locus-tag class description AMD27_00005 PF11638 DnaA N-terminal domain AMD27_00005 PF08299 Bacterial dnaA protein helix-turn-helix AMD27_00005 PF00308 Bacterial dnaA protein AMD27_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD27_00010 PF02767 DNA polymerase III beta subunit, central domain AMD27_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD27_00015 PF02463 RecF/RecN/SMC N terminal domain AMD27_00020 PF01751 Toprim domain AMD27_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_00020 PF18053 DNA gyrase B subunit insert domain AMD27_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AMD27_00020 PF00204 DNA gyrase B AMD27_00040 PF01521 Iron-sulphur cluster biosynthesis AMD27_00045 PF00561 alpha/beta hydrolase fold AMD27_00050 PF03702 Anhydro-N-acetylmuramic acid kinase AMD27_00055 PF00579 tRNA synthetases class I (W and Y) AMD27_00060 PF12848 ABC transporter AMD27_00060 PF00005 ABC transporter AMD27_00070 PF13411 MerR HTH family regulatory protein AMD27_00075 PF00012 Hsp70 protein AMD27_00080 PF01025 GrpE AMD27_00095 PF07859 alpha/beta hydrolase fold AMD27_00100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD27_00130 PF07690 Major Facilitator Superfamily AMD27_00135 PF00171 Aldehyde dehydrogenase family AMD27_00140 PF06940 Domain of unknown function (DUF1287) AMD27_00145 PF00209 Sodium:neurotransmitter symporter family AMD27_00155 PF01189 16S rRNA methyltransferase RsmB/F AMD27_00155 PF01029 NusB family AMD27_00160 PF00551 Formyl transferase AMD27_00160 PF02911 Formyl transferase, C-terminal domain AMD27_00165 PF05658 Head domain of trimeric autotransporter adhesin AMD27_00165 PF05658 Head domain of trimeric autotransporter adhesin AMD27_00165 PF03895 YadA-like membrane anchor domain AMD27_00165 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_00165 PF13018 Extended Signal Peptide of Type V secretion system AMD27_00165 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_00165 PF05658 Head domain of trimeric autotransporter adhesin AMD27_00165 PF03895 YadA-like membrane anchor domain AMD27_00165 PF13018 Extended Signal Peptide of Type V secretion system AMD27_00165 PF03895 YadA-like membrane anchor domain AMD27_00165 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_00165 PF13018 Extended Signal Peptide of Type V secretion system AMD27_00170 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_00170 PF05658 Head domain of trimeric autotransporter adhesin AMD27_00170 PF03895 YadA-like membrane anchor domain AMD27_00170 PF13018 Extended Signal Peptide of Type V secretion system AMD27_00175 PF00691 OmpA family AMD27_00175 PF01389 OmpA-like transmembrane domain AMD27_00190 PF00920 Dehydratase family AMD27_00215 PF00860 Permease family AMD27_00220 PF00990 Diguanylate cyclase, GGDEF domain AMD27_00220 PF17151 Periplasmic sensor domain AMD27_00225 PF00311 Phosphoenolpyruvate carboxylase AMD27_00235 PF13533 Biotin-lipoyl like AMD27_00240 PF00873 AcrB/AcrD/AcrF family AMD27_00250 PF00226 DnaJ domain AMD27_00250 PF01556 DnaJ C terminal domain AMD27_00250 PF00684 DnaJ central domain AMD27_00260 PF00106 short chain dehydrogenase AMD27_00265 PF13419 Haloacid dehalogenase-like hydrolase AMD27_00275 PF01323 DSBA-like thioredoxin domain AMD27_00280 PF00440 Bacterial regulatory proteins, tetR family AMD27_00285 PF00970 Oxidoreductase FAD-binding domain AMD27_00285 PF00042 Globin AMD27_00285 PF00175 Oxidoreductase NAD-binding domain AMD27_00290 PF00487 Fatty acid desaturase AMD27_00310 PF01138 3' exoribonuclease family, domain 1 AMD27_00310 PF03725 3' exoribonuclease family, domain 2 AMD27_00325 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD27_00325 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD27_00330 PF01510 N-acetylmuramoyl-L-alanine amidase AMD27_00335 PF03023 Lipid II flippase MurJ AMD27_00340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD27_00340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_00345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD27_00345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_00350 PF02706 Chain length determinant protein AMD27_00350 PF13807 G-rich domain on putative tyrosine kinase AMD27_00350 PF13614 AAA domain AMD27_00355 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD27_00360 PF02563 Polysaccharide biosynthesis/export protein AMD27_00360 PF10531 SLBB domain AMD27_00360 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMD27_00365 PF16363 GDP-mannose 4,6 dehydratase AMD27_00370 PF04321 RmlD substrate binding domain AMD27_00375 PF00483 Nucleotidyl transferase AMD27_00380 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD27_00385 PF01943 Polysaccharide biosynthesis protein AMD27_00390 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD27_00400 PF00535 Glycosyl transferase family 2 AMD27_00410 PF00535 Glycosyl transferase family 2 AMD27_00415 PF12464 Maltose acetyltransferase AMD27_00415 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_00420 PF01370 NAD dependent epimerase/dehydratase family AMD27_00430 PF02397 Bacterial sugar transferase AMD27_00435 PF00483 Nucleotidyl transferase AMD27_00440 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD27_00440 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD27_00440 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD27_00445 PF00342 Phosphoglucose isomerase AMD27_00450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD27_00450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD27_00450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD27_00450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD27_00465 PF01722 BolA-like protein AMD27_00485 PF09335 SNARE associated Golgi protein AMD27_00490 PF07681 DoxX AMD27_00495 PF02540 NAD synthase AMD27_00495 PF00958 GMP synthase C terminal domain AMD27_00495 PF00117 Glutamine amidotransferase class-I AMD27_00500 PF14338 Mrr N-terminal domain AMD27_00500 PF04471 Restriction endonuclease AMD27_00505 PF05726 Pirin C-terminal cupin domain AMD27_00505 PF02678 Pirin AMD27_00520 PF00561 alpha/beta hydrolase fold AMD27_00525 PF12833 Helix-turn-helix domain AMD27_00540 PF05746 DALR anticodon binding domain AMD27_00540 PF03485 Arginyl tRNA synthetase N terminal domain AMD27_00540 PF00750 tRNA synthetases class I (R) AMD27_00555 PF03949 Malic enzyme, NAD binding domain AMD27_00555 PF00390 Malic enzyme, N-terminal domain AMD27_00565 PF04717 Type VI secretion system, phage-baseplate injector AMD27_00585 PF04261 Dyp-type peroxidase family AMD27_00590 PF01810 LysE type translocator AMD27_00595 PF01810 LysE type translocator AMD27_00600 PF00950 ABC 3 transport family AMD27_00605 PF00005 ABC transporter AMD27_00625 PF00119 ATP synthase A chain AMD27_00630 PF00137 ATP synthase subunit C AMD27_00635 PF00430 ATP synthase B/B' CF(0) AMD27_00640 PF00213 ATP synthase delta (OSCP) subunit AMD27_00645 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD27_00645 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD27_00645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD27_00650 PF00231 ATP synthase AMD27_00655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD27_00655 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD27_00660 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD27_00690 PF00255 Glutathione peroxidase AMD27_00705 PF01300 Telomere recombination AMD27_00710 PF17782 DprA winged helix domain AMD27_00710 PF02481 DNA recombination-mediator protein A AMD27_00715 PF01476 LysM domain AMD27_00720 PF01327 Polypeptide deformylase AMD27_00770 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_00790 PF07690 Major Facilitator Superfamily AMD27_00795 PF07690 Major Facilitator Superfamily AMD27_00805 PF08497 Radical SAM N-terminal AMD27_00805 PF04055 Radical SAM superfamily AMD27_00805 PF11842 Domain of unknown function (DUF3362) AMD27_00820 PF00817 impB/mucB/samB family AMD27_00820 PF11798 IMS family HHH motif AMD27_00820 PF11799 impB/mucB/samB family C-terminal domain AMD27_00830 PF07690 Major Facilitator Superfamily AMD27_00835 PF03641 Possible lysine decarboxylase AMD27_00840 PF03741 Integral membrane protein TerC family AMD27_00840 PF03471 Transporter associated domain AMD27_00845 PF02810 SEC-C motif AMD27_00850 PF03458 UPF0126 domain AMD27_00855 PF07690 Major Facilitator Superfamily AMD27_00860 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD27_00860 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD27_00865 PF00501 AMP-binding enzyme AMD27_00865 PF13193 AMP-binding enzyme C-terminal domain AMD27_00880 PF00719 Inorganic pyrophosphatase AMD27_00885 PF03573 outer membrane porin, OprD family AMD27_00900 PF01078 Magnesium chelatase, subunit ChlI AMD27_00900 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD27_00910 PF00543 Nitrogen regulatory protein P-II AMD27_00915 PF00909 Ammonium Transporter Family AMD27_00920 PF03477 ATP cone domain AMD27_00925 PF01872 RibD C-terminal domain AMD27_00925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD27_00935 PF00677 Lumazine binding domain AMD27_00940 PF09335 SNARE associated Golgi protein AMD27_00960 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD27_00960 PF00883 Cytosol aminopeptidase family, catalytic domain AMD27_00965 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD27_00970 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD27_00975 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMD27_00975 PF01676 Metalloenzyme superfamily AMD27_00980 PF17820 PDZ domain AMD27_00980 PF03572 Peptidase family S41 AMD27_00980 PF01471 Putative peptidoglycan binding domain AMD27_00985 PF02954 Bacterial regulatory protein, Fis family AMD27_00985 PF00158 Sigma-54 interaction domain AMD27_00985 PF00072 Response regulator receiver domain AMD27_00990 PF00512 His Kinase A (phospho-acceptor) domain AMD27_00990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_00995 PF00196 Bacterial regulatory proteins, luxR family AMD27_00995 PF00072 Response regulator receiver domain AMD27_01000 PF00768 D-alanyl-D-alanine carboxypeptidase AMD27_01010 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_01015 PF03447 Homoserine dehydrogenase, NAD binding domain AMD27_01015 PF00742 Homoserine dehydrogenase AMD27_01015 PF01842 ACT domain AMD27_01020 PF10411 Disulfide bond isomerase protein N-terminus AMD27_01020 PF13098 Thioredoxin-like domain AMD27_01025 PF00589 Phage integrase family AMD27_01025 PF02899 Phage integrase, N-terminal SAM-like domain AMD27_01035 PF07664 Ferrous iron transport protein B C terminus AMD27_01035 PF07670 Nucleoside recognition AMD27_01035 PF02421 Ferrous iron transport protein B AMD27_01045 PF02875 Mur ligase family, glutamate ligase domain AMD27_01045 PF08245 Mur ligase middle domain AMD27_01050 PF01098 Cell cycle protein AMD27_01060 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD27_01065 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD27_01070 PF00149 Calcineurin-like phosphoesterase AMD27_01075 PF00293 NUDIX domain AMD27_01080 PF13667 ThiC-associated domain AMD27_01080 PF01964 Radical SAM ThiC family AMD27_01095 PF01895 PhoU domain AMD27_01100 PF04362 Bacterial Fe(2+) trafficking AMD27_01105 PF14698 Argininosuccinate lyase C-terminal AMD27_01105 PF00206 Lyase AMD27_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_01110 PF06580 Histidine kinase AMD27_01115 PF04397 LytTr DNA-binding domain AMD27_01115 PF00072 Response regulator receiver domain AMD27_01120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD27_01120 PF03900 Porphobilinogen deaminase, C-terminal domain AMD27_01145 PF00816 H-NS histone family AMD27_01160 PF03958 Bacterial type II/III secretion system short domain AMD27_01160 PF00263 Bacterial type II and III secretion system protein AMD27_01165 PF16697 Inner membrane component of T3SS, cytoplasmic domain AMD27_01170 PF13419 Haloacid dehalogenase-like hydrolase AMD27_01175 PF04715 Anthranilate synthase component I, N terminal region AMD27_01175 PF00425 chorismate binding enzyme AMD27_01200 PF03143 Elongation factor Tu C-terminal domain AMD27_01200 PF03144 Elongation factor Tu domain 2 AMD27_01200 PF00009 Elongation factor Tu GTP binding domain AMD27_01210 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD27_01215 PF02357 Transcription termination factor nusG AMD27_01215 PF00467 KOW motif AMD27_01220 PF00298 Ribosomal protein L11, RNA binding domain AMD27_01220 PF03946 Ribosomal protein L11, N-terminal domain AMD27_01225 PF00687 Ribosomal protein L1p/L10e family AMD27_01230 PF00466 Ribosomal protein L10 AMD27_01235 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD27_01235 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD27_01240 PF04563 RNA polymerase beta subunit AMD27_01240 PF04561 RNA polymerase Rpb2, domain 2 AMD27_01240 PF04565 RNA polymerase Rpb2, domain 3 AMD27_01240 PF10385 RNA polymerase beta subunit external 1 domain AMD27_01240 PF00562 RNA polymerase Rpb2, domain 6 AMD27_01240 PF04560 RNA polymerase Rpb2, domain 7 AMD27_01245 PF04983 RNA polymerase Rpb1, domain 3 AMD27_01245 PF05000 RNA polymerase Rpb1, domain 4 AMD27_01245 PF04998 RNA polymerase Rpb1, domain 5 AMD27_01245 PF00623 RNA polymerase Rpb1, domain 2 AMD27_01245 PF04997 RNA polymerase Rpb1, domain 1 AMD27_01265 PF00561 alpha/beta hydrolase fold AMD27_01270 PF03553 Na+/H+ antiporter family AMD27_01270 PF13726 Na+-H+ antiporter family AMD27_01275 PF03922 OmpW family AMD27_01285 PF00183 Hsp90 protein AMD27_01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_01305 PF01323 DSBA-like thioredoxin domain AMD27_01315 PF00990 Diguanylate cyclase, GGDEF domain AMD27_01335 PF00108 Thiolase, N-terminal domain AMD27_01335 PF02803 Thiolase, C-terminal domain AMD27_01340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD27_01340 PF00378 Enoyl-CoA hydratase/isomerase AMD27_01340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD27_01350 PF11724 YvbH-like oligomerisation region AMD27_01350 PF08000 Bacterial PH domain AMD27_01360 PF08459 UvrC Helix-hairpin-helix N-terminal AMD27_01360 PF02151 UvrB/uvrC motif AMD27_01360 PF01541 GIY-YIG catalytic domain AMD27_01370 PF01066 CDP-alcohol phosphatidyltransferase AMD27_01395 PF04632 Fusaric acid resistance protein family AMD27_01405 PF13533 Biotin-lipoyl like AMD27_01410 PF03652 Holliday junction resolvase AMD27_01415 PF02622 Uncharacterized ACR, COG1678 AMD27_01420 PF02463 RecF/RecN/SMC N terminal domain AMD27_01430 PF06865 Pyrimidine/purine nucleoside phosphorylase AMD27_01435 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD27_01435 PF00588 SpoU rRNA Methylase family AMD27_01445 PF01121 Dephospho-CoA kinase AMD27_01450 PF06750 Bacterial Peptidase A24 N-terminal domain AMD27_01450 PF01478 Type IV leader peptidase family AMD27_01455 PF00482 Type II secretion system (T2SS), protein F AMD27_01460 PF00437 Type II/IV secretion system protein AMD27_01460 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD27_01465 PF00121 Triosephosphate isomerase AMD27_01470 PF03840 Preprotein translocase SecG subunit AMD27_01500 PF17384 RimP C-terminal SH3 domain AMD27_01500 PF02576 RimP N-terminal domain AMD27_01505 PF13184 NusA-like KH domain AMD27_01505 PF00575 S1 RNA binding domain AMD27_01505 PF08529 NusA N-terminal domain AMD27_01510 PF04760 Translation initiation factor IF-2, N-terminal region AMD27_01510 PF08364 Bacterial translation initiation factor IF-2 associated region AMD27_01510 PF11987 Translation-initiation factor 2 AMD27_01510 PF00009 Elongation factor Tu GTP binding domain AMD27_01515 PF02033 Ribosome-binding factor A AMD27_01525 PF04011 LemA family AMD27_01530 PF04536 TPM domain AMD27_01540 PF07963 Prokaryotic N-terminal methylation motif AMD27_01540 PF00114 Pilin (bacterial filament) AMD27_01545 PF15864 Protein glycosylation ligase AMD27_01545 PF04932 O-Antigen ligase AMD27_01545 PF11846 Virulence factor membrane-bound polymerase, C-terminal AMD27_01550 PF07963 Prokaryotic N-terminal methylation motif AMD27_01550 PF00114 Pilin (bacterial filament) AMD27_01555 PF04932 O-Antigen ligase AMD27_01555 PF15864 Protein glycosylation ligase AMD27_01555 PF11846 Virulence factor membrane-bound polymerase, C-terminal AMD27_01560 PF00210 Ferritin-like domain AMD27_01565 PF04324 BFD-like [2Fe-2S] binding domain AMD27_01570 PF01042 Endoribonuclease L-PSP AMD27_01575 PF04607 Region found in RelA / SpoT proteins AMD27_01575 PF02824 TGS domain AMD27_01575 PF13291 ACT domain AMD27_01580 PF01192 RNA polymerase Rpb6 AMD27_01585 PF00625 Guanylate kinase AMD27_01590 PF02401 LytB protein AMD27_01595 PF00114 Pilin (bacterial filament) AMD27_01595 PF07963 Prokaryotic N-terminal methylation motif AMD27_01620 PF00114 Pilin (bacterial filament) AMD27_01620 PF07963 Prokaryotic N-terminal methylation motif AMD27_01660 PF07963 Prokaryotic N-terminal methylation motif AMD27_01660 PF00114 Pilin (bacterial filament) AMD27_01665 PF00886 Ribosomal protein S16 AMD27_01670 PF05239 PRC-barrel domain AMD27_01670 PF01782 RimM N-terminal domain AMD27_01675 PF01746 tRNA (Guanine-1)-methyltransferase AMD27_01680 PF01245 Ribosomal protein L19 AMD27_01685 PF00561 alpha/beta hydrolase fold AMD27_01690 PF00561 alpha/beta hydrolase fold AMD27_01695 PF00561 alpha/beta hydrolase fold AMD27_01700 PF00561 alpha/beta hydrolase fold AMD27_01705 PF03280 Proteobacterial lipase chaperone protein AMD27_01710 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD27_01710 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD27_01710 PF09157 Pseudouridine synthase II TruB, C-terminal AMD27_01715 PF01925 Sulfite exporter TauE/SafE AMD27_01725 PF00892 EamA-like transporter family AMD27_01730 PF00892 EamA-like transporter family AMD27_01735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD27_01735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD27_01740 PF01565 FAD binding domain AMD27_01740 PF02913 FAD linked oxidases, C-terminal domain AMD27_01750 PF07690 Major Facilitator Superfamily AMD27_01755 PF12823 Domain of unknown function (DUF3817) AMD27_01765 PF12805 FUSC-like inner membrane protein yccS AMD27_01775 PF00080 Copper/zinc superoxide dismutase (SODC) AMD27_01780 PF01594 AI-2E family transporter AMD27_01785 PF13614 AAA domain AMD27_01810 PF08241 Methyltransferase domain AMD27_01860 PF05746 DALR anticodon binding domain AMD27_01860 PF02092 Glycyl-tRNA synthetase beta subunit AMD27_01865 PF02091 Glycyl-tRNA synthetase alpha subunit AMD27_01885 PF04024 PspC domain AMD27_01905 PF13193 AMP-binding enzyme C-terminal domain AMD27_01905 PF00501 AMP-binding enzyme AMD27_01910 PF00575 S1 RNA binding domain AMD27_01910 PF10150 Ribonuclease E/G family AMD27_01910 PF12111 Polyribonucleotide phosphorylase C terminal AMD27_01915 PF01479 S4 domain AMD27_01915 PF00849 RNA pseudouridylate synthase AMD27_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_01920 PF03466 LysR substrate binding domain AMD27_01935 PF12706 Beta-lactamase superfamily domain AMD27_01940 PF06628 Catalase-related immune-responsive AMD27_01940 PF00199 Catalase AMD27_01945 PF18158 Adaptive response protein AidB N-terminal domain AMD27_01945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_01945 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_01955 PF02896 PEP-utilising enzyme, TIM barrel domain AMD27_01955 PF00391 PEP-utilising enzyme, mobile domain AMD27_01955 PF05524 PEP-utilising enzyme, N-terminal AMD27_01955 PF01590 GAF domain AMD27_01960 PF00293 NUDIX domain AMD27_01990 PF03466 LysR substrate binding domain AMD27_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_02000 PF00330 Aconitase family (aconitate hydratase) AMD27_02005 PF00694 Aconitase C-terminal domain AMD27_02015 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD27_02030 PF01176 Translation initiation factor 1A / IF-1 AMD27_02040 PF01416 tRNA pseudouridine synthase AMD27_02060 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD27_02060 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD27_02070 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD27_02080 PF01774 UreD urease accessory protein AMD27_02085 PF00547 Urease, gamma subunit AMD27_02090 PF00699 Urease beta subunit AMD27_02095 PF00449 Urease alpha-subunit, N-terminal domain AMD27_02095 PF01979 Amidohydrolase family AMD27_02110 PF00293 NUDIX domain AMD27_02110 PF13344 Haloacid dehalogenase-like hydrolase AMD27_02115 PF00959 Phage lysozyme AMD27_02125 PF05194 UreE urease accessory protein, C-terminal domain AMD27_02125 PF02814 UreE urease accessory protein, N-terminal domain AMD27_02130 PF01730 UreF AMD27_02135 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD27_02145 PF04102 SlyX AMD27_02155 PF13737 Transposase DDE domain AMD27_02165 PF08272 Topoisomerase I zinc-ribbon-like AMD27_02165 PF01751 Toprim domain AMD27_02165 PF01396 Topoisomerase DNA binding C4 zinc finger AMD27_02165 PF01131 DNA topoisomerase AMD27_02170 PF02595 Glycerate kinase family AMD27_02180 PF00580 UvrD/REP helicase N-terminal domain AMD27_02180 PF13361 UvrD-like helicase C-terminal domain AMD27_02200 PF00999 Sodium/hydrogen exchanger family AMD27_02200 PF02254 TrkA-N domain AMD27_02205 PF00471 Ribosomal protein L33 AMD27_02210 PF00830 Ribosomal L28 family AMD27_02215 PF00171 Aldehyde dehydrogenase family AMD27_02220 PF00440 Bacterial regulatory proteins, tetR family AMD27_02220 PF08360 QacR-like protein, C-terminal region AMD27_02225 PF00551 Formyl transferase AMD27_02225 PF01842 ACT domain AMD27_02235 PF01618 MotA/TolQ/ExbB proton channel family AMD27_02245 PF01625 Peptide methionine sulfoxide reductase AMD27_02260 PF00186 Dihydrofolate reductase AMD27_02265 PF00303 Thymidylate synthase AMD27_02285 PF01790 Prolipoprotein diacylglyceryl transferase AMD27_02300 PF00902 Sec-independent protein translocase protein (TatC) AMD27_02310 PF02416 mttA/Hcf106 family AMD27_02320 PF01725 Ham1 family AMD27_02330 PF07021 Methionine biosynthesis protein MetW AMD27_02330 PF00561 alpha/beta hydrolase fold AMD27_02335 PF00561 alpha/beta hydrolase fold AMD27_02340 PF08502 LeuA allosteric (dimerisation) domain AMD27_02340 PF00682 HMGL-like AMD27_02345 PF18331 PKHD-type hydroxylase C-terminal domain AMD27_02345 PF13640 2OG-Fe(II) oxygenase superfamily AMD27_02350 PF00593 TonB dependent receptor AMD27_02350 PF07715 TonB-dependent Receptor Plug Domain AMD27_02360 PF13359 DDE superfamily endonuclease AMD27_02360 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_02365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_02365 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD27_02365 PF05697 Bacterial trigger factor protein (TF) AMD27_02370 PF00574 Clp protease AMD27_02375 PF10431 C-terminal, D2-small domain, of ClpB protein AMD27_02375 PF07724 AAA domain (Cdc48 subfamily) AMD27_02375 PF06689 ClpX C4-type zinc finger AMD27_02390 PF05683 Fumarase C-terminus AMD27_02390 PF05681 Fumarate hydratase (Fumerase) AMD27_02405 PF07085 DRTGG domain AMD27_02405 PF01515 Phosphate acetyl/butaryl transferase AMD27_02410 PF00871 Acetokinase family AMD27_02420 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_02420 PF13359 DDE superfamily endonuclease AMD27_02430 PF00171 Aldehyde dehydrogenase family AMD27_02445 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD27_02450 PF17804 Tail specific protease N-terminal domain AMD27_02450 PF03572 Peptidase family S41 AMD27_02450 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD27_02450 PF00595 PDZ domain AMD27_02455 PF03707 Bacterial signalling protein N terminal repeat AMD27_02455 PF00990 Diguanylate cyclase, GGDEF domain AMD27_02455 PF00563 EAL domain AMD27_02460 PF16658 Class II release factor RF3, C-terminal domain AMD27_02460 PF03144 Elongation factor Tu domain 2 AMD27_02460 PF00009 Elongation factor Tu GTP binding domain AMD27_02475 PF01026 TatD related DNase AMD27_02480 PF00330 Aconitase family (aconitate hydratase) AMD27_02480 PF00694 Aconitase C-terminal domain AMD27_02490 PF00899 ThiF family AMD27_02495 PF01207 Dihydrouridine synthase (Dus) AMD27_02505 PF15608 PELOTA RNA binding domain AMD27_02505 PF11202 Phosphoribosyl transferase (PRTase) AMD27_02525 PF02342 TerD domain AMD27_02530 PF02342 TerD domain AMD27_02535 PF02342 TerD domain AMD27_02540 PF10138 vWA found in TerF C terminus AMD27_02545 PF01987 Mitochondrial biogenesis AIM24 AMD27_02550 PF02342 TerD domain AMD27_02555 PF07690 Major Facilitator Superfamily AMD27_02565 PF00376 MerR family regulatory protein AMD27_02565 PF09278 MerR, DNA binding AMD27_02575 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD27_02575 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD27_02580 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD27_02585 PF02233 NAD(P) transhydrogenase beta subunit AMD27_02595 PF01261 Xylose isomerase-like TIM barrel AMD27_02600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD27_02600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD27_02605 PF00378 Enoyl-CoA hydratase/isomerase AMD27_02610 PF00672 HAMP domain AMD27_02610 PF01627 Hpt domain AMD27_02610 PF00072 Response regulator receiver domain AMD27_02610 PF00512 His Kinase A (phospho-acceptor) domain AMD27_02610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD27_02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_02615 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_02625 PF05958 tRNA (Uracil-5-)-methyltransferase AMD27_02630 PF04607 Region found in RelA / SpoT proteins AMD27_02630 PF02824 TGS domain AMD27_02630 PF13291 ACT domain AMD27_02635 PF00106 short chain dehydrogenase AMD27_02640 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD27_02650 PF12626 Polymerase A arginine-rich C-terminus AMD27_02650 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD27_02650 PF01743 Poly A polymerase head domain AMD27_02655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD27_02660 PF02548 Ketopantoate hydroxymethyltransferase AMD27_02665 PF02569 Pantoate-beta-alanine ligase AMD27_02670 PF03668 P-loop ATPase protein family AMD27_02675 PF00381 PTS HPr component phosphorylation site AMD27_02680 PF04751 Protein of unknown function (DUF615) AMD27_02690 PF13193 AMP-binding enzyme C-terminal domain AMD27_02690 PF00501 AMP-binding enzyme AMD27_02695 PF01645 Conserved region in glutamate synthase AMD27_02695 PF13187 4Fe-4S dicluster domain AMD27_02705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD27_02705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD27_02705 PF03129 Anticodon binding domain AMD27_02705 PF02824 TGS domain AMD27_02710 PF00707 Translation initiation factor IF-3, C-terminal domain AMD27_02710 PF05198 Translation initiation factor IF-3, N-terminal domain AMD27_02715 PF00011 Hsp20/alpha crystallin family AMD27_02720 PF02798 Glutathione S-transferase, N-terminal domain AMD27_02720 PF00043 Glutathione S-transferase, C-terminal domain AMD27_02730 PF09335 SNARE associated Golgi protein AMD27_02740 PF01632 Ribosomal protein L35 AMD27_02745 PF00453 Ribosomal protein L20 AMD27_02775 PF01409 tRNA synthetases class II core domain (F) AMD27_02775 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD27_02780 PF03483 B3/4 domain AMD27_02780 PF03484 tRNA synthetase B5 domain AMD27_02780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD27_02780 PF03147 Ferredoxin-fold anticodon binding domain AMD27_02780 PF01588 Putative tRNA binding domain AMD27_02785 PF00216 Bacterial DNA-binding protein AMD27_02795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD27_02795 PF07497 Rho termination factor, RNA-binding domain AMD27_02795 PF07498 Rho termination factor, N-terminal domain AMD27_02800 PF00085 Thioredoxin AMD27_02805 PF02541 Ppx/GppA phosphatase family AMD27_02810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD27_02815 PF01171 PP-loop family AMD27_02815 PF11734 TilS substrate C-terminal domain AMD27_02815 PF09179 TilS substrate binding domain AMD27_02820 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD27_02820 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD27_02825 PF02325 YGGT family AMD27_02830 PF01612 3'-5' exonuclease AMD27_02830 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD27_02830 PF00476 DNA polymerase family A AMD27_02830 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD27_02850 PF00437 Type II/IV secretion system protein AMD27_02865 PF02566 OsmC-like protein AMD27_02870 PF00795 Carbon-nitrogen hydrolase AMD27_02915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_02915 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_02915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_02920 PF17932 Tetracyclin repressor-like, C-terminal domain AMD27_02920 PF00440 Bacterial regulatory proteins, tetR family AMD27_02935 PF01039 Carboxyl transferase domain AMD27_02940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_02940 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_02940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_02950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD27_02950 PF00289 Biotin carboxylase, N-terminal domain AMD27_02950 PF00364 Biotin-requiring enzyme AMD27_02950 PF02785 Biotin carboxylase C-terminal domain AMD27_02980 PF04386 Stringent starvation protein B AMD27_02985 PF00043 Glutathione S-transferase, C-terminal domain AMD27_02985 PF02798 Glutathione S-transferase, N-terminal domain AMD27_02990 PF00380 Ribosomal protein S9/S16 AMD27_02995 PF00572 Ribosomal protein L13 AMD27_03000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD27_03005 PF00398 Ribosomal RNA adenine dimethylase AMD27_03010 PF00149 Calcineurin-like phosphoesterase AMD27_03025 PF04172 LrgB-like family AMD27_03035 PF13167 GTP-binding GTPase N-terminal AMD27_03035 PF01926 50S ribosome-binding GTPase AMD27_03035 PF16360 GTP-binding GTPase Middle Region AMD27_03045 PF13091 PLD-like domain AMD27_03050 PF00149 Calcineurin-like phosphoesterase AMD27_03050 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD27_03055 PF00083 Sugar (and other) transporter AMD27_03055 PF07690 Major Facilitator Superfamily AMD27_03060 PF03006 Haemolysin-III related AMD27_03070 PF13673 Acetyltransferase (GNAT) domain AMD27_03075 PF13419 Haloacid dehalogenase-like hydrolase AMD27_03090 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_03105 PF01810 LysE type translocator AMD27_03110 PF01037 Lrp/AsnC ligand binding domain AMD27_03115 PF00378 Enoyl-CoA hydratase/isomerase AMD27_03115 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD27_03115 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD27_03120 PF02803 Thiolase, C-terminal domain AMD27_03120 PF00108 Thiolase, N-terminal domain AMD27_03130 PF00313 'Cold-shock' DNA-binding domain AMD27_03135 PF02311 AraC-like ligand binding domain AMD27_03135 PF12833 Helix-turn-helix domain AMD27_03140 PF02515 CoA-transferase family III AMD27_03170 PF00290 Tryptophan synthase alpha chain AMD27_03175 PF01039 Carboxyl transferase domain AMD27_03180 PF08245 Mur ligase middle domain AMD27_03180 PF02875 Mur ligase family, glutamate ligase domain AMD27_03190 PF00753 Metallo-beta-lactamase superfamily AMD27_03195 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD27_03195 PF00578 AhpC/TSA family AMD27_03200 PF07516 SecA Wing and Scaffold domain AMD27_03200 PF01043 SecA preprotein cross-linking domain AMD27_03200 PF07517 SecA DEAD-like domain AMD27_03200 PF02810 SEC-C motif AMD27_03210 PF01960 ArgJ family AMD27_03215 PF02445 Quinolinate synthetase A protein AMD27_03240 PF00691 OmpA family AMD27_03240 PF01389 OmpA-like transmembrane domain AMD27_03245 PF17152 Periplasmic sensor domain AMD27_03245 PF00990 Diguanylate cyclase, GGDEF domain AMD27_03285 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_03285 PF13359 DDE superfamily endonuclease AMD27_03295 PF00005 ABC transporter AMD27_03300 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_03305 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_03310 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD27_03315 PF04552 Sigma-54, DNA binding domain AMD27_03315 PF04963 Sigma-54 factor, core binding domain AMD27_03315 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD27_03320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD27_03325 PF01722 BolA-like protein AMD27_03330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD27_03335 PF01634 ATP phosphoribosyltransferase AMD27_03340 PF00815 Histidinol dehydrogenase AMD27_03345 PF00155 Aminotransferase class I and II AMD27_03350 PF04715 Anthranilate synthase component I, N terminal region AMD27_03350 PF00425 chorismate binding enzyme AMD27_03390 PF00293 NUDIX domain AMD27_03395 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_03400 PF00814 Glycoprotease family AMD27_03405 PF02673 Bacitracin resistance protein BacA AMD27_03410 PF04445 Putative SAM-dependent methyltransferase AMD27_03420 PF00756 Putative esterase AMD27_03440 PF00834 Ribulose-phosphate 3 epimerase family AMD27_03445 PF00893 Small Multidrug Resistance protein AMD27_03450 PF00893 Small Multidrug Resistance protein AMD27_03455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD27_03455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD27_03460 PF08378 Nuclease-related domain AMD27_03465 PF08543 Phosphomethylpyrimidine kinase AMD27_03465 PF02581 Thiamine monophosphate synthase AMD27_03470 PF13419 Haloacid dehalogenase-like hydrolase AMD27_03475 PF01037 Lrp/AsnC ligand binding domain AMD27_03480 PF01266 FAD dependent oxidoreductase AMD27_03485 PF01168 Alanine racemase, N-terminal domain AMD27_03485 PF00842 Alanine racemase, C-terminal domain AMD27_03490 PF01042 Endoribonuclease L-PSP AMD27_03495 PF00324 Amino acid permease AMD27_03500 PF01757 Acyltransferase family AMD27_03510 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD27_03510 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD27_03520 PF00164 Ribosomal protein S12/S23 AMD27_03525 PF00177 Ribosomal protein S7p/S5e AMD27_03530 PF14492 Elongation Factor G, domain II AMD27_03530 PF03764 Elongation factor G, domain IV AMD27_03530 PF00679 Elongation factor G C-terminus AMD27_03530 PF03144 Elongation factor Tu domain 2 AMD27_03530 PF00009 Elongation factor Tu GTP binding domain AMD27_03535 PF03144 Elongation factor Tu domain 2 AMD27_03535 PF03143 Elongation factor Tu C-terminal domain AMD27_03535 PF00009 Elongation factor Tu GTP binding domain AMD27_03545 PF00583 Acetyltransferase (GNAT) family AMD27_03550 PF04377 Arginine-tRNA-protein transferase, C terminus AMD27_03550 PF04376 Arginine-tRNA-protein transferase, N terminus AMD27_03555 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD27_03560 PF13847 Methyltransferase domain AMD27_03560 PF10119 Predicted methyltransferase regulatory domain AMD27_03565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_03570 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD27_03570 PF17854 FtsK alpha domain AMD27_03570 PF09397 Ftsk gamma domain AMD27_03570 PF01580 FtsK/SpoIIIE family AMD27_03580 PF03776 Septum formation topological specificity factor MinE AMD27_03585 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD27_03590 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD27_03600 PF01553 Acyltransferase AMD27_03610 PF13361 UvrD-like helicase C-terminal domain AMD27_03610 PF00580 UvrD/REP helicase N-terminal domain AMD27_03615 PF00692 dUTPase AMD27_03620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD27_03620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD27_03620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD27_03620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD27_03625 PF00696 Amino acid kinase family AMD27_03630 PF13230 Glutamine amidotransferases class-II AMD27_03635 PF01814 Hemerythrin HHE cation binding domain AMD27_03645 PF03658 RnfH family Ubiquitin AMD27_03650 PF04355 SmpA / OmlA family AMD27_03655 PF01475 Ferric uptake regulator family AMD27_03660 PF00437 Type II/IV secretion system protein AMD27_03665 PF00437 Type II/IV secretion system protein AMD27_03670 PF01168 Alanine racemase, N-terminal domain AMD27_03685 PF12320 Type 5 capsule protein repressor C-terminal domain AMD27_03685 PF00149 Calcineurin-like phosphoesterase AMD27_03690 PF00795 Carbon-nitrogen hydrolase AMD27_03695 PF07724 AAA domain (Cdc48 subfamily) AMD27_03695 PF10431 C-terminal, D2-small domain, of ClpB protein AMD27_03700 PF02293 AmiS/UreI family transporter AMD27_03725 PF08338 Domain of unknown function (DUF1731) AMD27_03725 PF01370 NAD dependent epimerase/dehydratase family AMD27_03730 PF01266 FAD dependent oxidoreductase AMD27_03735 PF00490 Delta-aminolevulinic acid dehydratase AMD27_03740 PF03061 Thioesterase superfamily AMD27_03745 PF00529 HlyD membrane-fusion protein of T1SS AMD27_03745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD27_03750 PF07690 Major Facilitator Superfamily AMD27_03755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD27_03755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD27_03765 PF02384 N-6 DNA Methylase AMD27_03765 PF12161 HsdM N-terminal domain AMD27_03790 PF04480 Protein of unknown function (DUF559) AMD27_03795 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMD27_03795 PF12008 Type I restriction and modification enzyme - subunit R C terminal AMD27_03795 PF18766 SWI2/SNF2 ATPase AMD27_03815 PF13784 Fic/DOC family N-terminal AMD27_03815 PF02661 Fic/DOC family AMD27_03855 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_03855 PF13359 DDE superfamily endonuclease AMD27_03880 PF04183 IucA / IucC family AMD27_03880 PF06276 Ferric iron reductase FhuF-like transporter AMD27_03885 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMD27_03895 PF04183 IucA / IucC family AMD27_03895 PF06276 Ferric iron reductase FhuF-like transporter AMD27_03900 PF06276 Ferric iron reductase FhuF-like transporter AMD27_03900 PF04183 IucA / IucC family AMD27_03920 PF07715 TonB-dependent Receptor Plug Domain AMD27_03920 PF00593 TonB dependent receptor AMD27_03940 PF00355 Rieske [2Fe-2S] domain AMD27_03950 PF00355 Rieske [2Fe-2S] domain AMD27_03955 PF00106 short chain dehydrogenase AMD27_03960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD27_03965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_03965 PF14759 Reductase C-terminal AMD27_03970 PF07690 Major Facilitator Superfamily AMD27_03980 PF00561 alpha/beta hydrolase fold AMD27_03990 PF03447 Homoserine dehydrogenase, NAD binding domain AMD27_03990 PF01958 Domain of unknown function DUF108 AMD27_03995 PF00171 Aldehyde dehydrogenase family AMD27_04000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD27_04000 PF00205 Thiamine pyrophosphate enzyme, central domain AMD27_04000 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD27_04010 PF04966 Carbohydrate-selective porin, OprB family AMD27_04015 PF01011 PQQ enzyme repeat AMD27_04020 PF00593 TonB dependent receptor AMD27_04020 PF07715 TonB-dependent Receptor Plug Domain AMD27_04040 PF00378 Enoyl-CoA hydratase/isomerase AMD27_04055 PF00990 Diguanylate cyclase, GGDEF domain AMD27_04055 PF08448 PAS fold AMD27_04060 PF01327 Polypeptide deformylase AMD27_04065 PF04960 Glutaminase AMD27_04085 PF02574 Homocysteine S-methyltransferase AMD27_04085 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD27_04085 PF02310 B12 binding domain AMD27_04085 PF02607 B12 binding domain AMD27_04085 PF00809 Pterin binding enzyme AMD27_04090 PF01384 Phosphate transporter family AMD27_04105 PF01521 Iron-sulphur cluster biosynthesis AMD27_04105 PF01106 NifU-like domain AMD27_04110 PF00593 TonB dependent receptor AMD27_04110 PF07715 TonB-dependent Receptor Plug Domain AMD27_04120 PF00561 alpha/beta hydrolase fold AMD27_04125 PF00484 Carbonic anhydrase AMD27_04130 PF13472 GDSL-like Lipase/Acylhydrolase family AMD27_04135 PF00005 ABC transporter AMD27_04150 PF00912 Transglycosylase AMD27_04155 PF13089 Polyphosphate kinase N-terminal domain AMD27_04155 PF17941 Polyphosphate kinase C-terminal domain 1 AMD27_04155 PF13090 Polyphosphate kinase C-terminal domain 2 AMD27_04155 PF02503 Polyphosphate kinase middle domain AMD27_04160 PF03466 LysR substrate binding domain AMD27_04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_04165 PF00561 alpha/beta hydrolase fold AMD27_04170 PF18113 Rubredoxin binding C-terminal domain AMD27_04170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_04175 PF00301 Rubredoxin AMD27_04180 PF00156 Phosphoribosyl transferase domain AMD27_04185 PF05728 Uncharacterised protein family (UPF0227) AMD27_04190 PF00152 tRNA synthetases class II (D, K and N) AMD27_04190 PF01336 OB-fold nucleic acid binding domain AMD27_04195 PF14052 Capsule assembly protein Wzi AMD27_04200 PF01507 Phosphoadenosine phosphosulfate reductase family AMD27_04205 PF00009 Elongation factor Tu GTP binding domain AMD27_04215 PF01048 Phosphorylase superfamily AMD27_04220 PF00107 Zinc-binding dehydrogenase AMD27_04220 PF16197 Ketoacyl-synthetase C-terminal extension AMD27_04220 PF00698 Acyl transferase domain AMD27_04220 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD27_04220 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD27_04220 PF14765 Polyketide synthase dehydratase AMD27_04220 PF00550 Phosphopantetheine attachment site AMD27_04220 PF08659 KR domain AMD27_04220 PF08240 Alcohol dehydrogenase GroES-like domain AMD27_04245 PF08264 Anticodon-binding domain of tRNA AMD27_04245 PF00133 tRNA synthetases class I (I, L, M and V) AMD27_04245 PF10458 Valyl tRNA synthetase tRNA binding arm AMD27_04255 PF00106 short chain dehydrogenase AMD27_04265 PF00106 short chain dehydrogenase AMD27_04270 PF01906 Putative heavy-metal-binding AMD27_04275 PF01906 Putative heavy-metal-binding AMD27_04280 PF02321 Outer membrane efflux protein AMD27_04285 PF00873 AcrB/AcrD/AcrF family AMD27_04290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD27_04290 PF00529 HlyD membrane-fusion protein of T1SS AMD27_04305 PF00348 Polyprenyl synthetase AMD27_04310 PF00829 Ribosomal prokaryotic L21 protein AMD27_04315 PF01016 Ribosomal L27 protein AMD27_04320 PF03548 Outer membrane lipoprotein carrier protein LolA AMD27_04330 PF02403 Seryl-tRNA synthetase N-terminal domain AMD27_04330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD27_04335 PF10414 Sirohaem synthase dimerisation region AMD27_04335 PF14824 Sirohaem biosynthesis protein central AMD27_04335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD27_04340 PF00588 SpoU rRNA Methylase family AMD27_04350 PF13520 Amino acid permease AMD27_04355 PF00465 Iron-containing alcohol dehydrogenase AMD27_04365 PF03099 Biotin/lipoate A/B protein ligase family AMD27_04425 PF03979 Sigma-70 factor, region 1.1 AMD27_04425 PF00140 Sigma-70 factor, region 1.2 AMD27_04425 PF04542 Sigma-70 region 2 AMD27_04425 PF04546 Sigma-70, non-essential region AMD27_04425 PF04545 Sigma-70, region 4 AMD27_04425 PF04539 Sigma-70 region 3 AMD27_04440 PF09335 SNARE associated Golgi protein AMD27_04460 PF02261 Aspartate decarboxylase AMD27_04465 PF01195 Peptidyl-tRNA hydrolase AMD27_04470 PF14693 Ribosomal protein TL5, C-terminal domain AMD27_04470 PF01386 Ribosomal L25p family AMD27_04475 PF14572 Phosphoribosyl synthetase-associated domain AMD27_04475 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD27_04500 PF08544 GHMP kinases C terminal AMD27_04500 PF00288 GHMP kinases N terminal domain AMD27_04505 PF03550 Outer membrane lipoprotein LolB AMD27_04515 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD27_04515 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD27_04515 PF01488 Shikimate / quinate 5-dehydrogenase AMD27_04520 PF01807 CHC2 zinc finger AMD27_04520 PF08275 DNA primase catalytic core, N-terminal domain AMD27_04520 PF08278 DNA primase DnaG DnaB-binding AMD27_04520 PF10410 DnaB-helicase binding domain of primase AMD27_04525 PF13525 Outer membrane lipoprotein AMD27_04530 PF00849 RNA pseudouridylate synthase AMD27_04530 PF01479 S4 domain AMD27_04540 PF03358 NADPH-dependent FMN reductase AMD27_04555 PF01668 SmpB protein AMD27_04560 PF01467 Cytidylyltransferase-like AMD27_04565 PF00037 4Fe-4S binding domain AMD27_04600 PF00795 Carbon-nitrogen hydrolase AMD27_04600 PF02540 NAD synthase AMD27_04615 PF00106 short chain dehydrogenase AMD27_04620 PF00743 Flavin-binding monooxygenase-like AMD27_04630 PF00854 POT family AMD27_04635 PF00285 Citrate synthase, C-terminal domain AMD27_04640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD27_04645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD27_04650 PF02910 Fumarate reductase flavoprotein C-term AMD27_04650 PF00890 FAD binding domain AMD27_04655 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD27_04660 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD27_04660 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD27_04660 PF00676 Dehydrogenase E1 component AMD27_04660 PF02779 Transketolase, pyrimidine binding domain AMD27_04665 PF02817 e3 binding domain AMD27_04665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD27_04665 PF00364 Biotin-requiring enzyme AMD27_04670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_04670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD27_04675 PF00549 CoA-ligase AMD27_04675 PF08442 ATP-grasp domain AMD27_04680 PF00549 CoA-ligase AMD27_04680 PF02629 CoA binding domain AMD27_04705 PF00905 Penicillin binding protein transpeptidase domain AMD27_04705 PF03717 Penicillin-binding Protein dimerisation domain AMD27_04720 PF05191 Adenylate kinase, active site lid AMD27_04725 PF00633 Helix-hairpin-helix motif AMD27_04725 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD27_04725 PF10576 Iron-sulfur binding domain of endonuclease III AMD27_04730 PF04060 Putative Fe-S cluster AMD27_04735 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD27_04735 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD27_04745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD27_04750 PF02590 Predicted SPOUT methyltransferase AMD27_04765 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_04765 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD27_04765 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD27_04770 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD27_04775 PF00376 MerR family regulatory protein AMD27_04775 PF09278 MerR, DNA binding AMD27_04790 PF07690 Major Facilitator Superfamily AMD27_04800 PF08267 Cobalamin-independent synthase, N-terminal domain AMD27_04800 PF01717 Cobalamin-independent synthase, Catalytic domain AMD27_04805 PF01613 Flavin reductase like domain AMD27_04835 PF03695 Uncharacterised protein family (UPF0149) AMD27_04840 PF00557 Metallopeptidase family M24 AMD27_04840 PF05195 Aminopeptidase P, N-terminal domain AMD27_04845 PF00512 His Kinase A (phospho-acceptor) domain AMD27_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_04845 PF00672 HAMP domain AMD27_04850 PF00486 Transcriptional regulatory protein, C terminal AMD27_04850 PF00072 Response regulator receiver domain AMD27_04875 PF01494 FAD binding domain AMD27_04880 PF01494 FAD binding domain AMD27_04890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD27_04900 PF02021 Uncharacterised protein family UPF0102 AMD27_04905 PF04972 BON domain AMD27_04915 PF09297 NADH pyrophosphatase zinc ribbon domain AMD27_04915 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD27_04915 PF00293 NUDIX domain AMD27_04925 PF00929 Exonuclease AMD27_04930 PF01464 Transglycosylase SLT domain AMD27_04930 PF01464 Transglycosylase SLT domain AMD27_04930 PF01476 LysM domain AMD27_04930 PF01476 LysM domain AMD27_04935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD27_04940 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_04945 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_04945 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD27_04950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD27_04950 PF00005 ABC transporter AMD27_04955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD27_04955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_04960 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AMD27_04985 PF00324 Amino acid permease AMD27_04995 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMD27_05015 PF02687 FtsX-like permease family AMD27_05015 PF12704 MacB-like periplasmic core domain AMD27_05020 PF00005 ABC transporter AMD27_05025 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_05045 PF13737 Transposase DDE domain AMD27_05070 PF00753 Metallo-beta-lactamase superfamily AMD27_05070 PF03772 Competence protein AMD27_05070 PF13567 Domain of unknown function (DUF4131) AMD27_05080 PF01343 Peptidase family S49 AMD27_05080 PF06965 Na+/H+ antiporter 1 AMD27_05090 PF00551 Formyl transferase AMD27_05095 PF02769 AIR synthase related protein, C-terminal domain AMD27_05095 PF00586 AIR synthase related protein, N-terminal domain AMD27_05100 PF01594 AI-2E family transporter AMD27_05105 PF08299 Bacterial dnaA protein helix-turn-helix AMD27_05105 PF11638 DnaA N-terminal domain AMD27_05105 PF00308 Bacterial dnaA protein AMD27_05125 PF05816 Toxic anion resistance protein (TelA) AMD27_05140 PF00550 Phosphopantetheine attachment site AMD27_05140 PF14765 Polyketide synthase dehydratase AMD27_05140 PF00698 Acyl transferase domain AMD27_05140 PF08240 Alcohol dehydrogenase GroES-like domain AMD27_05140 PF00107 Zinc-binding dehydrogenase AMD27_05140 PF16197 Ketoacyl-synthetase C-terminal extension AMD27_05140 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD27_05140 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD27_05140 PF08659 KR domain AMD27_05145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_05145 PF13192 Thioredoxin domain AMD27_05150 PF02525 Flavodoxin-like fold AMD27_05155 PF03466 LysR substrate binding domain AMD27_05155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_05165 PF00037 4Fe-4S binding domain AMD27_05185 PF13411 MerR HTH family regulatory protein AMD27_05200 PF00970 Oxidoreductase FAD-binding domain AMD27_05200 PF00175 Oxidoreductase NAD-binding domain AMD27_05205 PF01980 tRNA-methyltransferase O AMD27_05205 PF18389 TrmO C-terminal domain AMD27_05210 PF00437 Type II/IV secretion system protein AMD27_05210 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD27_05220 PF00486 Transcriptional regulatory protein, C terminal AMD27_05220 PF00072 Response regulator receiver domain AMD27_05225 PF00512 His Kinase A (phospho-acceptor) domain AMD27_05225 PF08521 Two-component sensor kinase N-terminal AMD27_05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_05245 PF00905 Penicillin binding protein transpeptidase domain AMD27_05245 PF14814 Bifunctional transglycosylase second domain AMD27_05245 PF00912 Transglycosylase AMD27_05250 PF01513 ATP-NAD kinase AMD27_05255 PF07023 Protein of unknown function (DUF1315) AMD27_05260 PF00591 Glycosyl transferase family, a/b domain AMD27_05260 PF02885 Glycosyl transferase family, helical bundle domain AMD27_05265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_05265 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_05265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_05275 PF01842 ACT domain AMD27_05275 PF01817 Chorismate mutase type II AMD27_05275 PF00800 Prephenate dehydratase AMD27_05280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD27_05300 PF03883 Peroxide stress protein YaaA AMD27_05320 PF00875 DNA photolyase AMD27_05320 PF03441 FAD binding domain of DNA photolyase AMD27_05325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_05330 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_05335 PF00768 D-alanyl-D-alanine carboxypeptidase AMD27_05335 PF07943 Penicillin-binding protein 5, C-terminal domain AMD27_05345 PF00849 RNA pseudouridylate synthase AMD27_05380 PF02567 Phenazine biosynthesis-like protein AMD27_05385 PF05193 Peptidase M16 inactive domain AMD27_05385 PF00675 Insulinase (Peptidase family M16) AMD27_05405 PF00005 ABC transporter AMD27_05405 PF00664 ABC transporter transmembrane region AMD27_05410 PF07690 Major Facilitator Superfamily AMD27_05415 PF00440 Bacterial regulatory proteins, tetR family AMD27_05430 PF13737 Transposase DDE domain AMD27_05470 PF05973 Phage derived protein Gp49-like (DUF891) AMD27_05475 PF01381 Helix-turn-helix AMD27_05480 PF00857 Isochorismatase family AMD27_05485 PF12706 Beta-lactamase superfamily domain AMD27_05490 PF01965 DJ-1/PfpI family AMD27_05495 PF02581 Thiamine monophosphate synthase AMD27_05500 PF00202 Aminotransferase class-III AMD27_05510 PF00849 RNA pseudouridylate synthase AMD27_05515 PF18337 RapA N-terminal Tudor like domain AMD27_05515 PF18339 RapA N-terminal Tudor like domain 1 AMD27_05515 PF00176 SNF2 family N-terminal domain AMD27_05515 PF12137 RNA polymerase recycling family C-terminal AMD27_05515 PF00271 Helicase conserved C-terminal domain AMD27_05520 PF00392 Bacterial regulatory proteins, gntR family AMD27_05520 PF00155 Aminotransferase class I and II AMD27_05525 PF00892 EamA-like transporter family AMD27_05530 PF00378 Enoyl-CoA hydratase/isomerase AMD27_05535 PF00501 AMP-binding enzyme AMD27_05540 PF00440 Bacterial regulatory proteins, tetR family AMD27_05545 PF00175 Oxidoreductase NAD-binding domain AMD27_05545 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD27_05545 PF00970 Oxidoreductase FAD-binding domain AMD27_05550 PF00487 Fatty acid desaturase AMD27_05555 PF01925 Sulfite exporter TauE/SafE AMD27_05565 PF00202 Aminotransferase class-III AMD27_05570 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMD27_05580 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_05585 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_05590 PF00005 ABC transporter AMD27_05595 PF13737 Transposase DDE domain AMD27_05600 PF07690 Major Facilitator Superfamily AMD27_05610 PF03060 Nitronate monooxygenase AMD27_05625 PF13359 DDE superfamily endonuclease AMD27_05625 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_05635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_05635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_05635 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_05655 PF00285 Citrate synthase, C-terminal domain AMD27_05660 PF06506 Propionate catabolism activator AMD27_05660 PF00158 Sigma-54 interaction domain AMD27_05660 PF02954 Bacterial regulatory protein, Fis family AMD27_05665 PF02515 CoA-transferase family III AMD27_05670 PF00682 HMGL-like AMD27_05700 PF17874 MalT-like TPR region AMD27_05700 PF00196 Bacterial regulatory proteins, luxR family AMD27_05705 PF00378 Enoyl-CoA hydratase/isomerase AMD27_05710 PF13193 AMP-binding enzyme C-terminal domain AMD27_05710 PF00501 AMP-binding enzyme AMD27_05715 PF00378 Enoyl-CoA hydratase/isomerase AMD27_05720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD27_05720 PF00378 Enoyl-CoA hydratase/isomerase AMD27_05720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD27_05725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD27_05725 PF02769 AIR synthase related protein, C-terminal domain AMD27_05725 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD27_05735 PF01784 NIF3 (NGG1p interacting factor 3) AMD27_05740 PF00881 Nitroreductase family AMD27_05750 PF00293 NUDIX domain AMD27_05750 PF01467 Cytidylyltransferase-like AMD27_05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_05755 PF03466 LysR substrate binding domain AMD27_05765 PF00578 AhpC/TSA family AMD27_05775 PF06508 Queuosine biosynthesis protein QueC AMD27_05780 PF04055 Radical SAM superfamily AMD27_05785 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD27_05785 PF14602 Hexapeptide repeat of succinyl-transferase AMD27_05785 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_05795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_05795 PF03466 LysR substrate binding domain AMD27_05800 PF12857 TOBE-like domain AMD27_05800 PF00005 ABC transporter AMD27_05805 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_05810 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_05830 PF02618 YceG-like family AMD27_05835 PF02223 Thymidylate kinase AMD27_05845 PF02910 Fumarate reductase flavoprotein C-term AMD27_05845 PF00890 FAD binding domain AMD27_05850 PF13180 PDZ domain AMD27_05850 PF17820 PDZ domain AMD27_05875 PF10415 Fumarase C C-terminus AMD27_05875 PF00206 Lyase AMD27_05880 PF03466 LysR substrate binding domain AMD27_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_05885 PF00375 Sodium:dicarboxylate symporter family AMD27_05890 PF13737 Transposase DDE domain AMD27_05895 PF03144 Elongation factor Tu domain 2 AMD27_05895 PF06421 GTP-binding protein LepA C-terminus AMD27_05895 PF00009 Elongation factor Tu GTP binding domain AMD27_05895 PF00679 Elongation factor G C-terminus AMD27_05900 PF10502 Signal peptidase, peptidase S26 AMD27_05910 PF00035 Double-stranded RNA binding motif AMD27_05910 PF14622 Ribonuclease-III-like AMD27_05915 PF07650 KH domain AMD27_05915 PF01926 50S ribosome-binding GTPase AMD27_05925 PF02565 Recombination protein O C terminal AMD27_05925 PF11967 Recombination protein O N terminal AMD27_05930 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD27_05935 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMD27_05960 PF01638 HxlR-like helix-turn-helix AMD27_05980 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_05985 PF01207 Dihydrouridine synthase (Dus) AMD27_05990 PF03060 Nitronate monooxygenase AMD27_06005 PF00375 Sodium:dicarboxylate symporter family AMD27_06010 PF04143 Sulphur transport AMD27_06025 PF13192 Thioredoxin domain AMD27_06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_06050 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD27_06050 PF00578 AhpC/TSA family AMD27_06055 PF11898 Domain of unknown function (DUF3418) AMD27_06055 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD27_06055 PF00271 Helicase conserved C-terminal domain AMD27_06055 PF04408 Helicase associated domain (HA2) AMD27_06055 PF00270 DEAD/DEAH box helicase AMD27_06060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD27_06060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD27_06070 PF02678 Pirin AMD27_06070 PF05726 Pirin C-terminal cupin domain AMD27_06085 PF09190 DALR domain AMD27_06085 PF01406 tRNA synthetases class I (C) catalytic domain AMD27_06095 PF00571 CBS domain AMD27_06095 PF01380 SIS domain AMD27_06110 PF03968 OstA-like protein AMD27_06115 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD27_06115 PF00005 ABC transporter AMD27_06125 PF00664 ABC transporter transmembrane region AMD27_06125 PF00005 ABC transporter AMD27_06145 PF01205 Uncharacterized protein family UPF0029 AMD27_06160 PF01596 O-methyltransferase AMD27_06170 PF11953 Domain of unknown function (DUF3470) AMD27_06170 PF00037 4Fe-4S binding domain AMD27_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_06190 PF03466 LysR substrate binding domain AMD27_06200 PF01810 LysE type translocator AMD27_06210 PF04820 Tryptophan halogenase AMD27_06215 PF01810 LysE type translocator AMD27_06230 PF01624 MutS domain I AMD27_06230 PF05188 MutS domain II AMD27_06230 PF05192 MutS domain III AMD27_06230 PF05190 MutS family domain IV AMD27_06230 PF00488 MutS domain V AMD27_06295 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD27_06330 PF00580 UvrD/REP helicase N-terminal domain AMD27_06330 PF13361 UvrD-like helicase C-terminal domain AMD27_06330 PF12462 DNA helicase IV / RNA helicase N terminal AMD27_06340 PF02601 Exonuclease VII, large subunit AMD27_06340 PF13742 OB-fold nucleic acid binding domain AMD27_06355 PF16671 Actin cross-linking domain AMD27_06355 PF04717 Type VI secretion system, phage-baseplate injector AMD27_06380 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_06380 PF13359 DDE superfamily endonuclease AMD27_06385 PF02673 Bacitracin resistance protein BacA AMD27_06390 PF03814 Potassium-transporting ATPase A subunit AMD27_06400 PF02669 K+-transporting ATPase, c chain AMD27_06405 PF00512 His Kinase A (phospho-acceptor) domain AMD27_06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_06405 PF13492 GAF domain AMD27_06405 PF13493 Domain of unknown function (DUF4118) AMD27_06405 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD27_06410 PF00072 Response regulator receiver domain AMD27_06410 PF00486 Transcriptional regulatory protein, C terminal AMD27_06435 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_06440 PF00588 SpoU rRNA Methylase family AMD27_06445 PF02811 PHP domain AMD27_06445 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD27_06445 PF14579 Helix-hairpin-helix motif AMD27_06445 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD27_06445 PF01336 OB-fold nucleic acid binding domain AMD27_06455 PF17763 Glutaminase/Asparaginase C-terminal domain AMD27_06455 PF00710 Asparaginase, N-terminal AMD27_06460 PF00155 Aminotransferase class I and II AMD27_06465 PF01641 SelR domain AMD27_06470 PF00255 Glutathione peroxidase AMD27_06475 PF03956 Lysine exporter LysO AMD27_06480 PF00743 Flavin-binding monooxygenase-like AMD27_06490 PF03969 AFG1-like ATPase AMD27_06495 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_06500 PF00990 Diguanylate cyclase, GGDEF domain AMD27_06515 PF00271 Helicase conserved C-terminal domain AMD27_06515 PF02151 UvrB/uvrC motif AMD27_06515 PF04851 Type III restriction enzyme, res subunit AMD27_06515 PF17757 UvrB interaction domain AMD27_06515 PF12344 Ultra-violet resistance protein B AMD27_06520 PF08212 Lipocalin-like domain AMD27_06530 PF13737 Transposase DDE domain AMD27_06535 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD27_06535 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD27_06555 PF05368 NmrA-like family AMD27_06560 PF01638 HxlR-like helix-turn-helix AMD27_06565 PF02567 Phenazine biosynthesis-like protein AMD27_06570 PF01018 GTP1/OBG AMD27_06570 PF01926 50S ribosome-binding GTPase AMD27_06575 PF00696 Amino acid kinase family AMD27_06575 PF01472 PUA domain AMD27_06585 PF07759 Protein of unknown function (DUF1615) AMD27_06600 PF03796 DnaB-like helicase C terminal domain AMD27_06600 PF00772 DnaB-like helicase N terminal domain AMD27_06605 PF01281 Ribosomal protein L9, N-terminal domain AMD27_06605 PF03948 Ribosomal protein L9, C-terminal domain AMD27_06610 PF01084 Ribosomal protein S18 AMD27_06615 PF01250 Ribosomal protein S6 AMD27_06620 PF01040 UbiA prenyltransferase family AMD27_06625 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD27_06630 PF00510 Cytochrome c oxidase subunit III AMD27_06635 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD27_06640 PF06481 COX Aromatic Rich Motif AMD27_06640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD27_06650 PF02896 PEP-utilising enzyme, TIM barrel domain AMD27_06650 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD27_06650 PF00391 PEP-utilising enzyme, mobile domain AMD27_06655 PF03618 Kinase/pyrophosphorylase AMD27_06685 PF13932 GidA associated domain AMD27_06685 PF01134 Glucose inhibited division protein A AMD27_06695 PF14403 Circularly permuted ATP-grasp type 2 AMD27_06705 PF01841 Transglutaminase-like superfamily AMD27_06705 PF08379 Bacterial transglutaminase-like N-terminal region AMD27_06720 PF00842 Alanine racemase, C-terminal domain AMD27_06720 PF01168 Alanine racemase, N-terminal domain AMD27_06725 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_06730 PF01274 Malate synthase AMD27_06735 PF00171 Aldehyde dehydrogenase family AMD27_06900 PF06381 Protein of unknown function (DUF1073) AMD27_06905 PF04233 Phage Mu protein F like protein AMD27_07020 PF00959 Phage lysozyme AMD27_07065 PF13356 Arm DNA-binding domain AMD27_07065 PF00589 Phage integrase family AMD27_07080 PF03471 Transporter associated domain AMD27_07080 PF03741 Integral membrane protein TerC family AMD27_07100 PF05525 Branched-chain amino acid transport protein AMD27_07105 PF00557 Metallopeptidase family M24 AMD27_07110 PF03594 Benzoate membrane transport protein AMD27_07120 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD27_07120 PF13202 EF hand AMD27_07125 PF03466 LysR substrate binding domain AMD27_07125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_07140 PF02803 Thiolase, C-terminal domain AMD27_07140 PF00108 Thiolase, N-terminal domain AMD27_07175 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD27_07175 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD27_07175 PF12169 DNA polymerase III subunits gamma and tau domain III AMD27_07180 PF03061 Thioesterase superfamily AMD27_07185 PF00465 Iron-containing alcohol dehydrogenase AMD27_07190 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD27_07195 PF01565 FAD binding domain AMD27_07195 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD27_07210 PF01645 Conserved region in glutamate synthase AMD27_07215 PF08007 Cupin superfamily protein AMD27_07225 PF02545 Maf-like protein AMD27_07235 PF00162 Phosphoglycerate kinase AMD27_07245 PF01116 Fructose-bisphosphate aldolase class-II AMD27_07265 PF02542 YgbB family AMD27_07275 PF00793 DAHP synthetase I family AMD27_07280 PF01925 Sulfite exporter TauE/SafE AMD27_07285 PF02684 Lipid-A-disaccharide synthetase AMD27_07305 PF00149 Calcineurin-like phosphoesterase AMD27_07305 PF02872 5'-nucleotidase, C-terminal domain AMD27_07335 PF07690 Major Facilitator Superfamily AMD27_07340 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD27_07340 PF01464 Transglycosylase SLT domain AMD27_07360 PF00782 Dual specificity phosphatase, catalytic domain AMD27_07365 PF12146 Serine aminopeptidase, S33 AMD27_07365 PF12147 Putative methyltransferase AMD27_07370 PF01066 CDP-alcohol phosphatidyltransferase AMD27_07385 PF04073 Aminoacyl-tRNA editing domain AMD27_07390 PF13090 Polyphosphate kinase C-terminal domain 2 AMD27_07390 PF13089 Polyphosphate kinase N-terminal domain AMD27_07390 PF17941 Polyphosphate kinase C-terminal domain 1 AMD27_07390 PF02503 Polyphosphate kinase middle domain AMD27_07400 PF01230 HIT domain AMD27_07410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD27_07410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD27_07420 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD27_07425 PF02575 YbaB/EbfC DNA-binding family AMD27_07430 PF02132 RecR protein AMD27_07430 PF13662 Toprim domain AMD27_07435 PF01612 3'-5' exonuclease AMD27_07435 PF00570 HRDC domain AMD27_07440 PF05166 YcgL domain AMD27_07450 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_07450 PF01434 Peptidase family M41 AMD27_07450 PF17862 AAA+ lid domain AMD27_07465 PF00571 CBS domain AMD27_07495 PF00675 Insulinase (Peptidase family M16) AMD27_07495 PF05193 Peptidase M16 inactive domain AMD27_07500 PF02881 SRP54-type protein, helical bundle domain AMD27_07500 PF00448 SRP54-type protein, GTPase domain AMD27_07525 PF08173 Membrane bound YbgT-like protein AMD27_07530 PF02322 Cytochrome bd terminal oxidase subunit II AMD27_07535 PF01654 Cytochrome bd terminal oxidase subunit I AMD27_07545 PF07290 Protein of unknown function (DUF1449) AMD27_07555 PF00294 pfkB family carbohydrate kinase AMD27_07560 PF05193 Peptidase M16 inactive domain AMD27_07560 PF00675 Insulinase (Peptidase family M16) AMD27_07560 PF08367 Peptidase M16C associated AMD27_07565 PF02253 Phospholipase A1 AMD27_07580 PF11412 Disulphide bond corrector protein DsbC AMD27_07580 PF02683 Cytochrome C biogenesis protein transmembrane region AMD27_07595 PF02667 Short chain fatty acid transporter AMD27_07600 PF01144 Coenzyme A transferase AMD27_07605 PF01144 Coenzyme A transferase AMD27_07610 PF00682 HMGL-like AMD27_07615 PF00364 Biotin-requiring enzyme AMD27_07615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD27_07615 PF02785 Biotin carboxylase C-terminal domain AMD27_07615 PF00289 Biotin carboxylase, N-terminal domain AMD27_07620 PF00378 Enoyl-CoA hydratase/isomerase AMD27_07625 PF01039 Carboxyl transferase domain AMD27_07630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_07630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_07630 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_07635 PF00440 Bacterial regulatory proteins, tetR family AMD27_07640 PF00501 AMP-binding enzyme AMD27_07640 PF13193 AMP-binding enzyme C-terminal domain AMD27_07650 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_07655 PF00501 AMP-binding enzyme AMD27_07655 PF13193 AMP-binding enzyme C-terminal domain AMD27_07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_07665 PF00512 His Kinase A (phospho-acceptor) domain AMD27_07665 PF08521 Two-component sensor kinase N-terminal AMD27_07670 PF00072 Response regulator receiver domain AMD27_07670 PF00486 Transcriptional regulatory protein, C terminal AMD27_07675 PF00884 Sulfatase AMD27_07675 PF08019 Phosphoethanolamine transferase EptA/EptB AMD27_07705 PF06628 Catalase-related immune-responsive AMD27_07705 PF00199 Catalase AMD27_07705 PF18011 C-terminal domain found in long catalases AMD27_07720 PF05401 Nodulation protein S (NodS) AMD27_07730 PF07690 Major Facilitator Superfamily AMD27_07735 PF00982 Glycosyltransferase family 20 AMD27_07740 PF02358 Trehalose-phosphatase AMD27_07745 PF00005 ABC transporter AMD27_07755 PF07690 Major Facilitator Superfamily AMD27_07760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD27_07760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_07760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD27_07760 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMD27_07760 PF04324 BFD-like [2Fe-2S] binding domain AMD27_07765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD27_07765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD27_07765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_07765 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMD27_07765 PF04324 BFD-like [2Fe-2S] binding domain AMD27_07770 PF01568 Molydopterin dinucleotide binding domain AMD27_07770 PF04324 BFD-like [2Fe-2S] binding domain AMD27_07770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMD27_07770 PF00384 Molybdopterin oxidoreductase AMD27_07775 PF12804 MobA-like NTP transferase domain AMD27_07780 PF04055 Radical SAM superfamily AMD27_07780 PF06463 Molybdenum Cofactor Synthesis C AMD27_07790 PF02391 MoaE protein AMD27_07795 PF00994 Probable molybdopterin binding domain AMD27_07795 PF01967 MoaC family AMD27_07800 PF03453 MoeA N-terminal region (domain I and II) AMD27_07800 PF03454 MoeA C-terminal region (domain IV) AMD27_07800 PF00994 Probable molybdopterin binding domain AMD27_07810 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_07815 PF00005 ABC transporter AMD27_07815 PF03459 TOBE domain AMD27_07820 PF12146 Serine aminopeptidase, S33 AMD27_07825 PF02803 Thiolase, C-terminal domain AMD27_07825 PF00108 Thiolase, N-terminal domain AMD27_07830 PF01144 Coenzyme A transferase AMD27_07835 PF01144 Coenzyme A transferase AMD27_07840 PF03594 Benzoate membrane transport protein AMD27_07845 PF00106 short chain dehydrogenase AMD27_07850 PF00970 Oxidoreductase FAD-binding domain AMD27_07850 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD27_07850 PF00175 Oxidoreductase NAD-binding domain AMD27_07855 PF00866 Ring hydroxylating beta subunit AMD27_07860 PF00355 Rieske [2Fe-2S] domain AMD27_07860 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMD27_07865 PF00775 Dioxygenase AMD27_07865 PF04444 Catechol dioxygenase N terminus AMD27_07870 PF02426 Muconolactone delta-isomerase AMD27_07875 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD27_07875 PF13378 Enolase C-terminal domain-like AMD27_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_07880 PF03466 LysR substrate binding domain AMD27_07900 PF00324 Amino acid permease AMD27_07905 PF18381 YcaO cyclodehydratase C-terminal domain AMD27_07905 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMD27_07920 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD27_07930 PF03466 LysR substrate binding domain AMD27_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_07945 PF03358 NADPH-dependent FMN reductase AMD27_07950 PF01758 Sodium Bile acid symporter family AMD27_07960 PF01022 Bacterial regulatory protein, arsR family AMD27_07965 PF03960 ArsC family AMD27_07995 PF13737 Transposase DDE domain AMD27_08010 PF01740 STAS domain AMD27_08010 PF00916 Sulfate permease family AMD27_08015 PF00375 Sodium:dicarboxylate symporter family AMD27_08020 PF06912 Protein of unknown function (DUF1275) AMD27_08025 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMD27_08030 PF00924 Mechanosensitive ion channel AMD27_08035 PF00005 ABC transporter AMD27_08035 PF00664 ABC transporter transmembrane region AMD27_08045 PF02311 AraC-like ligand binding domain AMD27_08045 PF12833 Helix-turn-helix domain AMD27_08050 PF01597 Glycine cleavage H-protein AMD27_08055 PF13737 Transposase DDE domain AMD27_08090 PF00793 DAHP synthetase I family AMD27_08095 PF00990 Diguanylate cyclase, GGDEF domain AMD27_08095 PF00563 EAL domain AMD27_08095 PF03707 Bacterial signalling protein N terminal repeat AMD27_08100 PF12697 Alpha/beta hydrolase family AMD27_08105 PF00155 Aminotransferase class I and II AMD27_08110 PF08240 Alcohol dehydrogenase GroES-like domain AMD27_08110 PF00107 Zinc-binding dehydrogenase AMD27_08115 PF13091 PLD-like domain AMD27_08140 PF00106 short chain dehydrogenase AMD27_08160 PF03466 LysR substrate binding domain AMD27_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_08165 PF00565 Staphylococcal nuclease homologue AMD27_08175 PF07690 Major Facilitator Superfamily AMD27_08195 PF00206 Lyase AMD27_08195 PF10415 Fumarase C C-terminus AMD27_08200 PF16363 GDP-mannose 4,6 dehydratase AMD27_08205 PF00199 Catalase AMD27_08220 PF02342 TerD domain AMD27_08410 PF13742 OB-fold nucleic acid binding domain AMD27_08410 PF02601 Exonuclease VII, large subunit AMD27_08420 PF00293 NUDIX domain AMD27_08485 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AMD27_08490 PF01726 LexA DNA binding domain AMD27_08490 PF00717 Peptidase S24-like AMD27_08545 PF00589 Phage integrase family AMD27_08550 PF02635 DsrE/DsrF-like family AMD27_08580 PF00717 Peptidase S24-like AMD27_08585 PF13438 Domain of unknown function (DUF4113) AMD27_08585 PF11799 impB/mucB/samB family C-terminal domain AMD27_08585 PF00817 impB/mucB/samB family AMD27_08590 PF01220 Dehydroquinase class II AMD27_08595 PF00364 Biotin-requiring enzyme AMD27_08600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD27_08600 PF00289 Biotin carboxylase, N-terminal domain AMD27_08600 PF02785 Biotin carboxylase C-terminal domain AMD27_08610 PF07694 5TMR of 5TMR-LYT AMD27_08610 PF00990 Diguanylate cyclase, GGDEF domain AMD27_08615 PF12832 MFS_1 like family AMD27_08635 PF13359 DDE superfamily endonuclease AMD27_08635 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_08640 PF13359 DDE superfamily endonuclease AMD27_08640 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_08650 PF00582 Universal stress protein family AMD27_08670 PF01264 Chorismate synthase AMD27_08675 PF05175 Methyltransferase small domain AMD27_08680 PF00313 'Cold-shock' DNA-binding domain AMD27_08690 PF03109 ABC1 family AMD27_08695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_08695 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_08695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_08700 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_08700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_08700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_08705 PF00583 Acetyltransferase (GNAT) family AMD27_08710 PF00487 Fatty acid desaturase AMD27_08715 PF12852 Cupin AMD27_08715 PF12833 Helix-turn-helix domain AMD27_08725 PF00216 Bacterial DNA-binding protein AMD27_08740 PF02082 Transcriptional regulator AMD27_08745 PF00266 Aminotransferase class-V AMD27_08750 PF01592 NifU-like N terminal domain AMD27_08755 PF01521 Iron-sulphur cluster biosynthesis AMD27_08760 PF07743 HSCB C-terminal oligomerisation domain AMD27_08760 PF00226 DnaJ domain AMD27_08765 PF00012 Hsp70 protein AMD27_08770 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD27_08775 PF00211 Adenylate and Guanylate cyclase catalytic domain AMD27_08785 PF02559 CarD-like/TRCF domain AMD27_08785 PF00271 Helicase conserved C-terminal domain AMD27_08785 PF03461 TRCF domain AMD27_08785 PF00270 DEAD/DEAH box helicase AMD27_08785 PF17757 UvrB interaction domain AMD27_08800 PF03737 Aldolase/RraA AMD27_08805 PF13460 NAD(P)H-binding AMD27_08810 PF01649 Ribosomal protein S20 AMD27_08820 PF00459 Inositol monophosphatase family AMD27_08825 PF13419 Haloacid dehalogenase-like hydrolase AMD27_08830 PF01479 S4 domain AMD27_08835 PF00154 recA bacterial DNA recombination protein AMD27_08840 PF02631 RecX family AMD27_08855 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD27_08855 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_08860 PF07977 FabA-like domain AMD27_08865 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD27_08865 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_08875 PF01103 Surface antigen AMD27_08875 PF07244 Surface antigen variable number repeat AMD27_08880 PF13180 PDZ domain AMD27_08880 PF02163 Peptidase family M50 AMD27_08880 PF17820 PDZ domain AMD27_08885 PF13288 DXP reductoisomerase C-terminal domain AMD27_08885 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD27_08885 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD27_08895 PF01255 Putative undecaprenyl diphosphate synthase AMD27_08900 PF01765 Ribosome recycling factor AMD27_08905 PF00696 Amino acid kinase family AMD27_08910 PF04055 Radical SAM superfamily AMD27_08910 PF00919 Uncharacterized protein family UPF0004 AMD27_08910 PF18693 TRAM domain AMD27_08915 PF00989 PAS fold AMD27_08915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_08915 PF00512 His Kinase A (phospho-acceptor) domain AMD27_08920 PF00158 Sigma-54 interaction domain AMD27_08920 PF00072 Response regulator receiver domain AMD27_08920 PF02954 Bacterial regulatory protein, Fis family AMD27_08930 PF00285 Citrate synthase, C-terminal domain AMD27_08940 PF00440 Bacterial regulatory proteins, tetR family AMD27_08945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD27_08945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD27_08950 PF00083 Sugar (and other) transporter AMD27_08955 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD27_08960 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_08960 PF02861 Clp amino terminal domain, pathogenicity island component AMD27_08960 PF10431 C-terminal, D2-small domain, of ClpB protein AMD27_08960 PF07724 AAA domain (Cdc48 subfamily) AMD27_08960 PF17871 AAA lid domain AMD27_08965 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD27_08975 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD27_08975 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD27_08995 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD27_09000 PF00585 C-terminal regulatory domain of Threonine dehydratase AMD27_09000 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_09015 PF13737 Transposase DDE domain AMD27_09025 PF02080 TrkA-C domain AMD27_09025 PF02254 TrkA-N domain AMD27_09030 PF02386 Cation transport protein AMD27_09040 PF04607 Region found in RelA / SpoT proteins AMD27_09040 PF13291 ACT domain AMD27_09040 PF02824 TGS domain AMD27_09045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_09045 PF03466 LysR substrate binding domain AMD27_09050 PF05958 tRNA (Uracil-5-)-methyltransferase AMD27_09070 PF00248 Aldo/keto reductase family AMD27_09075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_09075 PF03466 LysR substrate binding domain AMD27_09080 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD27_09080 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD27_09085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD27_09090 PF00149 Calcineurin-like phosphoesterase AMD27_09100 PF00881 Nitroreductase family AMD27_09105 PF01266 FAD dependent oxidoreductase AMD27_09110 PF01098 Cell cycle protein AMD27_09115 PF01266 FAD dependent oxidoreductase AMD27_09130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD27_09135 PF04977 Septum formation initiator AMD27_09140 PF00113 Enolase, C-terminal TIM barrel domain AMD27_09140 PF03952 Enolase, N-terminal domain AMD27_09145 PF00793 DAHP synthetase I family AMD27_09150 PF00117 Glutamine amidotransferase class-I AMD27_09150 PF06418 CTP synthase N-terminus AMD27_09165 PF00149 Calcineurin-like phosphoesterase AMD27_09165 PF02872 5'-nucleotidase, C-terminal domain AMD27_09180 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_09180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD27_09190 PF00561 alpha/beta hydrolase fold AMD27_09200 PF02146 Sir2 family AMD27_09210 PF10415 Fumarase C C-terminus AMD27_09210 PF00206 Lyase AMD27_09215 PF00474 Sodium:solute symporter family AMD27_09220 PF01037 Lrp/AsnC ligand binding domain AMD27_09225 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD27_09225 PF14850 DNA-binding domain of Proline dehydrogenase AMD27_09225 PF00171 Aldehyde dehydrogenase family AMD27_09225 PF01619 Proline dehydrogenase AMD27_09230 PF01433 Peptidase family M1 domain AMD27_09230 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMD27_09230 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMD27_09240 PF02110 Hydroxyethylthiazole kinase family AMD27_09250 PF14493 Helix-turn-helix domain AMD27_09250 PF05970 PIF1-like helicase AMD27_09265 PF00106 short chain dehydrogenase AMD27_09280 PF00171 Aldehyde dehydrogenase family AMD27_09290 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD27_09295 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD27_09300 PF08240 Alcohol dehydrogenase GroES-like domain AMD27_09300 PF00107 Zinc-binding dehydrogenase AMD27_09305 PF01323 DSBA-like thioredoxin domain AMD27_09315 PF00958 GMP synthase C terminal domain AMD27_09315 PF00117 Glutamine amidotransferase class-I AMD27_09315 PF02540 NAD synthase AMD27_09320 PF01810 LysE type translocator AMD27_09345 PF02779 Transketolase, pyrimidine binding domain AMD27_09345 PF02780 Transketolase, C-terminal domain AMD27_09345 PF00456 Transketolase, thiamine diphosphate binding domain AMD27_09350 PF00072 Response regulator receiver domain AMD27_09350 PF00990 Diguanylate cyclase, GGDEF domain AMD27_09360 PF02772 S-adenosylmethionine synthetase, central domain AMD27_09360 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD27_09360 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD27_09375 PF01810 LysE type translocator AMD27_09385 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD27_09400 PF01256 Carbohydrate kinase AMD27_09400 PF03853 YjeF-related protein N-terminus AMD27_09405 PF08331 Domain of unknown function (DUF1730) AMD27_09410 PF04055 Radical SAM superfamily AMD27_09410 PF06968 Biotin and Thiamin Synthesis associated domain AMD27_09430 PF00378 Enoyl-CoA hydratase/isomerase AMD27_09435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_09435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_09435 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_09440 PF13193 AMP-binding enzyme C-terminal domain AMD27_09440 PF00501 AMP-binding enzyme AMD27_09445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD27_09445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD27_09450 PF00171 Aldehyde dehydrogenase family AMD27_09455 PF03466 LysR substrate binding domain AMD27_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_09460 PF01553 Acyltransferase AMD27_09475 PF01709 Transcriptional regulator AMD27_09495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_09495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD27_09505 PF00296 Luciferase-like monooxygenase AMD27_09510 PF03180 NLPA lipoprotein AMD27_09515 PF09383 NIL domain AMD27_09515 PF00005 ABC transporter AMD27_09520 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_09525 PF06071 Protein of unknown function (DUF933) AMD27_09525 PF01926 50S ribosome-binding GTPase AMD27_09535 PF03591 AzlC protein AMD27_09540 PF05437 Branched-chain amino acid transport protein (AzlD) AMD27_09545 PF02222 ATP-grasp domain AMD27_09550 PF01966 HD domain AMD27_09550 PF08335 GlnD PII-uridylyltransferase AMD27_09550 PF01909 Nucleotidyltransferase domain AMD27_09555 PF00155 Aminotransferase class I and II AMD27_09560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD27_09570 PF00216 Bacterial DNA-binding protein AMD27_09575 PF00575 S1 RNA binding domain AMD27_09580 PF02224 Cytidylate kinase AMD27_09590 PF14437 MafB19-like deaminase AMD27_09600 PF03167 Uracil DNA glycosylase superfamily AMD27_09610 PF03934 Type II secretion system (T2SS), protein K AMD27_09615 PF07963 Prokaryotic N-terminal methylation motif AMD27_09615 PF11612 Type II secretion system (T2SS), protein J AMD27_09620 PF07963 Prokaryotic N-terminal methylation motif AMD27_09620 PF02501 Type II secretion system (T2SS), protein I AMD27_09625 PF08334 Type II secretion system (T2SS), protein G AMD27_09625 PF07963 Prokaryotic N-terminal methylation motif AMD27_09635 PF01026 TatD related DNase AMD27_09645 PF09115 DNA polymerase III, delta subunit, C terminal AMD27_09650 PF02348 Cytidylyltransferase AMD27_09655 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD27_09660 PF00664 ABC transporter transmembrane region AMD27_09660 PF00005 ABC transporter AMD27_09670 PF01618 MotA/TolQ/ExbB proton channel family AMD27_09675 PF17762 HTH domain found in ParB protein AMD27_09675 PF02195 ParB-like nuclease domain AMD27_09680 PF13614 AAA domain AMD27_09685 PF02527 rRNA small subunit methyltransferase G AMD27_09690 PF00483 Nucleotidyl transferase AMD27_09695 PF01636 Phosphotransferase enzyme family AMD27_09700 PF03968 OstA-like protein AMD27_09700 PF04453 LPS transport system D AMD27_09705 PF00639 PPIC-type PPIASE domain AMD27_09705 PF09312 SurA N-terminal domain AMD27_09710 PF17209 Hfq protein AMD27_09720 PF01119 DNA mismatch repair protein, C-terminal domain AMD27_09720 PF08676 MutL C terminal dimerisation domain AMD27_09725 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD27_09735 PF01479 S4 domain AMD27_09735 PF00849 RNA pseudouridylate synthase AMD27_09750 PF00849 RNA pseudouridylate synthase AMD27_09750 PF01479 S4 domain AMD27_09755 PF04284 Protein of unknown function (DUF441) AMD27_09760 PF03616 Sodium/glutamate symporter AMD27_09765 PF03616 Sodium/glutamate symporter AMD27_09780 PF00330 Aconitase family (aconitate hydratase) AMD27_09780 PF06434 Aconitate hydratase 2 N-terminus AMD27_09780 PF11791 Aconitate B N-terminal domain AMD27_09800 PF04357 TamB, inner membrane protein subunit of TAM complex AMD27_09805 PF01103 Surface antigen AMD27_09805 PF07244 Surface antigen variable number repeat AMD27_09805 PF17243 POTRA domain TamA domain 1 AMD27_09810 PF07690 Major Facilitator Superfamily AMD27_09815 PF03232 Ubiquinone biosynthesis protein COQ7 AMD27_09820 PF03466 LysR substrate binding domain AMD27_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_09830 PF02152 Dihydroneopterin aldolase AMD27_09835 PF03109 ABC1 family AMD27_09840 PF00899 ThiF family AMD27_09845 PF00106 short chain dehydrogenase AMD27_09855 PF17827 PrmC N-terminal domain AMD27_09855 PF13847 Methyltransferase domain AMD27_09860 PF00472 RF-1 domain AMD27_09860 PF03462 PCRF domain AMD27_09875 PF00296 Luciferase-like monooxygenase AMD27_09895 PF02954 Bacterial regulatory protein, Fis family AMD27_09900 PF02142 MGS-like domain AMD27_09900 PF01808 AICARFT/IMPCHase bienzyme AMD27_09905 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD27_09905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD27_09905 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD27_09915 PF03180 NLPA lipoprotein AMD27_09920 PF00005 ABC transporter AMD27_09920 PF09383 NIL domain AMD27_09925 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_09940 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_09940 PF13359 DDE superfamily endonuclease AMD27_09950 PF00753 Metallo-beta-lactamase superfamily AMD27_09950 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD27_10015 PF00814 Glycoprotease family AMD27_10020 PF01165 Ribosomal protein S21 AMD27_10025 PF09424 Yqey-like protein AMD27_10040 PF01435 Peptidase family M48 AMD27_10045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD27_10045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD27_10055 PF01435 Peptidase family M48 AMD27_10060 PF00156 Phosphoribosyl transferase domain AMD27_10070 PF01180 Dihydroorotate dehydrogenase AMD27_10090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD27_10090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD27_10095 PF00881 Nitroreductase family AMD27_10105 PF00270 DEAD/DEAH box helicase AMD27_10105 PF00271 Helicase conserved C-terminal domain AMD27_10110 PF00313 'Cold-shock' DNA-binding domain AMD27_10120 PF04545 Sigma-70, region 4 AMD27_10120 PF04542 Sigma-70 region 2 AMD27_10120 PF00140 Sigma-70 factor, region 1.2 AMD27_10125 PF04241 Protein of unknown function (DUF423) AMD27_10135 PF05690 Thiazole biosynthesis protein ThiG AMD27_10140 PF03992 Antibiotic biosynthesis monooxygenase AMD27_10145 PF02525 Flavodoxin-like fold AMD27_10150 PF00043 Glutathione S-transferase, C-terminal domain AMD27_10150 PF02798 Glutathione S-transferase, N-terminal domain AMD27_10160 PF01740 STAS domain AMD27_10160 PF00916 Sulfate permease family AMD27_10170 PF02390 Putative methyltransferase AMD27_10190 PF04972 BON domain AMD27_10190 PF00691 OmpA family AMD27_10195 PF01979 Amidohydrolase family AMD27_10200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD27_10200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD27_10210 PF01170 Putative RNA methylase family UPF0020 AMD27_10210 PF10672 S-adenosylmethionine-dependent methyltransferase AMD27_10210 PF02926 THUMP domain AMD27_10220 PF17871 AAA lid domain AMD27_10220 PF10431 C-terminal, D2-small domain, of ClpB protein AMD27_10220 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_10220 PF07724 AAA domain (Cdc48 subfamily) AMD27_10220 PF02861 Clp amino terminal domain, pathogenicity island component AMD27_10225 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_10240 PF00266 Aminotransferase class-V AMD27_10245 PF02566 OsmC-like protein AMD27_10250 PF00027 Cyclic nucleotide-binding domain AMD27_10250 PF13545 Crp-like helix-turn-helix domain AMD27_10255 PF00248 Aldo/keto reductase family AMD27_10275 PF00709 Adenylosuccinate synthetase AMD27_10280 PF13393 Histidyl-tRNA synthetase AMD27_10290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD27_10290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD27_10295 PF02272 DHHA1 domain AMD27_10295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD27_10295 PF01411 tRNA synthetases class II (A) AMD27_10305 PF00696 Amino acid kinase family AMD27_10305 PF01842 ACT domain AMD27_10305 PF13840 ACT domain AMD27_10310 PF02599 Global regulator protein family AMD27_10315 PF01351 Ribonuclease HII AMD27_10325 PF01292 Prokaryotic cytochrome b561 AMD27_10335 PF00962 Adenosine/AMP deaminase AMD27_10340 PF00860 Permease family AMD27_10355 PF01613 Flavin reductase like domain AMD27_10360 PF01042 Endoribonuclease L-PSP AMD27_10365 PF00857 Isochorismatase family AMD27_10375 PF12697 Alpha/beta hydrolase family AMD27_10380 PF03466 LysR substrate binding domain AMD27_10380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_10385 PF03971 Monomeric isocitrate dehydrogenase AMD27_10405 PF17863 AAA lid domain AMD27_10405 PF07726 ATPase family associated with various cellular activities (AAA) AMD27_10410 PF02558 Ketopantoate reductase PanE/ApbA AMD27_10410 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD27_10415 PF04328 Selenoprotein, putative AMD27_10420 PF13722 5TM C-terminal transporter carbon starvation CstA AMD27_10420 PF02554 Carbon starvation protein CstA AMD27_10425 PF09285 Elongation factor P, C-terminal AMD27_10425 PF08207 Elongation factor P (EF-P) KOW-like domain AMD27_10425 PF01132 Elongation factor P (EF-P) OB domain AMD27_10430 PF04055 Radical SAM superfamily AMD27_10445 PF01197 Ribosomal protein L31 AMD27_10450 PF13593 SBF-like CPA transporter family (DUF4137) AMD27_10455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD27_10460 PF07690 Major Facilitator Superfamily AMD27_10465 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD27_10465 PF13654 AAA domain AMD27_10470 PF00462 Glutaredoxin AMD27_10475 PF00202 Aminotransferase class-III AMD27_10480 PF03466 LysR substrate binding domain AMD27_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_10485 PF01551 Peptidase family M23 AMD27_10485 PF01476 LysM domain AMD27_10490 PF01975 Survival protein SurE AMD27_10505 PF07943 Penicillin-binding protein 5, C-terminal domain AMD27_10505 PF00768 D-alanyl-D-alanine carboxypeptidase AMD27_10510 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_10525 PF05275 Copper resistance protein B precursor (CopB) AMD27_10530 PF07731 Multicopper oxidase AMD27_10530 PF07732 Multicopper oxidase AMD27_10530 PF00394 Multicopper oxidase AMD27_10540 PF00293 NUDIX domain AMD27_10550 PF04356 Protein of unknown function (DUF489) AMD27_10555 PF08328 Adenylosuccinate lyase C-terminal AMD27_10555 PF00206 Lyase AMD27_10570 PF01343 Peptidase family S49 AMD27_10570 PF08496 Peptidase family S49 N-terminal AMD27_10575 PF01966 HD domain AMD27_10580 PF07499 RuvA, C-terminal domain AMD27_10580 PF01330 RuvA N terminal domain AMD27_10585 PF05491 RuvB C-terminal winged helix domain AMD27_10585 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD27_10585 PF17864 RuvB AAA lid domain AMD27_10595 PF03061 Thioesterase superfamily AMD27_10600 PF01618 MotA/TolQ/ExbB proton channel family AMD27_10605 PF02472 Biopolymer transport protein ExbD/TolR AMD27_10620 PF07676 WD40-like Beta Propeller Repeat AMD27_10620 PF04052 TolB amino-terminal domain AMD27_10625 PF00691 OmpA family AMD27_10635 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD27_10640 PF00588 SpoU rRNA Methylase family AMD27_10640 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD27_10660 PF03449 Transcription elongation factor, N-terminal AMD27_10660 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD27_10665 PF00464 Serine hydroxymethyltransferase AMD27_10695 PF00005 ABC transporter AMD27_10700 PF01061 ABC-2 type transporter AMD27_10705 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD27_10705 PF14489 QueF-like protein AMD27_10715 PF01098 Cell cycle protein AMD27_10720 PF13406 Transglycosylase SLT domain AMD27_10725 PF05036 Sporulation related domain AMD27_10725 PF03330 Lytic transglycolase AMD27_10740 PF00889 Elongation factor TS AMD27_10745 PF00318 Ribosomal protein S2 AMD27_10755 PF00557 Metallopeptidase family M24 AMD27_10770 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD27_10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_10775 PF03466 LysR substrate binding domain AMD27_10780 PF02678 Pirin AMD27_10780 PF05726 Pirin C-terminal cupin domain AMD27_10795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_10795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD27_10800 PF04055 Radical SAM superfamily AMD27_10810 PF00108 Thiolase, N-terminal domain AMD27_10810 PF02803 Thiolase, C-terminal domain AMD27_10845 PF05221 S-adenosyl-L-homocysteine hydrolase AMD27_10845 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD27_10850 PF02219 Methylenetetrahydrofolate reductase AMD27_10855 PF04452 RNA methyltransferase AMD27_10860 PF00563 EAL domain AMD27_10860 PF00990 Diguanylate cyclase, GGDEF domain AMD27_10860 PF03707 Bacterial signalling protein N terminal repeat AMD27_10865 PF00390 Malic enzyme, N-terminal domain AMD27_10865 PF03949 Malic enzyme, NAD binding domain AMD27_10865 PF01515 Phosphate acetyl/butaryl transferase AMD27_10870 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD27_10870 PF01743 Poly A polymerase head domain AMD27_10890 PF00152 tRNA synthetases class II (D, K and N) AMD27_10895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD27_10895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD27_10895 PF11890 Domain of unknown function (DUF3410) AMD27_10900 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD27_10905 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD27_10910 PF00005 ABC transporter AMD27_10915 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_10920 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_10930 PF02470 MlaD protein AMD27_10940 PF04403 Paraquat-inducible protein A AMD27_11000 PF04829 Pre-toxin domain with VENN motif AMD27_11000 PF05860 haemagglutination activity domain AMD27_11000 PF13018 Extended Signal Peptide of Type V secretion system AMD27_11000 PF13332 Hemagglutinin repeat AMD27_11005 PF17287 POTRA domain AMD27_11005 PF08479 POTRA domain, ShlB-type AMD27_11005 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD27_11015 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_11015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD27_11025 PF00892 EamA-like transporter family AMD27_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_11030 PF03466 LysR substrate binding domain AMD27_11035 PF00764 Arginosuccinate synthase AMD27_11040 PF00990 Diguanylate cyclase, GGDEF domain AMD27_11040 PF01590 GAF domain AMD27_11040 PF00563 EAL domain AMD27_11040 PF00360 Phytochrome region AMD27_11045 PF01979 Amidohydrolase family AMD27_11050 PF00929 Exonuclease AMD27_11070 PF00266 Aminotransferase class-V AMD27_11095 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD27_11095 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD27_11105 PF01012 Electron transfer flavoprotein domain AMD27_11105 PF00766 Electron transfer flavoprotein FAD-binding domain AMD27_11110 PF01012 Electron transfer flavoprotein domain AMD27_11115 PF01810 LysE type translocator AMD27_11120 PF01037 Lrp/AsnC ligand binding domain AMD27_11130 PF02899 Phage integrase, N-terminal SAM-like domain AMD27_11130 PF00589 Phage integrase family AMD27_11140 PF01678 Diaminopimelate epimerase AMD27_11145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD27_11145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD27_11155 PF00324 Amino acid permease AMD27_11160 PF01235 Sodium:alanine symporter family AMD27_11170 PF18073 Rubredoxin metal binding domain AMD27_11180 PF01177 Asp/Glu/Hydantoin racemase AMD27_11185 PF13180 PDZ domain AMD27_11185 PF17820 PDZ domain AMD27_11190 PF01784 NIF3 (NGG1p interacting factor 3) AMD27_11195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD27_11195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD27_11230 PF01098 Cell cycle protein AMD27_11240 PF01040 UbiA prenyltransferase family AMD27_11245 PF04345 Chorismate lyase AMD27_11270 PF00117 Glutamine amidotransferase class-I AMD27_11275 PF00591 Glycosyl transferase family, a/b domain AMD27_11275 PF02885 Glycosyl transferase family, helical bundle domain AMD27_11280 PF00218 Indole-3-glycerol phosphate synthase AMD27_11290 PF01227 GTP cyclohydrolase I AMD27_11315 PF04143 Sulphur transport AMD27_11320 PF13737 Transposase DDE domain AMD27_11325 PF05675 Protein of unknown function (DUF817) AMD27_11330 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD27_11340 PF17954 Quercetinase C-terminal cupin domain AMD27_11340 PF02678 Pirin AMD27_11350 PF13737 Transposase DDE domain AMD27_11355 PF13340 Putative transposase of IS4/5 family (DUF4096) AMD27_11360 PF00106 short chain dehydrogenase AMD27_11370 PF03466 LysR substrate binding domain AMD27_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_11375 PF13737 Transposase DDE domain AMD27_11420 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD27_11420 PF03449 Transcription elongation factor, N-terminal AMD27_11425 PF01464 Transglycosylase SLT domain AMD27_11425 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD27_11435 PF01171 PP-loop family AMD27_11440 PF01464 Transglycosylase SLT domain AMD27_11440 PF10145 Phage-related minor tail protein AMD27_11440 PF01551 Peptidase family M23 AMD27_11445 PF01435 Peptidase family M48 AMD27_11460 PF00873 AcrB/AcrD/AcrF family AMD27_11465 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD27_11475 PF01219 Prokaryotic diacylglycerol kinase AMD27_11495 PF00118 TCP-1/cpn60 chaperonin family AMD27_11500 PF00166 Chaperonin 10 Kd subunit AMD27_11505 PF00149 Calcineurin-like phosphoesterase AMD27_11510 PF00781 Diacylglycerol kinase catalytic domain AMD27_11515 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMD27_11515 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMD27_11520 PF00083 Sugar (and other) transporter AMD27_11535 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD27_11535 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD27_11555 PF09423 PhoD-like phosphatase AMD27_11555 PF16655 PhoD-like phosphatase, N-terminal domain AMD27_11575 PF12034 Domain of unknown function (DUF3520) AMD27_11575 PF00092 von Willebrand factor type A domain AMD27_11575 PF12450 von Willebrand factor AMD27_11580 PF00809 Pterin binding enzyme AMD27_11585 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_11585 PF06480 FtsH Extracellular AMD27_11585 PF01434 Peptidase family M41 AMD27_11585 PF17862 AAA+ lid domain AMD27_11590 PF01728 FtsJ-like methyltransferase AMD27_11595 PF01985 CRS1 / YhbY (CRM) domain AMD27_11605 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD27_11605 PF00117 Glutamine amidotransferase class-I AMD27_11610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD27_11610 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD27_11610 PF02142 MGS-like domain AMD27_11615 PF03449 Transcription elongation factor, N-terminal AMD27_11615 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD27_11625 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_11635 PF01527 Transposase AMD27_11645 PF00582 Universal stress protein family AMD27_11650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD27_11655 PF00561 alpha/beta hydrolase fold AMD27_11665 PF00999 Sodium/hydrogen exchanger family AMD27_11670 PF04228 Putative neutral zinc metallopeptidase AMD27_11675 PF05661 Protein of unknown function (DUF808) AMD27_11680 PF00579 tRNA synthetases class I (W and Y) AMD27_11690 PF15975 Flotillin AMD27_11690 PF01145 SPFH domain / Band 7 family AMD27_11705 PF01553 Acyltransferase AMD27_11710 PF00463 Isocitrate lyase family AMD27_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_11715 PF03466 LysR substrate binding domain AMD27_11720 PF03471 Transporter associated domain AMD27_11720 PF00571 CBS domain AMD27_11720 PF01595 Cyclin M transmembrane N-terminal domain AMD27_11725 PF03600 Citrate transporter AMD27_11730 PF13737 Transposase DDE domain AMD27_11750 PF04239 Protein of unknown function (DUF421) AMD27_11765 PF00909 Ammonium Transporter Family AMD27_11785 PF01734 Patatin-like phospholipase AMD27_11795 PF01145 SPFH domain / Band 7 family AMD27_11800 PF00474 Sodium:solute symporter family AMD27_11805 PF00348 Polyprenyl synthetase AMD27_11815 PF04303 PrpF protein AMD27_11820 PF00324 Amino acid permease AMD27_11850 PF01507 Phosphoadenosine phosphosulfate reductase family AMD27_11855 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMD27_11855 PF06974 Protein of unknown function (DUF1298) AMD27_11860 PF10150 Ribonuclease E/G family AMD27_11860 PF00575 S1 RNA binding domain AMD27_11865 PF02545 Maf-like protein AMD27_11875 PF04085 rod shape-determining protein MreC AMD27_11885 PF02686 Glu-tRNAGln amidotransferase C subunit AMD27_11890 PF01425 Amidase AMD27_11895 PF02934 GatB/GatE catalytic domain AMD27_11895 PF02637 GatB domain AMD27_11920 PF03466 LysR substrate binding domain AMD27_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_11935 PF05992 SbmA/BacA-like family AMD27_11950 PF00535 Glycosyl transferase family 2 AMD27_11955 PF14883 Hypothetical glycosyl hydrolase family 13 AMD27_11955 PF01522 Polysaccharide deacetylase AMD27_11960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_11965 PF07152 YaeQ protein AMD27_11970 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD27_11970 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD27_11980 PF03061 Thioesterase superfamily AMD27_11985 PF01734 Patatin-like phospholipase AMD27_11990 PF03616 Sodium/glutamate symporter AMD27_12010 PF07690 Major Facilitator Superfamily AMD27_12015 PF12805 FUSC-like inner membrane protein yccS AMD27_12020 PF12805 FUSC-like inner membrane protein yccS AMD27_12030 PF00667 FAD binding domain AMD27_12030 PF00258 Flavodoxin AMD27_12030 PF00175 Oxidoreductase NAD-binding domain AMD27_12085 PF01476 LysM domain AMD27_12085 PF03734 L,D-transpeptidase catalytic domain AMD27_12090 PF04304 Protein of unknown function (DUF454) AMD27_12105 PF01546 Peptidase family M20/M25/M40 AMD27_12105 PF07687 Peptidase dimerisation domain AMD27_12115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_12115 PF00072 Response regulator receiver domain AMD27_12115 PF01627 Hpt domain AMD27_12115 PF01584 CheW-like domain AMD27_12120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD27_12120 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD27_12125 PF01584 CheW-like domain AMD27_12130 PF00072 Response regulator receiver domain AMD27_12135 PF00072 Response regulator receiver domain AMD27_12145 PF13533 Biotin-lipoyl like AMD27_12150 PF00873 AcrB/AcrD/AcrF family AMD27_12155 PF04073 Aminoacyl-tRNA editing domain AMD27_12155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD27_12155 PF03129 Anticodon binding domain AMD27_12180 PF00692 dUTPase AMD27_12190 PF10609 NUBPL iron-transfer P-loop NTPase AMD27_12210 PF01588 Putative tRNA binding domain AMD27_12210 PF09334 tRNA synthetases class I (M) AMD27_12220 PF05643 Putative bacterial lipoprotein (DUF799) AMD27_12230 PF03783 Curli production assembly/transport component CsgG AMD27_12260 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_12275 PF05552 Conserved TM helix AMD27_12290 PF00970 Oxidoreductase FAD-binding domain AMD27_12290 PF00175 Oxidoreductase NAD-binding domain AMD27_12295 PF03466 LysR substrate binding domain AMD27_12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_12300 PF13610 DDE domain AMD27_12315 PF00361 Proton-conducting membrane transporter AMD27_12320 PF00361 Proton-conducting membrane transporter AMD27_12325 PF00361 Proton-conducting membrane transporter AMD27_12325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD27_12330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD27_12335 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD27_12340 PF12838 4Fe-4S dicluster domain AMD27_12345 PF00146 NADH dehydrogenase AMD27_12350 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD27_12350 PF00384 Molybdopterin oxidoreductase AMD27_12350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMD27_12355 PF10531 SLBB domain AMD27_12355 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD27_12355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD27_12365 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD27_12365 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD27_12370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD27_12375 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD27_12385 PF00672 HAMP domain AMD27_12385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_12385 PF00512 His Kinase A (phospho-acceptor) domain AMD27_12390 PF00486 Transcriptional regulatory protein, C terminal AMD27_12390 PF00072 Response regulator receiver domain AMD27_12395 PF00317 Ribonucleotide reductase, all-alpha domain AMD27_12395 PF03477 ATP cone domain AMD27_12395 PF02867 Ribonucleotide reductase, barrel domain AMD27_12400 PF00268 Ribonucleotide reductase, small chain AMD27_12420 PF07690 Major Facilitator Superfamily AMD27_12430 PF13193 AMP-binding enzyme C-terminal domain AMD27_12430 PF00550 Phosphopantetheine attachment site AMD27_12430 PF00975 Thioesterase domain AMD27_12430 PF00668 Condensation domain AMD27_12430 PF13193 AMP-binding enzyme C-terminal domain AMD27_12430 PF00501 AMP-binding enzyme AMD27_12430 PF00975 Thioesterase domain AMD27_12430 PF00550 Phosphopantetheine attachment site AMD27_12430 PF00668 Condensation domain AMD27_12430 PF00501 AMP-binding enzyme AMD27_12440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD27_12440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD27_12445 PF00440 Bacterial regulatory proteins, tetR family AMD27_12465 PF01476 LysM domain AMD27_12465 PF04972 BON domain AMD27_12470 PF00550 Phosphopantetheine attachment site AMD27_12480 PF00698 Acyl transferase domain AMD27_12495 PF01783 Ribosomal L32p protein family AMD27_12500 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD27_12505 PF04315 Elongation factor P hydroxylase AMD27_12510 PF01300 Telomere recombination AMD27_12515 PF02616 Segregation and condensation protein ScpA AMD27_12520 PF04079 Segregation and condensation complex subunit ScpB AMD27_12540 PF00155 Aminotransferase class I and II AMD27_12545 PF06968 Biotin and Thiamin Synthesis associated domain AMD27_12545 PF04055 Radical SAM superfamily AMD27_12545 PF00202 Aminotransferase class-III AMD27_12550 PF08241 Methyltransferase domain AMD27_12550 PF12697 Alpha/beta hydrolase family AMD27_12560 PF00578 AhpC/TSA family AMD27_12565 PF00210 Ferritin-like domain AMD27_12570 PF05971 RNA methyltransferase AMD27_12575 PF16363 GDP-mannose 4,6 dehydratase AMD27_12580 PF01653 NAD-dependent DNA ligase adenylation domain AMD27_12580 PF12826 Helix-hairpin-helix motif AMD27_12580 PF00533 BRCA1 C Terminus (BRCT) domain AMD27_12580 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD27_12580 PF03120 NAD-dependent DNA ligase OB-fold domain AMD27_12585 PF04354 ZipA, C-terminal FtsZ-binding domain AMD27_12590 PF06470 SMC proteins Flexible Hinge Domain AMD27_12590 PF02463 RecF/RecN/SMC N terminal domain AMD27_12600 PF01925 Sulfite exporter TauE/SafE AMD27_12610 PF03309 Type III pantothenate kinase AMD27_12625 PF02978 Signal peptide binding domain AMD27_12625 PF00448 SRP54-type protein, GTPase domain AMD27_12625 PF02881 SRP54-type protein, helical bundle domain AMD27_12630 PF01578 Cytochrome C assembly protein AMD27_12640 PF01207 Dihydrouridine synthase (Dus) AMD27_12660 PF04717 Type VI secretion system, phage-baseplate injector AMD27_12670 PF00293 NUDIX domain AMD27_12690 PF08274 PhnA Zinc-Ribbon AMD27_12690 PF03831 PhnA domain AMD27_12700 PF00849 RNA pseudouridylate synthase AMD27_12715 PF00330 Aconitase family (aconitate hydratase) AMD27_12715 PF00694 Aconitase C-terminal domain AMD27_12730 PF01571 Aminomethyltransferase folate-binding domain AMD27_12755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD27_12760 PF06827 Zinc finger found in FPG and IleRS AMD27_12760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD27_12760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD27_12780 PF00860 Permease family AMD27_12785 PF08468 Methyltransferase small domain N-terminal AMD27_12785 PF05175 Methyltransferase small domain AMD27_12790 PF00324 Amino acid permease AMD27_12800 PF13505 Outer membrane protein beta-barrel domain AMD27_12800 PF00691 OmpA family AMD27_12810 PF00108 Thiolase, N-terminal domain AMD27_12810 PF02803 Thiolase, C-terminal domain AMD27_12825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD27_12825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD27_12840 PF00291 Pyridoxal-phosphate dependent enzyme AMD27_12845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD27_12850 PF00593 TonB dependent receptor AMD27_12850 PF07715 TonB-dependent Receptor Plug Domain AMD27_12855 PF01923 Cobalamin adenosyltransferase AMD27_12875 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD27_12895 PF00324 Amino acid permease AMD27_12900 PF00072 Response regulator receiver domain AMD27_12900 PF00486 Transcriptional regulatory protein, C terminal AMD27_12905 PF00672 HAMP domain AMD27_12905 PF00512 His Kinase A (phospho-acceptor) domain AMD27_12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_12915 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_12915 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD27_12915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_12915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_12920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_12920 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_12920 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD27_12920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_12930 PF06146 Phosphate-starvation-inducible E AMD27_12950 PF07715 TonB-dependent Receptor Plug Domain AMD27_12950 PF00593 TonB dependent receptor AMD27_12965 PF02938 GAD domain AMD27_12965 PF01336 OB-fold nucleic acid binding domain AMD27_12965 PF00152 tRNA synthetases class II (D, K and N) AMD27_13005 PF17103 Stealth protein CR4, conserved region 4 AMD27_13005 PF17102 Stealth protein CR3, conserved region 3 AMD27_13005 PF11380 Stealth protein CR2, conserved region 2 AMD27_13005 PF17101 Stealth protein CR1, conserved region 1 AMD27_13015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD27_13015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD27_13015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD27_13020 PF01370 NAD dependent epimerase/dehydratase family AMD27_13030 PF01063 Amino-transferase class IV AMD27_13035 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD27_13035 PF08335 GlnD PII-uridylyltransferase AMD27_13040 PF00672 HAMP domain AMD27_13040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD27_13040 PF00072 Response regulator receiver domain AMD27_13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_13040 PF00512 His Kinase A (phospho-acceptor) domain AMD27_13040 PF01627 Hpt domain AMD27_13050 PF02566 OsmC-like protein AMD27_13055 PF01047 MarR family AMD27_13285 PF00589 Phage integrase family AMD27_13295 PF02547 Queuosine biosynthesis protein AMD27_13315 PF01702 Queuine tRNA-ribosyltransferase AMD27_13320 PF02699 Preprotein translocase subunit AMD27_13325 PF07549 SecD/SecF GG Motif AMD27_13325 PF13721 SecD export protein N-terminal TM region AMD27_13325 PF02355 Protein export membrane protein AMD27_13330 PF07549 SecD/SecF GG Motif AMD27_13330 PF02355 Protein export membrane protein AMD27_13335 PF01648 4'-phosphopantetheinyl transferase superfamily AMD27_13345 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD27_13345 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD27_13360 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD27_13360 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD27_13370 PF04820 Tryptophan halogenase AMD27_13390 PF00221 Aromatic amino acid lyase AMD27_13405 PF07977 FabA-like domain AMD27_13415 PF00550 Phosphopantetheine attachment site AMD27_13420 PF00550 Phosphopantetheine attachment site AMD27_13435 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD27_13435 PF01926 50S ribosome-binding GTPase AMD27_13440 PF13360 PQQ-like domain AMD27_13440 PF01011 PQQ enzyme repeat AMD27_13450 PF03129 Anticodon binding domain AMD27_13450 PF13393 Histidyl-tRNA synthetase AMD27_13455 PF04551 GcpE protein AMD27_13460 PF13464 Domain of unknown function (DUF4115) AMD27_13470 PF04055 Radical SAM superfamily AMD27_13475 PF00334 Nucleoside diphosphate kinase AMD27_13480 PF04384 Iron-sulphur cluster assembly AMD27_13485 PF01569 PAP2 superfamily AMD27_13490 PF00534 Glycosyl transferases group 1 AMD27_13490 PF13439 Glycosyltransferase Family 4 AMD27_13495 PF00534 Glycosyl transferases group 1 AMD27_13495 PF13439 Glycosyltransferase Family 4 AMD27_13505 PF00082 Subtilase family AMD27_13515 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD27_13515 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD27_13520 PF10369 Small subunit of acetolactate synthase AMD27_13525 PF00205 Thiamine pyrophosphate enzyme, central domain AMD27_13525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD27_13525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD27_13535 PF08264 Anticodon-binding domain of tRNA AMD27_13535 PF00133 tRNA synthetases class I (I, L, M and V) AMD27_13535 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD27_13535 PF09334 tRNA synthetases class I (M) AMD27_13550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD27_13555 PF00005 ABC transporter AMD27_13555 PF02687 FtsX-like permease family AMD27_13555 PF12704 MacB-like periplasmic core domain AMD27_13560 PF02321 Outer membrane efflux protein AMD27_13575 PF04717 Type VI secretion system, phage-baseplate injector AMD27_13595 PF00929 Exonuclease AMD27_13600 PF03193 RsgA GTPase AMD27_13610 PF00462 Glutaredoxin AMD27_13615 PF02556 Preprotein translocase subunit SecB AMD27_13625 PF04127 DNA / pantothenate metabolism flavoprotein AMD27_13625 PF02441 Flavoprotein AMD27_13630 PF04002 RadC-like JAB domain AMD27_13635 PF01062 Bestrophin, RFP-TM, chloride channel AMD27_13640 PF02811 PHP domain AMD27_13645 PF04279 Intracellular septation protein A AMD27_13650 PF03795 YCII-related domain AMD27_13660 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMD27_13660 PF01266 FAD dependent oxidoreductase AMD27_13670 PF04461 Protein of unknown function (DUF520) AMD27_13685 PF03061 Thioesterase superfamily AMD27_13690 PF00085 Thioredoxin AMD27_13695 PF04273 Putative phosphatase (DUF442) AMD27_13695 PF00753 Metallo-beta-lactamase superfamily AMD27_13710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_13710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD27_13745 PF01066 CDP-alcohol phosphatidyltransferase AMD27_13750 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD27_13775 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD27_13775 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD27_13785 PF01551 Peptidase family M23 AMD27_13785 PF10145 Phage-related minor tail protein AMD27_13785 PF01464 Transglycosylase SLT domain AMD27_13790 PF00919 Uncharacterized protein family UPF0004 AMD27_13790 PF04055 Radical SAM superfamily AMD27_13790 PF01938 TRAM domain AMD27_13795 PF02562 PhoH-like protein AMD27_13800 PF02130 Uncharacterized protein family UPF0054 AMD27_13805 PF05552 Conserved TM helix AMD27_13805 PF00924 Mechanosensitive ion channel AMD27_13815 PF03544 Gram-negative bacterial TonB protein C-terminal AMD27_13840 PF03358 NADPH-dependent FMN reductase AMD27_13845 PF03631 Virulence factor BrkB AMD27_13850 PF00892 EamA-like transporter family AMD27_13855 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD27_13895 PF17876 Cold shock domain AMD27_13895 PF08461 Ribonuclease R winged-helix domain AMD27_13895 PF08206 Ribonuclease B OB domain AMD27_13895 PF00773 RNB domain AMD27_13895 PF00575 S1 RNA binding domain AMD27_13900 PF01432 Peptidase family M3 AMD27_13905 PF09526 Probable metal-binding protein (DUF2387) AMD27_13935 PF03937 Flavinator of succinate dehydrogenase AMD27_13940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_13940 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_13940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_13945 PF00743 Flavin-binding monooxygenase-like AMD27_13950 PF01196 Ribosomal protein L17 AMD27_13955 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD27_13955 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD27_13955 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD27_13960 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD27_13960 PF01479 S4 domain AMD27_13965 PF00411 Ribosomal protein S11 AMD27_13970 PF00416 Ribosomal protein S13/S18 AMD27_13975 PF00444 Ribosomal protein L36 AMD27_13980 PF00344 SecY translocase AMD27_13985 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD27_13990 PF00327 Ribosomal protein L30p/L7e AMD27_13995 PF00333 Ribosomal protein S5, N-terminal domain AMD27_13995 PF03719 Ribosomal protein S5, C-terminal domain AMD27_14000 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD27_14005 PF00347 Ribosomal protein L6 AMD27_14010 PF00410 Ribosomal protein S8 AMD27_14015 PF00253 Ribosomal protein S14p/S29e AMD27_14020 PF00673 ribosomal L5P family C-terminus AMD27_14020 PF00281 Ribosomal protein L5 AMD27_14025 PF00467 KOW motif AMD27_14025 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD27_14030 PF00238 Ribosomal protein L14p/L23e AMD27_14035 PF00366 Ribosomal protein S17 AMD27_14040 PF00831 Ribosomal L29 protein AMD27_14045 PF00252 Ribosomal protein L16p/L10e AMD27_14050 PF07650 KH domain AMD27_14050 PF00189 Ribosomal protein S3, C-terminal domain AMD27_14055 PF00237 Ribosomal protein L22p/L17e AMD27_14060 PF00203 Ribosomal protein S19 AMD27_14065 PF03947 Ribosomal Proteins L2, C-terminal domain AMD27_14065 PF00181 Ribosomal Proteins L2, RNA binding domain AMD27_14070 PF00276 Ribosomal protein L23 AMD27_14075 PF00573 Ribosomal protein L4/L1 family AMD27_14080 PF00297 Ribosomal protein L3 AMD27_14085 PF00338 Ribosomal protein S10p/S20e AMD27_14090 PF00958 GMP synthase C terminal domain AMD27_14090 PF00117 Glutamine amidotransferase class-I AMD27_14095 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD27_14100 PF05872 Bacterial protein of unknown function (DUF853) AMD27_14105 PF00970 Oxidoreductase FAD-binding domain AMD27_14105 PF00042 Globin AMD27_14105 PF00175 Oxidoreductase NAD-binding domain AMD27_14110 PF02082 Transcriptional regulator AMD27_14115 PF01926 50S ribosome-binding GTPase AMD27_14130 PF00375 Sodium:dicarboxylate symporter family AMD27_14140 PF01553 Acyltransferase AMD27_14150 PF00271 Helicase conserved C-terminal domain AMD27_14150 PF17191 RecG wedge domain AMD27_14150 PF00270 DEAD/DEAH box helicase AMD27_14155 PF00156 Phosphoribosyl transferase domain AMD27_14165 PF03641 Possible lysine decarboxylase AMD27_14170 PF01544 CorA-like Mg2+ transporter protein AMD27_14185 PF02470 MlaD protein AMD27_14190 PF02405 Permease MlaE AMD27_14195 PF00005 ABC transporter AMD27_14200 PF00270 DEAD/DEAH box helicase AMD27_14200 PF00271 Helicase conserved C-terminal domain AMD27_14205 PF00459 Inositol monophosphatase family AMD27_14210 PF02779 Transketolase, pyrimidine binding domain AMD27_14210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD27_14210 PF02780 Transketolase, C-terminal domain AMD27_14215 PF00925 GTP cyclohydrolase II AMD27_14230 PF08501 Shikimate dehydrogenase substrate binding domain AMD27_14230 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD27_14230 PF01488 Shikimate / quinate 5-dehydrogenase AMD27_14240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD27_14240 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD27_14240 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_14240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_14255 PF06969 HemN C-terminal domain AMD27_14255 PF04055 Radical SAM superfamily AMD27_14265 PF01554 MatE AMD27_14270 PF00158 Sigma-54 interaction domain AMD27_14285 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD27_14285 PF00005 ABC transporter AMD27_14295 PF11862 Domain of unknown function (DUF3382) AMD27_14295 PF02653 Branched-chain amino acid transport system / permease component AMD27_14305 PF00005 ABC transporter AMD27_14310 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD27_14310 PF02770 Acyl-CoA dehydrogenase, middle domain AMD27_14310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_14315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_14315 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD27_14320 PF03109 ABC1 family AMD27_14325 PF01197 Ribosomal protein L31 AMD27_14330 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD27_14345 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_14345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD27_14345 PF13247 4Fe-4S dicluster domain AMD27_14355 PF03884 DNA gyrase inhibitor YacG AMD27_14365 PF00753 Metallo-beta-lactamase superfamily AMD27_14370 PF00762 Ferrochelatase AMD27_14380 PF01177 Asp/Glu/Hydantoin racemase AMD27_14405 PF04717 Type VI secretion system, phage-baseplate injector AMD27_14410 PF01206 Sulfurtransferase TusA AMD27_14415 PF03471 Transporter associated domain AMD27_14415 PF00571 CBS domain AMD27_14420 PF00795 Carbon-nitrogen hydrolase AMD27_14430 PF07963 Prokaryotic N-terminal methylation motif AMD27_14430 PF08334 Type II secretion system (T2SS), protein G AMD27_14435 PF00482 Type II secretion system (T2SS), protein F AMD27_14440 PF18074 Primosomal protein N C-terminal domain AMD27_14440 PF17764 3′ DNA-binding domain (3′BD) AMD27_14440 PF00271 Helicase conserved C-terminal domain AMD27_14440 PF00270 DEAD/DEAH box helicase AMD27_14440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD27_14445 PF00999 Sodium/hydrogen exchanger family AMD27_14445 PF02254 TrkA-N domain AMD27_14450 PF01430 Hsp33 protein AMD27_14455 PF01556 DnaJ C terminal domain AMD27_14455 PF00226 DnaJ domain AMD27_14475 PF01544 CorA-like Mg2+ transporter protein AMD27_14480 PF03725 3' exoribonuclease family, domain 2 AMD27_14480 PF00575 S1 RNA binding domain AMD27_14480 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD27_14480 PF00013 KH domain AMD27_14480 PF01138 3' exoribonuclease family, domain 1 AMD27_14485 PF00312 Ribosomal protein S15 AMD27_14490 PF00144 Beta-lactamase AMD27_14495 PF13538 UvrD-like helicase C-terminal domain AMD27_14500 PF12705 PD-(D/E)XK nuclease superfamily AMD27_14500 PF00580 UvrD/REP helicase N-terminal domain AMD27_14500 PF13361 UvrD-like helicase C-terminal domain AMD27_14505 PF17946 RecC C-terminal domain AMD27_14515 PF03976 Polyphosphate kinase 2 (PPK2) AMD27_14525 PF01209 ubiE/COQ5 methyltransferase family AMD27_14535 PF03109 ABC1 family AMD27_14540 PF01494 FAD binding domain AMD27_14545 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD27_14560 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD27_14560 PF00361 Proton-conducting membrane transporter AMD27_14560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD27_14560 PF13244 Domain of unknown function (DUF4040) AMD27_14565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD27_14570 PF00361 Proton-conducting membrane transporter AMD27_14580 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD27_14595 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD27_14595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD27_14600 PF01493 GXGXG motif AMD27_14600 PF00310 Glutamine amidotransferases class-II AMD27_14600 PF04898 Glutamate synthase central domain AMD27_14600 PF01645 Conserved region in glutamate synthase AMD27_14610 PF01761 3-dehydroquinate synthase AMD27_14615 PF01202 Shikimate kinase AMD27_14620 PF00263 Bacterial type II and III secretion system protein AMD27_14620 PF03958 Bacterial type II/III secretion system short domain AMD27_14620 PF07660 Secretin and TonB N terminus short domain AMD27_14620 PF11741 AMIN domain AMD27_14645 PF00905 Penicillin binding protein transpeptidase domain AMD27_14645 PF17092 Penicillin-binding protein OB-like domain AMD27_14645 PF00912 Transglycosylase AMD27_14650 PF13847 Methyltransferase domain AMD27_14655 PF00953 Glycosyl transferase family 4 AMD27_14660 PF01225 Mur ligase family, catalytic domain AMD27_14660 PF02875 Mur ligase family, glutamate ligase domain AMD27_14660 PF08245 Mur ligase middle domain AMD27_14665 PF08245 Mur ligase middle domain AMD27_14665 PF02875 Mur ligase family, glutamate ligase domain AMD27_14665 PF01225 Mur ligase family, catalytic domain AMD27_14670 PF00905 Penicillin binding protein transpeptidase domain AMD27_14670 PF03717 Penicillin-binding Protein dimerisation domain AMD27_14680 PF01795 MraW methylase family AMD27_14700 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD27_14720 PF00005 ABC transporter AMD27_14720 PF12848 ABC transporter AMD27_14725 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD27_14730 PF00106 short chain dehydrogenase AMD27_14745 PF00575 S1 RNA binding domain AMD27_14745 PF09371 Tex-like protein N-terminal domain AMD27_14745 PF16921 Tex protein YqgF-like domain AMD27_14745 PF17674 HHH domain AMD27_14750 PF00072 Response regulator receiver domain AMD27_14750 PF00486 Transcriptional regulatory protein, C terminal AMD27_14755 PF00672 HAMP domain AMD27_14755 PF00512 His Kinase A (phospho-acceptor) domain AMD27_14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_14760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMD27_14760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMD27_14765 PF00583 Acetyltransferase (GNAT) family AMD27_14790 PF00475 Imidazoleglycerol-phosphate dehydratase AMD27_14795 PF00117 Glutamine amidotransferase class-I AMD27_14815 PF00977 Histidine biosynthesis protein AMD27_14835 PF00313 'Cold-shock' DNA-binding domain AMD27_14840 PF01636 Phosphotransferase enzyme family AMD27_14845 PF00977 Histidine biosynthesis protein AMD27_14855 PF00230 Major intrinsic protein AMD27_14875 PF02705 K+ potassium transporter AMD27_14885 PF00589 Phage integrase family AMD27_14885 PF14659 Phage integrase, N-terminal SAM-like domain AMD27_14885 PF13356 Arm DNA-binding domain AMD27_14895 PF13018 Extended Signal Peptide of Type V secretion system AMD27_14895 PF03895 YadA-like membrane anchor domain AMD27_14895 PF05658 Head domain of trimeric autotransporter adhesin AMD27_14895 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_14900 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_14900 PF13359 DDE superfamily endonuclease AMD27_14925 PF01593 Flavin containing amine oxidoreductase AMD27_14935 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD27_14935 PF00578 AhpC/TSA family AMD27_14940 PF00436 Single-strand binding protein family AMD27_14945 PF07690 Major Facilitator Superfamily AMD27_14955 PF03070 TENA/THI-4/PQQC family AMD27_14955 PF08543 Phosphomethylpyrimidine kinase AMD27_14955 PF02581 Thiamine monophosphate synthase AMD27_14970 PF00005 ABC transporter AMD27_14970 PF17755 UvrA DNA-binding domain AMD27_14970 PF17760 UvrA interaction domain AMD27_14980 PF00892 EamA-like transporter family AMD27_14990 PF07690 Major Facilitator Superfamily AMD27_14995 PF01638 HxlR-like helix-turn-helix AMD27_15015 PF00905 Penicillin binding protein transpeptidase domain AMD27_15045 PF00474 Sodium:solute symporter family AMD27_15050 PF04341 Protein of unknown function, DUF485 AMD27_15055 PF00072 Response regulator receiver domain AMD27_15055 PF09456 RcsC Alpha-Beta-Loop (ABL) AMD27_15055 PF00512 His Kinase A (phospho-acceptor) domain AMD27_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_15065 PF00196 Bacterial regulatory proteins, luxR family AMD27_15065 PF00072 Response regulator receiver domain AMD27_15070 PF03358 NADPH-dependent FMN reductase AMD27_15075 PF00296 Luciferase-like monooxygenase AMD27_15080 PF00677 Lumazine binding domain AMD27_15085 PF07690 Major Facilitator Superfamily AMD27_15100 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_15100 PF13359 DDE superfamily endonuclease AMD27_15105 PF13359 DDE superfamily endonuclease AMD27_15105 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_15165 PF13359 DDE superfamily endonuclease AMD27_15165 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_15190 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD27_15190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD27_15195 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD27_15195 PF00501 AMP-binding enzyme AMD27_15195 PF13193 AMP-binding enzyme C-terminal domain AMD27_15200 PF00924 Mechanosensitive ion channel AMD27_15205 PF04452 RNA methyltransferase AMD27_15210 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD27_15215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD27_15225 PF03462 PCRF domain AMD27_15225 PF00472 RF-1 domain AMD27_15230 PF13359 DDE superfamily endonuclease AMD27_15230 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_15250 PF17768 RecJ OB domain AMD27_15250 PF02272 DHHA1 domain AMD27_15250 PF01368 DHH family AMD27_15255 PF01243 Pyridoxamine 5'-phosphate oxidase AMD27_15255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD27_15260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD27_15260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD27_15260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD27_15260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD27_15265 PF00571 CBS domain AMD27_15265 PF00478 IMP dehydrogenase / GMP reductase domain AMD27_15270 PF03692 Putative zinc- or iron-chelating domain AMD27_15275 PF01169 Uncharacterized protein family UPF0016 AMD27_15280 PF00364 Biotin-requiring enzyme AMD27_15280 PF02817 e3 binding domain AMD27_15280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD27_15285 PF00456 Transketolase, thiamine diphosphate binding domain AMD27_15285 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD27_15300 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD27_15305 PF12327 FtsZ family, C-terminal domain AMD27_15305 PF00091 Tubulin/FtsZ family, GTPase domain AMD27_15310 PF02491 SHS2 domain inserted in FTSA AMD27_15315 PF03799 Cell division protein FtsQ AMD27_15315 PF08478 POTRA domain, FtsQ-type AMD27_15320 PF07478 D-ala D-ala ligase C-terminus AMD27_15320 PF01820 D-ala D-ala ligase N-terminus AMD27_15325 PF08245 Mur ligase middle domain AMD27_15325 PF02875 Mur ligase family, glutamate ligase domain AMD27_15325 PF01225 Mur ligase family, catalytic domain AMD27_15330 PF04101 Glycosyltransferase family 28 C-terminal domain AMD27_15330 PF03033 Glycosyltransferase family 28 N-terminal domain AMD27_15335 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD27_15335 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD27_15345 PF00156 Phosphoribosyl transferase domain AMD27_15350 PF03372 Endonuclease/Exonuclease/phosphatase family AMD27_15365 PF07859 alpha/beta hydrolase fold AMD27_15370 PF00990 Diguanylate cyclase, GGDEF domain AMD27_15400 PF00583 Acetyltransferase (GNAT) family AMD27_15415 PF00005 ABC transporter AMD27_15420 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD27_15420 PF00005 ABC transporter AMD27_15430 PF02653 Branched-chain amino acid transport system / permease component AMD27_15440 PF01751 Toprim domain AMD27_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_15440 PF00204 DNA gyrase B AMD27_15440 PF00986 DNA gyrase B subunit, carboxyl terminus AMD27_15445 PF05728 Uncharacterised protein family (UPF0227) AMD27_15460 PF02600 Disulfide bond formation protein DsbB AMD27_15465 PF04262 Glutamate-cysteine ligase AMD27_15480 PF04286 Protein of unknown function (DUF445) AMD27_15485 PF03432 Relaxase/Mobilisation nuclease domain AMD27_15525 PF00155 Aminotransferase class I and II AMD27_15530 PF01554 MatE AMD27_15535 PF00106 short chain dehydrogenase AMD27_15545 PF00072 Response regulator receiver domain AMD27_15545 PF00486 Transcriptional regulatory protein, C terminal AMD27_15550 PF11808 Phosphate regulon sensor protein PhoR AMD27_15550 PF00512 His Kinase A (phospho-acceptor) domain AMD27_15550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD27_15550 PF00989 PAS fold AMD27_15555 PF02666 Phosphatidylserine decarboxylase AMD27_15560 PF00581 Rhodanese-like domain AMD27_15565 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD27_15565 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD27_15575 PF06628 Catalase-related immune-responsive AMD27_15575 PF00199 Catalase AMD27_15580 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD27_15610 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD27_15610 PF00925 GTP cyclohydrolase II AMD27_15615 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD27_15620 PF01029 NusB family AMD27_15625 PF00586 AIR synthase related protein, N-terminal domain AMD27_15625 PF02769 AIR synthase related protein, C-terminal domain AMD27_15630 PF04608 Phosphatidylglycerophosphatase A AMD27_15635 PF00132 Bacterial transferase hexapeptide (six repeats) AMD27_15635 PF14602 Hexapeptide repeat of succinyl-transferase AMD27_15635 PF12804 MobA-like NTP transferase domain AMD27_15640 PF01380 SIS domain AMD27_15645 PF08721 TnsA endonuclease C terminal AMD27_15645 PF08722 TnsA endonuclease N terminal AMD27_15650 PF00665 Integrase core domain AMD27_15655 PF11426 Tn7 transposition regulator TnsC AMD27_15655 PF13401 AAA domain AMD27_15660 PF15978 Tn7-like transposition protein D AMD27_15660 PF06527 TniQ AMD27_15685 PF02384 N-6 DNA Methylase AMD27_15685 PF12161 HsdM N-terminal domain AMD27_15690 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMD27_15690 PF18766 SWI2/SNF2 ATPase AMD27_15690 PF12008 Type I restriction and modification enzyme - subunit R C terminal AMD27_15695 PF01381 Helix-turn-helix AMD27_15735 PF01758 Sodium Bile acid symporter family AMD27_15740 PF00857 Isochorismatase family AMD27_15745 PF00701 Dihydrodipicolinate synthetase family AMD27_15755 PF01259 SAICAR synthetase AMD27_15760 PF16193 AAA C-terminal domain AMD27_15760 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_15760 PF12002 MgsA AAA+ ATPase C terminal AMD27_15765 PF07995 Glucose / Sorbosone dehydrogenase AMD27_15770 PF03692 Putative zinc- or iron-chelating domain AMD27_15785 PF14815 NUDIX domain AMD27_15785 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD27_15785 PF00633 Helix-hairpin-helix motif AMD27_15800 PF03352 Methyladenine glycosylase AMD27_15815 PF03466 LysR substrate binding domain AMD27_15815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD27_15820 PF07690 Major Facilitator Superfamily AMD27_15830 PF05173 Dihydrodipicolinate reductase, C-terminus AMD27_15830 PF01113 Dihydrodipicolinate reductase, N-terminus AMD27_15845 PF00583 Acetyltransferase (GNAT) family AMD27_15845 PF00696 Amino acid kinase family AMD27_15850 PF09084 NMT1/THI5 like AMD27_15855 PF09084 NMT1/THI5 like AMD27_15860 PF00296 Luciferase-like monooxygenase AMD27_15865 PF00528 Binding-protein-dependent transport system inner membrane component AMD27_15870 PF00005 ABC transporter AMD27_15875 PF00440 Bacterial regulatory proteins, tetR family AMD27_15875 PF17938 Tetracyclin repressor-like, C-terminal domain AMD27_15885 PF06574 FAD synthetase AMD27_15885 PF01687 Riboflavin kinase AMD27_15890 PF06827 Zinc finger found in FPG and IleRS AMD27_15890 PF08264 Anticodon-binding domain of tRNA AMD27_15890 PF00133 tRNA synthetases class I (I, L, M and V) AMD27_15895 PF01252 Signal peptidase (SPase) II AMD27_15900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD27_15910 PF07687 Peptidase dimerisation domain AMD27_15910 PF01546 Peptidase family M20/M25/M40 AMD27_15925 PF00691 OmpA family AMD27_15925 PF04972 BON domain AMD27_15980 PF07724 AAA domain (Cdc48 subfamily) AMD27_15980 PF17871 AAA lid domain AMD27_15980 PF10431 C-terminal, D2-small domain, of ClpB protein AMD27_15980 PF00004 ATPase family associated with various cellular activities (AAA) AMD27_16050 PF13406 Transglycosylase SLT domain AMD27_16055 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD27_16055 PF02222 ATP-grasp domain AMD27_16060 PF00731 AIR carboxylase AMD27_16070 PF08245 Mur ligase middle domain AMD27_16070 PF02875 Mur ligase family, glutamate ligase domain AMD27_16070 PF01225 Mur ligase family, catalytic domain AMD27_16090 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMD27_16090 PF13359 DDE superfamily endonuclease AMD27_16105 PF07690 Major Facilitator Superfamily AMD27_16110 PF03741 Integral membrane protein TerC family AMD27_16125 PF01979 Amidohydrolase family AMD27_16130 PF00156 Phosphoribosyl transferase domain AMD27_16140 PF10411 Disulfide bond isomerase protein N-terminus AMD27_16140 PF13098 Thioredoxin-like domain AMD27_16145 PF07690 Major Facilitator Superfamily AMD27_16155 PF10396 GTP-binding protein TrmE N-terminus AMD27_16155 PF12631 MnmE helical domain AMD27_16155 PF01926 50S ribosome-binding GTPase AMD27_16160 PF14849 YidC periplasmic domain AMD27_16160 PF02096 60Kd inner membrane protein AMD27_16165 PF01809 Putative membrane protein insertion efficiency factor AMD27_16170 PF00825 Ribonuclease P AMD27_16175 PF00468 Ribosomal protein L34 AMD27_16180 PF03895 YadA-like membrane anchor domain AMD27_16180 PF13018 Extended Signal Peptide of Type V secretion system AMD27_16180 PF05658 Head domain of trimeric autotransporter adhesin AMD27_16180 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_16185 PF03895 YadA-like membrane anchor domain AMD27_16185 PF05658 Head domain of trimeric autotransporter adhesin AMD27_16185 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD27_16185 PF13018 Extended Signal Peptide of Type V secretion system AMD27_16265 PF00816 H-NS histone family AMD27_16340 PF06965 Na+/H+ antiporter 1 AMD27_16340 PF01343 Peptidase family S49 AMD27_16445 PF13307 Helicase C-terminal domain AMD27_16480 PF01527 Transposase AMD27_16485 PF13276 HTH-like domain AMD27_16485 PF13683 Integrase core domain AMD27_16645 PF10411 Disulfide bond isomerase protein N-terminus AMD27_16645 PF13098 Thioredoxin-like domain AMD27_16670 PF14493 Helix-turn-helix domain AMD27_16670 PF05970 PIF1-like helicase AMD27_16710 PF00436 Single-strand binding protein family AMD27_16810 PF01051 Initiator Replication protein AMD27_16855 PF05816 Toxic anion resistance protein (TelA) AMD27_16930 PF00929 Exonuclease AMD27_16930 PF13307 Helicase C-terminal domain AMD27_16930 PF04851 Type III restriction enzyme, res subunit AMD27_17030 PF01527 Transposase AMD27_17035 PF13683 Integrase core domain AMD27_17035 PF13276 HTH-like domain AMD27_17470 PF01464 Transglycosylase SLT domain AMD27_17480 PF00437 Type II/IV secretion system protein AMD27_17480 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD27_17490 PF05736 OprF membrane domain AMD27_17490 PF00691 OmpA family AMD27_17550 PF06122 Conjugative relaxosome accessory transposon protein AMD27_17575 PF13361 UvrD-like helicase C-terminal domain AMD27_17575 PF00580 UvrD/REP helicase N-terminal domain AMD27_17625 PF13356 Arm DNA-binding domain AMD27_17625 PF14659 Phage integrase, N-terminal SAM-like domain AMD27_17625 PF00589 Phage integrase family AMD27_17755 PF00589 Phage integrase family AMD27_17755 PF02899 Phage integrase, N-terminal SAM-like domain AMD27_17795 PF01131 DNA topoisomerase AMD27_17795 PF01751 Toprim domain AMD27_17845 PF00300 Histidine phosphatase superfamily (branch 1) AMD27_17890 PF01638 HxlR-like helix-turn-helix