C3Y93_00045	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_00135	PWY-6703	preQ<sub>0</sub> biosynthesis
C3Y93_00140	PWY-6703	preQ<sub>0</sub> biosynthesis
C3Y93_00190	PWY-6543	4-aminobenzoate biosynthesis
C3Y93_00200	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
C3Y93_00200	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_00200	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_00200	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
C3Y93_00200	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
C3Y93_00200	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
C3Y93_00215	PWY-5316	nicotine biosynthesis
C3Y93_00215	PWY-7342	superpathway of nicotine biosynthesis
C3Y93_00320	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_00320	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_00320	PWY-6901	superpathway of glucose and xylose degradation
C3Y93_00320	PWY-7003	glycerol degradation to butanol
C3Y93_00340	PWY-3341	L-proline biosynthesis III
C3Y93_00340	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
C3Y93_00355	PWY-6409	pyoverdine I biosynthesis
C3Y93_00355	PWY-6562	norspermidine biosynthesis
C3Y93_00355	PWY-761	rhizobactin 1021 biosynthesis
C3Y93_00355	PWY-7855	C3Y93_00355
C3Y93_00355	PWY-7988	C3Y93_00355
C3Y93_00405	PWY-6123	inosine-5'-phosphate biosynthesis I
C3Y93_00405	PWY-6124	inosine-5'-phosphate biosynthesis II
C3Y93_00405	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_00405	PWY-7234	inosine-5'-phosphate biosynthesis III
C3Y93_00415	PWY-7887	C3Y93_00415
C3Y93_00415	PWY-7892	C3Y93_00415
C3Y93_00435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_00435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_00450	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_00450	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
C3Y93_00450	PWY-6596	adenosine nucleotides degradation I
C3Y93_00450	PWY-6606	guanosine nucleotides degradation II
C3Y93_00450	PWY-6607	guanosine nucleotides degradation I
C3Y93_00450	PWY-6608	guanosine nucleotides degradation III
C3Y93_00450	PWY-7185	UTP and CTP dephosphorylation I
C3Y93_00450	PWY-7821	C3Y93_00450
C3Y93_00485	PWY-5386	methylglyoxal degradation I
C3Y93_00565	PWY-6610	adenine and adenosine salvage IV
C3Y93_00590	PWY-2941	L-lysine biosynthesis II
C3Y93_00590	PWY-2942	L-lysine biosynthesis III
C3Y93_00590	PWY-5097	L-lysine biosynthesis VI
C3Y93_00590	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
C3Y93_00590	PWY-6559	spermidine biosynthesis II
C3Y93_00590	PWY-6562	norspermidine biosynthesis
C3Y93_00590	PWY-7153	grixazone biosynthesis
C3Y93_00590	PWY-7977	C3Y93_00590
C3Y93_00615	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_00665	PWY-5686	UMP biosynthesis
C3Y93_00665	PWY-7790	C3Y93_00665
C3Y93_00665	PWY-7791	C3Y93_00665
C3Y93_00715	PWY-4381	fatty acid biosynthesis initiation I
C3Y93_00715	PWY-5743	3-hydroxypropanoate cycle
C3Y93_00715	PWY-5744	glyoxylate assimilation
C3Y93_00715	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_00715	PWY-6722	candicidin biosynthesis
C3Y93_00735	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
C3Y93_00770	PWY-6891	thiazole biosynthesis II (Bacillus)
C3Y93_00770	PWY-6892	thiazole biosynthesis I (E. coli)
C3Y93_00820	PWY-5667	CDP-diacylglycerol biosynthesis I
C3Y93_00820	PWY-5981	CDP-diacylglycerol biosynthesis III
C3Y93_00820	PWY-7902	C3Y93_00820
C3Y93_00840	PWY-5686	UMP biosynthesis
C3Y93_00850	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
C3Y93_00850	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
C3Y93_00850	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
C3Y93_00850	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
C3Y93_00875	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
C3Y93_00950	PWY-5386	methylglyoxal degradation I
C3Y93_01285	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_01285	PWY-7761	C3Y93_01285
C3Y93_01360	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_01360	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_01360	PWY-7991	C3Y93_01360
C3Y93_01395	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
C3Y93_01395	PWY-7494	choline degradation IV
C3Y93_01400	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
C3Y93_01400	PWY-7494	choline degradation IV
C3Y93_01435	PWY-6269	adenosylcobalamin salvage from cobinamide II
C3Y93_01435	PWY-7962	C3Y93_01435
C3Y93_01435	PWY-7971	C3Y93_01435
C3Y93_01435	PWY-7972	C3Y93_01435
C3Y93_01440	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
C3Y93_01440	PWY-6269	adenosylcobalamin salvage from cobinamide II
C3Y93_01440	PWY-7964	C3Y93_01440
C3Y93_01440	PWY-7965	C3Y93_01440
C3Y93_01440	PWY-7966	C3Y93_01440
C3Y93_01440	PWY-7967	C3Y93_01440
C3Y93_01440	PWY-7968	C3Y93_01440
C3Y93_01440	PWY-7969	C3Y93_01440
C3Y93_01440	PWY-7970	C3Y93_01440
C3Y93_01450	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
C3Y93_01450	PWY-6269	adenosylcobalamin salvage from cobinamide II
C3Y93_01450	PWY-7961	C3Y93_01450
C3Y93_01450	PWY-7963	C3Y93_01450
C3Y93_01450	PWY-7964	C3Y93_01450
C3Y93_01450	PWY-7965	C3Y93_01450
C3Y93_01450	PWY-7966	C3Y93_01450
C3Y93_01450	PWY-7967	C3Y93_01450
C3Y93_01450	PWY-7968	C3Y93_01450
C3Y93_01450	PWY-7969	C3Y93_01450
C3Y93_01450	PWY-7970	C3Y93_01450
C3Y93_01450	PWY-7975	C3Y93_01450
C3Y93_01460	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
C3Y93_01465	PWY-6700	queuosine biosynthesis
C3Y93_01470	PWY-6938	NADH repair
C3Y93_01480	PWY-7511	protein ubiquitylation
C3Y93_01510	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
C3Y93_01510	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
C3Y93_01515	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
C3Y93_01515	PWY-5723	Rubisco shunt
C3Y93_01515	PWY-6891	thiazole biosynthesis II (Bacillus)
C3Y93_01515	PWY-6892	thiazole biosynthesis I (E. coli)
C3Y93_01515	PWY-6901	superpathway of glucose and xylose degradation
C3Y93_01515	PWY-7560	methylerythritol phosphate pathway II
C3Y93_01615	PWY-2781	<i>cis</i>-zeatin biosynthesis
C3Y93_01680	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_01750	PWY-7205	CMP phosphorylation
C3Y93_01770	PWY-5686	UMP biosynthesis
C3Y93_01770	PWY-7790	C3Y93_01770
C3Y93_01770	PWY-7791	C3Y93_01770
C3Y93_01795	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_01795	PWY-7118	chitin degradation to ethanol
C3Y93_01795	PWY-7294	xylose degradation IV
C3Y93_01795	PWY-7295	L-arabinose degradation IV
C3Y93_01795	PWY-7854	C3Y93_01795
C3Y93_01855	PWY-7799	C3Y93_01855
C3Y93_01855	PWY-7800	C3Y93_01855
C3Y93_01910	PWY-5667	CDP-diacylglycerol biosynthesis I
C3Y93_01910	PWY-5981	CDP-diacylglycerol biosynthesis III
C3Y93_01910	PWY-7817	C3Y93_01910
C3Y93_01915	PWY-7560	methylerythritol phosphate pathway II
C3Y93_01940	PWY-5971	palmitate biosynthesis II (bacteria and plants)
C3Y93_01940	PWY-5973	<i>cis</i>-vaccenate biosynthesis
C3Y93_01940	PWY-5989	stearate biosynthesis II (bacteria and plants)
C3Y93_01940	PWY-5994	palmitate biosynthesis I (animals and fungi)
C3Y93_01940	PWY-6113	superpathway of mycolate biosynthesis
C3Y93_01940	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
C3Y93_01940	PWY-6519	8-amino-7-oxononanoate biosynthesis I
C3Y93_01940	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
C3Y93_01940	PWY-7663	gondoate biosynthesis (anaerobic)
C3Y93_01940	PWY-7664	oleate biosynthesis IV (anaerobic)
C3Y93_01940	PWY-7858	C3Y93_01940
C3Y93_01940	PWYG-321	mycolate biosynthesis
C3Y93_02110	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
C3Y93_02350	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
C3Y93_02350	PWY-6416	quinate degradation II
C3Y93_02350	PWY-6707	gallate biosynthesis
C3Y93_02440	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
C3Y93_02440	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
C3Y93_02460	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
C3Y93_02460	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
C3Y93_02465	PWY-6389	(<i>S</i>)-acetoin biosynthesis
C3Y93_02510	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_02510	PWY-6164	3-dehydroquinate biosynthesis I
C3Y93_02510	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
C3Y93_02515	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
C3Y93_02515	PWY-3162	L-tryptophan degradation V (side chain pathway)
C3Y93_02515	PWY-5057	L-valine degradation II
C3Y93_02515	PWY-5076	L-leucine degradation III
C3Y93_02515	PWY-5078	L-isoleucine degradation II
C3Y93_02515	PWY-5079	L-phenylalanine degradation III
C3Y93_02515	PWY-5082	L-methionine degradation III
C3Y93_02515	PWY-5480	pyruvate fermentation to ethanol I
C3Y93_02515	PWY-5486	pyruvate fermentation to ethanol II
C3Y93_02515	PWY-5751	phenylethanol biosynthesis
C3Y93_02515	PWY-6313	serotonin degradation
C3Y93_02515	PWY-6333	acetaldehyde biosynthesis I
C3Y93_02515	PWY-6342	noradrenaline and adrenaline degradation
C3Y93_02515	PWY-6587	pyruvate fermentation to ethanol III
C3Y93_02515	PWY-6802	salidroside biosynthesis
C3Y93_02515	PWY-6871	3-methylbutanol biosynthesis
C3Y93_02515	PWY-7013	L-1,2-propanediol degradation
C3Y93_02515	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_02515	PWY-7118	chitin degradation to ethanol
C3Y93_02515	PWY-7396	butanol and isobutanol biosynthesis (engineered)
C3Y93_02515	PWY-7798	C3Y93_02515
C3Y93_02580	PWY-5392	reductive TCA cycle II
C3Y93_02580	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
C3Y93_02580	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_02580	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_02580	PWY-6728	methylaspartate cycle
C3Y93_02580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_02580	PWY-7254	TCA cycle VII (acetate-producers)
C3Y93_02580	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
C3Y93_02655	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
C3Y93_02700	PWY-1361	benzoyl-CoA degradation I (aerobic)
C3Y93_02700	PWY-2361	3-oxoadipate degradation
C3Y93_02700	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
C3Y93_02705	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
C3Y93_02720	PWY-6936	seleno-amino acid biosynthesis
C3Y93_02725	PWY-5667	CDP-diacylglycerol biosynthesis I
C3Y93_02725	PWY-6453	stigma estolide biosynthesis
C3Y93_02725	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
C3Y93_02725	PWY-7587	oleate biosynthesis III (cyanobacteria)
C3Y93_02770	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
C3Y93_02795	PWY-6855	chitin degradation I (archaea)
C3Y93_02795	PWY-6902	chitin degradation II
C3Y93_02795	PWY-7822	C3Y93_02795
C3Y93_03160	PWY-5747	2-methylcitrate cycle II
C3Y93_03170	PWY-4981	L-proline biosynthesis II (from arginine)
C3Y93_03170	PWY-4984	urea cycle
C3Y93_03170	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_03200	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_03200	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_03210	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
C3Y93_03210	PWY-5723	Rubisco shunt
C3Y93_03230	PWY-6803	phosphatidylcholine acyl editing
C3Y93_03230	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
C3Y93_03230	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
C3Y93_03230	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
C3Y93_03230	PWY-7783	C3Y93_03230
C3Y93_03275	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
C3Y93_03285	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
C3Y93_03350	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_03350	PWY-6164	3-dehydroquinate biosynthesis I
C3Y93_03350	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
C3Y93_03360	PWY-7560	methylerythritol phosphate pathway II
C3Y93_03375	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_03375	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_03375	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_03375	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_03380	PWY-7560	methylerythritol phosphate pathway II
C3Y93_03390	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_03390	PWY-1622	formaldehyde assimilation I (serine pathway)
C3Y93_03390	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
C3Y93_03390	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_03390	PWY-5723	Rubisco shunt
C3Y93_03390	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_03390	PWY-6886	1-butanol autotrophic biosynthesis
C3Y93_03390	PWY-6901	superpathway of glucose and xylose degradation
C3Y93_03390	PWY-7003	glycerol degradation to butanol
C3Y93_03390	PWY-7124	ethylene biosynthesis V (engineered)
C3Y93_03390	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
C3Y93_03395	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_03395	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
C3Y93_03400	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
C3Y93_03400	PWY-7177	UTP and CTP dephosphorylation II
C3Y93_03400	PWY-7185	UTP and CTP dephosphorylation I
C3Y93_03505	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_03505	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
C3Y93_03505	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_03505	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_03505	PWY-7385	1,3-propanediol biosynthesis (engineered)
C3Y93_03515	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_03515	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_03515	PWY-6886	1-butanol autotrophic biosynthesis
C3Y93_03515	PWY-6901	superpathway of glucose and xylose degradation
C3Y93_03515	PWY-7003	glycerol degradation to butanol
C3Y93_03555	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_03555	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_03555	PWY-7953	C3Y93_03555
C3Y93_03610	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
C3Y93_03610	PWY-5723	Rubisco shunt
C3Y93_03645	PWY-4081	glutathione redox reactions I
C3Y93_03665	PWY-5747	2-methylcitrate cycle II
C3Y93_03700	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
C3Y93_03700	PWY-6148	tetrahydromethanopterin biosynthesis
C3Y93_03700	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
C3Y93_03700	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_03700	PWY-7852	C3Y93_03700
C3Y93_03700	PWY-7853	C3Y93_03700
C3Y93_03705	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
C3Y93_03705	PWY-6148	tetrahydromethanopterin biosynthesis
C3Y93_03705	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
C3Y93_03705	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_03790	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_03790	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_03805	PWY-3781	aerobic respiration I (cytochrome c)
C3Y93_03805	PWY-4521	arsenite oxidation I (respiratory)
C3Y93_03805	PWY-6692	Fe(II) oxidation
C3Y93_03805	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
C3Y93_03805	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
C3Y93_03850	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
C3Y93_03855	PWY-5676	acetyl-CoA fermentation to butanoate II
C3Y93_03855	PWY-5741	ethylmalonyl-CoA pathway
C3Y93_03855	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
C3Y93_03855	PWY-7948	C3Y93_03855
C3Y93_03920	PWY-6123	inosine-5'-phosphate biosynthesis I
C3Y93_03920	PWY-6124	inosine-5'-phosphate biosynthesis II
C3Y93_03920	PWY-7234	inosine-5'-phosphate biosynthesis III
C3Y93_03925	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
C3Y93_03925	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
C3Y93_03925	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
C3Y93_03955	PWY-6936	seleno-amino acid biosynthesis
C3Y93_03955	PWY-7274	D-cycloserine biosynthesis
C3Y93_03955	PWY-7870	C3Y93_03955
C3Y93_04120	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_04160	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_04160	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
C3Y93_04180	PWY-4381	fatty acid biosynthesis initiation I
C3Y93_04220	PWY-723	alkylnitronates degradation
C3Y93_04270	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_04275	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
C3Y93_04275	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
C3Y93_04275	PWY-6897	thiamin salvage II
C3Y93_04275	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
C3Y93_04275	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
C3Y93_04275	PWY-7356	thiamin salvage IV (yeast)
C3Y93_04275	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
C3Y93_04360	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
C3Y93_04360	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
C3Y93_04370	PWY-3461	L-tyrosine biosynthesis II
C3Y93_04370	PWY-3462	L-phenylalanine biosynthesis II
C3Y93_04370	PWY-6120	L-tyrosine biosynthesis III
C3Y93_04370	PWY-6627	salinosporamide A biosynthesis
C3Y93_04370	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
C3Y93_04370	PWY-7626	bacilysin biosynthesis
C3Y93_04395	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
C3Y93_04395	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
C3Y93_04395	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
C3Y93_04400	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_04400	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_04400	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_04400	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_04410	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
C3Y93_04410	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
C3Y93_04410	PWY-6897	thiamin salvage II
C3Y93_04410	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
C3Y93_04410	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
C3Y93_04410	PWY-7356	thiamin salvage IV (yeast)
C3Y93_04410	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
C3Y93_04490	PWY-4202	arsenate detoxification I (glutaredoxin)
C3Y93_04490	PWY-4621	arsenate detoxification II (glutaredoxin)
C3Y93_04530	PWY-1622	formaldehyde assimilation I (serine pathway)
C3Y93_04530	PWY-181	photorespiration
C3Y93_04530	PWY-2161	folate polyglutamylation
C3Y93_04530	PWY-2201	folate transformations I
C3Y93_04530	PWY-3661	glycine betaine degradation I
C3Y93_04530	PWY-3661-1	glycine betaine degradation II (mammalian)
C3Y93_04530	PWY-3841	folate transformations II
C3Y93_04530	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_04925	PWY-6700	queuosine biosynthesis
C3Y93_04965	PWY-7799	C3Y93_04965
C3Y93_04965	PWY-7800	C3Y93_04965
C3Y93_04990	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
C3Y93_04990	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
C3Y93_05030	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
C3Y93_05035	PWY-2201	folate transformations I
C3Y93_05035	PWY-3841	folate transformations II
C3Y93_05050	PWY-1281	sulfoacetaldehyde degradation I
C3Y93_05050	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
C3Y93_05050	PWY-5482	pyruvate fermentation to acetate II
C3Y93_05050	PWY-5485	pyruvate fermentation to acetate IV
C3Y93_05050	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_05050	PWY-6637	sulfolactate degradation II
C3Y93_05050	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
C3Y93_05070	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
C3Y93_05070	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
C3Y93_05070	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
C3Y93_05125	PWY-4983	L-citrulline-nitric oxide cycle
C3Y93_05125	PWY-4984	urea cycle
C3Y93_05125	PWY-5	canavanine biosynthesis
C3Y93_05125	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_05125	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_05145	PWY-5686	UMP biosynthesis
C3Y93_05145	PWY-7790	C3Y93_05145
C3Y93_05145	PWY-7791	C3Y93_05145
C3Y93_05220	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_05220	PWY-7761	C3Y93_05220
C3Y93_05310	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
C3Y93_05310	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
C3Y93_05310	PWY-6936	seleno-amino acid biosynthesis
C3Y93_05310	PWY-702	L-methionine biosynthesis II
C3Y93_05365	PWY-7039	phosphatidate metabolism, as a signaling molecule
C3Y93_05365	PWY-7817	C3Y93_05365
C3Y93_05390	PWY-5386	methylglyoxal degradation I
C3Y93_05390	PWY-7425	2-chloroacrylate degradation I
C3Y93_05470	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_05485	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_05485	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_05510	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_05860	PWY-7183	pyrimidine nucleobases salvage I
C3Y93_06020	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
C3Y93_06060	PWY-4261	glycerol degradation I
C3Y93_06145	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_06145	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
C3Y93_06150	PWY-7396	butanol and isobutanol biosynthesis (engineered)
C3Y93_06150	PWY-7806	C3Y93_06150
C3Y93_06180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
C3Y93_06230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_06230	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_06235	PWY-6749	CMP-legionaminate biosynthesis I
C3Y93_06295	PWY-7801	C3Y93_06295
C3Y93_06300	PWY-7802	C3Y93_06300
C3Y93_06400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
C3Y93_06400	PWY-5723	Rubisco shunt
C3Y93_06420	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
C3Y93_06435	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
C3Y93_06490	PWY-5958	acridone alkaloid biosynthesis
C3Y93_06490	PWY-6543	4-aminobenzoate biosynthesis
C3Y93_06490	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
C3Y93_06490	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
C3Y93_06510	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_06510	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_06510	PWY-7953	C3Y93_06510
C3Y93_06620	PWY-3341	L-proline biosynthesis III
C3Y93_06620	PWY-4981	L-proline biosynthesis II (from arginine)
C3Y93_06620	PWY-6344	L-ornithine degradation II (Stickland reaction)
C3Y93_06630	PWY-4381	fatty acid biosynthesis initiation I
C3Y93_06630	PWY-5743	3-hydroxypropanoate cycle
C3Y93_06630	PWY-5744	glyoxylate assimilation
C3Y93_06630	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_06630	PWY-6722	candicidin biosynthesis
C3Y93_06645	PWY-7980	C3Y93_06645
C3Y93_06715	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
C3Y93_06760	PWY-6654	phosphopantothenate biosynthesis III
C3Y93_06765	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
C3Y93_06765	PWY-6148	tetrahydromethanopterin biosynthesis
C3Y93_06765	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
C3Y93_06765	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_06765	PWY-7852	C3Y93_06765
C3Y93_06765	PWY-7853	C3Y93_06765
C3Y93_06830	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
C3Y93_06830	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
C3Y93_06830	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_06830	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_06830	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
C3Y93_06830	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
C3Y93_06830	PWY-7205	CMP phosphorylation
C3Y93_06830	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
C3Y93_06830	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_06830	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_06830	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_06830	PWY-7224	purine deoxyribonucleosides salvage
C3Y93_06830	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_06830	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
C3Y93_06870	PWY-5057	L-valine degradation II
C3Y93_06870	PWY-5076	L-leucine degradation III
C3Y93_06870	PWY-5078	L-isoleucine degradation II
C3Y93_06870	PWY-5101	L-isoleucine biosynthesis II
C3Y93_06870	PWY-5103	L-isoleucine biosynthesis III
C3Y93_06870	PWY-5104	L-isoleucine biosynthesis IV
C3Y93_06870	PWY-5108	L-isoleucine biosynthesis V
C3Y93_06870	PWY-7767	C3Y93_06870
C3Y93_06880	PWY-5971	palmitate biosynthesis II (bacteria and plants)
C3Y93_06880	PWY-5973	<i>cis</i>-vaccenate biosynthesis
C3Y93_06880	PWY-5989	stearate biosynthesis II (bacteria and plants)
C3Y93_06880	PWY-6113	superpathway of mycolate biosynthesis
C3Y93_06880	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
C3Y93_06880	PWY-6519	8-amino-7-oxononanoate biosynthesis I
C3Y93_06880	PWY-7663	gondoate biosynthesis (anaerobic)
C3Y93_06880	PWY-7664	oleate biosynthesis IV (anaerobic)
C3Y93_06880	PWY-7858	C3Y93_06880
C3Y93_06880	PWYG-321	mycolate biosynthesis
C3Y93_06920	PWY-5987	sorgoleone biosynthesis
C3Y93_06920	PWY-5996	oleate biosynthesis II (animals and fungi)
C3Y93_07055	PWY-3221	dTDP-L-rhamnose biosynthesis II
C3Y93_07055	PWY-6808	dTDP-D-forosamine biosynthesis
C3Y93_07055	PWY-6942	dTDP-D-desosamine biosynthesis
C3Y93_07055	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
C3Y93_07055	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
C3Y93_07055	PWY-6974	dTDP-L-olivose biosynthesis
C3Y93_07055	PWY-6976	dTDP-L-mycarose biosynthesis
C3Y93_07055	PWY-7104	dTDP-L-megosamine biosynthesis
C3Y93_07055	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
C3Y93_07055	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
C3Y93_07055	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
C3Y93_07055	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
C3Y93_07055	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
C3Y93_07055	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
C3Y93_07055	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
C3Y93_07055	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
C3Y93_07055	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
C3Y93_07055	PWY-7688	C3Y93_07055
C3Y93_07055	PWY-7814	C3Y93_07055
C3Y93_07060	PWY-3221	dTDP-L-rhamnose biosynthesis II
C3Y93_07060	PWY-6808	dTDP-D-forosamine biosynthesis
C3Y93_07060	PWY-6942	dTDP-D-desosamine biosynthesis
C3Y93_07060	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
C3Y93_07060	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
C3Y93_07060	PWY-6974	dTDP-L-olivose biosynthesis
C3Y93_07060	PWY-6976	dTDP-L-mycarose biosynthesis
C3Y93_07060	PWY-7104	dTDP-L-megosamine biosynthesis
C3Y93_07060	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
C3Y93_07060	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
C3Y93_07060	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
C3Y93_07060	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
C3Y93_07060	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
C3Y93_07060	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
C3Y93_07060	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
C3Y93_07060	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
C3Y93_07060	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
C3Y93_07060	PWY-7688	C3Y93_07060
C3Y93_07060	PWY-7814	C3Y93_07060
C3Y93_07100	PWY-5103	L-isoleucine biosynthesis III
C3Y93_07100	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_07105	PWY-5101	L-isoleucine biosynthesis II
C3Y93_07105	PWY-5103	L-isoleucine biosynthesis III
C3Y93_07105	PWY-5104	L-isoleucine biosynthesis IV
C3Y93_07105	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
C3Y93_07105	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
C3Y93_07105	PWY-6389	(<i>S</i>)-acetoin biosynthesis
C3Y93_07105	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_07110	PWY-5101	L-isoleucine biosynthesis II
C3Y93_07110	PWY-5103	L-isoleucine biosynthesis III
C3Y93_07110	PWY-5104	L-isoleucine biosynthesis IV
C3Y93_07110	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
C3Y93_07110	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
C3Y93_07110	PWY-6389	(<i>S</i>)-acetoin biosynthesis
C3Y93_07110	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_07165	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_07165	PWY-6549	L-glutamine biosynthesis III
C3Y93_07165	PWY-6728	methylaspartate cycle
C3Y93_07165	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_07165	PWY-7124	ethylene biosynthesis V (engineered)
C3Y93_07165	PWY-7254	TCA cycle VII (acetate-producers)
C3Y93_07165	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
C3Y93_07180	PWY-6700	queuosine biosynthesis
C3Y93_07205	PWY-6700	queuosine biosynthesis
C3Y93_07225	PWY-6012	acyl carrier protein metabolism I
C3Y93_07225	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
C3Y93_07225	PWY-6289	petrobactin biosynthesis
C3Y93_07245	PWY-6936	seleno-amino acid biosynthesis
C3Y93_07355	PWY-6902	chitin degradation II
C3Y93_07355	PWY-7822	C3Y93_07355
C3Y93_07355	PWY-7883	C3Y93_07355
C3Y93_07370	PWY-3341	L-proline biosynthesis III
C3Y93_07370	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
C3Y93_07380	PWY-5482	pyruvate fermentation to acetate II
C3Y93_07380	PWY-5485	pyruvate fermentation to acetate IV
C3Y93_07380	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_07385	PWY-1281	sulfoacetaldehyde degradation I
C3Y93_07385	PWY-5482	pyruvate fermentation to acetate II
C3Y93_07385	PWY-5485	pyruvate fermentation to acetate IV
C3Y93_07385	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_07385	PWY-6637	sulfolactate degradation II
C3Y93_07435	PWY-5392	reductive TCA cycle II
C3Y93_07435	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
C3Y93_07435	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_07435	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_07435	PWY-6728	methylaspartate cycle
C3Y93_07435	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_07435	PWY-7254	TCA cycle VII (acetate-producers)
C3Y93_07435	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
C3Y93_07480	PWY-6871	3-methylbutanol biosynthesis
C3Y93_07490	PWY-5344	L-homocysteine biosynthesis
C3Y93_07545	PWY-3841	folate transformations II
C3Y93_07545	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_07545	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_07545	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
C3Y93_07545	PWY-7199	pyrimidine deoxyribonucleosides salvage
C3Y93_07545	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
C3Y93_07550	PWY-3841	folate transformations II
C3Y93_07550	PWY-6614	tetrahydrofolate biosynthesis
C3Y93_07845	PWY-5667	CDP-diacylglycerol biosynthesis I
C3Y93_07845	PWY-6453	stigma estolide biosynthesis
C3Y93_07845	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
C3Y93_07845	PWY-7587	oleate biosynthesis III (cyanobacteria)
C3Y93_07915	PWY-6891	thiazole biosynthesis II (Bacillus)
C3Y93_07915	PWY-6892	thiazole biosynthesis I (E. coli)
C3Y93_07915	PWY-7560	methylerythritol phosphate pathway II
C3Y93_07920	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_07920	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_07920	PWY-7991	C3Y93_07920
C3Y93_07925	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
C3Y93_07930	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
C3Y93_07940	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
C3Y93_08030	PWY-6854	ethylene biosynthesis III (microbes)
C3Y93_08095	PWY-6829	tRNA methylation (yeast)
C3Y93_08095	PWY-7285	methylwyosine biosynthesis
C3Y93_08095	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
C3Y93_08145	PWY-7560	methylerythritol phosphate pathway II
C3Y93_08150	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_08260	PWY-6164	3-dehydroquinate biosynthesis I
C3Y93_08265	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
C3Y93_08295	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_08295	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_08295	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_08295	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_08305	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_08305	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_08305	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_08310	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_08310	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_08310	PWY-7953	C3Y93_08310
C3Y93_08320	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_08320	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_08345	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_08475	PWY-702	L-methionine biosynthesis II
C3Y93_08540	PWY-6167	flavin biosynthesis II (archaea)
C3Y93_08540	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_08540	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
C3Y93_08540	PWY-7991	C3Y93_08540
C3Y93_08545	PWY-6167	flavin biosynthesis II (archaea)
C3Y93_08545	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_08555	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
C3Y93_08555	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
C3Y93_08555	PWY-6896	thiamin salvage I
C3Y93_08555	PWY-6897	thiamin salvage II
C3Y93_08560	PWY-5269	cardiolipin biosynthesis II
C3Y93_08560	PWY-5668	cardiolipin biosynthesis I
C3Y93_08560	PWY-7817	C3Y93_08560
C3Y93_08565	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
C3Y93_08570	PWY-6749	CMP-legionaminate biosynthesis I
C3Y93_08670	PWY-2421	indole-3-acetate degradation VIII (bacterial)
C3Y93_08670	PWY-5648	2-nitrobenzoate degradation II
C3Y93_08670	PWY-6079	anthranilate degradation I (aerobic)
C3Y93_08675	PWY-2421	indole-3-acetate degradation VIII (bacterial)
C3Y93_08675	PWY-5648	2-nitrobenzoate degradation II
C3Y93_08675	PWY-6079	anthranilate degradation I (aerobic)
C3Y93_08815	PWY-6107	chlorosalicylate degradation
C3Y93_08815	PWY-6183	salicylate degradation I
C3Y93_08815	PWY-6184	methylsalicylate degradation
C3Y93_08920	PWY-6614	tetrahydrofolate biosynthesis
C3Y93_08925	PWY-6749	CMP-legionaminate biosynthesis I
C3Y93_09110	PWY-5108	L-isoleucine biosynthesis V
C3Y93_09110	PWY-5132	humulone biosynthesis
C3Y93_09110	PWY-5133	cohumulone biosynthesis
C3Y93_09110	PWY-6672	<i>cis</i>-genanyl-CoA degradation
C3Y93_09110	PWY-7118	chitin degradation to ethanol
C3Y93_09110	PWY-7857	C3Y93_09110
C3Y93_09125	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
C3Y93_09150	PWY-7805	C3Y93_09150
C3Y93_09150	PWY-7807	C3Y93_09150
C3Y93_09155	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
C3Y93_09155	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
C3Y93_09160	PWY-6749	CMP-legionaminate biosynthesis I
C3Y93_09165	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
C3Y93_09165	PWY-6596	adenosine nucleotides degradation I
C3Y93_09165	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_09190	PWY-6891	thiazole biosynthesis II (Bacillus)
C3Y93_09190	PWY-6892	thiazole biosynthesis I (E. coli)
C3Y93_09190	PWY-7560	methylerythritol phosphate pathway II
C3Y93_09225	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_09225	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_09225	PWY-7953	C3Y93_09225
C3Y93_09230	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_09230	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_09230	PWY-7953	C3Y93_09230
C3Y93_09235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_09235	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_09235	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_09235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_09265	PWY-5686	UMP biosynthesis
C3Y93_09265	PWY-7790	C3Y93_09265
C3Y93_09265	PWY-7791	C3Y93_09265
C3Y93_09360	PWY-6840	homoglutathione biosynthesis
C3Y93_09360	PWY-7255	ergothioneine biosynthesis I (bacteria)
C3Y93_09440	PWY-5669	phosphatidylethanolamine biosynthesis I
C3Y93_09450	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_09500	PWY-2941	L-lysine biosynthesis II
C3Y93_09500	PWY-2942	L-lysine biosynthesis III
C3Y93_09500	PWY-5097	L-lysine biosynthesis VI
C3Y93_09510	PWY-6123	inosine-5'-phosphate biosynthesis I
C3Y93_09510	PWY-6124	inosine-5'-phosphate biosynthesis II
C3Y93_09510	PWY-7234	inosine-5'-phosphate biosynthesis III
C3Y93_09590	PWY-5316	nicotine biosynthesis
C3Y93_09590	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_09590	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
C3Y93_09590	PWY-7342	superpathway of nicotine biosynthesis
C3Y93_09615	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
C3Y93_09615	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
C3Y93_09615	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
C3Y93_09615	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
C3Y93_09615	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
C3Y93_09615	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
C3Y93_09615	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
C3Y93_09615	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
C3Y93_09615	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
C3Y93_09615	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
C3Y93_09645	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_09660	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
C3Y93_09660	PWY-6167	flavin biosynthesis II (archaea)
C3Y93_09660	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_09660	PWY-7863	C3Y93_09660
C3Y93_09670	PWY-7884	C3Y93_09670
C3Y93_09720	PWY-7883	C3Y93_09720
C3Y93_09825	PWY-6599	guanine and guanosine salvage II
C3Y93_09825	PWY-6609	adenine and adenosine salvage III
C3Y93_09825	PWY-6610	adenine and adenosine salvage IV
C3Y93_09825	PWY-6620	guanine and guanosine salvage
C3Y93_09830	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_09830	PWY-6606	guanosine nucleotides degradation II
C3Y93_09830	PWY-6608	guanosine nucleotides degradation III
C3Y93_09830	PWY-7442	drosopterin and aurodrosopterin biosynthesis
C3Y93_09860	PWY-7883	C3Y93_09860
C3Y93_09870	PWY-6123	inosine-5'-phosphate biosynthesis I
C3Y93_09870	PWY-7234	inosine-5'-phosphate biosynthesis III
C3Y93_09915	PWY-5451	acetone degradation I (to methylglyoxal)
C3Y93_09915	PWY-6588	pyruvate fermentation to acetone
C3Y93_09915	PWY-6876	isopropanol biosynthesis
C3Y93_09915	PWY-7466	acetone degradation III (to propane-1,2-diol)
C3Y93_09980	PWY-5101	L-isoleucine biosynthesis II
C3Y93_09980	PWY-5103	L-isoleucine biosynthesis III
C3Y93_09980	PWY-5104	L-isoleucine biosynthesis IV
C3Y93_09980	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_09985	PWY-5101	L-isoleucine biosynthesis II
C3Y93_09985	PWY-5103	L-isoleucine biosynthesis III
C3Y93_09985	PWY-5104	L-isoleucine biosynthesis IV
C3Y93_09985	PWY-7111	pyruvate fermentation to isobutanol (engineered)
C3Y93_10000	PWY-3461	L-tyrosine biosynthesis II
C3Y93_10000	PWY-3462	L-phenylalanine biosynthesis II
C3Y93_10000	PWY-6120	L-tyrosine biosynthesis III
C3Y93_10000	PWY-6627	salinosporamide A biosynthesis
C3Y93_10000	PWY-7626	bacilysin biosynthesis
C3Y93_10025	PWY-1622	formaldehyde assimilation I (serine pathway)
C3Y93_10025	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
C3Y93_10025	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_10025	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_10025	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
C3Y93_10025	PWY-6549	L-glutamine biosynthesis III
C3Y93_10025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
C3Y93_10025	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
C3Y93_10025	PWY-7124	ethylene biosynthesis V (engineered)
C3Y93_10130	PWY-2941	L-lysine biosynthesis II
C3Y93_10130	PWY-2942	L-lysine biosynthesis III
C3Y93_10130	PWY-5097	L-lysine biosynthesis VI
C3Y93_10180	PWY-6143	CMP-pseudaminate biosynthesis
C3Y93_10180	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
C3Y93_10180	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
C3Y93_10180	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
C3Y93_10180	PWY-7719	C3Y93_10180
C3Y93_10190	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
C3Y93_10190	PWY-6143	CMP-pseudaminate biosynthesis
C3Y93_10195	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_10195	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_10195	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_10195	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_10205	PWY-6143	CMP-pseudaminate biosynthesis
C3Y93_10265	PWY-3801	sucrose degradation II (sucrose synthase)
C3Y93_10265	PWY-6527	stachyose degradation
C3Y93_10265	PWY-7238	sucrose biosynthesis II
C3Y93_10265	PWY-7343	UDP-glucose biosynthesis
C3Y93_10265	PWY-7817	C3Y93_10265
C3Y93_10270	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
C3Y93_10270	PWY-7820	C3Y93_10270
C3Y93_10275	PWY-3801	sucrose degradation II (sucrose synthase)
C3Y93_10275	PWY-5054	sorbitol biosynthesis I
C3Y93_10275	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
C3Y93_10275	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
C3Y93_10275	PWY-5659	GDP-mannose biosynthesis
C3Y93_10275	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_10275	PWY-621	sucrose degradation III (sucrose invertase)
C3Y93_10275	PWY-622	starch biosynthesis
C3Y93_10275	PWY-6981	chitin biosynthesis
C3Y93_10275	PWY-6992	1,5-anhydrofructose degradation
C3Y93_10275	PWY-7238	sucrose biosynthesis II
C3Y93_10275	PWY-7347	sucrose biosynthesis III
C3Y93_10275	PWY-7385	1,3-propanediol biosynthesis (engineered)
C3Y93_10280	PWY-3821	galactose degradation III
C3Y93_10280	PWY-6317	galactose degradation I (Leloir pathway)
C3Y93_10280	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
C3Y93_10280	PWY-6527	stachyose degradation
C3Y93_10280	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
C3Y93_10280	PWY-7344	UDP-D-galactose biosynthesis
C3Y93_10285	PWY-6749	CMP-legionaminate biosynthesis I
C3Y93_10365	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
C3Y93_10405	PWY-6339	syringate degradation
C3Y93_10450	PWY-6899	base-degraded thiamin salvage
C3Y93_10450	PWY-7356	thiamin salvage IV (yeast)
C3Y93_10510	PWY-6855	chitin degradation I (archaea)
C3Y93_10510	PWY-6902	chitin degradation II
C3Y93_10510	PWY-7822	C3Y93_10510
C3Y93_10580	PWY-7980	C3Y93_10580
C3Y93_10590	PWY-7980	C3Y93_10590
C3Y93_10785	PWY-7805	C3Y93_10785
C3Y93_10785	PWY-7807	C3Y93_10785
C3Y93_10825	PWY-7991	C3Y93_10825
C3Y93_10835	PWY-6167	flavin biosynthesis II (archaea)
C3Y93_10835	PWY-6168	flavin biosynthesis III (fungi)
C3Y93_10835	PWY-7980	C3Y93_10835
C3Y93_10875	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_10875	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
C3Y93_10875	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_10875	PWY-5723	Rubisco shunt
C3Y93_10875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_10875	PWY-6886	1-butanol autotrophic biosynthesis
C3Y93_10875	PWY-6901	superpathway of glucose and xylose degradation
C3Y93_10875	PWY-7003	glycerol degradation to butanol
C3Y93_10875	PWY-7124	ethylene biosynthesis V (engineered)
C3Y93_10875	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
C3Y93_10940	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_10940	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_10945	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_10945	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_10945	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_10945	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_10975	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
C3Y93_11000	PWY-4983	L-citrulline-nitric oxide cycle
C3Y93_11000	PWY-4984	urea cycle
C3Y93_11000	PWY-5	canavanine biosynthesis
C3Y93_11000	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_11000	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_11015	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_11015	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
C3Y93_11020	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_11020	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
C3Y93_11065	PWY-181	photorespiration
C3Y93_11070	PWY-5958	acridone alkaloid biosynthesis
C3Y93_11070	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
C3Y93_11070	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
C3Y93_11225	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
C3Y93_11225	PWY-6435	4-hydroxybenzoate biosynthesis V
C3Y93_11225	PWY-6863	pyruvate fermentation to hexanol
C3Y93_11225	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
C3Y93_11225	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
C3Y93_11225	PWY-6948	sitosterol degradation to androstenedione
C3Y93_11225	PWY-7094	fatty acid salvage
C3Y93_11225	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
C3Y93_11225	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
C3Y93_11225	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
C3Y93_11225	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
C3Y93_11225	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
C3Y93_11225	PWY-735	jasmonic acid biosynthesis
C3Y93_11225	PWY-7606	docosahexaenoate biosynthesis III (mammals)
C3Y93_11225	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
C3Y93_11225	PWY-7726	C3Y93_11225
C3Y93_11230	PWY-1361	benzoyl-CoA degradation I (aerobic)
C3Y93_11230	PWY-5109	2-methylbutanoate biosynthesis
C3Y93_11230	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
C3Y93_11230	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
C3Y93_11230	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
C3Y93_11230	PWY-5177	glutaryl-CoA degradation
C3Y93_11230	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_11230	PWY-6435	4-hydroxybenzoate biosynthesis V
C3Y93_11230	PWY-6583	pyruvate fermentation to butanol I
C3Y93_11230	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
C3Y93_11230	PWY-6863	pyruvate fermentation to hexanol
C3Y93_11230	PWY-6883	pyruvate fermentation to butanol II
C3Y93_11230	PWY-6944	androstenedione degradation
C3Y93_11230	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
C3Y93_11230	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
C3Y93_11230	PWY-7007	methyl ketone biosynthesis
C3Y93_11230	PWY-7046	4-coumarate degradation (anaerobic)
C3Y93_11230	PWY-7094	fatty acid salvage
C3Y93_11230	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
C3Y93_11230	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
C3Y93_11230	PWY-7292	oleate &beta;-oxidation (thioesterase-dependent, yeast)
C3Y93_11230	PWY-7307	oleate &beta;-oxidation (reductase-dependent, yeast)
C3Y93_11230	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
C3Y93_11230	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
C3Y93_11230	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
C3Y93_11230	PWY-735	jasmonic acid biosynthesis
C3Y93_11230	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
C3Y93_11230	PWY-7606	docosahexaenoate biosynthesis III (mammals)
C3Y93_11230	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
C3Y93_11230	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
C3Y93_11230	PWY-7726	C3Y93_11230
C3Y93_11230	PWY-7778	C3Y93_11230
C3Y93_11230	PWY-7779	C3Y93_11230
C3Y93_11260	PWY-5269	cardiolipin biosynthesis II
C3Y93_11260	PWY-5668	cardiolipin biosynthesis I
C3Y93_11260	PWY-7817	C3Y93_11260
C3Y93_11315	PWY-5532	adenosine nucleotides degradation IV
C3Y93_11315	PWY-7181	pyrimidine deoxyribonucleosides degradation
C3Y93_11330	PWY-7851	C3Y93_11330
C3Y93_11350	PWY-1042	glycolysis IV (plant cytosol)
C3Y93_11350	PWY-5484	glycolysis II (from fructose 6-phosphate)
C3Y93_11350	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_11350	PWY-7003	glycerol degradation to butanol
C3Y93_11460	PWY-5839	menaquinol-7 biosynthesis
C3Y93_11460	PWY-5844	menaquinol-9 biosynthesis
C3Y93_11460	PWY-5849	menaquinol-6 biosynthesis
C3Y93_11460	PWY-5890	menaquinol-10 biosynthesis
C3Y93_11460	PWY-5891	menaquinol-11 biosynthesis
C3Y93_11460	PWY-5892	menaquinol-12 biosynthesis
C3Y93_11460	PWY-5895	menaquinol-13 biosynthesis
C3Y93_11605	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
C3Y93_11605	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
C3Y93_11765	PWY-5162	2-oxopentenoate degradation
C3Y93_11765	PWY-5436	L-threonine degradation IV
C3Y93_11765	PWY-5480	pyruvate fermentation to ethanol I
C3Y93_11765	PWY-6587	pyruvate fermentation to ethanol III
C3Y93_11765	PWY-7085	triethylamine degradation
C3Y93_11765	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
C3Y93_11770	PWY-5162	2-oxopentenoate degradation
C3Y93_11910	PWY-7396	butanol and isobutanol biosynthesis (engineered)
C3Y93_11950	PWY-2941	L-lysine biosynthesis II
C3Y93_11950	PWY-2942	L-lysine biosynthesis III
C3Y93_11950	PWY-5097	L-lysine biosynthesis VI
C3Y93_11950	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_11950	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
C3Y93_11950	PWY-6559	spermidine biosynthesis II
C3Y93_11950	PWY-6562	norspermidine biosynthesis
C3Y93_11950	PWY-7153	grixazone biosynthesis
C3Y93_11950	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_11950	PWY-7977	C3Y93_11950
C3Y93_12050	PWY-2201	folate transformations I
C3Y93_12050	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_12050	PWY-7909	C3Y93_12050
C3Y93_12080	PWY-7731	C3Y93_12080
C3Y93_12145	PWY-1622	formaldehyde assimilation I (serine pathway)
C3Y93_12145	PWY-5392	reductive TCA cycle II
C3Y93_12145	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
C3Y93_12145	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_12145	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_12145	PWY-6728	methylaspartate cycle
C3Y93_12145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_12145	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
C3Y93_12145	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
C3Y93_12180	PWY-5669	phosphatidylethanolamine biosynthesis I
C3Y93_12265	PWY-7892	C3Y93_12265
C3Y93_12300	PWY-7851	C3Y93_12300
C3Y93_12345	PWY-4381	fatty acid biosynthesis initiation I
C3Y93_12345	PWY-5743	3-hydroxypropanoate cycle
C3Y93_12345	PWY-5744	glyoxylate assimilation
C3Y93_12345	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_12345	PWY-6722	candicidin biosynthesis
C3Y93_12350	PWY-2161	folate polyglutamylation
C3Y93_12380	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_12385	PWY-5316	nicotine biosynthesis
C3Y93_12385	PWY-7342	superpathway of nicotine biosynthesis
C3Y93_12570	PWY-1361	benzoyl-CoA degradation I (aerobic)
C3Y93_12570	PWY-5109	2-methylbutanoate biosynthesis
C3Y93_12570	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
C3Y93_12570	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
C3Y93_12570	PWY-5177	glutaryl-CoA degradation
C3Y93_12570	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_12570	PWY-6435	4-hydroxybenzoate biosynthesis V
C3Y93_12570	PWY-6583	pyruvate fermentation to butanol I
C3Y93_12570	PWY-6863	pyruvate fermentation to hexanol
C3Y93_12570	PWY-6883	pyruvate fermentation to butanol II
C3Y93_12570	PWY-6944	androstenedione degradation
C3Y93_12570	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
C3Y93_12570	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
C3Y93_12570	PWY-7007	methyl ketone biosynthesis
C3Y93_12570	PWY-7046	4-coumarate degradation (anaerobic)
C3Y93_12570	PWY-7094	fatty acid salvage
C3Y93_12570	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
C3Y93_12570	PWY-735	jasmonic acid biosynthesis
C3Y93_12570	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
C3Y93_12570	PWY-7606	docosahexaenoate biosynthesis III (mammals)
C3Y93_12570	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
C3Y93_12570	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
C3Y93_12570	PWY-7726	C3Y93_12570
C3Y93_12570	PWY-7778	C3Y93_12570
C3Y93_12570	PWY-7779	C3Y93_12570
C3Y93_12590	PWY-6683	sulfate reduction III (assimilatory)
C3Y93_12600	PWY-2942	L-lysine biosynthesis III
C3Y93_12755	PWY-3961	phosphopantothenate biosynthesis II
C3Y93_12760	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
C3Y93_12760	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
C3Y93_12815	PWY-6519	8-amino-7-oxononanoate biosynthesis I
C3Y93_12820	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
C3Y93_12860	PWY-4381	fatty acid biosynthesis initiation I
C3Y93_12860	PWY-6799	fatty acid biosynthesis (plant mitochondria)
C3Y93_12860	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
C3Y93_12865	PWY-5367	petroselinate biosynthesis
C3Y93_12865	PWY-5971	palmitate biosynthesis II (bacteria and plants)
C3Y93_12865	PWY-5973	<i>cis</i>-vaccenate biosynthesis
C3Y93_12865	PWY-5989	stearate biosynthesis II (bacteria and plants)
C3Y93_12865	PWY-5994	palmitate biosynthesis I (animals and fungi)
C3Y93_12865	PWY-6113	superpathway of mycolate biosynthesis
C3Y93_12865	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
C3Y93_12865	PWY-6519	8-amino-7-oxononanoate biosynthesis I
C3Y93_12865	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
C3Y93_12865	PWY-7663	gondoate biosynthesis (anaerobic)
C3Y93_12865	PWY-7664	oleate biosynthesis IV (anaerobic)
C3Y93_12865	PWY-7858	C3Y93_12865
C3Y93_12865	PWYG-321	mycolate biosynthesis
C3Y93_12885	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
C3Y93_12885	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
C3Y93_12890	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
C3Y93_12890	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_12890	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
C3Y93_12890	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
C3Y93_12890	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_12890	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_12890	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_12890	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
C3Y93_12900	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
C3Y93_12900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_12900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
C3Y93_12900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
C3Y93_12900	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_12900	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
C3Y93_12900	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
C3Y93_12900	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
C3Y93_13045	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
C3Y93_13050	PWY-5194	siroheme biosynthesis
C3Y93_13050	PWY-5196	factor 430 biosynthesis
C3Y93_13050	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
C3Y93_13075	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
C3Y93_13075	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
C3Y93_13130	PWY-5155	&beta;-alanine biosynthesis III
C3Y93_13135	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
C3Y93_13170	PWY-7560	methylerythritol phosphate pathway II
C3Y93_13185	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
C3Y93_13220	PWY-7851	C3Y93_13220
C3Y93_13250	PWY-5381	pyridine nucleotide cycling (plants)
C3Y93_13250	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
C3Y93_13250	PWY-7761	C3Y93_13250
C3Y93_13280	PWY-3781	aerobic respiration I (cytochrome c)
C3Y93_13280	PWY-4302	aerobic respiration III (alternative oxidase pathway)
C3Y93_13280	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
C3Y93_13280	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_13280	PWY-6728	methylaspartate cycle
C3Y93_13280	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_13280	PWY-7254	TCA cycle VII (acetate-producers)
C3Y93_13280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
C3Y93_13290	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
C3Y93_13295	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
C3Y93_13300	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
C3Y93_13300	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
C3Y93_13305	PWY-5392	reductive TCA cycle II
C3Y93_13305	PWY-5537	pyruvate fermentation to acetate V
C3Y93_13305	PWY-5538	pyruvate fermentation to acetate VI
C3Y93_13305	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_13305	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_13305	PWY-6728	methylaspartate cycle
C3Y93_13305	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_13305	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
C3Y93_13310	PWY-5392	reductive TCA cycle II
C3Y93_13310	PWY-5537	pyruvate fermentation to acetate V
C3Y93_13310	PWY-5538	pyruvate fermentation to acetate VI
C3Y93_13310	PWY-5690	TCA cycle II (plants and fungi)
C3Y93_13310	PWY-5913	TCA cycle VI (obligate autotrophs)
C3Y93_13310	PWY-6728	methylaspartate cycle
C3Y93_13310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
C3Y93_13310	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
C3Y93_13355	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_13355	PWY-5686	UMP biosynthesis
C3Y93_13355	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_13355	PWY-7790	C3Y93_13355
C3Y93_13355	PWY-7791	C3Y93_13355
C3Y93_13360	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
C3Y93_13360	PWY-5686	UMP biosynthesis
C3Y93_13360	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
C3Y93_13360	PWY-7790	C3Y93_13360
C3Y93_13360	PWY-7791	C3Y93_13360
C3Y93_13390	PWY-6614	tetrahydrofolate biosynthesis
C3Y93_13430	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
C3Y93_13430	PWY-2201	folate transformations I
C3Y93_13430	PWY-3841	folate transformations II
C3Y93_13430	PWY-5030	L-histidine degradation III
C3Y93_13430	PWY-5497	purine nucleobases degradation II (anaerobic)
C3Y93_13430	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
C3Y93_13430	PWY-7909	C3Y93_13430
C3Y93_13450	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
C3Y93_13540	PWY-2201	folate transformations I
C3Y93_13540	PWY-3841	folate transformations II
C3Y93_13540	PWY-7977	C3Y93_13540
C3Y93_13580	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
C3Y93_13580	PWY-5743	3-hydroxypropanoate cycle
C3Y93_13580	PWY-5744	glyoxylate assimilation
C3Y93_13580	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
C3Y93_13580	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
C3Y93_13580	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
C3Y93_13580	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
C3Y93_13605	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
C3Y93_13605	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
C3Y93_13605	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
C3Y93_13605	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
C3Y93_13670	PWY-5278	sulfite oxidation III
C3Y93_13670	PWY-5340	sulfate activation for sulfonation
C3Y93_13670	PWY-6683	sulfate reduction III (assimilatory)
C3Y93_13670	PWY-6932	selenate reduction
C3Y93_13675	PWY-5278	sulfite oxidation III
C3Y93_13675	PWY-5340	sulfate activation for sulfonation
C3Y93_13675	PWY-6683	sulfate reduction III (assimilatory)
C3Y93_13675	PWY-6932	selenate reduction
C3Y93_13715	PWY-5418	phenol degradation I (aerobic)
C3Y93_13715	PWY-6197	chlorinated phenols degradation
C3Y93_13735	PWY-5418	phenol degradation I (aerobic)
C3Y93_13735	PWY-6197	chlorinated phenols degradation
C3Y93_13770	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
C3Y93_13770	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
C3Y93_13770	PWY-7766	C3Y93_13770
C3Y93_13795	PWY-5663	tetrahydrobiopterin biosynthesis I
C3Y93_13795	PWY-5664	tetrahydrobiopterin biosynthesis II
C3Y93_13795	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
C3Y93_13795	PWY-6703	preQ<sub>0</sub> biosynthesis
C3Y93_13795	PWY-6983	tetrahydrobiopterin biosynthesis III
C3Y93_13795	PWY-7442	drosopterin and aurodrosopterin biosynthesis
C3Y93_13795	PWY-7852	C3Y93_13795
C3Y93_13815	PWY-5958	acridone alkaloid biosynthesis
C3Y93_13815	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
C3Y93_13815	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
C3Y93_13820	PWY-381	nitrate reduction II (assimilatory)
C3Y93_13820	PWY-5675	nitrate reduction V (assimilatory)
C3Y93_13820	PWY-6549	L-glutamine biosynthesis III
C3Y93_13820	PWY-6963	ammonia assimilation cycle I
C3Y93_13820	PWY-6964	ammonia assimilation cycle II
C3Y93_13825	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
C3Y93_13825	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
C3Y93_13825	PWY-6148	tetrahydromethanopterin biosynthesis
C3Y93_13825	PWY-7742	C3Y93_13825
C3Y93_13825	PWY-7745	C3Y93_13825
C3Y93_13825	PWY-7929	C3Y93_13825
C3Y93_13825	PWY-7934	C3Y93_13825
C3Y93_13825	PWY-7935	C3Y93_13825
C3Y93_13865	PWY-6854	ethylene biosynthesis III (microbes)
C3Y93_13900	PWY-2941	L-lysine biosynthesis II
C3Y93_13900	PWY-2942	L-lysine biosynthesis III
C3Y93_13900	PWY-5097	L-lysine biosynthesis VI
C3Y93_13905	PWY-2941	L-lysine biosynthesis II
C3Y93_13905	PWY-5097	L-lysine biosynthesis VI
C3Y93_14035	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
C3Y93_14035	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
C3Y93_14040	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
C3Y93_14040	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
C3Y93_14040	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
