A0J50_00085	SM00271	DnaJ molecular chaperone homology domain
A0J50_00125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_00130	SM00829	Enoylreductase
A0J50_00150	SM00478	endonuclease III
A0J50_00150	SM00525	A0J50_00150
A0J50_00175	SM00382	ATPases associated with a variety of cellular activities
A0J50_00200	SM01130	A0J50_00200
A0J50_00230	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_00270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_00270	SM00866	A0J50_00270
A0J50_00350	SM00382	ATPases associated with a variety of cellular activities
A0J50_00445	SM00450	Rhodanese Homology Domain
A0J50_00475	SM00387	Histidine kinase-like ATPases
A0J50_00475	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_00480	SM00448	cheY-homologous receiver domain
A0J50_00480	SM00862	Transcriptional regulatory protein, C terminal
A0J50_00535	SM00257	Lysin motif
A0J50_00560	SM00387	Histidine kinase-like ATPases
A0J50_00560	SM00433	TopoisomeraseII
A0J50_00590	SM00095	Transthyretin
A0J50_00690	SM00842	Cell division protein FtsA
A0J50_00695	SM00864	Tubulin/FtsZ family, GTPase domain
A0J50_00695	SM00865	Tubulin/FtsZ family, C-terminal domain
A0J50_00740	SM00849	Metallo-beta-lactamase superfamily
A0J50_00745	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0J50_00745	SM01240	A0J50_00745
A0J50_00770	SM00937	A0J50_00770
A0J50_00775	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0J50_00815	SM00344	helix_turn_helix ASNC type
A0J50_00830	SM00421	helix_turn_helix, Lux Regulon
A0J50_00830	SM00448	cheY-homologous receiver domain
A0J50_00870	SM00267	diguanylate cyclase
A0J50_00885	SM00829	Enoylreductase
A0J50_00905	SM00422	helix_turn_helix, mercury resistance
A0J50_00940	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_01030	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_01040	SM00671	Sel1-like repeats.
A0J50_01085	SM00491	A0J50_01085
A0J50_01115	SM00477	DNA/RNA non-specific endonuclease
A0J50_01115	SM00892	DNA/RNA non-specific endonuclease
A0J50_01135	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_01155	SM00357	Cold shock protein domain
A0J50_01175	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_01185	SM00474	3'-5' exonuclease
A0J50_01230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0J50_01230	SM00387	Histidine kinase-like ATPases
A0J50_01230	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_01235	SM00448	cheY-homologous receiver domain
A0J50_01235	SM00862	Transcriptional regulatory protein, C terminal
A0J50_01240	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_01240	SM00732	Likely ribonuclease with RNase H fold.
A0J50_01260	SM00382	ATPases associated with a variety of cellular activities
A0J50_01265	SM00671	Sel1-like repeats.
A0J50_01415	SM00842	Cell division protein FtsA
A0J50_01435	SM00965	Secretin and TonB N terminus short domain
A0J50_01520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0J50_01520	SM00954	Region found in RelA / SpoT proteins
A0J50_01525	SM01409	A0J50_01525
A0J50_01530	SM00072	Guanylate kinase homologues.
A0J50_01715	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A0J50_01860	SM00861	Transketolase, pyrimidine binding domain
A0J50_01870	SM00487	DEAD-like helicases superfamily
A0J50_01870	SM00490	helicase superfamily c-terminal domain
A0J50_01880	SM00382	ATPases associated with a variety of cellular activities
A0J50_01940	SM00563	Phosphate acyltransferases
A0J50_01990	SM01403	A0J50_01990
A0J50_02010	SM01382	A0J50_02010
A0J50_02010	SM01383	A0J50_02010
A0J50_02025	SM00322	K homology RNA-binding domain
A0J50_02045	SM01374	A0J50_02045
A0J50_02050	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0J50_02115	SM00363	S4 RNA-binding domain
A0J50_02115	SM01390	A0J50_02115
A0J50_02120	SM00662	RNA polymerases D
A0J50_02180	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_02180	SM00955	A0J50_02180
A0J50_02305	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0J50_02395	SM00878	Biotin carboxylase C-terminal domain
A0J50_02450	SM00650	Ribosomal RNA adenine dimethylases
A0J50_02480	SM00563	Phosphate acyltransferases
A0J50_02485	SM00155	Phospholipase D. Active site motifs.
A0J50_02500	SM00267	diguanylate cyclase
A0J50_02595	SM00450	Rhodanese Homology Domain
A0J50_02620	SM00481	DNA polymerase alpha chain like domain
A0J50_02650	SM01323	A0J50_02650
A0J50_02695	SM00387	Histidine kinase-like ATPases
A0J50_02695	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_02805	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0J50_02805	SM00387	Histidine kinase-like ATPases
A0J50_02805	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_02810	SM00448	cheY-homologous receiver domain
A0J50_02810	SM00862	Transcriptional regulatory protein, C terminal
A0J50_02875	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_02905	SM00849	Metallo-beta-lactamase superfamily
A0J50_02915	SM00957	SecA DEAD-like domain
A0J50_02915	SM00958	SecA preprotein cross-linking domain
A0J50_02965	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_02980	SM00564	beta-propeller repeat
A0J50_03040	SM00838	Elongation factor G C-terminus
A0J50_03060	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A0J50_03060	SM01232	A0J50_03060
A0J50_03085	SM00671	Sel1-like repeats.
A0J50_03115	SM00903	Flavin reductase like domain
A0J50_03180	SM00448	cheY-homologous receiver domain
A0J50_03185	SM00448	cheY-homologous receiver domain
A0J50_03190	SM00260	Two component signalling adaptor domain
A0J50_03195	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A0J50_03200	SM00073	Histidine Phosphotransfer domain
A0J50_03200	SM00260	Two component signalling adaptor domain
A0J50_03200	SM00387	Histidine kinase-like ATPases
A0J50_03200	SM00448	cheY-homologous receiver domain
A0J50_03200	SM01231	A0J50_03200
A0J50_03440	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_03445	SM00829	Enoylreductase
A0J50_03495	SM00244	prohibitin homologues
A0J50_03510	SM00563	Phosphate acyltransferases
A0J50_03535	SM00448	cheY-homologous receiver domain
A0J50_03535	SM00862	Transcriptional regulatory protein, C terminal
A0J50_03540	SM00387	Histidine kinase-like ATPases
A0J50_03540	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_03595	SM00822	A0J50_03595
A0J50_03630	SM00014	Acid phosphatase homologues
A0J50_03685	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A0J50_03795	SM00861	Transketolase, pyrimidine binding domain
A0J50_03815	SM00881	CoA binding domain
A0J50_03850	SM00854	Bacterial capsule synthesis protein PGA_cap
A0J50_03895	SM00851	MGS-like domain
A0J50_03895	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A0J50_03900	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A0J50_03915	SM01103	A0J50_03915
A0J50_03925	SM00382	ATPases associated with a variety of cellular activities
A0J50_04000	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A0J50_04030	SM00883	Chaperonin 10 Kd subunit
A0J50_04045	SM00849	Metallo-beta-lactamase superfamily
A0J50_04210	SM00978	A0J50_04210
A0J50_04255	SM00893	Electron transfer flavoprotein domain
A0J50_04315	SM00382	ATPases associated with a variety of cellular activities
A0J50_04435	SM00382	ATPases associated with a variety of cellular activities
A0J50_04440	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0J50_04445	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0J50_04450	SM01211	A0J50_04450
A0J50_04525	SM00382	ATPases associated with a variety of cellular activities
A0J50_04575	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_04585	SM00838	Elongation factor G C-terminus
A0J50_04600	SM00358	Double-stranded RNA binding motif
A0J50_04600	SM00535	Ribonuclease III family
A0J50_04665	SM00267	diguanylate cyclase
A0J50_04675	SM00487	DEAD-like helicases superfamily
A0J50_04675	SM00490	helicase superfamily c-terminal domain
A0J50_04690	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A0J50_04710	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A0J50_04800	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_04815	SM01329	A0J50_04815
A0J50_04930	SM00344	helix_turn_helix ASNC type
A0J50_04960	SM00382	ATPases associated with a variety of cellular activities
A0J50_05005	SM00936	Penicillin-binding protein 5, C-terminal domain 
A0J50_05055	SM00052	Putative diguanylate phosphodiesterase
A0J50_05070	SM00841	Elongation factor P, C-terminal
A0J50_05070	SM01185	A0J50_05070
A0J50_05145	SM00382	ATPases associated with a variety of cellular activities
A0J50_05185	SM00382	ATPases associated with a variety of cellular activities
A0J50_05190	SM00382	ATPases associated with a variety of cellular activities
A0J50_05260	SM00463	Small MutS-related domain
A0J50_05300	SM01230	A0J50_05300
A0J50_05355	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_05365	SM00919	Malic enzyme, NAD binding domain
A0J50_05365	SM01274	A0J50_05365
A0J50_05370	SM00052	Putative diguanylate phosphodiesterase
A0J50_05370	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0J50_05370	SM00091	PAS domain
A0J50_05370	SM00267	diguanylate cyclase
A0J50_05405	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_05450	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_05500	SM00382	ATPases associated with a variety of cellular activities
A0J50_05515	SM00479	A0J50_05515
A0J50_05550	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_05565	SM00382	ATPases associated with a variety of cellular activities
A0J50_05585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_05620	SM00448	cheY-homologous receiver domain
A0J50_05620	SM00862	Transcriptional regulatory protein, C terminal
A0J50_05625	SM00387	Histidine kinase-like ATPases
A0J50_05625	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_05680	SM00830	Chorismate mutase type II
A0J50_05740	SM00357	Cold shock protein domain
A0J50_05745	SM00487	DEAD-like helicases superfamily
A0J50_05745	SM00490	helicase superfamily c-terminal domain
A0J50_05765	SM00855	Phosphoglycerate mutase family
A0J50_05870	SM00357	Cold shock protein domain
A0J50_05875	SM01034	Sensors of blue-light using FAD
A0J50_05965	SM00095	Transthyretin
A0J50_05975	SM00448	cheY-homologous receiver domain
A0J50_05975	SM00862	Transcriptional regulatory protein, C terminal
A0J50_05980	SM00387	Histidine kinase-like ATPases
A0J50_05980	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_06020	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_06025	SM00448	cheY-homologous receiver domain
A0J50_06025	SM00862	Transcriptional regulatory protein, C terminal
A0J50_06045	SM00829	Enoylreductase
A0J50_06080	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_06150	SM00849	Metallo-beta-lactamase superfamily
A0J50_06160	SM00382	ATPases associated with a variety of cellular activities
A0J50_06160	SM00930	A0J50_06160
A0J50_06170	SM01209	A0J50_06170
A0J50_06170	SM01210	A0J50_06170
A0J50_06175	SM00798	AICARFT/IMPCHase bienzyme
A0J50_06175	SM00851	MGS-like domain
A0J50_06200	SM01228	A0J50_06200
A0J50_06220	SM00460	Transglutaminase/protease-like homologues
A0J50_06230	SM01005	Alanine racemase, C-terminal domain
A0J50_06365	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_06385	SM00822	A0J50_06385
A0J50_06395	SM00903	Flavin reductase like domain
A0J50_06410	SM00905	Dihydroneopterin aldolase
A0J50_06435	SM00387	Histidine kinase-like ATPases
A0J50_06435	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_06445	SM01230	A0J50_06445
A0J50_06540	SM00363	S4 RNA-binding domain
A0J50_06565	SM00853	MutL C terminal dimerisation domain
A0J50_06565	SM01340	A0J50_06565
A0J50_06635	SM00862	Transcriptional regulatory protein, C terminal
A0J50_06650	SM00382	ATPases associated with a variety of cellular activities
A0J50_06685	SM00972	Spore Coat Protein U domain
A0J50_06700	SM00972	Spore Coat Protein U domain
A0J50_06720	SM00830	Chorismate mutase type II
A0J50_06745	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0J50_06845	SM00382	ATPases associated with a variety of cellular activities
A0J50_06870	SM00344	helix_turn_helix ASNC type
A0J50_06900	SM00822	A0J50_06900
A0J50_06985	SM00226	Low molecular weight phosphatase family
A0J50_07025	SM00972	Spore Coat Protein U domain
A0J50_07055	SM00878	Biotin carboxylase C-terminal domain
A0J50_07115	SM00448	cheY-homologous receiver domain
A0J50_07115	SM01012	A0J50_07115
A0J50_07135	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A0J50_07150	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_07165	SM00852	Probable molybdopterin binding domain
A0J50_07170	SM00852	Probable molybdopterin binding domain
A0J50_07180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_07235	SM01034	Sensors of blue-light using FAD
A0J50_07275	SM00382	ATPases associated with a variety of cellular activities
A0J50_07275	SM00448	cheY-homologous receiver domain
A0J50_07280	SM00091	PAS domain
A0J50_07280	SM00387	Histidine kinase-like ATPases
A0J50_07280	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_07285	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_07315	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_07325	SM00935	Outer membrane protein (OmpH-like)
A0J50_07360	SM00382	ATPases associated with a variety of cellular activities
A0J50_07365	SM00363	S4 RNA-binding domain
A0J50_07385	SM00344	helix_turn_helix ASNC type
A0J50_07435	SM00052	Putative diguanylate phosphodiesterase
A0J50_07435	SM00091	PAS domain
A0J50_07435	SM00267	diguanylate cyclase
A0J50_07445	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0J50_07515	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0J50_07540	SM00382	ATPases associated with a variety of cellular activities
A0J50_07540	SM00962	SRP54-type protein, GTPase domain
A0J50_07540	SM00963	SRP54-type protein, helical bundle domain
A0J50_07600	SM01264	A0J50_07600
A0J50_07640	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0J50_07655	SM00382	ATPases associated with a variety of cellular activities
A0J50_07655	SM01086	C-terminal, D2-small domain, of ClpB protein
A0J50_07720	SM01192	A0J50_07720
A0J50_07720	SM01193	A0J50_07720
A0J50_07750	SM00882	Coenzyme A transferase
A0J50_07755	SM00882	Coenzyme A transferase
A0J50_07800	SM00710	Parallel beta-helix repeats
A0J50_07810	SM00564	beta-propeller repeat
A0J50_07830	SM00849	Metallo-beta-lactamase superfamily
A0J50_07835	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_07855	SM00855	Phosphoglycerate mutase family
A0J50_07875	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0J50_07920	SM00903	Flavin reductase like domain
A0J50_07925	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_07955	SM00882	Coenzyme A transferase
A0J50_07960	SM00882	Coenzyme A transferase
A0J50_07975	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A0J50_07990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_07990	SM00895	A0J50_07990
A0J50_08035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_08035	SM00895	A0J50_08035
A0J50_08055	SM00382	ATPases associated with a variety of cellular activities
A0J50_08090	SM00422	helix_turn_helix, mercury resistance
A0J50_08140	SM00822	A0J50_08140
A0J50_08205	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_08320	SM00382	ATPases associated with a variety of cellular activities
A0J50_08330	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_08430	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_08465	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_08490	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0J50_08515	SM00220	Serine/Threonine protein kinases, catalytic domain
A0J50_08515	SM00382	ATPases associated with a variety of cellular activities
A0J50_08685	SM00829	Enoylreductase
A0J50_08715	SM00155	Phospholipase D. Active site motifs.
A0J50_08725	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0J50_08725	SM00387	Histidine kinase-like ATPases
A0J50_08725	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_08730	SM00448	cheY-homologous receiver domain
A0J50_08730	SM00862	Transcriptional regulatory protein, C terminal
A0J50_08755	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_08795	SM00382	ATPases associated with a variety of cellular activities
A0J50_08830	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_08840	SM00903	Flavin reductase like domain
A0J50_08865	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_08910	SM00882	Coenzyme A transferase
A0J50_08915	SM00882	Coenzyme A transferase
A0J50_08980	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_09005	SM00849	Metallo-beta-lactamase superfamily
A0J50_09010	SM00382	ATPases associated with a variety of cellular activities
A0J50_09020	SM00829	Enoylreductase
A0J50_09040	SM00861	Transketolase, pyrimidine binding domain
A0J50_09050	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_09065	SM00267	diguanylate cyclase
A0J50_09095	SM00382	ATPases associated with a variety of cellular activities
A0J50_09130	SM00341	Helicase and RNase D C-terminal
A0J50_09130	SM00474	3'-5' exonuclease
A0J50_09135	SM00493	A0J50_09135
A0J50_09165	SM01324	A0J50_09165
A0J50_09240	SM00855	Phosphoglycerate mutase family
A0J50_09300	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_09310	SM00411	bacterial (prokaryotic) histone like domain
A0J50_09345	SM00271	DnaJ molecular chaperone homology domain
A0J50_09360	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A0J50_09370	SM00487	DEAD-like helicases superfamily
A0J50_09370	SM00490	helicase superfamily c-terminal domain
A0J50_09370	SM00982	A0J50_09370
A0J50_09370	SM01058	CarD-like/TRCF domain
A0J50_09425	SM00382	ATPases associated with a variety of cellular activities
A0J50_09495	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_09510	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A0J50_09520	SM00411	bacterial (prokaryotic) histone like domain
A0J50_09525	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_09550	SM00986	Uracil DNA glycosylase superfamily
A0J50_09550	SM00987	UreE urease accessory protein, C-terminal domain 
A0J50_09625	SM00470	ParB-like nuclease domain
A0J50_09685	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A0J50_09695	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0J50_09715	SM00382	ATPases associated with a variety of cellular activities
A0J50_09725	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_09745	SM00344	helix_turn_helix ASNC type
A0J50_09780	SM00867	YceI-like domain 
A0J50_09790	SM00861	Transketolase, pyrimidine binding domain
A0J50_09825	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_09845	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_09845	SM00876	Biotin and Thiamin Synthesis associated domain
A0J50_09885	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_09930	SM01236	A0J50_09930
A0J50_09940	SM00563	Phosphate acyltransferases
A0J50_09950	SM00344	helix_turn_helix ASNC type
A0J50_09960	SM00382	ATPases associated with a variety of cellular activities
A0J50_09975	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_09975	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A0J50_10015	SM00382	ATPases associated with a variety of cellular activities
A0J50_10015	SM00930	A0J50_10015
A0J50_10035	SM00100	Cyclic nucleotide-monophosphate binding domain
A0J50_10035	SM00419	helix_turn_helix, cAMP Regulatory protein
A0J50_10070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0J50_10085	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_10115	SM00870	A0J50_10115
A0J50_10120	SM00481	DNA polymerase alpha chain like domain
A0J50_10175	SM00226	Low molecular weight phosphatase family
A0J50_10180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0J50_10205	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_10205	SM00895	A0J50_10205
A0J50_10230	SM00382	ATPases associated with a variety of cellular activities
A0J50_10275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_10295	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A0J50_10335	SM00822	A0J50_10335
A0J50_10360	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_10375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_10425	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_10435	SM00822	A0J50_10435
A0J50_10440	SM00450	Rhodanese Homology Domain
A0J50_10470	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_10475	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_10480	SM00382	ATPases associated with a variety of cellular activities
A0J50_10500	SM00421	helix_turn_helix, Lux Regulon
A0J50_10500	SM00448	cheY-homologous receiver domain
A0J50_10505	SM00387	Histidine kinase-like ATPases
A0J50_10505	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_10505	SM00448	cheY-homologous receiver domain
A0J50_10515	SM00344	helix_turn_helix ASNC type
A0J50_10535	SM00384	DNA binding domain with preference for A/T rich regions
A0J50_10555	SM01060	A0J50_10555
A0J50_10560	SM01236	A0J50_10560
A0J50_10700	SM00882	Coenzyme A transferase
A0J50_10735	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_10755	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_10795	SM00382	ATPases associated with a variety of cellular activities
A0J50_10805	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_10805	SM00866	A0J50_10805
A0J50_10810	SM01005	Alanine racemase, C-terminal domain
A0J50_10820	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_10940	SM00422	helix_turn_helix, mercury resistance
A0J50_10955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_10995	SM00829	Enoylreductase
A0J50_11045	SM00878	Biotin carboxylase C-terminal domain
A0J50_11050	SM00796	Allophanate hydrolase subunit 1
A0J50_11050	SM00797	Allophanate hydrolase subunit 2
A0J50_11170	SM00052	Putative diguanylate phosphodiesterase
A0J50_11185	SM00965	Secretin and TonB N terminus short domain
A0J50_11195	SM00422	helix_turn_helix, mercury resistance
A0J50_11200	SM00972	Spore Coat Protein U domain
A0J50_11220	SM01060	A0J50_11220
A0J50_11265	SM00344	helix_turn_helix ASNC type
A0J50_11285	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_11295	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A0J50_11295	SM00534	ATPase domain of DNA mismatch repair MUTS family
A0J50_11340	SM00382	ATPases associated with a variety of cellular activities
A0J50_11350	SM00382	ATPases associated with a variety of cellular activities
A0J50_11370	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0J50_11375	SM00840	A0J50_11375
A0J50_11490	SM00344	helix_turn_helix ASNC type
A0J50_11525	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_11575	SM00422	helix_turn_helix, mercury resistance
A0J50_11775	SM00382	ATPases associated with a variety of cellular activities
A0J50_11775	SM01086	C-terminal, D2-small domain, of ClpB protein
A0J50_11795	SM00100	Cyclic nucleotide-monophosphate binding domain
A0J50_11795	SM00419	helix_turn_helix, cAMP Regulatory protein
A0J50_11825	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A0J50_11830	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0J50_11905	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_11915	SM00822	A0J50_11915
A0J50_11970	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_11970	SM00895	A0J50_11970
A0J50_11975	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0J50_12025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_12025	SM00895	A0J50_12025
A0J50_12115	SM00267	diguanylate cyclase
A0J50_12125	SM00479	A0J50_12125
A0J50_12150	SM00382	ATPases associated with a variety of cellular activities
A0J50_12170	SM00257	Lysin motif
A0J50_12175	SM00479	A0J50_12175
A0J50_12225	SM00422	helix_turn_helix, mercury resistance
A0J50_12245	SM01011	Aminopeptidase P, N-terminal domain
A0J50_12285	SM00382	ATPases associated with a variety of cellular activities
A0J50_12285	SM00464	Found in ATP-dependent protease La (LON)
A0J50_12305	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A0J50_12315	SM00478	endonuclease III
A0J50_12360	SM00988	UreE urease accessory protein, N-terminal domain
A0J50_12410	SM01091	Transporter associated domain
A0J50_12505	SM00382	ATPases associated with a variety of cellular activities
A0J50_12515	SM00947	Carbonic anhydrase
A0J50_12595	SM00861	Transketolase, pyrimidine binding domain
A0J50_12610	SM00822	A0J50_12610
A0J50_12635	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_12705	SM00822	A0J50_12705
A0J50_12725	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_12765	SM01322	A0J50_12765
A0J50_12885	SM01130	A0J50_12885
A0J50_12930	SM00487	DEAD-like helicases superfamily
A0J50_12930	SM00490	helicase superfamily c-terminal domain
A0J50_12990	SM01004	Delta-aminolevulinic acid dehydratase
A0J50_13035	SM00382	ATPases associated with a variety of cellular activities
A0J50_13040	SM00382	ATPases associated with a variety of cellular activities
A0J50_13105	SM00563	Phosphate acyltransferases
A0J50_13140	SM00843	A0J50_13140
A0J50_13180	SM00838	Elongation factor G C-terminus
A0J50_13180	SM00889	Elongation factor G, domain IV
A0J50_13200	SM00825	Beta-ketoacyl synthase
A0J50_13255	SM01329	A0J50_13255
A0J50_13325	SM00028	Tetratricopeptide repeats
A0J50_13360	SM01400	A0J50_13360
A0J50_13405	SM00257	Lysin motif
A0J50_13415	SM00822	A0J50_13415
A0J50_13420	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A0J50_13455	SM00363	S4 RNA-binding domain
A0J50_13505	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0J50_13505	SM00292	breast cancer carboxy-terminal domain
A0J50_13505	SM00532	Ligase N family
A0J50_13510	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A0J50_13520	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_13540	SM00382	ATPases associated with a variety of cellular activities
A0J50_13540	SM00962	SRP54-type protein, GTPase domain
A0J50_13540	SM00963	SRP54-type protein, helical bundle domain
A0J50_13685	SM00357	Cold shock protein domain
A0J50_13730	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A0J50_13730	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A0J50_13735	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A0J50_13760	SM00267	diguanylate cyclase
A0J50_13770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0J50_13770	SM00387	Histidine kinase-like ATPases
A0J50_13770	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_13775	SM00448	cheY-homologous receiver domain
A0J50_13775	SM00862	Transcriptional regulatory protein, C terminal
A0J50_13800	SM00857	Resolvase, N terminal domain
A0J50_13835	SM00903	Flavin reductase like domain
A0J50_14165	SM00331	Sigma factor PP2C-like phosphatases
A0J50_14185	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0J50_14215	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A0J50_14215	SM00474	3'-5' exonuclease
A0J50_14215	SM00475	5'-3' exonuclease
A0J50_14215	SM00482	DNA polymerase A domain
A0J50_14230	SM00977	TilS substrate C-terminal domain
A0J50_14250	SM00357	Cold shock protein domain
A0J50_14250	SM00382	ATPases associated with a variety of cellular activities
A0J50_14250	SM00959	Rho termination factor, N-terminal domain
A0J50_14260	SM00411	bacterial (prokaryotic) histone like domain
A0J50_14265	SM00873	B3/4 domain
A0J50_14265	SM00874	tRNA synthetase B5 domain
A0J50_14265	SM00896	Ferredoxin-fold anticodon binding domain
A0J50_14320	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0J50_14365	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0J50_14380	SM00954	Region found in RelA / SpoT proteins
A0J50_14400	SM00073	Histidine Phosphotransfer domain
A0J50_14400	SM00387	Histidine kinase-like ATPases
A0J50_14400	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_14400	SM00448	cheY-homologous receiver domain
A0J50_14445	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A0J50_14445	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A0J50_14505	SM00226	Low molecular weight phosphatase family
A0J50_14510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0J50_14530	SM00899	A0J50_14530
A0J50_14580	SM00448	cheY-homologous receiver domain
A0J50_14580	SM00862	Transcriptional regulatory protein, C terminal
A0J50_14585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0J50_14585	SM00387	Histidine kinase-like ATPases
A0J50_14585	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_14590	SM00746	metallochaperone-like domain
A0J50_14625	SM00271	DnaJ molecular chaperone homology domain
A0J50_14755	SM00849	Metallo-beta-lactamase superfamily
A0J50_14850	SM01236	A0J50_14850
A0J50_14860	SM00052	Putative diguanylate phosphodiesterase
A0J50_14860	SM00267	diguanylate cyclase
A0J50_14900	SM00382	ATPases associated with a variety of cellular activities
A0J50_14920	SM00479	A0J50_14920
A0J50_14930	SM00450	Rhodanese Homology Domain
A0J50_14955	SM00564	beta-propeller repeat
A0J50_14980	SM00028	Tetratricopeptide repeats
A0J50_14985	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_14990	SM00562	A0J50_14990
A0J50_15000	SM00014	Acid phosphatase homologues
A0J50_15010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_15010	SM00245	tail specific protease
A0J50_15085	SM00382	ATPases associated with a variety of cellular activities
A0J50_15085	SM00994	ClpX C4-type zinc finger
A0J50_15085	SM01086	C-terminal, D2-small domain, of ClpB protein
A0J50_15105	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0J50_15110	SM00917	LeuA allosteric (dimerisation) domain
A0J50_15125	SM00671	Sel1-like repeats.
A0J50_15270	SM00360	RNA recognition motif
A0J50_15290	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A0J50_15290	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A0J50_15290	SM00493	A0J50_15290
A0J50_15305	SM00829	Enoylreductase
A0J50_15315	SM00382	ATPases associated with a variety of cellular activities
A0J50_15345	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0J50_15360	SM00870	A0J50_15360
A0J50_15370	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_15375	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_15390	SM01329	A0J50_15390
A0J50_15440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0J50_15480	SM00363	S4 RNA-binding domain
A0J50_15485	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_15515	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_15580	SM00849	Metallo-beta-lactamase superfamily
A0J50_15620	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0J50_15620	SM01091	Transporter associated domain
A0J50_15685	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_15685	SM00322	K homology RNA-binding domain
A0J50_15690	SM01387	A0J50_15690
A0J50_15700	SM00382	ATPases associated with a variety of cellular activities
A0J50_15810	SM00316	Ribosomal protein S1-like RNA-binding domain
A0J50_15870	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A0J50_15895	SM00732	Likely ribonuclease with RNase H fold.
A0J50_15915	SM00346	helix_turn_helix isocitrate lyase regulation
A0J50_15925	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_15940	SM00465	GIY-YIG type nucleases (URI domain)
A0J50_16000	SM00422	helix_turn_helix, mercury resistance
A0J50_16025	SM00387	Histidine kinase-like ATPases
A0J50_16065	SM00663	RNA polymerase I subunit A N-terminus
A0J50_16090	SM00649	Ribosomal protein L11/L12
A0J50_16095	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A0J50_16095	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0J50_16155	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0J50_16165	SM00528	Domain in histone-like proteins of HNS family
A0J50_16200	SM00448	cheY-homologous receiver domain
A0J50_16200	SM00850	LytTr DNA-binding domain
A0J50_16290	SM00899	A0J50_16290
A0J50_16320	SM00421	helix_turn_helix, Lux Regulon
A0J50_16320	SM00448	cheY-homologous receiver domain
A0J50_16325	SM00387	Histidine kinase-like ATPases
A0J50_16325	SM00388	His Kinase A (phosphoacceptor) domain
A0J50_16330	SM00382	ATPases associated with a variety of cellular activities
A0J50_16330	SM00448	cheY-homologous receiver domain
A0J50_16335	SM00245	tail specific protease
A0J50_16400	SM00938	Nitrogen regulatory protein P-II
A0J50_16425	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_16510	SM00422	helix_turn_helix, mercury resistance
A0J50_16640	SM01007	Class II Aldolase and Adducin N-terminal domain
A0J50_16705	SM01091	Transporter associated domain
A0J50_16740	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0J50_16885	SM00382	ATPases associated with a variety of cellular activities
A0J50_16935	SM00382	ATPases associated with a variety of cellular activities
A0J50_16955	SM00919	Malic enzyme, NAD binding domain
A0J50_16955	SM01274	A0J50_16955
A0J50_16960	SM00836	DALR anticodon binding domain
A0J50_16960	SM01016	Arginyl tRNA synthetase N terminal dom
A0J50_17075	SM00823	Phosphopantetheine attachment site
A0J50_17075	SM00824	Thioesterase
A0J50_17080	SM00823	Phosphopantetheine attachment site
A0J50_17080	SM01294	A0J50_17080
A0J50_17115	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_17255	SM00829	Enoylreductase
A0J50_17260	SM00903	Flavin reductase like domain
A0J50_17310	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_17310	SM00895	A0J50_17310
A0J50_17330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0J50_17330	SM00895	A0J50_17330
A0J50_17350	SM00984	UDP binding domain
A0J50_17410	SM00984	UDP binding domain
A0J50_17430	SM00984	UDP binding domain
A0J50_17440	SM00226	Low molecular weight phosphatase family
A0J50_17465	SM00644	A0J50_17465
A0J50_17540	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_17545	SM00062	Bacterial periplasmic substrate-binding proteins
A0J50_17560	SM00382	ATPases associated with a variety of cellular activities
A0J50_17580	SM00904	Riboflavin kinase
A0J50_17605	SM00248	ankyrin repeats
A0J50_17655	SM00849	Metallo-beta-lactamase superfamily
A0J50_17675	SM00235	Zinc-dependent metalloprotease
A0J50_17705	SM01001	AIR carboxylase
A0J50_17725	SM00014	Acid phosphatase homologues
A0J50_17790	SM01234	A0J50_17790
A0J50_17805	SM00382	ATPases associated with a variety of cellular activities
A0J50_17805	SM00760	Bacterial dnaA protein helix-turn-helix domain
A0J50_17810	SM00480	DNA polymerase III beta subunit
A0J50_17820	SM00387	Histidine kinase-like ATPases
A0J50_17820	SM00433	TopoisomeraseII
A0J50_17835	SM00382	ATPases associated with a variety of cellular activities
A0J50_18050	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_18090	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_18120	SM00829	Enoylreductase
A0J50_18125	SM00822	A0J50_18125
A0J50_18135	SM00829	Enoylreductase
A0J50_18140	SM00829	Enoylreductase
A0J50_18150	SM00829	Enoylreductase
A0J50_18245	SM00857	Resolvase, N terminal domain
A0J50_18255	SM00422	helix_turn_helix, mercury resistance
A0J50_18280	SM00422	helix_turn_helix, mercury resistance
A0J50_18435	SM00829	Enoylreductase
A0J50_18455	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_18515	SM00857	Resolvase, N terminal domain
A0J50_18565	SM00382	ATPases associated with a variety of cellular activities
A0J50_18605	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_18715	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_18790	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_18800	SM00098	Alkaline phosphatase homologues
A0J50_18805	SM00470	ParB-like nuclease domain
A0J50_18835	SM00829	Enoylreductase
A0J50_18875	SM00829	Enoylreductase
A0J50_18915	SM00829	Enoylreductase
A0J50_18925	SM00342	helix_turn_helix, arabinose operon control protein
A0J50_18945	SM00829	Enoylreductase
A0J50_18950	SM00829	Enoylreductase
A0J50_18960	SM00822	A0J50_18960
A0J50_19025	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_19065	SM00530	Helix-turn-helix XRE-family like proteins 
A0J50_19135	SM00530	Helix-turn-helix XRE-family like proteins 
