AMD27_00005 SM00382 ATPases associated with a variety of cellular activities AMD27_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD27_00010 SM00480 DNA polymerase III beta subunit AMD27_00020 SM00387 Histidine kinase-like ATPases AMD27_00020 SM00433 TopoisomeraseII AMD27_00060 SM00382 ATPases associated with a variety of cellular activities AMD27_00070 SM00422 helix_turn_helix, mercury resistance AMD27_00200 SM00830 Chorismate mutase type II AMD27_00220 SM00267 diguanylate cyclase AMD27_00250 SM00271 DnaJ molecular chaperone homology domain AMD27_00330 SM00644 AMD27_00330 AMD27_00355 SM00226 Low molecular weight phosphatase family AMD27_00440 SM00984 UDP binding domain AMD27_00525 SM00342 helix_turn_helix, arabinose operon control protein AMD27_00540 SM00836 DALR anticodon binding domain AMD27_00540 SM01016 Arginyl tRNA synthetase N terminal dom AMD27_00555 SM00919 Malic enzyme, NAD binding domain AMD27_00555 SM01274 AMD27_00555 AMD27_00575 SM00047 Lysozyme subfamily 2 AMD27_00605 SM00382 ATPases associated with a variety of cellular activities AMD27_00655 SM00382 ATPases associated with a variety of cellular activities AMD27_00715 SM00257 Lysin motif AMD27_00780 SM00248 ankyrin repeats AMD27_00805 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_00825 SM00641 Glycosyl hydrolases family 25 AMD27_00840 SM01091 Transporter associated domain AMD27_00860 SM00434 DNA Topoisomerase IV AMD27_00900 SM00382 ATPases associated with a variety of cellular activities AMD27_00910 SM00938 Nitrogen regulatory protein P-II AMD27_00980 SM00245 tail specific protease AMD27_00985 SM00382 ATPases associated with a variety of cellular activities AMD27_00985 SM00448 cheY-homologous receiver domain AMD27_00990 SM00091 PAS domain AMD27_00990 SM00387 Histidine kinase-like ATPases AMD27_00990 SM00388 His Kinase A (phosphoacceptor) domain AMD27_00995 SM00421 helix_turn_helix, Lux Regulon AMD27_00995 SM00448 cheY-homologous receiver domain AMD27_01030 SM00899 AMD27_01030 AMD27_01115 SM00448 cheY-homologous receiver domain AMD27_01115 SM00850 LytTr DNA-binding domain AMD27_01145 SM00528 Domain in histone-like proteins of HNS family AMD27_01165 SM00240 Forkhead associated domain AMD27_01215 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD27_01215 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD27_01220 SM00649 Ribosomal protein L11/L12 AMD27_01245 SM00663 RNA polymerase I subunit A N-terminus AMD27_01285 SM00387 Histidine kinase-like ATPases AMD27_01315 SM00267 diguanylate cyclase AMD27_01360 SM00465 GIY-YIG type nucleases (URI domain) AMD27_01410 SM00732 Likely ribonuclease with RNase H fold. AMD27_01435 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD27_01505 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_01575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD27_01575 SM00954 Region found in RelA / SpoT proteins AMD27_01580 SM01409 AMD27_01580 AMD27_01585 SM00072 Guanylate kinase homologues. AMD27_01875 SM00460 Transglutaminase/protease-like homologues AMD27_01910 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_01915 SM00363 S4 RNA-binding domain AMD27_01940 SM01060 AMD27_01940 AMD27_01955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD27_02015 SM01329 AMD27_02015 AMD27_02030 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_02035 SM00342 helix_turn_helix, arabinose operon control protein AMD27_02045 SM00870 AMD27_02045 AMD27_02060 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD27_02125 SM00988 UreE urease accessory protein, N-terminal domain AMD27_02140 SM00382 ATPases associated with a variety of cellular activities AMD27_02165 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD27_02165 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD27_02165 SM00493 AMD27_02165 AMD27_02185 SM00360 RNA recognition motif AMD27_02325 SM00671 Sel1-like repeats. AMD27_02340 SM00917 LeuA allosteric (dimerisation) domain AMD27_02345 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD27_02375 SM00382 ATPases associated with a variety of cellular activities AMD27_02375 SM00994 ClpX C4-type zinc finger AMD27_02375 SM01086 C-terminal, D2-small domain, of ClpB protein AMD27_02450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD27_02450 SM00245 tail specific protease AMD27_02455 SM00052 Putative diguanylate phosphodiesterase AMD27_02455 SM00267 diguanylate cyclase AMD27_02540 SM00327 von Willebrand factor (vWF) type A domain AMD27_02565 SM00422 helix_turn_helix, mercury resistance AMD27_02575 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD27_02575 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD27_02610 SM00073 Histidine Phosphotransfer domain AMD27_02610 SM00387 Histidine kinase-like ATPases AMD27_02610 SM00388 His Kinase A (phosphoacceptor) domain AMD27_02610 SM00448 cheY-homologous receiver domain AMD27_02630 SM00954 Region found in RelA / SpoT proteins AMD27_02645 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD27_02705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD27_02780 SM00873 B3/4 domain AMD27_02780 SM00874 tRNA synthetase B5 domain AMD27_02780 SM00896 Ferredoxin-fold anticodon binding domain AMD27_02785 SM00411 bacterial (prokaryotic) histone like domain AMD27_02795 SM00357 Cold shock protein domain AMD27_02795 SM00382 ATPases associated with a variety of cellular activities AMD27_02795 SM00959 Rho termination factor, N-terminal domain AMD27_02815 SM00977 TilS substrate C-terminal domain AMD27_02830 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD27_02830 SM00474 3'-5' exonuclease AMD27_02830 SM00475 5'-3' exonuclease AMD27_02830 SM00482 DNA polymerase A domain AMD27_02850 SM00382 ATPases associated with a variety of cellular activities AMD27_02880 SM00331 Sigma factor PP2C-like phosphatases AMD27_02950 SM00878 Biotin carboxylase C-terminal domain AMD27_02955 SM00960 Roadblock/LC7 domain AMD27_03005 SM00650 Ribosomal RNA adenine dimethylases AMD27_03040 SM00563 Phosphate acyltransferases AMD27_03045 SM00155 Phospholipase D. Active site motifs. AMD27_03110 SM00344 helix_turn_helix ASNC type AMD27_03130 SM00357 Cold shock protein domain AMD27_03135 SM00342 helix_turn_helix, arabinose operon control protein AMD27_03190 SM00849 Metallo-beta-lactamase superfamily AMD27_03200 SM00957 SecA DEAD-like domain AMD27_03200 SM00958 SecA preprotein cross-linking domain AMD27_03245 SM00267 diguanylate cyclase AMD27_03295 SM00382 ATPases associated with a variety of cellular activities AMD27_03310 SM00062 Bacterial periplasmic substrate-binding proteins AMD27_03475 SM00344 helix_turn_helix ASNC type AMD27_03485 SM01005 Alanine racemase, C-terminal domain AMD27_03510 SM00825 Beta-ketoacyl synthase AMD27_03530 SM00838 Elongation factor G C-terminus AMD27_03530 SM00889 Elongation factor G, domain IV AMD27_03570 SM00843 AMD27_03570 AMD27_03600 SM00563 Phosphate acyltransferases AMD27_03660 SM00382 ATPases associated with a variety of cellular activities AMD27_03665 SM00382 ATPases associated with a variety of cellular activities AMD27_03695 SM00382 ATPases associated with a variety of cellular activities AMD27_03695 SM01086 C-terminal, D2-small domain, of ClpB protein AMD27_03735 SM01004 Delta-aminolevulinic acid dehydratase AMD27_03795 SM00487 DEAD-like helicases superfamily AMD27_03915 SM01006 Siderophore biosynthesis protein domain AMD27_03935 SM00346 helix_turn_helix isocitrate lyase regulation AMD27_04015 SM00564 beta-propeller repeat AMD27_04055 SM00267 diguanylate cyclase AMD27_04085 SM01018 B12 binding domain AMD27_04125 SM00947 Carbonic anhydrase AMD27_04135 SM00382 ATPases associated with a variety of cellular activities AMD27_04220 SM00829 Enoylreductase AMD27_04255 SM00822 AMD27_04255 AMD27_04450 SM00450 Rhodanese Homology Domain AMD27_04475 SM01400 AMD27_04475 AMD27_04510 SM00028 Tetratricopeptide repeats AMD27_04520 SM00400 zinc finger AMD27_04520 SM00493 AMD27_04520 AMD27_04530 SM00363 S4 RNA-binding domain AMD27_04660 SM00861 Transketolase, pyrimidine binding domain AMD27_04680 SM00881 CoA binding domain AMD27_04725 SM00478 endonuclease III AMD27_04735 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD27_04765 SM00382 ATPases associated with a variety of cellular activities AMD27_04765 SM00464 Found in ATP-dependent protease La (LON) AMD27_04775 SM00422 helix_turn_helix, mercury resistance AMD27_04780 SM00746 metallochaperone-like domain AMD27_04805 SM00903 Flavin reductase like domain AMD27_04840 SM01011 Aminopeptidase P, N-terminal domain AMD27_04845 SM00387 Histidine kinase-like ATPases AMD27_04845 SM00388 His Kinase A (phosphoacceptor) domain AMD27_04850 SM00448 cheY-homologous receiver domain AMD27_04850 SM00862 Transcriptional regulatory protein, C terminal AMD27_04925 SM00479 AMD27_04925 AMD27_04930 SM00257 Lysin motif AMD27_04950 SM00382 ATPases associated with a variety of cellular activities AMD27_05020 SM00382 ATPases associated with a variety of cellular activities AMD27_05070 SM00849 Metallo-beta-lactamase superfamily AMD27_05140 SM00829 Enoylreductase AMD27_05185 SM00422 helix_turn_helix, mercury resistance AMD27_05210 SM00382 ATPases associated with a variety of cellular activities AMD27_05220 SM00448 cheY-homologous receiver domain AMD27_05220 SM00862 Transcriptional regulatory protein, C terminal AMD27_05225 SM00387 Histidine kinase-like ATPases AMD27_05225 SM00388 His Kinase A (phosphoacceptor) domain AMD27_05275 SM00830 Chorismate mutase type II AMD27_05405 SM00382 ATPases associated with a variety of cellular activities AMD27_05420 SM01118 AMD27_05420 AMD27_05490 SM00342 helix_turn_helix, arabinose operon control protein AMD27_05515 SM00487 DEAD-like helicases superfamily AMD27_05515 SM00490 helicase superfamily c-terminal domain AMD27_05520 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD27_05590 SM00382 ATPases associated with a variety of cellular activities AMD27_05660 SM00382 ATPases associated with a variety of cellular activities AMD27_05700 SM00421 helix_turn_helix, Lux Regulon AMD27_05725 SM01211 AMD27_05725 AMD27_05800 SM00382 ATPases associated with a variety of cellular activities AMD27_05850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD27_05895 SM00838 Elongation factor G C-terminus AMD27_05910 SM00358 Double-stranded RNA binding motif AMD27_05910 SM00535 Ribonuclease III family AMD27_05995 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_06055 SM00382 ATPases associated with a variety of cellular activities AMD27_06055 SM00487 DEAD-like helicases superfamily AMD27_06055 SM00490 helicase superfamily c-terminal domain AMD27_06055 SM00847 Helicase associated domain (HA2) Add an annotation AMD27_06065 SM00563 Phosphate acyltransferases AMD27_06085 SM00840 AMD27_06085 AMD27_06095 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD27_06115 SM00382 ATPases associated with a variety of cellular activities AMD27_06125 SM00382 ATPases associated with a variety of cellular activities AMD27_06230 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD27_06230 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD27_06405 SM00387 Histidine kinase-like ATPases AMD27_06405 SM00388 His Kinase A (phosphoacceptor) domain AMD27_06410 SM00448 cheY-homologous receiver domain AMD27_06410 SM00862 Transcriptional regulatory protein, C terminal AMD27_06445 SM00481 DNA polymerase alpha chain like domain AMD27_06450 SM00671 Sel1-like repeats. AMD27_06455 SM00870 AMD27_06455 AMD27_06485 SM00342 helix_turn_helix, arabinose operon control protein AMD27_06500 SM00267 diguanylate cyclase AMD27_06515 SM00487 DEAD-like helicases superfamily AMD27_06515 SM00490 helicase superfamily c-terminal domain AMD27_06535 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD27_06575 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD27_06685 SM01228 AMD27_06685 AMD27_06705 SM00460 Transglutaminase/protease-like homologues AMD27_06715 SM01034 Sensors of blue-light using FAD AMD27_06720 SM01005 Alanine racemase, C-terminal domain AMD27_07010 SM00060 Fibronectin type 3 domain AMD27_07025 SM00530 Helix-turn-helix XRE-family like proteins AMD27_07075 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD27_07080 SM01091 Transporter associated domain AMD27_07145 SM00822 AMD27_07145 AMD27_07175 SM00382 ATPases associated with a variety of cellular activities AMD27_07190 SM00226 Low molecular weight phosphatase family AMD27_07215 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD27_07350 SM00563 Phosphate acyltransferases AMD27_07360 SM00195 Dual specificity phosphatase, catalytic domain AMD27_07405 SM01324 AMD27_07405 AMD27_07430 SM00493 AMD27_07430 AMD27_07435 SM00474 3'-5' exonuclease AMD27_07450 SM00382 ATPases associated with a variety of cellular activities AMD27_07465 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD27_07500 SM00382 ATPases associated with a variety of cellular activities AMD27_07500 SM00962 SRP54-type protein, GTPase domain AMD27_07500 SM00963 SRP54-type protein, helical bundle domain AMD27_07560 SM01264 AMD27_07560 AMD27_07600 SM00882 Coenzyme A transferase AMD27_07605 SM00882 Coenzyme A transferase AMD27_07615 SM00878 Biotin carboxylase C-terminal domain AMD27_07665 SM00387 Histidine kinase-like ATPases AMD27_07665 SM00388 His Kinase A (phosphoacceptor) domain AMD27_07670 SM00448 cheY-homologous receiver domain AMD27_07670 SM00862 Transcriptional regulatory protein, C terminal AMD27_07705 SM01060 AMD27_07705 AMD27_07750 SM00448 cheY-homologous receiver domain AMD27_07750 SM01012 AMD27_07750 AMD27_07770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMD27_07780 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_07795 SM00852 Probable molybdopterin binding domain AMD27_07800 SM00852 Probable molybdopterin binding domain AMD27_07815 SM00382 ATPases associated with a variety of cellular activities AMD27_07830 SM00882 Coenzyme A transferase AMD27_07835 SM00882 Coenzyme A transferase AMD27_07875 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD27_07925 SM00829 Enoylreductase AMD27_07955 SM00226 Low molecular weight phosphatase family AMD27_07960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD27_08035 SM00382 ATPases associated with a variety of cellular activities AMD27_08045 SM00342 helix_turn_helix, arabinose operon control protein AMD27_08095 SM00052 Putative diguanylate phosphodiesterase AMD27_08095 SM00267 diguanylate cyclase AMD27_08110 SM00829 Enoylreductase AMD27_08115 SM00155 Phospholipase D. Active site motifs. AMD27_08140 SM00822 AMD27_08140 AMD27_08145 SM00855 Phosphoglycerate mutase family AMD27_08165 SM00318 Staphylococcal nuclease homologues AMD27_08170 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD27_08210 SM01040 BRO family, N-terminal domain AMD27_08220 SM00507 HNH nucleases AMD27_08235 SM00530 Helix-turn-helix XRE-family like proteins AMD27_08240 SM00894 Excalibur calcium-binding domain AMD27_08425 SM00507 HNH nucleases AMD27_08600 SM00878 Biotin carboxylase C-terminal domain AMD27_08610 SM00267 diguanylate cyclase AMD27_08680 SM00357 Cold shock protein domain AMD27_08715 SM00342 helix_turn_helix, arabinose operon control protein AMD27_08725 SM00411 bacterial (prokaryotic) histone like domain AMD27_08760 SM00271 DnaJ molecular chaperone homology domain AMD27_08775 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AMD27_08785 SM00487 DEAD-like helicases superfamily AMD27_08785 SM00490 helicase superfamily c-terminal domain AMD27_08785 SM00982 AMD27_08785 AMD27_08785 SM01058 CarD-like/TRCF domain AMD27_08830 SM00363 S4 RNA-binding domain AMD27_08835 SM00382 ATPases associated with a variety of cellular activities AMD27_08870 SM00935 Outer membrane protein (OmpH-like) AMD27_08880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD27_08910 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_08915 SM00091 PAS domain AMD27_08915 SM00387 Histidine kinase-like ATPases AMD27_08915 SM00388 His Kinase A (phosphoacceptor) domain AMD27_08920 SM00382 ATPases associated with a variety of cellular activities AMD27_08920 SM00448 cheY-homologous receiver domain AMD27_08960 SM00382 ATPases associated with a variety of cellular activities AMD27_08960 SM01086 C-terminal, D2-small domain, of ClpB protein AMD27_08975 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD27_09140 SM01192 AMD27_09140 AMD27_09140 SM01193 AMD27_09140 AMD27_09160 SM00671 Sel1-like repeats. AMD27_09220 SM00344 helix_turn_helix ASNC type AMD27_09250 SM00382 ATPases associated with a variety of cellular activities AMD27_09300 SM00829 Enoylreductase AMD27_09325 SM00867 YceI-like domain AMD27_09345 SM00861 Transketolase, pyrimidine binding domain AMD27_09350 SM00267 diguanylate cyclase AMD27_09410 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_09410 SM00876 Biotin and Thiamin Synthesis associated domain AMD27_09460 SM00563 Phosphate acyltransferases AMD27_09485 SM00344 helix_turn_helix ASNC type AMD27_09515 SM00382 ATPases associated with a variety of cellular activities AMD27_09515 SM00930 AMD27_09515 AMD27_09550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD27_09560 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD27_09570 SM00411 bacterial (prokaryotic) histone like domain AMD27_09575 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_09600 SM00986 Uracil DNA glycosylase superfamily AMD27_09600 SM00987 UreE urease accessory protein, C-terminal domain AMD27_09660 SM00382 ATPases associated with a variety of cellular activities AMD27_09675 SM00470 ParB-like nuclease domain AMD27_09720 SM00853 MutL C terminal dimerisation domain AMD27_09720 SM01340 AMD27_09720 AMD27_09830 SM00905 Dihydroneopterin aldolase AMD27_09845 SM00822 AMD27_09845 AMD27_09860 SM00937 AMD27_09860 AMD27_09900 SM00798 AICARFT/IMPCHase bienzyme AMD27_09900 SM00851 MGS-like domain AMD27_09905 SM01209 AMD27_09905 AMD27_09905 SM01210 AMD27_09905 AMD27_09920 SM00382 ATPases associated with a variety of cellular activities AMD27_09920 SM00930 AMD27_09920 AMD27_09950 SM00849 Metallo-beta-lactamase superfamily AMD27_09975 SM00220 Serine/Threonine protein kinases, catalytic domain AMD27_10085 SM00855 Phosphoglycerate mutase family AMD27_10105 SM00487 DEAD-like helicases superfamily AMD27_10105 SM00490 helicase superfamily c-terminal domain AMD27_10110 SM00357 Cold shock protein domain AMD27_10210 SM00981 AMD27_10210 AMD27_10220 SM00382 ATPases associated with a variety of cellular activities AMD27_10220 SM01086 C-terminal, D2-small domain, of ClpB protein AMD27_10230 SM00450 Rhodanese Homology Domain AMD27_10250 SM00100 Cyclic nucleotide-monophosphate binding domain AMD27_10250 SM00419 helix_turn_helix, cAMP Regulatory protein AMD27_10275 SM00788 Adenylosuccinate synthetase AMD27_10290 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD27_10295 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD27_10355 SM00903 Flavin reductase like domain AMD27_10425 SM00841 Elongation factor P, C-terminal AMD27_10425 SM01185 AMD27_10425 AMD27_10440 SM00052 Putative diguanylate phosphodiesterase AMD27_10485 SM00257 Lysin motif AMD27_10505 SM00936 Penicillin-binding protein 5, C-terminal domain AMD27_10575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD27_10580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD27_10585 SM00382 ATPases associated with a variety of cellular activities AMD27_10670 SM00479 AMD27_10670 AMD27_10695 SM00382 ATPases associated with a variety of cellular activities AMD27_10800 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_10835 SM00671 Sel1-like repeats. AMD27_10845 SM00996 S-adenosyl-L-homocysteine hydrolase AMD27_10845 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD27_10860 SM00052 Putative diguanylate phosphodiesterase AMD27_10860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD27_10860 SM00091 PAS domain AMD27_10860 SM00267 diguanylate cyclase AMD27_10865 SM00919 Malic enzyme, NAD binding domain AMD27_10865 SM01274 AMD27_10865 AMD27_10900 SM00062 Bacterial periplasmic substrate-binding proteins AMD27_10905 SM00062 Bacterial periplasmic substrate-binding proteins AMD27_10905 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AMD27_10910 SM00382 ATPases associated with a variety of cellular activities AMD27_11000 SM00912 haemagglutination activity domain AMD27_11040 SM00267 diguanylate cyclase AMD27_11050 SM00479 AMD27_11050 AMD27_11095 SM00434 DNA Topoisomerase IV AMD27_11105 SM00893 Electron transfer flavoprotein domain AMD27_11110 SM00893 Electron transfer flavoprotein domain AMD27_11120 SM00344 helix_turn_helix ASNC type AMD27_11170 SM00382 ATPases associated with a variety of cellular activities AMD27_11175 SM00978 AMD27_11175 AMD27_11185 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD27_11255 SM01230 AMD27_11255 AMD27_11285 SM00463 Small MutS-related domain AMD27_11500 SM00883 Chaperonin 10 Kd subunit AMD27_11510 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD27_11575 SM00327 von Willebrand factor (vWF) type A domain AMD27_11585 SM00382 ATPases associated with a variety of cellular activities AMD27_11595 SM01103 AMD27_11595 AMD27_11605 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD27_11610 SM00851 MGS-like domain AMD27_11610 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD27_11690 SM00244 prohibitin homologues AMD27_11705 SM00563 Phosphate acyltransferases AMD27_11720 SM01091 Transporter associated domain AMD27_11780 SM00563 Phosphate acyltransferases AMD27_11795 SM00244 prohibitin homologues AMD27_11810 SM00267 diguanylate cyclase AMD27_11860 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_11895 SM00845 GatB domain AMD27_11900 SM00901 AMD27_11900 AMD27_11905 SM00829 Enoylreductase AMD27_11965 SM01322 AMD27_11965 AMD27_12115 SM00073 Histidine Phosphotransfer domain AMD27_12115 SM00260 Two component signalling adaptor domain AMD27_12115 SM00387 Histidine kinase-like ATPases AMD27_12115 SM00448 cheY-homologous receiver domain AMD27_12115 SM01231 AMD27_12115 AMD27_12120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD27_12125 SM00260 Two component signalling adaptor domain AMD27_12130 SM00448 cheY-homologous receiver domain AMD27_12135 SM00448 cheY-homologous receiver domain AMD27_12305 SM00357 Cold shock protein domain AMD27_12350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMD27_12350 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD27_12355 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD27_12385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD27_12385 SM00387 Histidine kinase-like ATPases AMD27_12385 SM00388 His Kinase A (phosphoacceptor) domain AMD27_12390 SM00448 cheY-homologous receiver domain AMD27_12390 SM00862 Transcriptional regulatory protein, C terminal AMD27_12430 SM00823 Phosphopantetheine attachment site AMD27_12465 SM00257 Lysin motif AMD27_12475 SM00822 AMD27_12475 AMD27_12480 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD27_12580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD27_12580 SM00292 breast cancer carboxy-terminal domain AMD27_12580 SM00532 Ligase N family AMD27_12585 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD27_12595 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD27_12625 SM00382 ATPases associated with a variety of cellular activities AMD27_12625 SM00962 SRP54-type protein, GTPase domain AMD27_12625 SM00963 SRP54-type protein, helical bundle domain AMD27_12745 SM00671 Sel1-like repeats. AMD27_12760 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD27_12760 SM01232 AMD27_12760 AMD27_12900 SM00448 cheY-homologous receiver domain AMD27_12900 SM00862 Transcriptional regulatory protein, C terminal AMD27_12905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD27_12905 SM00387 Histidine kinase-like ATPases AMD27_12905 SM00388 His Kinase A (phosphoacceptor) domain AMD27_13015 SM00984 UDP binding domain AMD27_13040 SM00387 Histidine kinase-like ATPases AMD27_13040 SM00388 His Kinase A (phosphoacceptor) domain AMD27_13055 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD27_13065 SM00028 Tetratricopeptide repeats AMD27_13065 SM00671 Sel1-like repeats. AMD27_13070 SM00257 Lysin motif AMD27_13320 SM01323 AMD27_13320 AMD27_13345 SM00825 Beta-ketoacyl synthase AMD27_13350 SM00822 AMD27_13350 AMD27_13360 SM00825 Beta-ketoacyl synthase AMD27_13425 SM00563 Phosphate acyltransferases AMD27_13440 SM00564 beta-propeller repeat AMD27_13465 SM00028 Tetratricopeptide repeats AMD27_13475 SM00562 AMD27_13475 AMD27_13485 SM00014 Acid phosphatase homologues AMD27_13555 SM00382 ATPases associated with a variety of cellular activities AMD27_13565 SM00671 Sel1-like repeats. AMD27_13570 SM00257 Lysin motif AMD27_13595 SM00479 AMD27_13595 AMD27_13605 SM00450 Rhodanese Homology Domain AMD27_13640 SM00481 DNA polymerase alpha chain like domain AMD27_13665 SM00450 Rhodanese Homology Domain AMD27_13755 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD27_13790 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_13895 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_13895 SM00955 AMD27_13895 AMD27_13955 SM00662 RNA polymerases D AMD27_13960 SM00363 S4 RNA-binding domain AMD27_13960 SM01390 AMD27_13960 AMD27_14025 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD27_14030 SM01374 AMD27_14030 AMD27_14050 SM00322 K homology RNA-binding domain AMD27_14065 SM01382 AMD27_14065 AMD27_14065 SM01383 AMD27_14065 AMD27_14085 SM01403 AMD27_14085 AMD27_14140 SM00563 Phosphate acyltransferases AMD27_14150 SM00487 DEAD-like helicases superfamily AMD27_14150 SM00490 helicase superfamily c-terminal domain AMD27_14195 SM00382 ATPases associated with a variety of cellular activities AMD27_14200 SM00487 DEAD-like helicases superfamily AMD27_14200 SM00490 helicase superfamily c-terminal domain AMD27_14210 SM00861 Transketolase, pyrimidine binding domain AMD27_14255 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD27_14270 SM00382 ATPases associated with a variety of cellular activities AMD27_14285 SM00382 ATPases associated with a variety of cellular activities AMD27_14305 SM00382 ATPases associated with a variety of cellular activities AMD27_14365 SM00849 Metallo-beta-lactamase superfamily AMD27_14415 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD27_14415 SM01091 Transporter associated domain AMD27_14440 SM00487 DEAD-like helicases superfamily AMD27_14440 SM00490 helicase superfamily c-terminal domain AMD27_14455 SM00271 DnaJ molecular chaperone homology domain AMD27_14480 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_14480 SM00322 K homology RNA-binding domain AMD27_14485 SM01387 AMD27_14485 AMD27_14620 SM00965 Secretin and TonB N terminus short domain AMD27_14640 SM00842 Cell division protein FtsA AMD27_14715 SM00671 Sel1-like repeats. AMD27_14720 SM00382 ATPases associated with a variety of cellular activities AMD27_14730 SM00822 AMD27_14730 AMD27_14745 SM00316 Ribosomal protein S1-like RNA-binding domain AMD27_14745 SM00732 Likely ribonuclease with RNase H fold. AMD27_14750 SM00448 cheY-homologous receiver domain AMD27_14750 SM00862 Transcriptional regulatory protein, C terminal AMD27_14755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD27_14755 SM00387 Histidine kinase-like ATPases AMD27_14755 SM00388 His Kinase A (phosphoacceptor) domain AMD27_14805 SM00530 Helix-turn-helix XRE-family like proteins AMD27_14810 SM00474 3'-5' exonuclease AMD27_14835 SM00357 Cold shock protein domain AMD27_14865 SM00477 DNA/RNA non-specific endonuclease AMD27_14865 SM00892 DNA/RNA non-specific endonuclease AMD27_15055 SM00387 Histidine kinase-like ATPases AMD27_15055 SM00388 His Kinase A (phosphoacceptor) domain AMD27_15055 SM00448 cheY-homologous receiver domain AMD27_15065 SM00421 helix_turn_helix, Lux Regulon AMD27_15065 SM00448 cheY-homologous receiver domain AMD27_15145 SM00882 Coenzyme A transferase AMD27_15220 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD27_15225 SM00937 AMD27_15225 AMD27_15265 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD27_15265 SM01240 AMD27_15265 AMD27_15305 SM00864 Tubulin/FtsZ family, GTPase domain AMD27_15305 SM00865 Tubulin/FtsZ family, C-terminal domain AMD27_15310 SM00842 Cell division protein FtsA AMD27_15370 SM00267 diguanylate cyclase AMD27_15415 SM00382 ATPases associated with a variety of cellular activities AMD27_15440 SM00387 Histidine kinase-like ATPases AMD27_15440 SM00433 TopoisomeraseII AMD27_15545 SM00448 cheY-homologous receiver domain AMD27_15545 SM00862 Transcriptional regulatory protein, C terminal AMD27_15550 SM00387 Histidine kinase-like ATPases AMD27_15550 SM00388 His Kinase A (phosphoacceptor) domain AMD27_15560 SM00450 Rhodanese Homology Domain AMD27_15570 SM00248 ankyrin repeats AMD27_15575 SM01060 AMD27_15575 AMD27_15655 SM00382 ATPases associated with a variety of cellular activities AMD27_15690 SM00487 DEAD-like helicases superfamily AMD27_15695 SM00530 Helix-turn-helix XRE-family like proteins AMD27_15745 SM01130 AMD27_15745 AMD27_15760 SM00382 ATPases associated with a variety of cellular activities AMD27_15785 SM00478 endonuclease III AMD27_15785 SM00525 AMD27_15785 AMD27_15805 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD27_15850 SM00062 Bacterial periplasmic substrate-binding proteins AMD27_15855 SM00062 Bacterial periplasmic substrate-binding proteins AMD27_15870 SM00382 ATPases associated with a variety of cellular activities AMD27_15885 SM00904 Riboflavin kinase AMD27_15980 SM00382 ATPases associated with a variety of cellular activities AMD27_15980 SM01086 C-terminal, D2-small domain, of ClpB protein AMD27_16060 SM01001 AIR carboxylase AMD27_16075 SM01034 Sensors of blue-light using FAD AMD27_16165 SM01234 AMD27_16165 AMD27_16265 SM00528 Domain in histone-like proteins of HNS family AMD27_16315 SM00671 Sel1-like repeats. AMD27_16390 SM00671 Sel1-like repeats. AMD27_16395 SM00671 Sel1-like repeats. AMD27_16445 SM00491 AMD27_16445 AMD27_16555 SM00318 Staphylococcal nuclease homologues AMD27_16610 SM00671 Sel1-like repeats. AMD27_16670 SM00382 ATPases associated with a variety of cellular activities AMD27_16690 SM00477 DNA/RNA non-specific endonuclease AMD27_16690 SM00892 DNA/RNA non-specific endonuclease AMD27_16930 SM00491 AMD27_16930 AMD27_17480 SM00382 ATPases associated with a variety of cellular activities AMD27_17595 SM00671 Sel1-like repeats. AMD27_17740 SM00470 ParB-like nuclease domain AMD27_17795 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD27_17795 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD27_17795 SM00493 AMD27_17795 AMD27_17845 SM00855 Phosphoglycerate mutase family