain JFY49_13200 PF00512 His Kinase A (phospho-acceptor) domain JFY49_13200 PF00672 HAMP domain JFY49_13200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JFY49_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_13205 PF00378 Enoyl-CoA hydratase/isomerase JFY49_13210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JFY49_13210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JFY49_13215 PF01261 Xylose isomerase-like TIM barrel JFY49_13240 PF00672 HAMP domain JFY49_13240 PF00909 Ammonium Transporter Family JFY49_13245 PF02233 NAD(P) transhydrogenase beta subunit JFY49_13250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JFY49_13255 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JFY49_13255 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JFY49_13270 PF03050 Transposase IS66 family JFY49_13270 PF13007 Transposase C of IS166 homeodomain JFY49_13270 PF13817 IS66 C-terminal element JFY49_13270 PF13005 zinc-finger binding domain of transposase IS66 JFY49_13300 PF11867 Domain of unknown function (DUF3387) JFY49_13300 PF18766 SWI2/SNF2 ATPase JFY49_13300 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JFY49_13315 PF01420 Type I restriction modification DNA specificity domain JFY49_13320 PF17191 RecG wedge domain JFY49_13320 PF00270 DEAD/DEAH box helicase JFY49_13320 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JFY49_13325 PF02384 N-6 DNA Methylase JFY49_13375 PF00589 Phage integrase family JFY49_13380 PF01207 Dihydrouridine synthase (Dus) JFY49_13390 PF02441 Flavoprotein JFY49_13390 PF04127 DNA / pantothenate metabolism flavoprotein JFY49_13395 PF04002 RadC-like JAB domain JFY49_13400 PF01062 Bestrophin, RFP-TM, chloride channel JFY49_13405 PF02811 PHP domain JFY49_13410 PF04279 Intracellular septation protein A JFY49_13425 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JFY49_13425 PF01266 FAD dependent oxidoreductase JFY49_13435 PF04461 Protein of unknown function (DUF520) JFY49_13445 PF03061 Thioesterase superfamily JFY49_13450 PF00085 Thioredoxin JFY49_13460 PF00753 Metallo-beta-lactamase superfamily JFY49_13460 PF04273 Putative phosphatase (DUF442) JFY49_13475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JFY49_13475 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_13475 PF00403 Heavy-metal-associated domain JFY49_13490 PF03050 Transposase IS66 family JFY49_13490 PF13007 Transposase C of IS166 homeodomain JFY49_13490 PF13817 IS66 C-terminal element JFY49_13490 PF13005 zinc-finger binding domain of transposase IS66 JFY49_13525 PF01066 CDP-alcohol phosphatidyltransferase JFY49_13530 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JFY49_13555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JFY49_13555 PF00056 lactate/malate dehydrogenase, NAD binding domain JFY49_13565 PF13007 Transposase C of IS166 homeodomain JFY49_13565 PF13817 IS66 C-terminal element JFY49_13565 PF03050 Transposase IS66 family JFY49_13565 PF13005 zinc-finger binding domain of transposase IS66 JFY49_13590 PF01464 Transglycosylase SLT domain JFY49_13590 PF01551 Peptidase family M23 JFY49_13590 PF10145 Phage-related minor tail protein JFY49_13595 PF04055 Radical SAM superfamily JFY49_13595 PF01938 TRAM domain JFY49_13595 PF00919 Uncharacterized protein family UPF0004 JFY49_13600 PF02562 PhoH-like protein JFY49_13605 PF02130 Uncharacterized protein family UPF0054 JFY49_13655 PF03358 NADPH-dependent FMN reductase JFY49_13660 PF03631 Virulence factor BrkB JFY49_13665 PF01557 Fumarylacetoacetate (FAA) hydrolase family JFY49_13695 PF00773 RNB domain JFY49_13695 PF00575 S1 RNA binding domain JFY49_13695 PF17876 Cold shock domain JFY49_13695 PF08461 Ribonuclease R winged-helix domain JFY49_13695 PF08206 Ribonuclease B OB domain JFY49_13700 PF01432 Peptidase family M3 JFY49_13705 PF09526 Probable metal-binding protein (DUF2387) JFY49_13715 PF00892 EamA-like transporter family JFY49_13740 PF03937 Flavinator of succinate dehydrogenase JFY49_13745 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_13745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_13745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_13750 PF00743 Flavin-binding monooxygenase-like JFY49_13765 PF13007 Transposase C of IS166 homeodomain JFY49_13765 PF03050 Transposase IS66 family JFY49_13765 PF13005 zinc-finger binding domain of transposase IS66 JFY49_13765 PF13817 IS66 C-terminal element JFY49_13770 PF01196 Ribosomal protein L17 JFY49_13775 PF01000 RNA polymerase Rpb3/RpoA insert domain JFY49_13775 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JFY49_13775 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JFY49_13780 PF01479 S4 domain JFY49_13780 PF00163 Ribosomal protein S4/S9 N-terminal domain JFY49_13785 PF00411 Ribosomal protein S11 JFY49_13790 PF00416 Ribosomal protein S13/S18 JFY49_13795 PF00444 Ribosomal protein L36 JFY49_13800 PF00344 SecY translocase JFY49_13805 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JFY49_13810 PF00327 Ribosomal protein L30p/L7e JFY49_13815 PF03719 Ribosomal protein S5, C-terminal domain JFY49_13815 PF00333 Ribosomal protein S5, N-terminal domain JFY49_13820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JFY49_13825 PF00347 Ribosomal protein L6 JFY49_13830 PF00410 Ribosomal protein S8 JFY49_13835 PF00253 Ribosomal protein S14p/S29e JFY49_13840 PF00281 Ribosomal protein L5 JFY49_13840 PF00673 ribosomal L5P family C-terminus JFY49_13845 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JFY49_13845 PF00467 KOW motif JFY49_13850 PF00238 Ribosomal protein L14p/L23e JFY49_13855 PF00366 Ribosomal protein S17 JFY49_13860 PF00831 Ribosomal L29 protein JFY49_13865 PF00252 Ribosomal protein L16p/L10e JFY49_13870 PF07650 KH domain JFY49_13870 PF00189 Ribosomal protein S3, C-terminal domain JFY49_13875 PF00237 Ribosomal protein L22p/L17e JFY49_13880 PF00203 Ribosomal protein S19 JFY49_13885 PF00181 Ribosomal Proteins L2, RNA binding domain JFY49_13885 PF03947 Ribosomal Proteins L2, C-terminal domain JFY49_13890 PF00276 Ribosomal protein L23 JFY49_13895 PF00573 Ribosomal protein L4/L1 family JFY49_13900 PF00297 Ribosomal protein L3 JFY49_13905 PF00338 Ribosomal protein S10p/S20e JFY49_13910 PF00117 Glutamine amidotransferase class-I JFY49_13915 PF01053 Cys/Met metabolism PLP-dependent enzyme JFY49_13920 PF00970 Oxidoreductase FAD-binding domain JFY49_13920 PF00042 Globin JFY49_13920 PF00175 Oxidoreductase NAD-binding domain JFY49_13925 PF02082 Transcriptional regulator JFY49_13930 PF01926 50S ribosome-binding GTPase JFY49_13940 PF00375 Sodium:dicarboxylate symporter family JFY49_13950 PF01553 Acyltransferase JFY49_13965 PF00270 DEAD/DEAH box helicase JFY49_13965 PF17191 RecG wedge domain JFY49_13965 PF00271 Helicase conserved C-terminal domain JFY49_13970 PF00156 Phosphoribosyl transferase domain JFY49_13980 PF03641 Possible lysine decarboxylase JFY49_13985 PF01544 CorA-like Mg2+ transporter protein JFY49_14000 PF02470 MlaD protein JFY49_14005 PF02405 Permease MlaE JFY49_14010 PF00005 ABC transporter JFY49_14015 PF00270 DEAD/DEAH box helicase JFY49_14015 PF00271 Helicase conserved C-terminal domain JFY49_14020 PF00459 Inositol monophosphatase family JFY49_14025 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JFY49_14025 PF02779 Transketolase, pyrimidine binding domain JFY49_14025 PF02780 Transketolase, C-terminal domain JFY49_14030 PF00925 GTP cyclohydrolase II JFY49_14035 PF06969 HemN C-terminal domain JFY49_14035 PF04055 Radical SAM superfamily JFY49_14040 PF01218 Coproporphyrinogen III oxidase JFY49_14050 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JFY49_14050 PF01488 Shikimate / quinate 5-dehydrogenase JFY49_14050 PF08501 Shikimate dehydrogenase substrate binding domain JFY49_14065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JFY49_14065 PF12806 Acetyl-CoA dehydrogenase C-terminal like JFY49_14065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_14065 PF02770 Acyl-CoA dehydrogenase, middle domain JFY49_14070 PF00313 'Cold-shock' DNA-binding domain JFY49_14075 PF04055 Radical SAM superfamily JFY49_14075 PF06969 HemN C-terminal domain JFY49_14085 PF01554 MatE JFY49_14090 PF03109 ABC1 family JFY49_14095 PF01197 Ribosomal protein L31 JFY49_14100 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JFY49_14140 PF01385 Probable transposase JFY49_14140 PF12323 Helix-turn-helix domain JFY49_14140 PF07282 Putative transposase DNA-binding domain JFY49_14150 PF01209 ubiE/COQ5 methyltransferase family JFY49_14160 PF13614 AAA domain JFY49_14165 PF01594 AI-2E family transporter JFY49_14170 PF00080 Copper/zinc superoxide dismutase (SODC) JFY49_14175 PF12823 Domain of unknown function (DUF3817) JFY49_14180 PF07690 Major Facilitator Superfamily JFY49_14195 PF02913 FAD linked oxidases, C-terminal domain JFY49_14195 PF01565 FAD binding domain JFY49_14200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JFY49_14200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JFY49_14205 PF00892 EamA-like transporter family JFY49_14215 PF01925 Sulfite exporter TauE/SafE JFY49_14220 PF16198 tRNA pseudouridylate synthase B C-terminal domain JFY49_14220 PF09157 Pseudouridine synthase II TruB, C-terminal JFY49_14220 PF01509 TruB family pseudouridylate synthase (N terminal domain) JFY49_14225 PF03280 Proteobacterial lipase chaperone protein JFY49_14230 PF00561 alpha/beta hydrolase fold JFY49_14235 PF00561 alpha/beta hydrolase fold JFY49_14240 PF01245 Ribosomal protein L19 JFY49_14245 PF01746 tRNA (Guanine-1)-methyltransferase JFY49_14250 PF01782 RimM N-terminal domain JFY49_14250 PF05239 PRC-barrel domain JFY49_14255 PF00886 Ribosomal protein S16 JFY49_14300 PF00114 Pilin (bacterial filament) JFY49_14300 PF07963 Prokaryotic N-terminal methylation motif JFY49_14305 PF02401 LytB protein JFY49_14310 PF00625 Guanylate kinase JFY49_14315 PF01192 RNA polymerase Rpb6 JFY49_14320 PF02824 TGS domain JFY49_14320 PF04607 Region found in RelA / SpoT proteins JFY49_14320 PF13291 ACT domain JFY49_14325 PF01042 Endoribonuclease L-PSP JFY49_14330 PF04324 BFD-like [2Fe-2S] binding domain JFY49_14335 PF00210 Ferritin-like domain JFY49_14340 PF15864 Protein glycosylation ligase JFY49_14340 PF04932 O-Antigen ligase JFY49_14340 PF11846 Virulence factor membrane-bound polymerase, C-terminal JFY49_14355 PF11846 Virulence factor membrane-bound polymerase, C-terminal JFY49_14355 PF15864 Protein glycosylation ligase JFY49_14355 PF04932 O-Antigen ligase JFY49_14365 PF07963 Prokaryotic N-terminal methylation motif JFY49_14365 PF00114 Pilin (bacterial filament) JFY49_14380 PF04536 TPM domain JFY49_14385 PF04011 LemA family JFY49_14395 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JFY49_14395 PF07992 Pyridine nucleotide-disulphide oxidoreductase JFY49_14400 PF00310 Glutamine amidotransferases class-II JFY49_14400 PF01493 GXGXG motif JFY49_14400 PF01645 Conserved region in glutamate synthase JFY49_14400 PF04898 Glutamate synthase central domain JFY49_14410 PF01761 3-dehydroquinate synthase JFY49_14415 PF01202 Shikimate kinase JFY49_14420 PF11741 AMIN domain JFY49_14420 PF07660 Secretin and TonB N terminus short domain JFY49_14420 PF00263 Bacterial type II and III secretion system protein JFY49_14420 PF03958 Bacterial type II/III secretion system short domain JFY49_14430 PF04350 Pilus assembly protein, PilO JFY49_14435 PF05137 Fimbrial assembly protein (PilN) JFY49_14440 PF11104 Type IV pilus assembly protein PilM; JFY49_14455 PF00912 Transglycosylase JFY49_14455 PF00905 Penicillin binding protein transpeptidase domain JFY49_14455 PF17092 Penicillin-binding protein OB-like domain JFY49_14460 PF13847 Methyltransferase domain JFY49_14465 PF00953 Glycosyl transferase family 4 JFY49_14470 PF08245 Mur ligase middle domain JFY49_14470 PF02875 Mur ligase family, glutamate ligase domain JFY49_14470 PF01225 Mur ligase family, catalytic domain JFY49_14475 PF08245 Mur ligase middle domain JFY49_14475 PF01225 Mur ligase family, catalytic domain JFY49_14475 PF02875 Mur ligase family, glutamate ligase domain JFY49_14480 PF00905 Penicillin binding protein transpeptidase domain JFY49_14480 PF03717 Penicillin-binding Protein dimerisation domain JFY49_14490 PF01795 MraW methylase family JFY49_14495 PF03050 Transposase IS66 family JFY49_14495 PF13817 IS66 C-terminal element JFY49_14495 PF13007 Transposase C of IS166 homeodomain JFY49_14495 PF13005 zinc-finger binding domain of transposase IS66 JFY49_14510 PF13358 DDE superfamily endonuclease JFY49_14535 PF07282 Putative transposase DNA-binding domain JFY49_14535 PF01385 Probable transposase JFY49_14535 PF12323 Helix-turn-helix domain JFY49_14550 PF00749 tRNA synthetases class I (E and Q), catalytic domain JFY49_14570 PF01545 Cation efflux family JFY49_14580 PF12848 ABC transporter JFY49_14580 PF00005 ABC transporter JFY49_14585 PF01053 Cys/Met metabolism PLP-dependent enzyme JFY49_14590 PF00106 short chain dehydrogenase JFY49_14600 PF09371 Tex-like protein N-terminal domain JFY49_14600 PF00575 S1 RNA binding domain JFY49_14600 PF17674 HHH domain JFY49_14600 PF16921 Tex protein YqgF-like domain JFY49_14605 PF00486 Transcriptional regulatory protein, C terminal JFY49_14605 PF00072 Response regulator receiver domain JFY49_14610 PF00672 HAMP domain JFY49_14610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_14610 PF00512 His Kinase A (phospho-acceptor) domain JFY49_14615 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JFY49_14615 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JFY49_14630 PF01323 DSBA-like thioredoxin domain JFY49_14665 PF00183 Hsp90 protein JFY49_14665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_14675 PF03922 OmpW family JFY49_14680 PF13726 Na+-H+ antiporter family JFY49_14680 PF03553 Na+/H+ antiporter family JFY49_14685 PF00561 alpha/beta hydrolase fold JFY49_14705 PF04983 RNA polymerase Rpb1, domain 3 JFY49_14705 PF00623 RNA polymerase Rpb1, domain 2 JFY49_14705 PF04997 RNA polymerase Rpb1, domain 1 JFY49_14705 PF04998 RNA polymerase Rpb1, domain 5 JFY49_14705 PF05000 RNA polymerase Rpb1, domain 4 JFY49_14710 PF04560 RNA polymerase Rpb2, domain 7 JFY49_14710 PF04563 RNA polymerase beta subunit JFY49_14710 PF04561 RNA polymerase Rpb2, domain 2 JFY49_14710 PF04565 RNA polymerase Rpb2, domain 3 JFY49_14710 PF10385 RNA polymerase beta subunit external 1 domain JFY49_14710 PF00562 RNA polymerase Rpb2, domain 6 JFY49_14715 PF16320 Ribosomal protein L7/L12 dimerisation domain JFY49_14715 PF00542 Ribosomal protein L7/L12 C-terminal domain JFY49_14720 PF00466 Ribosomal protein L10 JFY49_14725 PF00687 Ribosomal protein L1p/L10e family JFY49_14730 PF03946 Ribosomal protein L11, N-terminal domain JFY49_14730 PF00298 Ribosomal protein L11, RNA binding domain JFY49_14735 PF02357 Transcription termination factor nusG JFY49_14735 PF00467 KOW motif JFY49_14740 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JFY49_14750 PF03144 Elongation factor Tu domain 2 JFY49_14750 PF00009 Elongation factor Tu GTP binding domain JFY49_14750 PF03143 Elongation factor Tu C-terminal domain JFY49_14775 PF00425 chorismate binding enzyme JFY49_14775 PF04715 Anthranilate synthase component I, N terminal region JFY49_14780 PF13419 Haloacid dehalogenase-like hydrolase JFY49_14785 PF12401 Protein of unknown function (DUF2662) JFY49_14785 PF00498 FHA domain JFY49_14790 PF03958 Bacterial type II/III secretion system short domain JFY49_14790 PF00263 Bacterial type II and III secretion system protein JFY49_14805 PF00816 H-NS histone family JFY49_14825 PF02602 Uroporphyrinogen-III synthase HemD JFY49_14830 PF03900 Porphobilinogen deaminase, C-terminal domain JFY49_14830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JFY49_14835 PF00072 Response regulator receiver domain JFY49_14835 PF04397 LytTr DNA-binding domain JFY49_14840 PF06580 Histidine kinase JFY49_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_14840 PF07694 5TMR of 5TMR-LYT JFY49_14845 PF00206 Lyase JFY49_14845 PF14698 Argininosuccinate lyase C-terminal JFY49_14850 PF04362 Bacterial Fe(2+) trafficking JFY49_14855 PF01066 CDP-alcohol phosphatidyltransferase JFY49_14865 PF08459 UvrC Helix-hairpin-helix N-terminal JFY49_14865 PF01541 GIY-YIG catalytic domain JFY49_14865 PF02151 UvrB/uvrC motif JFY49_14870 PF07724 AAA domain (Cdc48 subfamily) JFY49_14870 PF10431 C-terminal, D2-small domain, of ClpB protein JFY49_14875 PF00378 Enoyl-CoA hydratase/isomerase JFY49_14875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JFY49_14875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JFY49_14880 PF02803 Thiolase, C-terminal domain JFY49_14880 PF00108 Thiolase, N-terminal domain JFY49_14890 PF09313 Domain of unknown function (DUF1971) JFY49_14890 PF03848 Tellurite resistance protein TehB JFY49_14940 PF00475 Imidazoleglycerol-phosphate dehydratase JFY49_14945 PF00117 Glutamine amidotransferase class-I JFY49_14955 PF00977 Histidine biosynthesis protein JFY49_14965 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JFY49_14965 PF01266 FAD dependent oxidoreductase JFY49_14970 PF00324 Amino acid permease JFY49_14985 PF00313 'Cold-shock' DNA-binding domain JFY49_14990 PF01636 Phosphotransferase enzyme family JFY49_14995 PF00977 Histidine biosynthesis protein JFY49_15005 PF12833 Helix-turn-helix domain JFY49_15005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JFY49_15025 PF02705 K+ potassium transporter JFY49_15035 PF00589 Phage integrase family JFY49_15035 PF13356 Arm DNA-binding domain JFY49_15080 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JFY49_15080 PF08463 EcoEI R protein C-terminal JFY49_15080 PF00271 Helicase conserved C-terminal domain JFY49_15080 PF04851 Type III restriction enzyme, res subunit JFY49_15095 PF00589 Phage integrase family JFY49_15095 PF13356 Arm DNA-binding domain JFY49_15110 PF09669 Phage regulatory protein Rha (Phage_pRha) JFY49_15110 PF10549 ORF11CD3 domain JFY49_15125 PF03796 DnaB-like helicase C terminal domain JFY49_15125 PF00772 DnaB-like helicase N terminal domain JFY49_15185 PF13742 OB-fold nucleic acid binding domain JFY49_15185 PF02601 Exonuclease VII, large subunit JFY49_15225 PF01593 Flavin containing amine oxidoreductase JFY49_15230 PF05726 Pirin C-terminal cupin domain JFY49_15230 PF02678 Pirin JFY49_15235 PF00578 AhpC/TSA family JFY49_15235 PF10417 C-terminal domain of 1-Cys peroxiredoxin JFY49_15240 PF00436 Single-strand binding protein family JFY49_15245 PF07690 Major Facilitator Superfamily JFY49_15255 PF03070 TENA/THI-4/PQQC family JFY49_15270 PF17755 UvrA DNA-binding domain JFY49_15270 PF00005 ABC transporter JFY49_15270 PF17760 UvrA interaction domain JFY49_15285 PF00990 Diguanylate cyclase, GGDEF domain JFY49_15285 PF00072 Response regulator receiver domain JFY49_15300 PF00474 Sodium:solute symporter family JFY49_15305 PF04341 Protein of unknown function, DUF485 JFY49_15310 PF00512 His Kinase A (phospho-acceptor) domain JFY49_15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_15310 PF00072 Response regulator receiver domain JFY49_15310 PF09456 RcsC Alpha-Beta-Loop (ABL) JFY49_15320 PF00072 Response regulator receiver domain JFY49_15320 PF00196 Bacterial regulatory proteins, luxR family JFY49_15325 PF03358 NADPH-dependent FMN reductase JFY49_15330 PF00296 Luciferase-like monooxygenase JFY49_15335 PF07995 Glucose / Sorbosone dehydrogenase JFY49_15340 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JFY49_15340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JFY49_15345 PF13193 AMP-binding enzyme C-terminal domain JFY49_15345 PF00501 AMP-binding enzyme JFY49_15345 PF16177 Acetyl-coenzyme A synthetase N-terminus JFY49_15355 PF00924 Mechanosensitive ion channel JFY49_15360 PF04452 RNA methyltransferase JFY49_15365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JFY49_15370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JFY49_15395 PF01368 DHH family JFY49_15395 PF02272 DHHA1 domain JFY49_15395 PF17768 RecJ OB domain JFY49_15400 PF01243 Pyridoxamine 5'-phosphate oxidase JFY49_15400 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JFY49_15405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JFY49_15405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JFY49_15405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JFY49_15405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JFY49_15410 PF00478 IMP dehydrogenase / GMP reductase domain JFY49_15410 PF00571 CBS domain JFY49_15415 PF03692 Putative zinc- or iron-chelating domain JFY49_15420 PF01613 Flavin reductase like domain JFY49_15420 PF00258 Flavodoxin JFY49_15425 PF01169 Uncharacterized protein family UPF0016 JFY49_15430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JFY49_15430 PF00364 Biotin-requiring enzyme JFY49_15430 PF02817 e3 binding domain JFY49_15435 PF00456 Transketolase, thiamine diphosphate binding domain JFY49_15435 PF17831 Pyruvate dehydrogenase E1 component middle domain JFY49_15450 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JFY49_15455 PF12327 FtsZ family, C-terminal domain JFY49_15455 PF00091 Tubulin/FtsZ family, GTPase domain JFY49_15460 PF02491 SHS2 domain inserted in FTSA JFY49_15465 PF03799 Cell division protein FtsQ JFY49_15465 PF08478 POTRA domain, FtsQ-type JFY49_15470 PF01820 D-ala D-ala ligase N-terminus JFY49_15470 PF07478 D-ala D-ala ligase C-terminus JFY49_15475 PF01225 Mur ligase family, catalytic domain JFY49_15475 PF08245 Mur ligase middle domain JFY49_15475 PF02875 Mur ligase family, glutamate ligase domain JFY49_15480 PF04101 Glycosyltransferase family 28 C-terminal domain JFY49_15480 PF03033 Glycosyltransferase family 28 N-terminal domain JFY49_15485 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JFY49_15485 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JFY49_15500 PF00156 Phosphoribosyl transferase domain JFY49_15505 PF03372 Endonuclease/Exonuclease/phosphatase family JFY49_15510 PF03960 ArsC family JFY49_15520 PF07859 alpha/beta hydrolase fold JFY49_15525 PF02525 Flavodoxin-like fold JFY49_15530 PF08448 PAS fold JFY49_15530 PF00990 Diguanylate cyclase, GGDEF domain JFY49_15535 PF14497 Glutathione S-transferase, C-terminal domain JFY49_15535 PF02798 Glutathione S-transferase, N-terminal domain JFY49_15540 PF02683 Cytochrome C biogenesis protein transmembrane region JFY49_15540 PF11412 Disulphide bond corrector protein DsbC JFY49_15560 PF03502 Nucleoside-specific channel-forming protein, Tsx JFY49_15570 PF00204 DNA gyrase B JFY49_15570 PF00986 DNA gyrase B subunit, carboxyl terminus JFY49_15570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_15570 PF01751 Toprim domain JFY49_15575 PF05728 Uncharacterised protein family (UPF0227) JFY49_15585 PF02600 Disulfide bond formation protein DsbB JFY49_15590 PF04262 Glutamate-cysteine ligase JFY49_15605 PF04286 Protein of unknown function (DUF445) JFY49_15610 PF05746 DALR anticodon binding domain JFY49_15610 PF03485 Arginyl tRNA synthetase N terminal domain JFY49_15610 PF00750 tRNA synthetases class I (R) JFY49_15620 PF02666 Phosphatidylserine decarboxylase JFY49_15625 PF00581 Rhodanese-like domain JFY49_15630 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JFY49_15630 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JFY49_15635 PF02580 D-Tyr-tRNA(Tyr) deacylase JFY49_15665 PF01758 Sodium Bile acid symporter family JFY49_15670 PF00857 Isochorismatase family JFY49_15675 PF07690 Major Facilitator Superfamily JFY49_15680 PF00701 Dihydrodipicolinate synthetase family JFY49_15690 PF01259 SAICAR synthetase JFY49_15695 PF16193 AAA C-terminal domain JFY49_15695 PF00004 ATPase family associated with various cellular activities (AAA) JFY49_15695 PF12002 MgsA AAA+ ATPase C terminal JFY49_15700 PF03692 Putative zinc- or iron-chelating domain JFY49_15705 PF07043 Protein of unknown function (DUF1328) JFY49_15710 PF03023 Lipid II flippase MurJ JFY49_15715 PF01510 N-acetylmuramoyl-L-alanine amidase JFY49_15720 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JFY49_15720 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JFY49_15725 PF03725 3' exoribonuclease family, domain 2 JFY49_15725 PF01138 3' exoribonuclease family, domain 1 JFY49_15730 PF00487 Fatty acid desaturase JFY49_15735 PF00175 Oxidoreductase NAD-binding domain JFY49_15735 PF00111 2Fe-2S iron-sulfur cluster binding domain JFY49_15735 PF00970 Oxidoreductase FAD-binding domain JFY49_15740 PF00440 Bacterial regulatory proteins, tetR family JFY49_15745 PF01323 DSBA-like thioredoxin domain JFY49_15755 PF13419 Haloacid dehalogenase-like hydrolase JFY49_15760 PF00106 short chain dehydrogenase JFY49_15775 PF00696 Amino acid kinase family JFY49_15775 PF00583 Acetyltransferase (GNAT) family JFY49_15780 PF09084 NMT1/THI5 like JFY49_15785 PF09084 NMT1/THI5 like JFY49_15790 PF00296 Luciferase-like monooxygenase JFY49_15795 PF00528 Binding-protein-dependent transport system inner membrane component JFY49_15800 PF00005 ABC transporter JFY49_15805 PF00440 Bacterial regulatory proteins, tetR family JFY49_15805 PF08362 YcdC-like protein, C-terminal region JFY49_15815 PF01687 Riboflavin kinase JFY49_15815 PF06574 FAD synthetase JFY49_15820 PF08264 Anticodon-binding domain of tRNA JFY49_15820 PF06827 Zinc finger found in FPG and IleRS JFY49_15820 PF00133 tRNA synthetases class I (I, L, M and V) JFY49_15825 PF01252 Signal peptidase (SPase) II JFY49_15830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JFY49_15845 PF07995 Glucose / Sorbosone dehydrogenase JFY49_15850 PF00872 Transposase, Mutator family JFY49_15855 PF12796 Ankyrin repeats (3 copies) JFY49_15865 PF07690 Major Facilitator Superfamily JFY49_15870 PF07690 Major Facilitator Superfamily JFY49_15905 PF12323 Helix-turn-helix domain JFY49_15905 PF01385 Probable transposase JFY49_15905 PF07282 Putative transposase DNA-binding domain JFY49_15910 PF00579 tRNA synthetases class I (W and Y) JFY49_15915 PF03702 Anhydro-N-acetylmuramic acid kinase JFY49_15920 PF13406 Transglycosylase SLT domain JFY49_15925 PF02222 ATP-grasp domain JFY49_15925 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JFY49_15930 PF00731 AIR carboxylase JFY49_15940 PF08245 Mur ligase middle domain JFY49_15940 PF02875 Mur ligase family, glutamate ligase domain JFY49_15940 PF01225 Mur ligase family, catalytic domain JFY49_15945 PF08240 Alcohol dehydrogenase GroES-like domain JFY49_15945 PF00107 Zinc-binding dehydrogenase JFY49_15955 PF03741 Integral membrane protein TerC family JFY49_15960 PF01979 Amidohydrolase family JFY49_15965 PF00156 Phosphoribosyl transferase domain JFY49_15975 PF13098 Thioredoxin-like domain JFY49_15975 PF10411 Disulfide bond isomerase protein N-terminus JFY49_15980 PF01545 Cation efflux family JFY49_15980 PF16916 Dimerisation domain of Zinc Transporter JFY49_15985 PF02583 Metal-sensitive transcriptional repressor JFY49_15990 PF07690 Major Facilitator Superfamily JFY49_15995 PF01926 50S ribosome-binding GTPase JFY49_15995 PF12631 MnmE helical domain JFY49_15995 PF10396 GTP-binding protein TrmE N-terminus JFY49_16000 PF14849 YidC periplasmic domain JFY49_16000 PF02096 60Kd inner membrane protein JFY49_16005 PF01809 Putative membrane protein insertion efficiency factor JFY49_16010 PF00825 Ribonuclease P JFY49_16015 PF00468 Ribosomal protein L34 JFY49_16030 PF00226 DnaJ domain JFY49_16030 PF00684 DnaJ central domain JFY49_16030 PF01556 DnaJ C terminal domain JFY49_16050 PF01051 Initiator Replication protein JFY49_16080 PF00226 DnaJ domain JFY49_16080 PF00684 DnaJ central domain JFY49_16080 PF01556 DnaJ C terminal domain JFY49_16100 PF01051 Initiator Replication protein JFY49_16120 PF01638 HxlR-like helix-turn-helix JFY49_16125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JFY49_16140 PF13005 zinc-finger binding domain of transposase IS66 JFY49_16140 PF13007 Transposase C of IS166 homeodomain JFY49_16140 PF03050 Transposase IS66 family JFY49_16140 PF13817 IS66 C-terminal element JFY49_16165 PF04851 Type III restriction enzyme, res subunit JFY49_16170 PF01555 DNA methylase JFY49_16190 PF01636 Phosphotransferase enzyme family JFY49_16195 PF00665 Integrase core domain JFY49_16195 PF13936 Helix-turn-helix domain JFY49_16200 PF00753 Metallo-beta-lactamase superfamily JFY49_16210 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JFY49_16215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JFY49_16225 PF00565 Staphylococcal nuclease homologue JFY49_16285 PF08774 VRR-NUC domain JFY49_16285 PF04851 Type III restriction enzyme, res subunit JFY49_16290 PF18273 Type III R-M EcoP15I C-terminal domain JFY49_16290 PF01555 DNA methylase JFY49_16310 PF00176 SNF2 family N-terminal domain JFY49_16310 PF00271 Helicase conserved C-terminal domain JFY49_16310 PF12137 RNA polymerase recycling family C-terminal JFY49_16310 PF18339 RapA N-terminal Tudor like domain 1 JFY49_16310 PF18337 RapA N-terminal Tudor like domain JFY49_16395 PF17841 BID domain of Bartonella effector protein (Bep) JFY49_16395 PF02661 Fic/DOC family JFY49_16435 PF00313 'Cold-shock' DNA-binding domain JFY49_16505 PF13438 Domain of unknown function (DUF4113) JFY49_16505 PF11799 impB/mucB/samB family C-terminal domain JFY49_16505 PF11798 IMS family HHH motif JFY49_16505 PF00817 impB/mucB/samB family JFY49_16510 PF00717 Peptidase S24-like JFY49_16530 PF13936 Helix-turn-helix domain JFY49_16530 PF00665 Integrase core domain JFY49_16715 PF00437 Type II/IV secretion system protein JFY49_16735 PF17762 HTH domain found in ParB protein JFY49_16735 PF02195 ParB-like nuclease domain JFY49_16740 PF13614 AAA domain JFY49_16775 PF13361 UvrD-like helicase C-terminal domain JFY49_16775 PF00580 UvrD/REP helicase N-terminal domain JFY49_16960 PF01435 Peptidase family M48 JFY49_17045 PF00962 Adenosine/AMP deaminase JFY49_17090 PF07690 Major Facilitator Superfamily JFY49_17095 PF03466 LysR substrate binding domain JFY49_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JFY49_17100 PF13610 DDE domain JFY49_17105 PF01636 Phosphotransferase enzyme family JFY49_17110 PF00005 ABC transporter JFY49_17110 PF12848 ABC transporter JFY49_17135 PF01381 Helix-turn-helix JFY49_17140 PF05973 Phage derived protein Gp49-like (DUF891) JFY49_17170 PF13610 DDE domain JFY49_17185 PF00809 Pterin binding enzyme JFY49_17195 PF13610 DDE domain JFY49_17200 PF00239 Resolvase, N terminal domain JFY49_17200 PF02796 Helix-turn-helix domain of resolvase JFY49_17215 PF00529 HlyD membrane-fusion protein of T1SS JFY49_17215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JFY49_17220 PF00873 AcrB/AcrD/AcrF family JFY49_17225 PF07690 Major Facilitator Superfamily JFY49_17230 PF18698 Histidine kinase sensor domain JFY49_17230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JFY49_17230 PF00672 HAMP domain JFY49_17230 PF00989 PAS fold JFY49_17230 PF00512 His Kinase A (phospho-acceptor) domain JFY49_17235 PF00486 Transcriptional regulatory protein, C terminal JFY49_17235 PF00072 Response regulator receiver domain JFY49_17245 PF00905 Penicillin binding protein transpeptidase domain JFY49_17290 PF02522 Aminoglycoside 3-N-acetyltransferase JFY49_17310 PF01520 N-acetylmuramoyl-L-alanine amidase JFY49_17310 PF08239 Bacterial SH3 domain JFY49_17320 PF13005 zinc-finger binding domain of transposase IS66 JFY49_17320 PF13007 Transposase C of IS166 homeodomain JFY49_17320 PF13817 IS66 C-terminal element JFY49_17320 PF03050 Transposase IS66 family JFY49_17350 PF00589 Phage integrase family JFY49_17350 PF02899 Phage integrase, N-terminal SAM-like domain JFY49_17415 PF01396 Topoisomerase DNA binding C4 zinc finger JFY49_17415 PF01131 DNA topoisomerase JFY49_17415 PF01751 Toprim domain