AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Pfam PF03144 Elongation factor Tu domain 2 214 284 2.8E-11 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Pfam PF06421 GTP-binding protein LepA C-terminus 496 602 4.4E-50 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Pfam PF00009 Elongation factor Tu GTP binding domain 12 190 1.3E-51 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Gene3D G3DSA:3.40.50.300 8 194 3.7E-69 T 11-10-2018 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 PRINTS PR00315 GTP-binding elongation factor signature 15 28 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 SUPERFAMILY SSF54980 408 502 5.76E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Gene3D G3DSA:3.30.70.870 295 376 2.0E-34 T 11-10-2018 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 SUPERFAMILY SSF54980 301 379 1.62E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 SMART SM00838 407 492 0.0083 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 TIGRFAM TIGR01393 lepA: elongation factor 4 12 604 3.5E-289 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Gene3D G3DSA:2.40.30.10 195 293 7.5E-32 T 11-10-2018 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Pfam PF00679 Elongation factor G C-terminus 408 493 3.1E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 SUPERFAMILY SSF52540 6 235 4.07E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 181 2.9E-18 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Gene3D G3DSA:3.30.70.2570 488 562 6.9E-33 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Gene3D G3DSA:3.30.70.3380 377 487 2.5E-38 T 11-10-2018 AMD27_05895 f2009081e839b87a6fd43409ee9cce3a 605 Hamap MF_00071 Elongation factor 4 [lepA]. 1 605 292.5 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMD27_09875 ce64f122d4d3bdaa45d5f6f42d842cec 334 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 329 7.0E-126 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AMD27_09875 ce64f122d4d3bdaa45d5f6f42d842cec 334 SUPERFAMILY SSF51679 7 329 2.94E-82 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_09875 ce64f122d4d3bdaa45d5f6f42d842cec 334 Pfam PF00296 Luciferase-like monooxygenase 20 297 1.8E-39 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMD27_09875 ce64f122d4d3bdaa45d5f6f42d842cec 334 Gene3D G3DSA:3.20.20.30 4 332 1.7E-93 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Gene3D G3DSA:1.10.486.10 386 530 1.1E-65 T 11-10-2018 AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Gene3D G3DSA:1.10.10.160 109 193 1.7E-71 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Pfam PF13361 UvrD-like helicase C-terminal domain 281 600 4.6E-42 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 SUPERFAMILY SSF52540 6 608 2.66E-122 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 274 5.9E-55 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Gene3D G3DSA:3.40.50.300 10 275 1.7E-71 T 11-10-2018 AMD27_02180 58c7d56097fcfdeb988d30fa870ed889 662 Gene3D G3DSA:3.40.50.300 284 624 1.1E-65 T 11-10-2018 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Gene3D G3DSA:3.30.300.10 12 271 6.6E-174 T 11-10-2018 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 375 4.6E-67 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 386 57.222 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 SUPERFAMILY SSF55973 234 386 1.1E-68 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 102 5.0E-42 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 SUPERFAMILY SSF55973 111 233 3.69E-50 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Gene3D G3DSA:3.30.300.10 103 378 6.6E-174 T 11-10-2018 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Gene3D G3DSA:3.30.300.10 6 234 6.6E-174 T 11-10-2018 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 SUPERFAMILY SSF55973 6 110 5.1E-46 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 PIRSF PIRSF000497 1 387 2.5E-171 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 2.8E-44 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 384 9.5E-188 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_09360 5f00e98bcf0bb7781c288824de88c97e 388 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMD27_02285 8499248454485b1efeca5e16e2463dcb 269 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 259 9.9E-79 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMD27_02285 8499248454485b1efeca5e16e2463dcb 269 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 259 19.734 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMD27_02285 8499248454485b1efeca5e16e2463dcb 269 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 254 8.4E-78 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMD27_02285 8499248454485b1efeca5e16e2463dcb 269 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 136 148 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Hamap MF_00974 DNA primase [dnaG]. 2 632 25.726 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Pfam PF13662 Toprim domain 325 384 1.3E-15 T 11-10-2018 IPR006171 TOPRIM domain AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Pfam PF08275 DNA primase catalytic core, N-terminal domain 193 313 1.4E-34 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Gene3D G3DSA:3.90.580.10 1 101 8.9E-37 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 SUPERFAMILY SSF57783 1 97 5.1E-33 T 11-10-2018 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 SMART SM00400 34 88 4.0E-29 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 SUPERFAMILY SSF56731 183 483 1.11E-88 T 11-10-2018 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Gene3D G3DSA:3.40.1360.10 304 427 7.3E-36 T 11-10-2018 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Pfam PF01807 CHC2 zinc finger 4 98 4.6E-38 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 SMART SM00493 321 391 5.7E-13 T 11-10-2018 IPR006171 TOPRIM domain AMD27_04520 0605e8c24e6d495828ad9cb4963fec12 642 Gene3D G3DSA:3.90.980.10 182 303 3.2E-34 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AMD27_08750 756ed9c2a134a88fed21362da25d2311 128 Gene3D G3DSA:3.90.1010.10 1 128 6.5E-58 T 11-10-2018 AMD27_08750 756ed9c2a134a88fed21362da25d2311 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.0E-67 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMD27_08750 756ed9c2a134a88fed21362da25d2311 128 SUPERFAMILY SSF82649 1 125 1.23E-48 T 11-10-2018 AMD27_08750 756ed9c2a134a88fed21362da25d2311 128 Pfam PF01592 NifU-like N terminal domain 2 127 1.6E-56 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 PIRSF PIRSF004491 2 332 1.9E-107 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 Gene3D G3DSA:2.40.30.30 182 331 1.0E-24 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 SUPERFAMILY SSF82114 170 326 8.28E-32 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 Pfam PF01687 Riboflavin kinase 180 321 7.0E-26 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 321 1.9E-70 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 SUPERFAMILY SSF52374 18 171 4.22E-31 T 11-10-2018 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 SMART SM00904 179 326 3.2E-40 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 19 71 5.2E-8 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 Gene3D G3DSA:3.40.50.620 6 181 2.6E-57 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_15885 29a2c7fcccfc3232bf288717f660e383 333 Pfam PF06574 FAD synthetase 17 162 4.8E-47 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 1.2E-5 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 Pfam PF00578 AhpC/TSA family 6 132 2.7E-34 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 SUPERFAMILY SSF52833 1 186 8.26E-58 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 Gene3D G3DSA:3.40.30.10 1 186 6.1E-63 T 11-10-2018 AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 4.2E-104 T 11-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMD27_14935 5aeec2c78a77fbb69149a87c122ce75d 187 PIRSF PIRSF000239 1 187 6.2E-54 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_03885 2e81d19708a44b8316ed20abb45d8fc5 468 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 340 8.9E-108 T 11-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AMD27_03885 2e81d19708a44b8316ed20abb45d8fc5 468 SUPERFAMILY SSF51905 2 233 3.51E-15 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03885 2e81d19708a44b8316ed20abb45d8fc5 468 Gene3D G3DSA:3.50.50.60 1 422 6.1E-111 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_11820 1dc60d164eb09a4689f6f98b0cf5ae04 459 Gene3D G3DSA:1.20.1740.10 8 455 8.6E-66 T 11-10-2018 AMD27_11820 1dc60d164eb09a4689f6f98b0cf5ae04 459 PIRSF PIRSF006060 2 459 3.5E-80 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_11820 1dc60d164eb09a4689f6f98b0cf5ae04 459 Pfam PF00324 Amino acid permease 16 420 1.5E-110 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_11820 1dc60d164eb09a4689f6f98b0cf5ae04 459 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Gene3D G3DSA:3.30.1360.30 275 423 1.3E-197 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 3.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 3.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 3.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 3.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 SUPERFAMILY SSF55261 293 422 5.72E-43 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 SUPERFAMILY SSF55681 113 586 3.78E-103 T 11-10-2018 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Pfam PF01336 OB-fold nucleic acid binding domain 19 103 3.6E-18 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 5.0E-242 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.6E-109 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 SUPERFAMILY SSF50249 2 106 4.95E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Gene3D G3DSA:2.40.50.140 1 107 7.9E-34 T 11-10-2018 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Gene3D G3DSA:3.30.930.10 120 582 1.3E-197 T 11-10-2018 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.463 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMD27_12965 0d58ffc407de66fa392938ea74aa7368 594 Pfam PF02938 GAD domain 311 409 6.1E-29 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 Gene3D G3DSA:3.30.1330.60 70 183 3.6E-40 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 SUPERFAMILY SSF103088 69 180 2.35E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 Pfam PF00691 OmpA family 82 176 2.0E-22 T 11-10-2018 IPR006665 OmpA-like domain AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 80 182 5.5E-43 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 182 29.01 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 ProSitePatterns PS01068 OmpA-like domain. 114 158 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 PRINTS PR01021 OMPA domain signature 112 127 2.2E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 PRINTS PR01021 OMPA domain signature 82 104 2.2E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_10625 5e674cb6ae0727a6244fd166a4d02a27 190 PRINTS PR01021 OMPA domain signature 127 143 2.2E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 696 831 3.8E-32 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Gene3D G3DSA:3.55.50.10 111 221 1.9E-42 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Gene3D G3DSA:2.30.110.50 32 378 1.9E-42 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 SUPERFAMILY SSF69255 441 532 3.14E-20 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 SUPERFAMILY SSF69279 26 216 5.7E-38 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Pfam PF05954 Phage late control gene D protein (GPD) 43 385 1.6E-61 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 588 1.3E-46 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Gene3D G3DSA:2.40.50.230 431 538 5.1E-27 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Gene3D G3DSA:3.30.1920.30 254 336 1.9E-42 T 11-10-2018 AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 561 668 1.0E-30 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_08630 b64f14a8957e08a48b842b8bc54e1c7a 913 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 28 587 2.3E-59 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 6 137 7.7E-45 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 Gene3D G3DSA:3.10.420.10 1 151 2.0E-49 T 11-10-2018 IPR035958 SecB-like superfamily AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 2.3E-31 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 2.3E-31 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 2.3E-31 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 2.3E-31 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 SUPERFAMILY SSF54611 2 141 6.1E-44 T 11-10-2018 IPR035958 SecB-like superfamily AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 Pfam PF02556 Preprotein translocase subunit SecB 4 142 2.6E-48 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_13615 34fd1e6cbc85d5da7ea952a57a61b7d8 152 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 30.34 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMD27_08090 60b7c232d62a8f6468242c02d8482afe 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 18 351 4.6E-124 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMD27_08090 60b7c232d62a8f6468242c02d8482afe 357 Gene3D G3DSA:3.20.20.70 10 352 1.0E-133 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_08090 60b7c232d62a8f6468242c02d8482afe 357 PIRSF PIRSF001361 3 355 1.6E-136 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMD27_08090 60b7c232d62a8f6468242c02d8482afe 357 Pfam PF00793 DAHP synthetase I family 48 340 2.3E-75 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_08090 60b7c232d62a8f6468242c02d8482afe 357 SUPERFAMILY SSF51569 20 348 1.57E-110 T 11-10-2018 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Gene3D G3DSA:3.20.19.10 678 917 1.1E-108 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 ProSitePatterns PS00450 Aconitase family signature 1. 452 468 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 SUPERFAMILY SSF53732 7 651 6.02E-220 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 SUPERFAMILY SSF52016 654 915 2.55E-89 T 11-10-2018 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 ProSitePatterns PS01244 Aconitase family signature 2. 518 531 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Pfam PF00330 Aconitase family (aconitate hydratase) 72 587 8.0E-179 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Gene3D G3DSA:3.30.499.20 9 375 5.1E-160 T 11-10-2018 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Gene3D G3DSA:1.10.1440.20 617 675 3.7E-19 T 11-10-2018 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Pfam PF00694 Aconitase C-terminal domain 716 842 6.4E-49 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 Gene3D G3DSA:3.30.499.10 376 615 9.0E-95 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 456 467 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 375 389 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 518 531 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 296 309 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 149 162 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 206 219 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 220 235 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 282 295 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 PRINTS PR00415 Aconitase family signature 173 181 1.1E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02480 d0a8042b0f51deaf54366f25717fc37b 918 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 23 916 0.0 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SMART SM00958 228 355 2.9E-72 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Pfam PF01043 SecA preprotein cross-linking domain 232 355 2.0E-36 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Gene3D G3DSA:3.40.50.300 414 618 6.5E-84 T 11-10-2018 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Gene3D G3DSA:1.10.3060.10 619 829 6.6E-73 T 11-10-2018 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SMART SM00957 6 399 2.1E-288 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Pfam PF02810 SEC-C motif 890 908 6.5E-10 T 11-10-2018 IPR004027 SEC-C motif AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 830 19.56 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SUPERFAMILY SSF81886 618 898 4.58E-78 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SUPERFAMILY SSF81767 227 365 3.92E-40 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Gene3D G3DSA:3.90.1440.10 229 365 2.8E-169 T 11-10-2018 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SUPERFAMILY SSF52540 413 616 9.48E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 117 127 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 170 190 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 336 358 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 373 390 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 410 423 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 63 87 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 PRINTS PR00906 SecA protein signature 101 115 3.0E-67 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 ProSitePatterns PS01312 SecA family signature. 498 513 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 815 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Pfam PF07516 SecA Wing and Scaffold domain 615 825 6.7E-66 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Gene3D G3DSA:3.40.50.300 22 412 2.8E-169 T 11-10-2018 AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 SUPERFAMILY SSF52540 6 412 5.11E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03200 cab45217cf385cc8f5ac67121241105e 909 Pfam PF07517 SecA DEAD-like domain 8 399 7.2E-128 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Gene3D G3DSA:3.40.50.880 11 203 3.0E-52 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Pfam PF00117 Glutamine amidotransferase class-I 14 195 4.0E-38 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 522 6.7E-145 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 SUPERFAMILY SSF52317 8 234 3.85E-57 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Pfam PF00958 GMP synthase C terminal domain 430 521 5.5E-40 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Gene3D G3DSA:3.30.300.10 403 522 1.1E-48 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 12 201 9.1E-78 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Pfam PF02540 NAD synthase 219 302 1.4E-8 T 11-10-2018 IPR022310 NAD/GMP synthase AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 SUPERFAMILY SSF52402 194 417 5.73E-58 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 56 65 3.5E-7 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 83 94 3.5E-7 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 3.5E-7 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 53 67 2.7E-5 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 83 99 2.7E-5 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 12 26 2.7E-5 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 9 522 54.986 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 Gene3D G3DSA:3.40.50.620 205 402 1.6E-75 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00097 Anthranilate synthase component II signature 56 65 5.8E-6 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00097 Anthranilate synthase component II signature 83 94 5.8E-6 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 PRINTS PR00097 Anthranilate synthase component II signature 174 187 5.8E-6 T 11-10-2018 AMD27_00495 060c7e03ecc6acdca1a89b1bda68afb2 522 SUPERFAMILY SSF54810 402 522 1.57E-47 T 11-10-2018 AMD27_05815 03d1a4f5fe78f839713f8892798e440b 201 Pfam PF06821 Serine hydrolase 4 178 4.5E-54 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMD27_05815 03d1a4f5fe78f839713f8892798e440b 201 SUPERFAMILY SSF53474 4 179 6.08E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05815 03d1a4f5fe78f839713f8892798e440b 201 Gene3D G3DSA:3.40.50.1820 2 183 8.1E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 Gene3D G3DSA:1.20.200.10 148 415 9.4E-106 T 11-10-2018 AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 Pfam PF00206 Lyase 19 350 2.8E-86 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 Gene3D G3DSA:1.10.275.10 7 147 6.7E-52 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 1.5E-27 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 PRINTS PR00149 Fumarate lyase superfamily signature 325 341 1.5E-27 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 PRINTS PR00149 Fumarate lyase superfamily signature 279 306 1.5E-27 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 PRINTS PR00149 Fumarate lyase superfamily signature 188 206 1.5E-27 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 ProSitePatterns PS00163 Fumarate lyases signature. 325 334 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 Pfam PF10415 Fumarase C C-terminus 416 468 9.3E-16 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 SUPERFAMILY SSF48557 7 462 1.88E-131 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 10 470 1.8E-206 T 11-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 AMD27_09210 997b4cd1b99810d9d570e24e7473cae6 485 Gene3D G3DSA:1.10.40.30 416 465 1.8E-20 T 11-10-2018 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 Gene3D G3DSA:1.10.287.130 133 244 1.1E-10 T 11-10-2018 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 SMART SM00388 178 246 3.1E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 294 403 3.6E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 SUPERFAMILY SSF55874 236 406 2.36E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 402 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 383 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 344 1.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 Gene3D G3DSA:3.30.565.10 253 410 2.1E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 SUPERFAMILY SSF47384 163 247 1.96E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_13040 8e235e40d71b651bc6369dada6bd97a7 420 SMART SM00387 291 405 8.9E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_11665 a53564c2e2a758876d4d27b52aebd5be 499 Gene3D G3DSA:1.20.1530.20 2 421 1.0E-7 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_11665 a53564c2e2a758876d4d27b52aebd5be 499 Pfam PF00999 Sodium/hydrogen exchanger family 12 417 9.5E-37 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 SMART SM00382 140 331 3.2E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 SUPERFAMILY SSF50615 2 73 3.66E-26 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 4.9E-253 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 SUPERFAMILY SSF47917 349 463 6.8E-53 T 11-10-2018 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Gene3D G3DSA:2.40.10.170 1 73 1.4E-31 T 11-10-2018 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Gene3D G3DSA:3.40.50.300 74 348 7.2E-112 T 11-10-2018 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Gene3D G3DSA:1.10.1140.10 349 464 4.4E-57 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 7.4E-21 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.5E-62 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.873 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMD27_00655 e61dda869bbffee50495214bc1c91ca9 464 SUPERFAMILY SSF52540 75 352 4.44E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12805 7a4171afa1bf248ecaa235ad02db7d67 177 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 5.2E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_12805 7a4171afa1bf248ecaa235ad02db7d67 177 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 1.7E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_12805 7a4171afa1bf248ecaa235ad02db7d67 177 Gene3D G3DSA:3.30.700.10 10 154 1.8E-15 T 11-10-2018 AMD27_12805 7a4171afa1bf248ecaa235ad02db7d67 177 Pfam PF12019 Type II transport protein GspH 51 166 4.6E-10 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 AMD27_12805 7a4171afa1bf248ecaa235ad02db7d67 177 SUPERFAMILY SSF54523 10 156 4.24E-20 T 11-10-2018 AMD27_00135 d8073ee64fba3729d90353b19d795c5b 483 Pfam PF00171 Aldehyde dehydrogenase family 28 475 2.8E-128 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_00135 d8073ee64fba3729d90353b19d795c5b 483 SUPERFAMILY SSF53720 13 478 3.14E-120 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_00135 d8073ee64fba3729d90353b19d795c5b 483 Gene3D G3DSA:3.40.309.10 260 449 1.2E-137 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_00135 d8073ee64fba3729d90353b19d795c5b 483 Gene3D G3DSA:3.40.605.10 36 469 1.2E-137 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_00135 d8073ee64fba3729d90353b19d795c5b 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 5.7E-43 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 5.7E-43 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 5.7E-43 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 5.7E-43 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 142 3.2E-10 T 11-10-2018 IPR004176 Clp, N-terminal AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 63 4.2E-4 T 11-10-2018 IPR004176 Clp, N-terminal AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 844 1.3E-24 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Gene3D G3DSA:3.40.50.300 548 762 3.8E-88 T 11-10-2018 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 629 647 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Gene3D G3DSA:3.40.50.300 155 344 4.8E-74 T 11-10-2018 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 757 3.2E-56 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Gene3D G3DSA:1.10.8.60 764 858 5.2E-27 T 11-10-2018 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SUPERFAMILY SSF52540 157 543 4.51E-97 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Gene3D G3DSA:3.40.50.300 345 542 1.3E-64 T 11-10-2018 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 316 7.3E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SMART SM00382 195 340 2.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SMART SM00382 595 745 5.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SMART SM01086 764 853 8.6E-35 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SUPERFAMILY SSF81923 4 153 8.73E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 291 303 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 Gene3D G3DSA:1.10.1780.10 1 145 3.2E-26 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_10220 734566c1ff84e7ce947b72abfdeb724f 859 SUPERFAMILY SSF52540 544 850 1.44E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 SUPERFAMILY SSF55785 56 149 5.33E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 SUPERFAMILY SSF55785 215 314 5.14E-11 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 318 470 2.5E-35 T 11-10-2018 IPR000160 GGDEF domain AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 SUPERFAMILY SSF55073 327 470 4.97E-32 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 Pfam PF00990 Diguanylate cyclase, GGDEF domain 323 470 3.2E-34 T 11-10-2018 IPR000160 GGDEF domain AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 Gene3D G3DSA:3.30.70.270 314 475 2.0E-39 T 11-10-2018 AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 Gene3D G3DSA:3.30.450.20 210 313 8.3E-9 T 11-10-2018 AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 Pfam PF13426 PAS domain 218 309 0.0031 T 11-10-2018 IPR000014 PAS domain AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 Pfam PF13426 PAS domain 57 149 4.3E-4 T 11-10-2018 IPR000014 PAS domain AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 SMART SM00267 311 474 4.5E-37 T 11-10-2018 IPR000160 GGDEF domain AMD27_06500 63b03a843d91b484ef5a6be26250ed11 486 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 199 316 1.1E-5 T 11-10-2018 IPR000014 PAS domain AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 SMART SM00433 49 817 5.2E-263 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Gene3D G3DSA:3.10.20.690 606 703 5.3E-6 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 186 5.8E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Gene3D G3DSA:3.40.50.670 413 601 1.7E-72 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 519 536 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 501 517 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 756 772 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 434 448 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 282 295 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 539 551 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 49 64 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 84 97 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR00418 DNA topoisomerase II family signature 127 141 1.8E-71 T 11-10-2018 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Gene3D G3DSA:3.30.230.10 233 412 3.4E-71 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 SUPERFAMILY SSF55874 19 231 1.7E-70 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Pfam PF01751 Toprim domain 433 545 2.9E-17 T 11-10-2018 IPR006171 TOPRIM domain AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 19 819 1.9E-297 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 SUPERFAMILY SSF54211 234 405 7.59E-58 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Pfam PF00204 DNA gyrase B 234 404 6.7E-61 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 ProSitePatterns PS00177 DNA topoisomerase II signature. 436 444 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 SMART SM00387 45 189 1.7E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 SUPERFAMILY SSF56719 408 818 8.63E-87 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 753 813 4.7E-30 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Gene3D G3DSA:3.40.50.670 713 822 1.3E-26 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 16 823 100.051 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 256 274 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 388 408 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 19 29 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 326 342 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 194 209 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 777 789 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 484 493 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 209 222 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 233 255 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 374 388 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 PRINTS PR01159 DNA gyrase subunit B signature 793 809 1.7E-77 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_00020 1766d7a98a3b01a8b9bb54077e41de3e 823 Gene3D G3DSA:3.30.565.10 15 232 2.0E-88 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_00095 f05dca7bc2565efab8c11c34422566f7 356 Pfam PF07859 alpha/beta hydrolase fold 123 328 3.0E-64 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMD27_00095 f05dca7bc2565efab8c11c34422566f7 356 Gene3D G3DSA:3.40.50.1820 48 351 1.1E-72 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_00095 f05dca7bc2565efab8c11c34422566f7 356 SUPERFAMILY SSF53474 88 339 7.79E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_08295 ac11b85c2e88e4902c3e612d3b68ba4c 929 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 122 194 9.5E-19 T 11-10-2018 IPR013491 Caudovirus, tape measure, N-terminal AMD27_08295 ac11b85c2e88e4902c3e612d3b68ba4c 929 SUPERFAMILY SSF58104 104 266 5.62E-5 T 11-10-2018 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 Pfam PF00762 Ferrochelatase 7 325 1.0E-96 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 Gene3D G3DSA:3.40.50.1400 7 327 6.3E-89 T 11-10-2018 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 ProSitePatterns PS00534 Ferrochelatase signature. 196 215 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 Gene3D G3DSA:3.40.50.1400 170 308 6.3E-89 T 11-10-2018 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 TIGRFAM TIGR00109 hemH: ferrochelatase 4 326 1.8E-84 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 Hamap MF_00323 Ferrochelatase [hemH]. 6 327 33.367 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMD27_14370 db0c60908a8c7701c59039be8cad2796 339 SUPERFAMILY SSF53800 5 330 4.21E-89 T 11-10-2018 AMD27_01295 a2d09bf5c08b66b19c24747ac3208911 80 Pfam PF10439 Bacteriocin class II with double-glycine leader peptide 35 68 1.8E-6 T 11-10-2018 IPR019493 Bacteriocin, class IIb, lactacin-related GO:0042742 AMD27_08200 98c8b2d2749e4336d9c708a1c08dec16 335 Gene3D G3DSA:3.40.50.720 2 272 4.1E-85 T 11-10-2018 AMD27_08200 98c8b2d2749e4336d9c708a1c08dec16 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 245 3.2E-38 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMD27_08200 98c8b2d2749e4336d9c708a1c08dec16 335 SUPERFAMILY SSF51735 2 329 8.39E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08200 98c8b2d2749e4336d9c708a1c08dec16 335 Gene3D G3DSA:3.90.25.10 193 327 4.1E-85 T 11-10-2018 AMD27_12930 3d75bd1cbf02c4af35689f043377cebb 165 Pfam PF06146 Phosphate-starvation-inducible E 58 125 2.1E-17 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like AMD27_12930 3d75bd1cbf02c4af35689f043377cebb 165 PIRSF PIRSF029598 1 144 2.6E-36 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 7.0E-92 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 Gene3D G3DSA:3.10.310.10 4 272 1.4E-107 T 11-10-2018 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 SUPERFAMILY SSF54506 3 276 1.67E-55 T 11-10-2018 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 Gene3D G3DSA:3.10.310.10 117 263 1.4E-107 T 11-10-2018 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 Pfam PF01678 Diaminopimelate epimerase 5 125 4.9E-31 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 Pfam PF01678 Diaminopimelate epimerase 155 266 8.7E-27 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMD27_11140 a71675f409d4b87a8fe2aef87d6d6eb0 283 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 38.473 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMD27_02590 dab820ac18804257d32570a4311b5d72 133 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 21 126 24.615 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMD27_02590 dab820ac18804257d32570a4311b5d72 133 Pfam PF02410 Ribosomal silencing factor during starvation 31 125 3.2E-26 T 11-10-2018 AMD27_02590 dab820ac18804257d32570a4311b5d72 133 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 29 125 1.3E-35 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMD27_02590 dab820ac18804257d32570a4311b5d72 133 Gene3D G3DSA:3.30.460.10 22 133 1.4E-36 T 11-10-2018 AMD27_02590 dab820ac18804257d32570a4311b5d72 133 SUPERFAMILY SSF81301 24 127 9.16E-36 T 11-10-2018 AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 SUPERFAMILY SSF103473 8 435 5.1E-91 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 Gene3D G3DSA:1.20.1250.20 12 438 4.0E-96 T 11-10-2018 AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 320 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_00855 25ad74872542c23c3cbf86ee73fa721f 439 Pfam PF00083 Sugar (and other) transporter 53 436 3.3E-47 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_04010 48901ffddb84293ac400506420b4ce34 413 Pfam PF04966 Carbohydrate-selective porin, OprB family 75 413 9.1E-89 T 11-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 AMD27_04010 48901ffddb84293ac400506420b4ce34 413 Gene3D G3DSA:2.40.160.180 30 413 1.7E-122 T 11-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 Gene3D G3DSA:3.40.50.300 26 267 8.4E-85 T 11-10-2018 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 Pfam PF00154 recA bacterial DNA recombination protein 7 268 1.0E-147 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 SUPERFAMILY SSF54752 269 324 1.22E-18 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 4.8E-170 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 SMART SM00382 57 228 6.5E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 210 238 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 93 122 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 165 194 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 127 156 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 297 314 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 PRINTS PR00142 RecA protein signature 243 272 2.3E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 Gene3D G3DSA:3.30.250.10 269 327 6.7E-23 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 ProSitePatterns PS00321 recA signature. 213 221 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 Hamap MF_00268 Protein RecA [recA]. 5 329 51.446 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMD27_08835 eec2a1e8052ccb1c91b6891e32a8a27a 346 SUPERFAMILY SSF52540 4 267 1.51E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 SMART SM01060 41 429 1.2E-267 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 SUPERFAMILY SSF52317 554 669 4.4E-11 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 371 379 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 Pfam PF06628 Catalase-related immune-responsive 458 523 6.7E-18 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PIRSF PIRSF038927 3 705 0.0 T 11-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 Gene3D G3DSA:1.20.1370.20 456 555 3.1E-34 T 11-10-2018 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 Gene3D G3DSA:3.40.50.880 556 707 2.0E-25 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 SUPERFAMILY SSF56634 19 533 1.44E-219 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 Pfam PF00199 Catalase 41 426 6.3E-178 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 Gene3D G3DSA:2.40.180.10 1 453 6.1E-213 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 157 175 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 138 155 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 117 135 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 358 384 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 54 77 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_07705 5ad4baed30768211faee2f13b2450a69 707 PRINTS PR00067 Catalase signature 326 353 2.1E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Pfam PF00206 Lyase 11 341 2.0E-114 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 89.823 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Gene3D G3DSA:1.20.200.10 138 405 3.0E-116 T 11-10-2018 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Gene3D G3DSA:1.10.275.10 4 137 6.5E-58 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 332 7.6E-5 T 11-10-2018 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 7.6E-5 T 11-10-2018 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 2.4E-34 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 2.4E-34 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.4E-34 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 2.4E-34 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Pfam PF10415 Fumarase C C-terminus 407 459 5.1E-25 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 SUPERFAMILY SSF48557 3 460 8.39E-159 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 Gene3D G3DSA:1.10.40.30 406 463 2.6E-25 T 11-10-2018 AMD27_08195 5e0744a2f69dd3c847a21abcd37f52c7 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 1.6E-227 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 607 1.5E-281 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Pfam PF00009 Elongation factor Tu GTP binding domain 6 202 1.9E-50 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Gene3D G3DSA:2.40.50.250 491 607 1.0E-129 T 11-10-2018 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Gene3D G3DSA:3.30.70.240 397 490 1.0E-129 T 11-10-2018 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 SUPERFAMILY SSF50447 162 307 2.7E-32 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Gene3D G3DSA:2.40.30.10 207 307 1.7E-36 T 11-10-2018 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Pfam PF03144 Elongation factor Tu domain 2 227 297 1.7E-9 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Gene3D G3DSA:3.30.70.870 314 598 1.0E-129 T 11-10-2018 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 SUPERFAMILY SSF54980 406 521 1.25E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 147 6.4E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 SUPERFAMILY SSF52540 4 227 3.68E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 SUPERFAMILY SSF54980 310 395 2.99E-15 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Pfam PF00679 Elongation factor G C-terminus 405 485 3.3E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_12775 800ec0c79c8127653532c2d5dda9d1d3 611 Gene3D G3DSA:3.40.50.300 4 206 1.2E-61 T 11-10-2018 AMD27_05615 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_05615 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_01930 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_01930 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_07690 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_07690 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_12680 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_12680 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_17235 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_17235 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_05450 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_05450 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_04870 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_04870 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_09120 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_09120 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_03830 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_03830 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_10975 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_10975 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_03095 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_03095 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_03710 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_03710 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_04370 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_04370 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_15710 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_15710 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_03775 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_03775 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_10685 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_10685 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_15505 4ad6f2aa10091753767f0b879d4af489 96 Pfam PF13358 DDE superfamily endonuclease 5 76 6.4E-20 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_15505 4ad6f2aa10091753767f0b879d4af489 96 Gene3D G3DSA:3.30.420.470 4 95 1.6E-14 T 11-10-2018 AMD27_15220 9748da06efac213613220848a5ca89c6 100 Pfam PF12840 Helix-turn-helix domain 6 74 5.8E-12 T 11-10-2018 AMD27_15220 9748da06efac213613220848a5ca89c6 100 Gene3D G3DSA:1.10.10.10 1 99 6.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_15220 9748da06efac213613220848a5ca89c6 100 SMART SM00418 5 93 1.5E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_15220 9748da06efac213613220848a5ca89c6 100 SUPERFAMILY SSF46785 4 97 8.18E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Gene3D G3DSA:2.30.30.30 118 196 9.4E-31 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 249 1.7E-53 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Gene3D G3DSA:2.40.50.140 1 114 2.1E-49 T 11-10-2018 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 SUPERFAMILY SSF50104 126 269 5.11E-57 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Gene3D G3DSA:4.10.950.10 197 273 9.0E-34 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 SMART SM01383 42 118 8.8E-47 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.6E-125 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 45.39 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 SMART SM01382 124 251 3.0E-84 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 PIRSF PIRSF002158 10 274 3.8E-102 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 SUPERFAMILY SSF50249 3 124 2.47E-49 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14065 fe871a51072e92d99d06aafb06d387ab 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.8E-34 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 Pfam PF03486 HI0933-like protein 8 394 4.3E-88 T 11-10-2018 AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 Gene3D G3DSA:3.50.50.60 9 392 7.1E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 SUPERFAMILY SSF51905 5 398 9.08E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 9 393 3.2E-82 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 30 400 2.3E-160 T 11-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 Gene3D G3DSA:1.10.8.260 272 325 7.1E-64 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 SUPERFAMILY SSF160996 205 342 3.27E-17 T 11-10-2018 AMD27_14345 f7b39a679e39ca35940beba75f5fd59c 403 Gene3D G3DSA:2.40.30.10 193 342 7.1E-64 T 11-10-2018 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 Gene3D G3DSA:3.30.160.20 1 72 6.5E-29 T 11-10-2018 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 SUPERFAMILY SSF54211 78 157 3.79E-26 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 161 5.7E-64 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 Gene3D G3DSA:3.30.230.10 73 165 3.0E-35 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 4.4E-29 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 162 33.728 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 SUPERFAMILY SSF54768 7 75 1.57E-22 T 11-10-2018 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 73 4.4E-27 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMD27_13995 07f12f5756e7b1cb5d7722d8ed0c6a63 165 ProSitePatterns PS00585 Ribosomal protein S5 signature. 27 59 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 6.0E-95 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 491 6.0E-29 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 338 350 6.9E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 6.9E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 314 327 6.9E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 286 300 6.9E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 Gene3D G3DSA:3.40.50.300 171 494 6.1E-56 T 11-10-2018 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 491 6.6E-190 T 11-10-2018 IPR004482 Mg chelatase-related protein AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 SUPERFAMILY SSF54211 11 169 1.52E-31 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.2E-43 T 11-10-2018 AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 SMART SM00382 210 389 7.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 SUPERFAMILY SSF52540 188 493 1.76E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00900 43a5466bf27887fbbb0b23f39fc7d25a 495 Gene3D G3DSA:3.30.230.10 12 170 3.8E-7 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_14000 34f4dc63768c3d07ee28b01c0c057760 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 9.3E-41 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14000 34f4dc63768c3d07ee28b01c0c057760 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 6.3E-40 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14000 34f4dc63768c3d07ee28b01c0c057760 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 25.709 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14000 34f4dc63768c3d07ee28b01c0c057760 116 SUPERFAMILY SSF53137 4 114 1.72E-49 T 11-10-2018 AMD27_14000 34f4dc63768c3d07ee28b01c0c057760 116 Gene3D G3DSA:3.30.420.100 2 116 1.7E-40 T 11-10-2018 AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 SUPERFAMILY SSF101386 2 97 7.03E-26 T 11-10-2018 AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 Gene3D G3DSA:1.10.287.1080 1 121 6.9E-44 T 11-10-2018 AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 Gene3D G3DSA:1.10.287.1080 125 252 5.1E-36 T 11-10-2018 AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 21 94 2.6E-27 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 162 218 2.7E-9 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 TIGRFAM TIGR00444 mazG: MazG family protein 7 249 9.3E-77 T 11-10-2018 IPR011551 NTP pyrophosphohydrolase MazG AMD27_02640 4769c2873c1d403cfa57aec6c293d1f0 253 SUPERFAMILY SSF101386 134 224 1.32E-20 T 11-10-2018 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 239 248 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 139 151 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 208 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 156 163 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 3.9E-24 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Pfam PF00175 Oxidoreductase NAD-binding domain 215 317 5.6E-23 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 SUPERFAMILY SSF63380 109 205 1.57E-24 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 SUPERFAMILY SSF54292 9 101 4.85E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Gene3D G3DSA:3.10.20.30 1 102 1.1E-30 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Gene3D G3DSA:3.40.50.80 203 335 2.2E-38 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 SUPERFAMILY SSF52343 193 333 4.58E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Pfam PF00970 Oxidoreductase FAD-binding domain 112 205 3.0E-20 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 88 3.7E-15 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 Gene3D G3DSA:2.40.30.10 103 202 3.7E-25 T 11-10-2018 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 156 163 1.1E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 1.1E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_07850 bef2ee5a32948e8b9534aa29c99bf8c0 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 1.1E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_07815 e41f683b7b283eeb41c25f217f475fc7 219 Pfam PF00005 ABC transporter 23 159 3.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_07815 e41f683b7b283eeb41c25f217f475fc7 219 Gene3D G3DSA:3.40.50.300 2 217 4.1E-50 T 11-10-2018 AMD27_07815 e41f683b7b283eeb41c25f217f475fc7 219 SMART SM00382 22 212 3.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_07815 e41f683b7b283eeb41c25f217f475fc7 219 SUPERFAMILY SSF52540 9 208 3.06E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07815 e41f683b7b283eeb41c25f217f475fc7 219 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 Gene3D G3DSA:3.10.450.70 56 118 9.7E-7 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 SUPERFAMILY SSF54423 69 118 3.4E-9 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 Pfam PF13098 Thioredoxin-like domain 148 267 7.5E-26 T 11-10-2018 IPR012336 Thioredoxin-like fold AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 SUPERFAMILY SSF52833 130 270 4.84E-31 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 Pfam PF10411 Disulfide bond isomerase protein N-terminus 64 117 3.3E-12 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AMD27_01020 f7ab57792a203151223444ace4cf1df8 271 Gene3D G3DSA:3.40.30.10 119 271 2.0E-38 T 11-10-2018 AMD27_05135 b4b08795de131fb13bbaf697969a155d 202 Pfam PF01323 DSBA-like thioredoxin domain 2 183 1.5E-14 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_05135 b4b08795de131fb13bbaf697969a155d 202 Gene3D G3DSA:3.40.30.10 1 194 3.8E-27 T 11-10-2018 AMD27_05135 b4b08795de131fb13bbaf697969a155d 202 SUPERFAMILY SSF52833 1 184 1.42E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.8E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 Pfam PF13972 Bacterial transcriptional repressor 62 208 1.6E-38 T 11-10-2018 IPR025722 Bacterial transcriptional repressor TetR AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.1E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.1E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 Gene3D G3DSA:1.10.357.10 4 220 4.6E-65 T 11-10-2018 AMD27_02220 b14968a2ac81763b59d4115c4fc7e62d 230 SUPERFAMILY SSF46689 7 78 8.48E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 SUPERFAMILY SSF53187 163 477 5.65E-123 T 11-10-2018 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 169 471 5.0E-122 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 331 338 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 SUPERFAMILY SSF52949 1 150 8.83E-12 T 11-10-2018 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 479 35.366 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 Gene3D G3DSA:3.40.220.10 1 166 6.9E-13 T 11-10-2018 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 PRINTS PR00481 Cytosol aminopeptidase signature 305 326 2.4E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 PRINTS PR00481 Cytosol aminopeptidase signature 327 347 2.4E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 PRINTS PR00481 Cytosol aminopeptidase signature 268 289 2.4E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 PRINTS PR00481 Cytosol aminopeptidase signature 355 370 2.4E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 PRINTS PR00481 Cytosol aminopeptidase signature 246 263 2.4E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 39 135 1.6E-8 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMD27_00960 b11abbba13eb5a5244cccb6a23543ed4 480 Gene3D G3DSA:3.40.630.10 167 479 6.7E-135 T 11-10-2018 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Pfam PF00005 ABC transporter 38 193 4.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 ProSitePatterns PS00211 ABC transporters family signature. 432 446 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Gene3D G3DSA:3.40.50.300 280 537 2.3E-77 T 11-10-2018 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Gene3D G3DSA:3.40.50.300 20 277 2.8E-76 T 11-10-2018 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 SUPERFAMILY SSF52540 284 531 5.56E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 SUPERFAMILY SSF52540 31 265 1.04E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 267 0.67 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 511 534 0.0027 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 SMART SM00382 46 243 4.5E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 SMART SM00382 319 508 3.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_04950 847f99314b91e62f1ff88cd76b91a5f3 537 Pfam PF00005 ABC transporter 313 460 4.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 SUPERFAMILY SSF54373 464 547 4.71E-5 T 11-10-2018 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 117 240 5.6E-33 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 268 572 2.5E-63 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Gene3D G3DSA:3.30.9.10 346 555 2.0E-77 T 11-10-2018 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 6 619 21.125 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Gene3D G3DSA:3.40.50.150 10 252 2.2E-85 T 11-10-2018 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 SUPERFAMILY SSF51971 268 599 1.41E-19 T 11-10-2018 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Pfam PF01266 FAD dependent oxidoreductase 268 593 3.5E-26 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 Gene3D G3DSA:3.50.50.60 269 617 2.0E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 PRINTS PR00419 Adrenodoxin reductase family signature 268 290 7.2E-5 T 11-10-2018 AMD27_13660 ece9252df2cb7bbcdbadd88f194bda15 635 PRINTS PR00419 Adrenodoxin reductase family signature 291 304 7.2E-5 T 11-10-2018 AMD27_12000 562b8e5d4edeaaa661c4df2cd9667c60 414 SUPERFAMILY SSF56935 81 414 2.88E-27 T 11-10-2018 AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 SUPERFAMILY SSF55031 230 341 2.22E-20 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 PIRSF PIRSF037238 38 430 9.3E-106 T 11-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 123 132 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 Pfam PF01546 Peptidase family M20/M25/M40 124 426 2.8E-27 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 Pfam PF07687 Peptidase dimerisation domain 227 326 1.3E-18 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 SUPERFAMILY SSF53187 38 428 1.71E-46 T 11-10-2018 AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 Gene3D G3DSA:3.40.630.10 54 418 1.6E-109 T 11-10-2018 AMD27_15910 7ab967e9bca64746080a1800cd2b9d59 431 Gene3D G3DSA:3.30.70.360 229 338 1.6E-109 T 11-10-2018 AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 SUPERFAMILY SSF54211 5 119 2.53E-25 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 Pfam PF00825 Ribonuclease P 7 113 1.9E-23 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 11 116 4.2E-21 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 116 15.496 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 Gene3D G3DSA:3.30.230.10 1 120 1.1E-35 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_16170 53709b032d8a2f3d7ed7ea05d67f03bd 130 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 108 4.0E-41 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMD27_00270 f4aa8e6a53a89acb55c93dc93244960c 238 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 235 36.885 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMD27_00270 f4aa8e6a53a89acb55c93dc93244960c 238 Gene3D G3DSA:3.40.50.150 10 234 9.0E-76 T 11-10-2018 AMD27_00270 f4aa8e6a53a89acb55c93dc93244960c 238 SUPERFAMILY SSF53335 14 230 1.43E-48 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_00270 f4aa8e6a53a89acb55c93dc93244960c 238 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 10 229 1.1E-87 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMD27_00270 f4aa8e6a53a89acb55c93dc93244960c 238 Pfam PF13489 Methyltransferase domain 50 202 4.7E-24 T 11-10-2018 AMD27_09130 0f297296ee37e9cbbdf49673311ff4b7 239 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 233 1.7E-63 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMD27_09130 0f297296ee37e9cbbdf49673311ff4b7 239 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 235 2.8E-63 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMD27_09130 0f297296ee37e9cbbdf49673311ff4b7 239 Gene3D G3DSA:3.90.550.10 6 238 1.6E-66 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_09130 0f297296ee37e9cbbdf49673311ff4b7 239 SUPERFAMILY SSF53448 13 235 4.51E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_09130 0f297296ee37e9cbbdf49673311ff4b7 239 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 12 234 38.704 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 PIRSF PIRSF000124 1 419 2.6E-105 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 400 1.8E-58 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 SMART SM00984 300 404 3.3E-33 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 SUPERFAMILY SSF52413 285 414 1.31E-31 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 Gene3D G3DSA:1.20.5.100 187 214 3.3E-11 T 11-10-2018 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 186 276 1.7E-24 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 SUPERFAMILY SSF48179 185 281 1.28E-22 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 Gene3D G3DSA:3.40.50.720 1 186 2.2E-12 T 11-10-2018 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 Gene3D G3DSA:3.40.50.720 215 420 5.3E-61 T 11-10-2018 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 300 404 3.9E-23 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 SUPERFAMILY SSF51735 1 188 8.47E-6 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00440 e9b6a9324e4e7ff7f65faa3afdcaa6da 420 PIRSF PIRSF500134 1 420 4.2E-111 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 PRINTS PR00625 DnaJ domain signature 24 39 1.7E-15 T 11-10-2018 IPR001623 DnaJ domain AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 PRINTS PR00625 DnaJ domain signature 40 60 1.7E-15 T 11-10-2018 IPR001623 DnaJ domain AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 PRINTS PR00625 DnaJ domain signature 6 24 1.7E-15 T 11-10-2018 IPR001623 DnaJ domain AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 Pfam PF01556 DnaJ C terminal domain 144 296 3.9E-31 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 SUPERFAMILY SSF46565 3 111 8.61E-27 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 SMART SM00271 3 60 1.3E-23 T 11-10-2018 IPR001623 DnaJ domain AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 SUPERFAMILY SSF49493 226 305 8.63E-14 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 Pfam PF00226 DnaJ domain 4 65 1.4E-19 T 11-10-2018 IPR001623 DnaJ domain AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 Gene3D G3DSA:1.10.287.110 1 139 2.5E-26 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 SUPERFAMILY SSF49493 135 224 2.35E-14 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 Gene3D G3DSA:2.60.260.20 220 296 1.3E-17 T 11-10-2018 AMD27_14455 25db7cc675570d4341ed9a43edf23fe1 322 Gene3D G3DSA:2.60.260.20 140 219 1.4E-20 T 11-10-2018 AMD27_11325 39d27710011df8060cb8643145e1f275 265 Pfam PF05675 Protein of unknown function (DUF817) 8 245 5.2E-83 T 11-10-2018 IPR008535 Protein of unknown function DUF817 AMD27_11325 39d27710011df8060cb8643145e1f275 265 PIRSF PIRSF009141 1 261 5.9E-75 T 11-10-2018 IPR008535 Protein of unknown function DUF817 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 Gene3D G3DSA:3.40.640.10 4 287 2.5E-102 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 5 423 2.5E-199 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 PIRSF PIRSF001434 1 425 9.2E-133 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 Gene3D G3DSA:3.90.1150.10 291 425 4.2E-51 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 422 7.8E-143 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_14725 ca2351d2c8be29778635dcc97668f0f9 425 SUPERFAMILY SSF53383 4 423 1.99E-126 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05925 00cf1450925aae641c1f4969394c6707 239 SUPERFAMILY SSF50249 3 68 1.44E-6 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_05925 00cf1450925aae641c1f4969394c6707 239 Gene3D G3DSA:2.40.50.140 3 68 5.5E-11 T 11-10-2018 AMD27_05925 00cf1450925aae641c1f4969394c6707 239 Gene3D G3DSA:1.20.1440.120 73 239 4.6E-44 T 11-10-2018 AMD27_05925 00cf1450925aae641c1f4969394c6707 239 Pfam PF02565 Recombination protein O C terminal 76 226 8.3E-19 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMD27_05925 00cf1450925aae641c1f4969394c6707 239 Pfam PF11967 Recombination protein O N terminal 5 67 4.0E-9 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMD27_05925 00cf1450925aae641c1f4969394c6707 239 TIGRFAM TIGR00613 reco: DNA repair protein RecO 8 151 6.1E-14 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMD27_17750 b340ba303ec1562a2ef1c2d3d5ec65b0 202 SUPERFAMILY SSF81273 160 199 2.94E-6 T 11-10-2018 AMD27_17750 b340ba303ec1562a2ef1c2d3d5ec65b0 202 Gene3D G3DSA:4.10.430.10 105 158 9.2E-9 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 417 430 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Gene3D G3DSA:1.10.601.10 116 462 3.3E-127 T 11-10-2018 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 626 43.96 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF04545 Sigma-70, region 4 561 614 5.4E-18 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF04539 Sigma-70 region 3 472 547 1.3E-30 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 SUPERFAMILY SSF88946 118 460 1.21E-94 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Gene3D G3DSA:1.10.10.10 466 541 1.4E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 SUPERFAMILY SSF88659 466 539 1.48E-20 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF04542 Sigma-70 region 2 393 462 1.8E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 586 612 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF03979 Sigma-70 factor, region 1.1 8 84 8.9E-27 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 SUPERFAMILY SSF88659 523 625 7.85E-27 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 PRINTS PR00046 Major sigma-70 factor signature 601 612 5.0E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 PRINTS PR00046 Major sigma-70 factor signature 565 577 5.0E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 PRINTS PR00046 Major sigma-70 factor signature 441 449 5.0E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 PRINTS PR00046 Major sigma-70 factor signature 586 601 5.0E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 PRINTS PR00046 Major sigma-70 factor signature 417 430 5.0E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 389 625 6.0E-122 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Gene3D G3DSA:1.10.10.10 542 627 4.3E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Gene3D G3DSA:1.10.220.120 4 66 6.7E-26 T 11-10-2018 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF04546 Sigma-70, non-essential region 142 362 7.2E-51 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 389 614 5.0E-38 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMD27_04425 792746509ef1bcb891ef3e92bd930e59 628 Pfam PF00140 Sigma-70 factor, region 1.2 101 131 4.4E-12 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 SUPERFAMILY SSF100934 503 614 6.28E-29 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Gene3D G3DSA:3.30.420.40 191 361 8.2E-113 T 11-10-2018 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 SUPERFAMILY SSF53067 201 376 1.91E-48 T 11-10-2018 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 SUPERFAMILY SSF100920 382 535 1.57E-45 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 614 8.2E-264 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 212 222 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 384 403 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 465 481 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 149 169 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.4E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 SUPERFAMILY SSF53067 19 193 1.26E-52 T 11-10-2018 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Gene3D G3DSA:3.90.640.10 239 311 8.2E-113 T 11-10-2018 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 42.969 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Gene3D G3DSA:3.30.420.40 22 374 8.2E-113 T 11-10-2018 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Gene3D G3DSA:1.20.1270.10 519 614 1.2E-23 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 206 219 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Gene3D G3DSA:2.60.34.10 380 515 4.1E-46 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMD27_08765 439d5e4a9123b17f16e6293a745c111d 619 Pfam PF00012 Hsp70 protein 21 598 8.6E-172 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 PIRSF PIRSF006305 1 200 6.7E-37 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 Gene3D G3DSA:3.90.950.10 8 199 2.8E-46 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 194 6.0E-39 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 Hamap MF_00528 Septum formation protein Maf [maf]. 9 200 21.534 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 Pfam PF02545 Maf-like protein 9 195 2.9E-37 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_07225 c07d074d35ef24a44a2a88d4ca5ff91b 201 SUPERFAMILY SSF52972 7 195 3.07E-47 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_16130 df261f76bf152a8aa94929b19572665b 175 SUPERFAMILY SSF53271 6 173 8.92E-51 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_16130 df261f76bf152a8aa94929b19572665b 175 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 3.2E-66 T 11-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AMD27_16130 df261f76bf152a8aa94929b19572665b 175 Pfam PF00156 Phosphoribosyl transferase domain 17 160 2.0E-23 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_16130 df261f76bf152a8aa94929b19572665b 175 Gene3D G3DSA:3.40.50.2020 1 174 5.3E-62 T 11-10-2018 AMD27_06045 cac24113d2a841a5efb0f0d2c4ff80fc 68 Pfam PF13619 KTSC domain 10 56 3.1E-7 T 11-10-2018 IPR025309 KTSC domain AMD27_10460 d11f5549814d658a204d0d97fe2e5c73 722 Pfam PF07690 Major Facilitator Superfamily 25 411 3.1E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_10460 d11f5549814d658a204d0d97fe2e5c73 722 Gene3D G3DSA:1.20.1250.20 16 418 1.5E-11 T 11-10-2018 AMD27_10460 d11f5549814d658a204d0d97fe2e5c73 722 SUPERFAMILY SSF103473 19 408 8.76E-21 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_10460 d11f5549814d658a204d0d97fe2e5c73 722 SUPERFAMILY SSF103473 620 708 8.63E-5 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 SUPERFAMILY SSF48179 626 716 1.45E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Gene3D G3DSA:3.40.50.720 315 498 6.8E-68 T 11-10-2018 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 SUPERFAMILY SSF51735 314 497 2.06E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 206 6.3E-38 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Gene3D G3DSA:1.10.1040.50 499 711 1.8E-77 T 11-10-2018 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 SUPERFAMILY SSF52096 6 308 1.12E-64 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 1.9E-62 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 498 593 8.6E-24 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 495 519 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 716 0.0 T 11-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 Gene3D G3DSA:3.90.226.10 1 314 3.4E-95 T 11-10-2018 AMD27_01340 88cb049474249e2b6bb5922ac62bd4ab 717 SUPERFAMILY SSF48179 497 642 3.49E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 564 671 4.7E-37 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Gene3D G3DSA:3.55.50.10 111 221 9.2E-50 T 11-10-2018 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Gene3D G3DSA:3.30.1920.30 254 336 9.2E-50 T 11-10-2018 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 591 6.9E-57 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Gene3D G3DSA:2.30.110.50 31 379 9.2E-50 T 11-10-2018 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Gene3D G3DSA:2.40.50.230 432 540 4.2E-30 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 27 587 4.8E-68 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 SUPERFAMILY SSF69279 25 216 2.55E-41 T 11-10-2018 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 693 841 3.5E-43 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 Pfam PF05954 Phage late control gene D protein (GPD) 43 385 6.3E-63 T 11-10-2018 AMD27_06355 dbe60c449d241e953424796cb55af8fe 1060 SUPERFAMILY SSF69255 441 535 2.07E-23 T 11-10-2018 AMD27_15695 cbdf52ba84327d70cef062d6bfd0b85c 73 Gene3D G3DSA:1.10.260.40 3 72 1.1E-22 T 11-10-2018 AMD27_15695 cbdf52ba84327d70cef062d6bfd0b85c 73 SMART SM00530 13 68 3.0E-16 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_15695 cbdf52ba84327d70cef062d6bfd0b85c 73 SUPERFAMILY SSF47413 1 69 5.07E-20 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_15695 cbdf52ba84327d70cef062d6bfd0b85c 73 Pfam PF01381 Helix-turn-helix 14 68 1.7E-18 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_03815 94c8ea406ccf312dc01a7f1ff529fb6d 369 Pfam PF02661 Fic/DOC family 149 214 4.8E-16 T 11-10-2018 IPR003812 Fido domain AMD27_03815 94c8ea406ccf312dc01a7f1ff529fb6d 369 SUPERFAMILY SSF140931 148 281 1.09E-32 T 11-10-2018 IPR036597 Fido-like domain superfamily AMD27_03815 94c8ea406ccf312dc01a7f1ff529fb6d 369 PIRSF PIRSF038925 1 361 2.2E-113 T 11-10-2018 IPR026287 Adenosine monophosphate-protein transferase AMD27_03815 94c8ea406ccf312dc01a7f1ff529fb6d 369 Pfam PF13784 Fic/DOC family N-terminal 28 109 9.3E-24 T 11-10-2018 IPR025758 Fic/DOC N-terminal AMD27_03815 94c8ea406ccf312dc01a7f1ff529fb6d 369 Gene3D G3DSA:1.10.3290.10 50 288 3.6E-36 T 11-10-2018 IPR036597 Fido-like domain superfamily AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 SUPERFAMILY SSF55347 129 238 2.62E-37 T 11-10-2018 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 SUPERFAMILY SSF51735 5 270 1.04E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 267 34.998 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 PIRSF PIRSF000161 3 270 1.1E-85 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 Gene3D G3DSA:3.40.50.720 7 266 3.9E-101 T 11-10-2018 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 267 7.6E-99 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 1.3E-41 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 127 7.3E-41 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15830 dcd077ce680e855f2bae1a5f1e0e06b1 273 Gene3D G3DSA:3.30.360.10 129 236 3.9E-101 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Pfam PF02272 DHHA1 domain 752 889 6.2E-22 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 892 190.325 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 SUPERFAMILY SSF55186 565 727 1.57E-47 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 SMART SM00863 665 714 9.4E-20 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 SUPERFAMILY SSF101353 254 474 2.22E-59 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 871 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Gene3D G3DSA:3.10.310.40 782 890 2.0E-25 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Pfam PF01411 tRNA synthetases class II (A) 5 565 1.2E-217 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 665 714 5.0E-17 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Gene3D G3DSA:3.30.930.10 1 250 2.2E-119 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Gene3D G3DSA:3.30.980.10 574 715 3.2E-49 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 318 331 2.2E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 2.2E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 2.2E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 2.2E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 294 310 2.2E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Gene3D G3DSA:3.30.54.20 636 695 3.2E-49 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 SUPERFAMILY SSF55681 2 253 3.23E-105 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 Gene3D G3DSA:2.40.30.130 474 564 1.5E-9 T 11-10-2018 AMD27_10295 6576b9557d06297c364064c1a1b21477 892 SUPERFAMILY SSF50447 466 564 1.48E-17 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 SMART SM01001 10 161 9.0E-102 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 PIRSF PIRSF001338 7 167 8.1E-66 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 32.073 T 11-10-2018 IPR033747 Class I PurE AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 Pfam PF00731 AIR carboxylase 12 159 7.8E-63 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 165 1.3E-64 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 SUPERFAMILY SSF52255 11 166 4.71E-66 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMD27_16060 6d1936d0819076f99ad264e6d417d1b7 170 Gene3D G3DSA:3.40.50.7700 1 169 1.0E-72 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 Gene3D G3DSA:3.40.50.150 141 432 6.5E-71 T 11-10-2018 AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 Gene3D G3DSA:1.10.940.10 7 140 5.6E-34 T 11-10-2018 IPR035926 NusB-like superfamily AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 Pfam PF01189 16S rRNA methyltransferase RsmB/F 245 430 2.8E-50 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 415 432 1.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 1.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 250 260 1.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 1.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 221 235 1.0E-26 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 SUPERFAMILY SSF48013 11 148 2.35E-28 T 11-10-2018 IPR035926 NusB-like superfamily AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 17 432 1.4E-104 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 SUPERFAMILY SSF53335 140 432 1.38E-63 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_00155 2c81ff0c141b2c84add859468811ed90 433 Pfam PF01029 NusB family 12 129 2.8E-19 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 Pfam PF01266 FAD dependent oxidoreductase 2 397 4.1E-73 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 Gene3D G3DSA:3.50.50.60 1 74 1.3E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 Gene3D G3DSA:3.30.9.10 134 361 1.5E-53 T 11-10-2018 AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 47.87 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 SUPERFAMILY SSF51905 1 415 2.59E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 SUPERFAMILY SSF54373 270 359 1.15E-16 T 11-10-2018 AMD27_03480 e65c9986e34f10aaed0394f28d7a58f1 419 Gene3D G3DSA:3.50.50.60 105 403 1.5E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09325 42dcddf8cb60148ef1905fec5b4b20c5 202 Pfam PF04264 YceI-like domain 26 188 4.6E-43 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMD27_09325 42dcddf8cb60148ef1905fec5b4b20c5 202 SMART SM00867 25 189 7.4E-68 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMD27_09325 42dcddf8cb60148ef1905fec5b4b20c5 202 SUPERFAMILY SSF101874 24 188 1.96E-53 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMD27_09325 42dcddf8cb60148ef1905fec5b4b20c5 202 Gene3D G3DSA:2.40.128.110 24 189 1.2E-51 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 PIRSF PIRSF004846 2 254 9.2E-61 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 Gene3D G3DSA:3.40.190.10 103 212 8.0E-65 T 11-10-2018 AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 SUPERFAMILY SSF53850 22 251 9.59E-55 T 11-10-2018 AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 Gene3D G3DSA:3.40.190.10 26 250 8.0E-65 T 11-10-2018 AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 249 2.0E-54 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMD27_07805 7fab0cec600e43c510a20975a5873eab 255 Pfam PF13531 Bacterial extracellular solute-binding protein 25 250 2.6E-36 T 11-10-2018 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 Gene3D G3DSA:1.10.10.60 227 334 9.1E-26 T 11-10-2018 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 1.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 1.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 SUPERFAMILY SSF46689 283 331 2.96E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 Pfam PF12833 Helix-turn-helix domain 254 331 8.6E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 SMART SM00342 248 330 6.7E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_03135 04ecee7cdf0ef230706a9be259bf8a05 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 2.0E-47 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 SMART SM01086 263 349 1.9E-4 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 80 98 1.1E-26 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 125 143 1.1E-26 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 158 176 1.1E-26 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 192 206 1.1E-26 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 SMART SM00382 76 327 3.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 Gene3D G3DSA:3.40.50.300 14 261 3.7E-56 T 11-10-2018 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 SUPERFAMILY SSF52540 36 332 5.6E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 Gene3D G3DSA:1.10.8.60 264 352 1.6E-9 T 11-10-2018 AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 268 333 1.3E-7 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_03695 7d45b698ba665da0cd90629fc9becaeb 353 Pfam PF07724 AAA domain (Cdc48 subfamily) 75 256 2.2E-36 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 SUPERFAMILY SSF54913 1 112 5.08E-46 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 PIRSF PIRSF039144 1 112 3.2E-55 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 83 103 2.0E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 23 41 2.0E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 52 75 2.0E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 2 17 2.0E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 SMART SM00938 4 105 8.4E-67 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 Gene3D G3DSA:3.30.70.120 1 112 1.0E-46 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMD27_00910 b061b3e4c16ca8ac5542667d38b1a6bc 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-43 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 Gene3D G3DSA:3.90.70.10 4 127 2.3E-13 T 11-10-2018 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 ProSitePatterns PS00211 ABC transporters family signature. 612 626 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 Pfam PF00005 ABC transporter 496 640 6.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 SUPERFAMILY SSF90123 144 458 2.22E-60 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 Pfam PF00664 ABC transporter transmembrane region 161 424 1.1E-30 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 Gene3D G3DSA:1.20.1560.10 145 456 7.3E-62 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 SMART SM00382 500 686 2.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 8 703 1.2E-254 T 11-10-2018 IPR017750 ATPase, type I secretion system AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 SUPERFAMILY SSF52540 465 699 2.22E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06125 1b4c9ccfd456d1c3c06e70fff9419d10 712 Gene3D G3DSA:3.40.50.300 465 711 2.0E-65 T 11-10-2018 AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.6E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 SUPERFAMILY SSF46689 2 76 1.05E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00740 87e5e19ba5a40a39812ef5880b998b48 200 Gene3D G3DSA:1.10.357.10 12 200 9.5E-21 T 11-10-2018 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 SMART SM00525 189 209 0.001 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 267 2.8E-103 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 SUPERFAMILY SSF55811 218 342 2.03E-21 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 Gene3D G3DSA:1.10.340.30 21 130 1.1E-80 T 11-10-2018 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 158 2.9E-17 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 SMART SM00478 39 188 6.1E-32 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 ProSitePatterns PS01155 Endonuclease III family signature. 100 127 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 SUPERFAMILY SSF48150 6 223 8.64E-70 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 Pfam PF14815 NUDIX domain 233 341 6.2E-22 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 Gene3D G3DSA:3.90.79.10 223 344 5.7E-18 T 11-10-2018 AMD27_15785 8f45b33f83859c1c91123af72c7959a4 345 Gene3D G3DSA:1.10.1670.10 9 209 1.1E-80 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 359 394 0.0038 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 395 431 29.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 138 173 1.8E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 215 250 9.2E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 287 322 0.0029 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 251 286 1.2E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 323 358 3.0E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 70 101 0.69 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 174 214 120.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SMART SM00671 102 137 12.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 117 135 24.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 139 173 0.0012 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 175 214 0.0016 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 216 250 0.0027 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 360 390 1.3E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 403 426 8.5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 289 322 0.0038 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 325 358 0.0027 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF08238 Sel1 repeat 251 286 1.1E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SUPERFAMILY SSF81901 197 434 4.77E-44 T 11-10-2018 AMD27_16610 4c0166843007dbbda981f519ade701bb 463 SUPERFAMILY SSF81901 54 193 5.67E-24 T 11-10-2018 AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Gene3D G3DSA:1.25.40.10 20 195 1.9E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Gene3D G3DSA:1.25.40.10 196 451 2.8E-55 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16610 4c0166843007dbbda981f519ade701bb 463 Pfam PF13181 Tetratricopeptide repeat 71 98 0.004 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 752 769 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 Pfam PF00593 TonB dependent receptor 258 768 2.2E-50 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 769 1.5E-88 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 Gene3D G3DSA:2.170.130.10 44 172 3.9E-43 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 160 6.5E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 Gene3D G3DSA:2.40.170.20 175 769 1.5E-132 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_02350 5244e171d427f853bb89669e0ff881a1 769 SUPERFAMILY SSF56935 26 769 4.58E-128 T 11-10-2018 AMD27_09630 1fdaabc17ab41c92abd8a004c1997c1f 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.8E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_09630 1fdaabc17ab41c92abd8a004c1997c1f 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.8E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_09630 1fdaabc17ab41c92abd8a004c1997c1f 204 SUPERFAMILY SSF46689 3 74 1.7E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_09630 1fdaabc17ab41c92abd8a004c1997c1f 204 Gene3D G3DSA:1.10.357.10 1 177 4.2E-19 T 11-10-2018 AMD27_09630 1fdaabc17ab41c92abd8a004c1997c1f 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 1.6E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_07185 3764323b8a2bc049173a9445cff21d79 385 SUPERFAMILY SSF56796 2 384 2.22E-113 T 11-10-2018 AMD27_07185 3764323b8a2bc049173a9445cff21d79 385 Gene3D G3DSA:1.20.1090.10 186 384 3.6E-60 T 11-10-2018 AMD27_07185 3764323b8a2bc049173a9445cff21d79 385 Gene3D G3DSA:3.40.50.1970 1 185 8.6E-50 T 11-10-2018 AMD27_07185 3764323b8a2bc049173a9445cff21d79 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMD27_07185 3764323b8a2bc049173a9445cff21d79 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 376 2.8E-108 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMD27_05510 4df5da849c29e2665d313d93bbeb8347 214 Gene3D G3DSA:3.30.2350.10 5 213 6.8E-64 T 11-10-2018 AMD27_05510 4df5da849c29e2665d313d93bbeb8347 214 Pfam PF00849 RNA pseudouridylate synthase 15 164 1.1E-26 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_05510 4df5da849c29e2665d313d93bbeb8347 214 SUPERFAMILY SSF55120 6 213 5.28E-59 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_05510 4df5da849c29e2665d313d93bbeb8347 214 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 53 67 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 Pfam PF01676 Metalloenzyme superfamily 11 499 6.0E-76 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 Gene3D G3DSA:3.40.1450.10 82 312 2.1E-203 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 511 1.0E-215 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 9 512 48.123 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 87 299 8.9E-76 T 11-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 Gene3D G3DSA:3.40.720.10 10 509 2.1E-203 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 SUPERFAMILY SSF53649 11 511 9.29E-71 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 SUPERFAMILY SSF64158 82 310 1.7E-80 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_00975 4c5f659de5531bbd220ed5c167b7da1e 517 PIRSF PIRSF001492 4 514 4.0E-192 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 ProSitePatterns PS00571 Amidases signature. 152 183 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 Gene3D G3DSA:3.90.1300.10 3 487 5.3E-196 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 SUPERFAMILY SSF75304 1 478 1.7E-162 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 479 90.5 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 478 2.7E-181 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMD27_11890 1e3435110487b105bc2667a3d395735f 492 Pfam PF01425 Amidase 25 468 1.3E-158 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 SUPERFAMILY SSF52490 18 213 9.68E-68 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 Gene3D G3DSA:3.30.1330.20 226 338 7.2E-33 T 11-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 SMART SM00865 212 331 1.9E-44 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 21 179 4.4E-42 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 SUPERFAMILY SSF55307 209 325 5.95E-36 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 PRINTS PR00423 Cell division protein FtsZ signature 194 216 1.8E-45 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 PRINTS PR00423 Cell division protein FtsZ signature 217 238 1.8E-45 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 PRINTS PR00423 Cell division protein FtsZ signature 104 124 1.8E-45 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 PRINTS PR00423 Cell division protein FtsZ signature 132 153 1.8E-45 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 ProSitePatterns PS01134 FtsZ protein signature 1. 50 84 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 15 356 36.082 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 Gene3D G3DSA:3.40.50.1440 9 225 7.6E-80 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 SMART SM00864 19 210 1.8E-111 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 Pfam PF12327 FtsZ family, C-terminal domain 227 322 5.1E-31 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 ProSitePatterns PS01135 FtsZ protein signature 2. 103 124 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMD27_15305 954018a8d9aa664ced9c9ae6d7a22107 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 338 2.5E-126 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PIRSF PIRSF001438 1 307 1.0E-121 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 38.997 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Gene3D G3DSA:3.30.160.40 219 304 6.1E-27 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 1.0E-79 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 SUPERFAMILY SSF54782 219 305 8.76E-26 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 1.5E-115 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 4.3E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 4.3E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 4.3E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 4.3E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 4.3E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Gene3D G3DSA:3.40.190.10 4 208 2.1E-86 T 11-10-2018 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 293 3.7E-21 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 SUPERFAMILY SSF53850 3 215 2.34E-85 T 11-10-2018 AMD27_01120 1bb870aa924a83b974ae128901bd3814 307 Gene3D G3DSA:3.40.190.10 101 200 2.1E-86 T 11-10-2018 AMD27_10670 1038229f96f708d466c66ac31677fbeb 233 Gene3D G3DSA:3.30.420.10 3 186 8.8E-19 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_10670 1038229f96f708d466c66ac31677fbeb 233 SMART SM00479 2 171 0.0028 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_10670 1038229f96f708d466c66ac31677fbeb 233 SUPERFAMILY SSF53098 3 196 1.27E-19 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_10670 1038229f96f708d466c66ac31677fbeb 233 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 188 214 2.2E-5 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 SUPERFAMILY SSF51306 80 201 2.79E-30 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 Pfam PF00717 Peptidase S24-like 115 185 1.8E-11 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 123 134 2.7E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 151 163 2.7E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 112 122 2.7E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMD27_08580 f7a4c6f4459a169197f6ef082b327b24 205 Gene3D G3DSA:2.10.109.10 85 204 9.7E-44 T 11-10-2018 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 158 2.3E-58 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 Pfam PF01467 Cytidylyltransferase-like 7 135 1.2E-20 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 6.3E-49 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 6.3E-49 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 6.3E-49 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 6.3E-49 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 6.3E-49 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 SUPERFAMILY SSF52374 3 158 2.36E-44 T 11-10-2018 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 35.424 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMD27_04560 b50769beed23e2d47304bc569da016f0 163 Gene3D G3DSA:3.40.50.620 1 163 2.1E-58 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_04560 b50769beed23e2d47304bc569da016f0 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 62 8.8E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 Gene3D G3DSA:3.60.15.10 502 754 9.4E-55 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 Pfam PF00753 Metallo-beta-lactamase superfamily 511 591 1.2E-5 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 SMART SM00849 513 709 0.0064 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 Pfam PF03772 Competence protein 181 479 2.9E-56 T 11-10-2018 IPR004477 ComEC/Rec2-related protein AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 78 738 3.7E-88 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 202 410 8.4E-18 T 11-10-2018 IPR004477 ComEC/Rec2-related protein AMD27_05070 5ac0df29ba25517ffc1b6a5f3a762134 764 SUPERFAMILY SSF56281 501 756 3.57E-45 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 Gene3D G3DSA:1.10.10.10 8 90 5.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 SUPERFAMILY SSF55781 88 268 7.85E-32 T 11-10-2018 AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 Gene3D G3DSA:3.30.450.40 91 270 1.2E-32 T 11-10-2018 IPR029016 GAF-like domain superfamily AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 Pfam PF01614 Bacterial transcriptional regulator 141 267 1.5E-28 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 Pfam PF09339 IclR helix-turn-helix domain 26 74 3.0E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 SUPERFAMILY SSF46785 24 94 3.91E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_03935 ecc654e8f3d813a33e1b1938c2ec3e14 271 SMART SM00346 23 112 2.6E-29 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMD27_08375 c53882bb1c83b3ddd5c10795658463fb 469 Pfam PF17289 Terminase RNaseH-like domain 305 450 1.7E-18 T 11-10-2018 IPR035421 Terminase, large subunit gp17-like AMD27_08375 c53882bb1c83b3ddd5c10795658463fb 469 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 316 452 4.3E-28 T 11-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit AMD27_13845 1add72e5ea30fda42cfa629bcfb53121 414 Pfam PF03631 Virulence factor BrkB 29 276 6.5E-53 T 11-10-2018 IPR017039 Virulence factor BrkB AMD27_13845 1add72e5ea30fda42cfa629bcfb53121 414 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 1 301 21.396 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial AMD27_13845 1add72e5ea30fda42cfa629bcfb53121 414 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 277 8.0E-61 T 11-10-2018 IPR017039 Virulence factor BrkB AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 4 472 38.503 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 Gene3D G3DSA:3.40.50.620 1 309 1.1E-135 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 SUPERFAMILY SSF47323 329 471 2.22E-36 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 Pfam PF09190 DALR domain 349 411 7.3E-20 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 63 72 1.2E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 27 38 1.2E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 1.2E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 1.2E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 SUPERFAMILY SSF52374 6 318 3.84E-96 T 11-10-2018 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 471 4.7E-176 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 Gene3D G3DSA:1.20.120.640 310 472 4.0E-41 T 11-10-2018 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 SMART SM00840 349 411 9.1E-21 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMD27_06085 fcb362e63b7df92a45b4c1b2e9fdfc15 473 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 19 318 3.1E-132 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMD27_09050 6208f35cb4707f88a90159d35a324660 361 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 4 360 2.1E-162 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AMD27_09050 6208f35cb4707f88a90159d35a324660 361 SUPERFAMILY SSF53335 3 360 1.84E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_09050 6208f35cb4707f88a90159d35a324660 361 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 343 353 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site AMD27_09050 6208f35cb4707f88a90159d35a324660 361 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 4 360 9.6E-160 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMD27_09050 6208f35cb4707f88a90159d35a324660 361 Gene3D G3DSA:3.40.50.150 7 357 7.2E-129 T 11-10-2018 AMD27_09050 6208f35cb4707f88a90159d35a324660 361 Gene3D G3DSA:3.40.1350.30 39 182 7.2E-129 T 11-10-2018 AMD27_09050 6208f35cb4707f88a90159d35a324660 361 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 294 323 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMD27_09050 6208f35cb4707f88a90159d35a324660 361 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 1 361 41.598 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 SUPERFAMILY SSF55021 8 88 1.02E-13 T 11-10-2018 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 Gene3D G3DSA:3.40.50.170 94 288 2.1E-66 T 11-10-2018 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 44 56 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 3.3E-57 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 Pfam PF00551 Formyl transferase 94 269 3.1E-34 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 PIRSF PIRSF036480 6 288 2.2E-108 T 11-10-2018 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 Pfam PF01842 ACT domain 10 67 1.3E-7 T 11-10-2018 IPR002912 ACT domain AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 SUPERFAMILY SSF53328 94 288 1.22E-55 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 Gene3D G3DSA:3.30.70.260 5 91 6.1E-22 T 11-10-2018 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 287 43.358 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_02225 0d436f3ef315b66ebc200ccc6c21e942 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 287 6.4E-115 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Gene3D G3DSA:3.40.50.10930 181 387 6.3E-31 T 11-10-2018 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 3 890 6.3E-179 T 11-10-2018 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 2 1225 13.979 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 SUPERFAMILY SSF52540 416 898 5.58E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Gene3D G3DSA:1.10.486.10 510 732 3.9E-109 T 11-10-2018 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Gene3D G3DSA:3.40.50.10930 2 101 6.7E-11 T 11-10-2018 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 PIRSF PIRSF000980 2 1210 5.9E-156 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 SUPERFAMILY SSF52980 915 1220 1.02E-28 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 Gene3D G3DSA:3.40.50.300 395 891 3.9E-109 T 11-10-2018 AMD27_14505 44888013cbae3da86561cd294f1ed58e 1227 SUPERFAMILY SSF52540 3 406 2.52E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SMART SM00267 267 439 1.7E-56 T 11-10-2018 IPR000160 GGDEF domain AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SMART SM00052 449 696 1.0E-61 T 11-10-2018 IPR001633 EAL domain AMD27_08095 806740253bda6379bd687d5742e9c79e 707 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 277 438 4.4E-40 T 11-10-2018 IPR000160 GGDEF domain AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Pfam PF00563 EAL domain 461 690 2.3E-57 T 11-10-2018 IPR001633 EAL domain AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Pfam PF08448 PAS fold 160 268 1.6E-9 T 11-10-2018 IPR013656 PAS fold-4 AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Gene3D G3DSA:3.30.70.270 276 453 6.6E-52 T 11-10-2018 AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SUPERFAMILY SSF141868 459 703 3.27E-67 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Gene3D G3DSA:3.30.450.20 31 137 4.8E-11 T 11-10-2018 AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Gene3D G3DSA:3.20.20.450 454 706 1.1E-72 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SUPERFAMILY SSF55785 165 275 7.33E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Gene3D G3DSA:3.30.450.20 138 275 1.3E-13 T 11-10-2018 AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SUPERFAMILY SSF55785 48 142 2.09E-10 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_08095 806740253bda6379bd687d5742e9c79e 707 SUPERFAMILY SSF55073 283 441 2.28E-44 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Pfam PF00990 Diguanylate cyclase, GGDEF domain 279 433 4.1E-45 T 11-10-2018 IPR000160 GGDEF domain AMD27_08095 806740253bda6379bd687d5742e9c79e 707 Pfam PF08447 PAS fold 53 123 4.3E-10 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 ProSitePatterns PS01054 Transaldolase signature 1. 32 40 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 SUPERFAMILY SSF51569 4 319 1.15E-98 T 11-10-2018 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 15 314 9.4E-89 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 TIGRFAM TIGR00874 talAB: transaldolase 5 319 2.0E-125 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 Gene3D G3DSA:3.20.20.70 2 326 1.6E-119 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07120 8737b9a636ec9751c26bd2e62ad51498 329 ProSitePatterns PS00958 Transaldolase active site. 130 147 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Hamap MF_00347 Polyphosphate kinase [ppk]. 15 688 27.496 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Gene3D G3DSA:3.30.1840.10 11 322 4.5E-102 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 PIRSF PIRSF015589 1 690 3.1E-275 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Gene3D G3DSA:3.30.870.10 509 690 1.1E-66 T 11-10-2018 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Gene3D G3DSA:3.30.870.10 325 508 6.5E-71 T 11-10-2018 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Pfam PF13089 Polyphosphate kinase N-terminal domain 18 123 2.9E-33 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 SUPERFAMILY SSF140356 15 118 2.62E-35 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 SUPERFAMILY SSF143724 121 322 2.75E-65 T 11-10-2018 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Pfam PF02503 Polyphosphate kinase middle domain 133 330 6.9E-62 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 SUPERFAMILY SSF56024 325 501 2.04E-56 T 11-10-2018 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 SUPERFAMILY SSF56024 509 689 3.59E-69 T 11-10-2018 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 Pfam PF13090 Polyphosphate kinase C-terminal domain 339 687 2.7E-152 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMD27_04155 3587cecdfb2f3cf7ec1934f50fc09f99 690 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 17 688 5.4E-285 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 SUPERFAMILY SSF56014 631 805 6.28E-49 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Gene3D G3DSA:3.30.413.10 628 798 9.1E-33 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 2.2E-8 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 101 110 2.2E-8 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 2.2E-8 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 2.2E-8 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 421 469 1.1E-9 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 SUPERFAMILY SSF51905 2 186 1.38E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 3 798 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 677 693 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Gene3D G3DSA:3.50.50.60 4 278 7.2E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 557 619 1.1E-9 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 SUPERFAMILY SSF55124 500 639 1.34E-25 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Gene3D G3DSA:1.10.10.1100 421 475 2.2E-11 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.5E-13 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.5E-13 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 1.5E-13 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 1.5E-13 T 11-10-2018 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 280 7.4E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PIRSF PIRSF037149 1 836 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 SUPERFAMILY SSF51905 145 305 8.64E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Gene3D G3DSA:3.50.50.60 106 241 7.2E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 630 739 3.2E-15 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00397 Sirohaem Fe-binding site signature 634 652 1.2E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_07760 5ff22b0ee11eba24715e3279e2d3f659 848 PRINTS PR00397 Sirohaem Fe-binding site signature 677 695 1.2E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 323 4.0E-76 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 PIRSF PIRSF037167 5 332 6.6E-134 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 Pfam PF05175 Methyltransferase small domain 156 250 4.5E-17 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 319 1.2E-110 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 SUPERFAMILY SSF53335 21 319 8.14E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 Gene3D G3DSA:3.40.50.150 109 306 1.7E-48 T 11-10-2018 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 229 235 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_08675 442c70cc6ca67695bc9a160e60de7872 336 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 11 325 48.724 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMD27_14825 dd18deb94e8f43d0c978569dc037c9cd 101 SUPERFAMILY SSF54909 1 96 1.61E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_14825 dd18deb94e8f43d0c978569dc037c9cd 101 Gene3D G3DSA:3.30.70.100 1 96 4.4E-31 T 11-10-2018 AMD27_14825 dd18deb94e8f43d0c978569dc037c9cd 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 8.0E-8 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 SUPERFAMILY SSF55129 1 58 8.24E-20 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 Gene3D G3DSA:3.30.1390.20 1 58 1.4E-22 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 1.1E-19 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 1.6E-15 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.307 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 PIRSF PIRSF002211 1 58 3.4E-24 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13990 fbb1a3408f385fd1d4f516cb4bfea131 58 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site AMD27_05530 8b5699c3265308dbf4c2948a0f8afa3a 265 SUPERFAMILY SSF52096 7 263 3.84E-60 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_05530 8b5699c3265308dbf4c2948a0f8afa3a 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 263 2.3E-39 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_05530 8b5699c3265308dbf4c2948a0f8afa3a 265 Gene3D G3DSA:1.10.12.10 209 254 3.7E-22 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_05530 8b5699c3265308dbf4c2948a0f8afa3a 265 Gene3D G3DSA:3.90.226.10 9 191 2.5E-52 T 11-10-2018 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 ProSitePatterns PS00501 Signal peptidases I serine active site. 70 77 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 Gene3D G3DSA:2.10.109.10 59 267 1.9E-64 T 11-10-2018 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 Gene3D G3DSA:2.170.230.10 136 227 1.9E-64 T 11-10-2018 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 ProSitePatterns PS00761 Signal peptidases I signature 3. 233 246 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 228 247 1.8E-23 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 125 137 1.8E-23 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 61 77 1.8E-23 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 266 2.6E-45 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 SUPERFAMILY SSF51306 59 269 8.37E-62 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 Pfam PF00717 Peptidase S24-like 68 148 1.4E-20 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 ProSitePatterns PS00760 Signal peptidases I lysine active site. 127 139 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AMD27_05900 bd0cb55808db73b61ebcca105b8960b7 284 Pfam PF10502 Signal peptidase, peptidase S26 226 265 4.9E-5 T 11-10-2018 IPR019533 Peptidase S26 AMD27_06385 22899af8596e868f7146486868b3f7f4 266 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 5.6E-77 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_06385 22899af8596e868f7146486868b3f7f4 266 Pfam PF02673 Bacitracin resistance protein BacA 9 260 7.3E-87 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_06385 22899af8596e868f7146486868b3f7f4 266 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 265 18.701 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 566 5.0E-300 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 Gene3D G3DSA:3.20.20.140 128 566 3.5E-299 T 11-10-2018 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 1 118 2.0E-55 T 11-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 294 311 3.4E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 333 349 3.4E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 3.4E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 3.4E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 SUPERFAMILY SSF51338 2 176 2.64E-62 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 Pfam PF01979 Amidohydrolase family 124 453 4.5E-82 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 ProSitePatterns PS01120 Urease nickel ligands signature. 126 139 - T 11-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 SUPERFAMILY SSF51556 129 566 2.58E-201 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 Gene3D G3DSA:2.30.40.10 3 479 3.5E-299 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 Hamap MF_01953 Urease subunit alpha [ureC]. 1 566 57.59 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 ProSitePatterns PS00145 Urease active site. 316 332 - T 11-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02095 b6de1b9099e7ee5dc6a76d2fcafdbe54 566 SUPERFAMILY SSF51338 423 476 1.7E-6 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Pfam PF08245 Mur ligase middle domain 120 303 5.2E-42 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 SUPERFAMILY SSF63418 13 108 1.44E-22 T 11-10-2018 IPR035911 MurE/MurF, N-terminal AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 42 464 2.0E-124 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Gene3D G3DSA:3.40.1390.10 1 93 5.9E-36 T 11-10-2018 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Pfam PF01225 Mur ligase family, catalytic domain 38 85 5.7E-8 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 SUPERFAMILY SSF53623 114 323 1.83E-53 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 SUPERFAMILY SSF53244 325 464 6.87E-25 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 466 30.453 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 395 3.1E-12 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Gene3D G3DSA:3.40.1190.10 94 322 2.2E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_14660 8cb32a93fecbb549b9356aab860138cd 469 Gene3D G3DSA:3.90.190.20 323 469 6.4E-39 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_13090 68386c9d711fb9c962177e9d73ddbaac 593 Gene3D G3DSA:3.40.50.300 99 308 7.4E-20 T 11-10-2018 AMD27_13090 68386c9d711fb9c962177e9d73ddbaac 593 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 14 69 9.7E-11 T 11-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 AMD27_13090 68386c9d711fb9c962177e9d73ddbaac 593 Pfam PF03237 Terminase-like family 164 382 4.0E-38 T 11-10-2018 IPR004921 Terminase large subunit, T4likevirus-type AMD27_13090 68386c9d711fb9c962177e9d73ddbaac 593 Pfam PF17289 Terminase RNaseH-like domain 411 568 2.7E-21 T 11-10-2018 IPR035421 Terminase, large subunit gp17-like AMD27_13090 68386c9d711fb9c962177e9d73ddbaac 593 Gene3D G3DSA:3.30.420.240 385 564 1.4E-5 T 11-10-2018 AMD27_02185 520b2768bf856a04ba5dac51d4c177f4 84 Gene3D G3DSA:3.30.70.330 1 84 4.6E-22 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMD27_02185 520b2768bf856a04ba5dac51d4c177f4 84 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 71 3.1E-17 T 11-10-2018 IPR000504 RNA recognition motif domain GO:0003676 AMD27_02185 520b2768bf856a04ba5dac51d4c177f4 84 SUPERFAMILY SSF54928 2 81 2.01E-22 T 11-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 AMD27_02185 520b2768bf856a04ba5dac51d4c177f4 84 SMART SM00360 2 75 6.6E-21 T 11-10-2018 IPR000504 RNA recognition motif domain GO:0003676 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 17 305 54.054 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 24 305 2.1E-107 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 SUPERFAMILY SSF56349 21 296 1.47E-58 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 21 98 6.7E-14 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Gene3D G3DSA:1.10.150.130 19 108 5.9E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Gene3D G3DSA:1.10.443.10 119 299 7.5E-68 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 19 305 54.387 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMD27_01025 25724d29cc1228463686d0cefcf62ca0 305 Pfam PF00589 Phage integrase family 122 290 7.3E-51 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 SUPERFAMILY SSF109604 313 501 4.08E-44 T 11-10-2018 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 Gene3D G3DSA:3.30.420.150 115 295 1.1E-90 T 11-10-2018 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 Gene3D G3DSA:1.10.3210.10 310 512 1.0E-55 T 11-10-2018 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 SUPERFAMILY SSF53067 11 131 1.56E-34 T 11-10-2018 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 PIRSF PIRSF001267 1 502 3.3E-195 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 Pfam PF01966 HD domain 336 431 1.6E-4 T 11-10-2018 IPR006674 HD domain AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 Pfam PF02541 Ppx/GppA phosphatase family 25 308 1.4E-83 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 SUPERFAMILY SSF53067 135 311 8.24E-48 T 11-10-2018 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 11 306 3.4E-98 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AMD27_02805 89baa7b2c3ccf732d368decd8e82dc3e 517 Gene3D G3DSA:3.30.420.40 12 303 1.1E-90 T 11-10-2018 AMD27_14845 e37200291801e3ed283d6529a00407bd 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 2.4E-112 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMD27_14845 e37200291801e3ed283d6529a00407bd 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 48.229 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMD27_14845 e37200291801e3ed283d6529a00407bd 252 Pfam PF00977 Histidine biosynthesis protein 5 234 7.6E-88 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMD27_14845 e37200291801e3ed283d6529a00407bd 252 Gene3D G3DSA:3.20.20.70 1 252 9.7E-110 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_14845 e37200291801e3ed283d6529a00407bd 252 SUPERFAMILY SSF51366 1 251 1.41E-85 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 Pfam PF00696 Amino acid kinase family 27 272 1.9E-44 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 Hamap MF_00082 Acetylglutamate kinase [argB]. 26 288 50.139 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 SUPERFAMILY SSF53633 7 295 1.02E-93 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 Gene3D G3DSA:3.40.1160.10 5 300 2.5E-98 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 28 270 1.7E-78 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_03625 3a27db455032d77804542fdb76fc2ac4 301 PIRSF PIRSF000728 12 295 1.0E-108 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 PIRSF PIRSF004911 4 336 1.6E-106 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 Gene3D G3DSA:3.20.20.70 46 331 1.9E-83 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 Pfam PF04055 Radical SAM superfamily 113 214 5.3E-7 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 11 332 1.6E-134 T 11-10-2018 IPR022462 Lysine-2,3-aminomutase-like AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 TIGRFAM TIGR00238 TIGR00238: KamA family protein 8 325 2.9E-98 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 Pfam PF13394 4Fe-4S single cluster domain 114 181 4.2E-6 T 11-10-2018 AMD27_10430 99e56f0491f48b7394a208ea6e0526d9 338 SUPERFAMILY SSF102114 99 321 2.75E-21 T 11-10-2018 AMD27_14115 260c094ae257fe1ff3e8b2c455e4cefc 287 Gene3D G3DSA:3.40.50.300 40 240 2.2E-48 T 11-10-2018 AMD27_14115 260c094ae257fe1ff3e8b2c455e4cefc 287 SUPERFAMILY SSF52540 53 233 1.03E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14115 260c094ae257fe1ff3e8b2c455e4cefc 287 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 45 230 2.2E-72 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMD27_14115 260c094ae257fe1ff3e8b2c455e4cefc 287 Pfam PF01926 50S ribosome-binding GTPase 64 175 1.2E-17 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_14115 260c094ae257fe1ff3e8b2c455e4cefc 287 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 50 234 26.681 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMD27_02090 282dbf62b040545b3ef6788b29793c57 115 Pfam PF00699 Urease beta subunit 3 100 1.0E-42 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02090 282dbf62b040545b3ef6788b29793c57 115 Gene3D G3DSA:2.10.150.10 1 115 4.3E-47 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02090 282dbf62b040545b3ef6788b29793c57 115 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 1.0E-44 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02090 282dbf62b040545b3ef6788b29793c57 115 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 30.966 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02090 282dbf62b040545b3ef6788b29793c57 115 SUPERFAMILY SSF51278 1 105 1.44E-46 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 3 294 1.2E-95 T 11-10-2018 IPR017685 HTH-type transcriptional regulator ArgP AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 SUPERFAMILY SSF46785 2 111 3.3E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 SUPERFAMILY SSF53850 93 292 2.53E-20 T 11-10-2018 AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 Gene3D G3DSA:3.40.190.290 90 295 5.4E-66 T 11-10-2018 AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 Pfam PF03466 LysR substrate binding domain 94 287 7.8E-15 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 Gene3D G3DSA:1.10.10.10 1 83 1.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05755 2e3108ff161b0a5b410dc5b94614b768 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 5.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11155 65df7d15664770c4b9d5d4648f304981 468 Gene3D G3DSA:1.20.1740.10 14 468 1.8E-61 T 11-10-2018 AMD27_11155 65df7d15664770c4b9d5d4648f304981 468 Pfam PF00324 Amino acid permease 23 464 1.6E-103 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_11155 65df7d15664770c4b9d5d4648f304981 468 ProSitePatterns PS00218 Amino acid permeases signature. 48 78 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_11155 65df7d15664770c4b9d5d4648f304981 468 PIRSF PIRSF006060 1 468 1.3E-64 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_06895 ef5d18caa96fe585d09d411c0443bf99 508 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 356 500 5.3E-30 T 11-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit AMD27_06895 ef5d18caa96fe585d09d411c0443bf99 508 Pfam PF17289 Terminase RNaseH-like domain 343 497 1.1E-12 T 11-10-2018 IPR035421 Terminase, large subunit gp17-like AMD27_06895 ef5d18caa96fe585d09d411c0443bf99 508 Gene3D G3DSA:3.40.50.300 46 148 4.2E-6 T 11-10-2018 AMD27_06895 ef5d18caa96fe585d09d411c0443bf99 508 SUPERFAMILY SSF52540 50 131 8.16E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 Pfam PF04079 Segregation and condensation complex subunit ScpB 21 179 4.3E-49 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 SUPERFAMILY SSF46785 16 92 5.44E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 21 184 3.1E-33 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 SUPERFAMILY SSF46785 95 170 4.23E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 Gene3D G3DSA:1.10.10.10 93 188 1.1E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 Gene3D G3DSA:1.10.10.10 12 92 1.8E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_12520 53fcc7d7bcb1d3b14b024dc0021f52b0 196 PIRSF PIRSF019345 4 196 9.1E-55 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 SUPERFAMILY SSF53633 4 254 8.51E-77 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 Pfam PF00696 Amino acid kinase family 3 229 7.9E-53 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 414 1.5E-130 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 PIRSF PIRSF000726 1 62 1.3E-20 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 PIRSF PIRSF000726 54 422 2.1E-138 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 SUPERFAMILY SSF55021 260 338 3.71E-18 T 11-10-2018 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 414 6.1E-133 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 Gene3D G3DSA:3.30.2130.10 258 424 4.0E-61 T 11-10-2018 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 Pfam PF13840 ACT domain 348 410 1.4E-17 T 11-10-2018 IPR027795 CASTOR, ACT domain AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 Gene3D G3DSA:3.40.1160.10 1 257 7.3E-89 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 SUPERFAMILY SSF55021 341 416 8.51E-25 T 11-10-2018 AMD27_10305 b44f212e98602a324ab0099a19f0aa3b 426 Pfam PF01842 ACT domain 279 336 2.3E-10 T 11-10-2018 IPR002912 ACT domain AMD27_14390 9f68add59c85adb3314904c0658f2379 570 Gene3D G3DSA:3.50.50.60 10 407 1.4E-189 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14390 9f68add59c85adb3314904c0658f2379 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 5.1E-7 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 183 198 5.1E-7 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 64 4.5E-6 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 SUPERFAMILY SSF54373 215 311 3.73E-33 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 Gene3D G3DSA:3.30.70.20 471 565 3.2E-36 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 SUPERFAMILY SSF51905 6 437 2.08E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14390 9f68add59c85adb3314904c0658f2379 570 SUPERFAMILY SSF54862 470 570 5.91E-29 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 466 567 9.9E-50 T 11-10-2018 AMD27_14390 9f68add59c85adb3314904c0658f2379 570 Gene3D G3DSA:3.30.9.90 83 470 1.4E-189 T 11-10-2018 AMD27_08495 5e143bb1d711e934215af5db692e11b7 575 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 231 304 3.4E-11 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_08495 5e143bb1d711e934215af5db692e11b7 575 Gene3D G3DSA:3.40.50.300 4 322 7.8E-24 T 11-10-2018 AMD27_08495 5e143bb1d711e934215af5db692e11b7 575 Pfam PF13476 AAA domain 14 118 2.3E-8 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMD27_08495 5e143bb1d711e934215af5db692e11b7 575 SUPERFAMILY SSF52540 5 305 3.74E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15425 a8be45c07046ef8c5c11a165d927f71b 356 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 39 347 3.2E-132 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AMD27_15425 a8be45c07046ef8c5c11a165d927f71b 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 336 1.1E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Gene3D G3DSA:3.90.226.10 1 317 1.4E-99 T 11-10-2018 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 202 2.0E-30 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 SUPERFAMILY SSF48179 500 638 8.33E-20 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 SUPERFAMILY SSF52096 2 304 3.85E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Gene3D G3DSA:1.10.1040.50 502 706 6.0E-58 T 11-10-2018 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 SUPERFAMILY SSF51735 319 499 1.18E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Gene3D G3DSA:3.40.50.720 319 501 1.4E-63 T 11-10-2018 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 501 601 1.1E-15 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 320 498 9.2E-59 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_03115 7f44ae855af65ef80a55f04d300a1539 714 SUPERFAMILY SSF48179 622 712 2.04E-17 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_11830 f656acaddeef882044f9366eb783bb48 492 Gene3D G3DSA:2.40.160.60 124 492 6.2E-20 T 11-10-2018 AMD27_11830 f656acaddeef882044f9366eb783bb48 492 Gene3D G3DSA:2.40.160.60 18 123 1.2E-5 T 11-10-2018 AMD27_11830 f656acaddeef882044f9366eb783bb48 492 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 250 492 7.0E-9 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD27_11830 f656acaddeef882044f9366eb783bb48 492 SUPERFAMILY SSF56935 19 492 5.04E-46 T 11-10-2018 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 174 401 6.3E-81 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Pfam PF02817 e3 binding domain 121 151 1.1E-10 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 SUPERFAMILY SSF51230 1 89 6.81E-23 T 11-10-2018 IPR011053 Single hybrid motif AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Pfam PF00364 Biotin-requiring enzyme 4 75 7.5E-19 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 SUPERFAMILY SSF47005 118 155 8.5E-10 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Gene3D G3DSA:2.40.50.100 2 79 1.1E-20 T 11-10-2018 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 SUPERFAMILY SSF52777 176 403 1.07E-87 T 11-10-2018 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 403 1.0E-178 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Gene3D G3DSA:3.30.559.10 172 404 6.0E-94 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMD27_04665 b47b69ce8f3397251e03a6d44a11e7b4 404 Gene3D G3DSA:4.10.320.10 108 157 2.2E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 18 169 42.016 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 SUPERFAMILY SSF46767 89 170 6.93E-31 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 91 169 8.8E-31 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 Gene3D G3DSA:1.10.10.10 88 171 1.7E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 Gene3D G3DSA:3.30.160.70 14 85 2.7E-15 T 11-10-2018 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 19 85 1.3E-7 T 11-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 SUPERFAMILY SSF53155 16 94 7.85E-16 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMD27_03455 1da19e75d43dbb645c50e026218e52e9 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 89 168 3.5E-35 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMD27_00850 be8c6c9cc002912d134e74d3108da581 214 Pfam PF03458 UPF0126 domain 5 79 6.0E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 AMD27_00850 be8c6c9cc002912d134e74d3108da581 214 Pfam PF03458 UPF0126 domain 91 162 2.1E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 SMART SM00079 51 272 0.001 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 SMART SM00062 51 273 2.5E-72 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 Gene3D G3DSA:3.40.190.10 141 231 4.8E-76 T 11-10-2018 AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 268 7.3E-53 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 SUPERFAMILY SSF53850 41 269 4.29E-60 T 11-10-2018 AMD27_10905 f218c2d31d7994f164484f31d834a9b4 289 Gene3D G3DSA:3.40.190.10 46 266 4.8E-76 T 11-10-2018 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 Pfam PF07650 KH domain 263 327 1.2E-14 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 Gene3D G3DSA:3.30.300.20 217 341 3.0E-41 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 40 202 1.6E-32 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 SUPERFAMILY SSF52540 41 251 5.88E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 Gene3D G3DSA:3.40.50.300 36 215 5.0E-50 T 11-10-2018 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 Pfam PF01926 50S ribosome-binding GTPase 42 156 1.1E-25 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 SUPERFAMILY SSF54814 214 340 4.12E-38 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 Hamap MF_00367 GTPase Era [era]. 37 339 36.489 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 42 62 1.9E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 110 128 1.9E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_05915 7d925ade226ed2676ac75ea033e22b0f 342 TIGRFAM TIGR00436 era: GTP-binding protein Era 40 322 2.7E-95 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01230 5397fdaa3596199b5fee40f7f3b71be5 174 SUPERFAMILY SSF160369 5 162 1.31E-44 T 11-10-2018 AMD27_01230 5397fdaa3596199b5fee40f7f3b71be5 174 Pfam PF00466 Ribosomal protein L10 6 103 7.1E-24 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMD27_01230 5397fdaa3596199b5fee40f7f3b71be5 174 Gene3D G3DSA:3.30.70.1730 1 126 8.2E-33 T 11-10-2018 AMD27_01230 5397fdaa3596199b5fee40f7f3b71be5 174 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 163 26.238 T 11-10-2018 IPR022973 Ribosomal protein L10 AMD27_01230 5397fdaa3596199b5fee40f7f3b71be5 174 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 11-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03395 6897cf8fc6cd7387ad1be3264cb7baae 176 SUPERFAMILY SSF51161 20 170 9.01E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_03395 6897cf8fc6cd7387ad1be3264cb7baae 176 Gene3D G3DSA:2.160.10.10 1 173 1.2E-61 T 11-10-2018 AMD27_03395 6897cf8fc6cd7387ad1be3264cb7baae 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 123 1.1E-10 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_05795 49548d9d73adb19219230006283cf857 309 Gene3D G3DSA:3.40.190.10 91 303 1.7E-81 T 11-10-2018 AMD27_05795 49548d9d73adb19219230006283cf857 309 Gene3D G3DSA:1.10.10.10 1 86 9.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05795 49548d9d73adb19219230006283cf857 309 Pfam PF03466 LysR substrate binding domain 91 282 1.4E-36 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_05795 49548d9d73adb19219230006283cf857 309 SUPERFAMILY SSF46785 2 113 1.16E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05795 49548d9d73adb19219230006283cf857 309 Gene3D G3DSA:3.40.190.10 167 268 1.7E-81 T 11-10-2018 AMD27_05795 49548d9d73adb19219230006283cf857 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05795 49548d9d73adb19219230006283cf857 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05795 49548d9d73adb19219230006283cf857 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05795 49548d9d73adb19219230006283cf857 309 SUPERFAMILY SSF53850 92 294 5.43E-35 T 11-10-2018 AMD27_05795 49548d9d73adb19219230006283cf857 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.8E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_02655 5a67a6046349805ae4c039888e25af12 162 SUPERFAMILY SSF55083 4 147 2.49E-46 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_02655 5a67a6046349805ae4c039888e25af12 162 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 86 97 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_02655 5a67a6046349805ae4c039888e25af12 162 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 131 1.6E-33 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_02655 5a67a6046349805ae4c039888e25af12 162 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 131 6.3E-39 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_02655 5a67a6046349805ae4c039888e25af12 162 Gene3D G3DSA:3.30.70.560 3 155 9.7E-47 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 PRINTS PR01011 Glutathione peroxidase family signature 140 149 2.7E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 PRINTS PR01011 Glutathione peroxidase family signature 57 73 2.7E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 PRINTS PR01011 Glutathione peroxidase family signature 22 39 2.7E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 SUPERFAMILY SSF52833 3 178 2.51E-52 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 PIRSF PIRSF000303 1 180 2.4E-59 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 Gene3D G3DSA:3.40.30.10 1 180 1.1E-58 T 11-10-2018 AMD27_00690 13ea12d1bc0c7e677a650597c0490770 180 Pfam PF00255 Glutathione peroxidase 4 110 3.1E-38 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Gene3D G3DSA:1.10.3810.10 145 347 6.4E-244 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 13 734 5.9E-243 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 SUPERFAMILY SSF56601 305 747 1.3E-111 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 PIRSF PIRSF002799 1 781 7.7E-300 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 SUPERFAMILY SSF53955 143 345 3.37E-69 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Pfam PF14814 Bifunctional transglycosylase second domain 59 141 2.9E-20 T 11-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 669 2.2E-24 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Pfam PF00912 Transglycosylase 153 323 1.9E-60 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Gene3D G3DSA:3.40.710.10 48 705 6.4E-244 T 11-10-2018 AMD27_05245 3443bdbca9b5da09008019a3d69be364 800 Gene3D G3DSA:3.30.2060.10 56 144 6.4E-244 T 11-10-2018 AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 SUPERFAMILY SSF52540 5 333 9.15E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 2.6E-154 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 Gene3D G3DSA:3.30.450.90 1 100 1.6E-37 T 11-10-2018 AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 Gene3D G3DSA:3.40.50.300 101 345 4.0E-106 T 11-10-2018 AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 SMART SM00382 122 247 4.3E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_03665 25248a9f491885a0f8f204c66f398c00 345 Pfam PF00437 Type II/IV secretion system protein 12 269 5.4E-47 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_07475 6957d84fb8873908f71e2c5074b9563b 77 SUPERFAMILY SSF81901 12 73 7.19E-8 T 11-10-2018 AMD27_07475 6957d84fb8873908f71e2c5074b9563b 77 Gene3D G3DSA:1.25.40.10 5 77 2.3E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 SUPERFAMILY SSF55021 417 511 1.67E-23 T 11-10-2018 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 327 416 1.3E-22 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 422 511 3.1E-23 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 511 2.3E-214 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 SUPERFAMILY SSF55021 335 420 6.18E-24 T 11-10-2018 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Gene3D G3DSA:3.40.50.1100 14 325 1.0E-125 T 11-10-2018 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 314 1.3E-74 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Gene3D G3DSA:3.40.50.1100 50 146 1.0E-125 T 11-10-2018 AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 SUPERFAMILY SSF53686 7 363 1.83E-94 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_09000 7d9d0f6ce86e2a519af8f6dee0f004df 512 Gene3D G3DSA:3.40.1020.10 336 512 3.2E-63 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 91 1.9E-21 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 25 596 9.2E-130 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Gene3D G3DSA:3.30.1360.70 1 111 8.2E-24 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 SUPERFAMILY SSF52374 116 485 1.61E-80 T 11-10-2018 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Pfam PF00750 tRNA synthetases class I (R) 302 444 1.3E-11 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Pfam PF00750 tRNA synthetases class I (R) 101 177 9.7E-11 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Gene3D G3DSA:1.10.730.10 470 596 6.0E-35 T 11-10-2018 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 SMART SM01016 3 91 4.0E-33 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 SUPERFAMILY SSF47323 470 596 2.81E-34 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 2.5E-19 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 2.5E-19 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 2.5E-19 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 344 365 2.5E-19 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Pfam PF05746 DALR anticodon binding domain 475 596 1.4E-35 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 SUPERFAMILY SSF55190 22 111 7.72E-23 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 SMART SM00836 475 596 6.5E-56 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMD27_00540 617ca1e9ca9adc5b446153d8833f0ec5 596 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 596 25.008 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMD27_09590 96184b783facd663d2e9b32278869c97 175 Gene3D G3DSA:3.40.140.10 1 174 6.1E-55 T 11-10-2018 AMD27_09590 96184b783facd663d2e9b32278869c97 175 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 13 156 40.612 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMD27_09590 96184b783facd663d2e9b32278869c97 175 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 58 96 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMD27_09590 96184b783facd663d2e9b32278869c97 175 Pfam PF14437 MafB19-like deaminase 8 155 4.9E-32 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMD27_09590 96184b783facd663d2e9b32278869c97 175 SUPERFAMILY SSF53927 6 160 7.03E-50 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 SUPERFAMILY SSF52540 6 416 5.3E-144 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Pfam PF02151 UvrB/uvrC motif 638 670 1.6E-8 T 11-10-2018 IPR001943 UVR domain GO:0005515 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Pfam PF04851 Type III restriction enzyme, res subunit 17 99 5.1E-11 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 5 670 42.812 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Gene3D G3DSA:3.40.50.300 275 415 2.3E-51 T 11-10-2018 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 7 668 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Pfam PF12344 Ultra-violet resistance protein B 553 593 1.3E-20 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Pfam PF00271 Helicase conserved C-terminal domain 442 545 4.7E-16 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 SUPERFAMILY SSF46600 633 672 2.22E-10 T 11-10-2018 IPR036876 UVR domain superfamily AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Gene3D G3DSA:4.10.860.10 616 673 3.3E-8 T 11-10-2018 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Gene3D G3DSA:3.40.50.300 2 236 1.9E-74 T 11-10-2018 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 Gene3D G3DSA:3.40.50.300 416 590 2.5E-47 T 11-10-2018 AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 SMART SM00487 11 427 3.6E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 SMART SM00490 461 547 5.0E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_06515 943fa63d3268814b4d0248a8505c45f4 673 SUPERFAMILY SSF52540 35 588 1.82E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 SMART SM00116 80 127 5.0E-7 T 11-10-2018 IPR000644 CBS domain AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 SMART SM00116 15 62 2.2E-5 T 11-10-2018 IPR000644 CBS domain AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 Pfam PF00571 CBS domain 73 125 9.3E-11 T 11-10-2018 IPR000644 CBS domain AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 Pfam PF00571 CBS domain 15 61 3.2E-9 T 11-10-2018 IPR000644 CBS domain AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 SUPERFAMILY SSF54631 3 141 5.56E-32 T 11-10-2018 AMD27_07465 a49c1c6990ad5dfbbe60ff1e28471925 143 Gene3D G3DSA:3.10.580.10 1 143 8.1E-43 T 11-10-2018 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 SUPERFAMILY SSF50465 334 435 3.45E-32 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 Pfam PF00009 Elongation factor Tu GTP binding domain 24 213 3.0E-45 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 Gene3D G3DSA:2.40.30.10 331 434 2.1E-34 T 11-10-2018 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 434 5.9E-194 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 Gene3D G3DSA:3.40.50.300 1 239 6.7E-76 T 11-10-2018 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 212 7.9E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 SUPERFAMILY SSF52540 16 235 5.68E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 SUPERFAMILY SSF50447 242 327 3.53E-22 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 472 51.914 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 Gene3D G3DSA:2.40.30.10 241 328 4.9E-27 T 11-10-2018 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 PRINTS PR00315 GTP-binding elongation factor signature 26 39 1.3E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 PRINTS PR00315 GTP-binding elongation factor signature 107 117 1.3E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 PRINTS PR00315 GTP-binding elongation factor signature 123 134 1.3E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 PRINTS PR00315 GTP-binding elongation factor signature 160 169 1.3E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_04205 15b5505fadfabfc8b1dd15bba4233683 538 PRINTS PR00315 GTP-binding elongation factor signature 87 95 1.3E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_00360 1b18984559c1266e9cef756fdbbc3a80 366 Gene3D G3DSA:3.30.1950.10 84 165 9.0E-76 T 11-10-2018 AMD27_00360 1b18984559c1266e9cef756fdbbc3a80 366 Pfam PF02563 Polysaccharide biosynthesis/export protein 77 161 8.2E-20 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMD27_00360 1b18984559c1266e9cef756fdbbc3a80 366 Gene3D G3DSA:3.10.560.10 60 251 9.0E-76 T 11-10-2018 AMD27_00360 1b18984559c1266e9cef756fdbbc3a80 366 Gene3D G3DSA:3.10.560.10 252 336 9.0E-76 T 11-10-2018 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 SUPERFAMILY SSF55347 127 274 1.21E-59 T 11-10-2018 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 SUPERFAMILY SSF69055 303 395 2.75E-30 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Gene3D G3DSA:1.10.1740.10 312 397 1.7E-30 T 11-10-2018 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 2.8E-40 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 133 7.9E-41 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 396 4.8E-145 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 PIRSF PIRSF006205 2 398 2.4E-146 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 239 5.3E-38 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 SUPERFAMILY SSF51735 3 151 1.02E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Gene3D G3DSA:3.40.50.720 1 151 7.5E-52 T 11-10-2018 AMD27_08885 8e098867cbbabcb465df649fa69478fc 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 392 44.842 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 21 164 5.6E-41 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 288 311 1.7E-20 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 66 85 1.7E-20 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 276 285 1.7E-20 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 152 163 1.7E-20 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 Gene3D G3DSA:3.40.50.1370 152 310 9.9E-91 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 21 323 2.7E-92 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 66 73 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 173 321 4.5E-29 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 151 168 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 239 248 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 280 285 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 94 103 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 304 318 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 PRINTS PR00101 Aspartate carbamoyltransferase signature 56 78 9.5E-30 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 20 325 40.18 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 Gene3D G3DSA:3.40.50.1370 21 321 9.9E-91 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_10200 a6d57117ccd656d9cadf35ae7b927bcd 343 SUPERFAMILY SSF53671 20 324 3.8E-93 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 Gene3D G3DSA:1.10.150.320 312 371 3.6E-6 T 11-10-2018 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 Gene3D G3DSA:3.20.20.70 29 201 2.1E-11 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 5 411 7.7E-205 T 11-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 Pfam PF04055 Radical SAM superfamily 60 236 4.1E-7 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 SUPERFAMILY SSF102114 43 259 5.89E-16 T 11-10-2018 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 SMART SM00729 55 283 0.0041 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_05995 f126a4f993f3cbaf1b9a4c37ace58fa1 419 SUPERFAMILY SSF47781 302 381 9.67E-15 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 69 712 4.0E-228 T 11-10-2018 IPR010100 TonB-dependent copper receptor AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 Pfam PF00593 TonB dependent receptor 222 711 1.1E-29 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 Gene3D G3DSA:2.40.170.20 176 712 5.8E-49 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 165 1.5E-12 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 Gene3D G3DSA:2.170.130.10 55 171 8.9E-11 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_00730 e21b4db77e2be4006ae35839a48322ef 712 SUPERFAMILY SSF56935 71 712 1.58E-69 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1031 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82866 297 498 1.83E-49 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82693 562 668 1.46E-20 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82693 39 132 8.37E-26 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:1.20.1640.10 510 1018 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Pfam PF00873 AcrB/AcrD/AcrF family 3 1022 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.70.1440 666 861 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82866 829 1021 6.8E-38 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82693 137 331 1.99E-23 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82714 721 804 8.63E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.70.1430 39 814 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82693 669 844 2.88E-11 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 SUPERFAMILY SSF82714 183 273 7.32E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:1.20.1640.10 9 509 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 Gene3D G3DSA:3.30.70.1430 564 665 0.0 T 11-10-2018 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_11460 759661520fccbc89d0bb495c56e01e84 1032 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.4E-102 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 484 1.0E-143 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Gene3D G3DSA:3.90.190.20 340 494 1.7E-55 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Pfam PF08245 Mur ligase middle domain 108 312 5.3E-50 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 SUPERFAMILY SSF63418 10 93 4.58E-10 T 11-10-2018 IPR035911 MurE/MurF, N-terminal AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Gene3D G3DSA:3.40.1390.10 4 95 2.5E-10 T 11-10-2018 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 SUPERFAMILY SSF53244 333 486 2.22E-48 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 415 1.7E-19 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 SUPERFAMILY SSF53623 103 331 2.22E-68 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 484 31.107 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMD27_14665 35c6f2fe6a868dd642df92207a88d780 498 Gene3D G3DSA:3.40.1190.10 99 336 1.3E-72 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Gene3D G3DSA:2.40.50.140 377 446 1.6E-19 T 11-10-2018 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 438 1.1E-101 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Gene3D G3DSA:3.80.30.20 135 376 1.8E-70 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 438 3.3E-180 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Gene3D G3DSA:3.40.50.12160 5 126 1.1E-27 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 441 60.125 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Pfam PF04055 Radical SAM superfamily 143 320 1.3E-26 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 SUPERFAMILY SSF102114 119 367 1.44E-50 T 11-10-2018 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 SMART SM00729 137 362 6.4E-50 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_08910 9cdc7aa569a912c3700e305dcb47d074 447 Pfam PF00919 Uncharacterized protein family UPF0004 5 92 2.4E-20 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMD27_12230 7d5dd60dbfa5fb93a28f9558f5fe3af0 223 SUPERFAMILY SSF52964 64 148 4.45E-8 T 11-10-2018 AMD27_12230 7d5dd60dbfa5fb93a28f9558f5fe3af0 223 Pfam PF03783 Curli production assembly/transport component CsgG 45 221 1.2E-29 T 11-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 Gene3D G3DSA:3.40.190.290 92 298 4.1E-44 T 11-10-2018 AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.3E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 SUPERFAMILY SSF46785 5 89 1.04E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 Pfam PF03466 LysR substrate binding domain 90 297 1.2E-29 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 Gene3D G3DSA:1.10.10.10 4 90 8.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10480 99a4ebfbebc228e1f4c5802a0899087a 310 SUPERFAMILY SSF53850 90 301 1.99E-33 T 11-10-2018 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 Gene3D G3DSA:3.40.640.10 60 301 2.4E-146 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.8E-35 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.8E-35 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.8E-35 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.8E-35 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 Gene3D G3DSA:3.90.1150.10 11 392 2.4E-146 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 Pfam PF00155 Aminotransferase class I and II 27 392 1.1E-76 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_08105 2ac3f33afe24d1966fa749544ecab634 401 SUPERFAMILY SSF53383 1 398 1.13E-109 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 238 251 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 SMART SM00881 4 100 1.0E-35 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 SUPERFAMILY SSF52210 125 289 4.06E-56 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 154 183 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 290 43.296 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 Pfam PF02629 CoA binding domain 6 99 5.5E-30 T 11-10-2018 IPR003781 CoA-binding GO:0048037 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 290 2.3E-139 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 PIRSF PIRSF001553 1 293 8.2E-132 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 Gene3D G3DSA:3.40.50.720 1 125 1.1E-49 T 11-10-2018 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 Gene3D G3DSA:3.40.50.261 126 291 1.1E-74 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 Pfam PF00549 CoA-ligase 153 271 2.5E-19 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 SUPERFAMILY SSF51735 1 124 3.07E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 1.2E-37 T 11-10-2018 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 1.2E-37 T 11-10-2018 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.2E-37 T 11-10-2018 AMD27_04680 d8531fcf79028110e3386ca67a2a329e 297 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 1.2E-37 T 11-10-2018 AMD27_08705 e794d939e8878dd51e411780321b58c0 161 Gene3D G3DSA:3.40.630.30 2 147 1.5E-20 T 11-10-2018 AMD27_08705 e794d939e8878dd51e411780321b58c0 161 Pfam PF00583 Acetyltransferase (GNAT) family 51 137 1.4E-9 T 11-10-2018 IPR000182 GNAT domain AMD27_08705 e794d939e8878dd51e411780321b58c0 161 SUPERFAMILY SSF55729 1 149 5.4E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 Hamap MF_01227 CTP synthase [pyrG]. 2 541 49.393 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 536 1.1E-241 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 SUPERFAMILY SSF52317 289 542 4.59E-83 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 Gene3D G3DSA:3.40.50.300 1 284 4.2E-124 T 11-10-2018 AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 Pfam PF06418 CTP synthase N-terminus 4 264 9.1E-119 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 SUPERFAMILY SSF52540 1 269 7.08E-115 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 Pfam PF00117 Glutamine amidotransferase class-I 301 536 7.1E-58 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_09150 63d7a749c5b7e68174c522dc6e8bbd37 545 Gene3D G3DSA:3.40.50.880 286 545 7.3E-100 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_14655 b5406259fee3516f1ddec5546d3a2f3c 372 Pfam PF00953 Glycosyl transferase family 4 99 296 8.5E-33 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMD27_14655 b5406259fee3516f1ddec5546d3a2f3c 372 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 370 23.174 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14655 b5406259fee3516f1ddec5546d3a2f3c 372 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 372 9.6E-123 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14655 b5406259fee3516f1ddec5546d3a2f3c 372 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14655 b5406259fee3516f1ddec5546d3a2f3c 372 ProSitePatterns PS01348 MraY family signature 2. 201 212 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Pfam PF01134 Glucose inhibited division protein A 8 398 7.9E-165 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 SMART SM01228 543 614 1.4E-40 T 11-10-2018 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 SUPERFAMILY SSF51905 7 261 9.65E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Pfam PF13932 GidA associated domain 402 612 1.4E-73 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Gene3D G3DSA:3.50.50.60 2 222 1.2E-87 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Gene3D G3DSA:3.50.50.60 295 458 6.5E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 621 41.569 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Gene3D G3DSA:1.10.150.570 566 619 7.7E-21 T 11-10-2018 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 618 5.8E-270 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 Gene3D G3DSA:1.10.10.1800 459 547 1.5E-21 T 11-10-2018 AMD27_06685 d73a1d873901214d0871cbf9aa769238 627 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 Gene3D G3DSA:3.30.70.1560 67 167 4.9E-39 T 11-10-2018 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 7 175 3.5E-47 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 38 52 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 SUPERFAMILY SSF55120 3 189 5.76E-38 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 Pfam PF00849 RNA pseudouridylate synthase 3 147 6.0E-11 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_05345 27911bdd1a09087383828227129fe0d8 271 Gene3D G3DSA:3.30.70.580 1 66 1.1E-18 T 11-10-2018 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 592 6.6E-21 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 SUPERFAMILY SSF48179 618 705 7.14E-15 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 SUPERFAMILY SSF52096 5 308 3.95E-49 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Gene3D G3DSA:1.10.1040.50 499 700 1.2E-54 T 11-10-2018 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 216 1.8E-29 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 SUPERFAMILY SSF51735 313 495 2.52E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 1.1E-54 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Gene3D G3DSA:3.90.226.10 2 311 2.0E-70 T 11-10-2018 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 SUPERFAMILY SSF48179 497 601 3.15E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_05720 781367e223c6c95ec7b30ab3e64ca5ad 707 Gene3D G3DSA:3.40.50.720 312 498 1.9E-58 T 11-10-2018 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Pfam PF07499 RuvA, C-terminal domain 153 196 1.2E-10 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 SUPERFAMILY SSF47781 66 135 3.81E-21 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_10580 c359b5b1132a63316aa26315fe888044 198 SUPERFAMILY SSF50249 1 62 4.57E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Gene3D G3DSA:1.10.150.20 66 140 3.4E-25 T 11-10-2018 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Gene3D G3DSA:1.10.8.10 150 196 3.6E-10 T 11-10-2018 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 SUPERFAMILY SSF46929 151 196 1.96E-7 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily AMD27_10580 c359b5b1132a63316aa26315fe888044 198 SMART SM00278 107 126 0.087 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 SMART SM00278 72 91 3.7 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Pfam PF01330 RuvA N terminal domain 1 61 1.2E-19 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 197 28.868 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Gene3D G3DSA:2.40.50.140 1 64 5.4E-23 T 11-10-2018 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 189 6.4E-54 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMD27_10580 c359b5b1132a63316aa26315fe888044 198 Pfam PF14520 Helix-hairpin-helix domain 71 129 4.0E-18 T 11-10-2018 AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 Gene3D G3DSA:1.20.1050.10 84 189 1.1E-58 T 11-10-2018 AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 Gene3D G3DSA:3.40.30.10 2 197 1.1E-58 T 11-10-2018 AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 4.7E-9 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 SUPERFAMILY SSF52833 1 78 7.63E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 116 189 3.1E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMD27_10150 95d85fcac65b952181bbf8e6dd129db7 203 SUPERFAMILY SSF47616 81 199 2.42E-22 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 Gene3D G3DSA:3.40.50.720 3 334 1.2E-123 T 11-10-2018 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 SUPERFAMILY SSF55347 162 323 3.74E-55 T 11-10-2018 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 SMART SM00846 2 162 1.0E-69 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 SUPERFAMILY SSF51735 2 190 1.8E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PIRSF PIRSF000149 1 343 9.2E-114 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 Gene3D G3DSA:3.30.360.10 161 324 1.2E-123 T 11-10-2018 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 112 1.4E-31 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 167 322 9.7E-50 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 160 167 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 1.9E-27 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 1.9E-27 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 1.9E-27 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 183 199 1.9E-27 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_10290 2e8a1b12a242b75b1d319fb0afad37b7 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 156 174 1.9E-27 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 SMART SM00876 220 312 1.4E-41 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 Pfam PF04055 Radical SAM superfamily 50 206 3.3E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 PIRSF PIRSF001619 1 318 2.2E-138 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 Gene3D G3DSA:3.20.20.70 4 315 6.6E-130 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 Hamap MF_01694 Biotin synthase [bioB]. 5 313 42.374 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.3E-18 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 SUPERFAMILY SSF102114 5 310 1.31E-89 T 11-10-2018 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 8.6E-123 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMD27_09410 d1785448c37f02e578c25c8fbc3d1a7b 329 SMART SM00729 43 250 3.1E-42 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_01300 a1a7e4ff55ff1e603a2d86680236579d 66 Gene3D G3DSA:3.30.1660.10 1 66 6.0E-19 T 11-10-2018 IPR025543 Dodecin-like AMD27_01300 a1a7e4ff55ff1e603a2d86680236579d 66 SUPERFAMILY SSF89807 2 66 5.36E-20 T 11-10-2018 IPR036694 Dodecin-like superfamily AMD27_01300 a1a7e4ff55ff1e603a2d86680236579d 66 Pfam PF07311 Dodecin 3 66 5.7E-23 T 11-10-2018 IPR009923 Dodecin AMD27_03890 effc59d55ac573b2b79f1c4fa6a9aa3d 480 SUPERFAMILY SSF103473 14 473 3.4E-60 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_03890 effc59d55ac573b2b79f1c4fa6a9aa3d 480 Gene3D G3DSA:1.20.1250.20 269 475 3.5E-20 T 11-10-2018 AMD27_03890 effc59d55ac573b2b79f1c4fa6a9aa3d 480 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 23 436 8.5E-70 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMD27_03890 effc59d55ac573b2b79f1c4fa6a9aa3d 480 Gene3D G3DSA:1.20.1720.10 22 229 6.6E-41 T 11-10-2018 AMD27_03890 effc59d55ac573b2b79f1c4fa6a9aa3d 480 Pfam PF07690 Major Facilitator Superfamily 27 418 8.6E-47 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Gene3D G3DSA:1.10.8.60 328 401 3.2E-27 T 11-10-2018 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 603 36.445 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 SUPERFAMILY SSF52540 147 395 2.79E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Gene3D G3DSA:2.40.50.920 26 101 1.5E-12 T 11-10-2018 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 1.6E-45 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 594 6.5E-232 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Pfam PF06480 FtsH Extracellular 9 89 4.2E-7 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 SUPERFAMILY SSF140990 407 602 1.19E-73 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 SMART SM00382 189 328 1.3E-25 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Gene3D G3DSA:3.40.50.300 141 327 3.4E-69 T 11-10-2018 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Pfam PF01434 Peptidase family M41 387 593 5.4E-77 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 ProSitePatterns PS00674 AAA-protein family signature. 296 314 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMD27_11585 de76b3fdd34e249a1b7353103a9a2bcf 633 Gene3D G3DSA:1.20.58.760 402 600 4.3E-71 T 11-10-2018 AMD27_14580 cefe33b515afa6c4f2b8efd4d8603c76 91 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 84 1.1E-16 T 11-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMD27_14580 cefe33b515afa6c4f2b8efd4d8603c76 91 PIRSF PIRSF028784 1 91 6.1E-26 T 11-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 8.0E-36 T 11-10-2018 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.7E-38 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 SUPERFAMILY SSF47060 3 89 4.41E-35 T 11-10-2018 IPR009068 S15/NS1, RNA-binding AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.348 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 SMART SM01387 8 88 4.3E-52 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 Gene3D G3DSA:1.10.287.10 2 89 8.9E-36 T 11-10-2018 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14485 b5abe31fe01c01e93f480b6e8756ebe0 89 Pfam PF00312 Ribosomal protein S15 9 88 5.0E-37 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 470 30.041 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 Gene3D G3DSA:3.40.50.620 1 327 5.2E-149 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 319 9.3E-111 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 2.1E-22 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 2.1E-22 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 2.1E-22 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 2.1E-22 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 2.1E-22 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 SUPERFAMILY SSF52374 3 307 6.17E-111 T 11-10-2018 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 Gene3D G3DSA:1.10.10.350 370 493 4.1E-28 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 468 1.2E-142 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMD27_14700 e044de5074bbef180d7b1418b8b0de8e 502 SUPERFAMILY SSF48163 313 471 2.35E-33 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMD27_02130 f4269c7d4856bc82a341362de1387fd9 221 Gene3D G3DSA:1.10.4190.10 3 200 6.3E-44 T 11-10-2018 IPR038277 UreF domain superfamily AMD27_02130 f4269c7d4856bc82a341362de1387fd9 221 Hamap MF_01385 Urease accessory protein UreF [ureF]. 8 221 26.549 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMD27_02130 f4269c7d4856bc82a341362de1387fd9 221 Pfam PF01730 UreF 40 179 3.8E-28 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMD27_02130 f4269c7d4856bc82a341362de1387fd9 221 PIRSF PIRSF009467 5 221 6.4E-54 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 Gene3D G3DSA:3.40.50.300 57 305 2.5E-62 T 11-10-2018 AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 SUPERFAMILY SSF52540 60 295 7.39E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 SMART SM00382 84 279 8.9E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 60 307 3.2E-122 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 Pfam PF00005 ABC transporter 76 231 1.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_05590 bfea1d44c8f0ff48a0f68472b10d21ba 307 ProSitePatterns PS00211 ABC transporters family signature. 204 218 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 SUPERFAMILY SSF53383 3 391 2.04E-103 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 405 7.6E-208 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 PIRSF PIRSF005572 2 385 4.3E-125 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 Gene3D G3DSA:3.90.1150.10 5 377 2.7E-155 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 Pfam PF00266 Aminotransferase class-V 5 369 5.1E-80 T 11-10-2018 IPR000192 Aminotransferase class V domain AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 396 53.299 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMD27_08745 3b84b437eaab5eb36f8805352304f56e 405 Gene3D G3DSA:3.40.640.10 16 263 2.7E-155 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 4 262 43.414 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Gene3D G3DSA:1.20.1180.10 196 262 3.1E-23 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 SUPERFAMILY SSF51161 3 262 5.94E-80 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 152 180 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Gene3D G3DSA:2.160.10.10 1 195 5.3E-61 T 11-10-2018 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 7 38 6.8E-9 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 143 174 0.0013 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 142 4.7E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 PIRSF PIRSF000456 4 262 1.0E-104 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 179 261 6.7E-25 T 11-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 AMD27_08855 30ff8556522b5eea32e26ecea488d5fc 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 7 261 2.0E-98 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 SUPERFAMILY SSF52788 3 142 2.22E-39 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 Gene3D G3DSA:3.40.50.2300 2 142 1.3E-44 T 11-10-2018 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 138 5.4E-37 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 SMART SM00226 4 141 3.0E-51 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 76 91 2.1E-17 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 2.1E-17 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 98 111 2.1E-17 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 42 58 2.1E-17 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_00355 14f92fd25388e05805c859cd258eca7d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 2.1E-17 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 PIRSF PIRSF017184 3 508 5.0E-98 T 11-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Pfam PF01256 Carbohydrate kinase 240 502 4.8E-41 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 224 508 2.0E-52 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 217 507 19.281 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 SUPERFAMILY SSF53613 223 507 1.53E-56 T 11-10-2018 IPR029056 Ribokinase-like AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Gene3D G3DSA:3.40.50.10260 2 215 3.8E-50 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Pfam PF03853 YjeF-related protein N-terminus 27 187 1.1E-36 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 7 208 18.63 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 448 458 - T 11-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 18 204 3.4E-33 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 SUPERFAMILY SSF64153 5 239 1.7E-52 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMD27_09400 dab3b2c55d980c8cdfbee4781acd67b6 508 Gene3D G3DSA:3.40.1190.20 222 508 2.0E-67 T 11-10-2018 IPR029056 Ribokinase-like AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 25.462 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 PIRSF PIRSF029827 1 90 1.5E-37 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 Gene3D G3DSA:1.10.3880.10 1 90 5.7E-34 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 1.0E-33 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 SUPERFAMILY SSF111148 1 88 4.05E-35 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 AMD27_01100 2c6b5e5fa16bac91dd287a1850722891 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 2.5E-38 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Gene3D G3DSA:3.40.50.970 1 180 2.1E-44 T 11-10-2018 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 322 6.4E-23 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 526 1.3E-29 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 SUPERFAMILY SSF52467 159 331 2.05E-31 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Gene3D G3DSA:3.40.50.970 359 535 1.2E-43 T 11-10-2018 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 SUPERFAMILY SSF52518 3 179 5.4E-40 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 175 8.8E-43 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 Gene3D G3DSA:3.40.50.1220 186 353 2.0E-28 T 11-10-2018 AMD27_04000 7950a6ab2437d3b729c269b333d463ec 546 SUPERFAMILY SSF52518 362 532 1.16E-43 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 Gene3D G3DSA:1.20.1560.10 2 336 9.7E-35 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 SMART SM00382 374 559 4.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 Pfam PF00664 ABC transporter transmembrane region 28 308 7.1E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 SUPERFAMILY SSF90123 24 337 2.75E-33 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 Gene3D G3DSA:3.40.50.300 337 568 4.7E-47 T 11-10-2018 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 Pfam PF00005 ABC transporter 365 515 9.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_05405 fa9de2aa2992894d815306f472be71c3 569 SUPERFAMILY SSF52540 341 555 1.24E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 SUPERFAMILY SSF56266 14 403 6.02E-137 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 31 404 4.0E-175 T 11-10-2018 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 Gene3D G3DSA:3.60.70.12 7 276 6.7E-87 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 Gene3D G3DSA:3.10.20.340 277 406 5.6E-45 T 11-10-2018 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 12 406 1.3E-120 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 Pfam PF01960 ArgJ family 20 406 1.6E-140 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMD27_03210 1478aa055c55a52245e6d8d28e554947 406 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 406 149.126 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMD27_10540 bd559d82deb38233b2a5d51a8f600b30 161 SUPERFAMILY SSF55811 3 147 1.12E-27 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_10540 bd559d82deb38233b2a5d51a8f600b30 161 Pfam PF00293 NUDIX domain 8 125 7.2E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_10540 bd559d82deb38233b2a5d51a8f600b30 161 Gene3D G3DSA:3.90.79.10 1 153 9.6E-37 T 11-10-2018 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 PRINTS PR00618 DksA/TraR zinc finger signature 150 162 8.5E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AMD27_01065 2062bc3da80418376343c3fa1b712091 175 PRINTS PR00618 DksA/TraR zinc finger signature 138 149 8.5E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AMD27_01065 2062bc3da80418376343c3fa1b712091 175 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 52 174 29.194 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 56 164 4.5E-51 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 134 167 1.1E-11 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 Gene3D G3DSA:1.20.120.910 45 174 9.9E-37 T 11-10-2018 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 SUPERFAMILY SSF57716 135 172 3.28E-10 T 11-10-2018 AMD27_01065 2062bc3da80418376343c3fa1b712091 175 SUPERFAMILY SSF109635 39 134 5.75E-35 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily AMD27_01065 2062bc3da80418376343c3fa1b712091 175 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 138 162 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 3.1E-11 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 128 146 3.1E-11 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 3.1E-11 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.1E-11 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Gene3D G3DSA:3.50.50.60 3 320 3.6E-73 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 SUPERFAMILY SSF55424 342 454 4.47E-25 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 448 3.6E-17 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Gene3D G3DSA:1.10.287.990 33 101 3.6E-73 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 318 2.1E-35 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 299 306 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 131 140 5.2E-35 T 11-10-2018 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Gene3D G3DSA:3.30.390.30 339 457 9.0E-37 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 PIRSF PIRSF000350 1 456 7.2E-58 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 SUPERFAMILY SSF51905 1 370 1.24E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13710 0ff0ed632fe87e7328bfedb8d4da105f 457 Gene3D G3DSA:3.50.50.60 140 261 3.6E-73 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 18 1373 19.027 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:1.10.40.90 379 421 2.1E-20 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:1.10.274.100 495 645 3.7E-42 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:2.40.50.100 953 1027 1.3E-25 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 349 389 1.3E-7 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 490 5.3E-28 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 SUPERFAMILY SSF64484 21 1362 0.0 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:1.10.150.390 1312 1373 1.9E-27 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF04998 RNA polymerase Rpb1, domain 5 771 1312 3.6E-77 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:2.40.50.100 1028 1122 2.2E-18 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF05000 RNA polymerase Rpb1, domain 4 679 768 1.6E-19 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 25 1362 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF04983 RNA polymerase Rpb1, domain 3 494 649 2.2E-29 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Pfam PF04997 RNA polymerase Rpb1, domain 1 21 347 4.5E-89 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:2.40.50.100 1147 1211 1.0E-63 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:1.10.132.30 646 795 2.6E-66 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 Gene3D G3DSA:1.10.1790.20 1131 1310 1.0E-63 T 11-10-2018 AMD27_01245 425466d98e6add742a4652dd721b1203 1397 SMART SM00663 240 519 3.4E-179 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_15835 8f456af5bad1d3722d8853e93bdf45c2 132 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 74 127 2.0E-20 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_15835 8f456af5bad1d3722d8853e93bdf45c2 132 Pfam PF11776 Nickel/cobalt transporter regulator 79 127 6.0E-15 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_15835 8f456af5bad1d3722d8853e93bdf45c2 132 Gene3D G3DSA:3.10.450.160 49 132 1.5E-13 T 11-10-2018 AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 Pfam PF14497 Glutathione S-transferase, C-terminal domain 153 210 1.4E-4 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 SUPERFAMILY SSF47616 147 204 7.38E-8 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 Gene3D G3DSA:3.40.30.10 1 103 2.2E-14 T 11-10-2018 AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 Gene3D G3DSA:1.20.1050.10 133 218 5.7E-8 T 11-10-2018 AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 SUPERFAMILY SSF52833 1 98 5.12E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_09490 6edf4211a6ced6e793b01474192e0549 254 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 76 5.2E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Gene3D G3DSA:1.10.8.60 315 423 6.4E-38 T 11-10-2018 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 6 409 3.3E-205 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 SUPERFAMILY SSF57716 9 44 1.71E-10 T 11-10-2018 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Gene3D G3DSA:3.40.50.300 54 314 4.4E-111 T 11-10-2018 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 391 4.4E-15 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Gene3D G3DSA:3.30.50.30 2 47 9.1E-17 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 SMART SM01086 316 410 2.4E-32 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 SMART SM00994 8 47 1.4E-19 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 SUPERFAMILY SSF52540 60 402 1.0E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 SMART SM00382 111 332 1.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 1.0E-50 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 414 52.196 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMD27_02375 d057dd8085324a13f0e2d59743ffad4a 436 Pfam PF06689 ClpX C4-type zinc finger 9 45 1.8E-17 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 SUPERFAMILY SSF102735 1 128 4.45E-35 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Gene3D G3DSA:3.30.70.1050 1 114 6.1E-35 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 PIRSF PIRSF003095 1 440 3.4E-123 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Gene3D G3DSA:1.10.3120.10 115 423 2.0E-92 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Hamap MF_00303 Trigger factor [tig]. 1 424 20.974 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 TIGRFAM TIGR00115 tig: trigger factor 12 418 2.1E-136 T 11-10-2018 IPR005215 Trigger factor GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 418 1.5E-35 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 2.9E-40 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 234 8.3E-16 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 Gene3D G3DSA:3.10.50.40 148 244 2.0E-92 T 11-10-2018 AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 SUPERFAMILY SSF109998 246 435 5.1E-43 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMD27_02365 8a8152ad69b4bbec8ba28bbbf96c0a37 444 SUPERFAMILY SSF54534 130 245 1.26E-32 T 11-10-2018 AMD27_17645 c8d4095f6c4d3a2a7d2a5e787b926739 140 Pfam PF11672 zinc-finger-containing domain 10 101 5.6E-12 T 11-10-2018 IPR021686 Protein of unkown function DUF3268 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 Gene3D G3DSA:2.40.500.20 90 207 4.1E-41 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PIRSF PIRSF000349 1 208 1.2E-80 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 5 88 1.2E-33 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 SUPERFAMILY SSF46609 3 88 2.36E-35 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 Gene3D G3DSA:1.10.287.990 21 88 3.6E-26 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 3.7E-36 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 SUPERFAMILY SSF54719 90 200 1.01E-41 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 7.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 7.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 7.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PRINTS PR01703 Manganese superoxide dismutase signature 71 84 7.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 7.3E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_11195 72baa5478c1e019bc9b04841e9c211b4 208 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMD27_16555 df620c9559526b995d7e1d3172877055 221 Gene3D G3DSA:2.40.50.90 9 137 8.3E-13 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily AMD27_16555 df620c9559526b995d7e1d3172877055 221 SUPERFAMILY SSF50199 9 131 1.16E-15 T 11-10-2018 AMD27_16555 df620c9559526b995d7e1d3172877055 221 Pfam PF00565 Staphylococcal nuclease homologue 48 129 3.2E-6 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMD27_16555 df620c9559526b995d7e1d3172877055 221 SMART SM00318 10 130 0.0012 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Gene3D G3DSA:1.10.486.10 384 553 1.6E-117 T 11-10-2018 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 SUPERFAMILY SSF52540 5 647 1.03E-156 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 5 678 38.688 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Gene3D G3DSA:3.40.50.300 281 641 1.6E-117 T 11-10-2018 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 272 1.5E-72 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Gene3D G3DSA:1.10.10.160 112 188 1.5E-91 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Gene3D G3DSA:3.40.50.300 8 272 1.5E-91 T 11-10-2018 AMD27_03610 e673ca3083eb8f145a4ef95d68dc6674 679 Pfam PF13361 UvrD-like helicase C-terminal domain 278 622 3.5E-70 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 Pfam PF02954 Bacterial regulatory protein, Fis family 44 83 3.2E-15 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 50 67 1.3E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 67 87 1.3E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PIRSF PIRSF002097 1 87 5.4E-35 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 46 58 2.0E-9 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 31 46 2.0E-9 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 15 31 2.0E-9 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 Gene3D G3DSA:1.10.10.60 2 86 7.0E-27 T 11-10-2018 AMD27_09895 9beb2be0ff7814b76031033622824e1f 89 SUPERFAMILY SSF46689 15 86 6.27E-22 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 Gene3D G3DSA:3.40.1160.10 14 297 1.5E-88 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 Gene3D G3DSA:3.40.630.30 298 450 1.6E-37 T 11-10-2018 AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 Pfam PF00696 Amino acid kinase family 33 272 2.4E-24 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 16 450 3.6E-177 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 SUPERFAMILY SSF55729 302 426 2.96E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 PIRSF PIRSF000423 6 450 2.7E-189 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 Pfam PF00583 Acetyltransferase (GNAT) family 328 410 1.1E-10 T 11-10-2018 IPR000182 GNAT domain AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 SUPERFAMILY SSF53633 13 297 3.63E-68 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_15845 b10976e979f82e918e5bfee6fcc5b2e5 450 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 450 200.574 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMD27_11235 e7f112f027b2bb90bcdb4aef22da1353 414 PIRSF PIRSF029171 7 414 9.1E-70 T 11-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 AMD27_11235 e7f112f027b2bb90bcdb4aef22da1353 414 Pfam PF12146 Serine aminopeptidase, S33 113 212 5.4E-7 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_11235 e7f112f027b2bb90bcdb4aef22da1353 414 Gene3D G3DSA:3.40.50.1820 302 414 8.2E-8 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_11235 e7f112f027b2bb90bcdb4aef22da1353 414 Gene3D G3DSA:3.40.50.1820 21 261 9.1E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_11235 e7f112f027b2bb90bcdb4aef22da1353 414 SUPERFAMILY SSF53474 70 411 4.42E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05640 3f41e480f76a9be527a68d1723c437fc 93 SUPERFAMILY SSF46689 46 90 3.58E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05640 3f41e480f76a9be527a68d1723c437fc 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_00430 26827740bca7cfba8505ae60bb0cb55f 210 Pfam PF02397 Bacterial sugar transferase 2 176 2.1E-64 T 11-10-2018 IPR003362 Bacterial sugar transferase AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM01231 946 1083 1.4E-8 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00260 1261 1407 1.5E-15 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF00072 Response regulator receiver domain 1435 1546 3.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00387 1128 1269 1.8E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF01627 Hpt domain 784 849 1.2E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF01627 Hpt domain 25 106 6.2E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF01627 Hpt domain 230 292 6.3E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF01627 Hpt domain 568 657 1.8E-14 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:1.20.120.160 782 906 1.5E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF47226 784 873 7.07E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF47226 565 686 6.15E-24 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00073 23 120 4.8E-6 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00073 226 320 0.14 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00073 779 876 6.9E-4 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00073 566 663 1.6E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:3.40.50.12740 1433 1553 8.3E-39 T 11-10-2018 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF01584 CheW-like domain 1274 1409 4.6E-16 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1173 1187 4.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1213 1223 4.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1253 1266 4.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1229 1247 4.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF47226 23 132 2.36E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:2.40.50.180 1292 1361 2.5E-30 T 11-10-2018 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:2.30.30.40 1269 1402 2.5E-30 T 11-10-2018 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF47226 229 329 6.8E-13 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:1.20.120.160 226 350 7.2E-13 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:1.20.120.160 16 149 5.0E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1132 1267 3.3E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF52172 1434 1551 3.42E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF55874 1086 1266 1.19E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:1.20.120.160 566 705 8.4E-23 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 Gene3D G3DSA:3.30.565.10 1082 1268 3.1E-54 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SMART SM00448 1433 1546 2.7E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12115 de2f5e778f62508235c21b4ece10453e 1553 SUPERFAMILY SSF50341 1268 1405 7.72E-18 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 SUPERFAMILY SSF50346 104 179 5.23E-17 T 11-10-2018 IPR011033 PRC-barrel-like superfamily AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 182 21.816 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 Gene3D G3DSA:2.30.30.240 99 182 3.3E-31 T 11-10-2018 AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 Pfam PF05239 PRC-barrel domain 101 177 1.3E-6 T 11-10-2018 IPR027275 PRC-barrel domain AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 12 179 5.9E-44 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 SUPERFAMILY SSF50447 10 98 1.94E-21 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 Pfam PF01782 RimM N-terminal domain 13 95 7.4E-23 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 AMD27_01670 91b344a5302020bcadaab225a70b18aa 182 Gene3D G3DSA:2.40.30.60 1 98 8.5E-36 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 93 507 5.9E-117 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 SUPERFAMILY SSF53901 91 364 1.45E-57 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 Gene3D G3DSA:3.40.47.10 81 508 4.7E-102 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 Pfam PF02803 Thiolase, C-terminal domain 385 508 2.9E-29 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 Pfam PF00108 Thiolase, N-terminal domain 91 358 8.4E-50 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_07140 c24c3b55b22e06aa9363a0e1347f0c05 508 SUPERFAMILY SSF53901 364 508 4.72E-28 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_14135 f6db1102e94276056e815d61966904b2 291 Pfam PF13622 Thioesterase-like superfamily 33 283 7.1E-50 T 11-10-2018 AMD27_14135 f6db1102e94276056e815d61966904b2 291 SUPERFAMILY SSF54637 114 284 7.46E-44 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_14135 f6db1102e94276056e815d61966904b2 291 Gene3D G3DSA:3.10.129.90 2 288 3.9E-92 T 11-10-2018 AMD27_14135 f6db1102e94276056e815d61966904b2 291 SUPERFAMILY SSF54637 5 112 3.84E-36 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00671 182 217 2.1E-10 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00671 144 179 0.0065 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00671 218 253 1.1E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00671 76 111 1.9E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00671 112 143 7.5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Pfam PF08238 Sel1 repeat 77 111 4.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Pfam PF08238 Sel1 repeat 219 253 3.2E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Pfam PF08238 Sel1 repeat 182 217 2.1E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Pfam PF13424 Tetratricopeptide repeat 116 179 1.6E-9 T 11-10-2018 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Gene3D G3DSA:1.25.40.10 25 123 7.6E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 Gene3D G3DSA:1.25.40.10 124 266 1.3E-42 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00028 150 181 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00028 182 219 360.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00028 44 77 470.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SMART SM00028 112 145 0.013 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SUPERFAMILY SSF81901 40 123 2.14E-13 T 11-10-2018 AMD27_13065 361b937d6fcd4f86e4507bfb9a623de4 270 SUPERFAMILY SSF81901 117 263 7.85E-38 T 11-10-2018 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 309 315 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 Pfam PF02384 N-6 DNA Methylase 180 497 2.5E-64 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 SUPERFAMILY SSF53335 9 544 1.1E-97 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 Gene3D G3DSA:3.40.50.150 180 486 7.7E-66 T 11-10-2018 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 232 246 9.1E-21 T 11-10-2018 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 306 318 9.1E-21 T 11-10-2018 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 351 375 9.1E-21 T 11-10-2018 AMD27_15685 1591109925ecbc0db6055a88eb2df0ed 545 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 202 218 9.1E-21 T 11-10-2018 AMD27_12550 2b99a9bca1e10e20c7151ff04fb6bd4d 231 SUPERFAMILY SSF53474 6 230 4.02E-9 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12550 2b99a9bca1e10e20c7151ff04fb6bd4d 231 Gene3D G3DSA:3.40.50.1820 5 228 6.0E-13 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 SUPERFAMILY SSF103473 16 432 5.23E-66 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 302 317 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 Pfam PF07690 Major Facilitator Superfamily 277 429 1.8E-10 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 27 419 4.6E-138 T 11-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 Pfam PF00083 Sugar (and other) transporter 21 230 3.5E-24 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_03055 a185fb82bd8bff1b91dbe96ebf55487c 437 Gene3D G3DSA:1.20.1250.20 17 436 1.9E-64 T 11-10-2018 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 SUPERFAMILY SSF51735 100 287 1.59E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 SUPERFAMILY SSF52283 2 133 3.59E-27 T 11-10-2018 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 Gene3D G3DSA:3.40.50.720 97 286 2.1E-101 T 11-10-2018 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 286 3.9E-55 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 Gene3D G3DSA:3.40.50.720 5 313 2.1E-101 T 11-10-2018 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 318 1.2E-26 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMD27_10045 b9aedb83ad1472cf2faa84031d23bbcd 321 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 176 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMD27_15075 fdaef97209eeda8946c173f2a2f2ccf5 369 SUPERFAMILY SSF51679 7 356 5.5E-90 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_15075 fdaef97209eeda8946c173f2a2f2ccf5 369 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 9 357 1.7E-183 T 11-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 AMD27_15075 fdaef97209eeda8946c173f2a2f2ccf5 369 Gene3D G3DSA:3.20.20.30 6 361 2.6E-108 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_15075 fdaef97209eeda8946c173f2a2f2ccf5 369 Pfam PF00296 Luciferase-like monooxygenase 10 329 5.2E-72 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 101 155 6.0E-25 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 22 181 25.207 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 SUPERFAMILY SSF143243 22 225 1.57E-58 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Gene3D G3DSA:1.10.645.20 210 595 1.6E-142 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 46 173 1.7E-40 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 325 595 1.3E-98 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 211 595 1.1E-161 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 248 259 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Gene3D G3DSA:3.30.460.80 7 153 9.7E-35 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 45 172 2.8E-39 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 134 155 - T 11-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 SUPERFAMILY SSF56762 221 595 3.01E-120 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 207 595 40.872 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12365 0b8eabbfb082470374e115722c6c90ec 595 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 13 595 68.793 T 11-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 SUPERFAMILY SSF158544 101 205 1.88E-28 T 11-10-2018 IPR038072 GspK, central domain superfamily AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 Gene3D G3DSA:3.30.1300.30 42 300 9.3E-67 T 11-10-2018 AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 Pfam PF03934 Type II secretion system (T2SS), protein K 32 306 1.5E-71 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 PIRSF PIRSF002786 1 314 4.5E-87 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 SUPERFAMILY SSF54523 37 307 5.96E-19 T 11-10-2018 AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 Gene3D G3DSA:1.10.40.60 208 275 9.3E-67 T 11-10-2018 IPR038072 GspK, central domain superfamily AMD27_09610 cb974d1d98236b882e2b6e2ad53ab8ad 315 Gene3D G3DSA:1.10.40.60 99 207 9.3E-67 T 11-10-2018 IPR038072 GspK, central domain superfamily AMD27_08245 13879c14a01449e5efdcf7d0b401edc9 257 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 84 249 2.5E-16 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMD27_08245 13879c14a01449e5efdcf7d0b401edc9 257 Gene3D G3DSA:3.40.630.40 80 255 5.4E-48 T 11-10-2018 AMD27_08245 13879c14a01449e5efdcf7d0b401edc9 257 SUPERFAMILY SSF53187 83 253 3.14E-18 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Pfam PF00204 DNA gyrase B 218 385 1.2E-39 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 SMART SM00387 26 173 8.3E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 624 45.955 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Pfam PF01751 Toprim domain 413 512 2.4E-12 T 11-10-2018 IPR006171 TOPRIM domain AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 580 594 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 6.2E-93 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 620 9.0E-286 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 SUPERFAMILY SSF55874 3 215 1.22E-61 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 554 616 1.2E-21 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Gene3D G3DSA:3.30.230.10 216 388 2.7E-52 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 414 428 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 497 514 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 30 45 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 517 529 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 558 574 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 108 122 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 65 78 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 266 279 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 PRINTS PR00418 DNA topoisomerase II family signature 479 495 6.5E-60 T 11-10-2018 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Gene3D G3DSA:3.40.50.670 389 619 1.0E-87 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 SMART SM00433 33 620 7.1E-202 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 SUPERFAMILY SSF54211 217 382 4.93E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Gene3D G3DSA:3.30.565.10 1 215 1.6E-72 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 SUPERFAMILY SSF56719 388 617 1.26E-74 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_15440 ecc4614c11bd205ab764dbbed41bec56 626 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 170 1.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-16 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-16 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-16 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 SUPERFAMILY SSF54999 5 101 1.96E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-44 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 SMART SM01403 7 101 1.4E-54 T 11-10-2018 IPR027486 Ribosomal protein S10 domain AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.3E-35 T 11-10-2018 IPR027486 Ribosomal protein S10 domain AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.156 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14085 3f99a10d4b2410103bb2630cdb18871d 103 Gene3D G3DSA:3.30.70.600 1 103 1.2E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 SUPERFAMILY SSF47917 384 512 2.01E-46 T 11-10-2018 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 SUPERFAMILY SSF52540 97 382 3.36E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 3.0E-72 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 512 1.0E-248 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.404 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 SUPERFAMILY SSF50615 11 95 2.15E-27 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Gene3D G3DSA:2.40.30.20 2 94 3.0E-31 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Gene3D G3DSA:1.20.150.20 384 514 2.8E-47 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 7.0E-14 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Gene3D G3DSA:3.40.50.300 95 383 1.8E-127 T 11-10-2018 AMD27_00645 135f8ca859c58bc7204872697cbcef92 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 2.0E-45 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 7.1E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 7.1E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 7.1E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 29.262 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 SUPERFAMILY SSF47729 4 93 3.83E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 Pfam PF00216 Bacterial DNA-binding protein 4 92 1.3E-29 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 SMART SM00411 4 93 2.0E-37 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 Gene3D G3DSA:4.10.520.10 2 97 5.3E-34 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_02785 dadc633612c1746ed949893ca2fdaae6 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 94 4.9E-43 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 2.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 2.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 2.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 2.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 126 6.1E-33 T 11-10-2018 IPR010627 Peptidase A24A, N-terminal AMD27_01450 c4d3c4c7684199880f4576110e18e21c 286 Pfam PF01478 Type IV leader peptidase family 138 247 1.5E-21 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMD27_08740 c73b4799d97baf8d42067549c385bd75 157 Pfam PF02082 Transcriptional regulator 1 83 7.3E-30 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMD27_08740 c73b4799d97baf8d42067549c385bd75 157 SUPERFAMILY SSF46785 2 132 3.76E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_08740 c73b4799d97baf8d42067549c385bd75 157 Gene3D G3DSA:1.10.10.10 1 144 3.5E-52 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08740 c73b4799d97baf8d42067549c385bd75 157 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMD27_08740 c73b4799d97baf8d42067549c385bd75 157 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 5.4E-46 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SMART SM01018 658 741 8.6E-41 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 TIGRFAM TIGR02082 metH: methionine synthase 12 1195 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SUPERFAMILY SSF82282 6 396 6.41E-116 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:1.10.288.10 939 1095 2.8E-126 T 11-10-2018 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SUPERFAMILY SSF51717 353 621 1.27E-86 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:3.10.196.10 913 1225 2.8E-126 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:3.20.20.330 2 336 3.1E-125 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:3.20.20.20 337 645 4.2E-128 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:1.10.1240.10 650 738 4.5E-39 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SUPERFAMILY SSF56507 907 1226 4.05E-115 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Gene3D G3DSA:3.40.50.280 744 896 1.4E-53 T 11-10-2018 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 941 1211 1.2E-109 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Pfam PF02574 Homocysteine S-methyltransferase 16 322 2.9E-76 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Pfam PF02607 B12 binding domain 660 733 2.0E-22 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SUPERFAMILY SSF47644 653 740 4.32E-27 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Pfam PF00809 Pterin binding enzyme 357 595 8.7E-55 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 Pfam PF02310 B12 binding domain 749 841 4.3E-18 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 SUPERFAMILY SSF52242 744 895 3.53E-43 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMD27_04085 e8d407ee9ad72def2ac8951f30352032 1231 PIRSF PIRSF000381 1 1198 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 Gene3D G3DSA:3.50.50.60 247 372 1.2E-89 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 137 418 7.4E-56 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 Gene3D G3DSA:3.50.50.60 139 437 1.2E-89 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 366 380 6.6E-10 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 412 6.6E-10 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 159 6.6E-10 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 304 6.6E-10 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 157 3.2E-18 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 390 412 3.2E-18 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 365 381 3.2E-18 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 252 3.2E-18 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 297 3.2E-18 T 11-10-2018 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 Pfam PF13806 Rieske-like [2Fe-2S] domain 14 117 1.9E-36 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 SUPERFAMILY SSF51905 276 439 1.23E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 14 117 2.4E-33 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 SUPERFAMILY SSF51905 134 324 7.95E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 Gene3D G3DSA:2.102.10.10 8 119 2.7E-34 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_07765 e92a5f82a14d1c66011850e3929cbcf2 544 SUPERFAMILY SSF50022 14 126 9.08E-35 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Gene3D G3DSA:2.40.30.10 571 689 7.5E-39 T 11-10-2018 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 323 372 8.2E-11 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Pfam PF00009 Elongation factor Tu GTP binding domain 403 558 1.2E-34 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 897 16.511 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 SUPERFAMILY SSF46955 3 51 6.04E-7 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 SUPERFAMILY SSF50447 572 654 6.63E-23 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Gene3D G3DSA:3.40.50.300 397 570 1.4E-69 T 11-10-2018 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Gene3D G3DSA:3.40.50.10050 693 800 4.1E-34 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 98 3.4E-13 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Pfam PF11987 Translation-initiation factor 2 684 789 1.8E-33 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Gene3D G3DSA:2.40.30.10 801 898 1.1E-27 T 11-10-2018 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 SUPERFAMILY SSF52156 677 806 1.83E-33 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 SUPERFAMILY SSF52540 395 567 6.04E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 402 558 1.3E-32 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 318 899 9.8E-242 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 ProSitePatterns PS01176 Initiation factor 2 signature. 850 872 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 SUPERFAMILY SSF50447 801 897 9.98E-28 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_01510 d3ec77d5a73965dd876be53fe34f66c3 899 Gene3D G3DSA:3.30.56.50 2 51 5.1E-5 T 11-10-2018 AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 SUPERFAMILY SSF51735 2 245 2.79E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 Gene3D G3DSA:3.40.50.720 1 278 2.5E-70 T 11-10-2018 AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.7E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.7E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.7E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.7E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 5.7E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 Pfam PF00106 short chain dehydrogenase 2 206 6.0E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09265 bf28e230b6aa3ce7b72d2f559b742538 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 5.3E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 Pfam PF00814 Glycoprotease family 25 305 2.3E-105 T 11-10-2018 IPR000905 Gcp-like domain AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 11-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 Gene3D G3DSA:3.30.420.40 129 291 1.9E-127 T 11-10-2018 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 329 63.663 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 304 1.2E-117 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 SUPERFAMILY SSF53067 3 121 4.32E-31 T 11-10-2018 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 312 1.3E-133 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 SUPERFAMILY SSF53067 101 307 1.62E-43 T 11-10-2018 AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 261 270 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.2E-50 T 11-10-2018 IPR017861 Kae1/TsaD family AMD27_10015 fae66a039e3a548b3000d38de723a09f 338 Gene3D G3DSA:3.30.420.40 3 313 1.9E-127 T 11-10-2018 AMD27_11340 fd2cc0d7356e20c809a341376fc08f31 229 PIRSF PIRSF006232 2 225 6.8E-46 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMD27_11340 fd2cc0d7356e20c809a341376fc08f31 229 Gene3D G3DSA:2.60.120.10 9 228 2.1E-76 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_11340 fd2cc0d7356e20c809a341376fc08f31 229 Pfam PF02678 Pirin 15 119 1.9E-29 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMD27_11340 fd2cc0d7356e20c809a341376fc08f31 229 SUPERFAMILY SSF51182 5 227 6.44E-61 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_11340 fd2cc0d7356e20c809a341376fc08f31 229 Gene3D G3DSA:2.60.120.10 12 135 2.1E-76 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 Gene3D G3DSA:3.30.300.310 463 557 2.8E-32 T 11-10-2018 AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 Gene3D G3DSA:3.40.50.12780 12 462 5.3E-113 T 11-10-2018 AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 5.7E-19 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 Pfam PF00501 AMP-binding enzyme 31 466 1.8E-106 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_00865 506ddc064ad015938af255c4e51df7c5 557 SUPERFAMILY SSF56801 21 557 1.06E-147 T 11-10-2018 AMD27_10080 e610e7b0076ee071340ec64746baf1fc 380 PIRSF PIRSF015761 12 380 1.9E-12 T 11-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 AMD27_10080 e610e7b0076ee071340ec64746baf1fc 380 Gene3D G3DSA:3.30.420.380 7 165 8.3E-9 T 11-10-2018 AMD27_10080 e610e7b0076ee071340ec64746baf1fc 380 Pfam PF12693 GspL periplasmic domain 233 375 3.6E-7 T 11-10-2018 IPR025691 GspL periplasmic domain AMD27_10080 e610e7b0076ee071340ec64746baf1fc 380 Pfam PF05134 Type II secretion system (T2SS), protein L 26 166 6.2E-10 T 11-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain AMD27_10080 e610e7b0076ee071340ec64746baf1fc 380 SUPERFAMILY SSF53067 2 134 6.86E-11 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.1E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00149 Fumarate lyase superfamily signature 290 306 1.1E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00149 Fumarate lyase superfamily signature 246 273 1.1E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00149 Fumarate lyase superfamily signature 162 180 1.1E-30 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Gene3D G3DSA:1.10.40.30 375 448 2.6E-192 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 290 306 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 246 270 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 116 138 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 325 344 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 208 224 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 PRINTS PR00145 Argininosuccinate lyase family signature 157 177 7.9E-68 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Hamap MF_00006 Argininosuccinate lyase [argH]. 17 469 43.713 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Pfam PF14698 Argininosuccinate lyase C-terminal 378 447 2.2E-25 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 SUPERFAMILY SSF48557 18 470 4.71E-153 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Gene3D G3DSA:1.20.200.10 134 464 2.6E-192 T 11-10-2018 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Pfam PF00206 Lyase 21 315 4.4E-79 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 ProSitePatterns PS00163 Fumarate lyases signature. 290 299 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 Gene3D G3DSA:1.10.275.10 40 244 2.6E-192 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_01105 2ba21f2aba9368c3472a0c1d34ece6d4 476 TIGRFAM TIGR00838 argH: argininosuccinate lyase 18 471 3.7E-194 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_17250 0593cdc4d08aeee1c6a86ec9f1a05013 174 SUPERFAMILY SSF52058 4 166 1.63E-18 T 11-10-2018 AMD27_17250 0593cdc4d08aeee1c6a86ec9f1a05013 174 Gene3D G3DSA:3.80.10.10 3 173 3.9E-25 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 575 41.202 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Pfam PF03129 Anticodon binding domain 479 572 1.7E-18 T 11-10-2018 IPR004154 Anticodon-binding AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Pfam PF04073 Aminoacyl-tRNA editing domain 256 380 3.7E-20 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Gene3D G3DSA:3.90.960.10 240 393 1.8E-232 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 SUPERFAMILY SSF55826 218 394 7.85E-23 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Gene3D G3DSA:3.40.50.800 4 558 1.8E-232 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 SUPERFAMILY SSF55681 10 482 2.49E-104 T 11-10-2018 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 PIRSF PIRSF001535 1 575 1.0E-259 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 SUPERFAMILY SSF52954 467 573 6.8E-31 T 11-10-2018 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 463 1.3E-45 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 Gene3D G3DSA:3.30.930.10 11 469 1.8E-232 T 11-10-2018 AMD27_12155 81548e9d14a68ae4fe729d9a823d15f8 575 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 571 1.7E-246 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 SUPERFAMILY SSF52833 34 128 6.99E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 SUPERFAMILY SSF52833 141 259 2.17E-8 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 Gene3D G3DSA:3.40.30.10 29 130 1.2E-14 T 11-10-2018 AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 Gene3D G3DSA:3.40.30.10 157 259 1.4E-15 T 11-10-2018 AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 Pfam PF13417 Glutathione S-transferase, N-terminal domain 160 259 1.4E-10 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_08795 3d42f2036e3c8a0b95ba6950ebe727c7 259 Pfam PF13417 Glutathione S-transferase, N-terminal domain 36 111 4.7E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_15705 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15705 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_09125 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_09125 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_10680 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_10680 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_03715 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03715 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_10970 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_10970 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_04865 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_04865 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_12675 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_12675 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_15500 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15500 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_04375 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_04375 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_01925 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_01925 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_07685 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_07685 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_03835 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03835 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_05445 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05445 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_05620 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05620 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_03780 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03780 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_17240 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_17240 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_03100 5524590784533885c75865aa20aac8c3 124 SUPERFAMILY SSF46689 1 109 1.19E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03100 5524590784533885c75865aa20aac8c3 124 Pfam PF01710 Transposase 5 121 4.8E-7 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_03820 b782e3b93020b2ff202a0bfe300f732c 170 Gene3D G3DSA:2.60.200.60 4 85 6.0E-6 T 11-10-2018 AMD27_03820 b782e3b93020b2ff202a0bfe300f732c 170 Pfam PF05488 PAAR motif 8 78 2.8E-14 T 11-10-2018 IPR008727 PAAR motif AMD27_09560 443d2659a676681547a5edcdca766964 230 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 54 67 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09560 443d2659a676681547a5edcdca766964 230 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 220 2.0E-48 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09560 443d2659a676681547a5edcdca766964 230 SMART SM00934 2 222 1.6E-95 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09560 443d2659a676681547a5edcdca766964 230 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 1 227 36.32 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09560 443d2659a676681547a5edcdca766964 230 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 4 222 1.3E-59 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09560 443d2659a676681547a5edcdca766964 230 Gene3D G3DSA:3.20.20.70 1 229 3.3E-82 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_09560 443d2659a676681547a5edcdca766964 230 SUPERFAMILY SSF51366 2 225 7.54E-72 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 Pfam PF07670 Nucleoside recognition 283 374 2.5E-11 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 Pfam PF07670 Nucleoside recognition 451 588 1.4E-24 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 Pfam PF02421 Ferrous iron transport protein B 6 165 3.7E-56 T 11-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 Gene3D G3DSA:3.40.50.300 5 202 3.6E-43 T 11-10-2018 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 3.3E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 3.3E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 Pfam PF07664 Ferrous iron transport protein B C terminus 394 446 6.4E-14 T 11-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 AMD27_01035 647e602fee0f46d2b20162f87a291cc6 618 SUPERFAMILY SSF52540 5 168 2.59E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 SUPERFAMILY SSF51366 5 217 1.05E-75 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 Gene3D G3DSA:3.20.20.70 6 223 1.0E-83 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 PIRSF PIRSF001461 1 228 7.9E-103 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 137 159 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 217 1.2E-97 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMD27_03440 573dccb3ff14606a8025e767e59d165f 228 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 204 3.6E-89 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMD27_08150 4adf2593c3c8c68e86c5d0e5770e480b 373 Gene3D G3DSA:3.30.200.20 15 116 5.2E-25 T 11-10-2018 AMD27_08150 4adf2593c3c8c68e86c5d0e5770e480b 373 Gene3D G3DSA:3.90.1200.10 120 356 4.6E-62 T 11-10-2018 AMD27_08150 4adf2593c3c8c68e86c5d0e5770e480b 373 SUPERFAMILY SSF56112 15 342 2.72E-57 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_08150 4adf2593c3c8c68e86c5d0e5770e480b 373 Pfam PF01636 Phosphotransferase enzyme family 37 264 1.2E-40 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMD27_07625 14575f4b78c6d1254700256a78d67cbb 533 SUPERFAMILY SSF52096 25 267 1.11E-70 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_07625 14575f4b78c6d1254700256a78d67cbb 533 Gene3D G3DSA:3.90.226.10 1 271 8.3E-98 T 11-10-2018 AMD27_07625 14575f4b78c6d1254700256a78d67cbb 533 SUPERFAMILY SSF52096 237 515 7.82E-84 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_07625 14575f4b78c6d1254700256a78d67cbb 533 Pfam PF01039 Carboxyl transferase domain 48 523 2.0E-148 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMD27_07625 14575f4b78c6d1254700256a78d67cbb 533 Gene3D G3DSA:3.90.226.10 272 533 6.9E-100 T 11-10-2018 AMD27_00995 693334ddd77886b7185b43910288c968 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00995 693334ddd77886b7185b43910288c968 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00995 693334ddd77886b7185b43910288c968 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00995 693334ddd77886b7185b43910288c968 211 SMART SM00448 2 115 3.5E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_00995 693334ddd77886b7185b43910288c968 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00995 693334ddd77886b7185b43910288c968 211 SMART SM00421 146 203 2.6E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00995 693334ddd77886b7185b43910288c968 211 SUPERFAMILY SSF52172 3 175 1.22E-33 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_00995 693334ddd77886b7185b43910288c968 211 Pfam PF00072 Response regulator receiver domain 4 116 2.6E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_00995 693334ddd77886b7185b43910288c968 211 Gene3D G3DSA:3.40.50.12740 2 209 4.3E-60 T 11-10-2018 AMD27_00995 693334ddd77886b7185b43910288c968 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 2.4E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 495 506 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 4 594 6.7E-251 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 SUPERFAMILY SSF52016 407 594 7.3E-60 T 11-10-2018 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 SUPERFAMILY SSF143975 2 406 2.88E-132 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 594 43.029 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 Pfam PF00920 Dehydratase family 20 591 2.4E-221 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 108 118 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMD27_00190 00f0f96604f19546903dcb53af226e28 595 Gene3D G3DSA:3.50.30.80 407 559 2.1E-54 T 11-10-2018 AMD27_05190 2532c3199119b9594b8c179ee26ce609 215 Gene3D G3DSA:1.20.1510.10 18 199 5.4E-9 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMD27_05190 2532c3199119b9594b8c179ee26ce609 215 SUPERFAMILY SSF161111 16 198 2.48E-34 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMD27_05190 2532c3199119b9594b8c179ee26ce609 215 Pfam PF01545 Cation efflux family 22 197 1.5E-12 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMD27_00280 c39a0456af208f2c86d78634e8e44fea 216 Gene3D G3DSA:1.10.10.60 1 52 2.7E-25 T 11-10-2018 AMD27_00280 c39a0456af208f2c86d78634e8e44fea 216 SUPERFAMILY SSF46689 2 75 2.43E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00280 c39a0456af208f2c86d78634e8e44fea 216 Gene3D G3DSA:1.10.357.10 53 215 3.5E-34 T 11-10-2018 AMD27_00280 c39a0456af208f2c86d78634e8e44fea 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 2.5E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Pfam PF02954 Bacterial regulatory protein, Fis family 439 477 3.9E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Pfam PF00072 Response regulator receiver domain 6 115 1.5E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Gene3D G3DSA:1.10.10.60 390 480 1.8E-23 T 11-10-2018 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Gene3D G3DSA:3.40.50.300 127 313 3.0E-66 T 11-10-2018 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 SUPERFAMILY SSF52172 1 187 1.99E-44 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 477 7.1E-225 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Gene3D G3DSA:3.40.50.2300 1 124 6.0E-40 T 11-10-2018 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 480 4.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 460 4.6E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 SMART SM00448 4 115 7.0E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 SUPERFAMILY SSF52540 141 385 4.4E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Gene3D G3DSA:1.10.8.60 315 389 1.3E-17 T 11-10-2018 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 Pfam PF00158 Sigma-54 interaction domain 142 309 1.5E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 SMART SM00382 162 305 2.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_08920 d8e4697f1205e9b7c7f8eabb7220931b 495 SUPERFAMILY SSF46689 405 480 4.48E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_08610 65a0bda5d90006e5350ab43f2b1e8b6a 464 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 294 457 1.1E-49 T 11-10-2018 IPR000160 GGDEF domain AMD27_08610 65a0bda5d90006e5350ab43f2b1e8b6a 464 SUPERFAMILY SSF55073 300 457 1.26E-43 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_08610 65a0bda5d90006e5350ab43f2b1e8b6a 464 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 454 7.2E-46 T 11-10-2018 IPR000160 GGDEF domain AMD27_08610 65a0bda5d90006e5350ab43f2b1e8b6a 464 Gene3D G3DSA:3.30.70.270 289 462 1.5E-51 T 11-10-2018 AMD27_08610 65a0bda5d90006e5350ab43f2b1e8b6a 464 SMART SM00267 284 458 3.9E-56 T 11-10-2018 IPR000160 GGDEF domain AMD27_02310 778c145103655d165a3737799f6f86f1 77 Pfam PF02416 mttA/Hcf106 family 4 49 8.3E-13 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMD27_02310 778c145103655d165a3737799f6f86f1 77 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 5.6E-19 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMD27_02310 778c145103655d165a3737799f6f86f1 77 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 70 20.221 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 SUPERFAMILY SSF52540 42 351 3.8E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 442 33.793 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 SMART SM00962 100 296 3.4E-112 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.2E-22 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Pfam PF02978 Signal peptide binding domain 329 429 4.5E-30 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Gene3D G3DSA:1.10.260.30 310 451 2.2E-36 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 SMART SM00963 1 86 8.0E-37 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Gene3D G3DSA:3.40.50.300 90 285 6.0E-122 T 11-10-2018 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 431 1.3E-175 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 4.3E-73 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 SMART SM00382 99 247 8.5E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 Gene3D G3DSA:1.20.120.140 5 305 6.0E-122 T 11-10-2018 AMD27_12625 87fa5f1b460b997204989660b01f9ad0 469 SUPERFAMILY SSF47446 298 432 2.49E-43 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMD27_11465 8c8ca1b333c03699f61063d518fc6bec 377 SUPERFAMILY SSF51695 36 367 8.89E-71 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMD27_11465 8c8ca1b333c03699f61063d518fc6bec 377 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 42 361 2.1E-48 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMD27_11465 8c8ca1b333c03699f61063d518fc6bec 377 Gene3D G3DSA:3.20.20.190 36 368 1.2E-104 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMD27_01375 52d7150eec1c7ae90fded19da101a99b 82 Gene3D G3DSA:1.20.120.1620 1 78 5.7E-9 T 11-10-2018 IPR038314 T6SS superfamily AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 119 129 - T 11-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 SUPERFAMILY SSF55486 17 157 4.15E-43 T 11-10-2018 AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 41 151 4.1E-34 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 Pfam PF02130 Uncharacterized protein family UPF0054 21 150 5.5E-36 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 154 22.866 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMD27_13800 06177db7f8346dfa9eeb7a7b6f75ea79 161 Gene3D G3DSA:3.40.390.30 2 161 1.4E-47 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 349 357 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PIRSF PIRSF038928 13 495 1.8E-185 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 SMART SM01060 24 406 1.3E-234 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 Pfam PF06628 Catalase-related immune-responsive 428 488 3.7E-18 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 Pfam PF00199 Catalase 24 403 7.2E-168 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 Gene3D G3DSA:2.40.180.10 20 505 1.9E-205 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 ProSitePatterns PS00438 Catalase proximal active site signature. 60 76 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 SUPERFAMILY SSF56634 10 497 8.37E-190 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 139 157 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 304 331 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 37 60 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 99 117 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 120 137 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_15575 00f1bcd2e5bd9360a8c6e9d670fbdd91 505 PRINTS PR00067 Catalase signature 336 362 1.3E-63 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 Pfam PF08479 POTRA domain, ShlB-type 71 150 3.1E-19 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 PIRSF PIRSF029745 3 568 4.5E-176 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 Gene3D G3DSA:3.10.20.310 53 150 1.4E-7 T 11-10-2018 AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 213 531 1.1E-106 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 Gene3D G3DSA:2.40.160.50 183 568 2.5E-107 T 11-10-2018 AMD27_11005 46823e18a3fefbdad2052c0698b13328 568 Pfam PF17287 POTRA domain 151 205 3.8E-16 T 11-10-2018 IPR035251 ShlB, POTRA domain AMD27_13980 70984d697353673224d7483ff0d003dd 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 15 439 28.613 T 11-10-2018 IPR026593 Protein translocase subunit SecY AMD27_13980 70984d697353673224d7483ff0d003dd 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 26 435 2.1E-126 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_13980 70984d697353673224d7483ff0d003dd 450 Pfam PF00344 SecY translocase 81 423 1.9E-112 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_13980 70984d697353673224d7483ff0d003dd 450 ProSitePatterns PS00755 Protein secY signature 1. 81 100 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PIRSF PIRSF004557 10 445 9.7E-123 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_13980 70984d697353673224d7483ff0d003dd 450 SUPERFAMILY SSF103491 9 430 6.8E-128 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 121 144 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 376 394 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 80 100 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 321 343 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 28 46 3.9E-93 T 11-10-2018 AMD27_13980 70984d697353673224d7483ff0d003dd 450 Gene3D G3DSA:1.10.3370.10 12 435 6.9E-159 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_09840 783790598189701e6bef370d1b700eef 263 Pfam PF00899 ThiF family 19 247 1.5E-61 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMD27_09840 783790598189701e6bef370d1b700eef 263 Gene3D G3DSA:3.40.50.720 11 261 2.0E-80 T 11-10-2018 AMD27_09840 783790598189701e6bef370d1b700eef 263 SUPERFAMILY SSF69572 9 256 8.24E-80 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 Gene3D G3DSA:3.40.190.290 95 291 2.4E-24 T 11-10-2018 AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 5.7E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 Pfam PF03466 LysR substrate binding domain 89 291 2.9E-16 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 SUPERFAMILY SSF46785 4 89 1.22E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 SUPERFAMILY SSF53850 90 290 9.77E-20 T 11-10-2018 AMD27_07125 d665f37972eba056b0c1b319bbb493ef 296 Gene3D G3DSA:1.10.10.10 1 86 3.2E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 123 7.7E-37 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 SUPERFAMILY SSF56645 4 247 1.05E-85 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Gene3D G3DSA:1.10.540.10 1 125 3.5E-46 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 PIRSF PIRSF016578 15 390 1.1E-12 T 11-10-2018 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Gene3D G3DSA:2.40.110.10 126 238 9.5E-44 T 11-10-2018 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 1.2E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Gene3D G3DSA:1.20.140.10 239 388 9.6E-42 T 11-10-2018 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 385 1.4E-38 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_07630 c1df35c41a8f833dca63ba28e502ba9d 390 SUPERFAMILY SSF47203 233 388 9.83E-43 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_06400 f52e33a907e3bb92c4d112daedcef5ba 210 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 24 208 30.321 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMD27_06400 f52e33a907e3bb92c4d112daedcef5ba 210 Pfam PF02669 K+-transporting ATPase, c chain 28 207 5.2E-65 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMD27_06400 f52e33a907e3bb92c4d112daedcef5ba 210 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 34 207 1.1E-53 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMD27_06400 f52e33a907e3bb92c4d112daedcef5ba 210 PIRSF PIRSF001296 24 210 1.3E-65 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMD27_15920 d82f9c91a77a039b27fc52637ff43bcd 88 Gene3D G3DSA:2.60.200.60 6 86 5.5E-13 T 11-10-2018 AMD27_15920 d82f9c91a77a039b27fc52637ff43bcd 88 Pfam PF05488 PAAR motif 9 78 4.7E-21 T 11-10-2018 IPR008727 PAAR motif AMD27_02555 e859d7a7668deaab7142b9eb0d9382ce 399 Pfam PF07690 Major Facilitator Superfamily 21 323 2.3E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_02555 e859d7a7668deaab7142b9eb0d9382ce 399 SUPERFAMILY SSF103473 10 388 2.62E-44 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_02555 e859d7a7668deaab7142b9eb0d9382ce 399 Gene3D G3DSA:1.20.1250.20 7 387 8.8E-33 T 11-10-2018 AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 2.5E-190 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Gene3D G3DSA:2.160.10.10 225 453 1.5E-69 T 11-10-2018 AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 1.8E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 297 0.0022 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.9E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 SUPERFAMILY SSF51161 251 437 4.9E-48 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.171 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Pfam PF12804 MobA-like NTP transferase domain 5 132 8.5E-21 T 11-10-2018 IPR025877 MobA-like NTP transferase AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 Gene3D G3DSA:3.90.550.10 1 224 1.3E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_15635 311f37777ee149bce0d9bd3370f7897f 454 SUPERFAMILY SSF53448 1 249 8.34E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 226 400 3.6E-6 T 11-10-2018 AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 423 443 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 344 360 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 370 389 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 244 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 297 308 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 390 407 4.0E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 232 456 2.9E-43 T 11-10-2018 AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 Gene3D G3DSA:3.40.50.720 221 462 2.2E-58 T 11-10-2018 AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 Gene3D G3DSA:3.40.50.720 24 219 1.1E-51 T 11-10-2018 AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 SUPERFAMILY SSF51735 222 457 4.48E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 358 5.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 370 389 5.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 297 308 5.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07145 8f3fa304ef61d057dc553d82d9a463b0 463 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 357 385 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 Pfam PF13847 Methyltransferase domain 107 248 7.6E-17 T 11-10-2018 IPR025714 Methyltransferase domain AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 271 39.409 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 21 267 8.1E-86 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 Gene3D G3DSA:1.10.8.10 4 80 2.9E-16 T 11-10-2018 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 17 271 3.3E-69 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 Gene3D G3DSA:3.40.50.150 81 271 2.8E-55 T 11-10-2018 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_09855 54bcabef3cf786aec33224e9a9f267a0 273 SUPERFAMILY SSF53335 16 269 6.2E-51 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 Pfam PF00281 Ribosomal protein L5 24 80 1.6E-27 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 SUPERFAMILY SSF55282 3 178 2.1E-77 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 Pfam PF00673 ribosomal L5P family C-terminus 84 177 4.7E-43 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 178 42.015 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 Gene3D G3DSA:3.30.1440.10 1 178 1.2E-78 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14020 6f9ab032b6fb8de3e68f87ddc8b2760e 178 PIRSF PIRSF002161 1 178 1.2E-66 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 1.6E-201 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 SMART SM01192 142 427 2.0E-209 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 Gene3D G3DSA:3.20.20.120 128 429 1.3E-130 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMD27_09140 b66896e84b6402275312bc979856b0b6 429 SUPERFAMILY SSF54826 4 137 1.68E-55 T 11-10-2018 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 367 384 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 164 177 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 37 51 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 338 352 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 107 123 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PRINTS PR00148 Enolase signature 315 326 2.7E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 SUPERFAMILY SSF51604 143 416 2.12E-124 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMD27_09140 b66896e84b6402275312bc979856b0b6 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 Gene3D G3DSA:3.30.390.10 1 127 2.6E-55 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMD27_09140 b66896e84b6402275312bc979856b0b6 429 PIRSF PIRSF001400 1 427 4.9E-190 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 Pfam PF03952 Enolase, N-terminal domain 4 134 1.5E-58 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 Hamap MF_00318 Enolase [eno]. 2 415 44.088 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 425 9.9E-132 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_09140 b66896e84b6402275312bc979856b0b6 429 SMART SM01193 4 134 2.0E-91 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 Gene3D G3DSA:3.90.230.10 175 438 1.5E-96 T 11-10-2018 AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 Pfam PF00557 Metallopeptidase family M24 184 415 6.3E-61 T 11-10-2018 IPR000994 Peptidase M24 AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 8 126 1.6E-35 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 SUPERFAMILY SSF53092 4 177 1.99E-44 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 SMART SM01011 3 139 1.5E-54 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 SUPERFAMILY SSF55920 178 436 3.66E-83 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 Gene3D G3DSA:3.40.350.10 3 174 2.0E-51 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMD27_04840 d96237e47b2e1916c11d2ed3b3bd9e32 438 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 350 362 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 Pfam PF00764 Arginosuccinate synthase 19 412 1.9E-59 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 132 143 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 SUPERFAMILY SSF69864 193 444 2.35E-79 T 11-10-2018 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 SUPERFAMILY SSF52402 8 191 2.43E-34 T 11-10-2018 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 Gene3D G3DSA:3.40.50.620 17 194 1.9E-117 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 Gene3D G3DSA:3.90.1260.10 77 370 1.9E-117 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 20 28 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 Gene3D G3DSA:1.10.287.400 380 443 4.4E-31 T 11-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 TIGRFAM TIGR00032 argG: argininosuccinate synthase 16 422 1.3E-162 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMD27_11035 d59d4b1009832c58c7c118624e9b953f 446 Hamap MF_00581 Argininosuccinate synthase [argG]. 4 446 68.198 T 11-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_06205 d18eb83c980ac295fd0f823de5ef7091 214 Gene3D G3DSA:3.40.50.1000 4 200 5.1E-72 T 11-10-2018 IPR023214 HAD superfamily AMD27_06205 d18eb83c980ac295fd0f823de5ef7091 214 Pfam PF08282 haloacid dehalogenase-like hydrolase 61 178 9.3E-5 T 11-10-2018 AMD27_06205 d18eb83c980ac295fd0f823de5ef7091 214 SUPERFAMILY SSF56784 1 188 3.05E-27 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_06205 d18eb83c980ac295fd0f823de5ef7091 214 Gene3D G3DSA:3.90.1470.10 14 133 5.1E-72 T 11-10-2018 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 SUPERFAMILY SSF55021 271 365 4.93E-27 T 11-10-2018 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Gene3D G3DSA:1.20.59.10 16 102 4.3E-30 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Gene3D G3DSA:3.30.70.260 279 368 3.1E-28 T 11-10-2018 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Pfam PF01842 ACT domain 287 351 6.5E-12 T 11-10-2018 IPR002912 ACT domain AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 252 274 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 SUPERFAMILY SSF53850 101 284 4.72E-60 T 11-10-2018 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Pfam PF00800 Prephenate dehydratase 101 278 6.3E-63 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Pfam PF01817 Chorismate mutase type II 18 96 3.9E-22 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 TIGRFAM TIGR01807 CM_P2: chorismate mutase 14 89 1.5E-26 T 11-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Gene3D G3DSA:3.40.190.10 181 265 6.3E-59 T 11-10-2018 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 SMART SM00830 18 99 4.1E-28 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 PIRSF PIRSF001500 7 369 8.6E-135 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 SUPERFAMILY SSF48600 11 97 7.33E-20 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_05275 40fff86a3b31ba6eb4681b554ce90bf3 369 Gene3D G3DSA:3.40.190.10 103 274 6.3E-59 T 11-10-2018 AMD27_06425 061a848bac78b3545cbea74271460649 670 SUPERFAMILY SSF53474 379 645 1.3E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_06425 061a848bac78b3545cbea74271460649 670 Gene3D G3DSA:3.40.50.1820 377 642 1.5E-24 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_06425 061a848bac78b3545cbea74271460649 670 Pfam PF12697 Alpha/beta hydrolase family 452 653 7.3E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 Gene3D G3DSA:1.10.10.10 4 90 4.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 SUPERFAMILY SSF53850 90 292 1.07E-42 T 11-10-2018 AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 6.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 Pfam PF03466 LysR substrate binding domain 90 292 1.9E-43 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 SUPERFAMILY SSF46785 5 86 1.79E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 Gene3D G3DSA:3.40.190.10 92 289 1.5E-65 T 11-10-2018 AMD27_15815 393526071b0254c84f9e7cf9ae76cf26 296 Gene3D G3DSA:3.40.190.10 164 263 1.5E-65 T 11-10-2018 AMD27_15930 dfac8b20d16412453df1b730dc5416cf 320 Gene3D G3DSA:3.40.1730.10 6 179 6.8E-12 T 11-10-2018 IPR038225 T6S-associated protein TagF superfamily AMD27_15930 dfac8b20d16412453df1b730dc5416cf 320 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 10 142 3.0E-26 T 11-10-2018 IPR017748 T6S-associated protein TagF AMD27_15930 dfac8b20d16412453df1b730dc5416cf 320 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 10 102 1.1E-15 T 11-10-2018 IPR017748 T6S-associated protein TagF AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:3.40.50.1380 945 1076 1.5E-38 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:3.40.50.20 554 662 1.0E-48 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF52335 946 1073 4.45E-42 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF56059 128 401 3.01E-109 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:1.10.1030.10 404 553 9.4E-46 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 2.9E-36 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 5.2E-73 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF52440 2 127 4.46E-50 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SMART SM01096 424 547 1.6E-70 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:3.30.470.20 665 935 2.9E-119 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Pfam PF02142 MGS-like domain 962 1047 3.0E-21 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 7.8E-65 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:3.40.50.20 1 116 4.5E-50 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.483 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Gene3D G3DSA:3.30.470.20 119 403 4.5E-130 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.133 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 2.0E-37 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 3 1059 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SMART SM00851 961 1047 6.8E-36 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF52440 557 675 1.22E-49 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF56059 673 933 7.78E-104 T 11-10-2018 AMD27_11610 0f5093b8ce37c7ce8482a4018a29d4f0 1077 SUPERFAMILY SSF48108 397 553 6.28E-52 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PIRSF PIRSF000099 2 429 4.5E-156 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 Pfam PF00815 Histidinol dehydrogenase 25 427 2.8E-166 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 Gene3D G3DSA:3.40.50.1980 31 232 4.5E-123 T 11-10-2018 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 427 3.2E-159 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 SUPERFAMILY SSF53720 28 428 1.28E-86 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 428 40.526 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 Gene3D G3DSA:3.40.50.1980 234 350 4.5E-123 T 11-10-2018 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 1.4E-78 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_03340 8ef66de69aafa4ecb5500a74d9fd53fc 429 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AMD27_16685 5412a72b27c48689d7e49db0f5de1b8e 136 Pfam PF11672 zinc-finger-containing domain 9 125 3.6E-36 T 11-10-2018 IPR021686 Protein of unkown function DUF3268 AMD27_00720 89483429fe6f43697b596da6657b40bb 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 161 1.2E-56 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 Pfam PF01327 Polypeptide deformylase 5 153 1.6E-51 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 PIRSF PIRSF004749 1 175 3.9E-56 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.452 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 SUPERFAMILY SSF56420 2 165 1.57E-61 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMD27_00720 89483429fe6f43697b596da6657b40bb 176 Gene3D G3DSA:3.90.45.10 1 168 5.1E-65 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMD27_00720 89483429fe6f43697b596da6657b40bb 176 PRINTS PR01576 Peptide deformylase signature 102 120 6.1E-37 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 PRINTS PR01576 Peptide deformylase signature 33 62 6.1E-37 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 PRINTS PR01576 Peptide deformylase signature 121 150 6.1E-37 T 11-10-2018 IPR023635 Peptide deformylase AMD27_00720 89483429fe6f43697b596da6657b40bb 176 PRINTS PR01576 Peptide deformylase signature 90 101 6.1E-37 T 11-10-2018 IPR023635 Peptide deformylase AMD27_01915 e4639d6583cd7196109609d101cb761f 311 Pfam PF01479 S4 domain 22 68 1.2E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 306 1.7E-78 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 SUPERFAMILY SSF55174 21 72 3.66E-10 T 11-10-2018 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 SMART SM00363 22 82 3.7E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 Gene3D G3DSA:3.30.2350.10 95 310 3.1E-66 T 11-10-2018 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 SUPERFAMILY SSF55120 95 308 2.72E-56 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 Pfam PF00849 RNA pseudouridylate synthase 104 248 1.2E-29 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01915 e4639d6583cd7196109609d101cb761f 311 Gene3D G3DSA:3.10.290.10 11 74 9.4E-18 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_01570 e1543b73bf4d4d9712bd209d67009ea8 127 Gene3D G3DSA:3.30.1330.40 3 126 3.1E-50 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_01570 e1543b73bf4d4d9712bd209d67009ea8 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 4.6E-37 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_01570 e1543b73bf4d4d9712bd209d67009ea8 127 SUPERFAMILY SSF55298 1 125 3.3E-44 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_01570 e1543b73bf4d4d9712bd209d67009ea8 127 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 AMD27_01570 e1543b73bf4d4d9712bd209d67009ea8 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 6.3E-48 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 19 372 3.7E-139 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 PIRSF PIRSF000443 2 381 2.3E-130 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 Gene3D G3DSA:3.40.50.1820 24 359 1.9E-137 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 SUPERFAMILY SSF53474 11 373 5.46E-97 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 Pfam PF00561 alpha/beta hydrolase fold 49 357 1.0E-32 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 7 373 28.733 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMD27_02335 da6dc03eb3f53ceb9193e248c6edd7d1 386 Gene3D G3DSA:1.10.1740.110 186 291 1.9E-137 T 11-10-2018 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 860 921 5.4E-7 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 424 582 2.6E-28 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF55326 215 422 1.19E-59 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:3.40.50.880 964 1276 4.3E-131 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:1.10.8.750 147 207 2.1E-26 T 11-10-2018 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:3.30.1330.10 208 414 1.4E-40 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF52317 1018 1274 4.79E-93 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF56042 423 608 5.68E-50 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SMART SM01211 1021 1275 2.7E-148 T 11-10-2018 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:3.30.1330.10 610 797 2.1E-26 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:3.90.650.10 415 599 5.0E-58 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Gene3D G3DSA:3.90.650.10 798 963 4.6E-20 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF109736 149 214 3.79E-21 T 11-10-2018 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF56042 810 1014 2.99E-42 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 5 1274 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF55326 611 809 1.44E-65 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 SUPERFAMILY SSF82697 1 145 1.2E-30 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1276 20.124 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_05725 2e2652dd9d17f17de6e80c421ba5e268 1276 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1021 1274 6.2E-104 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 29 835 2.7E-232 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Pfam PF07244 Surface antigen variable number repeat 96 176 2.4E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Pfam PF07244 Surface antigen variable number repeat 180 267 2.4E-13 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Pfam PF07244 Surface antigen variable number repeat 351 425 3.4E-14 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Pfam PF07244 Surface antigen variable number repeat 271 348 4.5E-11 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Pfam PF01103 Surface antigen 452 835 2.4E-74 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:3.10.20.310 348 425 1.0E-23 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 PIRSF PIRSF006076 1 835 2.6E-237 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 3 835 23.238 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:3.10.20.310 96 176 3.5E-15 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:3.10.20.310 22 95 3.3E-13 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:3.10.20.310 179 270 2.3E-20 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:2.40.160.50 431 835 5.2E-107 T 11-10-2018 AMD27_08875 1f1b22322f1aa10f3d8b713a77ec74ef 835 Gene3D G3DSA:3.10.20.310 271 347 6.1E-15 T 11-10-2018 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 SMART SM00418 5 83 8.5E-25 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 SUPERFAMILY SSF46785 4 82 1.18E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 Gene3D G3DSA:1.10.10.10 1 91 1.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 Pfam PF01022 Bacterial regulatory protein, arsR family 12 54 6.8E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 6.5E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 6.5E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 6.5E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_07960 0d4fdcaf8a9ca5309b45a33dda80d3e1 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 6.5E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMD27_01315 eae22ed8e2982c95ec71e92fa72a7c67 443 SUPERFAMILY SSF55073 290 441 1.57E-35 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_01315 eae22ed8e2982c95ec71e92fa72a7c67 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 282 441 3.7E-35 T 11-10-2018 IPR000160 GGDEF domain AMD27_01315 eae22ed8e2982c95ec71e92fa72a7c67 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 287 438 2.4E-34 T 11-10-2018 IPR000160 GGDEF domain AMD27_01315 eae22ed8e2982c95ec71e92fa72a7c67 443 Gene3D G3DSA:3.30.70.270 273 442 4.1E-42 T 11-10-2018 AMD27_01315 eae22ed8e2982c95ec71e92fa72a7c67 443 SMART SM00267 274 442 2.2E-38 T 11-10-2018 IPR000160 GGDEF domain AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 Gene3D G3DSA:1.10.230.10 224 322 3.8E-123 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 Gene3D G3DSA:1.10.580.10 32 355 3.8E-123 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 SUPERFAMILY SSF48256 6 375 2.36E-126 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 1.8E-116 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PIRSF PIRSF001369 3 376 3.6E-120 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 2.2E-159 T 11-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 251 271 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 308 324 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 126 139 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 176 191 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 198 226 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_08930 d9a8ef8a7d72ff9dd3118ea3fe4a9b60 378 PRINTS PR00143 Citrate synthase signature 328 342 2.6E-37 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 Pfam PF00120 Glutamine synthetase, catalytic domain 102 466 1.2E-130 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 Gene3D G3DSA:3.30.590.10 104 457 6.3E-137 T 11-10-2018 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 SUPERFAMILY SSF54368 2 99 2.49E-34 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 SMART SM01230 101 379 4.4E-129 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 3.9E-194 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 SUPERFAMILY SSF55931 101 468 1.67E-128 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 Gene3D G3DSA:3.10.20.70 1 103 2.2E-37 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMD27_11255 b4b65e5d3a2678e96f8b659dce660bcd 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 94 4.4E-30 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Gene3D G3DSA:3.40.50.300 130 417 7.5E-128 T 11-10-2018 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SMART SM00382 170 355 3.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.1E-31 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SMART SM00959 5 47 8.6E-17 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SUPERFAMILY SSF50249 48 125 2.06E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.0E-210 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.9E-22 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SUPERFAMILY SSF52540 90 370 7.84E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-15 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 241.456 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Gene3D G3DSA:1.10.720.10 1 46 4.1E-20 T 11-10-2018 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SMART SM00357 52 118 1.5E-18 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 Gene3D G3DSA:2.40.50.140 47 123 9.8E-34 T 11-10-2018 AMD27_02795 9d672e2db8c0b13328931db02ef112d9 422 SUPERFAMILY SSF68912 1 46 2.2E-11 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 15 455 2.5E-244 T 11-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 Pfam PF00202 Aminotransferase class-III 34 447 1.2E-91 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 Gene3D G3DSA:3.40.640.10 71 338 4.0E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 SUPERFAMILY SSF53383 24 449 2.95E-118 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_05565 a29fd2d23fb772fc27020ec92ecf112f 457 Gene3D G3DSA:3.90.1150.10 23 441 4.0E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_09510 b11a188aea50247d95e0d2affd74a256 284 Pfam PF03180 NLPA lipoprotein 41 275 5.1E-68 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMD27_09510 b11a188aea50247d95e0d2affd74a256 284 SUPERFAMILY SSF53850 40 275 8.93E-60 T 11-10-2018 AMD27_09510 b11a188aea50247d95e0d2affd74a256 284 Gene3D G3DSA:3.40.190.10 43 264 4.4E-65 T 11-10-2018 AMD27_09510 b11a188aea50247d95e0d2affd74a256 284 Gene3D G3DSA:3.40.190.10 120 225 4.4E-65 T 11-10-2018 AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 Gene3D G3DSA:3.30.830.10 288 489 8.8E-44 T 11-10-2018 AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 Gene3D G3DSA:3.30.830.10 67 281 2.4E-37 T 11-10-2018 AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 SUPERFAMILY SSF63411 67 270 5.94E-33 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 Pfam PF05193 Peptidase M16 inactive domain 234 408 1.7E-20 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 Pfam PF00675 Insulinase (Peptidase family M16) 85 226 2.8E-9 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMD27_07490 8ffbbc8f7ce18e5c06d908edb8de7f3f 502 SUPERFAMILY SSF63411 298 476 1.2E-34 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 40 58 2.4E-5 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 123 141 2.4E-5 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 Gene3D G3DSA:1.20.272.10 241 361 6.4E-31 T 11-10-2018 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 370 4.3E-26 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 Gene3D G3DSA:1.10.8.60 7 239 8.2E-103 T 11-10-2018 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 SUPERFAMILY SSF52540 32 222 4.67E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 Gene3D G3DSA:3.40.50.300 12 176 8.2E-103 T 11-10-2018 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 SUPERFAMILY SSF48019 242 363 4.0E-26 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 SMART SM00382 36 177 3.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 Pfam PF13177 DNA polymerase III, delta subunit 19 177 1.5E-39 T 11-10-2018 AMD27_07175 fb571085b0fc0e86b96e1b4f5cd79e99 761 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 355 1.2E-133 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMD27_03685 4eb3fa5fc16999df4eb27d98fec71b39 416 Gene3D G3DSA:3.60.21.10 1 283 8.2E-76 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_03685 4eb3fa5fc16999df4eb27d98fec71b39 416 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 290 387 1.0E-9 T 11-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AMD27_03685 4eb3fa5fc16999df4eb27d98fec71b39 416 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 4 260 2.4E-53 T 11-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AMD27_03685 4eb3fa5fc16999df4eb27d98fec71b39 416 Pfam PF00149 Calcineurin-like phosphoesterase 4 234 2.2E-16 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_03685 4eb3fa5fc16999df4eb27d98fec71b39 416 SUPERFAMILY SSF56300 4 341 2.37E-53 T 11-10-2018 AMD27_01870 cd2a93290f5075acdafe3810475b49b5 536 SUPERFAMILY SSF52467 12 279 6.07E-15 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_01870 cd2a93290f5075acdafe3810475b49b5 536 Gene3D G3DSA:3.30.1600.10 39 106 1.0E-7 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily AMD27_01870 cd2a93290f5075acdafe3810475b49b5 536 Gene3D G3DSA:3.40.50.1220 25 135 1.0E-7 T 11-10-2018 AMD27_13815 ef38f54fa2aeaf4fe6ff1d7483c2a528 293 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 208 264 9.1E-12 T 11-10-2018 IPR006260 TonB/TolA, C-terminal AMD27_13815 ef38f54fa2aeaf4fe6ff1d7483c2a528 293 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 206 268 9.0E-13 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 AMD27_13815 ef38f54fa2aeaf4fe6ff1d7483c2a528 293 SUPERFAMILY SSF74653 187 286 4.71E-16 T 11-10-2018 AMD27_13815 ef38f54fa2aeaf4fe6ff1d7483c2a528 293 Gene3D G3DSA:3.30.1150.10 131 286 1.5E-17 T 11-10-2018 AMD27_12695 8af1e862be35d494a13e171ae7b1d5a3 132 SUPERFAMILY SSF89946 8 120 1.19E-28 T 11-10-2018 IPR036701 RraB-like superfamily AMD27_12695 8af1e862be35d494a13e171ae7b1d5a3 132 Gene3D G3DSA:3.30.70.970 6 124 1.5E-8 T 11-10-2018 IPR036701 RraB-like superfamily AMD27_12695 8af1e862be35d494a13e171ae7b1d5a3 132 Pfam PF06877 Regulator of ribonuclease activity B 11 110 3.0E-25 T 11-10-2018 IPR009671 Regulator of ribonuclease activity B domain AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 599 9.4E-52 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 705 853 3.8E-43 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Gene3D G3DSA:3.55.50.10 112 222 1.0E-46 T 11-10-2018 AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 SUPERFAMILY SSF69279 25 198 7.94E-40 T 11-10-2018 AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Gene3D G3DSA:2.40.50.230 441 549 1.1E-30 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Gene3D G3DSA:3.30.1920.30 255 337 1.0E-46 T 11-10-2018 AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 SUPERFAMILY SSF69255 450 543 1.78E-23 T 11-10-2018 AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 572 679 1.2E-35 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Pfam PF05954 Phage late control gene D protein (GPD) 44 386 3.0E-63 T 11-10-2018 AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 26 597 1.2E-66 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_12660 52642c9b16818274223e75e05a43e3ad 954 Gene3D G3DSA:2.30.110.50 32 383 1.0E-46 T 11-10-2018 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 ProSitePatterns PS00091 Thymidylate synthase active site. 142 170 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 280 3.6E-138 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 SUPERFAMILY SSF55831 1 280 2.75E-128 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 Hamap MF_00008 Thymidylate synthase [thyA]. 1 280 39.561 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 PRINTS PR00108 Thymidylate synthase family signature 157 172 3.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 PRINTS PR00108 Thymidylate synthase family signature 131 150 3.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 PRINTS PR00108 Thymidylate synthase family signature 175 201 3.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 PRINTS PR00108 Thymidylate synthase family signature 213 230 3.6E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 Pfam PF00303 Thymidylate synthase 2 280 2.0E-117 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_02265 a8419df2c1a4cc0df53ce57049a541e6 280 Gene3D G3DSA:3.30.572.10 1 280 1.1E-130 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 SUPERFAMILY SSF51395 1 332 1.83E-99 T 11-10-2018 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 332 3.8E-126 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 77 96 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 Pfam PF01180 Dihydroorotate dehydrogenase 44 330 9.6E-84 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 PIRSF PIRSF000164 17 334 4.3E-92 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 Gene3D G3DSA:3.20.20.70 2 332 6.6E-127 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_10070 69538441f115a3dc413473f5902dd58b 334 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 333 48.821 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 PIRSF PIRSF005963 2 334 4.1E-125 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 Pfam PF04055 Radical SAM superfamily 88 249 3.7E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 33 70 6.8E-7 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 Hamap MF_00206 Lipoyl synthase [lipA]. 1 322 147.205 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 SUPERFAMILY SSF102114 50 313 2.49E-63 T 11-10-2018 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 Gene3D G3DSA:3.20.20.70 81 295 9.6E-21 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 SMART SM00729 81 287 1.3E-19 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_10800 c760d01547777f2cdc81664ab57982fc 337 TIGRFAM TIGR00510 lipA: lipoyl synthase 31 310 1.1E-120 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 Gene3D G3DSA:2.40.110.10 139 238 3.9E-28 T 11-10-2018 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 PIRSF PIRSF016578 15 403 2.5E-32 T 11-10-2018 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 136 2.0E-10 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 SUPERFAMILY SSF47203 252 408 1.05E-20 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 SUPERFAMILY SSF56645 35 238 8.77E-40 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 Gene3D G3DSA:1.10.540.10 31 138 4.3E-22 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 Gene3D G3DSA:1.20.140.10 239 410 1.5E-45 T 11-10-2018 AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 24 412 3.4E-174 T 11-10-2018 IPR023922 Sulphate-starvation-induced SfnB AMD27_09500 cb495650e8d2433f5352c093d84d2ed2 413 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 256 389 1.3E-16 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 169 194 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 SUPERFAMILY SSF51735 136 321 2.89E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 SMART SM01003 4 136 8.6E-54 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 Gene3D G3DSA:3.40.50.720 3 369 7.2E-130 T 11-10-2018 AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 1.2E-37 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 SMART SM01002 145 316 4.4E-73 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 Gene3D G3DSA:3.40.50.720 136 323 7.2E-130 T 11-10-2018 AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 SUPERFAMILY SSF52283 1 167 2.13E-47 T 11-10-2018 AMD27_02575 280b46ff955c54d23673e14a8aac17b5 375 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 371 3.4E-72 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 SUPERFAMILY SSF82861 25 108 9.68E-9 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 SUPERFAMILY SSF82689 182 274 3.01E-19 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 Gene3D G3DSA:2.30.30.60 126 179 5.2E-8 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 SUPERFAMILY SSF50182 111 180 3.04E-11 T 11-10-2018 IPR010920 LSM domain superfamily AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 Gene3D G3DSA:3.30.70.100 181 274 1.6E-18 T 11-10-2018 AMD27_02840 9bd3a1cbf88fe0cf9a491c04ba0e3498 305 Pfam PF00924 Mechanosensitive ion channel 69 269 8.2E-40 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 Gene3D G3DSA:2.120.10.30 2 302 1.8E-52 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 SUPERFAMILY SSF63829 4 298 3.17E-50 T 11-10-2018 AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 12 281 1.5E-44 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 154 176 3.2E-9 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 263 281 3.2E-9 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMD27_07920 dd67fd7aef16ce939bab0edb15939c65 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 219 236 3.2E-9 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Gene3D G3DSA:3.40.350.10 151 300 8.8E-35 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Pfam PF16188 C-terminal region of peptidase_M24 540 600 2.0E-23 T 11-10-2018 IPR032416 Peptidase M24, C-terminal domain AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Pfam PF01321 Creatinase/Prolidase N-terminal domain 13 132 1.1E-12 T 11-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 SUPERFAMILY SSF55920 307 566 6.15E-52 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Pfam PF00557 Metallopeptidase family M24 312 527 8.7E-44 T 11-10-2018 IPR000994 Peptidase M24 AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Gene3D G3DSA:3.40.350.10 2 150 8.7E-36 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 SUPERFAMILY SSF53092 13 89 1.6E-8 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Gene3D G3DSA:3.90.230.10 304 600 3.5E-93 T 11-10-2018 AMD27_04625 43d9e8d905f3494601259913e2b5ebdb 600 Pfam PF16189 Creatinase/Prolidase N-terminal domain 152 309 7.8E-39 T 11-10-2018 AMD27_11850 4821af9ab5aee8f80653341b05bfc54f 243 Gene3D G3DSA:3.40.50.620 5 242 2.2E-64 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11850 4821af9ab5aee8f80653341b05bfc54f 243 PIRSF PIRSF000857 6 243 1.1E-76 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AMD27_11850 4821af9ab5aee8f80653341b05bfc54f 243 SUPERFAMILY SSF52402 15 201 6.85E-44 T 11-10-2018 AMD27_11850 4821af9ab5aee8f80653341b05bfc54f 243 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 213 1.9E-46 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMD27_11850 4821af9ab5aee8f80653341b05bfc54f 243 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 237 2.5E-77 T 11-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 SUPERFAMILY SSF101967 1441 1491 3.27E-10 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 SUPERFAMILY SSF101967 510 645 1.02E-22 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 750 791 1.3E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 620 654 7.0E-10 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1241 1282 1.7E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1522 1553 1.2E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 680 720 6.0E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 978 1019 1.8E-10 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1469 1508 6.9E-9 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1188 1226 3.7E-9 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05658 Head domain of trimeric autotransporter adhesin 511 537 1.9E-5 T 11-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Pfam PF05658 Head domain of trimeric autotransporter adhesin 539 565 5.5E-5 T 11-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:2.150.10.10 492 623 6.3E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 SUPERFAMILY SSF101967 950 1001 5.1E-11 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 SUPERFAMILY SSF101967 1160 1211 8.63E-11 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:3.30.390.90 1436 1474 4.4E-13 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:3.30.390.90 945 983 4.4E-13 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:3.30.390.90 1155 1193 6.1E-14 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:1.20.5.170 680 728 1.1E-7 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:1.20.5.170 625 671 6.5E-7 T 11-10-2018 AMD27_16180 bdbd22fe61099c91472076b96d08ab9e 1558 Gene3D G3DSA:2.150.10.10 729 809 1.5E-5 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_14475 64fe0f5196a7d3483aaafc12cc1f7893 411 Pfam PF01544 CorA-like Mg2+ transporter protein 28 358 1.7E-41 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMD27_14475 64fe0f5196a7d3483aaafc12cc1f7893 411 SUPERFAMILY SSF143865 23 295 5.36E-17 T 11-10-2018 AMD27_14475 64fe0f5196a7d3483aaafc12cc1f7893 411 SUPERFAMILY SSF144083 297 359 1.44E-19 T 11-10-2018 AMD27_14475 64fe0f5196a7d3483aaafc12cc1f7893 411 Gene3D G3DSA:1.20.58.340 305 361 1.7E-19 T 11-10-2018 AMD27_14475 64fe0f5196a7d3483aaafc12cc1f7893 411 Gene3D G3DSA:1.20.58.340 167 303 3.1E-5 T 11-10-2018 AMD27_11990 ce7edeee94ea4332dea61bbe4d4d3fe0 409 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 408 24.063 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_11990 ce7edeee94ea4332dea61bbe4d4d3fe0 409 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 5 407 1.4E-142 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_11990 ce7edeee94ea4332dea61bbe4d4d3fe0 409 Pfam PF03616 Sodium/glutamate symporter 5 377 3.5E-131 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_03805 6a99599d6db806129d0c8ddd78b10edd 93 SUPERFAMILY SSF46689 45 90 3.23E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03805 6a99599d6db806129d0c8ddd78b10edd 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_11300 6a99599d6db806129d0c8ddd78b10edd 93 SUPERFAMILY SSF46689 45 90 3.23E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_11300 6a99599d6db806129d0c8ddd78b10edd 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_07380 6a99599d6db806129d0c8ddd78b10edd 93 SUPERFAMILY SSF46689 45 90 3.23E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_07380 6a99599d6db806129d0c8ddd78b10edd 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 PIRSF PIRSF006078 3 378 3.0E-131 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 SUPERFAMILY SSF110738 4 372 1.44E-128 T 11-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 Pfam PF02595 Glycerate kinase family 5 373 2.4E-139 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 4 372 5.5E-147 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 Gene3D G3DSA:3.90.1510.10 44 279 2.3E-135 T 11-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 AMD27_02170 d68ab4a8f179400052a71379887a36b0 381 Gene3D G3DSA:3.40.50.10350 4 365 2.3E-135 T 11-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 SUPERFAMILY SSF89000 388 438 3.14E-14 T 11-10-2018 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 Gene3D G3DSA:3.20.20.70 10 376 2.3E-151 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 550 4.2E-225 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 SUPERFAMILY SSF51569 22 330 3.11E-97 T 11-10-2018 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 SUPERFAMILY SSF110921 442 549 1.57E-29 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 549 6.5E-27 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 SMART SM00917 422 550 4.5E-30 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 7 551 52.085 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 Pfam PF00682 HMGL-like 33 312 6.3E-77 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMD27_02340 c76719cdc73be9b73bbe33fdb3d6d208 565 Gene3D G3DSA:3.30.160.270 377 549 3.5E-52 T 11-10-2018 AMD27_13455 013f1531eaab6636cc94797338749a19 373 Pfam PF04551 GcpE protein 11 352 1.3E-132 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMD27_13455 013f1531eaab6636cc94797338749a19 373 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 362 34.412 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMD27_13455 013f1531eaab6636cc94797338749a19 373 SUPERFAMILY SSF51717 15 207 2.82E-8 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_13455 013f1531eaab6636cc94797338749a19 373 SUPERFAMILY SSF56014 264 352 4.67E-14 T 11-10-2018 AMD27_13455 013f1531eaab6636cc94797338749a19 373 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 351 8.3E-128 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMD27_13455 013f1531eaab6636cc94797338749a19 373 Gene3D G3DSA:3.20.20.20 1 260 1.7E-102 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_13455 013f1531eaab6636cc94797338749a19 373 PIRSF PIRSF004640 1 363 1.9E-145 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMD27_13455 013f1531eaab6636cc94797338749a19 373 Gene3D G3DSA:3.30.413.10 261 360 4.1E-28 T 11-10-2018 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 SUPERFAMILY SSF69593 265 499 2.09E-24 T 11-10-2018 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 23 832 23.744 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 PIRSF PIRSF500064 11 839 2.1E-232 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 Pfam PF01553 Acyltransferase 300 439 1.7E-20 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 PIRSF PIRSF000437 31 841 2.9E-226 T 11-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 35 823 2.1E-299 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMD27_14140 ae091a7a12514a8ea5233597abaa2ff5 857 SMART SM00563 317 444 2.3E-23 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_15315 e46efb2d4441ee3c4cd82efdbdbe105d 284 Pfam PF08478 POTRA domain, FtsQ-type 60 125 1.0E-11 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type AMD27_15315 e46efb2d4441ee3c4cd82efdbdbe105d 284 Pfam PF03799 Cell division protein FtsQ 132 245 3.2E-17 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB AMD27_15315 e46efb2d4441ee3c4cd82efdbdbe105d 284 Gene3D G3DSA:3.40.50.11690 130 258 3.1E-31 T 11-10-2018 AMD27_15315 e46efb2d4441ee3c4cd82efdbdbe105d 284 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 32 253 21.22 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 AMD27_15315 e46efb2d4441ee3c4cd82efdbdbe105d 284 Gene3D G3DSA:3.10.20.310 59 127 3.0E-12 T 11-10-2018 AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 SUPERFAMILY SSF54631 201 336 6.96E-23 T 11-10-2018 AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 SMART SM01091 349 429 9.3E-27 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 SUPERFAMILY SSF56176 348 434 1.25E-21 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 Pfam PF00571 CBS domain 286 331 7.5E-6 T 11-10-2018 IPR000644 CBS domain AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 Gene3D G3DSA:3.10.580.10 195 349 1.5E-34 T 11-10-2018 AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 Pfam PF01595 Domain of unknown function DUF21 9 199 2.9E-37 T 11-10-2018 IPR002550 CNNM, transmembrane domain AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 Pfam PF03471 Transporter associated domain 350 427 3.9E-20 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_11720 5d2ee7d4b4bc0ac04e312f97a76153df 440 Gene3D G3DSA:3.30.465.10 350 429 3.9E-29 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 Gene3D G3DSA:3.30.420.10 2 158 1.4E-48 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 2.2E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 2.2E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 2.2E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 2.2E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 2.2E-34 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 45.359 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 2.9E-56 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 SUPERFAMILY SSF53098 3 155 1.37E-51 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AMD27_09385 1adda00591ffe100bda70171dc30c0c9 181 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 2.4E-60 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMD27_09115 e623564c001357d3460cad890e3208e1 420 Gene3D G3DSA:3.50.50.60 1 74 3.1E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09115 e623564c001357d3460cad890e3208e1 420 Pfam PF01266 FAD dependent oxidoreductase 2 399 8.9E-71 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMD27_09115 e623564c001357d3460cad890e3208e1 420 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 412 46.826 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AMD27_09115 e623564c001357d3460cad890e3208e1 420 Gene3D G3DSA:3.30.9.10 134 360 1.7E-46 T 11-10-2018 AMD27_09115 e623564c001357d3460cad890e3208e1 420 SUPERFAMILY SSF51905 1 418 6.99E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09115 e623564c001357d3460cad890e3208e1 420 Gene3D G3DSA:3.50.50.60 105 400 1.7E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09115 e623564c001357d3460cad890e3208e1 420 SUPERFAMILY SSF54373 271 361 5.23E-17 T 11-10-2018 AMD27_03600 4481023420270f4e2974868b6dc0159d 307 SMART SM00563 92 234 1.4E-7 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_03600 4481023420270f4e2974868b6dc0159d 307 Pfam PF01553 Acyltransferase 85 232 4.0E-10 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_03600 4481023420270f4e2974868b6dc0159d 307 SUPERFAMILY SSF69593 58 302 2.35E-26 T 11-10-2018 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Gene3D G3DSA:1.20.140.10 288 457 1.0E-42 T 11-10-2018 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Gene3D G3DSA:2.40.110.10 162 287 4.0E-28 T 11-10-2018 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 SUPERFAMILY SSF56645 41 280 2.09E-60 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 SUPERFAMILY SSF47203 288 475 1.08E-46 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 1.8E-21 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 159 8.5E-18 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Gene3D G3DSA:1.10.540.10 16 161 2.2E-21 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 2.8E-17 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 33 7.9E-15 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMD27_12915 a220f8719ea06ee7b5af1f8b03179296 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 470 594 1.8E-35 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Hamap MF_01973 Lon protease [lon]. 19 785 66.183 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Gene3D G3DSA:2.30.130.40 12 126 1.5E-27 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 583 785 9.1E-86 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Gene3D G3DSA:1.10.8.60 503 597 3.7E-31 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 364 500 6.0E-20 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Gene3D G3DSA:3.40.50.300 325 502 8.4E-63 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Gene3D G3DSA:1.20.58.1480 131 255 5.4E-23 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 SMART SM00382 360 504 2.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Gene3D G3DSA:3.30.230.10 598 785 2.4E-74 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 SMART SM00464 18 213 6.4E-58 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 SUPERFAMILY SSF88697 18 211 4.97E-28 T 11-10-2018 IPR015947 PUA-like superfamily AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 211 2.9E-26 T 11-10-2018 IPR003111 Lon, substrate-binding domain AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 SUPERFAMILY SSF54211 608 783 1.56E-54 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 SUPERFAMILY SSF52540 326 596 6.95E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PIRSF PIRSF001174 6 788 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 TIGRFAM TIGR00763 lon: endopeptidase La 20 783 4.9E-279 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 689 697 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 739 757 7.9E-50 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 368 387 7.9E-50 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 686 705 7.9E-50 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 608 624 7.9E-50 T 11-10-2018 AMD27_04765 e70360f58af415b61ab9f324786ce37a 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 716 735 7.9E-50 T 11-10-2018 AMD27_14490 527ab348d43c9e4305da49e1c3f71838 437 Pfam PF00144 Beta-lactamase 50 394 1.2E-50 T 11-10-2018 IPR001466 Beta-lactamase-related AMD27_14490 527ab348d43c9e4305da49e1c3f71838 437 Gene3D G3DSA:3.40.710.30 35 413 3.6E-76 T 11-10-2018 AMD27_14490 527ab348d43c9e4305da49e1c3f71838 437 SUPERFAMILY SSF56601 37 391 6.53E-69 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 196 334 3.3E-48 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 204 225 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 23 173 7.3E-48 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 21 338 33.419 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 149 169 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 254 271 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 25 42 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 214 238 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 75 102 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 189 213 1.1E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 Gene3D G3DSA:1.10.1040.10 205 351 7.5E-48 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 PIRSF PIRSF000114 16 348 8.1E-104 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 SUPERFAMILY SSF51735 22 192 1.06E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 SUPERFAMILY SSF48179 195 347 2.65E-51 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_10090 18f55030a38cd76b41ddeb5582981e19 357 Gene3D G3DSA:3.40.50.720 11 203 1.5E-59 T 11-10-2018 AMD27_16340 36dacff757a4537f1fce23ad67213cde 324 Pfam PF01343 Peptidase family S49 136 281 2.5E-32 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMD27_16340 36dacff757a4537f1fce23ad67213cde 324 Gene3D G3DSA:3.40.1750.20 173 239 1.1E-59 T 11-10-2018 AMD27_16340 36dacff757a4537f1fce23ad67213cde 324 SUPERFAMILY SSF52096 49 269 1.64E-37 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_16340 36dacff757a4537f1fce23ad67213cde 324 Gene3D G3DSA:3.90.226.10 73 272 1.1E-59 T 11-10-2018 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 119 132 - T 11-10-2018 IPR033135 ClpP, histidine active site AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 1.3E-106 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 6.8E-52 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 6.8E-52 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 6.8E-52 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 6.8E-52 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 6.8E-52 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 44.102 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 97 108 - T 11-10-2018 IPR018215 ClpP, Ser active site AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 Gene3D G3DSA:3.90.226.10 3 202 1.7E-83 T 11-10-2018 AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 SUPERFAMILY SSF52096 18 200 9.12E-76 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02370 2233ac526d8f1b861edca96b6eaeaf91 203 Pfam PF00574 Clp protease 20 199 2.0E-88 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMD27_00795 eabe615acbc61a6d25707c3c4f16ce53 109 SUPERFAMILY SSF103473 3 102 4.05E-10 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1358 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:2.40.270.10 800 841 5.3E-6 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF04560 RNA polymerase Rpb2, domain 7 1285 1359 4.8E-26 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF10385 RNA polymerase beta subunit external 1 domain 600 665 9.8E-21 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF04565 RNA polymerase Rpb2, domain 3 522 589 3.7E-30 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1361 12.231 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1110.10 160 260 6.4E-28 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 358 463 8.5E-14 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 153 224 1.5E-6 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1100.10 655 722 2.3E-20 T 11-10-2018 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF04563 RNA polymerase beta subunit 26 508 1.4E-40 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:2.40.270.10 1042 1261 1.9E-87 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1110.10 320 450 4.7E-32 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1084 1096 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1100.10 451 630 8.7E-69 T 11-10-2018 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1100.10 18 159 1.3E-51 T 11-10-2018 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Pfam PF00562 RNA polymerase Rpb2, domain 6 727 1283 9.7E-158 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:2.40.50.100 723 797 6.8E-30 T 11-10-2018 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:2.40.50.150 842 964 2.6E-44 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 Gene3D G3DSA:3.90.1800.10 1271 1324 7.8E-11 T 11-10-2018 AMD27_01240 1b3289d4e632060912a87c548552ff11 1362 SUPERFAMILY SSF64484 12 1360 0.0 T 11-10-2018 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 SUPERFAMILY SSF47384 212 290 9.02E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Gene3D G3DSA:1.10.287.130 221 291 1.5E-23 T 11-10-2018 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 SMART SM00388 224 290 5.3E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 116 443 1.1E-123 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 446 6.3E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 SUPERFAMILY SSF55874 279 445 7.73E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 SUPERFAMILY SSF55785 128 223 7.33E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Gene3D G3DSA:3.30.450.20 114 220 1.3E-7 T 11-10-2018 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Pfam PF13188 PAS domain 123 162 1.2E-4 T 11-10-2018 IPR000014 PAS domain AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 289 1.1E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 SMART SM00387 335 447 2.7E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 4.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 400 4.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 4.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 4.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Gene3D G3DSA:3.30.565.10 292 449 8.4E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15550 1bd31540e153ef9298b5442c15e9e57b 452 Pfam PF11808 Domain of unknown function (DUF3329) 27 106 1.9E-14 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 PIRSF PIRSF006092 1 30 230.0 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 PIRSF PIRSF006092 20 127 8.9E-22 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 SUPERFAMILY SSF54534 48 126 1.28E-15 T 11-10-2018 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 Gene3D G3DSA:1.10.286.20 1 43 2.7E-9 T 11-10-2018 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 Pfam PF14760 Rnk N-terminus 4 43 1.1E-12 T 11-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 49 125 1.6E-16 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMD27_10660 17b9328e6da80a198c02ec5237a32f7c 134 Gene3D G3DSA:3.10.50.30 45 134 1.4E-25 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Gene3D G3DSA:2.30.110.50 30 379 2.8E-42 T 11-10-2018 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 848 995 5.8E-45 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 559 665 4.1E-35 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 SUPERFAMILY SSF69255 436 530 1.6E-22 T 11-10-2018 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 34 585 2.7E-53 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Gene3D G3DSA:2.40.50.230 427 535 1.9E-29 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Pfam PF05954 Phage late control gene D protein (GPD) 43 384 6.2E-57 T 11-10-2018 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Gene3D G3DSA:3.55.50.10 111 221 2.8E-42 T 11-10-2018 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 SUPERFAMILY SSF69279 24 195 3.63E-39 T 11-10-2018 AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 24 583 1.8E-66 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_00565 12a92562f6ebb5357e41e5e959592efe 1109 Gene3D G3DSA:3.30.1920.30 254 335 2.8E-42 T 11-10-2018 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SMART SM00387 241 364 5.3E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Gene3D G3DSA:1.10.287.130 140 197 1.4E-13 T 11-10-2018 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SUPERFAMILY SSF47384 129 195 1.53E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SMART SM00091 7 74 1.9E-4 T 11-10-2018 IPR000014 PAS domain AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 6.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 6.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 6.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 194 9.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SMART SM00388 137 201 4.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Gene3D G3DSA:3.30.565.10 200 362 1.7E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SUPERFAMILY SSF55785 9 87 7.85E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Gene3D G3DSA:3.30.450.20 9 120 5.7E-13 T 11-10-2018 AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 361 1.9E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 SUPERFAMILY SSF55874 203 361 3.41E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_08915 22c5f02d6df359fbdf1907ce5d9389f3 369 Pfam PF00989 PAS fold 8 99 1.9E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 SUPERFAMILY SSF56014 120 278 1.83E-42 T 11-10-2018 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 408 544 2.6E-10 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 330 396 1.3E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 110 4.6E-16 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Gene3D G3DSA:3.30.413.10 119 315 1.1E-73 T 11-10-2018 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 2.0E-40 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 SUPERFAMILY SSF56014 406 545 7.07E-39 T 11-10-2018 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 SUPERFAMILY SSF55124 1 125 3.11E-29 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Gene3D G3DSA:3.90.480.10 53 387 1.1E-73 T 11-10-2018 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 Gene3D G3DSA:3.30.413.10 406 547 8.9E-31 T 11-10-2018 AMD27_12825 1fb0946f2597c3d8fb522df0d64505ed 547 SUPERFAMILY SSF55124 253 419 1.96E-22 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 Pfam PF01106 NifU-like domain 127 198 8.6E-20 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 16 211 40.236 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 Gene3D G3DSA:2.60.300.12 17 113 1.0E-8 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 18 211 1.4E-86 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 SUPERFAMILY SSF89360 14 110 2.94E-19 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 198 1.0E-27 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 SUPERFAMILY SSF117916 111 204 5.45E-21 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 112 1.1E-6 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMD27_04105 12de3adeb7c7012be9f95df1a49cd85b 212 Gene3D G3DSA:3.30.300.130 121 210 5.2E-20 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.2E-24 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 6.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 6.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 6.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 6.2E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 Gene3D G3DSA:1.20.5.1150 16 54 1.2E-20 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 Pfam PF01165 Ribosomal protein S21 3 55 4.1E-22 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 5.0E-10 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10020 c349c11dd68e8fcbfad6a09541def5d4 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_11440 5f2f263d4c3d522d28e6a472affa9a70 291 Gene3D G3DSA:1.10.530.10 42 217 6.3E-48 T 11-10-2018 AMD27_11440 5f2f263d4c3d522d28e6a472affa9a70 291 Pfam PF01464 Transglycosylase SLT domain 93 199 8.6E-30 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_11440 5f2f263d4c3d522d28e6a472affa9a70 291 SUPERFAMILY SSF53955 89 211 8.0E-48 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 Gene3D G3DSA:2.40.230.10 120 382 1.5E-89 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 Pfam PF02253 Phospholipase A1 116 378 2.7E-106 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 SUPERFAMILY SSF56931 117 382 3.01E-93 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 213 232 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 190 206 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 243 257 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 293 311 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 329 346 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 168 185 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 258 276 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_07565 e1949eb541b40ddb09436c9fe2a0ef39 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 351 371 1.5E-37 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMD27_13125 b427c8adaeac4cce8f1a7152e893d837 173 Gene3D G3DSA:1.20.141.10 2 173 4.4E-48 T 11-10-2018 AMD27_13125 b427c8adaeac4cce8f1a7152e893d837 173 SUPERFAMILY SSF53955 2 168 2.36E-40 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_13125 b427c8adaeac4cce8f1a7152e893d837 173 Pfam PF09374 Predicted Peptidoglycan domain 106 162 2.5E-6 T 11-10-2018 IPR018537 Peptidoglycan binding domain AMD27_13125 b427c8adaeac4cce8f1a7152e893d837 173 Pfam PF05838 Glycosyl hydrolase 108 10 97 1.1E-17 T 11-10-2018 IPR008565 Protein of unknown function DUF847 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 6.9E-25 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.385 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 Pfam PF00471 Ribosomal protein L33 4 49 6.1E-18 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 Gene3D G3DSA:2.20.28.120 1 51 2.9E-28 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02205 0085f46dd607ca4be0ac10cf06490dfb 51 SUPERFAMILY SSF57829 1 49 1.28E-18 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMD27_06220 8cb5bde88b97e6737ed2f2398deb03ba 289 Pfam PF13612 Transposase DDE domain 105 257 1.4E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_06995 224adaf977a43b02f1277950fae529cb 285 Pfam PF09356 Phage conserved hypothetical protein BR0599 204 280 3.4E-25 T 11-10-2018 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal AMD27_06995 224adaf977a43b02f1277950fae529cb 285 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 1 175 1.3E-37 T 11-10-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal AMD27_06995 224adaf977a43b02f1277950fae529cb 285 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 25 280 3.2E-31 T 11-10-2018 IPR011928 Bacteriophage phiJL001, Gp84 AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 241 41.079 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 Pfam PF00696 Amino acid kinase family 11 220 7.0E-24 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 PIRSF PIRSF005650 4 242 2.7E-84 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 SUPERFAMILY SSF53633 8 241 3.53E-62 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 Gene3D G3DSA:3.40.1160.10 3 242 7.6E-66 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_08905 10ea8b14ba91afcea58d522547ea8a58 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 11 240 1.4E-93 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Gene3D G3DSA:2.20.110.10 188 271 6.6E-8 T 11-10-2018 AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Pfam PF07661 MORN repeat variant 153 173 0.015 T 11-10-2018 IPR011652 MORN variant AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Pfam PF07661 MORN repeat variant 106 125 0.63 T 11-10-2018 IPR011652 MORN variant AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Pfam PF07661 MORN repeat variant 176 197 0.065 T 11-10-2018 IPR011652 MORN variant AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Pfam PF07661 MORN repeat variant 201 221 0.17 T 11-10-2018 IPR011652 MORN variant AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Pfam PF07661 MORN repeat variant 224 244 0.011 T 11-10-2018 IPR011652 MORN variant AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 SUPERFAMILY SSF82185 149 259 5.75E-20 T 11-10-2018 AMD27_15010 3c2c811ee7093d7555f1ab5c512c6aee 274 Gene3D G3DSA:3.90.930.1 100 187 3.6E-12 T 11-10-2018 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Hamap MF_01113 DNA polymerase IV [dinB]. 1 350 36.139 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 SUPERFAMILY SSF100879 237 336 7.85E-20 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Gene3D G3DSA:3.30.1490.100 239 347 2.1E-18 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Pfam PF11798 IMS family HHH motif 168 195 7.9E-8 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Gene3D G3DSA:1.10.150.20 165 227 7.1E-18 T 11-10-2018 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 SUPERFAMILY SSF56672 1 233 3.47E-88 T 11-10-2018 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Pfam PF11799 impB/mucB/samB family C-terminal domain 232 346 2.9E-15 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Gene3D G3DSA:3.30.70.270 4 163 1.5E-62 T 11-10-2018 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Pfam PF00817 impB/mucB/samB family 7 153 9.3E-51 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_00820 b518ae43d86010b35fa5d10ce2c65846 351 Gene3D G3DSA:2.30.40.20 21 72 1.5E-62 T 11-10-2018 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Pfam PF01380 SIS domain 465 594 8.8E-25 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Pfam PF01380 SIS domain 288 420 7.2E-28 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 SUPERFAMILY SSF53697 244 612 9.28E-108 T 11-10-2018 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 612 40.188 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Gene3D G3DSA:3.40.50.10490 247 611 1.0E-141 T 11-10-2018 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Gene3D G3DSA:3.60.20.10 2 236 6.6E-76 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 SUPERFAMILY SSF56235 2 222 3.09E-70 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Gene3D G3DSA:3.40.50.10490 450 597 1.0E-141 T 11-10-2018 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 Pfam PF13522 Glutamine amidotransferase domain 66 181 2.8E-21 T 11-10-2018 AMD27_15640 d56c0a046aacdd05a679b833c57986b3 612 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 612 1.5E-251 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Pfam PF13180 PDZ domain 259 343 8.2E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Pfam PF13180 PDZ domain 371 454 7.8E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 SUPERFAMILY SSF50156 392 458 1.06E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 SMART SM00228 371 451 6.0E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 SMART SM00228 258 340 4.1E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Gene3D G3DSA:2.40.10.120 27 251 2.0E-74 T 11-10-2018 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Gene3D G3DSA:2.30.42.10 253 357 2.7E-28 T 11-10-2018 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Gene3D G3DSA:2.30.42.10 368 461 9.4E-16 T 11-10-2018 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 156 180 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 298 310 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 116 136 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 190 207 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 95 107 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 PRINTS PR00834 HtrA/DegQ protease family signature 212 229 7.4E-47 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 SUPERFAMILY SSF50156 239 346 1.48E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 28 454 1.2E-134 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 SUPERFAMILY SSF50494 10 267 4.91E-61 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMD27_05850 46fa651bb17e28eac66c5c941899978f 461 Pfam PF13365 Trypsin-like peptidase domain 86 219 1.2E-32 T 11-10-2018 AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 Gene3D G3DSA:1.10.10.10 2 92 7.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.8E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 Pfam PF03466 LysR substrate binding domain 94 289 5.0E-18 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 Gene3D G3DSA:3.40.190.10 169 267 5.4E-15 T 11-10-2018 AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 SUPERFAMILY SSF46785 4 81 2.12E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 SUPERFAMILY SSF53850 93 290 1.57E-21 T 11-10-2018 AMD27_05880 410384b3d6fe98894cda3b3f5d625088 295 Gene3D G3DSA:3.40.190.10 94 276 5.4E-15 T 11-10-2018 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 SMART SM00344 12 121 7.7E-40 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 4.0E-18 T 11-10-2018 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 SUPERFAMILY SSF46785 11 71 5.15E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 Gene3D G3DSA:3.30.70.920 66 148 1.5E-21 T 11-10-2018 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 Pfam PF01037 Lrp/AsnC ligand binding domain 84 146 2.6E-16 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 4.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 4.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 4.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 SUPERFAMILY SSF54909 82 161 5.23E-15 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_11120 e1aa7dbe0cf8ea91dd5030045428f132 164 Gene3D G3DSA:1.10.10.10 4 65 8.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PIRSF PIRSF000904 1 324 1.1E-115 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 SUPERFAMILY SSF56655 4 323 1.68E-103 T 11-10-2018 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 Gene3D G3DSA:3.40.190.80 188 324 2.0E-50 T 11-10-2018 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 140 163 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 324 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 171 194 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 197 224 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 26 53 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 63 89 2.4E-62 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 Gene3D G3DSA:3.30.540.10 3 187 2.9E-63 T 11-10-2018 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 324 43.363 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 PIRSF PIRSF500210 1 324 2.3E-117 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_10635 f9431f7f02e40bb614f8137f7300c19e 324 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 12 186 3.8E-57 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 SUPERFAMILY SSF54534 265 358 9.81E-20 T 11-10-2018 AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 Gene3D G3DSA:1.10.4030.30 38 191 2.7E-11 T 11-10-2018 AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 Gene3D G3DSA:3.10.50.40 256 389 5.0E-22 T 11-10-2018 AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 Pfam PF13624 SurA N-terminal domain 1 159 1.8E-36 T 11-10-2018 AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 SUPERFAMILY SSF109998 39 233 1.8E-23 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMD27_08720 300039f32877da41cb14d4ba91eeba10 621 Pfam PF13616 PPIC-type PPIASE domain 257 360 2.9E-23 T 11-10-2018 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Pfam PF12002 MgsA AAA+ ATPase C terminal 251 410 5.9E-67 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Gene3D G3DSA:1.10.3710.10 329 424 4.4E-31 T 11-10-2018 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Gene3D G3DSA:1.10.8.60 153 223 2.0E-8 T 11-10-2018 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Gene3D G3DSA:1.20.272.10 224 328 8.5E-46 T 11-10-2018 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Gene3D G3DSA:3.40.50.300 1 151 7.8E-44 T 11-10-2018 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Pfam PF16193 AAA C-terminal domain 182 250 2.6E-22 T 11-10-2018 IPR032423 AAA C-terminal domain AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 SMART SM00382 41 153 2.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 SUPERFAMILY SSF52540 4 219 4.57E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 SUPERFAMILY SSF48019 236 418 1.02E-72 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMD27_15760 5b4f74f85750c93e86140807400d37d8 424 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 45 148 7.5E-16 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 Pfam PF00849 RNA pseudouridylate synthase 62 192 3.8E-15 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 Gene3D G3DSA:3.30.70.580 62 226 3.0E-48 T 11-10-2018 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 9.0E-40 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 SUPERFAMILY SSF55120 49 230 1.76E-36 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 Pfam PF01479 S4 domain 4 42 1.0E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 SUPERFAMILY SSF55174 2 43 1.14E-5 T 11-10-2018 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 Gene3D G3DSA:3.30.70.1560 129 210 3.0E-48 T 11-10-2018 AMD27_09750 8db7601cbb23c55e1c627a73e5bae029 245 Gene3D G3DSA:3.10.290.10 1 48 5.8E-8 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 Gene3D G3DSA:3.40.47.10 6 298 2.2E-145 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 Gene3D G3DSA:3.40.47.10 125 396 2.2E-145 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 SUPERFAMILY SSF53901 279 400 1.29E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 SUPERFAMILY SSF53901 3 278 4.76E-64 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.5E-134 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 PIRSF PIRSF000429 1 401 1.2E-114 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 Pfam PF02803 Thiolase, C-terminal domain 278 399 4.1E-46 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMD27_03120 e43d115dc79ca7a32525adbe07bac157 401 Pfam PF00108 Thiolase, N-terminal domain 5 270 5.3E-52 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Pfam PF05193 Peptidase M16 inactive domain 208 390 1.8E-6 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Pfam PF00675 Insulinase (Peptidase family M16) 63 149 6.5E-7 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 SUPERFAMILY SSF63411 794 966 2.07E-39 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Gene3D G3DSA:3.30.830.10 499 949 1.2E-110 T 11-10-2018 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 SUPERFAMILY SSF63411 522 771 3.87E-52 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Gene3D G3DSA:3.30.830.10 260 488 5.8E-54 T 11-10-2018 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Gene3D G3DSA:3.30.830.10 4 255 1.9E-80 T 11-10-2018 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 SUPERFAMILY SSF63411 20 254 7.91E-41 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 SMART SM01264 466 715 1.4E-79 T 11-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 SUPERFAMILY SSF63411 262 523 2.09E-53 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Gene3D G3DSA:3.30.830.10 530 787 1.2E-110 T 11-10-2018 AMD27_07560 979cf3d765e54da9f95d0a23ea1dbe8f 979 Pfam PF08367 Peptidase M16C associated 466 715 2.3E-58 T 11-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 AMD27_04150 012b5fcf2ea8145e19e0da8c016f5fc6 224 Gene3D G3DSA:1.10.3810.10 45 223 4.3E-58 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_04150 012b5fcf2ea8145e19e0da8c016f5fc6 224 Pfam PF00912 Transglycosylase 52 218 2.0E-55 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_04150 012b5fcf2ea8145e19e0da8c016f5fc6 224 SUPERFAMILY SSF53955 50 221 1.43E-58 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_04150 012b5fcf2ea8145e19e0da8c016f5fc6 224 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 10 223 1.3E-93 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_04150 012b5fcf2ea8145e19e0da8c016f5fc6 224 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 4 224 36.959 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_10785 54df74c5ac0ee4fd4ca5a4514b786df6 366 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 24 338 3.2E-27 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_10785 54df74c5ac0ee4fd4ca5a4514b786df6 366 PIRSF PIRSF029347 1 366 4.8E-135 T 11-10-2018 IPR014555 RecF-like AMD27_10785 54df74c5ac0ee4fd4ca5a4514b786df6 366 Gene3D G3DSA:3.40.50.300 1 153 2.1E-11 T 11-10-2018 AMD27_10785 54df74c5ac0ee4fd4ca5a4514b786df6 366 Gene3D G3DSA:3.40.50.300 216 364 7.9E-9 T 11-10-2018 AMD27_10785 54df74c5ac0ee4fd4ca5a4514b786df6 366 SUPERFAMILY SSF52540 1 347 4.34E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 7.3E-42 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 SUPERFAMILY SSF50249 3 123 6.34E-51 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.21 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.4E-59 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.7E-68 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 Gene3D G3DSA:2.40.50.140 1 124 3.3E-62 T 11-10-2018 AMD27_03520 7c7b3416756e0725e721ae3cbe5099a9 124 PIRSF PIRSF002133 1 124 6.2E-53 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_05935 6a4e99d71bc550954a6043fc0da4c12d 218 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 63 211 1.3E-47 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMD27_05935 6a4e99d71bc550954a6043fc0da4c12d 218 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 10 60 2.3E-16 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMD27_05935 6a4e99d71bc550954a6043fc0da4c12d 218 SUPERFAMILY SSF47240 11 214 9.34E-72 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_05935 6a4e99d71bc550954a6043fc0da4c12d 218 PIRSF PIRSF020736 2 216 2.3E-86 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMD27_05935 6a4e99d71bc550954a6043fc0da4c12d 218 Gene3D G3DSA:1.20.1260.10 7 218 5.2E-73 T 11-10-2018 IPR012347 Ferritin-like AMD27_13305 9883b8bf57dbc9465fa3d36ff1b1ac6e 188 Pfam PF04011 LemA family 5 167 3.0E-33 T 11-10-2018 IPR007156 LemA AMD27_13305 9883b8bf57dbc9465fa3d36ff1b1ac6e 188 Gene3D G3DSA:1.20.1440.20 17 176 8.9E-29 T 11-10-2018 IPR023353 LemA-like domain superfamily AMD27_13305 9883b8bf57dbc9465fa3d36ff1b1ac6e 188 SUPERFAMILY SSF140478 25 164 1.44E-32 T 11-10-2018 IPR023353 LemA-like domain superfamily AMD27_10275 0516238985e174235185d5bc859d552c 439 Gene3D G3DSA:3.40.440.10 6 250 2.6E-97 T 11-10-2018 AMD27_10275 0516238985e174235185d5bc859d552c 439 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 437 4.2E-169 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_10275 0516238985e174235185d5bc859d552c 439 SUPERFAMILY SSF52540 3 438 3.19E-167 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10275 0516238985e174235185d5bc859d552c 439 SMART SM00788 4 432 5.2E-277 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_10275 0516238985e174235185d5bc859d552c 439 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_10275 0516238985e174235185d5bc859d552c 439 Gene3D G3DSA:3.90.170.10 268 439 3.7E-62 T 11-10-2018 AMD27_10275 0516238985e174235185d5bc859d552c 439 Gene3D G3DSA:1.10.300.10 102 202 2.6E-97 T 11-10-2018 AMD27_10275 0516238985e174235185d5bc859d552c 439 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_10275 0516238985e174235185d5bc859d552c 439 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 439 202.058 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_10275 0516238985e174235185d5bc859d552c 439 Pfam PF00709 Adenylosuccinate synthetase 5 431 9.7E-168 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMD27_13605 fca41185582e1b248704bb1d799d96ce 137 SMART SM00450 37 130 7.8E-15 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_13605 fca41185582e1b248704bb1d799d96ce 137 Pfam PF00581 Rhodanese-like domain 47 126 6.5E-12 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_13605 fca41185582e1b248704bb1d799d96ce 137 Gene3D G3DSA:3.40.250.10 37 136 6.5E-23 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_13605 fca41185582e1b248704bb1d799d96ce 137 SUPERFAMILY SSF52821 16 134 2.62E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 TIGRFAM TIGR00593 pola: DNA polymerase I 5 923 3.4E-293 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 727 740 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 652 674 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 810 821 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 842 858 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 870 883 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 697 720 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 788 799 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 751 776 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 675 690 1.7E-75 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:1.10.150.20 169 241 3.1E-92 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SUPERFAMILY SSF56672 521 923 1.33E-150 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SMART SM00475 1 256 1.8E-117 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:1.20.1060.10 542 655 1.8E-37 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:3.30.420.10 326 540 4.1E-70 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SUPERFAMILY SSF47807 166 280 8.37E-32 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SMART SM00482 683 887 2.2E-102 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Pfam PF00476 DNA polymerase family A 551 921 6.5E-151 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:3.40.50.1010 5 272 3.1E-92 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SUPERFAMILY SSF53098 332 517 7.59E-56 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SMART SM00474 329 516 2.3E-39 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Pfam PF01612 3'-5' exonuclease 329 515 2.4E-38 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 165 4.8E-51 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:1.10.150.20 706 849 4.4E-109 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SMART SM00279 168 203 3.4E-13 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 ProSitePatterns PS00447 DNA polymerase family A signature. 751 770 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Gene3D G3DSA:3.30.70.370 661 919 4.4E-109 T 11-10-2018 AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 SUPERFAMILY SSF88723 1 165 1.32E-53 T 11-10-2018 IPR029060 PIN-like domain superfamily AMD27_02830 c3725b45510fa47caa7802fb0cc1c2fe 923 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 259 4.2E-28 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 SUPERFAMILY SSF47384 211 286 3.92E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 SMART SM00387 334 444 9.6E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 287 2.8E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 SMART SM00388 226 288 2.9E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 441 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 3.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 SUPERFAMILY SSF55874 279 442 4.32E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 Gene3D G3DSA:3.30.565.10 290 442 2.3E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 442 4.3E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_07665 165fd9c2398fbf918f9608debe690bc0 450 Gene3D G3DSA:1.10.287.130 177 287 3.8E-18 T 11-10-2018 AMD27_17385 3275f03dff84e4e0df89a2eca12f8086 129 PIRSF PIRSF018297 2 128 9.4E-37 T 11-10-2018 IPR006440 Death on curing protein GO:0016301 AMD27_17385 3275f03dff84e4e0df89a2eca12f8086 129 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 9 121 4.8E-16 T 11-10-2018 IPR006440 Death on curing protein GO:0016301 AMD27_17385 3275f03dff84e4e0df89a2eca12f8086 129 Pfam PF02661 Fic/DOC family 29 86 1.3E-5 T 11-10-2018 IPR003812 Fido domain AMD27_17385 3275f03dff84e4e0df89a2eca12f8086 129 Gene3D G3DSA:1.20.120.1870 5 129 5.8E-32 T 11-10-2018 AMD27_00825 f06d29ef3de4751c0b0c98eb76787ef7 236 SUPERFAMILY SSF51445 22 223 1.16E-58 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMD27_00825 f06d29ef3de4751c0b0c98eb76787ef7 236 Pfam PF01183 Glycosyl hydrolases family 25 29 202 1.1E-44 T 11-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMD27_00825 f06d29ef3de4751c0b0c98eb76787ef7 236 Gene3D G3DSA:3.20.20.80 14 225 3.5E-68 T 11-10-2018 AMD27_00825 f06d29ef3de4751c0b0c98eb76787ef7 236 SMART SM00641 25 130 1.6E-10 T 11-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup AMD27_13210 93ee74f405ed928ce2bf6b721e09bd1e 329 SUPERFAMILY SSF69279 6 178 6.8E-22 T 11-10-2018 AMD27_13210 93ee74f405ed928ce2bf6b721e09bd1e 329 Pfam PF05954 Phage late control gene D protein (GPD) 90 314 3.5E-23 T 11-10-2018 AMD27_08205 8dcd6b173ce19bb3b2537effc54b8795 380 Gene3D G3DSA:2.40.180.20 91 351 3.0E-27 T 11-10-2018 AMD27_08205 8dcd6b173ce19bb3b2537effc54b8795 380 Pfam PF00199 Catalase 85 188 6.3E-10 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_08205 8dcd6b173ce19bb3b2537effc54b8795 380 Gene3D G3DSA:1.20.1280.120 83 362 3.0E-27 T 11-10-2018 AMD27_08205 8dcd6b173ce19bb3b2537effc54b8795 380 SUPERFAMILY SSF56634 81 373 2.49E-54 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_00015 9792f026c51db6ba41a62d584d206262 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 4.5E-82 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMD27_00015 9792f026c51db6ba41a62d584d206262 360 Gene3D G3DSA:1.20.1050.90 116 294 3.7E-75 T 11-10-2018 AMD27_00015 9792f026c51db6ba41a62d584d206262 360 SUPERFAMILY SSF52540 1 336 1.3E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00015 9792f026c51db6ba41a62d584d206262 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 337 1.1E-23 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMD27_00015 9792f026c51db6ba41a62d584d206262 360 Gene3D G3DSA:3.40.50.300 6 329 3.7E-75 T 11-10-2018 AMD27_00015 9792f026c51db6ba41a62d584d206262 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 76.876 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 SMART SM00842 12 179 0.0038 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 Pfam PF11104 Type IV pilus assembly protein PilM; 14 351 1.7E-132 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 Gene3D G3DSA:3.30.420.40 186 315 1.7E-83 T 11-10-2018 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 Gene3D G3DSA:3.30.1490.300 88 147 1.7E-83 T 11-10-2018 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 PIRSF PIRSF019169 2 352 1.3E-119 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 SUPERFAMILY SSF53067 12 177 3.88E-12 T 11-10-2018 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 SUPERFAMILY SSF53067 193 350 2.53E-24 T 11-10-2018 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 Gene3D G3DSA:3.30.420.40 13 349 1.7E-83 T 11-10-2018 AMD27_14640 a2e74f3c2069cfa33f69b6f1d78db5e2 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 11 351 7.4E-110 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM AMD27_14895 6def46223e605012c9568693319c3104 2958 Gene3D G3DSA:2.150.10.10 2660 2816 8.4E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_14895 6def46223e605012c9568693319c3104 2958 Gene3D G3DSA:2.150.10.10 151 233 4.3E-11 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_14895 6def46223e605012c9568693319c3104 2958 SUPERFAMILY SSF54523 2868 2954 2.98E-11 T 11-10-2018 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF03895 YadA-like membrane anchor domain 2902 2954 2.4E-5 T 11-10-2018 IPR005594 YadA-like, C-terminal AMD27_14895 6def46223e605012c9568693319c3104 2958 SUPERFAMILY SSF101967 158 367 1.06E-26 T 11-10-2018 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF13018 Extended Signal Peptide of Type V secretion system 6 25 2.3E-5 T 11-10-2018 IPR024973 ESPR domain AMD27_14895 6def46223e605012c9568693319c3104 2958 Gene3D G3DSA:3.30.1300.30 2859 2955 2.4E-14 T 11-10-2018 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05658 Head domain of trimeric autotransporter adhesin 278 304 5.7E-6 T 11-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Gene3D G3DSA:2.150.10.10 240 389 1.0E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 519 550 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2789 2833 4.7E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1347 1378 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2589 2627 2.9E-7 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1071 1102 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2313 2344 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 795 826 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 345 378 1.2E-8 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2037 2068 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1899 1930 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1761 1792 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1623 1654 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1485 1516 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1209 1240 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2451 2482 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 933 964 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2175 2206 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_14895 6def46223e605012c9568693319c3104 2958 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 657 688 1.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 Gene3D G3DSA:3.40.190.10 101 269 2.2E-36 T 11-10-2018 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 Gene3D G3DSA:1.10.10.10 5 94 5.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 SUPERFAMILY SSF46785 5 112 1.28E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 Gene3D G3DSA:3.40.190.10 161 260 2.2E-36 T 11-10-2018 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 Pfam PF03466 LysR substrate binding domain 89 269 7.0E-25 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 SUPERFAMILY SSF53850 91 269 3.08E-28 T 11-10-2018 AMD27_05155 64adb4b134fa09054553eafa8b0e8908 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.6E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_04020 28629bf821c15f91fe7cf97f95cfe5f6 717 Gene3D G3DSA:2.170.130.10 37 164 1.1E-18 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_04020 28629bf821c15f91fe7cf97f95cfe5f6 717 Pfam PF00593 TonB dependent receptor 209 714 2.1E-45 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_04020 28629bf821c15f91fe7cf97f95cfe5f6 717 Gene3D G3DSA:2.40.170.20 177 714 6.1E-91 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_04020 28629bf821c15f91fe7cf97f95cfe5f6 717 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 159 4.9E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_04020 28629bf821c15f91fe7cf97f95cfe5f6 717 SUPERFAMILY SSF56935 32 713 1.63E-109 T 11-10-2018 AMD27_01815 1758b1f18400fc2be89a33f0b1baeddc 420 SUPERFAMILY SSF53474 65 161 8.71E-7 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Gene3D G3DSA:3.40.50.300 280 550 8.0E-59 T 11-10-2018 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Gene3D G3DSA:1.10.287.380 551 634 3.6E-18 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Pfam PF16326 ABC transporter C-terminal domain 561 630 2.0E-18 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Gene3D G3DSA:3.40.50.300 4 278 1.8E-65 T 11-10-2018 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Pfam PF12848 ABC transporter 223 298 1.3E-11 T 11-10-2018 IPR032781 ABC-transporter extension domain AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 SUPERFAMILY SSF52540 3 242 5.49E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 SUPERFAMILY SSF52540 310 502 4.36E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 ProSitePatterns PS00211 ABC transporters family signature. 440 454 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Pfam PF00005 ABC transporter 19 183 5.1E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 Pfam PF00005 ABC transporter 339 468 2.1E-17 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 SMART SM00382 28 229 5.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_02140 38691a2be7c2a19b6a7340627ccb7273 634 SMART SM00382 344 514 2.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 1.7E-23 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 Pfam PF00381 PTS HPr component phosphorylation site 5 82 1.0E-23 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 SUPERFAMILY SSF55594 4 87 5.5E-24 T 11-10-2018 IPR035895 HPr-like superfamily AMD27_02675 209c8de665a335a5fcd3e96ae7a61300 89 Gene3D G3DSA:3.30.1340.10 1 88 4.5E-26 T 11-10-2018 IPR035895 HPr-like superfamily AMD27_14045 259fe8af46d307e62849665196db7fa9 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 6.0E-57 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.6E-47 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 Gene3D G3DSA:3.90.1170.10 1 137 9.4E-56 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.5E-37 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.5E-37 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.5E-37 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.5E-37 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 SUPERFAMILY SSF54686 1 134 6.67E-54 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14045 259fe8af46d307e62849665196db7fa9 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.706 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01165 42e0c44cd5ac0d1d1ffa8abaca53e40b 274 SMART SM00240 22 72 9.1E-12 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMD27_01165 42e0c44cd5ac0d1d1ffa8abaca53e40b 274 Gene3D G3DSA:2.60.200.20 1 100 5.2E-23 T 11-10-2018 AMD27_01165 42e0c44cd5ac0d1d1ffa8abaca53e40b 274 SUPERFAMILY SSF49879 2 98 1.32E-23 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMD27_01165 42e0c44cd5ac0d1d1ffa8abaca53e40b 274 Pfam PF00498 FHA domain 24 86 7.9E-18 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 Pfam PF00463 Isocitrate lyase family 317 400 7.4E-11 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 Pfam PF00463 Isocitrate lyase family 432 520 6.2E-10 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 Pfam PF00463 Isocitrate lyase family 97 270 1.1E-24 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 PIRSF PIRSF001362 416 532 2.5E-6 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 PIRSF PIRSF001362 2 276 5.7E-31 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 PIRSF PIRSF001362 290 410 1.8E-13 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 Gene3D G3DSA:3.20.20.60 410 532 1.1E-17 T 11-10-2018 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 Gene3D G3DSA:3.20.20.60 4 409 5.0E-93 T 11-10-2018 AMD27_11710 5a799f09f775da0faef508fd21a9c49e 533 SUPERFAMILY SSF51621 5 514 9.42E-123 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_15065 587f65a14edff462dea796efda409793 216 SUPERFAMILY SSF46894 143 206 3.13E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.4E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 SUPERFAMILY SSF52172 1 129 4.13E-29 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_15065 587f65a14edff462dea796efda409793 216 Pfam PF00072 Response regulator receiver domain 3 115 1.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15065 587f65a14edff462dea796efda409793 216 SMART SM00421 149 206 4.1E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 SMART SM00448 1 115 9.5E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15065 587f65a14edff462dea796efda409793 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.2E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_15065 587f65a14edff462dea796efda409793 216 Gene3D G3DSA:3.40.50.12740 1 209 2.4E-54 T 11-10-2018 AMD27_15065 587f65a14edff462dea796efda409793 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_06165 6b04de49cd520e96be94f718d11b109f 239 SUPERFAMILY SSF55166 101 231 4.71E-15 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_06165 6b04de49cd520e96be94f718d11b109f 239 Pfam PF08291 Peptidase M15 141 176 3.8E-5 T 11-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 AMD27_06165 6b04de49cd520e96be94f718d11b109f 239 Gene3D G3DSA:3.30.1380.10 132 230 5.2E-5 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_15825 308926fd20b16926e1a83d33efa4b122 218 SUPERFAMILY SSF55961 28 199 5.0E-33 T 11-10-2018 AMD27_15825 308926fd20b16926e1a83d33efa4b122 218 Pfam PF01852 START domain 43 198 5.6E-8 T 11-10-2018 IPR002913 START domain GO:0008289 AMD27_15825 308926fd20b16926e1a83d33efa4b122 218 Gene3D G3DSA:3.30.530.20 28 211 6.3E-45 T 11-10-2018 IPR023393 START-like domain superfamily AMD27_15825 308926fd20b16926e1a83d33efa4b122 218 PIRSF PIRSF039033 3 216 3.3E-42 T 11-10-2018 IPR028347 START domain-containing protein AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 5 92 3.0E-25 T 11-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 SMART SM01103 4 87 4.6E-37 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 86 1.0E-24 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 SUPERFAMILY SSF75471 4 97 1.2E-26 T 11-10-2018 IPR035920 YhbY-like superfamily AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 87 3.6E-21 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMD27_11595 cc88b46ac33e163e14b6ab03e10fb133 107 Gene3D G3DSA:3.30.110.60 2 103 5.5E-30 T 11-10-2018 IPR035920 YhbY-like superfamily AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 Pfam PF00550 Phosphopantetheine attachment site 7 73 1.4E-15 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 Gene3D G3DSA:1.10.1200.10 2 78 1.6E-25 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 7.0E-14 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 SUPERFAMILY SSF47336 2 77 1.96E-21 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 3 76 8.8E-29 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMD27_12470 e8aeb994af4db9c83d5a17804e0a32d1 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 20.243 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMD27_05680 7275a166a8332a7f1de52474fd862451 397 SUPERFAMILY SSF53474 22 393 9.73E-17 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 PIRSF PIRSF001549 1 428 4.9E-120 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 Gene3D G3DSA:3.30.930.10 2 325 3.6E-109 T 11-10-2018 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 416 9.6E-147 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 SUPERFAMILY SSF55681 7 324 6.43E-95 T 11-10-2018 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 SUPERFAMILY SSF52954 335 427 7.53E-17 T 11-10-2018 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 Pfam PF03129 Anticodon binding domain 344 426 1.3E-11 T 11-10-2018 IPR004154 Anticodon-binding AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 Pfam PF13393 Histidyl-tRNA synthetase 9 316 9.9E-44 T 11-10-2018 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 430 31.857 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMD27_13450 5080237ba002f7d94d7bbd1f233e9dea 431 Gene3D G3DSA:3.40.50.800 329 427 5.8E-27 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMD27_03560 44f57e342a8cc7bf6fd55fff60571add 516 Gene3D G3DSA:3.40.50.150 12 193 1.5E-11 T 11-10-2018 AMD27_03560 44f57e342a8cc7bf6fd55fff60571add 516 Pfam PF08241 Methyltransferase domain 50 148 2.2E-4 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMD27_03560 44f57e342a8cc7bf6fd55fff60571add 516 SUPERFAMILY SSF53335 32 168 3.34E-14 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_03560 44f57e342a8cc7bf6fd55fff60571add 516 Pfam PF10119 Predicted methyltransferase regulatory domain 218 301 6.5E-28 T 11-10-2018 IPR018773 Methyltransferase regulatory domain, predicted AMD27_07410 d64735e681053354bb4382877a7a324c 289 PIRSF PIRSF000103 1 287 2.6E-59 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_07410 d64735e681053354bb4382877a7a324c 289 SUPERFAMILY SSF48179 159 285 8.84E-29 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_07410 d64735e681053354bb4382877a7a324c 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_07410 d64735e681053354bb4382877a7a324c 289 SUPERFAMILY SSF51735 3 156 3.04E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07410 d64735e681053354bb4382877a7a324c 289 Gene3D G3DSA:1.10.1040.10 159 289 9.9E-32 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_07410 d64735e681053354bb4382877a7a324c 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 156 2.2E-39 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMD27_07410 d64735e681053354bb4382877a7a324c 289 Gene3D G3DSA:3.40.50.720 1 156 8.4E-44 T 11-10-2018 AMD27_07410 d64735e681053354bb4382877a7a324c 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 159 280 6.5E-37 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Gene3D G3DSA:3.30.470.20 193 356 1.8E-57 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 780 4.7E-64 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 SUPERFAMILY SSF56059 4 383 1.17E-103 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Gene3D G3DSA:3.20.20.60 477 788 3.1E-104 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 1.1E-25 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 PIRSF PIRSF000854 2 792 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Gene3D G3DSA:3.50.30.10 357 476 1.2E-41 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 SUPERFAMILY SSF51621 460 789 1.28E-100 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 785 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Gene3D G3DSA:3.30.1490.20 2 192 6.0E-70 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 1.9E-5 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 1.9E-5 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 1.9E-5 T 11-10-2018 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 343 1.1E-116 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMD27_06650 93469181bd4146189f0b7e6d050d1954 792 SUPERFAMILY SSF52009 347 466 1.07E-34 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMD27_11765 43bbd0e23f3f95f1b84cc8cb506918e0 395 ProSitePatterns PS01219 Ammonium transporters signature. 152 177 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMD27_11765 43bbd0e23f3f95f1b84cc8cb506918e0 395 Pfam PF00909 Ammonium Transporter Family 8 387 1.9E-84 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMD27_11765 43bbd0e23f3f95f1b84cc8cb506918e0 395 SUPERFAMILY SSF111352 2 370 1.57E-93 T 11-10-2018 AMD27_11765 43bbd0e23f3f95f1b84cc8cb506918e0 395 Gene3D G3DSA:1.10.3430.10 1 394 6.4E-98 T 11-10-2018 IPR029020 Ammonium/urea transporter AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 SMART SM00954 235 345 2.6E-6 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 SUPERFAMILY SSF109604 15 194 4.03E-59 T 11-10-2018 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 SUPERFAMILY SSF81271 381 440 1.5E-13 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 SUPERFAMILY SSF81301 198 354 2.94E-18 T 11-10-2018 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 Gene3D G3DSA:1.10.3210.10 6 194 8.9E-65 T 11-10-2018 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 Gene3D G3DSA:3.30.460.10 197 325 5.5E-7 T 11-10-2018 AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 SMART SM00471 47 157 8.1E-11 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 Gene3D G3DSA:3.10.20.30 375 444 2.8E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 Pfam PF13328 HD domain 32 178 4.3E-39 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_01575 278a38f3cde3955c996d577f58db6a36 702 Pfam PF02824 TGS domain 381 440 6.5E-14 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 Gene3D G3DSA:3.40.50.2300 1 122 4.8E-37 T 11-10-2018 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 223 3.8E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 Gene3D G3DSA:1.10.10.10 129 225 1.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 SMART SM00448 2 113 1.2E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 SUPERFAMILY SSF52172 2 131 3.7E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 SUPERFAMILY SSF46894 128 223 7.66E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 SMART SM00862 152 223 2.3E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_07670 29384876536c0bf0d05edb6c6bf6ab3b 226 Pfam PF00072 Response regulator receiver domain 4 113 3.0E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_10140 2ad03464758cc6394bf43f247a71ef82 112 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 83 6.4E-16 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMD27_10140 2ad03464758cc6394bf43f247a71ef82 112 SUPERFAMILY SSF54909 1 98 2.11E-23 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_10140 2ad03464758cc6394bf43f247a71ef82 112 Gene3D G3DSA:3.30.70.100 1 109 4.1E-28 T 11-10-2018 AMD27_05210 229889a367de9bc281109d61095bc21a 585 SMART SM00382 335 477 0.0011 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05210 229889a367de9bc281109d61095bc21a 585 SUPERFAMILY SSF160246 43 160 2.35E-6 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMD27_05210 229889a367de9bc281109d61095bc21a 585 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 64 162 4.8E-10 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal AMD27_05210 229889a367de9bc281109d61095bc21a 585 Gene3D G3DSA:3.40.50.300 311 583 2.7E-104 T 11-10-2018 AMD27_05210 229889a367de9bc281109d61095bc21a 585 Pfam PF00437 Type II/IV secretion system protein 214 474 8.6E-77 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_05210 229889a367de9bc281109d61095bc21a 585 Gene3D G3DSA:3.30.450.90 168 307 2.8E-41 T 11-10-2018 AMD27_05210 229889a367de9bc281109d61095bc21a 585 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 402 416 - T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_05210 229889a367de9bc281109d61095bc21a 585 SUPERFAMILY SSF52540 194 582 1.98E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09290 ebe46adcbb2962208bd38a6f66e5c4c4 460 Gene3D G3DSA:1.10.220.70 55 141 2.5E-32 T 11-10-2018 AMD27_09290 ebe46adcbb2962208bd38a6f66e5c4c4 460 PIRSF PIRSF018788 1 460 9.9E-233 T 11-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AMD27_09290 ebe46adcbb2962208bd38a6f66e5c4c4 460 Gene3D G3DSA:3.20.20.70 142 451 8.3E-147 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_09290 ebe46adcbb2962208bd38a6f66e5c4c4 460 Gene3D G3DSA:2.30.170.30 1 54 1.5E-23 T 11-10-2018 AMD27_09290 ebe46adcbb2962208bd38a6f66e5c4c4 460 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 443 2.2E-217 T 11-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 Gene3D G3DSA:3.40.50.1260 10 389 8.4E-155 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 SUPERFAMILY SSF53748 2 392 2.59E-136 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 Pfam PF00162 Phosphoglycerate kinase 6 383 1.4E-135 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 Gene3D G3DSA:3.40.50.1260 165 383 8.4E-155 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.7E-78 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 PIRSF PIRSF000724 1 395 5.2E-126 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07235 ef70b057292ba63820afd9d322c11b63 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 37.814 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_03385 5e51051d0467c631e018ab8e60fa2529 182 Gene3D G3DSA:2.20.70.10 1 35 7.9E-13 T 11-10-2018 AMD27_03385 5e51051d0467c631e018ab8e60fa2529 182 SUPERFAMILY SSF55811 3 162 9.75E-34 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_03385 5e51051d0467c631e018ab8e60fa2529 182 Pfam PF00293 NUDIX domain 44 143 4.1E-10 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_03385 5e51051d0467c631e018ab8e60fa2529 182 Gene3D G3DSA:3.90.79.10 36 180 6.5E-37 T 11-10-2018 AMD27_03385 5e51051d0467c631e018ab8e60fa2529 182 Pfam PF14803 Nudix N-terminal 3 34 4.7E-14 T 11-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 AMD27_11175 6388d7031ca798b52cf48a706ada46d5 325 SMART SM00978 192 323 1.7E-22 T 11-10-2018 IPR007379 Tim44-like domain AMD27_11175 6388d7031ca798b52cf48a706ada46d5 325 Pfam PF04280 Tim44-like domain 209 323 3.0E-8 T 11-10-2018 IPR007379 Tim44-like domain AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 73 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 267 1.7E-85 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 Gene3D G3DSA:1.10.8.100 205 270 3.1E-21 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 14 266 1.6E-65 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 SUPERFAMILY SSF53335 10 268 1.39E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 SMART SM00650 30 202 1.1E-81 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 269 57.686 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMD27_03005 a661ccd5662b1be5257ca5de40e2830f 270 Gene3D G3DSA:3.40.50.150 7 204 1.2E-67 T 11-10-2018 AMD27_05025 655d7d1dc7f2ecac99b44986a5b5c3a3 168 Pfam PF01609 Transposase DDE domain 4 162 3.1E-21 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 Gene3D G3DSA:3.40.50.12780 2 436 5.4E-108 T 11-10-2018 AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 525 9.1E-13 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 SUPERFAMILY SSF56801 10 536 1.1E-122 T 11-10-2018 AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 Gene3D G3DSA:3.30.300.310 437 538 8.0E-29 T 11-10-2018 AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 Pfam PF00501 AMP-binding enzyme 17 441 2.6E-80 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_07655 d546c0dd7739ea823b655724a56e245a 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_10325 51aa47b93a4fae4b30e4539766958efe 184 Pfam PF01292 Prokaryotic cytochrome b561 8 180 3.1E-25 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMD27_10325 51aa47b93a4fae4b30e4539766958efe 184 SUPERFAMILY SSF81342 3 180 2.43E-32 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Gene3D G3DSA:2.20.25.90 18 73 8.1E-16 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Pfam PF00384 Molybdopterin oxidoreductase 77 504 2.9E-80 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 SMART SM00926 17 74 1.0E-15 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 SUPERFAMILY SSF53706 19 616 1.96E-184 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 18 71 5.2E-17 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Pfam PF04324 BFD-like [2Fe-2S] binding domain 869 917 3.2E-11 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Gene3D G3DSA:1.10.10.1100 869 923 4.7E-5 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Gene3D G3DSA:3.40.50.740 91 594 3.3E-168 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 22 40 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 PIRSF PIRSF036643 2 757 5.5E-156 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Pfam PF01568 Molydopterin dinucleotide binding domain 614 725 2.2E-30 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Gene3D G3DSA:3.40.228.10 158 597 3.3E-168 T 11-10-2018 AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 SUPERFAMILY SSF50692 604 745 2.49E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMD27_07770 7c778eb526b31cdf5f7a6006c4082f07 926 Gene3D G3DSA:2.40.40.20 611 731 3.4E-38 T 11-10-2018 AMD27_11970 61cf2605862033b164c5468fdca375ca 333 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 175 3.8E-41 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMD27_11970 61cf2605862033b164c5468fdca375ca 333 Gene3D G3DSA:3.40.50.300 6 204 8.6E-46 T 11-10-2018 AMD27_11970 61cf2605862033b164c5468fdca375ca 333 SUPERFAMILY SSF52540 8 198 1.72E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07210 e4fdbeb32e29cb3d30b8ef611598463e 556 Pfam PF01645 Conserved region in glutamate synthase 180 497 7.1E-87 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMD27_07210 e4fdbeb32e29cb3d30b8ef611598463e 556 PIRSF PIRSF006429 32 556 3.2E-164 T 11-10-2018 IPR024188 Glutamate synthase large subunit-like protein AMD27_07210 e4fdbeb32e29cb3d30b8ef611598463e 556 SUPERFAMILY SSF51395 38 525 3.51E-131 T 11-10-2018 AMD27_07210 e4fdbeb32e29cb3d30b8ef611598463e 556 PIRSF PIRSF500060 35 556 6.2E-229 T 11-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria AMD27_07210 e4fdbeb32e29cb3d30b8ef611598463e 556 Gene3D G3DSA:3.20.20.70 118 529 9.4E-109 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Gene3D G3DSA:3.90.78.10 223 342 1.3E-39 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 SUPERFAMILY SSF56194 209 335 5.49E-44 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Gene3D G3DSA:3.30.43.10 1 72 1.4E-17 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 211 332 2.9E-31 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Pfam PF01565 FAD binding domain 22 145 5.1E-20 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Gene3D G3DSA:3.30.465.10 73 222 3.4E-50 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 70.869 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 SUPERFAMILY SSF56176 9 196 5.23E-34 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_07195 a6507288227f9bd02ad0fe3b76ec29b6 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 329 6.5E-60 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_02955 02908e542e2198b4358e31ff5cfda272 137 Pfam PF03259 Roadblock/LC7 domain 20 100 4.2E-7 T 11-10-2018 IPR004942 Roadblock/LAMTOR2 domain AMD27_02955 02908e542e2198b4358e31ff5cfda272 137 SMART SM00960 19 110 2.7E-7 T 11-10-2018 IPR004942 Roadblock/LAMTOR2 domain AMD27_02955 02908e542e2198b4358e31ff5cfda272 137 SUPERFAMILY SSF103196 20 132 5.58E-14 T 11-10-2018 AMD27_02955 02908e542e2198b4358e31ff5cfda272 137 Gene3D G3DSA:3.30.450.30 19 135 3.7E-16 T 11-10-2018 AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 Gene3D G3DSA:3.10.430.100 61 148 6.3E-29 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 SUPERFAMILY SSF55653 60 148 4.19E-26 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 3.0E-26 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 SUPERFAMILY SSF55658 1 57 9.77E-18 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 Gene3D G3DSA:3.40.5.10 1 50 5.8E-21 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 46 3.9E-20 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 4.4E-48 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06605 69e4c2fdef675b38e4d39e5b6859f7e8 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.457 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_02035 aa4b4e8fbd610c4b5c0aff2e8b710961 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 206 3.4E-34 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMD27_02035 aa4b4e8fbd610c4b5c0aff2e8b710961 336 Gene3D G3DSA:1.10.10.60 229 336 1.7E-25 T 11-10-2018 AMD27_02035 aa4b4e8fbd610c4b5c0aff2e8b710961 336 SUPERFAMILY SSF46689 284 333 7.17E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_02035 aa4b4e8fbd610c4b5c0aff2e8b710961 336 SMART SM00342 249 331 5.5E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_02035 aa4b4e8fbd610c4b5c0aff2e8b710961 336 Pfam PF12833 Helix-turn-helix domain 255 333 1.3E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 PIRSF PIRSF000709 1 79 5.7E-5 T 11-10-2018 AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 PIRSF PIRSF000709 88 160 140.0 T 11-10-2018 AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 164 1.3E-26 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 SUPERFAMILY SSF53254 1 166 7.4E-30 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 Gene3D G3DSA:3.40.50.1240 1 200 3.3E-33 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_17845 a91eda6feaf4701a43e7099810d951e4 200 SMART SM00855 2 158 8.3E-12 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_10525 e409028a62acb8fed5c40fbed37bf1c0 281 SUPERFAMILY SSF103515 181 281 5.89E-7 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily AMD27_10525 e409028a62acb8fed5c40fbed37bf1c0 281 Pfam PF05275 Copper resistance protein B precursor (CopB) 71 281 3.2E-49 T 11-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 AMD27_16050 33132a49d9843764e05188bae45223ef 443 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 60 360 2.1E-109 T 11-10-2018 IPR011970 Lytic murein transglycosylase AMD27_16050 33132a49d9843764e05188bae45223ef 443 Gene3D G3DSA:1.10.530.10 103 355 1.1E-81 T 11-10-2018 AMD27_16050 33132a49d9843764e05188bae45223ef 443 Gene3D G3DSA:1.10.101.10 364 436 3.9E-10 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMD27_16050 33132a49d9843764e05188bae45223ef 443 SUPERFAMILY SSF53955 51 360 6.94E-93 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_16050 33132a49d9843764e05188bae45223ef 443 Pfam PF13406 Transglycosylase SLT domain 61 356 4.3E-103 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 AMD27_16050 33132a49d9843764e05188bae45223ef 443 Pfam PF01471 Putative peptidoglycan binding domain 377 431 3.3E-11 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMD27_16050 33132a49d9843764e05188bae45223ef 443 SUPERFAMILY SSF47090 367 433 5.81E-15 T 11-10-2018 IPR036365 PGBD-like superfamily AMD27_16050 33132a49d9843764e05188bae45223ef 443 Gene3D G3DSA:1.10.8.350 75 236 1.1E-81 T 11-10-2018 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 PRINTS PR00502 NUDIX hydrolase family signature 33 47 6.1E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 PRINTS PR00502 NUDIX hydrolase family signature 47 62 6.1E-7 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 Gene3D G3DSA:3.90.79.10 1 155 7.5E-43 T 11-10-2018 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 Pfam PF00293 NUDIX domain 7 145 4.7E-22 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 SUPERFAMILY SSF55811 7 159 7.58E-30 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_01960 33cfce05ed439c2e97a2441e932935c2 166 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 35.756 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH AMD27_05225 354460238fe3d36f9f5296d23785d083 456 Gene3D G3DSA:3.30.565.10 300 451 2.4E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_05225 354460238fe3d36f9f5296d23785d083 456 Gene3D G3DSA:1.10.287.130 181 299 8.9E-21 T 11-10-2018 AMD27_05225 354460238fe3d36f9f5296d23785d083 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 451 1.0E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_05225 354460238fe3d36f9f5296d23785d083 456 SUPERFAMILY SSF55874 304 451 4.98E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_05225 354460238fe3d36f9f5296d23785d083 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 3.6E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_05225 354460238fe3d36f9f5296d23785d083 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 3.6E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_05225 354460238fe3d36f9f5296d23785d083 456 SMART SM00387 344 453 8.6E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_05225 354460238fe3d36f9f5296d23785d083 456 SMART SM00388 232 299 1.5E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_05225 354460238fe3d36f9f5296d23785d083 456 SUPERFAMILY SSF47384 215 298 6.87E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_05225 354460238fe3d36f9f5296d23785d083 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 297 3.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 SUPERFAMILY SSF63737 12 200 4.58E-36 T 11-10-2018 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Gene3D G3DSA:1.25.50.10 558 868 2.9E-68 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Gene3D G3DSA:2.60.40.1730 22 201 1.7E-62 T 11-10-2018 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 2.3E-8 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 SUPERFAMILY SSF55486 212 456 6.59E-71 T 11-10-2018 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Pfam PF01433 Peptidase family M1 domain 215 444 6.4E-54 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Gene3D G3DSA:2.60.40.1840 451 557 4.1E-25 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Gene3D G3DSA:1.10.390.10 287 450 4.9E-57 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 19 865 6.6E-294 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 560 867 2.6E-70 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 451 556 1.9E-23 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AMD27_09230 3ca57ff5dd3ffcf67f487dd5ebf9c251 869 Gene3D G3DSA:1.10.1740.60 202 286 1.1E-37 T 11-10-2018 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:3.30.1480.10 1 133 4.6E-35 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF54814 206 283 1.11E-28 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:1.10.150.20 358 426 2.9E-15 T 11-10-2018 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:3.30.300.20 204 282 3.1E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:3.30.300.20 283 351 1.3E-20 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF69705 1 131 7.06E-33 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:2.40.50.140 140 202 2.0E-13 T 11-10-2018 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF47794 360 419 2.98E-9 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Pfam PF14520 Helix-hairpin-helix domain 436 490 5.9E-8 T 11-10-2018 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SMART SM00316 138 203 9.2E-8 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Pfam PF00575 S1 RNA binding domain 138 200 5.3E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF54814 284 346 9.16E-11 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF47794 432 493 4.08E-14 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 1.5E-106 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Gene3D G3DSA:1.10.150.20 434 492 3.0E-21 T 11-10-2018 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 415 27.505 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Pfam PF08529 NusA N-terminal domain 4 128 2.0E-34 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 SUPERFAMILY SSF50249 137 204 1.39E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 Pfam PF13184 NusA-like KH domain 235 302 8.7E-28 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AMD27_01505 6c875d0d9268fd44d3cd12b12fbdd4d0 494 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 445 492 1.7E-13 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AMD27_13050 21eeff28698c09476455ec248fa03011 141 Gene3D G3DSA:2.20.25.10 1 43 3.5E-17 T 11-10-2018 AMD27_13050 21eeff28698c09476455ec248fa03011 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 138 6.3E-51 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMD27_13050 21eeff28698c09476455ec248fa03011 141 Pfam PF02566 OsmC-like protein 38 136 6.0E-18 T 11-10-2018 IPR003718 OsmC/Ohr family AMD27_13050 21eeff28698c09476455ec248fa03011 141 SUPERFAMILY SSF82784 1 139 5.23E-39 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMD27_13050 21eeff28698c09476455ec248fa03011 141 Gene3D G3DSA:3.30.300.20 44 140 1.0E-29 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_12545 43cc1422fa5747d952803940921bb76d 427 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 422 48.4 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 PIRSF PIRSF000521 177 422 1.9E-22 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 PIRSF PIRSF000521 18 145 1.0E-8 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 10 417 7.5E-181 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 Gene3D G3DSA:3.40.640.10 58 328 2.0E-165 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 240 277 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 Pfam PF00202 Aminotransferase class-III 23 418 5.8E-129 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 Gene3D G3DSA:3.90.1150.10 8 411 2.0E-165 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_12545 43cc1422fa5747d952803940921bb76d 427 SUPERFAMILY SSF53383 4 421 1.91E-128 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_12125 d29fc0651f664541bb6deae5bce8d75c 178 Gene3D G3DSA:2.30.30.40 34 152 4.8E-18 T 11-10-2018 AMD27_12125 d29fc0651f664541bb6deae5bce8d75c 178 SUPERFAMILY SSF50341 26 168 7.06E-28 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMD27_12125 d29fc0651f664541bb6deae5bce8d75c 178 Pfam PF01584 CheW-like domain 33 157 1.3E-22 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMD27_12125 d29fc0651f664541bb6deae5bce8d75c 178 SMART SM00260 27 164 3.4E-9 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMD27_12125 d29fc0651f664541bb6deae5bce8d75c 178 Gene3D G3DSA:2.40.50.180 50 116 4.8E-18 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 SUPERFAMILY SSF51905 376 608 9.58E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 Gene3D G3DSA:3.50.50.60 473 627 1.1E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 377 399 7.9E-7 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 497 521 7.9E-7 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 SUPERFAMILY SSF51395 3 363 8.18E-106 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 331 1.1E-84 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 1.6E-17 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 620 636 1.6E-17 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 461 479 1.6E-17 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 501 519 1.6E-17 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 Gene3D G3DSA:3.40.50.720 376 667 1.1E-114 T 11-10-2018 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 Gene3D G3DSA:3.20.20.70 3 369 4.3E-120 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_09180 9ba82ea5cd2289bcd1ae8c11f26b931f 674 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 645 4.6E-27 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 Gene3D G3DSA:3.40.47.10 69 408 6.8E-69 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 71 237 1.7E-20 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 SUPERFAMILY SSF53901 74 335 4.1E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 245 346 6.9E-28 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMD27_13360 b17d1e6fe9fe73b0bb907fea494a0120 408 SMART SM00825 Beta-ketoacyl synthase 18 408 4.4E-7 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Gene3D G3DSA:3.40.50.20 1 129 2.9E-44 T 11-10-2018 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 119 2.1E-40 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 162.048 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Gene3D G3DSA:3.30.1490.20 136 195 3.2E-24 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 SUPERFAMILY SSF56059 122 309 2.29E-55 T 11-10-2018 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 SUPERFAMILY SSF52440 1 121 1.64E-41 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 296 2.9E-77 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 310 3.8E-131 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMD27_15335 8d5fbe28e60ce1a079dc9117946e8c7b 314 Gene3D G3DSA:3.30.470.20 196 299 1.2E-39 T 11-10-2018 AMD27_09080 be57980b29feec006b50179565b334c9 574 Gene3D G3DSA:1.10.1160.10 284 363 3.1E-31 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 AMD27_09080 be57980b29feec006b50179565b334c9 574 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 50 361 6.0E-107 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMD27_09080 be57980b29feec006b50179565b334c9 574 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 23 570 49.307 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 AMD27_09080 be57980b29feec006b50179565b334c9 574 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_09080 be57980b29feec006b50179565b334c9 574 Gene3D G3DSA:2.40.240.10 372 486 2.1E-78 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_09080 be57980b29feec006b50179565b334c9 574 Gene3D G3DSA:3.90.800.10 124 232 2.1E-102 T 11-10-2018 AMD27_09080 be57980b29feec006b50179565b334c9 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 83 96 2.7E-7 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_09080 be57980b29feec006b50179565b334c9 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 233 243 2.7E-7 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_09080 be57980b29feec006b50179565b334c9 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 54 66 2.7E-7 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_09080 be57980b29feec006b50179565b334c9 574 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 364 549 1.0E-56 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_09080 be57980b29feec006b50179565b334c9 574 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 51 570 5.4E-226 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_09080 be57980b29feec006b50179565b334c9 574 Gene3D G3DSA:2.40.240.10 364 567 2.1E-78 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_09080 be57980b29feec006b50179565b334c9 574 SUPERFAMILY SSF52374 50 370 5.33E-92 T 11-10-2018 AMD27_09080 be57980b29feec006b50179565b334c9 574 Gene3D G3DSA:3.40.50.620 51 270 2.1E-102 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_09080 be57980b29feec006b50179565b334c9 574 SUPERFAMILY SSF50715 364 569 2.56E-68 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 407 418 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 267 280 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 469 482 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 138 151 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 191 204 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 205 220 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 281 294 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 162 170 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 PRINTS PR00415 Aconitase family signature 360 374 1.6E-27 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Gene3D G3DSA:3.30.499.10 361 566 4.1E-77 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 868 0.0 T 11-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Pfam PF00694 Aconitase C-terminal domain 661 793 1.8E-31 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 SUPERFAMILY SSF53732 11 592 9.94E-185 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Gene3D G3DSA:3.20.19.10 623 867 2.7E-82 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Pfam PF00330 Aconitase family (aconitate hydratase) 69 538 4.4E-145 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 SUPERFAMILY SSF52016 603 866 4.51E-68 T 11-10-2018 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Gene3D G3DSA:1.10.1440.20 567 622 3.0E-7 T 11-10-2018 AMD27_12715 34d2eefab78cd56c5cac6d35d9444b61 872 Gene3D G3DSA:3.30.499.20 3 360 3.2E-128 T 11-10-2018 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 11-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 Gene3D G3DSA:3.40.30.10 1 160 8.4E-71 T 11-10-2018 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 SUPERFAMILY SSF52833 2 158 4.02E-61 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 Pfam PF00255 Glutathione peroxidase 4 110 3.5E-39 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 PIRSF PIRSF000303 1 160 2.4E-68 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 PRINTS PR01011 Glutathione peroxidase family signature 122 131 5.2E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 5.2E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_06470 2b35d6d67cfd6524113415fa3273c8e7 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 5.2E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMD27_04565 3cbae22045e0f77b5b53374d8a54776f 87 Pfam PF00037 4Fe-4S binding domain 5 25 1.8E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMD27_04565 3cbae22045e0f77b5b53374d8a54776f 87 Gene3D G3DSA:3.30.70.20 2 81 1.2E-31 T 11-10-2018 AMD27_04565 3cbae22045e0f77b5b53374d8a54776f 87 SUPERFAMILY SSF54862 4 76 9.14E-19 T 11-10-2018 AMD27_04565 3cbae22045e0f77b5b53374d8a54776f 87 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_16445 7157c9c4aa4974dfac83aafdbe327b80 695 SMART SM00491 510 648 0.0011 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMD27_16445 7157c9c4aa4974dfac83aafdbe327b80 695 Gene3D G3DSA:3.40.50.300 27 280 2.0E-17 T 11-10-2018 AMD27_16445 7157c9c4aa4974dfac83aafdbe327b80 695 SUPERFAMILY SSF52540 45 644 2.1E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16445 7157c9c4aa4974dfac83aafdbe327b80 695 Gene3D G3DSA:3.40.50.300 464 659 8.0E-10 T 11-10-2018 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 Pfam PF01012 Electron transfer flavoprotein domain 4 169 4.0E-39 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 Gene3D G3DSA:3.40.50.1220 184 310 4.4E-54 T 11-10-2018 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 Gene3D G3DSA:3.40.50.620 2 183 1.3E-54 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 SMART SM00893 3 182 1.1E-52 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 SUPERFAMILY SSF52467 189 309 2.37E-44 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 3.9E-34 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 PIRSF PIRSF000089 1 310 8.3E-102 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMD27_11105 8ae14ef543e5d48202348c11a1ba3493 310 SUPERFAMILY SSF52402 2 186 1.0E-56 T 11-10-2018 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 SUPERFAMILY SSF102645 198 415 5.23E-73 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 SUPERFAMILY SSF52507 6 186 9.16E-63 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 Gene3D G3DSA:3.40.50.10300 197 419 4.5E-77 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 Pfam PF02441 Flavoprotein 11 183 2.3E-47 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 199 381 1.6E-70 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 9 410 1.2E-140 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AMD27_13625 7fdb138d63882cef174298faf07b93f3 421 Gene3D G3DSA:3.40.50.1950 4 194 3.3E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMD27_14470 ed0a63109ffa421d4034befe061b0f54 149 Gene3D G3DSA:2.40.128.520 20 149 4.7E-15 T 11-10-2018 AMD27_14470 ed0a63109ffa421d4034befe061b0f54 149 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 25 147 1.4E-21 T 11-10-2018 IPR019223 Domain of unknown function DUF2147 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 Gene3D G3DSA:3.10.310.10 4 270 1.1E-81 T 11-10-2018 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 Pfam PF02567 Phenazine biosynthesis-like protein 6 269 4.3E-57 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 232 2.6E-39 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 Gene3D G3DSA:3.10.310.10 117 263 1.1E-81 T 11-10-2018 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 SUPERFAMILY SSF54506 2 274 3.14E-68 T 11-10-2018 AMD27_05380 7a8898e851fe8a9f48e12f89545730c8 275 PIRSF PIRSF016184 1 275 2.0E-55 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 2.0E-26 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 Gene3D G3DSA:1.20.58.110 1 87 1.1E-27 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 Pfam PF01649 Ribosomal protein S20 2 84 4.7E-26 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 SUPERFAMILY SSF46992 3 86 3.92E-31 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 4.6E-28 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_08810 5666c64ff22c4795010b4f5d2b2a8da6 89 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.817 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 Gene3D G3DSA:3.90.1150.10 27 353 2.6E-108 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 11 364 56.648 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 Pfam PF00155 Aminotransferase class I and II 32 358 1.4E-53 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 360 1.6E-92 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 Gene3D G3DSA:3.40.640.10 45 271 2.6E-108 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_03345 f2cf22dad47930fcbdc19f11cdf97fb8 365 SUPERFAMILY SSF53383 12 361 2.95E-72 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 Gene3D G3DSA:1.20.58.100 423 538 2.4E-43 T 11-10-2018 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 PIRSF PIRSF000171 336 539 1.1E-17 T 11-10-2018 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 PIRSF PIRSF000171 1 288 1.7E-17 T 11-10-2018 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 SUPERFAMILY SSF51905 8 445 2.64E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 Pfam PF00890 FAD binding domain 11 390 1.0E-88 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 353 375 1.6E-7 T 11-10-2018 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 1.6E-7 T 11-10-2018 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 SUPERFAMILY SSF46977 423 528 6.28E-33 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 439 523 6.2E-15 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 Gene3D G3DSA:3.50.50.60 11 402 2.0E-146 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 Gene3D G3DSA:3.90.700.10 246 356 2.0E-146 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 SUPERFAMILY SSF56425 236 351 9.27E-41 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05845 b4f214635b1f087f5505acb4f0aed974 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 9 518 3.2E-187 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMD27_03690 bc5c083ba665bbf90ed0eead3e4e7e3e 347 Pfam PF00795 Carbon-nitrogen hydrolase 15 268 3.4E-45 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMD27_03690 bc5c083ba665bbf90ed0eead3e4e7e3e 347 SUPERFAMILY SSF56317 11 275 1.96E-53 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_03690 bc5c083ba665bbf90ed0eead3e4e7e3e 347 Hamap MF_01242 Aliphatic amidase [amiE]. 1 340 81.167 T 11-10-2018 IPR023719 Aliphatic amidase GO:0004040 KEGG: 00330+3.5.1.4|KEGG: 00360+3.5.1.4|KEGG: 00380+3.5.1.4|KEGG: 00627+3.5.1.4|KEGG: 00643+3.5.1.4|MetaCyc: PWY-3161|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMD27_03690 bc5c083ba665bbf90ed0eead3e4e7e3e 347 Gene3D G3DSA:3.60.110.10 1 347 1.2E-150 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_03240 4d213743e2cef144316980e00a9e8767 159 Gene3D G3DSA:3.30.1330.60 25 158 2.3E-37 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_03240 4d213743e2cef144316980e00a9e8767 159 ProSitePatterns PS01068 OmpA-like domain. 89 133 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMD27_03240 4d213743e2cef144316980e00a9e8767 159 SUPERFAMILY SSF103088 43 158 4.45E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_03240 4d213743e2cef144316980e00a9e8767 159 PRINTS PR01021 OMPA domain signature 87 102 1.7E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_03240 4d213743e2cef144316980e00a9e8767 159 PRINTS PR01021 OMPA domain signature 102 118 1.7E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_03240 4d213743e2cef144316980e00a9e8767 159 PRINTS PR01021 OMPA domain signature 57 79 1.7E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_03240 4d213743e2cef144316980e00a9e8767 159 Pfam PF00691 OmpA family 56 151 8.5E-21 T 11-10-2018 IPR006665 OmpA-like domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SMART SM00091 396 461 2.7E-4 T 11-10-2018 IPR000014 PAS domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Pfam PF13426 PAS domain 408 511 1.9E-7 T 11-10-2018 IPR000014 PAS domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SUPERFAMILY SSF141868 699 946 1.7E-82 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Gene3D G3DSA:3.30.450.20 285 392 5.7E-12 T 11-10-2018 AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SUPERFAMILY SSF55073 528 686 1.1E-33 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SUPERFAMILY SSF55785 408 518 1.61E-15 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Gene3D G3DSA:3.30.450.20 393 517 1.4E-17 T 11-10-2018 AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Pfam PF08447 PAS fold 316 382 7.5E-9 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SMART SM00267 512 684 2.9E-32 T 11-10-2018 IPR000160 GGDEF domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 525 682 1.8E-20 T 11-10-2018 IPR000160 GGDEF domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Pfam PF00563 EAL domain 700 934 2.2E-72 T 11-10-2018 IPR001633 EAL domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Gene3D G3DSA:3.30.70.270 518 696 1.2E-37 T 11-10-2018 AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 393 518 2.9E-10 T 11-10-2018 IPR000014 PAS domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SMART SM00086 470 512 14.0 T 11-10-2018 IPR001610 PAC motif AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SMART SM00086 343 388 7.0 T 11-10-2018 IPR001610 PAC motif AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SUPERFAMILY SSF55785 316 390 6.81E-8 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Gene3D G3DSA:3.20.20.450 697 948 1.0E-92 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 SMART SM00052 694 939 7.8E-103 T 11-10-2018 IPR001633 EAL domain AMD27_10860 c3f663c9899f233470dacd3d82effbe8 954 Pfam PF00990 Diguanylate cyclase, GGDEF domain 524 679 1.1E-29 T 11-10-2018 IPR000160 GGDEF domain AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.268 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SUPERFAMILY SSF55681 467 682 7.45E-46 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:3.30.56.10 7 179 2.0E-71 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:3.50.40.10 197 392 3.3E-73 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SMART SM00874 402 471 1.1E-22 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SMART SM00873 211 384 7.2E-87 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 8.9E-27 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Pfam PF01588 Putative tRNA binding domain 46 145 2.5E-27 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SUPERFAMILY SSF56037 206 393 1.94E-68 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Pfam PF03483 B3/4 domain 211 384 9.8E-66 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:2.40.50.140 39 154 2.0E-71 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:3.30.70.380 699 792 2.2E-28 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 4.0E-258 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SUPERFAMILY SSF54991 694 791 3.27E-29 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:3.30.56.10 400 474 1.9E-20 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SUPERFAMILY SSF50249 39 197 1.2E-51 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Pfam PF03484 tRNA synthetase B5 domain 408 471 1.3E-15 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SUPERFAMILY SSF46955 405 475 5.77E-16 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 Gene3D G3DSA:3.30.930.10 486 687 3.7E-50 T 11-10-2018 AMD27_02780 84c359d66226f142ce6b983c8556fc15 793 SMART SM00896 698 791 2.3E-39 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 Gene3D G3DSA:1.10.357.10 2 173 1.2E-35 T 11-10-2018 AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 6.4E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 SUPERFAMILY SSF48498 79 156 8.9E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 SUPERFAMILY SSF46689 5 74 6.16E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 6.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_15125 694d3e9ae598e6871287d2d4c212ac47 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 6.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_06110 fc69ad7658857e8cdfdb9fa6803045b8 186 Pfam PF03968 OstA-like protein 45 153 5.3E-26 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMD27_06110 fc69ad7658857e8cdfdb9fa6803045b8 186 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 32 175 1.9E-39 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AMD27_06110 fc69ad7658857e8cdfdb9fa6803045b8 186 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 12 176 24.125 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AMD27_06110 fc69ad7658857e8cdfdb9fa6803045b8 186 Gene3D G3DSA:2.60.450.10 34 179 5.6E-44 T 11-10-2018 AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SUPERFAMILY SSF50998 162 798 7.85E-153 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SMART SM00564 344 385 0.0011 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SMART SM00564 287 319 520.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SMART SM00564 218 249 2.2E-6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SMART SM00564 720 753 7.6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 SMART SM00564 414 463 470.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 12 797 0.0 T 11-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Pfam PF13360 PQQ-like domain 215 314 9.9E-5 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Pfam PF01011 PQQ enzyme repeat 447 473 8.7E-6 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Pfam PF01011 PQQ enzyme repeat 726 763 8.2E-7 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Pfam PF01011 PQQ enzyme repeat 360 392 1.1E-5 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Gene3D G3DSA:2.140.10.10 160 541 9.4E-107 T 11-10-2018 AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 Gene3D G3DSA:2.140.10.10 542 799 3.3E-39 T 11-10-2018 AMD27_04015 d9fff9c320c20dd13f495d850f484ddf 801 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 409 430 - T 11-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 6 110 31.794 T 11-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 157 246 1.3E-12 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 32 106 4.8E-34 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 55 109 3.0E-26 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 153 243 1.6E-24 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 150 243 19.158 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 SUPERFAMILY SSF141734 4 122 1.96E-48 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Gene3D G3DSA:3.10.20.400 2 97 4.0E-38 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 SUPERFAMILY SSF101386 151 247 3.11E-21 T 11-10-2018 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Gene3D G3DSA:1.10.287.1080 149 249 1.8E-25 T 11-10-2018 AMD27_14545 b7094e8e0c241c367b055eb5ba2df808 260 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 248 34.041 T 11-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 AMD27_01220 210692b88d052ef674b41067881a7f23 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.3E-23 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMD27_01220 210692b88d052ef674b41067881a7f23 142 SUPERFAMILY SSF54747 3 73 4.45E-31 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMD27_01220 210692b88d052ef674b41067881a7f23 142 SMART SM00649 9 141 7.9E-85 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMD27_01220 210692b88d052ef674b41067881a7f23 142 Gene3D G3DSA:3.30.1550.10 2 72 2.7E-36 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMD27_01220 210692b88d052ef674b41067881a7f23 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.132 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMD27_01220 210692b88d052ef674b41067881a7f23 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 141 - T 11-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_01220 210692b88d052ef674b41067881a7f23 142 Gene3D G3DSA:1.10.10.250 73 141 8.2E-27 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMD27_01220 210692b88d052ef674b41067881a7f23 142 SUPERFAMILY SSF46906 68 141 6.41E-25 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMD27_01220 210692b88d052ef674b41067881a7f23 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 3.0E-16 T 11-10-2018 AMD27_01220 210692b88d052ef674b41067881a7f23 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 5.4E-65 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01220 210692b88d052ef674b41067881a7f23 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 6.9E-32 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal AMD27_02565 6f071f47922de0879250524bf52dc97f 169 SUPERFAMILY SSF46955 9 131 5.13E-27 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_02565 6f071f47922de0879250524bf52dc97f 169 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 9 145 3.1E-58 T 11-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 Pfam PF13411 MerR HTH family regulatory protein 9 76 6.5E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 10 21 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 21 34 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 SMART SM00422 9 77 2.2E-20 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_02565 6f071f47922de0879250524bf52dc97f 169 Gene3D G3DSA:1.10.1660.10 1 132 1.5E-31 T 11-10-2018 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 Pfam PF01197 Ribosomal protein L31 1 78 9.6E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 SUPERFAMILY SSF143800 1 80 1.41E-20 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.3E-13 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 PRINTS PR01249 Ribosomal protein L31 signature 59 77 6.3E-13 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 PRINTS PR01249 Ribosomal protein L31 signature 44 59 6.3E-13 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 23.776 T 11-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 2.2E-16 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14325 9b9c3032b137c315365f782e5c88e4dd 82 Gene3D G3DSA:2.30.170.50 1 82 1.2E-20 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.70.1430 561 656 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82714 182 264 2.09E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:1.20.1640.10 507 1015 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.8E-59 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82693 560 651 9.42E-10 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.70.1430 40 809 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82866 798 1021 2.88E-48 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:1.20.1640.10 10 506 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.2090.10 706 801 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82693 138 323 2.67E-20 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.70.1440 657 858 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82693 40 132 7.32E-23 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82714 707 799 6.67E-9 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 SUPERFAMILY SSF82866 290 488 2.88E-46 T 11-10-2018 AMD27_12150 421089a86e91be0fbd8e3a52b2600968 1034 Pfam PF00873 AcrB/AcrD/AcrF family 5 1018 6.4E-267 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_15620 cabc5e77f5706c5a16547b46a9c1736c 149 Gene3D G3DSA:1.10.940.10 6 145 1.8E-45 T 11-10-2018 IPR035926 NusB-like superfamily AMD27_15620 cabc5e77f5706c5a16547b46a9c1736c 149 SUPERFAMILY SSF48013 10 142 1.83E-37 T 11-10-2018 IPR035926 NusB-like superfamily AMD27_15620 cabc5e77f5706c5a16547b46a9c1736c 149 Pfam PF01029 NusB family 13 137 1.1E-29 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMD27_15620 cabc5e77f5706c5a16547b46a9c1736c 149 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 12 139 2.7E-39 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMD27_15620 cabc5e77f5706c5a16547b46a9c1736c 149 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 10 141 21.144 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMD27_13675 c054e32b0398b9e199abb741ac45aa04 166 Pfam PF14539 Domain of unknown function (DUF4442) 23 156 2.9E-31 T 11-10-2018 IPR027961 Protein of unknown function DUF4442 AMD27_13675 c054e32b0398b9e199abb741ac45aa04 166 Gene3D G3DSA:3.10.129.10 10 162 4.7E-36 T 11-10-2018 AMD27_13675 c054e32b0398b9e199abb741ac45aa04 166 SUPERFAMILY SSF54637 25 162 6.75E-19 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_00785 72caf346ceecbfd2996ebaea87de0f24 180 SUPERFAMILY SSF52317 1 178 1.19E-41 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_00785 72caf346ceecbfd2996ebaea87de0f24 180 Gene3D G3DSA:3.40.50.880 1 180 8.2E-44 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_00785 72caf346ceecbfd2996ebaea87de0f24 180 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 6 178 7.6E-46 T 11-10-2018 IPR006286 Deglycase PfpI AMD27_00785 72caf346ceecbfd2996ebaea87de0f24 180 Pfam PF01965 DJ-1/PfpI family 3 177 3.0E-41 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.875 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.1E-31 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 SUPERFAMILY SSF54995 1 101 1.83E-36 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 Pfam PF01250 Ribosomal protein S6 3 91 3.3E-26 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 11-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_06615 fb23629f456d67e78e99c44caef6c438 128 Gene3D G3DSA:3.30.70.60 1 92 4.9E-30 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMD27_06675 4a54b516960b9919de66da1a69348d70 298 Pfam PF01758 Sodium Bile acid symporter family 11 195 1.9E-32 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMD27_06675 4a54b516960b9919de66da1a69348d70 298 Gene3D G3DSA:1.20.1530.20 3 282 3.0E-72 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 438 4.7E-11 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Gene3D G3DSA:3.40.120.10 2 147 1.9E-50 T 11-10-2018 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 SUPERFAMILY SSF55957 370 456 1.29E-19 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 6.7E-19 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Gene3D G3DSA:3.40.120.10 253 371 3.4E-30 T 11-10-2018 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 SUPERFAMILY SSF53738 261 366 1.14E-28 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Gene3D G3DSA:3.40.120.10 170 252 6.4E-28 T 11-10-2018 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 371 1.9E-22 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 SUPERFAMILY SSF53738 3 175 1.57E-37 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 3.1E-33 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 3.0E-28 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 3.0E-28 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 3.0E-28 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 3.0E-28 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 SUPERFAMILY SSF53738 152 259 2.86E-24 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_00450 943e4a8b0040ce4c2ce734ae345469eb 456 Gene3D G3DSA:3.30.310.50 372 456 3.2E-26 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SUPERFAMILY SSF56091 3 319 2.26E-111 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SUPERFAMILY SSF50249 322 401 2.74E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00532 5 451 4.5E-235 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:3.40.50.10190 590 672 5.5E-25 T 11-10-2018 IPR036420 BRCT domain superfamily AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SUPERFAMILY SSF52113 596 669 6.87E-16 T 11-10-2018 IPR036420 BRCT domain superfamily AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 PIRSF PIRSF001604 1 675 2.4E-240 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 667 1.4E-10 T 11-10-2018 IPR001357 BRCT domain AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00292 596 673 4.8E-9 T 11-10-2018 IPR001357 BRCT domain AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00278 517 536 8.8 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00278 549 568 240.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00278 485 504 4.3 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SMART SM00278 449 468 510.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 6 320 2.8E-124 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF14520 Helix-hairpin-helix domain 449 505 3.2E-4 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:1.10.287.610 1 72 9.6E-25 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF12826 Helix-hairpin-helix motif 516 578 1.5E-20 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:2.20.70.80 396 433 1.7E-13 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 666 9.9E-241 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Hamap MF_01588 DNA ligase [ligA]. 7 670 49.455 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 334 349 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 SUPERFAMILY SSF47781 407 588 4.45E-60 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:1.10.150.20 435 510 8.2E-27 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:1.10.150.20 511 589 8.9E-27 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:2.40.50.140 321 393 4.3E-32 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Gene3D G3DSA:3.30.470.90 73 320 4.9E-95 T 11-10-2018 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 325 399 3.3E-32 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMD27_12580 066b7e8805f6f836e9fb269ac8dc512b 679 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 410 437 1.5E-8 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 Gene3D G3DSA:3.30.420.40 157 320 6.1E-127 T 11-10-2018 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 Gene3D G3DSA:3.90.640.10 189 262 6.1E-127 T 11-10-2018 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 6.7E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 6.7E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 6.7E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 6.7E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 6.7E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 Gene3D G3DSA:3.30.420.40 14 330 6.1E-127 T 11-10-2018 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 Pfam PF06723 MreB/Mbl protein 13 337 2.9E-141 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 SUPERFAMILY SSF53067 10 151 2.21E-36 T 11-10-2018 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 337 1.9E-147 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMD27_11880 96698b1bbd4c6a32ab5299299788819a 346 SUPERFAMILY SSF53067 153 337 2.67E-48 T 11-10-2018 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Gene3D G3DSA:1.10.8.210 150 211 7.2E-8 T 11-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Gene3D G3DSA:3.40.50.720 1 113 2.2E-28 T 11-10-2018 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Pfam PF10414 Sirohaem synthase dimerisation region 152 208 1.1E-17 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Gene3D G3DSA:3.30.160.110 114 149 1.1E-14 T 11-10-2018 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Gene3D G3DSA:3.30.950.10 332 458 8.4E-48 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 SUPERFAMILY SSF75615 115 210 1.1E-25 T 11-10-2018 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 PIRSF PIRSF036426 1 458 1.5E-197 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Pfam PF13241 Putative NAD(P)-binding 7 116 5.0E-25 T 11-10-2018 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Hamap MF_01646 Siroheme synthase [cysG]. 1 458 49.314 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 4.4E-97 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 SUPERFAMILY SSF51735 2 113 3.22E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 208 7.5E-59 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 SUPERFAMILY SSF53790 211 456 3.66E-83 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Gene3D G3DSA:3.40.1010.10 215 331 1.7E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMD27_04335 58eadf7c9f6c53613bbffbe1ec7f426e 458 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 2.4E-53 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 SMART SM00862 151 227 6.9E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 227 1.6E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 Gene3D G3DSA:1.10.10.10 132 231 2.4E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 SMART SM00448 4 118 8.1E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 Gene3D G3DSA:3.40.50.2300 2 131 4.3E-36 T 11-10-2018 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 SUPERFAMILY SSF52172 5 130 3.98E-39 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 4 228 3.9E-101 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 Pfam PF00072 Response regulator receiver domain 6 119 5.7E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15545 37e3067f2e8a9d9db3a78edd39f490c6 236 SUPERFAMILY SSF46894 130 228 9.92E-30 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_13920 bef841d6713b556a7173bfc014ab2936 195 Gene3D G3DSA:1.20.1540.10 4 182 3.5E-12 T 11-10-2018 IPR035952 Rhomboid-like superfamily AMD27_13920 bef841d6713b556a7173bfc014ab2936 195 SUPERFAMILY SSF144091 13 187 2.75E-20 T 11-10-2018 AMD27_13920 bef841d6713b556a7173bfc014ab2936 195 Pfam PF01694 Rhomboid family 39 179 7.4E-11 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMD27_13920 bef841d6713b556a7173bfc014ab2936 195 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 28 179 5.9E-41 T 11-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria AMD27_05800 871655a87a6380485b638e5c586e26d0 353 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 2.1E-121 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 AMD27_05800 871655a87a6380485b638e5c586e26d0 353 SMART SM00382 27 214 1.3E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05800 871655a87a6380485b638e5c586e26d0 353 SUPERFAMILY SSF52540 3 243 4.48E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05800 871655a87a6380485b638e5c586e26d0 353 SUPERFAMILY SSF50331 240 348 1.36E-7 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMD27_05800 871655a87a6380485b638e5c586e26d0 353 Pfam PF00005 ABC transporter 18 164 4.9E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_05800 871655a87a6380485b638e5c586e26d0 353 Gene3D G3DSA:3.40.50.300 2 294 1.3E-80 T 11-10-2018 AMD27_05800 871655a87a6380485b638e5c586e26d0 353 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_17880 720c7257da587ec227d78f7c71e03618 103 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 41 96 8.7E-19 T 11-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system AMD27_05170 00f93b9d28b2b1ec4f0c58d5053008a4 463 Pfam PF16325 Peptidase family U32 C-terminal domain 365 444 1.1E-17 T 11-10-2018 IPR032525 Peptidase family U32, C-terminal AMD27_05170 00f93b9d28b2b1ec4f0c58d5053008a4 463 Gene3D G3DSA:2.40.30.10 361 445 1.6E-7 T 11-10-2018 AMD27_05170 00f93b9d28b2b1ec4f0c58d5053008a4 463 ProSitePatterns PS01276 Peptidase family U32 signature. 165 183 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AMD27_05170 00f93b9d28b2b1ec4f0c58d5053008a4 463 Pfam PF01136 Peptidase family U32 79 347 2.0E-94 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AMD27_03950 218136657c9b1f56c5c4be17b757d67e 355 SUPERFAMILY SSF50022 9 129 1.11E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_03950 218136657c9b1f56c5c4be17b757d67e 355 SUPERFAMILY SSF55961 133 330 4.67E-41 T 11-10-2018 AMD27_03950 218136657c9b1f56c5c4be17b757d67e 355 Pfam PF00355 Rieske [2Fe-2S] domain 19 100 2.9E-17 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMD27_03950 218136657c9b1f56c5c4be17b757d67e 355 Gene3D G3DSA:2.102.10.10 16 148 2.0E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 156 1.6E-66 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 SUPERFAMILY SSF54534 81 156 1.44E-16 T 11-10-2018 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 3.9E-24 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 PIRSF PIRSF006092 1 157 9.0E-39 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 SUPERFAMILY SSF46557 3 78 1.7E-25 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Gene3D G3DSA:3.10.50.30 77 159 8.0E-25 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 157 46.799 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 24.436 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Gene3D G3DSA:1.10.287.180 1 76 7.2E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11420 83ee5a20334b0d3a820cf4a61af1b594 164 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 4.3E-19 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 PIRSF PIRSF000414 1 524 3.2E-220 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Pfam PF02142 MGS-like domain 15 128 5.1E-30 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Gene3D G3DSA:3.40.140.20 209 365 5.0E-55 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Gene3D G3DSA:3.40.140.20 387 524 1.5E-60 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 524 45.056 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Gene3D G3DSA:3.40.50.1380 1 196 7.3E-85 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 SUPERFAMILY SSF53927 212 524 1.6E-128 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 SUPERFAMILY SSF52335 3 191 5.49E-71 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 524 2.6E-236 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 455 3.1E-116 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 SMART SM00851 15 128 2.5E-61 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain AMD27_09900 fe4360901116bb523b1af8c1c2cad420 524 SMART SM00798 133 456 2.1E-206 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 SUPERFAMILY SSF48024 29 141 1.57E-28 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 31 470 1.5E-162 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 1.2E-26 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 Pfam PF03796 DnaB-like helicase C terminal domain 212 468 1.6E-107 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 SUPERFAMILY SSF52540 210 461 3.55E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 Gene3D G3DSA:1.10.860.10 23 189 1.7E-42 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMD27_06600 cab33cb234d2768e025a1bb5ece46ade 481 Gene3D G3DSA:3.40.50.300 190 475 3.9E-101 T 11-10-2018 AMD27_07545 dcb650a89c4b4469ed448f5a515d1c27 204 Pfam PF07290 Protein of unknown function (DUF1449) 11 191 7.2E-21 T 11-10-2018 IPR010840 Protein of unknown function DUF1449 AMD27_16005 dda4240600710e9e536f9e3f1b93b8fe 324 Gene3D G3DSA:3.30.1380.10 168 293 6.8E-24 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_16005 dda4240600710e9e536f9e3f1b93b8fe 324 SUPERFAMILY SSF55166 175 294 4.45E-23 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_16005 dda4240600710e9e536f9e3f1b93b8fe 324 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 230 294 3.6E-12 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 PRINTS PR00070 Dihydrofolate reductase signature 104 118 5.2E-15 T 11-10-2018 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 PRINTS PR00070 Dihydrofolate reductase signature 33 41 5.2E-15 T 11-10-2018 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 PRINTS PR00070 Dihydrofolate reductase signature 19 29 5.2E-15 T 11-10-2018 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 PRINTS PR00070 Dihydrofolate reductase signature 46 57 5.2E-15 T 11-10-2018 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 PIRSF PIRSF000194 3 170 7.3E-52 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 19 41 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 Pfam PF00186 Dihydrofolate reductase 8 170 1.2E-52 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 SUPERFAMILY SSF53597 6 170 3.93E-48 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMD27_02260 3b4eb8417505191a26588663a57e9bdb 170 Gene3D G3DSA:3.40.430.10 6 170 5.7E-49 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 Gene3D G3DSA:1.10.1270.20 170 246 2.6E-30 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 102.232 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 Gene3D G3DSA:3.40.1280.10 1 169 3.2E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 238 1.9E-90 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 PIRSF PIRSF000386 1 246 1.5E-91 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 SUPERFAMILY SSF75217 1 243 1.11E-95 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_01675 3a7af1825ab4879a97fa6531e33ec6bc 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 225 8.3E-55 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMD27_11760 7b365128f0ad0a5b64c04315c4f3e0a5 164 SUPERFAMILY SSF69318 60 149 3.27E-6 T 11-10-2018 AMD27_12605 b077aa36427032331f534f9c8f1623be 252 Pfam PF02237 Biotin protein ligase C terminal domain 205 230 8.1E-6 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_12605 b077aa36427032331f534f9c8f1623be 252 SUPERFAMILY SSF55681 11 192 5.3E-36 T 11-10-2018 AMD27_12605 b077aa36427032331f534f9c8f1623be 252 Gene3D G3DSA:3.30.930.10 1 202 6.4E-38 T 11-10-2018 AMD27_12605 b077aa36427032331f534f9c8f1623be 252 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 26 246 2.8E-39 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_12605 b077aa36427032331f534f9c8f1623be 252 Pfam PF03099 Biotin/lipoate A/B protein ligase family 39 142 4.4E-9 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 Gene3D G3DSA:3.40.50.720 1 267 1.9E-63 T 11-10-2018 AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 SUPERFAMILY SSF51735 8 257 3.07E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 PIRSF PIRSF000094 3 263 3.5E-113 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.6E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.6E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 3.6E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.6E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13580 4c59ba6ea96f13c3ea7a2a19a2dbe7f0 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 255 2.7E-86 T 11-10-2018 AMD27_03925 2ea77b2520dfee78ad16ba665546fd2a 142 SUPERFAMILY SSF103473 1 134 3.4E-14 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_03925 2ea77b2520dfee78ad16ba665546fd2a 142 Gene3D G3DSA:1.20.1250.20 1 134 1.0E-12 T 11-10-2018 AMD27_03925 2ea77b2520dfee78ad16ba665546fd2a 142 Pfam PF07690 Major Facilitator Superfamily 2 134 3.3E-8 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 SUPERFAMILY SSF56176 423 508 1.5E-12 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 SUPERFAMILY SSF54631 284 418 1.02E-18 T 11-10-2018 AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 SMART SM01091 428 511 2.6E-10 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 Pfam PF03741 Integral membrane protein TerC family 14 204 1.6E-49 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 Gene3D G3DSA:3.30.465.10 429 511 4.7E-11 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 Pfam PF03471 Transporter associated domain 429 508 2.3E-12 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_07080 cb617d28931ce66b02d02fb2a482b713 512 Gene3D G3DSA:3.10.580.10 277 428 1.5E-36 T 11-10-2018 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Pfam PF00158 Sigma-54 interaction domain 140 306 2.2E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Gene3D G3DSA:1.10.10.60 401 476 3.9E-15 T 11-10-2018 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 454 474 4.4E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 454 4.4E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 SMART SM00448 6 117 1.2E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Gene3D G3DSA:1.10.8.60 311 377 8.2E-21 T 11-10-2018 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Gene3D G3DSA:3.40.50.2300 1 127 1.9E-29 T 11-10-2018 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 SUPERFAMILY SSF52172 6 185 3.98E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Pfam PF00072 Response regulator receiver domain 8 117 1.0E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Gene3D G3DSA:3.40.50.300 129 310 5.9E-60 T 11-10-2018 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 SMART SM00382 160 314 2.2E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 SUPERFAMILY SSF46689 354 474 1.3E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 SUPERFAMILY SSF52540 141 382 1.71E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMD27_00985 b039d211b30fd33bf15df92cf50e0bbf 477 Pfam PF02954 Bacterial regulatory protein, Fis family 431 471 2.1E-15 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.2E-22 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.2E-22 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.2E-22 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 Gene3D G3DSA:3.30.860.10 1 91 8.8E-39 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 SUPERFAMILY SSF54570 3 84 9.55E-34 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 4.6E-43 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 Pfam PF00203 Ribosomal protein S19 3 83 1.1E-34 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 PIRSF PIRSF002144 1 91 7.2E-31 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.564 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14060 5cdb93806056dc339adcf64e9aa7920e 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Pfam PF00472 RF-1 domain 212 321 3.6E-39 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 229 245 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Gene3D G3DSA:1.20.58.410 1 100 8.9E-27 T 11-10-2018 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 SUPERFAMILY SSF75620 15 346 1.83E-129 T 11-10-2018 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 4 347 9.9E-156 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 SMART SM00937 69 179 2.5E-57 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Pfam PF03462 PCRF domain 15 204 8.9E-60 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Gene3D G3DSA:3.30.160.20 210 305 7.5E-95 T 11-10-2018 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Gene3D G3DSA:3.30.70.1660 114 342 7.5E-95 T 11-10-2018 AMD27_15225 84fdd502acdb1e1efaa187282bc698b8 349 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 349 37.78 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 2.5E-67 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.0E-64 T 11-10-2018 IPR023798 Ribosomal protein S7 domain AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 SUPERFAMILY SSF47973 6 149 4.45E-59 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 PIRSF PIRSF002122 3 156 5.0E-58 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.115 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_03525 2f9794525ed12747ac653a871abdbf48 156 Gene3D G3DSA:1.10.455.10 2 155 3.2E-59 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMD27_00780 0ecb1505ed15b6b1d61d5f6e4a79669a 103 Pfam PF12796 Ankyrin repeats (3 copies) 26 100 1.1E-11 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMD27_00780 0ecb1505ed15b6b1d61d5f6e4a79669a 103 Gene3D G3DSA:1.25.40.20 10 101 3.8E-21 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_00780 0ecb1505ed15b6b1d61d5f6e4a79669a 103 SUPERFAMILY SSF48403 21 101 1.26E-19 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_00780 0ecb1505ed15b6b1d61d5f6e4a79669a 103 SMART SM00248 49 78 1.9E-4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMD27_10315 7df9ca4a01dedabd116c0737977e17f4 190 Gene3D G3DSA:3.30.420.10 1 189 2.8E-75 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_10315 7df9ca4a01dedabd116c0737977e17f4 190 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 182 37.163 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 AMD27_10315 7df9ca4a01dedabd116c0737977e17f4 190 Pfam PF01351 Ribonuclease HII 4 180 5.0E-41 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain AMD27_10315 7df9ca4a01dedabd116c0737977e17f4 190 SUPERFAMILY SSF53098 2 186 1.97E-66 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_03645 34c4acab12c904244926d868559dc201 105 Hamap MF_00460 Protein RnfH [rnfH]. 3 92 18.072 T 11-10-2018 IPR005346 RnfH protein AMD27_03645 34c4acab12c904244926d868559dc201 105 SUPERFAMILY SSF54285 4 76 5.04E-16 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMD27_03645 34c4acab12c904244926d868559dc201 105 Gene3D G3DSA:3.10.20.280 1 86 3.2E-23 T 11-10-2018 IPR037021 RnfH superfamily AMD27_03645 34c4acab12c904244926d868559dc201 105 Pfam PF03658 RnfH family Ubiquitin 4 84 3.0E-23 T 11-10-2018 IPR005346 RnfH protein AMD27_14010 afcdccf9396a5170d454aba281684b15 131 Pfam PF00410 Ribosomal protein S8 5 130 1.1E-47 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14010 afcdccf9396a5170d454aba281684b15 131 Gene3D G3DSA:3.30.1370.30 2 73 6.6E-28 T 11-10-2018 AMD27_14010 afcdccf9396a5170d454aba281684b15 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.263 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14010 afcdccf9396a5170d454aba281684b15 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14010 afcdccf9396a5170d454aba281684b15 131 Gene3D G3DSA:3.30.1490.10 74 130 2.3E-21 T 11-10-2018 AMD27_14010 afcdccf9396a5170d454aba281684b15 131 SUPERFAMILY SSF56047 2 130 1.7E-45 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_00840 c890eb65792540d1931932433c098e4b 525 Pfam PF03741 Integral membrane protein TerC family 17 205 6.2E-49 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMD27_00840 c890eb65792540d1931932433c098e4b 525 Gene3D G3DSA:3.30.465.10 443 523 5.6E-20 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_00840 c890eb65792540d1931932433c098e4b 525 Pfam PF00571 CBS domain 379 428 5.8E-4 T 11-10-2018 IPR000644 CBS domain AMD27_00840 c890eb65792540d1931932433c098e4b 525 Gene3D G3DSA:3.10.580.10 292 442 5.9E-39 T 11-10-2018 AMD27_00840 c890eb65792540d1931932433c098e4b 525 SUPERFAMILY SSF54631 297 431 2.56E-21 T 11-10-2018 AMD27_00840 c890eb65792540d1931932433c098e4b 525 SMART SM01091 442 522 2.6E-24 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_00840 c890eb65792540d1931932433c098e4b 525 SUPERFAMILY SSF56176 440 519 5.45E-19 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_00840 c890eb65792540d1931932433c098e4b 525 Pfam PF03471 Transporter associated domain 443 521 2.0E-18 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Pfam PF00563 EAL domain 441 675 8.4E-69 T 11-10-2018 IPR001633 EAL domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 SMART SM00267 252 423 4.9E-53 T 11-10-2018 IPR000160 GGDEF domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 419 4.7E-42 T 11-10-2018 IPR000160 GGDEF domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Gene3D G3DSA:3.30.70.270 257 437 1.5E-51 T 11-10-2018 AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 185 240 4.5E-6 T 11-10-2018 IPR005330 MHYT domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 53 110 1.6E-14 T 11-10-2018 IPR005330 MHYT domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 116 168 5.0E-14 T 11-10-2018 IPR005330 MHYT domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 Gene3D G3DSA:3.20.20.450 438 685 3.3E-92 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 SUPERFAMILY SSF55073 268 424 1.41E-43 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 SUPERFAMILY SSF141868 441 683 6.93E-85 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 261 422 9.0E-37 T 11-10-2018 IPR000160 GGDEF domain AMD27_02455 9f49619e9b2579aba4879d1eaabe14de 685 SMART SM00052 435 680 1.0E-103 T 11-10-2018 IPR001633 EAL domain AMD27_01755 0c79384481a25b12e00e60a70689de8f 104 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 6 90 2.4E-31 T 11-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane AMD27_01755 0c79384481a25b12e00e60a70689de8f 104 Pfam PF12823 Domain of unknown function (DUF3817) 4 90 3.7E-25 T 11-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane AMD27_03570 37b41012510dcef92125a09b36741343 1051 Pfam PF01580 FtsK/SpoIIIE family 671 885 4.5E-65 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMD27_03570 37b41012510dcef92125a09b36741343 1051 Gene3D G3DSA:3.40.50.300 668 971 5.6E-111 T 11-10-2018 AMD27_03570 37b41012510dcef92125a09b36741343 1051 Gene3D G3DSA:1.10.10.10 983 1050 1.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03570 37b41012510dcef92125a09b36741343 1051 Pfam PF09397 Ftsk gamma domain 991 1051 7.8E-27 T 11-10-2018 IPR018541 FtsK gamma domain AMD27_03570 37b41012510dcef92125a09b36741343 1051 SUPERFAMILY SSF46785 989 1051 9.52E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_03570 37b41012510dcef92125a09b36741343 1051 SMART SM00843 989 1051 8.2E-33 T 11-10-2018 IPR018541 FtsK gamma domain AMD27_03570 37b41012510dcef92125a09b36741343 1051 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 14 173 1.4E-26 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region AMD27_03570 37b41012510dcef92125a09b36741343 1051 Gene3D G3DSA:3.30.980.40 562 667 9.1E-32 T 11-10-2018 AMD27_03570 37b41012510dcef92125a09b36741343 1051 SUPERFAMILY SSF52540 645 958 2.45E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 5 402 45.55 T 11-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Pfam PF00579 tRNA synthetases class I (W and Y) 33 313 5.3E-79 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 164 179 2.5E-24 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 49 71 2.5E-24 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 2.5E-24 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 2.5E-24 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Gene3D G3DSA:1.10.240.10 221 327 5.7E-30 T 11-10-2018 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 9 401 6.0E-116 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 SUPERFAMILY SSF52374 8 312 1.74E-96 T 11-10-2018 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Pfam PF01479 S4 domain 347 387 1.8E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 SUPERFAMILY SSF55174 327 402 8.37E-11 T 11-10-2018 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Gene3D G3DSA:3.40.50.620 7 220 3.4E-76 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 Gene3D G3DSA:3.10.290.10 328 402 8.1E-8 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_00055 5b77d5dcca2b12c926085e893b4d1d46 404 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 55 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 SUPERFAMILY SSF51735 161 333 1.28E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 Gene3D G3DSA:3.90.180.10 6 364 5.5E-149 T 11-10-2018 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 Pfam PF00107 Zinc-binding dehydrogenase 197 330 3.0E-25 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 Gene3D G3DSA:3.40.50.720 174 312 5.5E-149 T 11-10-2018 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 SUPERFAMILY SSF50129 1 188 1.08E-69 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.8E-219 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 SMART SM00829 12 367 1.2E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 2.6E-25 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_08110 ebf13204e808b91c3074f78e76f8ef1b 369 SUPERFAMILY SSF50129 318 369 1.13E-11 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_07755 f721a22137d5ad54dd32f84a6efd879d 446 Pfam PF07690 Major Facilitator Superfamily 30 389 1.0E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_07755 f721a22137d5ad54dd32f84a6efd879d 446 Gene3D G3DSA:1.20.1250.20 14 209 5.7E-39 T 11-10-2018 AMD27_07755 f721a22137d5ad54dd32f84a6efd879d 446 SUPERFAMILY SSF103473 21 430 6.15E-55 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_07755 f721a22137d5ad54dd32f84a6efd879d 446 Gene3D G3DSA:1.20.1250.20 229 436 1.4E-29 T 11-10-2018 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 410 4.1E-151 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 420 40.99 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 Gene3D G3DSA:3.40.605.10 16 417 7.5E-162 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 349 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 SUPERFAMILY SSF53720 8 420 2.23E-120 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 PIRSF PIRSF000151 1 421 8.5E-177 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 Gene3D G3DSA:3.40.309.10 229 378 7.5E-162 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 Pfam PF00171 Aldehyde dehydrogenase family 312 377 3.4E-7 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_02430 0527610b593375b0f2920bffe6644ab9 421 Pfam PF00171 Aldehyde dehydrogenase family 16 286 4.8E-18 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_16895 6219538fb94bbfff22761763bdba5cf7 215 SUPERFAMILY SSF50249 4 148 1.2E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_16895 6219538fb94bbfff22761763bdba5cf7 215 Pfam PF00436 Single-strand binding protein family 4 94 2.1E-10 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMD27_16895 6219538fb94bbfff22761763bdba5cf7 215 Gene3D G3DSA:2.40.50.140 1 128 8.3E-15 T 11-10-2018 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 Gene3D G3DSA:3.40.190.10 22 213 7.7E-69 T 11-10-2018 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 160 181 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 Gene3D G3DSA:3.40.190.10 112 193 7.7E-69 T 11-10-2018 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 21 201 1.0E-55 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 SUPERFAMILY SSF53850 19 225 1.17E-63 T 11-10-2018 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 20 225 54.188 T 11-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AMD27_03335 2af37d9f811d9d89d2b610b85548da6e 233 Pfam PF01634 ATP phosphoribosyltransferase 70 221 1.0E-47 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMD27_14855 300443238f0c29019ea1d0677696207b 238 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 33.51 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 AMD27_14855 300443238f0c29019ea1d0677696207b 238 Gene3D G3DSA:1.20.1080.10 1 229 4.1E-82 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 ProSitePatterns PS00221 MIP family signature. 60 68 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 Pfam PF00230 Major intrinsic protein 2 221 1.1E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 SUPERFAMILY SSF81338 2 226 2.09E-66 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 42 66 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 79 98 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 165 187 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 204 224 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 2 21 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 PRINTS PR00783 Major intrinsic protein family signature 135 153 9.7E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14855 300443238f0c29019ea1d0677696207b 238 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 1.5E-59 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 Gene3D G3DSA:3.30.230.40 1 91 1.0E-37 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 SUPERFAMILY SSF54211 90 180 8.22E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 Gene3D G3DSA:3.30.230.40 92 197 2.5E-38 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 40.872 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 SUPERFAMILY SSF54211 4 88 3.29E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMD27_14790 cbe4ef57a03bba062618c4fed7210af2 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 1.6E-63 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Pfam PF00549 CoA-ligase 263 383 3.1E-25 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Gene3D G3DSA:3.40.50.261 241 388 3.2E-54 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 SUPERFAMILY SSF52210 240 386 4.06E-53 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Gene3D G3DSA:3.30.470.20 1 235 3.6E-88 T 11-10-2018 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 PIRSF PIRSF001554 1 388 4.6E-149 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Gene3D G3DSA:3.30.1490.20 21 105 3.6E-88 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 386 3.5E-160 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 258 282 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 42.606 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 SUPERFAMILY SSF56059 1 239 6.48E-79 T 11-10-2018 AMD27_04675 39056fdff0ca6770b72b6913cc8ec559 388 Pfam PF08442 ATP-grasp domain 2 203 5.8E-77 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 PRINTS PR01021 OMPA domain signature 185 200 3.8E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 PRINTS PR01021 OMPA domain signature 200 216 3.8E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 SUPERFAMILY SSF103088 149 261 3.66E-19 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 Pfam PF04355 SmpA / OmlA family 54 113 7.5E-8 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 Gene3D G3DSA:3.30.1330.60 137 262 3.9E-24 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_14890 3152b54f45576166f6b70eaccd401b6e 262 Pfam PF00691 OmpA family 165 239 3.3E-14 T 11-10-2018 IPR006665 OmpA-like domain AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 212 5.6E-24 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 SMART SM00342 256 338 2.7E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 2.2E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 2.2E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 Pfam PF12833 Helix-turn-helix domain 262 339 3.0E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 Gene3D G3DSA:1.10.10.60 237 341 3.5E-27 T 11-10-2018 AMD27_08045 0d4a84632ff7ac48b0065372c08b3818 343 SUPERFAMILY SSF46689 291 340 3.49E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 55 726 7.7E-68 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 Gene3D G3DSA:2.170.130.10 35 161 1.7E-20 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 156 4.5E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 Gene3D G3DSA:2.40.170.20 179 728 2.8E-57 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 SUPERFAMILY SSF56935 32 726 1.14E-89 T 11-10-2018 AMD27_03920 3ecd9bcb851b373bf21c3a5e4769b76a 730 Pfam PF00593 TonB dependent receptor 264 725 5.7E-34 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.688 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 1.0E-9 T 11-10-2018 AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 SUPERFAMILY SSF57840 1 38 6.8E-17 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 Pfam PF00444 Ribosomal protein L36 1 38 1.5E-19 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13975 f5cdb5dc1ed3eef5255996c3d6ed6b24 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 3.0E-21 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_15420 59632c390c27865a57a645cf3339878e 275 Gene3D G3DSA:3.40.50.300 33 275 1.3E-55 T 11-10-2018 AMD27_15420 59632c390c27865a57a645cf3339878e 275 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 34 275 2.8E-112 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AMD27_15420 59632c390c27865a57a645cf3339878e 275 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 253 274 4.4E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMD27_15420 59632c390c27865a57a645cf3339878e 275 Pfam PF00005 ABC transporter 50 205 8.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_15420 59632c390c27865a57a645cf3339878e 275 SUPERFAMILY SSF52540 35 273 2.5E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 6.9E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 6.9E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 6.9E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 6.9E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SUPERFAMILY SSF81923 1 141 2.62E-48 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Gene3D G3DSA:3.40.50.300 167 355 9.9E-65 T 11-10-2018 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Gene3D G3DSA:1.10.8.60 652 755 1.3E-27 T 11-10-2018 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Gene3D G3DSA:1.10.8.60 356 437 1.2E-31 T 11-10-2018 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SUPERFAMILY SSF52540 169 416 1.05E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 644 8.9E-48 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Gene3D G3DSA:1.10.1780.10 1 142 1.8E-37 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 6.7E-14 T 11-10-2018 IPR004176 Clp, N-terminal AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SUPERFAMILY SSF52540 436 727 9.13E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 732 2.1E-23 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SMART SM00382 486 653 2.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SMART SM00382 206 352 3.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 SMART SM01086 652 742 1.2E-26 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 734 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 302 314 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Gene3D G3DSA:3.40.50.300 438 650 7.2E-80 T 11-10-2018 AMD27_08960 4c00e3ae30a76cc96c81622bf3c4c568 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 305 4.3E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_03680 4f275b8db58cb8f7b5cfd5eb6996914e 1200 Gene3D G3DSA:3.40.50.300 1 311 1.9E-39 T 11-10-2018 AMD27_03680 4f275b8db58cb8f7b5cfd5eb6996914e 1200 Gene3D G3DSA:3.40.50.300 922 1200 8.1E-26 T 11-10-2018 AMD27_03680 4f275b8db58cb8f7b5cfd5eb6996914e 1200 Pfam PF13476 AAA domain 5 256 6.6E-26 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMD27_03680 4f275b8db58cb8f7b5cfd5eb6996914e 1200 SUPERFAMILY SSF52540 24 1178 3.93E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03680 4f275b8db58cb8f7b5cfd5eb6996914e 1200 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1102 1158 9.4E-11 T 11-10-2018 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 SMART SM00387 355 463 2.7E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 313 7.8E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 SUPERFAMILY SSF55874 315 467 5.63E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 SMART SM00304 206 259 1.3E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 SUPERFAMILY SSF47384 244 317 1.92E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 Gene3D G3DSA:1.10.287.130 203 314 1.9E-19 T 11-10-2018 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 Pfam PF00672 HAMP domain 206 251 9.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 461 8.2E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 9.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 9.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 9.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 SMART SM00388 260 319 2.3E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_14755 0e77a15a855fc95af2c824a9f219d0de 486 Gene3D G3DSA:3.30.565.10 322 468 8.4E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_13650 b55d7fdc87254006dd53e04d752c005b 101 SUPERFAMILY SSF54909 1 96 1.47E-26 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_13650 b55d7fdc87254006dd53e04d752c005b 101 Pfam PF03795 YCII-related domain 3 94 3.6E-20 T 11-10-2018 IPR005545 YCII-related AMD27_13650 b55d7fdc87254006dd53e04d752c005b 101 Gene3D G3DSA:3.30.70.1060 1 97 9.2E-31 T 11-10-2018 AMD27_15275 bd6d8a76153ceb11bf06a59954278ffa 191 Pfam PF01169 Uncharacterized protein family UPF0016 107 181 7.7E-24 T 11-10-2018 IPR001727 Gdt1 family AMD27_15275 bd6d8a76153ceb11bf06a59954278ffa 191 Pfam PF01169 Uncharacterized protein family UPF0016 7 80 7.5E-19 T 11-10-2018 IPR001727 Gdt1 family AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 Gene3D G3DSA:1.10.287.110 1 74 1.4E-17 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 Pfam PF00226 DnaJ domain 3 65 2.0E-9 T 11-10-2018 IPR001623 DnaJ domain AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 Gene3D G3DSA:1.20.1280.20 75 161 2.1E-17 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 82 152 5.9E-14 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 15 158 1.1E-25 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 SUPERFAMILY SSF47144 75 161 3.66E-17 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 160 16.855 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 SUPERFAMILY SSF46565 1 68 4.32E-14 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_08760 9a81d3b67f8308f5537e6d5cd219191b 171 SMART SM00271 1 61 3.0E-10 T 11-10-2018 IPR001623 DnaJ domain AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Gene3D G3DSA:3.40.50.300 111 276 1.9E-110 T 11-10-2018 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 154 3.7E-19 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Pfam PF00009 Elongation factor Tu GTP binding domain 14 278 2.2E-48 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 59 74 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 SUPERFAMILY SSF54980 394 469 7.91E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 SUPERFAMILY SSF52540 11 278 2.24E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 SUPERFAMILY SSF50447 263 394 1.03E-26 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 8 530 5.8E-259 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Gene3D G3DSA:3.40.50.300 73 380 1.9E-110 T 11-10-2018 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Gene3D G3DSA:3.30.70.3280 391 530 5.7E-53 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 5 528 51.183 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 Pfam PF16658 Class II release factor RF3, C-terminal domain 388 515 3.3E-47 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 PRINTS PR00315 GTP-binding elongation factor signature 138 147 2.0E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 PRINTS PR00315 GTP-binding elongation factor signature 16 29 2.0E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 PRINTS PR00315 GTP-binding elongation factor signature 102 113 2.0E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 PRINTS PR00315 GTP-binding elongation factor signature 66 74 2.0E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_02460 1c832216e226cf8997922a9686fa6f47 530 PRINTS PR00315 GTP-binding elongation factor signature 86 96 2.0E-12 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Gene3D G3DSA:3.30.870.10 322 506 1.3E-68 T 11-10-2018 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Pfam PF02503 Polyphosphate kinase middle domain 129 326 1.0E-57 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Pfam PF13090 Polyphosphate kinase C-terminal domain 336 684 1.3E-148 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 SUPERFAMILY SSF56024 505 685 4.04E-67 T 11-10-2018 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Pfam PF13089 Polyphosphate kinase N-terminal domain 14 119 2.5E-32 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 SUPERFAMILY SSF140356 11 115 8.76E-33 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 14 684 2.6E-271 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Gene3D G3DSA:3.30.870.10 509 690 9.7E-65 T 11-10-2018 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Hamap MF_00347 Polyphosphate kinase [ppk]. 11 688 26.952 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 SUPERFAMILY SSF56024 320 498 2.2E-54 T 11-10-2018 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 PIRSF PIRSF015589 1 691 1.1E-263 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 SUPERFAMILY SSF143724 117 317 5.69E-58 T 11-10-2018 AMD27_07390 6bcf9c920ee850e1ee161eca789b8137 692 Gene3D G3DSA:3.30.1840.10 6 317 9.1E-98 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Gene3D G3DSA:3.20.20.70 444 804 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Pfam PF00310 Glutamine amidotransferases class-II 25 439 1.2E-160 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMD27_14600 270168f3544918aa8566852abb134a41 1493 Pfam PF01645 Conserved region in glutamate synthase 806 1167 1.9E-147 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMD27_14600 270168f3544918aa8566852abb134a41 1493 SUPERFAMILY SSF51395 460 1200 3.57E-244 T 11-10-2018 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Gene3D G3DSA:3.20.20.70 496 1182 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Gene3D G3DSA:2.160.20.60 1222 1491 1.2E-96 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Pfam PF01493 GXGXG motif 1248 1435 1.5E-76 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMD27_14600 270168f3544918aa8566852abb134a41 1493 SUPERFAMILY SSF56235 25 443 6.66E-139 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_14600 270168f3544918aa8566852abb134a41 1493 SUPERFAMILY SSF69336 1223 1478 6.93E-87 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Pfam PF04898 Glutamate synthase central domain 470 749 3.8E-104 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AMD27_14600 270168f3544918aa8566852abb134a41 1493 Gene3D G3DSA:3.60.20.10 25 558 0.0 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Pfam PF07724 AAA domain (Cdc48 subfamily) 610 778 1.4E-40 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Gene3D G3DSA:3.40.50.300 563 783 1.1E-66 T 11-10-2018 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SMART SM01086 784 876 2.2E-4 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 784 853 2.1E-10 T 11-10-2018 IPR019489 Clp ATPase, C-terminal AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Gene3D G3DSA:3.40.50.300 370 557 1.7E-38 T 11-10-2018 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Gene3D G3DSA:1.10.1780.10 2 159 3.9E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Gene3D G3DSA:3.40.50.300 174 368 4.7E-64 T 11-10-2018 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Gene3D G3DSA:1.10.8.60 784 879 4.4E-10 T 11-10-2018 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 644 662 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 320 332 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SUPERFAMILY SSF81923 10 128 5.76E-18 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SMART SM00382 224 369 1.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SMART SM00382 610 763 2.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15980 442d10a7cb441188e05461579f4cec81 898 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 721 735 2.5E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 659 677 2.5E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 614 632 2.5E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 688 706 2.5E-30 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 11 868 0.0 T 11-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SUPERFAMILY SSF52540 559 855 1.17E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15980 442d10a7cb441188e05461579f4cec81 898 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 229 341 5.9E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_15980 442d10a7cb441188e05461579f4cec81 898 SUPERFAMILY SSF52540 185 511 3.49E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08880 67c0834c692af9711558f349c01f997d 451 SUPERFAMILY SSF50156 89 195 4.86E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_08880 67c0834c692af9711558f349c01f997d 451 SUPERFAMILY SSF50156 193 286 7.76E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_08880 67c0834c692af9711558f349c01f997d 451 SMART SM00228 209 278 2.3E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_08880 67c0834c692af9711558f349c01f997d 451 SMART SM00228 116 187 0.26 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_08880 67c0834c692af9711558f349c01f997d 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 1 451 1.3E-116 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AMD27_08880 67c0834c692af9711558f349c01f997d 451 Pfam PF02163 Peptidase family M50 10 436 3.6E-79 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMD27_08880 67c0834c692af9711558f349c01f997d 451 Gene3D G3DSA:2.30.42.10 219 310 1.9E-18 T 11-10-2018 AMD27_08880 67c0834c692af9711558f349c01f997d 451 Gene3D G3DSA:2.30.42.10 127 218 2.1E-19 T 11-10-2018 AMD27_08880 67c0834c692af9711558f349c01f997d 451 Pfam PF13180 PDZ domain 127 194 1.3E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_08880 67c0834c692af9711558f349c01f997d 451 Pfam PF13180 PDZ domain 223 285 3.9E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_10415 9b106afda26de598d86a9069399eb02c 100 Pfam PF04328 Selenoprotein, putative 38 100 1.8E-21 T 11-10-2018 IPR007423 Selenoprotein, putative AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 308 331 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 16 36 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 87 112 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 340 359 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 305 331 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 158 180 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 PRINTS PR00173 Glutamate-aspartate symporter signature 57 77 1.4E-30 T 11-10-2018 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 SUPERFAMILY SSF118215 22 415 7.32E-115 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 49 64 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 Gene3D G3DSA:1.10.3860.10 10 430 5.1E-117 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_06005 c78b14070981d2ef2b9100421e0a2f63 431 Pfam PF00375 Sodium:dicarboxylate symporter family 22 414 1.5E-104 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMD27_08350 b45e3c9b7c5402b602cd01bafe612121 357 Gene3D G3DSA:3.30.1930.10 176 298 3.5E-41 T 11-10-2018 AMD27_08350 b45e3c9b7c5402b602cd01bafe612121 357 Gene3D G3DSA:3.15.30.10 38 345 3.5E-41 T 11-10-2018 AMD27_08350 b45e3c9b7c5402b602cd01bafe612121 357 Pfam PF03864 Phage major capsid protein E 20 353 1.4E-45 T 11-10-2018 IPR005564 Major capsid protein GpE AMD27_14155 c29ebc6df5d754db7bc52b1006f89e48 210 Pfam PF00156 Phosphoribosyl transferase domain 118 207 1.2E-10 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_14155 c29ebc6df5d754db7bc52b1006f89e48 210 Gene3D G3DSA:3.40.50.2020 61 210 6.6E-17 T 11-10-2018 AMD27_14155 c29ebc6df5d754db7bc52b1006f89e48 210 SUPERFAMILY SSF53271 54 208 7.6E-21 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 SUPERFAMILY SSF111304 3 197 3.01E-73 T 11-10-2018 IPR023627 Recombination protein RecR AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 94.087 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 11-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 Pfam PF13662 Toprim domain 80 170 7.9E-24 T 11-10-2018 IPR006171 TOPRIM domain AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 Gene3D G3DSA:1.10.8.420 2 51 1.3E-13 T 11-10-2018 AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 Pfam PF02132 RecR protein 41 77 2.0E-12 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 SMART SM00493 79 164 2.0E-18 T 11-10-2018 IPR006171 TOPRIM domain AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 194 2.6E-73 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMD27_07430 080248eb419b8ca77c47888d13096e3f 198 Gene3D G3DSA:3.40.1360.10 76 197 3.1E-43 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Pfam PF00122 E1-E2 ATPase 346 526 8.3E-54 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 275 854 1.0E-179 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Gene3D G3DSA:3.40.50.1000 527 795 4.1E-81 T 11-10-2018 IPR023214 HAD superfamily AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Pfam PF00702 haloacid dehalogenase-like hydrolase 542 759 1.8E-33 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SUPERFAMILY SSF81653 348 445 1.96E-26 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SUPERFAMILY SSF56784 544 852 2.35E-51 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 254 854 3.3E-165 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 548 554 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Pfam PF04945 YHS domain 107 149 4.4E-13 T 11-10-2018 IPR007029 YHS domain AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Pfam PF04945 YHS domain 22 65 4.6E-16 T 11-10-2018 IPR007029 YHS domain AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SUPERFAMILY SSF47240 107 148 3.24E-5 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SMART SM00746 23 60 1.3E-8 T 11-10-2018 IPR011017 TRASH domain AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SMART SM00746 108 145 1.8E-9 T 11-10-2018 IPR011017 TRASH domain AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 692 702 3.9E-25 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 395 409 3.9E-25 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 745 764 3.9E-25 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 546 560 3.9E-25 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 768 780 3.9E-25 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 306 855 3.0E-112 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 529 544 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 722 739 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 315 334 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 779 793 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 468 482 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 PRINTS PR00943 Copper-transporting ATPase signature 335 353 2.0E-14 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Gene3D G3DSA:2.70.150.20 339 450 3.2E-36 T 11-10-2018 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SUPERFAMILY SSF81665 296 842 9.81E-17 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Gene3D G3DSA:3.40.1110.10 557 677 4.1E-81 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 SUPERFAMILY SSF47240 20 67 2.97E-5 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 Gene3D G3DSA:1.10.620.20 8 83 1.8E-5 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMD27_04780 fbc562efd0c78894b81139946f0e269b 857 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 317 838 4.4E-84 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMD27_04630 b1034160d6014ae5740ca9e50133e22a 510 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 10 499 5.2E-116 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 AMD27_04630 b1034160d6014ae5740ca9e50133e22a 510 Gene3D G3DSA:1.20.1250.20 3 501 4.5E-146 T 11-10-2018 AMD27_04630 b1034160d6014ae5740ca9e50133e22a 510 SUPERFAMILY SSF103473 15 497 7.19E-36 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_04630 b1034160d6014ae5740ca9e50133e22a 510 Pfam PF00854 POT family 91 466 1.8E-67 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 AMD27_04630 b1034160d6014ae5740ca9e50133e22a 510 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 154 166 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AMD27_12260 1317092e81b103e2e8d30af4ceeb077a 291 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 282 4.4E-20 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_12260 1317092e81b103e2e8d30af4ceeb077a 291 Gene3D G3DSA:3.40.50.1100 36 141 3.1E-61 T 11-10-2018 AMD27_12260 1317092e81b103e2e8d30af4ceeb077a 291 Gene3D G3DSA:3.40.50.1100 17 285 3.1E-61 T 11-10-2018 AMD27_12260 1317092e81b103e2e8d30af4ceeb077a 291 SUPERFAMILY SSF53686 16 287 1.58E-53 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_12260 1317092e81b103e2e8d30af4ceeb077a 291 PIRSF PIRSF006278 3 290 7.9E-70 T 11-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AMD27_12880 31ed2b7caa4e92b485aedeb869d54851 198 SUPERFAMILY SSF141523 56 196 1.44E-20 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_12880 31ed2b7caa4e92b485aedeb869d54851 198 Gene3D G3DSA:2.40.440.10 15 198 1.1E-14 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_12880 31ed2b7caa4e92b485aedeb869d54851 198 Pfam PF03734 L,D-transpeptidase catalytic domain 58 196 8.0E-15 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 344 427 3.1E-25 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 SUPERFAMILY SSF142019 21 244 3.14E-85 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Gene3D G3DSA:1.20.1440.230 340 441 6.9E-27 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Gene3D G3DSA:3.10.20.600 246 339 1.7E-28 T 11-10-2018 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Pfam PF10531 SLBB domain 259 303 2.1E-6 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 178 193 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 SUPERFAMILY SSF142984 254 337 1.09E-20 T 11-10-2018 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 SUPERFAMILY SSF140490 339 432 1.1E-30 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 355 366 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 59 230 5.9E-50 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 19 429 7.3E-179 T 11-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 SMART SM00928 342 387 1.0E-21 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12355 04e5f6f8e5eeea63ff8c3a9ef1548da1 443 Gene3D G3DSA:3.40.50.11540 64 241 6.4E-79 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 SUPERFAMILY SSF51735 1 122 4.23E-13 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 176 315 2.9E-19 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 Gene3D G3DSA:3.40.50.720 2 176 1.4E-37 T 11-10-2018 AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 318 2.2E-59 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 Gene3D G3DSA:1.10.1040.10 178 321 6.2E-26 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 SUPERFAMILY SSF48179 176 316 3.13E-21 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_10410 dffc1a0a3f5a514c5031fc3105b875d0 343 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 154 7.5E-30 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMD27_01935 17189846de883cb4905364fa774639ac 354 Pfam PF12706 Beta-lactamase superfamily domain 118 312 2.2E-38 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_01935 17189846de883cb4905364fa774639ac 354 SUPERFAMILY SSF56281 99 320 5.5E-31 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_01935 17189846de883cb4905364fa774639ac 354 Gene3D G3DSA:3.60.15.10 66 353 3.5E-73 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 88 359 2.1E-107 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 Pfam PF00448 SRP54-type protein, GTPase domain 159 359 1.6E-76 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 87 360 60.352 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 SUPERFAMILY SSF47364 58 138 2.62E-19 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 SUPERFAMILY SSF52540 157 360 4.14E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 Pfam PF02881 SRP54-type protein, helical bundle domain 79 140 7.4E-11 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 SMART SM00382 158 338 5.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 Gene3D G3DSA:1.20.120.140 60 358 9.7E-115 T 11-10-2018 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 Gene3D G3DSA:3.40.50.300 157 348 9.7E-115 T 11-10-2018 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 SMART SM00963 63 144 1.4E-23 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 333 346 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_07500 2ce43123faa404a3cb448ff3166700fc 363 SMART SM00962 159 360 5.9E-121 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 169 188 1.0E-10 T 11-10-2018 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 189 209 1.0E-10 T 11-10-2018 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 151 168 1.0E-10 T 11-10-2018 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 PRINTS PR01021 OMPA domain signature 151 167 1.5E-5 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 PRINTS PR01021 OMPA domain signature 103 125 1.5E-5 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 Gene3D G3DSA:3.30.1330.60 67 210 2.4E-42 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 ProSitePatterns PS01068 OmpA-like domain. 138 182 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 Pfam PF00691 OmpA family 102 200 4.1E-22 T 11-10-2018 IPR006665 OmpA-like domain AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 SUPERFAMILY SSF103088 83 206 5.49E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_03605 a5e82d799dcb25be5c4601599ba1323d 210 Pfam PF13441 YMGG-like Gly-zipper 25 67 1.2E-7 T 11-10-2018 IPR027367 YMGG-like Gly-zipper AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 Gene3D G3DSA:1.10.10.60 208 313 4.2E-24 T 11-10-2018 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 SUPERFAMILY SSF46689 210 260 3.54E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 Gene3D G3DSA:3.40.50.880 5 207 8.5E-47 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 Pfam PF01965 DJ-1/PfpI family 37 171 6.3E-14 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 SMART SM00342 227 310 9.7E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 SUPERFAMILY SSF46689 264 313 5.82E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 SUPERFAMILY SSF52317 6 192 2.78E-41 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 Pfam PF12833 Helix-turn-helix domain 233 311 2.2E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_05490 bacd3ff02f378c63a7a30e5b9a1a9b9d 325 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 306 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 Gene3D G3DSA:3.30.750.44 61 345 1.5E-68 T 11-10-2018 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 375 4.7E-69 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 SUPERFAMILY SSF52096 47 375 2.32E-62 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 Gene3D G3DSA:2.30.42.10 110 196 1.5E-68 T 11-10-2018 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 SMART SM00245 181 370 2.3E-48 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 Pfam PF03572 Peptidase family S41 208 368 1.5E-45 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMD27_00980 c545cdb0b4eefed167b26ada5302ed0a 393 Gene3D G3DSA:3.90.226.10 197 367 1.5E-68 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 SUPERFAMILY SSF54211 257 455 9.1E-39 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_11170 8d53048e7975e3988bf78121811819d2 463 Pfam PF13481 AAA domain 86 224 1.7E-11 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 431 3.9E-7 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 176 200 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 126 143 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 84 112 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 323 346 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 10 34 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 250 276 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 PRINTS PR01874 DNA repair protein radA signature 215 243 3.0E-92 T 11-10-2018 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 3.4E-192 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 Gene3D G3DSA:3.30.230.10 316 458 1.0E-16 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_11170 8d53048e7975e3988bf78121811819d2 463 SUPERFAMILY SSF52540 71 289 5.01E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_11170 8d53048e7975e3988bf78121811819d2 463 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 42.718 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMD27_11170 8d53048e7975e3988bf78121811819d2 463 SMART SM00382 92 247 9.2E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_11170 8d53048e7975e3988bf78121811819d2 463 Gene3D G3DSA:3.40.50.300 68 281 1.6E-39 T 11-10-2018 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 Gene3D G3DSA:3.20.20.140 76 393 3.1E-199 T 11-10-2018 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 Gene3D G3DSA:2.30.40.10 10 429 3.1E-199 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 Pfam PF01979 Amidohydrolase family 73 432 2.5E-72 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 SUPERFAMILY SSF51338 32 90 6.17E-8 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 32 431 4.2E-192 T 11-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 AMD27_16125 7dc3d41ceb4f13117198d719f693b77e 439 SUPERFAMILY SSF51556 75 378 1.28E-102 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 SUPERFAMILY SSF52440 3 96 1.73E-16 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 351 2.9E-112 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 Gene3D G3DSA:3.40.50.20 1 101 3.1E-25 T 11-10-2018 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 Gene3D G3DSA:3.30.470.20 173 371 1.2E-74 T 11-10-2018 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 SUPERFAMILY SSF51246 299 364 1.1E-16 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 SUPERFAMILY SSF56059 97 295 6.54E-64 T 11-10-2018 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 Gene3D G3DSA:3.30.1490.20 102 172 3.8E-26 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 Pfam PF02222 ATP-grasp domain 106 274 2.5E-56 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMD27_16055 d3d6e9631affab100a1231be4caef4cc 373 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 4 347 39.254 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMD27_08965 fbda59bc8c8d0f147af8a9e7e37f894b 141 Gene3D G3DSA:3.30.1390.10 36 141 1.6E-40 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMD27_08965 fbda59bc8c8d0f147af8a9e7e37f894b 141 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 52 135 28.126 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMD27_08965 fbda59bc8c8d0f147af8a9e7e37f894b 141 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 57 135 2.1E-33 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AMD27_08965 fbda59bc8c8d0f147af8a9e7e37f894b 141 SUPERFAMILY SSF54736 55 139 2.09E-31 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Gene3D G3DSA:3.30.230.10 225 337 8.2E-35 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 8 647 26.816 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Gene3D G3DSA:3.30.565.10 9 223 5.1E-64 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 SUPERFAMILY SSF54211 199 338 7.21E-34 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Pfam PF08676 MutL C terminal dimerisation domain 459 607 3.9E-42 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 SUPERFAMILY SSF118116 458 649 5.36E-55 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Gene3D G3DSA:3.30.1370.100 507 602 3.6E-52 T 11-10-2018 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 221 337 2.0E-35 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Gene3D G3DSA:2.30.42.20 465 644 3.6E-52 T 11-10-2018 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 147 4.9E-11 T 11-10-2018 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 SMART SM01340 220 338 8.9E-50 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 SMART SM00853 463 607 4.7E-44 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 SUPERFAMILY SSF55874 9 210 9.3E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 100 106 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site AMD27_09720 2bd8d2f9ffc93e318816ad30c2628178 651 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 9 318 2.1E-95 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 Gene3D G3DSA:3.50.50.60 4 297 8.1E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 Pfam PF14759 Reductase C-terminal 316 401 4.5E-19 T 11-10-2018 IPR028202 Reductase, C-terminal AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 297 1.6E-53 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 SUPERFAMILY SSF55424 310 401 3.57E-19 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 SUPERFAMILY SSF51905 143 306 4.34E-23 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 Gene3D G3DSA:3.50.50.60 113 238 8.1E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.1E-14 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.1E-14 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.1E-14 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 1.1E-14 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 1.7E-10 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.7E-10 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 1.7E-10 T 11-10-2018 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 Gene3D G3DSA:3.30.390.30 316 402 4.0E-17 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_03965 004e2f882e178c4f56a2b7a7277fd437 402 SUPERFAMILY SSF51905 3 191 6.48E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_11690 8493f19fe51cd4af33c3a0e19c3ec8c0 573 SMART SM00244 28 197 8.8E-7 T 11-10-2018 IPR001107 Band 7 domain AMD27_11690 8493f19fe51cd4af33c3a0e19c3ec8c0 573 Gene3D G3DSA:3.30.479.30 68 187 1.5E-27 T 11-10-2018 AMD27_11690 8493f19fe51cd4af33c3a0e19c3ec8c0 573 Pfam PF01145 SPFH domain / Band 7 family 41 185 6.6E-17 T 11-10-2018 IPR001107 Band 7 domain AMD27_11690 8493f19fe51cd4af33c3a0e19c3ec8c0 573 Pfam PF15975 Flotillin 427 552 3.5E-41 T 11-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 AMD27_11690 8493f19fe51cd4af33c3a0e19c3ec8c0 573 SUPERFAMILY SSF117892 59 199 5.49E-22 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 49 134 2.5E-36 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 SUPERFAMILY SSF55200 49 137 1.96E-32 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 Gene3D G3DSA:3.30.110.10 42 137 1.2E-36 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 136 2.9E-53 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 SUPERFAMILY SSF54364 2 44 1.44E-14 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 Gene3D G3DSA:3.10.20.80 1 41 1.8E-14 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMD27_02710 6e9ce850d2d0635f8edc340bfd6b985d 137 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 42 1.1E-13 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 216 1.2E-58 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 Gene3D G3DSA:3.30.70.260 127 198 2.9E-72 T 11-10-2018 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 SUPERFAMILY SSF75445 131 201 2.09E-22 T 11-10-2018 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 SUPERFAMILY SSF100950 7 149 1.05E-43 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 10 217 1.3E-63 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 7 220 32.553 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMD27_08995 bf93026f2673369d3fa2d9f688f910b6 223 Gene3D G3DSA:3.40.50.1360 11 212 2.9E-72 T 11-10-2018 AMD27_07275 cda32c6cd9eab02a3cb5ea6abb2befe8 363 Pfam PF00793 DAHP synthetase I family 53 348 1.5E-94 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_07275 cda32c6cd9eab02a3cb5ea6abb2befe8 363 Gene3D G3DSA:3.20.20.70 11 359 1.6E-151 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07275 cda32c6cd9eab02a3cb5ea6abb2befe8 363 PIRSF PIRSF001361 2 362 7.7E-158 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMD27_07275 cda32c6cd9eab02a3cb5ea6abb2befe8 363 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 16 357 3.8E-151 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMD27_07275 cda32c6cd9eab02a3cb5ea6abb2befe8 363 SUPERFAMILY SSF51569 16 357 2.72E-132 T 11-10-2018 AMD27_03070 6dc860a3a96a425476e920e96eab910c 140 SUPERFAMILY SSF55729 4 138 3.21E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_03070 6dc860a3a96a425476e920e96eab910c 140 Gene3D G3DSA:3.40.630.30 5 139 7.6E-36 T 11-10-2018 AMD27_03070 6dc860a3a96a425476e920e96eab910c 140 Pfam PF13673 Acetyltransferase (GNAT) domain 33 138 4.5E-22 T 11-10-2018 IPR000182 GNAT domain AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 SMART SM00841 133 188 5.0E-31 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Gene3D G3DSA:2.40.50.140 132 189 3.4E-27 T 11-10-2018 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 SUPERFAMILY SSF50104 2 63 7.52E-21 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 SUPERFAMILY SSF50249 69 130 3.0E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Gene3D G3DSA:2.30.30.30 1 65 3.4E-28 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Pfam PF09285 Elongation factor P, C-terminal 133 188 1.9E-24 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Gene3D G3DSA:2.40.50.140 66 131 3.4E-27 T 11-10-2018 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 PIRSF PIRSF005901 2 189 8.5E-63 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 SUPERFAMILY SSF50249 132 189 4.45E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 SMART SM01185 69 125 1.2E-23 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 125 4.1E-20 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Hamap MF_00141 Elongation factor P [efp]. 3 189 48.007 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 TIGRFAM TIGR00038 efp: translation elongation factor P 4 189 3.3E-75 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMD27_10425 86e35429ebb965bc3d48ce2e691d88c0 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 1.9E-25 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Pfam PF12631 MnmE helical domain 126 451 4.3E-56 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 221 373 8.2E-22 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 9 123 1.5E-35 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 SUPERFAMILY SSF52540 75 373 1.43E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 14 454 4.1E-105 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 8 454 32.325 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Pfam PF01926 50S ribosome-binding GTPase 221 337 4.4E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Gene3D G3DSA:3.40.50.300 220 382 2.6E-103 T 11-10-2018 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Gene3D G3DSA:1.20.120.430 125 454 2.6E-103 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 SUPERFAMILY SSF116878 124 454 1.15E-49 T 11-10-2018 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 Gene3D G3DSA:3.30.1360.120 2 124 9.8E-40 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 242 6.7E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_16155 d2e95bfa775e7acb26cab36e1475f117 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 289 307 6.7E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_15735 b3bca4358a12aef510a2e9e0a43e4f76 317 Pfam PF01758 Sodium Bile acid symporter family 43 220 1.1E-43 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMD27_15735 b3bca4358a12aef510a2e9e0a43e4f76 317 Gene3D G3DSA:1.20.1530.20 1 309 3.4E-119 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_01965 062725b1ea1d958ac73557d226710981 216 SUPERFAMILY SSF56784 1 200 2.47E-31 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_01965 062725b1ea1d958ac73557d226710981 216 Gene3D G3DSA:1.20.1440.100 15 88 2.0E-67 T 11-10-2018 AMD27_01965 062725b1ea1d958ac73557d226710981 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 186 1.6E-20 T 11-10-2018 AMD27_01965 062725b1ea1d958ac73557d226710981 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 183 1.5E-31 T 11-10-2018 AMD27_01965 062725b1ea1d958ac73557d226710981 216 Gene3D G3DSA:3.40.50.1000 3 211 2.0E-67 T 11-10-2018 IPR023214 HAD superfamily AMD27_01965 062725b1ea1d958ac73557d226710981 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 1.4E-38 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 56 74 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 SUPERFAMILY SSF50621 254 412 3.14E-49 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 1.0E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 56 74 1.0E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 76 88 1.0E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 1.0E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 189 202 1.0E-24 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 410 1.1E-159 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 1.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 74 91 1.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 1.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 163 172 1.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 368 5.5E-22 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 279 5.4E-72 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 227 240 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 Gene3D G3DSA:3.20.20.10 33 274 1.1E-145 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 Gene3D G3DSA:2.40.37.10 16 407 1.1E-145 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 411 40.514 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_11145 bd36cdd9ed0c6cac436520e0a875e2b8 416 SUPERFAMILY SSF51419 25 281 8.77E-79 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 Pfam PF00664 ABC transporter transmembrane region 24 291 1.1E-48 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 Gene3D G3DSA:3.40.50.300 326 574 1.2E-93 T 11-10-2018 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 SUPERFAMILY SSF90123 10 321 5.49E-67 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 8 574 2.0E-201 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 SUPERFAMILY SSF52540 327 570 1.66E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 SMART SM00382 360 547 4.9E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 Pfam PF00005 ABC transporter 352 501 3.4E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_09660 1bb676d72fef58a7cf35efe6dcdc18c0 574 Gene3D G3DSA:1.20.1560.10 1 324 1.1E-69 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:1.10.290.10 300 424 1.4E-154 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 773 808 3.2E-11 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 839 878 1.1E-17 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF01131 DNA topoisomerase 178 583 2.2E-124 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SUPERFAMILY SSF57783 716 756 2.21E-6 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 25 648 4.5E-243 T 11-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SMART SM00493 23 153 8.8E-30 T 11-10-2018 IPR006171 TOPRIM domain AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF01751 Toprim domain 25 163 1.0E-32 T 11-10-2018 IPR006171 TOPRIM domain AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 614 639 2.0E-4 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 728 759 5.2E-5 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 127 140 2.5E-36 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 410 426 2.5E-36 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 212 230 2.5E-36 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 509 523 2.5E-36 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 334 343 2.5E-36 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SUPERFAMILY SSF57783 824 878 6.63E-18 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:3.40.50.140 21 184 3.2E-66 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Hamap MF_00952 DNA topoisomerase 1 [topA]. 23 749 54.235 T 11-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SUPERFAMILY SSF57783 599 639 1.02E-9 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SMART SM00437 292 546 3.6E-120 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:2.20.25.10 823 879 1.1E-22 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 329 343 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SUPERFAMILY SSF56712 24 626 1.03E-197 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:2.70.20.10 234 492 1.4E-154 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:3.30.65.10 598 655 1.0E-6 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:3.30.65.10 714 759 2.5E-6 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:3.30.65.10 760 822 1.1E-20 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SMART SM00436 154 242 2.2E-48 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 SUPERFAMILY SSF57783 759 821 2.55E-14 T 11-10-2018 AMD27_02165 614265d3b997492ead4a30af9042b3d8 879 Gene3D G3DSA:1.10.460.10 186 590 1.4E-154 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMD27_16370 c3c73ae7dc3094c7a51814d1b6a0c81f 259 SUPERFAMILY SSF101386 11 97 2.91E-6 T 11-10-2018 AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 8.8E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 254 2.2E-54 T 11-10-2018 AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 SUPERFAMILY SSF51735 14 255 1.71E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02930 0f4547596fb28074ad8e2153261a2183 293 Gene3D G3DSA:3.40.50.720 2 288 1.2E-78 T 11-10-2018 AMD27_07335 4de0f396b48f602dc305bb2796b8262f 451 Gene3D G3DSA:1.20.1250.20 21 430 5.5E-73 T 11-10-2018 AMD27_07335 4de0f396b48f602dc305bb2796b8262f 451 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_07335 4de0f396b48f602dc305bb2796b8262f 451 SUPERFAMILY SSF103473 11 432 2.88E-81 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_07335 4de0f396b48f602dc305bb2796b8262f 451 Pfam PF07690 Major Facilitator Superfamily 29 358 6.4E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 SUPERFAMILY SSF51412 3 478 2.35E-124 T 11-10-2018 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 SUPERFAMILY SSF54631 93 202 2.27E-26 T 11-10-2018 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 PIRSF PIRSF000130 1 488 9.1E-201 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 474 2.6E-158 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 Gene3D G3DSA:3.20.20.70 2 487 1.2E-205 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 SMART SM00116 157 205 3.7E-7 T 11-10-2018 IPR000644 CBS domain AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 SMART SM00116 96 143 1.0E-8 T 11-10-2018 IPR000644 CBS domain AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 487 82.259 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 SMART SM01240 7 474 0.0 T 11-10-2018 AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 Pfam PF00571 CBS domain 89 137 6.9E-11 T 11-10-2018 IPR000644 CBS domain AMD27_15265 08822eec772bda3195b7b69f1cbefefe 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 1.5E-185 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 Gene3D G3DSA:3.30.540.10 1 144 3.5E-43 T 11-10-2018 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 SUPERFAMILY SSF56655 1 272 6.81E-74 T 11-10-2018 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 Gene3D G3DSA:3.40.190.80 145 272 4.6E-31 T 11-10-2018 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 221 235 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 Pfam PF00459 Inositol monophosphatase family 2 265 7.1E-63 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 218 242 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 187 208 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_14205 7fa84e4a3dc62ad9e3ab1707b7618fbb 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 8.1E-47 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 1.5E-32 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 SUPERFAMILY SSF47203 229 379 1.39E-41 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Gene3D G3DSA:2.40.110.10 121 232 2.8E-42 T 11-10-2018 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 3.1E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Gene3D G3DSA:1.20.140.10 233 379 2.2E-38 T 11-10-2018 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 SUPERFAMILY SSF56645 3 241 5.89E-79 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 4.8E-40 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 Gene3D G3DSA:1.10.540.10 1 120 2.2E-40 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_02940 3752f6853808e037ecfadd19fac33e4d 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.8E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.8E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.8E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 SMART SM00422 1 70 1.7E-21 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 SUPERFAMILY SSF46955 1 114 9.52E-33 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 Gene3D G3DSA:1.10.1660.10 1 120 8.6E-34 T 11-10-2018 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_00070 5313ad2f4ae07f2d44d13dc1c0d4058b 120 Pfam PF13411 MerR HTH family regulatory protein 2 66 4.4E-20 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_16810 bf106224330c1401572ca2ffb65690d0 400 SUPERFAMILY SSF46785 172 261 1.9E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_16810 bf106224330c1401572ca2ffb65690d0 400 Gene3D G3DSA:1.10.10.10 184 277 2.8E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_16810 bf106224330c1401572ca2ffb65690d0 400 Gene3D G3DSA:1.10.10.10 11 183 2.5E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_16810 bf106224330c1401572ca2ffb65690d0 400 Pfam PF01051 Initiator Replication protein 23 266 1.0E-22 T 11-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Gene3D G3DSA:3.40.50.620 37 581 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Gene3D G3DSA:3.10.330.110 582 644 0.0 T 11-10-2018 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 SUPERFAMILY SSF50677 231 427 2.09E-49 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Gene3D G3DSA:3.10.20.590 814 873 3.2E-19 T 11-10-2018 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Gene3D G3DSA:1.10.730.10 13 805 0.0 T 11-10-2018 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Pfam PF09334 tRNA synthetases class I (M) 40 176 2.9E-19 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 131 148 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 500 518 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 157 173 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 189 202 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 539 561 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 572 582 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 220 239 8.2E-49 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 SUPERFAMILY SSF47323 678 873 1.27E-25 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 SUPERFAMILY SSF52374 13 684 2.01E-144 T 11-10-2018 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 226 416 5.7E-71 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 431 587 2.4E-6 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 634 674 4.1E-7 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Pfam PF08264 Anticodon-binding domain of tRNA 717 833 2.1E-11 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 11 873 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 8 873 22.757 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMD27_13535 0c2c2eb9e78203bf26a10324b15811ca 873 Gene3D G3DSA:3.90.740.10 232 427 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 Hamap MF_00186 Glycerol kinase [glpK]. 1 492 51.802 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 133 145 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 SUPERFAMILY SSF53067 252 490 9.28E-79 T 11-10-2018 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 447 1.5E-63 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 Gene3D G3DSA:3.30.420.40 1 250 5.1E-103 T 11-10-2018 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 PIRSF PIRSF000538 1 492 6.2E-169 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 491 4.4E-213 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 249 2.1E-77 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 Gene3D G3DSA:3.30.420.40 251 492 3.5E-85 T 11-10-2018 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 SUPERFAMILY SSF53067 3 252 2.79E-90 T 11-10-2018 AMD27_03755 afbc7e7367fb272c64717dbdb6316b02 492 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF03895 YadA-like membrane anchor domain 2968 3024 3.7E-8 T 11-10-2018 IPR005594 YadA-like, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 1929 2024 5.49E-6 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 1591 1686 9.94E-6 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 2364 2556 5.6E-10 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 343 509 1.1E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1183 1350 4.8E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 680 847 1.1E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 2196 2363 9.2E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1015 1182 9.5E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 175 342 4.5E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 848 1014 3.3E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 2027 2195 3.8E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 2727 2794 1.1E-7 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 4 174 9.0E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1689 1857 2.8E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1351 1519 1.1E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 510 679 3.6E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1858 2026 5.9E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:2.150.10.10 1520 1688 3.7E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 2635 2730 8.5E-5 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 1760 1855 5.89E-6 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:1.20.5.170 2849 2952 1.7E-17 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:1.20.5.170 2557 2628 5.2E-9 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 2098 2193 9.29E-6 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:3.30.390.90 2673 2712 2.7E-14 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 2267 2362 8.89E-6 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF54523 2865 3024 9.42E-16 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2768 2809 3.2E-7 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2171 2211 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2852 2892 5.4E-7 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 486 526 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1664 1704 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1833 1873 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 655 695 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 150 190 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2536 2576 0.0047 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 991 1031 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1495 1535 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1327 1367 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 318 358 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2340 2380 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2707 2745 0.0028 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 823 863 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1159 1199 4.9E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2002 2042 5.5E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 SUPERFAMILY SSF101967 582 677 1.57E-5 T 11-10-2018 AMD27_00170 f023f5dafed9eeac156f5206c95f2058 3028 Gene3D G3DSA:3.30.1300.30 2953 3025 6.5E-9 T 11-10-2018 AMD27_13420 6e8abb280fde7a2e95b9c1ee9a67e188 86 Pfam PF00550 Phosphopantetheine attachment site 7 80 6.8E-9 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMD27_13420 6e8abb280fde7a2e95b9c1ee9a67e188 86 SUPERFAMILY SSF47336 2 83 1.44E-12 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_13420 6e8abb280fde7a2e95b9c1ee9a67e188 86 Gene3D G3DSA:1.10.1200.10 3 85 4.7E-19 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_05495 b6a0a53e38859e98ee191374531b31eb 206 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 4 184 9.4E-45 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_05495 b6a0a53e38859e98ee191374531b31eb 206 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 1 203 20.726 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_05495 b6a0a53e38859e98ee191374531b31eb 206 Gene3D G3DSA:3.20.20.70 2 197 5.4E-46 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05495 b6a0a53e38859e98ee191374531b31eb 206 Pfam PF02581 Thiamine monophosphate synthase 4 183 9.9E-50 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_05495 b6a0a53e38859e98ee191374531b31eb 206 SUPERFAMILY SSF51391 3 185 3.4E-48 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_15995 c74b67dfe8baacad6709d06996d02442 267 Pfam PF09850 Type VI secretion system protein DotU 34 236 7.0E-50 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU AMD27_15995 c74b67dfe8baacad6709d06996d02442 267 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 33 241 5.4E-57 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU AMD27_15995 c74b67dfe8baacad6709d06996d02442 267 Gene3D G3DSA:1.25.40.590 27 197 6.6E-38 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 Pfam PF00330 Aconitase family (aconitate hydratase) 28 484 1.2E-158 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 Gene3D G3DSA:3.30.499.20 25 312 1.9E-95 T 11-10-2018 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 22 492 58.765 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 ProSitePatterns PS01244 Aconitase family signature 2. 426 439 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 426 439 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 108 121 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 134 142 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 235 248 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 369 380 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 145 158 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 159 174 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 312 326 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 PRINTS PR00415 Aconitase family signature 221 234 3.1E-45 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 SUPERFAMILY SSF53732 19 491 2.09E-162 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 23 492 1.1E-233 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 Gene3D G3DSA:3.30.499.10 355 492 1.1E-48 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMD27_02000 38f184e21ccd20ac3be240f437285d47 492 ProSitePatterns PS00450 Aconitase family signature 1. 365 381 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 Gene3D G3DSA:1.10.287.130 329 394 5.5E-13 T 11-10-2018 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SMART SM00388 330 394 6.8E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SUPERFAMILY SSF55874 384 548 1.96E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SMART SM00304 277 329 9.6E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 Pfam PF00512 His Kinase A (phospho-acceptor) domain 330 393 2.9E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 439 548 1.5E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SUPERFAMILY SSF47384 314 395 3.34E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SMART SM00387 438 550 7.7E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 Gene3D G3DSA:1.20.1480.50 247 328 1.5E-10 T 11-10-2018 AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 Gene3D G3DSA:3.30.565.10 404 551 4.9E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12905 8a1b5326bac13a5b7bd3ee5640cd327e 552 SUPERFAMILY SSF158472 279 321 1.44E-7 T 11-10-2018 AMD27_09430 857f0b798744c00986fd99fc027a6858 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 2.7E-85 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_09430 857f0b798744c00986fd99fc027a6858 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_09430 857f0b798744c00986fd99fc027a6858 257 Gene3D G3DSA:1.10.12.10 200 256 3.9E-26 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_09430 857f0b798744c00986fd99fc027a6858 257 Gene3D G3DSA:3.90.226.10 2 199 1.7E-75 T 11-10-2018 AMD27_09430 857f0b798744c00986fd99fc027a6858 257 SUPERFAMILY SSF52096 1 256 1.84E-90 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_07945 78708da75cf636302ec2c629e7acd128 234 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 3 220 9.1E-117 T 11-10-2018 IPR014063 Arsenate resistance ArsH AMD27_07945 78708da75cf636302ec2c629e7acd128 234 Pfam PF03358 NADPH-dependent FMN reductase 28 170 2.2E-27 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMD27_07945 78708da75cf636302ec2c629e7acd128 234 SUPERFAMILY SSF52218 16 220 6.98E-63 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_07945 78708da75cf636302ec2c629e7acd128 234 Gene3D G3DSA:3.40.50.360 1 234 4.9E-76 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 173 4.7E-36 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 Pfam PF00425 chorismate binding enzyme 221 480 4.5E-91 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 SUPERFAMILY SSF56322 15 490 5.76E-151 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 488 3.1E-162 T 11-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 Gene3D G3DSA:3.60.120.10 1 494 2.0E-175 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 PRINTS PR00095 Anthranilate synthase component I signature 422 436 2.8E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 PRINTS PR00095 Anthranilate synthase component I signature 328 341 2.8E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 PRINTS PR00095 Anthranilate synthase component I signature 437 451 2.8E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_01175 a09bd890edb6ce0b3aefd431d8f8d40a 497 PRINTS PR00095 Anthranilate synthase component I signature 342 355 2.8E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_14440 b63bf227098144fbdb6bc58835038690 740 SMART SM00487 204 401 1.7E-20 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_14440 b63bf227098144fbdb6bc58835038690 740 Hamap MF_00983 Probable primosomal protein N' [priA]. 16 739 24.067 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMD27_14440 b63bf227098144fbdb6bc58835038690 740 SUPERFAMILY SSF52540 205 384 1.89E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14440 b63bf227098144fbdb6bc58835038690 740 Gene3D G3DSA:1.10.8.630 13 125 1.2E-31 T 11-10-2018 AMD27_14440 b63bf227098144fbdb6bc58835038690 740 Gene3D G3DSA:3.40.50.300 197 388 2.8E-73 T 11-10-2018 AMD27_14440 b63bf227098144fbdb6bc58835038690 740 TIGRFAM TIGR00595 priA: primosomal protein N' 230 736 1.1E-185 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMD27_14440 b63bf227098144fbdb6bc58835038690 740 SMART SM00490 502 599 2.8E-5 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_14440 b63bf227098144fbdb6bc58835038690 740 Pfam PF00271 Helicase conserved C-terminal domain 530 598 1.3E-4 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_14440 b63bf227098144fbdb6bc58835038690 740 SUPERFAMILY SSF52540 470 624 4.47E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14440 b63bf227098144fbdb6bc58835038690 740 Pfam PF04851 Type III restriction enzyme, res subunit 209 369 5.0E-15 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 398 1.9E-81 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 Gene3D G3DSA:3.20.140.10 1 402 1.4E-149 T 11-10-2018 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 SUPERFAMILY SSF54675 2 139 9.42E-42 T 11-10-2018 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 399 47.179 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 SUPERFAMILY SSF51690 121 397 1.92E-89 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 398 1.3E-169 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMD27_15565 08a961d69a42d20e35eb7938cbf8ab11 402 PIRSF PIRSF000484 1 391 7.7E-80 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 7.7E-36 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 7.7E-36 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 7.7E-36 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 7.7E-36 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 1.1E-25 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_01470 c60d741996e1420cf04f31ba732da356 109 Pfam PF03840 Preprotein translocase SecG subunit 4 73 3.2E-21 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMD27_14590 96c611d5b8a36a0ffbb5e3ad1e8d7eb0 295 PIRSF PIRSF007580 6 283 6.1E-66 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_14590 96c611d5b8a36a0ffbb5e3ad1e8d7eb0 295 Pfam PF10118 Predicted metal-dependent hydrolase 23 265 1.5E-71 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_06000 7387f1c246db928083f63a0b0346727a 259 Pfam PF13566 Domain of unknown function (DUF4130 85 256 4.6E-48 T 11-10-2018 IPR025404 Domain of unknown function DUF4130 AMD27_06000 7387f1c246db928083f63a0b0346727a 259 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 4 257 3.7E-78 T 11-10-2018 IPR023875 DNA metabolism protein, putative AMD27_10355 4b30a23eb614247e856deba2fc307624 190 Gene3D G3DSA:2.30.110.10 17 187 7.1E-46 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMD27_10355 4b30a23eb614247e856deba2fc307624 190 Hamap MF_00833 FMN reductase (NADH) RutF [rutF]. 28 190 40.224 T 11-10-2018 IPR019917 FMN reductase (NADH) RutF GO:0008752|GO:0055114 KEGG: 00740+1.5.1.42|MetaCyc: PWY-7723 AMD27_10355 4b30a23eb614247e856deba2fc307624 190 SUPERFAMILY SSF50475 30 184 2.16E-44 T 11-10-2018 AMD27_10355 4b30a23eb614247e856deba2fc307624 190 SMART SM00903 40 185 7.0E-51 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMD27_10355 4b30a23eb614247e856deba2fc307624 190 TIGRFAM TIGR03615 RutF: pyrimidine utilization flavin reductase protein F 32 185 2.7E-83 T 11-10-2018 IPR019917 FMN reductase (NADH) RutF GO:0008752|GO:0055114 KEGG: 00740+1.5.1.42|MetaCyc: PWY-7723 AMD27_10355 4b30a23eb614247e856deba2fc307624 190 Pfam PF01613 Flavin reductase like domain 40 185 3.9E-33 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMD27_11790 860b0eeb367951192ed41e13cfb8b488 157 Pfam PF01957 NfeD-like C-terminal, partner-binding 9 150 3.5E-13 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain AMD27_11790 860b0eeb367951192ed41e13cfb8b488 157 SUPERFAMILY SSF141322 85 149 5.62E-6 T 11-10-2018 AMD27_11790 860b0eeb367951192ed41e13cfb8b488 157 Gene3D G3DSA:2.40.50.140 77 154 7.6E-9 T 11-10-2018 AMD27_10655 2cd547395366257534ecbac19f56b213 136 Pfam PF11304 Protein of unknown function (DUF3106) 37 89 6.7E-6 T 11-10-2018 IPR021455 Protein of unknown function DUF3106 AMD27_03410 b873b3fe1e73b611d70336089c575f5b 272 Gene3D G3DSA:3.40.50.150 71 271 5.7E-59 T 11-10-2018 AMD27_03410 b873b3fe1e73b611d70336089c575f5b 272 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 4 268 26.834 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AMD27_03410 b873b3fe1e73b611d70336089c575f5b 272 Pfam PF04445 Putative SAM-dependent methyltransferase 77 266 1.0E-48 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AMD27_03410 b873b3fe1e73b611d70336089c575f5b 272 SUPERFAMILY SSF53335 32 268 3.14E-51 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 Gene3D G3DSA:1.20.81.30 55 170 4.0E-29 T 11-10-2018 AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 401 4.7E-143 T 11-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 1.8E-30 T 11-10-2018 IPR003004 GspF/PilC family AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 1.8E-30 T 11-10-2018 IPR003004 GspF/PilC family AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 1.8E-30 T 11-10-2018 IPR003004 GspF/PilC family AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 1.8E-30 T 11-10-2018 IPR003004 GspF/PilC family AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 Gene3D G3DSA:1.20.81.30 254 364 2.8E-26 T 11-10-2018 AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 Pfam PF00482 Type II secretion system (T2SS), protein F 271 393 4.6E-28 T 11-10-2018 IPR018076 Type II secretion system F domain AMD27_14435 4784c071c416a6b83b9d69dfc2a1ebc2 401 Pfam PF00482 Type II secretion system (T2SS), protein F 70 191 4.4E-31 T 11-10-2018 IPR018076 Type II secretion system F domain AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Pfam PF05190 MutS family domain IV 441 531 2.9E-30 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SUPERFAMILY SSF55271 9 120 1.83E-37 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Gene3D G3DSA:1.10.1420.10 277 572 4.1E-94 T 11-10-2018 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 13 867 23.785 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 701 717 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 13 872 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SMART SM00533 293 604 1.6E-86 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Gene3D G3DSA:3.30.420.110 134 273 2.0E-37 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Pfam PF01624 MutS domain I 14 124 2.1E-38 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Pfam PF05188 MutS domain II 141 264 2.4E-21 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SUPERFAMILY SSF48334 278 578 4.45E-81 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Pfam PF00488 MutS domain V 624 808 1.7E-80 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Gene3D G3DSA:1.10.1420.10 400 516 4.1E-94 T 11-10-2018 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SUPERFAMILY SSF53150 119 277 1.19E-37 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 PIRSF PIRSF037677 6 845 1.5E-146 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Pfam PF05192 MutS domain III 281 572 4.0E-32 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Gene3D G3DSA:3.40.1170.10 5 126 4.2E-46 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 Gene3D G3DSA:3.40.50.300 582 878 1.9E-95 T 11-10-2018 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SMART SM00534 620 806 5.6E-108 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMD27_06230 740ea8a453b22e4a73e8e6ea49dd115c 878 SUPERFAMILY SSF52540 580 810 2.17E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 Pfam PF00311 Phosphoenolpyruvate carboxylase 134 896 8.7E-279 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 721 747 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 250 265 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 589 618 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 391 411 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 547 567 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 138 151 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 191 207 8.2E-68 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 139 150 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 Gene3D G3DSA:1.20.1440.90 278 394 2.5E-30 T 11-10-2018 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 2 896 18.421 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 SUPERFAMILY SSF51621 10 896 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_00225 2768950e54d2a58f89d5dc8bb329c153 896 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 549 561 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 SUPERFAMILY SSF74653 66 270 6.8E-12 T 11-10-2018 AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 206 267 1.0E-12 T 11-10-2018 IPR006260 TonB/TolA, C-terminal AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 208 266 8.2E-11 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 PRINTS PR01374 Gram-negative bacterial tonB protein signature 208 226 5.4E-5 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 PRINTS PR01374 Gram-negative bacterial tonB protein signature 75 85 5.4E-5 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AMD27_02230 52a9f015ca3aa974312d1e670cf9f35a 273 Gene3D G3DSA:3.30.1150.10 170 269 1.6E-11 T 11-10-2018 AMD27_04935 960e0cf9a6ddb597c07275e59b23b801 612 PIRSF PIRSF002741 24 603 1.5E-87 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMD27_04935 960e0cf9a6ddb597c07275e59b23b801 612 Gene3D G3DSA:3.40.190.10 34 598 4.9E-207 T 11-10-2018 AMD27_04935 960e0cf9a6ddb597c07275e59b23b801 612 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 103 515 1.4E-67 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain AMD27_04935 960e0cf9a6ddb597c07275e59b23b801 612 Gene3D G3DSA:3.10.105.10 317 578 4.9E-207 T 11-10-2018 AMD27_04935 960e0cf9a6ddb597c07275e59b23b801 612 SUPERFAMILY SSF53850 55 601 6.52E-100 T 11-10-2018 AMD27_01555 765e9e62ca22319ecdc094a4bf7ba3bf 546 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 372 538 1.8E-14 T 11-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal AMD27_01555 765e9e62ca22319ecdc094a4bf7ba3bf 546 Pfam PF15864 Protein glycosylation ligase 158 181 3.2E-7 T 11-10-2018 IPR031726 Protein glycosylation ligase domain AMD27_01555 765e9e62ca22319ecdc094a4bf7ba3bf 546 Pfam PF04932 O-Antigen ligase 197 343 2.1E-12 T 11-10-2018 IPR007016 O-antigen ligase-related AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 Gene3D G3DSA:3.40.30.10 100 243 5.5E-34 T 11-10-2018 AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 Pfam PF13098 Thioredoxin-like domain 108 229 6.5E-25 T 11-10-2018 IPR012336 Thioredoxin-like fold AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 SUPERFAMILY SSF52833 92 235 1.01E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 79 4.2E-17 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 SUPERFAMILY SSF54423 32 82 1.96E-10 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_16645 bcb51c011f3191fd7952332224ec2ef4 243 Gene3D G3DSA:3.10.450.70 21 83 1.9E-7 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_02945 97debc43aef698cc734a950f19620953 278 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 277 1.3E-48 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_02945 97debc43aef698cc734a950f19620953 278 SUPERFAMILY SSF52096 10 277 1.31E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02945 97debc43aef698cc734a950f19620953 278 Gene3D G3DSA:3.90.226.10 14 219 7.1E-61 T 11-10-2018 AMD27_02945 97debc43aef698cc734a950f19620953 278 Gene3D G3DSA:1.10.12.10 220 278 9.7E-23 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_13685 8531099ec990e6be79fd75ccde5dc440 141 Gene3D G3DSA:3.10.129.10 1 138 3.4E-37 T 11-10-2018 AMD27_13685 8531099ec990e6be79fd75ccde5dc440 141 Pfam PF03061 Thioesterase superfamily 27 99 7.0E-18 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_13685 8531099ec990e6be79fd75ccde5dc440 141 SUPERFAMILY SSF54637 8 131 4.85E-34 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Gene3D G3DSA:3.40.50.300 208 309 2.4E-17 T 11-10-2018 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Pfam PF13361 UvrD-like helicase C-terminal domain 761 834 4.0E-16 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Gene3D G3DSA:3.40.50.300 452 660 4.2E-28 T 11-10-2018 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 SUPERFAMILY SSF52540 205 845 1.25E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 874 910 6.4E-11 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Gene3D G3DSA:3.40.50.300 665 854 4.3E-30 T 11-10-2018 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Pfam PF00580 UvrD/REP helicase N-terminal domain 208 655 1.0E-41 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 SUPERFAMILY SSF57783 870 910 1.87E-7 T 11-10-2018 AMD27_06330 fb62c08cc432f1937815933d5766ac7f 912 Gene3D G3DSA:1.10.10.160 310 388 2.4E-17 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 1.6E-20 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 423 442 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 2.0E-50 T 11-10-2018 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 Pfam PF00361 Proton-conducting membrane transporter 134 409 2.9E-84 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 8.3E-8 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 8.3E-8 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 8.3E-8 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 422 444 8.3E-8 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_12325 e166c3b2249f1e04222c17137f5f8c30 629 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 621 7.8E-200 T 11-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_01705 a91992ce6b58179c48bf718a87fe7f7a 346 SUPERFAMILY SSF158855 63 337 1.57E-82 T 11-10-2018 AMD27_01705 a91992ce6b58179c48bf718a87fe7f7a 346 Hamap MF_00790 Lipase chaperone [lifO]. 5 334 19.603 T 11-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 AMD27_01705 a91992ce6b58179c48bf718a87fe7f7a 346 Pfam PF03280 Proteobacterial lipase chaperone protein 135 325 4.0E-51 T 11-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 415 518 5.6E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SMART SM00388 313 376 4.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SUPERFAMILY SSF47384 307 373 6.47E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 Gene3D G3DSA:1.10.287.130 299 375 1.4E-13 T 11-10-2018 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SUPERFAMILY SSF55874 383 519 1.83E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 Gene3D G3DSA:3.30.565.10 379 521 2.1E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 2.1E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 2.1E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 2.1E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 2.1E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SMART SM00091 198 265 0.0022 T 11-10-2018 IPR000014 PAS domain AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 Gene3D G3DSA:3.30.450.20 180 282 6.6E-6 T 11-10-2018 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 Pfam PF00512 His Kinase A (phospho-acceptor) domain 313 374 5.3E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SUPERFAMILY SSF55785 191 256 2.09E-6 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_00990 df255e6a14962b1b01f6940c64a1ce81 521 SMART SM00387 414 521 9.0E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_03630 7c068db598a467abad35042d5e1ecc28 282 Pfam PF13230 Glutamine amidotransferases class-II 1 265 4.8E-120 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 AMD27_03630 7c068db598a467abad35042d5e1ecc28 282 Gene3D G3DSA:3.60.20.10 1 259 3.3E-93 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_03630 7c068db598a467abad35042d5e1ecc28 282 SUPERFAMILY SSF56235 2 252 1.09E-45 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 TIGRFAM TIGR01138 cysM: cysteine synthase B 16 300 5.1E-137 T 11-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 41 59 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 SUPERFAMILY SSF53686 17 300 1.44E-87 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 Gene3D G3DSA:3.40.50.1100 46 161 1.1E-103 T 11-10-2018 AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 TIGRFAM TIGR01136 cysKM: cysteine synthase 17 300 3.3E-116 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 Gene3D G3DSA:3.40.50.1100 19 296 1.1E-103 T 11-10-2018 AMD27_02615 7d996de379625ad5d61c2c0817f9f172 306 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 289 3.9E-66 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 Pfam PF02321 Outer membrane efflux protein 279 458 1.8E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 Pfam PF02321 Outer membrane efflux protein 67 249 6.5E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 Gene3D G3DSA:2.20.200.10 102 349 5.2E-128 T 11-10-2018 AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 Gene3D G3DSA:1.20.1600.10 56 460 5.2E-128 T 11-10-2018 AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 460 8.4E-103 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMD27_04280 6bf57044c0c6af0084a45adca37a3334 483 SUPERFAMILY SSF56954 10 461 1.44E-102 T 11-10-2018 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 13 393 53.174 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 12 392 5.1E-175 T 11-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 SUPERFAMILY SSF53383 26 393 8.07E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 Gene3D G3DSA:3.40.640.10 6 258 4.6E-88 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 392 8.2E-139 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 PIRSF PIRSF001434 1 395 1.2E-130 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_07420 d6864359bfb0ce442006fe6638d5dfbf 395 Gene3D G3DSA:3.90.1150.10 261 395 4.7E-50 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Gene3D G3DSA:2.40.50.230 433 540 6.3E-31 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Gene3D G3DSA:2.30.110.50 29 376 1.4E-44 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 27 589 1.7E-66 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 SUPERFAMILY SSF69255 441 535 1.18E-24 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Gene3D G3DSA:3.55.50.10 111 221 1.4E-44 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 SUPERFAMILY SSF69279 25 197 7.94E-36 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Pfam PF05954 Phage late control gene D protein (GPD) 43 384 4.3E-56 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 591 1.1E-56 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Gene3D G3DSA:3.30.1920.30 254 336 1.4E-44 T 11-10-2018 AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 697 844 2.4E-42 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_05065 d01d859c4d22459a5ad7e17407a5c51e 946 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 564 671 1.5E-35 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 PIRSF PIRSF004808 11 267 8.2E-64 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 SUPERFAMILY SSF75217 13 173 2.75E-35 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 14 263 2.4E-64 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 Pfam PF00588 SpoU rRNA Methylase family 16 167 3.5E-33 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 Gene3D G3DSA:1.10.8.590 191 277 4.4E-20 T 11-10-2018 AMD27_06440 d13c8445bde3e3ac6f5d547ef9d66a51 280 Gene3D G3DSA:3.40.1280.10 12 178 5.5E-60 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_02070 71e3e0575e13466951f652a1ce64485a 311 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 302 1.4E-63 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_02070 71e3e0575e13466951f652a1ce64485a 311 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 9 311 40.754 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 AMD27_02070 71e3e0575e13466951f652a1ce64485a 311 PIRSF PIRSF026649 8 311 4.3E-82 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_14465 c429e49661903eb6678de0e10df5057a 88 Gene3D G3DSA:1.20.58.660 13 87 7.0E-21 T 11-10-2018 AMD27_14465 c429e49661903eb6678de0e10df5057a 88 Pfam PF04325 Protein of unknown function (DUF465) 31 78 1.9E-10 T 11-10-2018 IPR007420 Protein of unknown function DUF465 AMD27_09655 ea3b936c514782129d37429ba5e32414 336 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 6 336 34.018 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMD27_09655 ea3b936c514782129d37429ba5e32414 336 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 328 1.5E-98 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMD27_09655 ea3b936c514782129d37429ba5e32414 336 SUPERFAMILY SSF52540 51 181 4.43E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09655 ea3b936c514782129d37429ba5e32414 336 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 24 325 1.7E-68 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 SUPERFAMILY SSF53901 272 390 1.07E-35 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 390 4.2E-123 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 Gene3D G3DSA:3.40.47.10 127 389 1.2E-134 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 SUPERFAMILY SSF53901 4 269 8.02E-76 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 Gene3D G3DSA:3.40.47.10 6 275 1.2E-134 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 Pfam PF00108 Thiolase, N-terminal domain 5 261 1.5E-83 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 PIRSF PIRSF000429 1 392 8.3E-108 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_10810 5c9619130a2df6f7ee35c65ffc57d258 393 Pfam PF02803 Thiolase, C-terminal domain 271 390 4.8E-41 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_11130 5c0002401e823f85ca849317454a33f1 307 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 19 87 8.4E-12 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMD27_11130 5c0002401e823f85ca849317454a33f1 307 SUPERFAMILY SSF56349 8 296 1.59E-49 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_11130 5c0002401e823f85ca849317454a33f1 307 Gene3D G3DSA:1.10.443.10 113 296 1.1E-54 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_11130 5c0002401e823f85ca849317454a33f1 307 Pfam PF00589 Phage integrase family 117 288 3.3E-39 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_11130 5c0002401e823f85ca849317454a33f1 307 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 302 48.65 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMD27_11130 5c0002401e823f85ca849317454a33f1 307 Gene3D G3DSA:1.10.150.130 2 108 9.4E-19 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_02775 1edce219179769841fee115535dc9ae1 326 SUPERFAMILY SSF55681 91 325 3.06E-80 T 11-10-2018 AMD27_02775 1edce219179769841fee115535dc9ae1 326 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 86 4.9E-21 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMD27_02775 1edce219179769841fee115535dc9ae1 326 SUPERFAMILY SSF46589 11 98 3.66E-20 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMD27_02775 1edce219179769841fee115535dc9ae1 326 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 7 325 47.609 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMD27_02775 1edce219179769841fee115535dc9ae1 326 Gene3D G3DSA:3.30.930.10 7 326 5.8E-120 T 11-10-2018 AMD27_02775 1edce219179769841fee115535dc9ae1 326 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 325 1.3E-107 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMD27_02775 1edce219179769841fee115535dc9ae1 326 Pfam PF01409 tRNA synthetases class II core domain (F) 91 325 5.3E-103 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMD27_02835 931698e0da4dbf88af4ca46669c7ac56 916 Pfam PF10101 Predicted membrane protein (DUF2339) 171 904 7.1E-81 T 11-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 PIRSF PIRSF000292 1 351 3.0E-124 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 143 220 3.3E-6 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 Gene3D G3DSA:1.10.287.90 26 110 2.5E-30 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 SUPERFAMILY SSF81464 14 115 1.8E-22 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 SUPERFAMILY SSF49503 117 253 8.92E-41 T 11-10-2018 IPR008972 Cupredoxin AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 Gene3D G3DSA:2.60.40.420 111 271 2.1E-44 T 11-10-2018 IPR008972 Cupredoxin AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 11 236 2.8E-96 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMD27_06640 9a55baec60f6f04d7ab757908db35aac 357 Pfam PF06481 COX Aromatic Rich Motif 297 323 5.7E-10 T 11-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AMD27_06535 6c584c93401031005c9f655178186aea 485 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 132 242 7.9E-22 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 297 454 2.0E-47 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 SUPERFAMILY SSF51735 132 308 8.4E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_06535 6c584c93401031005c9f655178186aea 485 Gene3D G3DSA:3.40.50.720 133 467 2.7E-115 T 11-10-2018 AMD27_06535 6c584c93401031005c9f655178186aea 485 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 133 466 2.0E-112 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 SUPERFAMILY SSF55347 292 455 6.55E-55 T 11-10-2018 AMD27_06535 6c584c93401031005c9f655178186aea 485 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 290 297 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 Gene3D G3DSA:3.30.360.10 291 456 2.7E-115 T 11-10-2018 AMD27_06535 6c584c93401031005c9f655178186aea 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 250 263 8.8E-20 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 313 329 8.8E-20 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 286 304 8.8E-20 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 369 386 8.8E-20 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 410 425 8.8E-20 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_06535 6c584c93401031005c9f655178186aea 485 SMART SM00846 131 292 2.1E-54 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 Pfam PF02542 YgbB family 5 158 6.4E-64 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 Gene3D G3DSA:3.30.1330.50 3 161 1.0E-64 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 SUPERFAMILY SSF69765 4 159 1.14E-62 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 1.6E-64 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_07265 f223f11eee1cc7d4b134b6028025368c 161 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 34.584 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 378 7.1E-38 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 SUPERFAMILY SSF56645 4 241 1.44E-82 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Gene3D G3DSA:1.20.140.10 235 380 2.8E-40 T 11-10-2018 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 SUPERFAMILY SSF47203 227 379 4.35E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Gene3D G3DSA:1.10.540.10 2 120 2.4E-34 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 PIRSF PIRSF016578 9 379 2.3E-13 T 11-10-2018 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 4.2E-23 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Gene3D G3DSA:2.40.110.10 121 234 1.1E-40 T 11-10-2018 AMD27_05265 4867db99f5bcc280ae6ea6bf7ae28d8b 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 1.8E-32 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_05085 b68c8fa0816e946871265252a3dc7d5e 267 Gene3D G3DSA:3.40.50.1820 1 267 5.4E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05085 b68c8fa0816e946871265252a3dc7d5e 267 Pfam PF12697 Alpha/beta hydrolase family 7 255 2.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_05085 b68c8fa0816e946871265252a3dc7d5e 267 SUPERFAMILY SSF53474 2 260 1.02E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05370 2b5b152602d10da11ce4de6f08c0409f 181 Gene3D G3DSA:2.70.70.10 34 181 3.6E-46 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_05370 2b5b152602d10da11ce4de6f08c0409f 181 Pfam PF01551 Peptidase family M23 76 170 2.0E-22 T 11-10-2018 IPR016047 Peptidase M23 AMD27_05370 2b5b152602d10da11ce4de6f08c0409f 181 SUPERFAMILY SSF51261 53 179 1.15E-30 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_03915 873b7f580dc6c021f0d78578ccc8e5d5 202 SUPERFAMILY SSF55729 18 184 1.2E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_03915 873b7f580dc6c021f0d78578ccc8e5d5 202 Pfam PF13523 Acetyltransferase (GNAT) domain 29 171 1.7E-37 T 11-10-2018 AMD27_03915 873b7f580dc6c021f0d78578ccc8e5d5 202 Gene3D G3DSA:3.40.630.30 6 186 1.8E-40 T 11-10-2018 AMD27_03915 873b7f580dc6c021f0d78578ccc8e5d5 202 SMART SM01006 24 71 1.5E-11 T 11-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain AMD27_12465 b382dfef586ec5bab2ebc50fb67e01e1 157 Pfam PF04972 BON domain 46 99 8.3E-8 T 11-10-2018 IPR007055 BON domain AMD27_12465 b382dfef586ec5bab2ebc50fb67e01e1 157 Gene3D G3DSA:3.10.350.10 107 155 2.1E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_12465 b382dfef586ec5bab2ebc50fb67e01e1 157 SUPERFAMILY SSF54106 106 156 3.14E-7 T 11-10-2018 AMD27_12465 b382dfef586ec5bab2ebc50fb67e01e1 157 SMART SM00257 107 156 4.0E-12 T 11-10-2018 IPR018392 LysM domain AMD27_12465 b382dfef586ec5bab2ebc50fb67e01e1 157 Pfam PF01476 LysM domain 108 156 2.3E-10 T 11-10-2018 IPR018392 LysM domain AMD27_14765 1d3513f2389fcef12db239a165a61512 141 Pfam PF00583 Acetyltransferase (GNAT) family 24 124 1.9E-15 T 11-10-2018 IPR000182 GNAT domain AMD27_14765 1d3513f2389fcef12db239a165a61512 141 Gene3D G3DSA:3.40.630.30 3 141 6.2E-36 T 11-10-2018 AMD27_14765 1d3513f2389fcef12db239a165a61512 141 SUPERFAMILY SSF55729 1 130 2.33E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_03325 a8130ebfc7019990f6b391fefd588c71 83 Pfam PF01722 BolA-like protein 21 74 4.4E-12 T 11-10-2018 IPR002634 BolA protein AMD27_03325 a8130ebfc7019990f6b391fefd588c71 83 SUPERFAMILY SSF82657 2 78 3.4E-23 T 11-10-2018 IPR036065 BolA-like superfamily AMD27_03325 a8130ebfc7019990f6b391fefd588c71 83 PIRSF PIRSF003113 1 82 9.4E-20 T 11-10-2018 IPR002634 BolA protein AMD27_03325 a8130ebfc7019990f6b391fefd588c71 83 Gene3D G3DSA:3.30.300.90 1 82 4.1E-25 T 11-10-2018 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 227 41.097 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 160 184 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 Pfam PF00318 Ribosomal protein S2 11 226 5.7E-94 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 6 228 2.8E-103 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 Gene3D G3DSA:1.10.287.610 105 152 1.6E-91 T 11-10-2018 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 SUPERFAMILY SSF52313 8 235 3.14E-93 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 Gene3D G3DSA:3.40.50.10490 11 221 1.6E-91 T 11-10-2018 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 160 177 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 89 106 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 198 212 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 8 26 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 177 188 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10745 87bf593cb8995c84ca314bfa25cc90da 249 PRINTS PR00395 Ribosomal protein S2 signature 39 48 8.1E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 Gene3D G3DSA:2.40.100.10 3 167 2.2E-65 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 40 57 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 165 5.7E-49 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 SUPERFAMILY SSF50891 6 167 3.36E-58 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 PIRSF PIRSF001467 1 169 2.9E-28 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 6.3E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 6.3E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_09085 f74c9903d00445b5d6541193a2f31e81 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 6.3E-13 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_03510 68670053b337b0e334673caa175ace0d 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMD27_03510 68670053b337b0e334673caa175ace0d 409 SUPERFAMILY SSF53901 1 251 5.19E-58 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03510 68670053b337b0e334673caa175ace0d 409 Gene3D G3DSA:3.40.47.10 1 252 1.3E-59 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03510 68670053b337b0e334673caa175ace0d 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 2.8E-40 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMD27_03510 68670053b337b0e334673caa175ace0d 409 Gene3D G3DSA:3.40.47.10 258 408 6.8E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03510 68670053b337b0e334673caa175ace0d 409 SMART SM00825 Beta-ketoacyl synthase 4 409 4.7E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMD27_03510 68670053b337b0e334673caa175ace0d 409 SUPERFAMILY SSF53901 212 407 9.46E-63 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_03510 68670053b337b0e334673caa175ace0d 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 364 2.0E-31 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMD27_03140 ef68a3aef2e26fe7dbadaa135f015d6d 372 Gene3D G3DSA:3.30.1540.10 226 314 2.4E-105 T 11-10-2018 AMD27_03140 ef68a3aef2e26fe7dbadaa135f015d6d 372 Gene3D G3DSA:3.40.50.10540 5 333 2.4E-105 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMD27_03140 ef68a3aef2e26fe7dbadaa135f015d6d 372 SUPERFAMILY SSF89796 4 370 6.02E-105 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMD27_03140 ef68a3aef2e26fe7dbadaa135f015d6d 372 Pfam PF02515 CoA-transferase family III 5 359 1.9E-93 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMD27_12345 05b46c29d8abb54ef47054514a460e8f 339 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 218 231 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12345 05b46c29d8abb54ef47054514a460e8f 339 Pfam PF00146 NADH dehydrogenase 24 329 1.4E-119 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12345 05b46c29d8abb54ef47054514a460e8f 339 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 17 336 24.044 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12345 05b46c29d8abb54ef47054514a460e8f 339 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 63 78 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 5.5E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 Gene3D G3DSA:1.10.10.10 124 222 9.1E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 Gene3D G3DSA:3.40.50.2300 1 123 1.5E-34 T 11-10-2018 AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 SUPERFAMILY SSF52172 1 178 1.57E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 Pfam PF00072 Response regulator receiver domain 3 112 4.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 SMART SM00862 145 216 3.4E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_05220 04d636732ccbb0f624f53f477c3cfd53 223 SMART SM00448 1 112 8.3E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_07735 50c3c85a140aeaf245254a8d3eacd757 477 Gene3D G3DSA:3.40.50.2000 20 452 7.3E-140 T 11-10-2018 AMD27_07735 50c3c85a140aeaf245254a8d3eacd757 477 Pfam PF00982 Glycosyltransferase family 20 20 456 8.3E-110 T 11-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 AMD27_07735 50c3c85a140aeaf245254a8d3eacd757 477 SUPERFAMILY SSF53756 2 457 1.07E-121 T 11-10-2018 AMD27_07735 50c3c85a140aeaf245254a8d3eacd757 477 Gene3D G3DSA:3.40.50.2000 232 441 7.3E-140 T 11-10-2018 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 Pfam PF00206 Lyase 12 309 4.9E-67 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 ProSitePatterns PS00163 Fumarate lyases signature. 291 300 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 Gene3D G3DSA:1.20.200.10 116 446 3.7E-147 T 11-10-2018 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 Pfam PF08328 Adenylosuccinate lyase C-terminal 328 445 7.9E-45 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 Gene3D G3DSA:1.10.40.30 379 445 3.7E-147 T 11-10-2018 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 Gene3D G3DSA:1.10.275.10 1 115 4.1E-48 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 PRINTS PR00149 Fumarate lyase superfamily signature 160 178 1.1E-17 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 PRINTS PR00149 Fumarate lyase superfamily signature 115 133 1.1E-17 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 1.1E-17 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 1.1E-17 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 SUPERFAMILY SSF48557 4 447 4.08E-105 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_10555 d5a2da08fa0be0fc00ff1dadd1bac757 462 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 10 455 3.1E-130 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_10610 914db8af15cc7f59c087f1882ac2c777 488 SUPERFAMILY SSF74653 409 487 5.3E-10 T 11-10-2018 AMD27_10610 914db8af15cc7f59c087f1882ac2c777 488 Pfam PF08017 Fibrinogen binding protein 135 412 2.3E-15 T 11-10-2018 IPR012969 Fibrinogen binding protein AMD27_10610 914db8af15cc7f59c087f1882ac2c777 488 Gene3D G3DSA:3.30.1150.10 390 486 2.9E-14 T 11-10-2018 AMD27_09025 399de31e08b0a97c15d58dbbe606e95c 218 SUPERFAMILY SSF116726 131 213 1.05E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMD27_09025 399de31e08b0a97c15d58dbbe606e95c 218 Pfam PF02254 TrkA-N domain 4 119 1.4E-27 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMD27_09025 399de31e08b0a97c15d58dbbe606e95c 218 Gene3D G3DSA:3.40.50.720 3 136 1.4E-36 T 11-10-2018 AMD27_09025 399de31e08b0a97c15d58dbbe606e95c 218 Gene3D G3DSA:3.30.70.1450 137 213 3.6E-5 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMD27_09025 399de31e08b0a97c15d58dbbe606e95c 218 SUPERFAMILY SSF51735 4 133 2.84E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03785 9aaa8036769633551cd6a9d9bcf76cba 102 Gene3D G3DSA:3.90.220.20 2 101 1.1E-17 T 11-10-2018 AMD27_03785 9aaa8036769633551cd6a9d9bcf76cba 102 Pfam PF01420 Type I restriction modification DNA specificity domain 20 90 3.5E-12 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AMD27_03785 9aaa8036769633551cd6a9d9bcf76cba 102 SUPERFAMILY SSF116734 3 102 5.23E-24 T 11-10-2018 AMD27_06905 de2efb15dfc7cb010692a55c3f8bcd74 269 Pfam PF04233 Phage Mu protein F like protein 155 259 7.6E-22 T 11-10-2018 IPR006528 Phage head morphogenesis domain AMD27_06905 de2efb15dfc7cb010692a55c3f8bcd74 269 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 157 261 2.7E-23 T 11-10-2018 IPR006528 Phage head morphogenesis domain AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 SUPERFAMILY SSF53850 90 305 2.53E-35 T 11-10-2018 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 Pfam PF03466 LysR substrate binding domain 97 305 8.6E-15 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 Gene3D G3DSA:1.10.10.10 1 86 3.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.9E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 Gene3D G3DSA:3.40.190.10 92 303 2.0E-60 T 11-10-2018 AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 SUPERFAMILY SSF46785 2 83 4.76E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_11715 59551a55d0196241ce434929f1aed6f2 330 Gene3D G3DSA:3.40.190.10 170 279 2.0E-60 T 11-10-2018 AMD27_07915 e9170220249edc071b6fff6401848f73 269 SUPERFAMILY SSF51735 8 254 1.54E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07915 e9170220249edc071b6fff6401848f73 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 8.2E-64 T 11-10-2018 AMD27_07915 e9170220249edc071b6fff6401848f73 269 Gene3D G3DSA:3.40.50.720 1 260 3.7E-80 T 11-10-2018 AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 7.4E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07915 e9170220249edc071b6fff6401848f73 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_11885 7c74510d9b0763ab0f6ccc4d893f8a71 104 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 28 99 2.1E-15 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMD27_11885 7c74510d9b0763ab0f6ccc4d893f8a71 104 SUPERFAMILY SSF141000 12 102 1.7E-25 T 11-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AMD27_11885 7c74510d9b0763ab0f6ccc4d893f8a71 104 Gene3D G3DSA:1.10.20.60 9 102 4.3E-20 T 11-10-2018 AMD27_11885 7c74510d9b0763ab0f6ccc4d893f8a71 104 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 13 104 4.4E-27 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMD27_11885 7c74510d9b0763ab0f6ccc4d893f8a71 104 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 11 104 21.652 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMD27_05300 56d89e7e8474f581d305dff295ece0bd 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 36.806 T 11-10-2018 IPR005583 Peroxide stress protein YaaA AMD27_05300 56d89e7e8474f581d305dff295ece0bd 259 Pfam PF03883 Peroxide stress protein YaaA 1 243 2.1E-89 T 11-10-2018 IPR005583 Peroxide stress protein YaaA AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.70.1440 680 879 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:1.20.1640.10 14 505 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:1.20.1640.10 527 1031 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Pfam PF00873 AcrB/AcrD/AcrF family 7 1032 2.4E-166 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.5E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.5E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.5E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 2.5E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.5E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82714 187 266 7.06E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.2090.10 181 270 4.8E-250 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.2090.10 731 819 4.8E-250 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82693 581 671 2.38E-5 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.70.1320 138 328 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.70.1430 581 679 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82866 815 1038 1.05E-44 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82693 139 325 8.37E-15 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 Gene3D G3DSA:3.30.70.1430 42 827 4.8E-250 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82866 300 486 4.71E-36 T 11-10-2018 AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82714 734 818 8.5E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_00240 94dff2203b5543eb8f22129f2b25c6bb 1044 SUPERFAMILY SSF82693 42 138 3.84E-18 T 11-10-2018 AMD27_07775 ed9ff789e19db01cb6eb3e23d7316add 216 SUPERFAMILY SSF53448 22 208 1.58E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_07775 ed9ff789e19db01cb6eb3e23d7316add 216 Pfam PF12804 MobA-like NTP transferase domain 24 176 8.8E-22 T 11-10-2018 IPR025877 MobA-like NTP transferase AMD27_07775 ed9ff789e19db01cb6eb3e23d7316add 216 Gene3D G3DSA:3.90.550.10 19 214 7.0E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_03725 630ff8e85911d38f7e6dc340629b1bfc 301 Pfam PF08338 Domain of unknown function (DUF1731) 253 298 5.5E-17 T 11-10-2018 IPR013549 Domain of unknown function DUF1731 AMD27_03725 630ff8e85911d38f7e6dc340629b1bfc 301 SUPERFAMILY SSF51735 6 298 4.5E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03725 630ff8e85911d38f7e6dc340629b1bfc 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 6 295 6.4E-83 T 11-10-2018 IPR010099 Epimerase family protein SDR39U1 AMD27_03725 630ff8e85911d38f7e6dc340629b1bfc 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 225 5.2E-24 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMD27_03725 630ff8e85911d38f7e6dc340629b1bfc 301 Gene3D G3DSA:3.40.50.720 6 300 3.4E-68 T 11-10-2018 AMD27_05580 28434c341b87e3f05dbc46088f9d9100 459 Pfam PF12501 Phosphate ATP-binding cassette transporter 8 180 1.4E-34 T 11-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 AMD27_05580 28434c341b87e3f05dbc46088f9d9100 459 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 455 6.4E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_05580 28434c341b87e3f05dbc46088f9d9100 459 Gene3D G3DSA:1.10.3720.10 223 457 3.4E-37 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_05580 28434c341b87e3f05dbc46088f9d9100 459 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 164 454 5.5E-87 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMD27_05580 28434c341b87e3f05dbc46088f9d9100 459 SUPERFAMILY SSF161098 166 450 1.96E-35 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_14810 910afb98c9300ed16cd37b49bb01caf2 222 Gene3D G3DSA:3.30.420.10 23 207 3.6E-37 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_14810 910afb98c9300ed16cd37b49bb01caf2 222 Pfam PF01612 3'-5' exonuclease 40 201 9.5E-21 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_14810 910afb98c9300ed16cd37b49bb01caf2 222 SUPERFAMILY SSF53098 14 202 1.19E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_14810 910afb98c9300ed16cd37b49bb01caf2 222 SMART SM00474 33 204 8.1E-7 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_02685 0d6ecc9777e6ee602b2f3b88615859f9 173 Pfam PF03412 Peptidase C39 family 9 70 7.7E-6 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMD27_15140 d13f5a717859b4475a93685da90f2a1b 128 Pfam PF12973 ChrR Cupin-like domain 30 116 1.4E-15 T 11-10-2018 IPR025979 ChrR-like cupin domain AMD27_15140 d13f5a717859b4475a93685da90f2a1b 128 Gene3D G3DSA:2.60.120.10 20 125 5.2E-21 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_15140 d13f5a717859b4475a93685da90f2a1b 128 SUPERFAMILY SSF51182 26 117 8.91E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 188 208 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Gene3D G3DSA:3.80.30.20 182 417 2.7E-80 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Pfam PF01938 TRAM domain 416 477 6.9E-10 T 11-10-2018 IPR002792 TRAM domain AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Pfam PF00919 Uncharacterized protein family UPF0004 34 134 4.0E-29 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 SUPERFAMILY SSF102114 166 408 1.83E-61 T 11-10-2018 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 34 472 1.6E-141 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 33 478 69.357 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 34 472 4.3E-175 T 11-10-2018 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Pfam PF04055 Radical SAM superfamily 188 362 2.2E-28 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 SMART SM00729 184 404 1.1E-58 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_13790 90133a46c01b75604d0b3032a77e07dc 485 Gene3D G3DSA:3.40.50.12160 33 166 8.5E-35 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 131 9.9E-40 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 SUPERFAMILY SSF51344 3 85 4.71E-25 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 8.2E-30 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 19.436 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 Gene3D G3DSA:1.20.5.440 90 132 4.8E-7 T 11-10-2018 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 17 89 4.0E-32 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 SUPERFAMILY SSF46604 87 135 3.4E-10 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00660 af72862fa14775fd3302b9fabe9542e3 139 Gene3D G3DSA:2.60.15.10 2 89 1.9E-29 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 SUPERFAMILY SSF100934 534 609 1.57E-8 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Gene3D G3DSA:2.60.34.10 382 522 1.7E-63 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 SUPERFAMILY SSF100920 384 539 1.44E-58 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 SUPERFAMILY SSF53067 2 182 1.87E-65 T 11-10-2018 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Gene3D G3DSA:1.20.1270.10 523 602 4.6E-20 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Gene3D G3DSA:3.30.420.40 5 378 6.8E-165 T 11-10-2018 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 31 43 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 364 384 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 3 16 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 387 406 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 137 157 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 468 484 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 53 61 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 197 207 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 PRINTS PR00301 70kDa heat shock protein signature 333 349 8.7E-77 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 4.8E-282 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Pfam PF00012 Hsp70 protein 4 602 3.5E-259 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 641 36.069 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Gene3D G3DSA:3.30.420.40 179 365 6.8E-165 T 11-10-2018 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 Gene3D G3DSA:3.90.640.10 228 315 6.8E-165 T 11-10-2018 AMD27_00075 ea0b79d583303b407328d6f56b433ce5 646 SUPERFAMILY SSF53067 186 381 3.37E-66 T 11-10-2018 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 18 227 3.6E-80 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 SMART SM00986 62 223 1.0E-33 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 SMART SM00987 62 223 1.0E-33 T 11-10-2018 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 SUPERFAMILY SSF52141 15 235 6.32E-86 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 Pfam PF03167 Uracil DNA glycosylase superfamily 67 222 5.8E-25 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 17 234 39.353 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 70 79 - T 11-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_09600 21593b213aed100c5bede47403ab43c7 237 Gene3D G3DSA:3.40.470.10 1 237 6.1E-95 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 SUPERFAMILY SSF48173 204 475 1.27E-107 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 PRINTS PR00147 DNA photolyase signature 391 405 3.0E-22 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 PRINTS PR00147 DNA photolyase signature 141 157 3.0E-22 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 PRINTS PR00147 DNA photolyase signature 332 348 3.0E-22 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 PRINTS PR00147 DNA photolyase signature 352 370 3.0E-22 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 Pfam PF03441 FAD binding domain of DNA photolyase 282 474 7.6E-83 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 Gene3D G3DSA:1.25.40.80 132 293 9.1E-74 T 11-10-2018 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 SUPERFAMILY SSF52425 1 176 9.81E-45 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 Gene3D G3DSA:3.40.50.620 3 209 9.1E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 Gene3D G3DSA:1.10.579.10 300 476 5.9E-80 T 11-10-2018 AMD27_05320 5ce982801dff114180be5df60bd8a33f 476 Pfam PF00875 DNA photolyase 3 166 4.2E-40 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 AMD27_12135 f022282688cccf5dd2f4b8971ed8f2ab 127 SUPERFAMILY SSF52172 6 125 2.85E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_12135 f022282688cccf5dd2f4b8971ed8f2ab 127 Gene3D G3DSA:3.40.50.12740 7 127 1.1E-40 T 11-10-2018 AMD27_12135 f022282688cccf5dd2f4b8971ed8f2ab 127 Pfam PF00072 Response regulator receiver domain 10 122 1.7E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12135 f022282688cccf5dd2f4b8971ed8f2ab 127 SMART SM00448 8 121 5.3E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 79 762 2.9E-170 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 SUPERFAMILY SSF81271 433 493 6.1E-18 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Pfam PF04607 Region found in RelA / SpoT proteins 274 383 2.3E-34 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Gene3D G3DSA:3.10.20.30 430 502 6.5E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Pfam PF13328 HD domain 70 214 2.1E-37 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 SUPERFAMILY SSF81301 231 394 2.29E-58 T 11-10-2018 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Pfam PF13291 ACT domain 689 763 7.1E-18 T 11-10-2018 IPR002912 ACT domain AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Gene3D G3DSA:1.10.3210.10 37 230 6.1E-41 T 11-10-2018 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Pfam PF02824 TGS domain 434 493 5.9E-18 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Gene3D G3DSA:3.30.70.260 690 767 3.9E-17 T 11-10-2018 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 SMART SM00954 274 383 1.4E-60 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 SUPERFAMILY SSF55021 689 765 4.08E-12 T 11-10-2018 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 SUPERFAMILY SSF109604 32 229 8.16E-44 T 11-10-2018 AMD27_02630 2d5955cfa9a32d103597a263c45e4eba 768 Gene3D G3DSA:3.30.460.10 232 363 1.3E-49 T 11-10-2018 AMD27_04130 2b62132c2d5dcdb0e82cd1f2a33e4ed6 214 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 200 7.6E-27 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMD27_04130 2b62132c2d5dcdb0e82cd1f2a33e4ed6 214 SUPERFAMILY SSF52266 34 212 6.87E-48 T 11-10-2018 AMD27_04130 2b62132c2d5dcdb0e82cd1f2a33e4ed6 214 Gene3D G3DSA:3.40.50.1110 32 214 1.7E-67 T 11-10-2018 IPR036514 SGNH hydrolase superfamily AMD27_04130 2b62132c2d5dcdb0e82cd1f2a33e4ed6 214 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 36 46 - T 11-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 SMART SM00849 15 173 2.5E-34 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 5 243 39.361 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 Gene3D G3DSA:3.60.15.10 2 243 2.5E-78 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 Pfam PF00753 Metallo-beta-lactamase superfamily 15 173 4.9E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 PIRSF PIRSF005457 1 243 4.2E-91 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 SUPERFAMILY SSF56281 4 237 1.44E-64 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 9 238 1.1E-91 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMD27_09950 8d0a5bfb2f5b6979cb52372dace9f697 243 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 174 243 1.3E-22 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMD27_02435 a992ece4666d4803023722a591a688e9 446 SUPERFAMILY SSF53474 35 308 2.83E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_02435 a992ece4666d4803023722a591a688e9 446 Pfam PF00561 alpha/beta hydrolase fold 58 293 1.0E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_02435 a992ece4666d4803023722a591a688e9 446 Gene3D G3DSA:3.40.50.1820 38 313 2.3E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 ProSitePatterns PS00893 Nudix box signature. 154 175 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 Gene3D G3DSA:3.90.79.20 3 119 1.3E-20 T 11-10-2018 AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 87 118 6.8E-11 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 Pfam PF00293 NUDIX domain 123 231 1.5E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 Gene3D G3DSA:3.90.79.10 120 248 3.0E-38 T 11-10-2018 AMD27_04915 a928a74d95b1ffe4718cdef521ae8511 251 SUPERFAMILY SSF55811 64 238 9.04E-42 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_14885 644381ca337435d3591df6b436503470 400 Gene3D G3DSA:3.30.160.390 1 87 2.7E-28 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMD27_14885 644381ca337435d3591df6b436503470 400 Pfam PF00589 Phage integrase family 226 366 3.7E-19 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_14885 644381ca337435d3591df6b436503470 400 Gene3D G3DSA:1.10.443.10 204 377 4.1E-13 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_14885 644381ca337435d3591df6b436503470 400 SUPERFAMILY SSF56349 97 376 1.5E-57 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_14885 644381ca337435d3591df6b436503470 400 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 97 145 3.1E-7 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMD27_14885 644381ca337435d3591df6b436503470 400 Pfam PF13356 Arm DNA-binding domain 2 86 2.2E-18 T 11-10-2018 IPR025166 Integrase, DNA-binding domain AMD27_14885 644381ca337435d3591df6b436503470 400 Gene3D G3DSA:1.10.150.130 92 203 4.3E-26 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_03635 bffe4d855be706ab762744fc45ba9ef3 151 Pfam PF01814 Hemerythrin HHE cation binding domain 12 124 9.5E-12 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMD27_03635 bffe4d855be706ab762744fc45ba9ef3 151 SUPERFAMILY SSF47188 3 124 2.75E-29 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMD27_03635 bffe4d855be706ab762744fc45ba9ef3 151 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 123 1.9E-33 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMD27_03635 bffe4d855be706ab762744fc45ba9ef3 151 Gene3D G3DSA:1.20.120.50 1 127 4.2E-33 T 11-10-2018 IPR035938 Hemerythrin-like superfamily AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 8 261 1.4E-104 T 11-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 SUPERFAMILY SSF51735 6 260 1.13E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 4.8E-65 T 11-10-2018 AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 Gene3D G3DSA:3.40.50.720 2 261 2.0E-80 T 11-10-2018 AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.5E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.5E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.5E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.1E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04810 65dddebdd7c4de123c8211a2e35c42e3 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 162 25.016 T 11-10-2018 IPR007551 Protein of unknown function DUF520 AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 SUPERFAMILY SSF89963 90 162 1.73E-26 T 11-10-2018 IPR036183 YajQ-like superfamily AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 SUPERFAMILY SSF89963 2 88 1.28E-27 T 11-10-2018 IPR036183 YajQ-like superfamily AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 Pfam PF04461 Protein of unknown function (DUF520) 2 161 5.0E-60 T 11-10-2018 IPR007551 Protein of unknown function DUF520 AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 Gene3D G3DSA:3.30.70.990 9 95 3.6E-27 T 11-10-2018 IPR035570 UPF0234, N-terminal AMD27_13670 74ab580735130a0073cc78b77dc4d10d 162 Gene3D G3DSA:3.30.70.860 96 162 4.1E-28 T 11-10-2018 IPR035571 UPF0234-like, C-terminal AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 234 368 2.6E-17 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 114 7.9E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 SUPERFAMILY SSF56645 15 217 9.42E-38 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 Gene3D G3DSA:1.20.140.10 220 393 3.9E-49 T 11-10-2018 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 PIRSF PIRSF016578 2 390 2.8E-28 T 11-10-2018 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 SUPERFAMILY SSF47203 232 382 1.93E-20 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 Gene3D G3DSA:1.10.540.10 11 117 1.9E-26 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_15190 c05cc8a69674d13ddce19d155e42afee 393 Gene3D G3DSA:2.40.110.10 118 216 8.7E-24 T 11-10-2018 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 Gene3D G3DSA:2.20.28.10 1 54 5.7E-29 T 11-10-2018 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 PRINTS PR00163 Rubredoxin signature 3 19 8.8E-11 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 PRINTS PR00163 Rubredoxin signature 33 49 8.8E-11 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 Pfam PF00301 Rubredoxin 3 49 5.6E-25 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 11-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 PIRSF PIRSF000071 1 54 3.8E-26 T 11-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 AMD27_04175 fb42647df8d8f8a33b43dcc9e4b35d33 54 SUPERFAMILY SSF57802 1 53 2.69E-23 T 11-10-2018 AMD27_06270 d5fe450e50988a0f3505f838185d74c6 348 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 343 1.2E-116 T 11-10-2018 IPR017686 Phage/plasmid-like protein AMD27_06270 d5fe450e50988a0f3505f838185d74c6 348 Pfam PF06067 Domain of unknown function (DUF932) 77 328 9.4E-78 T 11-10-2018 IPR026325 Protein of unknown function DUF932 AMD27_03545 f9e13e57f6a748d578b1d2bc30a08aeb 154 Pfam PF00583 Acetyltransferase (GNAT) family 35 116 4.6E-14 T 11-10-2018 IPR000182 GNAT domain AMD27_03545 f9e13e57f6a748d578b1d2bc30a08aeb 154 Gene3D G3DSA:3.40.630.30 1 151 2.1E-36 T 11-10-2018 AMD27_03545 f9e13e57f6a748d578b1d2bc30a08aeb 154 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 9 139 2.3E-34 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 AMD27_03545 f9e13e57f6a748d578b1d2bc30a08aeb 154 SUPERFAMILY SSF55729 1 142 2.36E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_06920 ce7c5660b5c618efc106accb4dfd545c 394 PIRSF PIRSF029215 5 393 1.7E-116 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 AMD27_06920 ce7c5660b5c618efc106accb4dfd545c 394 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 19 189 9.4E-51 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 AMD27_08215 a32f15fc3e10acdf40cf01552573b5b4 76 Gene3D G3DSA:1.10.1220.10 1 48 1.3E-16 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMD27_08215 a32f15fc3e10acdf40cf01552573b5b4 76 Pfam PF03869 Arc-like DNA binding domain 2 45 2.4E-11 T 11-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMD27_08215 a32f15fc3e10acdf40cf01552573b5b4 76 SUPERFAMILY SSF47598 3 47 3.61E-11 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 SUPERFAMILY SSF51735 2 244 3.84E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 Pfam PF00106 short chain dehydrogenase 3 190 2.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04265 269c03592a456ffeadcd3755e10d8580 262 Gene3D G3DSA:3.40.50.720 3 262 1.0E-47 T 11-10-2018 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 SUPERFAMILY SSF56300 44 402 3.52E-72 T 11-10-2018 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 Pfam PF02872 5'-nucleotidase, C-terminal domain 420 592 1.8E-22 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 Gene3D G3DSA:3.60.21.10 40 404 5.1E-104 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 Pfam PF00149 Calcineurin-like phosphoesterase 51 306 6.7E-7 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 ProSitePatterns PS00786 5'-nucleotidase signature 2. 133 144 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 477 500 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 289 312 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 333 353 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 567 586 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 45 63 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 PRINTS PR01607 Apyrase family signature 261 278 8.0E-25 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 SUPERFAMILY SSF55816 405 626 1.44E-37 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_09165 4a4b8f49bd3b55b5b3ff5d6f4242d1ee 685 Gene3D G3DSA:3.90.780.10 423 627 2.3E-53 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Gene3D G3DSA:2.120.10.90 501 736 1.0E-13 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 4.0E-135 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 735 0.0 T 11-10-2018 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 689 1.6E-5 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 633 1.9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 SUPERFAMILY SSF56719 32 484 5.49E-154 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 736 32.896 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 SUPERFAMILY SSF101904 502 735 3.92E-46 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Gene3D G3DSA:1.10.268.10 370 455 2.8E-175 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Gene3D G3DSA:3.90.199.10 33 484 2.8E-175 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 SMART SM00434 12 462 2.4E-220 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_00860 b7424f337524f1d54a36c25af937d51d 739 Gene3D G3DSA:3.30.1360.40 239 332 2.8E-175 T 11-10-2018 AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 191 5.4E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 SUPERFAMILY SSF47616 79 203 1.67E-17 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 71 3.3E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 Gene3D G3DSA:3.40.30.10 1 82 2.3E-27 T 11-10-2018 AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 Gene3D G3DSA:1.20.1050.10 83 201 1.4E-27 T 11-10-2018 AMD27_13060 90f3e7498b3c1d02067eea9479e5dc79 210 SUPERFAMILY SSF52833 2 76 3.9E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_06460 d8adb5a23681c9ac1ac0b3a0ebaa34ec 476 SUPERFAMILY SSF53383 76 474 8.2E-98 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_06460 d8adb5a23681c9ac1ac0b3a0ebaa34ec 476 Pfam PF00155 Aminotransferase class I and II 107 468 8.5E-49 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_06460 d8adb5a23681c9ac1ac0b3a0ebaa34ec 476 Gene3D G3DSA:3.40.640.10 126 367 1.0E-141 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_06460 d8adb5a23681c9ac1ac0b3a0ebaa34ec 476 Gene3D G3DSA:3.90.1150.10 94 471 1.0E-141 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 2 940 26.259 T 11-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Gene3D G3DSA:3.40.50.10810 153 424 6.3E-85 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Gene3D G3DSA:2.30.30.140 2 54 3.8E-24 T 11-10-2018 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Gene3D G3DSA:2.30.30.930 56 117 2.4E-5 T 11-10-2018 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Gene3D G3DSA:3.30.360.80 688 759 3.7E-21 T 11-10-2018 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 SUPERFAMILY SSF52540 151 379 2.85E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 SMART SM00490 493 577 1.3E-14 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 SUPERFAMILY SSF52540 279 616 1.85E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Pfam PF00176 SNF2 family N-terminal domain 177 348 2.7E-11 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Pfam PF00271 Helicase conserved C-terminal domain 467 577 1.4E-11 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Pfam PF12137 RNA polymerase recycling family C-terminal 582 939 5.9E-117 T 11-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 SMART SM00487 153 352 1.2E-19 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_05515 611aa4f87820ddc82ea61eec5c7fff3e 942 Gene3D G3DSA:3.40.50.300 434 609 2.0E-37 T 11-10-2018 AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 Gene3D G3DSA:2.40.30.160 126 232 1.7E-16 T 11-10-2018 AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 Pfam PF01571 Aminomethyltransferase folate-binding domain 8 93 6.4E-8 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 Gene3D G3DSA:3.30.70.1400 10 94 3.7E-18 T 11-10-2018 AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 PIRSF PIRSF006487 4 102 1.4E-6 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 PIRSF PIRSF006487 88 230 3.0 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 117 181 2.4E-21 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site AMD27_12730 563dcdb3596ecfaa98d696223c8b1a63 242 SUPERFAMILY SSF103025 8 169 7.38E-37 T 11-10-2018 AMD27_11430 d1beccdb0455f6840cd0d2979bc1ffea 127 SUPERFAMILY SSF55718 4 108 2.83E-12 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMD27_11430 d1beccdb0455f6840cd0d2979bc1ffea 127 Gene3D G3DSA:3.30.1050.10 4 122 3.4E-13 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMD27_11430 d1beccdb0455f6840cd0d2979bc1ffea 127 Pfam PF02036 SCP-2 sterol transfer family 34 108 1.5E-7 T 11-10-2018 IPR003033 SCP2 sterol-binding domain AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 Gene3D G3DSA:3.30.70.100 210 304 1.2E-18 T 11-10-2018 AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 SUPERFAMILY SSF50182 143 206 2.91E-16 T 11-10-2018 IPR010920 LSM domain superfamily AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 Gene3D G3DSA:2.30.30.60 159 207 1.2E-15 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 Pfam PF00924 Mechanosensitive ion channel 104 300 1.0E-42 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 SUPERFAMILY SSF82689 212 310 6.93E-21 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMD27_15200 9ff831a8a5aa844e74753586efc39d9a 328 SUPERFAMILY SSF82861 57 142 5.36E-8 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMD27_05525 d301eef2dbd0b43f023c6295222a9b0a 286 Pfam PF00892 EamA-like transporter family 6 135 1.7E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_05525 d301eef2dbd0b43f023c6295222a9b0a 286 Pfam PF00892 EamA-like transporter family 149 280 2.8E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_05525 d301eef2dbd0b43f023c6295222a9b0a 286 SUPERFAMILY SSF103481 41 134 5.62E-6 T 11-10-2018 AMD27_05525 d301eef2dbd0b43f023c6295222a9b0a 286 SUPERFAMILY SSF103481 182 281 1.96E-10 T 11-10-2018 AMD27_17890 85291cad4359b04eec199c7c44004eab 104 SUPERFAMILY SSF46785 4 97 3.64E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_17890 85291cad4359b04eec199c7c44004eab 104 Pfam PF01638 HxlR-like helix-turn-helix 17 97 1.7E-28 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMD27_17890 85291cad4359b04eec199c7c44004eab 104 Gene3D G3DSA:1.10.10.10 1 103 1.1E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04825 eebb27797c9d586dced313b001a9412c 94 Pfam PF05164 Cell division protein ZapA 7 78 2.1E-11 T 11-10-2018 IPR007838 Cell division protein ZapA-like AMD27_04825 eebb27797c9d586dced313b001a9412c 94 SUPERFAMILY SSF102829 6 89 9.02E-14 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily AMD27_08595 b886e053020eec038800e891d3acf7d4 139 Gene3D G3DSA:2.40.50.100 61 136 4.0E-27 T 11-10-2018 AMD27_08595 b886e053020eec038800e891d3acf7d4 139 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 136 5.5E-39 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMD27_08595 b886e053020eec038800e891d3acf7d4 139 Pfam PF00364 Biotin-requiring enzyme 66 136 4.9E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_08595 b886e053020eec038800e891d3acf7d4 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 67 80 3.1E-14 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMD27_08595 b886e053020eec038800e891d3acf7d4 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 112 3.1E-14 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMD27_08595 b886e053020eec038800e891d3acf7d4 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 98 3.1E-14 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMD27_08595 b886e053020eec038800e891d3acf7d4 139 SUPERFAMILY SSF51230 66 136 4.06E-21 T 11-10-2018 IPR011053 Single hybrid motif AMD27_10250 56d990200c8e4544087df48c128b913e 237 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 7.2E-9 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMD27_10250 56d990200c8e4544087df48c128b913e 237 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 7.2E-9 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMD27_10250 56d990200c8e4544087df48c128b913e 237 Pfam PF00325 Bacterial regulatory proteins, crp family 176 207 1.4E-14 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMD27_10250 56d990200c8e4544087df48c128b913e 237 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 2.1E-20 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMD27_10250 56d990200c8e4544087df48c128b913e 237 SMART SM00100 14 132 3.8E-20 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain AMD27_10250 56d990200c8e4544087df48c128b913e 237 SMART SM00419 170 218 1.4E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMD27_10250 56d990200c8e4544087df48c128b913e 237 Gene3D G3DSA:2.60.120.10 21 148 5.2E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_10250 56d990200c8e4544087df48c128b913e 237 SUPERFAMILY SSF51206 20 147 3.01E-29 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like AMD27_10250 56d990200c8e4544087df48c128b913e 237 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 81 99 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMD27_10250 56d990200c8e4544087df48c128b913e 237 Gene3D G3DSA:1.10.10.10 149 217 9.9E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10250 56d990200c8e4544087df48c128b913e 237 SUPERFAMILY SSF46785 149 218 1.05E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_10250 56d990200c8e4544087df48c128b913e 237 ProSitePatterns PS00042 Crp-type HTH domain signature. 178 201 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Gene3D G3DSA:1.25.40.10 163 267 1.3E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SUPERFAMILY SSF81901 123 266 7.15E-34 T 11-10-2018 AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SUPERFAMILY SSF81901 10 142 3.4E-31 T 11-10-2018 AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 56 91 5.5E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 201 236 6.0E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 20 55 3.1E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 92 128 6.5E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 165 200 6.7E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 SMART SM00671 129 164 5.6E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 20 55 7.7E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 92 127 1.6E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 201 233 7.9E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 238 266 2.5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 130 164 4.8E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 165 200 9.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Pfam PF08238 Sel1 repeat 57 91 5.1E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06450 7a54adacd6e06cd0ebbe9864f4b153a1 267 Gene3D G3DSA:1.25.40.10 5 162 3.8E-47 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_10280 3857148bba41740a7bc8bd2946a2223e 388 PIRSF PIRSF001549 6 352 2.3E-34 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMD27_10280 3857148bba41740a7bc8bd2946a2223e 388 Gene3D G3DSA:3.30.930.10 5 325 2.8E-58 T 11-10-2018 AMD27_10280 3857148bba41740a7bc8bd2946a2223e 388 Pfam PF13393 Histidyl-tRNA synthetase 12 321 7.2E-98 T 11-10-2018 AMD27_10280 3857148bba41740a7bc8bd2946a2223e 388 SUPERFAMILY SSF55681 7 319 5.2E-51 T 11-10-2018 AMD27_10280 3857148bba41740a7bc8bd2946a2223e 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 369 25.368 T 11-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 Pfam PF01632 Ribosomal protein L35 2 60 1.8E-24 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 Gene3D G3DSA:2.40.50.530 4 63 4.9E-22 T 11-10-2018 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.545 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.2E-19 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 4.2E-19 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 4.2E-19 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 SUPERFAMILY SSF143034 2 63 1.83E-22 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02740 8bf428358d082a2ab1a76a26fcd96e29 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 2.2E-26 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMD27_15365 f9b15c8c6617e3609c336303ce527126 304 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 143 155 - T 11-10-2018 IPR033140 Lipase, GDXG, putative serine active site AMD27_15365 f9b15c8c6617e3609c336303ce527126 304 Gene3D G3DSA:3.40.50.1820 11 302 6.9E-75 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_15365 f9b15c8c6617e3609c336303ce527126 304 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 75 91 - T 11-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 AMD27_15365 f9b15c8c6617e3609c336303ce527126 304 SUPERFAMILY SSF53474 55 298 9.06E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_15365 f9b15c8c6617e3609c336303ce527126 304 Pfam PF07859 alpha/beta hydrolase fold 75 278 9.2E-54 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMD27_07405 1f40d1305fd89a9264b5180eaae40973 88 SMART SM01324 5 83 1.5E-10 T 11-10-2018 IPR025582 YARHG domain AMD27_07405 1f40d1305fd89a9264b5180eaae40973 88 Pfam PF13308 YARHG domain 26 82 2.5E-6 T 11-10-2018 IPR025582 YARHG domain AMD27_01545 d7af3e55932240224f6e9285cf0ac60b 454 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 264 429 8.2E-14 T 11-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal AMD27_01545 d7af3e55932240224f6e9285cf0ac60b 454 Pfam PF15864 Protein glycosylation ligase 52 77 1.3E-10 T 11-10-2018 IPR031726 Protein glycosylation ligase domain AMD27_01545 d7af3e55932240224f6e9285cf0ac60b 454 Pfam PF04932 O-Antigen ligase 89 239 6.7E-18 T 11-10-2018 IPR007016 O-antigen ligase-related AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.70.1430 571 673 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.5E-110 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.70.1440 674 874 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82693 135 330 3.14E-21 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82693 38 130 4.53E-28 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82866 296 497 2.35E-46 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82693 569 663 2.01E-26 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.2090.10 726 814 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Pfam PF00873 AcrB/AcrD/AcrF family 1 1042 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82714 182 272 1.83E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:1.20.1640.10 8 516 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:3.30.70.1430 38 822 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82866 811 1044 1.31E-41 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 Gene3D G3DSA:1.20.1640.10 517 1039 0.0 T 11-10-2018 AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 SUPERFAMILY SSF82714 727 814 5.89E-23 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMD27_04285 0ef41aab0031c68906fa867ced51361c 1060 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1053 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 Gene3D G3DSA:3.50.50.60 327 450 3.5E-106 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05145 ae2ca442448f40d84085c8409c537328 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 1.7E-229 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 SUPERFAMILY SSF52833 1 100 3.8E-25 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_05145 ae2ca442448f40d84085c8409c537328 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 Gene3D G3DSA:3.50.50.60 212 509 3.5E-106 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.6E-38 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.6E-38 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.6E-38 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.6E-38 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.6E-38 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 SUPERFAMILY SSF51905 204 514 6.22E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PIRSF PIRSF000238 1 521 4.3E-251 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 Gene3D G3DSA:3.40.30.80 1 199 1.3E-60 T 11-10-2018 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 9.2E-46 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.9E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_05145 ae2ca442448f40d84085c8409c537328 521 SUPERFAMILY SSF52833 103 195 1.29E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_05145 ae2ca442448f40d84085c8409c537328 521 Pfam PF13192 Thioredoxin domain 120 194 2.1E-10 T 11-10-2018 IPR012336 Thioredoxin-like fold AMD27_12130 2f6f3a3c88a02d5ef20e330f4873020b 122 SUPERFAMILY SSF52172 1 120 7.26E-38 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_12130 2f6f3a3c88a02d5ef20e330f4873020b 122 Pfam PF00072 Response regulator receiver domain 4 115 8.6E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12130 2f6f3a3c88a02d5ef20e330f4873020b 122 Gene3D G3DSA:3.40.50.12740 1 122 1.3E-42 T 11-10-2018 AMD27_12130 2f6f3a3c88a02d5ef20e330f4873020b 122 SMART SM00448 2 115 2.8E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_08620 93eda411517b1ee564eadce93650d90e 631 Gene3D G3DSA:3.40.50.1820 178 397 1.1E-9 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_08620 93eda411517b1ee564eadce93650d90e 631 SUPERFAMILY SSF53474 40 418 4.67E-9 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_08620 93eda411517b1ee564eadce93650d90e 631 Pfam PF02450 Lecithin:cholesterol acyltransferase 224 346 3.8E-5 T 11-10-2018 IPR003386 Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase GO:0006629|GO:0008374 AMD27_12585 7b97bb2d58db1176f3edb1b9eeb283b5 363 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 239 362 4.0E-55 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMD27_12585 7b97bb2d58db1176f3edb1b9eeb283b5 363 SMART SM00771 223 354 1.3E-47 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMD27_12585 7b97bb2d58db1176f3edb1b9eeb283b5 363 Gene3D G3DSA:3.30.1400.10 221 361 5.4E-33 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 AMD27_12585 7b97bb2d58db1176f3edb1b9eeb283b5 363 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 226 352 4.0E-30 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMD27_12585 7b97bb2d58db1176f3edb1b9eeb283b5 363 SUPERFAMILY SSF64383 224 357 1.57E-29 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 SUPERFAMILY SSF52518 374 569 1.38E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Gene3D G3DSA:3.40.50.1220 190 362 7.0E-62 T 11-10-2018 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 SUPERFAMILY SSF52467 189 362 4.62E-65 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Gene3D G3DSA:3.40.50.970 1 181 1.3E-72 T 11-10-2018 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 1.9E-45 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 2.2E-44 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 SUPERFAMILY SSF52518 4 174 4.21E-63 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 166 1.6E-58 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 Gene3D G3DSA:3.40.50.970 367 574 4.5E-63 T 11-10-2018 AMD27_13525 850bafa32ee0d5baaee982f432767c81 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 1.2E-250 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 321 4.2E-147 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 SUPERFAMILY SSF56327 159 327 2.01E-59 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 321 6.1E-33 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 PIRSF PIRSF000102 1 326 6.1E-64 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 Gene3D G3DSA:3.90.110.10 157 328 1.0E-61 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 SUPERFAMILY SSF51735 4 157 1.19E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 154 7.3E-36 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 56.801 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMD27_13775 46d596fee326b9f105cb9de797fd1a49 328 Gene3D G3DSA:3.40.50.720 1 156 8.0E-58 T 11-10-2018 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 Gene3D G3DSA:3.40.50.150 8 245 6.0E-33 T 11-10-2018 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 Gene3D G3DSA:1.10.1020.10 64 163 6.0E-33 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 188 200 7.6E-8 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 7.6E-8 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 7.6E-8 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 249 2.5E-15 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 PIRSF PIRSF000398 1 274 8.0E-53 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 AMD27_08500 d069b61de5e5fa9299e6923838d03e9d 287 SUPERFAMILY SSF53335 6 268 1.66E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_04165 a095f51f77fce588875ea87ff17be048 311 Pfam PF00561 alpha/beta hydrolase fold 40 166 3.3E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_04165 a095f51f77fce588875ea87ff17be048 311 SUPERFAMILY SSF53474 11 303 2.32E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04165 a095f51f77fce588875ea87ff17be048 311 Gene3D G3DSA:3.40.50.1820 23 305 2.3E-56 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_14335 1354fbce95a92031e9d6ae19c02a27ce 110 Gene3D G3DSA:3.20.160.10 1 110 6.8E-43 T 11-10-2018 IPR038604 Type III effector HopJ superfamily AMD27_14335 1354fbce95a92031e9d6ae19c02a27ce 110 Pfam PF08888 HopJ type III effector protein 3 107 1.0E-40 T 11-10-2018 IPR014984 HopJ type III effector protein AMD27_08830 d9c8a36160ce8002d1cf878c201440f1 146 SUPERFAMILY SSF55174 12 107 1.3E-26 T 11-10-2018 AMD27_08830 d9c8a36160ce8002d1cf878c201440f1 146 Gene3D G3DSA:3.10.290.10 6 112 4.2E-35 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_08830 d9c8a36160ce8002d1cf878c201440f1 146 Pfam PF01479 S4 domain 13 58 5.4E-13 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_08830 d9c8a36160ce8002d1cf878c201440f1 146 SMART SM00363 13 76 1.2E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_08830 d9c8a36160ce8002d1cf878c201440f1 146 PIRSF PIRSF016821 10 135 5.8E-41 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 SUPERFAMILY SSF56801 27 545 1.7E-137 T 11-10-2018 AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 Gene3D G3DSA:3.40.50.12780 22 439 8.7E-97 T 11-10-2018 AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 Gene3D G3DSA:3.30.300.30 440 557 9.3E-30 T 11-10-2018 AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 530 1.4E-22 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_09440 bdc64ac971a12541beac80be46f137e3 557 Pfam PF00501 AMP-binding enzyme 39 443 1.5E-77 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_12310 3fd74c8d61d9f06a355fc40210e4cd92 211 Gene3D G3DSA:3.40.50.2020 2 207 1.1E-68 T 11-10-2018 AMD27_12310 3fd74c8d61d9f06a355fc40210e4cd92 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 4.1E-85 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMD27_12310 3fd74c8d61d9f06a355fc40210e4cd92 211 Pfam PF14681 Uracil phosphoribosyltransferase 7 206 4.7E-62 T 11-10-2018 AMD27_12310 3fd74c8d61d9f06a355fc40210e4cd92 211 SUPERFAMILY SSF53271 5 206 4.85E-64 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_12310 3fd74c8d61d9f06a355fc40210e4cd92 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.552 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMD27_14290 bd8e71b1874ba1104bdacf1705f96a65 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 278 2.0E-29 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMD27_12305 de5670c160bafea53f138bcf548c1176 98 SUPERFAMILY SSF50249 4 68 8.08E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_12305 de5670c160bafea53f138bcf548c1176 98 Gene3D G3DSA:2.40.50.140 2 86 9.3E-16 T 11-10-2018 AMD27_12305 de5670c160bafea53f138bcf548c1176 98 SMART SM00357 7 69 2.6E-9 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_12305 de5670c160bafea53f138bcf548c1176 98 Pfam PF00313 'Cold-shock' DNA-binding domain 8 68 8.1E-12 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_13490 c5a236ab72f2574276adde49134c6c6f 423 Gene3D G3DSA:3.40.50.2000 41 244 2.0E-28 T 11-10-2018 AMD27_13490 c5a236ab72f2574276adde49134c6c6f 423 SUPERFAMILY SSF53756 44 417 5.83E-69 T 11-10-2018 AMD27_13490 c5a236ab72f2574276adde49134c6c6f 423 Pfam PF00534 Glycosyl transferases group 1 233 392 5.0E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMD27_13490 c5a236ab72f2574276adde49134c6c6f 423 Gene3D G3DSA:3.40.50.2000 245 404 5.0E-33 T 11-10-2018 AMD27_13490 c5a236ab72f2574276adde49134c6c6f 423 Pfam PF13439 Glycosyltransferase Family 4 57 223 6.8E-24 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 SMART SM00411 1 90 3.8E-47 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 Gene3D G3DSA:4.10.520.10 1 90 1.6E-38 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 2.7E-35 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 7.9E-20 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 7.9E-20 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 7.9E-20 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_08725 51888b41d00ecce754bdfaaa38c9cdce 90 SUPERFAMILY SSF47729 1 89 5.0E-34 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_13335 fa1b6f5208e3ff14d88677a78f6ea29a 217 Gene3D G3DSA:3.90.470.20 97 189 7.4E-25 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMD27_13335 fa1b6f5208e3ff14d88677a78f6ea29a 217 SUPERFAMILY SSF56214 44 87 8.89E-8 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMD27_13335 fa1b6f5208e3ff14d88677a78f6ea29a 217 Gene3D G3DSA:3.90.470.20 13 96 7.4E-25 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMD27_13335 fa1b6f5208e3ff14d88677a78f6ea29a 217 SUPERFAMILY SSF56214 96 202 4.19E-19 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMD27_13335 fa1b6f5208e3ff14d88677a78f6ea29a 217 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 97 166 1.5E-13 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Gene3D G3DSA:1.20.120.1080 512 583 8.0E-14 T 11-10-2018 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 SMART SM00382 75 384 0.0026 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Pfam PF00270 DEAD/DEAH box helicase 65 216 2.6E-7 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 SMART SM00847 464 591 2.2E-31 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Pfam PF04408 Helicase associated domain (HA2) 466 614 4.7E-14 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 SUPERFAMILY SSF52540 61 599 2.83E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 SMART SM00490 303 404 3.2E-13 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Gene3D G3DSA:3.40.50.300 8 235 8.7E-73 T 11-10-2018 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Pfam PF00271 Helicase conserved C-terminal domain 288 403 2.1E-10 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Pfam PF11898 Domain of unknown function (DUF3418) 744 1315 2.0E-144 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Gene3D G3DSA:1.10.10.2130 425 469 1.5E-8 T 11-10-2018 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 654 730 1.7E-15 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 SMART SM00487 58 242 2.9E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_06055 00c70477b9eca94f6241f1636d436135 1320 Gene3D G3DSA:3.40.50.300 236 420 2.3E-48 T 11-10-2018 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 10 512 1.4E-155 T 11-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 402 428 4.9E-34 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 262 286 4.9E-34 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 350 369 4.9E-34 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 145 164 4.9E-34 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 180 204 4.9E-34 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12320 92ffa5a8912b9a1692a03a19009d97c5 538 Pfam PF00361 Proton-conducting membrane transporter 140 444 1.4E-65 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 SUPERFAMILY SSF53901 3 276 7.02E-86 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 Pfam PF00108 Thiolase, N-terminal domain 5 269 4.2E-83 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 PIRSF PIRSF000429 1 401 1.1E-132 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 8.8E-44 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 Gene3D G3DSA:3.40.47.10 6 282 5.4E-157 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.5E-141 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 SUPERFAMILY SSF53901 278 400 1.28E-42 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 401 2.7E-224 T 11-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AMD27_07825 14eae5ca658d5977caa1a6d16f7e55dc 401 Gene3D G3DSA:3.40.47.10 141 398 5.4E-157 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_10450 d7b7464cc260785a51c85337af9fec2e 326 PIRSF PIRSF026166 1 326 5.0E-122 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter AMD27_10450 d7b7464cc260785a51c85337af9fec2e 326 Gene3D G3DSA:1.20.1530.20 6 326 3.0E-33 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_10450 d7b7464cc260785a51c85337af9fec2e 326 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 317 4.0E-90 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 Pfam PF00270 DEAD/DEAH box helicase 27 200 1.5E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 SUPERFAMILY SSF52540 87 369 5.24E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 SMART SM00490 269 350 8.1E-32 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 Gene3D G3DSA:3.40.50.300 229 390 2.9E-47 T 11-10-2018 AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 Gene3D G3DSA:3.40.50.300 1 228 1.9E-71 T 11-10-2018 AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 SMART SM00487 22 232 8.1E-51 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_14200 977d64ec7a356604d3dea49fe7febe84 643 Pfam PF00271 Helicase conserved C-terminal domain 247 350 1.1E-25 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 461 5.9E-27 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 Gene3D G3DSA:3.50.50.60 15 337 3.7E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 SUPERFAMILY SSF51905 14 327 1.44E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.4E-28 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 2.4E-28 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 186 204 2.4E-28 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.4E-28 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.4E-28 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 Gene3D G3DSA:3.30.390.30 352 470 1.4E-31 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 Gene3D G3DSA:3.50.50.60 159 277 3.7E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 334 9.9E-58 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 159 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 186 211 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 49 64 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 3.6E-51 T 11-10-2018 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 SUPERFAMILY SSF55424 352 468 8.08E-30 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_10795 d50614f912ac8f80dd9fc658945ec759 471 PIRSF PIRSF000350 3 468 1.3E-67 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 SUPERFAMILY SSF54106 201 243 2.35E-6 T 11-10-2018 AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 Gene3D G3DSA:3.10.350.10 129 188 9.0E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 Gene3D G3DSA:3.10.350.10 198 251 4.4E-8 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 Pfam PF01476 LysM domain 201 242 6.4E-8 T 11-10-2018 IPR018392 LysM domain AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 Pfam PF01476 LysM domain 136 178 1.8E-10 T 11-10-2018 IPR018392 LysM domain AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 SUPERFAMILY SSF54106 135 178 2.35E-9 T 11-10-2018 AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 SMART SM00257 135 179 1.5E-10 T 11-10-2018 IPR018392 LysM domain AMD27_13570 9e461d01b0b122ae69b66adc7421b995 448 SMART SM00257 200 244 4.8E-6 T 11-10-2018 IPR018392 LysM domain AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 Gene3D G3DSA:1.10.10.10 3 88 1.9E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.9E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 Gene3D G3DSA:3.40.190.10 165 265 2.1E-52 T 11-10-2018 AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 Gene3D G3DSA:3.40.190.10 95 294 2.1E-52 T 11-10-2018 AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 Pfam PF03466 LysR substrate binding domain 91 296 3.9E-38 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 SUPERFAMILY SSF46785 5 115 5.64E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_04160 fb0bf62d83611b4d3baf9e61a8eb76a8 301 SUPERFAMILY SSF53850 92 299 6.3E-30 T 11-10-2018 AMD27_09695 7de2d89baf800d43e3bd7c29fb985d54 337 SUPERFAMILY SSF56112 7 307 1.88E-42 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_09695 7de2d89baf800d43e3bd7c29fb985d54 337 Pfam PF01636 Phosphotransferase enzyme family 23 237 2.0E-25 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMD27_09695 7de2d89baf800d43e3bd7c29fb985d54 337 Gene3D G3DSA:3.30.200.20 1 92 4.6E-25 T 11-10-2018 AMD27_09695 7de2d89baf800d43e3bd7c29fb985d54 337 Gene3D G3DSA:3.90.1200.10 93 333 1.0E-64 T 11-10-2018 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 Gene3D G3DSA:1.10.3210.10 444 581 5.4E-9 T 11-10-2018 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 30 877 2.1E-266 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 SUPERFAMILY SSF55021 809 877 1.75E-8 T 11-10-2018 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 888 280.15 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 SUPERFAMILY SSF109604 425 548 1.19E-13 T 11-10-2018 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 SUPERFAMILY SSF81593 191 312 2.82E-7 T 11-10-2018 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 SMART SM00471 453 600 2.3E-4 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 PIRSF PIRSF006288 9 884 2.9E-304 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 Pfam PF08335 GlnD PII-uridylyltransferase 175 317 7.3E-35 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 Pfam PF01966 HD domain 491 586 7.0E-8 T 11-10-2018 IPR006674 HD domain AMD27_09550 67161f438ea35eeaf3dbb0403a20d6c8 888 SUPERFAMILY SSF81301 39 166 7.85E-15 T 11-10-2018 AMD27_12535 5914445a1bfe474909954179610c9d7a 291 Gene3D G3DSA:3.40.50.150 56 289 9.0E-19 T 11-10-2018 AMD27_12535 5914445a1bfe474909954179610c9d7a 291 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 6 288 27.357 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 AMD27_12535 5914445a1bfe474909954179610c9d7a 291 SUPERFAMILY SSF53335 20 244 6.21E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_12535 5914445a1bfe474909954179610c9d7a 291 Pfam PF13489 Methyltransferase domain 57 214 1.6E-10 T 11-10-2018 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SMART SM00448 1047 1156 7.9E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Pfam PF12860 PAS fold 658 771 7.2E-43 T 11-10-2018 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 915 1026 1.0E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Gene3D G3DSA:3.30.565.10 869 1030 3.2E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SUPERFAMILY SSF55874 861 1030 1.2E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_15055 6df64404354aff9a236203f9a103c643 1164 PRINTS PR00344 Bacterial sensor protein C-terminal signature 988 1006 6.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1012 1025 6.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 PRINTS PR00344 Bacterial sensor protein C-terminal signature 953 967 6.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Gene3D G3DSA:1.10.287.130 772 868 2.0E-12 T 11-10-2018 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Gene3D G3DSA:1.20.1730.10 34 520 1.4E-15 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SMART SM00388 805 870 7.1E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Pfam PF00512 His Kinase A (phospho-acceptor) domain 805 870 7.3E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Gene3D G3DSA:3.40.50.2300 1041 1159 8.7E-17 T 11-10-2018 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SUPERFAMILY SSF47384 793 870 5.3E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SUPERFAMILY SSF55785 645 765 9.07E-9 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SUPERFAMILY SSF52172 1047 1157 3.7E-14 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Pfam PF00072 Response regulator receiver domain 1049 1154 4.5E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 Gene3D G3DSA:3.30.450.20 640 771 2.8E-11 T 11-10-2018 AMD27_15055 6df64404354aff9a236203f9a103c643 1164 SMART SM00387 914 1028 1.6E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 SUPERFAMILY SSF55120 1 258 9.93E-84 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 PIRSF PIRSF001430 1 256 8.2E-74 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 Gene3D G3DSA:3.30.70.580 1 106 3.4E-33 T 11-10-2018 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 Pfam PF01416 tRNA pseudouridine synthase 9 104 2.7E-5 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 Pfam PF01416 tRNA pseudouridine synthase 144 246 3.7E-29 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 239 1.7E-62 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 32.62 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_02040 791ef79406e187a6d5d6ee40f78db028 265 Gene3D G3DSA:3.30.70.660 107 244 9.9E-47 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AMD27_14355 c712a87da7a09e61df3c4b9783766dd3 59 Gene3D G3DSA:3.30.50.10 1 58 2.4E-20 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 AMD27_14355 c712a87da7a09e61df3c4b9783766dd3 59 Pfam PF03884 DNA gyrase inhibitor YacG 6 53 1.1E-21 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMD27_14355 c712a87da7a09e61df3c4b9783766dd3 59 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 59 17.625 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMD27_14355 c712a87da7a09e61df3c4b9783766dd3 59 SUPERFAMILY SSF57716 4 57 1.57E-18 T 11-10-2018 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 SUPERFAMILY SSF55816 431 606 4.58E-39 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 SUPERFAMILY SSF56300 36 346 2.61E-68 T 11-10-2018 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 235 252 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 301 321 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 555 574 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 475 498 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 40 58 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 PRINTS PR01607 Apyrase family signature 254 277 6.9E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 Pfam PF00149 Calcineurin-like phosphoesterase 42 271 5.6E-7 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 Gene3D G3DSA:3.90.780.10 413 617 3.2E-48 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 Pfam PF02872 5'-nucleotidase, C-terminal domain 437 581 4.7E-31 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 Gene3D G3DSA:3.60.21.10 32 396 3.5E-101 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_07305 5a994edee2583bf4bde62a5766f75650 633 ProSitePatterns PS00785 5'-nucleotidase signature 1. 42 54 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 SUPERFAMILY SSF63411 268 455 1.91E-29 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 SUPERFAMILY SSF63411 38 250 2.2E-60 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 Pfam PF00675 Insulinase (Peptidase family M16) 49 195 1.3E-26 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 Pfam PF05193 Peptidase M16 inactive domain 203 385 2.3E-29 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 Gene3D G3DSA:3.30.830.10 259 452 1.3E-43 T 11-10-2018 AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 Gene3D G3DSA:3.30.830.10 35 256 8.7E-79 T 11-10-2018 AMD27_07495 521919e09ba0bcf53a919a6adf1e9a0a 456 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 70 93 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMD27_12860 214d79fc4409b5a92f14e694e7ccfbf1 237 Gene3D G3DSA:3.20.20.190 1 237 1.8E-50 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMD27_12860 214d79fc4409b5a92f14e694e7ccfbf1 237 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 231 5.4E-28 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMD27_12860 214d79fc4409b5a92f14e694e7ccfbf1 237 SUPERFAMILY SSF51695 2 236 1.57E-45 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMD27_11280 0a33e80cc54815a119452ad2f0edc8d3 268 SUPERFAMILY SSF51366 16 263 5.77E-83 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_11280 0a33e80cc54815a119452ad2f0edc8d3 268 Gene3D G3DSA:3.20.20.70 2 267 5.9E-94 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_11280 0a33e80cc54815a119452ad2f0edc8d3 268 Pfam PF00218 Indole-3-glycerol phosphate synthase 9 261 1.4E-93 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMD27_11280 0a33e80cc54815a119452ad2f0edc8d3 268 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 7 263 34.331 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMD27_11280 0a33e80cc54815a119452ad2f0edc8d3 268 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AMD27_11240 3404c4dbe8a62990f95778bed40f8344 292 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 8 292 28.134 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMD27_11240 3404c4dbe8a62990f95778bed40f8344 292 Gene3D G3DSA:1.20.120.1780 173 292 2.9E-10 T 11-10-2018 AMD27_11240 3404c4dbe8a62990f95778bed40f8344 292 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 13 291 1.6E-95 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMD27_11240 3404c4dbe8a62990f95778bed40f8344 292 Pfam PF01040 UbiA prenyltransferase family 31 273 8.1E-57 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMD27_11240 3404c4dbe8a62990f95778bed40f8344 292 Gene3D G3DSA:1.10.357.140 26 172 3.9E-39 T 11-10-2018 AMD27_16485 18edf0b5c906305645a32fe40feb0de6 262 SUPERFAMILY SSF53098 102 259 2.4E-40 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_16485 18edf0b5c906305645a32fe40feb0de6 262 Gene3D G3DSA:3.30.420.10 105 253 3.4E-21 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_16485 18edf0b5c906305645a32fe40feb0de6 262 Pfam PF00665 Integrase core domain 109 221 4.3E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMD27_17035 18edf0b5c906305645a32fe40feb0de6 262 SUPERFAMILY SSF53098 102 259 2.4E-40 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_17035 18edf0b5c906305645a32fe40feb0de6 262 Gene3D G3DSA:3.30.420.10 105 253 3.4E-21 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_17035 18edf0b5c906305645a32fe40feb0de6 262 Pfam PF00665 Integrase core domain 109 221 4.3E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMD27_06070 c1dd542f8ddc5b6a7250d0222a603972 333 Pfam PF05726 Pirin C-terminal cupin domain 200 300 2.3E-20 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMD27_06070 c1dd542f8ddc5b6a7250d0222a603972 333 SUPERFAMILY SSF51182 57 307 1.86E-45 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_06070 c1dd542f8ddc5b6a7250d0222a603972 333 Gene3D G3DSA:2.60.120.10 47 295 2.3E-52 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_06070 c1dd542f8ddc5b6a7250d0222a603972 333 Pfam PF02678 Pirin 49 130 1.3E-21 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMD27_06070 c1dd542f8ddc5b6a7250d0222a603972 333 Gene3D G3DSA:2.60.120.10 153 269 2.3E-52 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 286 7.4E-94 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 72.944 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Gene3D G3DSA:3.30.479.20 153 268 9.3E-38 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Pfam PF00889 Elongation factor TS 71 269 6.4E-63 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Gene3D G3DSA:1.10.286.20 188 234 9.3E-38 T 11-10-2018 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Gene3D G3DSA:1.10.8.10 1 56 2.7E-24 T 11-10-2018 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 SUPERFAMILY SSF46934 4 54 6.72E-18 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 Gene3D G3DSA:3.30.479.20 57 148 1.4E-25 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_10740 be61e1f66c3b121143f91eb081acba61 291 SUPERFAMILY SSF54713 57 269 3.6E-44 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMD27_01520 7a1b66870c4ea40ff257290560ba6c81 273 SUPERFAMILY SSF48452 38 127 1.42E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_01520 7a1b66870c4ea40ff257290560ba6c81 273 Gene3D G3DSA:1.25.40.10 29 148 5.5E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_05150 93f7bfb59b8f9e776476d940eebb2cee 223 Pfam PF02525 Flavodoxin-like fold 3 207 4.9E-33 T 11-10-2018 IPR003680 Flavodoxin-like fold AMD27_05150 93f7bfb59b8f9e776476d940eebb2cee 223 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 212 24.681 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMD27_05150 93f7bfb59b8f9e776476d940eebb2cee 223 SUPERFAMILY SSF52218 1 214 1.09E-37 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_05150 93f7bfb59b8f9e776476d940eebb2cee 223 Gene3D G3DSA:3.40.50.360 1 215 1.8E-45 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Gene3D G3DSA:2.40.50.100 227 304 2.2E-18 T 11-10-2018 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Pfam PF00364 Biotin-requiring enzyme 228 298 2.3E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Pfam PF00364 Biotin-requiring enzyme 117 186 4.7E-14 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Pfam PF00364 Biotin-requiring enzyme 2 72 6.0E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Gene3D G3DSA:2.40.50.100 1 78 1.7E-17 T 11-10-2018 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Gene3D G3DSA:2.40.50.100 116 193 6.3E-15 T 11-10-2018 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Pfam PF02817 e3 binding domain 363 397 3.5E-11 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 SUPERFAMILY SSF51230 114 206 2.49E-18 T 11-10-2018 IPR011053 Single hybrid motif AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Gene3D G3DSA:3.30.559.10 417 660 1.3E-76 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 SUPERFAMILY SSF52777 423 660 1.78E-70 T 11-10-2018 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 SUPERFAMILY SSF47005 359 402 1.06E-9 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 SUPERFAMILY SSF51230 2 87 1.7E-19 T 11-10-2018 IPR011053 Single hybrid motif AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Gene3D G3DSA:4.10.320.10 363 406 1.6E-14 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 SUPERFAMILY SSF51230 226 315 2.22E-20 T 11-10-2018 IPR011053 Single hybrid motif AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 138 167 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 249 278 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 434 659 4.2E-67 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMD27_15280 cc1502edf24c49ed86751cb7c221620b 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 23 52 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_14005 84a56baa745967624692990c09af5cd9 177 PIRSF PIRSF002162 1 177 3.9E-43 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 34.819 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_14005 84a56baa745967624692990c09af5cd9 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14005 84a56baa745967624692990c09af5cd9 177 Gene3D G3DSA:3.90.930.12 1 82 7.5E-27 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.4E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_14005 84a56baa745967624692990c09af5cd9 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.4E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_14005 84a56baa745967624692990c09af5cd9 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.4E-32 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_14005 84a56baa745967624692990c09af5cd9 177 Pfam PF00347 Ribosomal protein L6 11 82 2.3E-16 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 Pfam PF00347 Ribosomal protein L6 90 164 5.7E-18 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 Gene3D G3DSA:3.90.930.12 83 177 1.3E-36 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 SUPERFAMILY SSF56053 83 177 7.48E-34 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14005 84a56baa745967624692990c09af5cd9 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.0E-70 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMD27_14005 84a56baa745967624692990c09af5cd9 177 SUPERFAMILY SSF56053 1 82 1.03E-22 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_12335 d2509ee2208bed26f55b90ad7487771e 173 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 1.9E-31 T 11-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12335 d2509ee2208bed26f55b90ad7487771e 173 Gene3D G3DSA:1.20.120.1200 1 163 9.0E-45 T 11-10-2018 AMD27_17885 5a9650248dbe34428945552198624b44 138 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 34 60 6.1E-8 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMD27_17885 5a9650248dbe34428945552198624b44 138 Gene3D G3DSA:1.20.1290.10 1 137 9.1E-29 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMD27_17885 5a9650248dbe34428945552198624b44 138 Pfam PF02627 Carboxymuconolactone decarboxylase family 19 69 3.1E-6 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMD27_17885 5a9650248dbe34428945552198624b44 138 SUPERFAMILY SSF69118 10 135 1.66E-26 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 133 157 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 157 178 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 416 433 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 52 68 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 357 376 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 33 52 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PRINTS PR01806 Virulence factor MviN signature 259 285 2.0E-69 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 474 19.792 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 505 8.0E-131 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 PIRSF PIRSF002869 1 513 8.2E-154 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_00335 3e138329d66650bf9156b774180625d5 514 Pfam PF03023 MviN-like protein 30 471 1.8E-128 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMD27_10835 091ad108017df7e58a59d005958a823d 172 Gene3D G3DSA:1.25.40.10 2 172 7.8E-37 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_10835 091ad108017df7e58a59d005958a823d 172 Pfam PF08238 Sel1 repeat 20 53 0.009 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 Pfam PF08238 Sel1 repeat 56 99 0.36 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 Pfam PF08238 Sel1 repeat 137 162 0.005 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 Pfam PF08238 Sel1 repeat 100 134 5.0E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 SUPERFAMILY SSF81901 82 170 1.12E-18 T 11-10-2018 AMD27_10835 091ad108017df7e58a59d005958a823d 172 SMART SM00671 20 54 0.026 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 SMART SM00671 136 171 0.056 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 SMART SM00671 100 135 0.0045 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10835 091ad108017df7e58a59d005958a823d 172 SUPERFAMILY SSF81901 16 88 1.44E-9 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 329 1.4E-52 T 11-10-2018 IPR016040 NAD(P)-binding domain AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 Gene3D G3DSA:3.40.50.720 4 321 6.2E-95 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 Gene3D G3DSA:3.90.25.10 185 333 6.2E-95 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 PRINTS PR01713 Nucleotide sugar epimerase signature 261 276 2.0E-25 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 PRINTS PR01713 Nucleotide sugar epimerase signature 300 317 2.0E-25 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 2.0E-25 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 PRINTS PR01713 Nucleotide sugar epimerase signature 221 236 2.0E-25 T 11-10-2018 AMD27_13020 9fdf1317faafee643b1184c04c26c4fb 340 SUPERFAMILY SSF51735 1 338 8.17E-87 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 84 195 4.2E-44 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Pfam PF00171 Aldehyde dehydrogenase family 604 1051 2.1E-114 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Gene3D G3DSA:3.40.605.10 602 1052 1.5E-140 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Pfam PF01619 Proline dehydrogenase 206 506 1.2E-97 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Gene3D G3DSA:3.40.309.10 826 1021 1.5E-140 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Gene3D G3DSA:3.20.20.220 29 117 1.5E-8 T 11-10-2018 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 Gene3D G3DSA:3.20.20.220 139 547 4.1E-149 T 11-10-2018 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 SUPERFAMILY SSF53720 598 1052 8.9E-121 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 851 862 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 PIRSF PIRSF000197 11 1248 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 SUPERFAMILY SSF51730 198 548 1.02E-116 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 SUPERFAMILY SSF81935 25 197 1.24E-61 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMD27_09225 f2d49e58f4d75b05bf8c98950e6d13ef 1250 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 551 1050 3.9E-212 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMD27_15415 6bd6fc282d178969b214198f9b6f3282 232 SMART SM00382 26 218 7.6E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15415 6bd6fc282d178969b214198f9b6f3282 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 1.0E-104 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AMD27_15415 6bd6fc282d178969b214198f9b6f3282 232 Pfam PF00005 ABC transporter 17 161 4.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_15415 6bd6fc282d178969b214198f9b6f3282 232 Gene3D G3DSA:3.40.50.300 1 227 1.0E-59 T 11-10-2018 AMD27_15415 6bd6fc282d178969b214198f9b6f3282 232 SUPERFAMILY SSF52540 1 220 2.13E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 PRINTS PR01021 OMPA domain signature 94 110 3.8E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 PRINTS PR01021 OMPA domain signature 49 71 3.8E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 PRINTS PR01021 OMPA domain signature 79 94 3.8E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 Pfam PF00691 OmpA family 48 144 1.1E-19 T 11-10-2018 IPR006665 OmpA-like domain AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 SUPERFAMILY SSF103088 45 150 2.62E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_12795 bdfd3eedaf700518dd0180f265f5499c 153 Gene3D G3DSA:3.30.1330.60 32 152 5.3E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_09725 618fe6955a2687cffccfbd7f8575a7e1 157 Gene3D G3DSA:3.40.50.300 3 153 1.1E-38 T 11-10-2018 AMD27_09725 618fe6955a2687cffccfbd7f8575a7e1 157 SUPERFAMILY SSF52540 25 127 1.59E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09725 618fe6955a2687cffccfbd7f8575a7e1 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 11 140 4.9E-39 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMD27_09725 618fe6955a2687cffccfbd7f8575a7e1 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 136 2.3E-37 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMD27_05740 fed94e6efecc5a5fb1ab1d1bf99bb062 263 SUPERFAMILY SSF55469 34 256 1.96E-47 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_05740 fed94e6efecc5a5fb1ab1d1bf99bb062 263 Gene3D G3DSA:3.40.109.10 31 263 1.7E-53 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_05740 fed94e6efecc5a5fb1ab1d1bf99bb062 263 Pfam PF00881 Nitroreductase family 40 240 4.6E-35 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMD27_06340 f726044c1859689cbc9c97fbb1c1f8c7 421 Pfam PF13742 OB-fold nucleic acid binding domain 6 113 1.4E-15 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMD27_06340 f726044c1859689cbc9c97fbb1c1f8c7 421 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 413 7.0E-73 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMD27_06340 f726044c1859689cbc9c97fbb1c1f8c7 421 Pfam PF02601 Exonuclease VII, large subunit 137 361 7.5E-46 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMD27_06340 f726044c1859689cbc9c97fbb1c1f8c7 421 Pfam PF02601 Exonuclease VII, large subunit 286 411 2.4E-9 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 Pfam PF12697 Alpha/beta hydrolase family 80 318 1.3E-16 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 SUPERFAMILY SSF53474 51 326 6.43E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00111 Alpha/beta hydrolase fold signature 149 162 2.1E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 118 2.1E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00111 Alpha/beta hydrolase fold signature 270 284 2.1E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 Gene3D G3DSA:3.40.50.1820 37 328 1.2E-76 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00412 Epoxide hydrolase signature 103 118 2.8E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00412 Epoxide hydrolase signature 268 284 2.8E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_04120 8de3788ecf7c3932f8396df609092113 330 PRINTS PR00412 Epoxide hydrolase signature 302 324 2.8E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 11 938 21.025 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 SUPERFAMILY SSF52374 11 660 1.71E-138 T 11-10-2018 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 246 269 4.0E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 574 583 4.0E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 60 71 4.0E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 540 553 4.0E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 414 429 4.0E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Gene3D G3DSA:1.10.730.20 653 937 8.1E-87 T 11-10-2018 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 36 650 5.0E-204 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Pfam PF08264 Anticodon-binding domain of tRNA 698 853 7.6E-28 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 67 78 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Pfam PF06827 Zinc finger found in FPG and IleRS 907 934 8.9E-5 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 SUPERFAMILY SSF50677 213 416 2.2E-50 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Gene3D G3DSA:3.90.740.10 204 421 3.5E-231 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 Gene3D G3DSA:3.40.50.620 34 642 3.5E-231 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 SUPERFAMILY SSF47323 665 934 2.8E-72 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_15890 4116554fcc2146c0e79f5f2c5c578822 948 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 24 853 4.5E-275 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 SMART SM00344 4 113 2.4E-44 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.5E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 SUPERFAMILY SSF54909 66 152 2.15E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_03475 52862db467a2f32339de52a60afd1aca 154 SUPERFAMILY SSF46785 3 61 7.32E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_03475 52862db467a2f32339de52a60afd1aca 154 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 1.6E-19 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMD27_03475 52862db467a2f32339de52a60afd1aca 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 1.2E-18 T 11-10-2018 AMD27_03475 52862db467a2f32339de52a60afd1aca 154 Gene3D G3DSA:1.10.10.10 1 55 3.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03475 52862db467a2f32339de52a60afd1aca 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMD27_03475 52862db467a2f32339de52a60afd1aca 154 Gene3D G3DSA:3.30.70.920 56 149 5.3E-21 T 11-10-2018 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 Gene3D G3DSA:3.40.1190.10 2 288 1.5E-87 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 Gene3D G3DSA:3.90.190.20 289 426 4.5E-27 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 Pfam PF08245 Mur ligase middle domain 51 192 5.5E-14 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 TIGRFAM TIGR01499 folC: bifunctional protein FolC 29 421 1.7E-102 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 SUPERFAMILY SSF53244 289 424 3.48E-24 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 49 72 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 PIRSF PIRSF001563 2 427 8.8E-107 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMD27_03180 7847b18b97452de9f0837ace58c87cae 427 SUPERFAMILY SSF53623 9 286 4.58E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_11040 ae85a6f32187886968858b0e7817b672 425 SUPERFAMILY SSF55073 266 424 6.28E-45 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_11040 ae85a6f32187886968858b0e7817b672 425 Pfam PF00990 Diguanylate cyclase, GGDEF domain 262 421 4.2E-46 T 11-10-2018 IPR000160 GGDEF domain AMD27_11040 ae85a6f32187886968858b0e7817b672 425 SMART SM00267 250 425 1.6E-50 T 11-10-2018 IPR000160 GGDEF domain AMD27_11040 ae85a6f32187886968858b0e7817b672 425 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 260 424 3.7E-47 T 11-10-2018 IPR000160 GGDEF domain AMD27_11040 ae85a6f32187886968858b0e7817b672 425 Gene3D G3DSA:3.30.70.270 248 425 1.3E-50 T 11-10-2018 AMD27_03650 233b17b2232897e19485f7c1707ac61e 132 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 117 29.105 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE AMD27_03650 233b17b2232897e19485f7c1707ac61e 132 Pfam PF04355 SmpA / OmlA family 30 106 3.0E-23 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMD27_03650 233b17b2232897e19485f7c1707ac61e 132 Gene3D G3DSA:3.30.1450.10 29 117 6.8E-23 T 11-10-2018 IPR037873 BamE-like AMD27_02715 3c0d8d5d4cb48bfaef1706e7729294f5 152 Gene3D G3DSA:2.60.40.790 33 139 1.6E-21 T 11-10-2018 IPR008978 HSP20-like chaperone AMD27_02715 3c0d8d5d4cb48bfaef1706e7729294f5 152 SUPERFAMILY SSF49764 31 138 8.37E-18 T 11-10-2018 IPR008978 HSP20-like chaperone AMD27_02715 3c0d8d5d4cb48bfaef1706e7729294f5 152 Pfam PF00011 Hsp20/alpha crystallin family 42 138 1.2E-12 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMD27_09110 d95a4952a111a8a42973e3173399275e 378 Pfam PF01098 Cell cycle protein 36 377 1.2E-96 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_09110 d95a4952a111a8a42973e3173399275e 378 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 27 378 24.917 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_09110 d95a4952a111a8a42973e3173399275e 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 33 378 8.7E-116 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 3.6E-142 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Gene3D G3DSA:3.40.50.300 18 181 2.1E-37 T 11-10-2018 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 SUPERFAMILY SSF46785 257 330 1.5E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Gene3D G3DSA:1.10.10.10 257 334 6.0E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 1.9E-29 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 335 175.53 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 SMART SM00382 51 178 9.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 SUPERFAMILY SSF52540 20 252 1.06E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Gene3D G3DSA:1.10.8.60 182 255 8.6E-32 T 11-10-2018 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 328 1.0E-27 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMD27_10585 5484580d9b5b5479329e3c0c028effa0 335 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 235 2.0E-115 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 SUPERFAMILY SSF52540 1 199 1.81E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 Hamap MF_00165 Thymidylate kinase [tmk]. 1 202 29.189 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 Gene3D G3DSA:3.40.50.300 1 202 2.7E-63 T 11-10-2018 AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 ProSitePatterns PS01331 Thymidylate kinase signature. 91 103 - T 11-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 191 1.1E-52 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMD27_05835 00e4c15e52ef74bbb0711c3313fd7b9e 202 Pfam PF02223 Thymidylate kinase 5 192 1.2E-51 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMD27_15380 20008ff46d338494cc19ec6e16e813d5 180 Gene3D G3DSA:1.25.40.20 2 179 9.4E-15 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_15380 20008ff46d338494cc19ec6e16e813d5 180 Pfam PF13637 Ankyrin repeats (many copies) 101 137 6.1E-6 T 11-10-2018 AMD27_15380 20008ff46d338494cc19ec6e16e813d5 180 SUPERFAMILY SSF48403 16 138 1.87E-10 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 Pfam PF03466 LysR substrate binding domain 88 283 3.7E-35 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 Gene3D G3DSA:1.10.10.10 2 94 4.6E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 Gene3D G3DSA:3.40.190.10 166 272 1.1E-47 T 11-10-2018 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 Gene3D G3DSA:3.40.190.10 97 285 1.1E-47 T 11-10-2018 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 SUPERFAMILY SSF46785 2 88 1.78E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 SUPERFAMILY SSF53850 88 294 2.04E-29 T 11-10-2018 AMD27_11920 d90341183c32e3e8c920bd21de566b8e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.5E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 Pfam PF00710 Asparaginase, N-terminal 3 180 2.1E-32 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 1.6E-8 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 80 98 1.6E-8 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 257 275 1.6E-8 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 Gene3D G3DSA:3.40.50.1170 1 202 2.9E-37 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 SUPERFAMILY SSF53774 1 323 2.09E-54 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 SMART SM00870 3 319 8.1E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 PIRSF PIRSF001220 1 317 1.9E-32 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 PIRSF PIRSF500176 1 319 1.2E-41 T 11-10-2018 AMD27_02045 178cf85005db3bb7e1a4ac40a8d80cae 325 Gene3D G3DSA:3.40.50.40 209 322 1.2E-9 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 AMD27_12315 9fdc53be4c636b48a710171912cb214a 518 Pfam PF00361 Proton-conducting membrane transporter 127 446 1.9E-66 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12315 9fdc53be4c636b48a710171912cb214a 518 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 501 3.0E-120 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMD27_12315 9fdc53be4c636b48a710171912cb214a 518 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 501 17.36 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMD27_08870 95796d0d8d5a3c6cfa6497be6f2a2f93 162 SMART SM00935 10 159 2.5E-15 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMD27_08870 95796d0d8d5a3c6cfa6497be6f2a2f93 162 Gene3D G3DSA:3.30.910.20 16 162 6.1E-16 T 11-10-2018 IPR024930 Skp domain superfamily AMD27_08870 95796d0d8d5a3c6cfa6497be6f2a2f93 162 SUPERFAMILY SSF111384 21 159 9.94E-19 T 11-10-2018 AMD27_08870 95796d0d8d5a3c6cfa6497be6f2a2f93 162 Pfam PF03938 Outer membrane protein (OmpH-like) 11 157 1.7E-16 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 344 3.7E-190 T 11-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 1.2E-89 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 SUPERFAMILY SSF51569 3 328 1.07E-103 T 11-10-2018 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 2.0E-93 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 Gene3D G3DSA:3.20.20.70 1 345 7.2E-152 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07245 92b22f3c00961e7bd5ebb324551b183c 345 PIRSF PIRSF001359 1 329 1.4E-79 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMD27_12855 9164b4ca20ec32704bbd25f58e25f2ca 194 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 26 186 1.0E-70 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMD27_12855 9164b4ca20ec32704bbd25f58e25f2ca 194 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 185 6.4E-52 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMD27_12855 9164b4ca20ec32704bbd25f58e25f2ca 194 Pfam PF01923 Cobalamin adenosyltransferase 8 172 3.7E-53 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMD27_12855 9164b4ca20ec32704bbd25f58e25f2ca 194 Gene3D G3DSA:1.20.1200.10 17 189 1.2E-53 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMD27_12855 9164b4ca20ec32704bbd25f58e25f2ca 194 SUPERFAMILY SSF89028 7 185 2.55E-55 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMD27_04725 6597b7405562397771be62be09ab7049 230 Gene3D G3DSA:1.10.340.30 26 137 1.2E-75 T 11-10-2018 AMD27_04725 6597b7405562397771be62be09ab7049 230 Pfam PF00633 Helix-hairpin-helix motif 105 132 8.6E-9 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 PIRSF PIRSF001435 3 214 5.7E-51 T 11-10-2018 AMD27_04725 6597b7405562397771be62be09ab7049 230 SMART SM00478 43 190 4.1E-53 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 ProSitePatterns PS01155 Endonuclease III family signature. 107 136 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 Hamap MF_00942 Endonuclease III [nth]. 3 214 36.644 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMD27_04725 6597b7405562397771be62be09ab7049 230 SUPERFAMILY SSF48150 8 211 1.02E-70 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 Gene3D G3DSA:1.10.1670.10 16 208 1.2E-75 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 192 208 1.3E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 39 173 2.2E-17 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMD27_04725 6597b7405562397771be62be09ab7049 230 TIGRFAM TIGR01083 nth: endonuclease III 8 199 9.7E-84 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 ProSitePatterns PS01081 TetR-type HTH domain signature. 35 66 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 2.0E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 Gene3D G3DSA:1.10.357.10 15 199 4.2E-50 T 11-10-2018 AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 SUPERFAMILY SSF46689 17 91 4.36E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 SUPERFAMILY SSF48498 92 199 7.41E-16 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_02920 bddd2debc09fe14fb719b22f0bb31431 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 67 2.9E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00880 36af1b394d78affadc9aefe718f8643b 178 Pfam PF00719 Inorganic pyrophosphatase 18 174 1.1E-51 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMD27_00880 36af1b394d78affadc9aefe718f8643b 178 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.481 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMD27_00880 36af1b394d78affadc9aefe718f8643b 178 Gene3D G3DSA:3.90.80.10 1 175 1.6E-70 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMD27_00880 36af1b394d78affadc9aefe718f8643b 178 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMD27_00880 36af1b394d78affadc9aefe718f8643b 178 SUPERFAMILY SSF50324 3 175 7.06E-67 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 SUPERFAMILY SSF52540 4 161 1.57E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 Pfam PF00196 Bacterial regulatory proteins, luxR family 769 823 7.0E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 Gene3D G3DSA:1.25.40.10 364 728 9.0E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 Gene3D G3DSA:1.10.10.10 760 829 5.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 ProSitePatterns PS00622 LuxR-type HTH domain signature. 783 810 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 769 783 9.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 783 799 9.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 799 811 9.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 SMART SM00421 766 823 6.5E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMD27_05700 ac658e08ef63f65e576d037b9ea9d135 829 SUPERFAMILY SSF46894 766 829 1.67E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 Gene3D G3DSA:1.20.1250.20 256 462 2.1E-16 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 SUPERFAMILY SSF103473 7 462 3.92E-65 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 Gene3D G3DSA:1.20.1720.10 16 211 7.2E-46 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 425 2.6E-77 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 206 224 4.4E-10 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 4.4E-10 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 4.4E-10 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 4.4E-10 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 4.4E-10 T 11-10-2018 AMD27_00830 06f204d78705dde39ec35b3420ae7b23 463 Pfam PF07690 Major Facilitator Superfamily 22 412 1.6E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 343 358 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Pfam PF01751 Toprim domain 3 132 6.0E-12 T 11-10-2018 IPR006171 TOPRIM domain AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Gene3D G3DSA:1.10.290.10 315 448 1.6E-109 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 SUPERFAMILY SSF56712 1 654 5.36E-122 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Gene3D G3DSA:2.70.20.10 214 524 1.6E-109 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 SMART SM00437 306 603 2.7E-39 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 SMART SM00436 124 220 2.1E-14 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Gene3D G3DSA:1.10.460.10 158 650 1.6E-109 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Gene3D G3DSA:3.40.50.140 1 152 1.4E-34 T 11-10-2018 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 190 208 2.3E-18 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 434 450 2.3E-18 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 2.3E-18 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 349 358 2.3E-18 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 555 569 2.3E-18 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 Pfam PF01131 DNA topoisomerase 151 641 2.7E-88 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_17795 d2cd7825f1dc3aa1aee3b3d543310e7e 951 SMART SM00493 1 124 5.3E-6 T 11-10-2018 IPR006171 TOPRIM domain AMD27_03155 9f1f0a983d15a7bc5c1f0b7d25d31f46 291 PIRSF PIRSF007580 1 279 3.4E-66 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_03155 9f1f0a983d15a7bc5c1f0b7d25d31f46 291 Pfam PF10118 Predicted metal-dependent hydrolase 15 260 9.4E-73 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_03155 9f1f0a983d15a7bc5c1f0b7d25d31f46 291 SUPERFAMILY SSF47240 8 212 7.38E-7 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 Pfam PF01476 LysM domain 137 179 3.6E-11 T 11-10-2018 IPR018392 LysM domain AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 Pfam PF01476 LysM domain 203 247 2.7E-8 T 11-10-2018 IPR018392 LysM domain AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 SUPERFAMILY SSF54106 136 179 1.7E-9 T 11-10-2018 AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 SMART SM00257 202 248 9.2E-9 T 11-10-2018 IPR018392 LysM domain AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 SMART SM00257 136 180 7.5E-11 T 11-10-2018 IPR018392 LysM domain AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 SUPERFAMILY SSF54106 202 247 5.62E-7 T 11-10-2018 AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 Gene3D G3DSA:3.10.350.10 128 191 9.7E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_13070 3afb1d62c8a433f51304808d88815a3c 480 Gene3D G3DSA:3.10.350.10 199 259 1.3E-11 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_07785 8dbcc155633cbd47a7999ee41d9cc7ee 83 Pfam PF02597 ThiS family 27 83 1.5E-6 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMD27_07785 8dbcc155633cbd47a7999ee41d9cc7ee 83 Gene3D G3DSA:3.10.20.30 1 83 2.2E-8 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_07785 8dbcc155633cbd47a7999ee41d9cc7ee 83 SUPERFAMILY SSF54285 6 83 3.92E-7 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMD27_16265 fce1e0bd50a1e395292e826eb07899d0 150 Pfam PF00816 H-NS histone family 27 123 1.3E-13 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AMD27_16265 fce1e0bd50a1e395292e826eb07899d0 150 Gene3D G3DSA:4.10.430.10 80 133 5.8E-13 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 AMD27_16265 fce1e0bd50a1e395292e826eb07899d0 150 SMART SM00528 84 129 4.8E-8 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AMD27_16265 fce1e0bd50a1e395292e826eb07899d0 150 SUPERFAMILY SSF81273 88 129 7.85E-10 T 11-10-2018 AMD27_05955 c5ada0120626d9bb1d5e9d9523c85cd4 144 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 29 140 1.4E-21 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMD27_05955 c5ada0120626d9bb1d5e9d9523c85cd4 144 SUPERFAMILY SSF54637 5 140 3.16E-35 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_05955 c5ada0120626d9bb1d5e9d9523c85cd4 144 Gene3D G3DSA:3.10.129.10 6 144 1.6E-36 T 11-10-2018 AMD27_05955 c5ada0120626d9bb1d5e9d9523c85cd4 144 Pfam PF03061 Thioesterase superfamily 56 132 1.2E-9 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 Gene3D G3DSA:3.30.1330.30 1 78 1.4E-22 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 SUPERFAMILY SSF75217 70 247 1.37E-46 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 6 80 3.4E-16 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 SMART SM00967 6 82 5.0E-15 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 SUPERFAMILY SSF55315 3 78 3.3E-16 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 Gene3D G3DSA:3.40.1280.10 81 247 6.6E-52 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 247 38.222 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 Pfam PF00588 SpoU rRNA Methylase family 99 240 1.3E-37 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMD27_01435 02fbeac78d16cb4f68f420e639eeaea0 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 246 1.7E-66 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 Pfam PF01266 FAD dependent oxidoreductase 3 405 4.2E-57 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 Gene3D G3DSA:3.50.50.60 4 51 4.9E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 SUPERFAMILY SSF51905 1 411 9.84E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 Gene3D G3DSA:3.50.50.60 104 408 2.3E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 Gene3D G3DSA:3.30.9.10 133 368 2.3E-38 T 11-10-2018 AMD27_09105 ee5b2ef7baaf0186883e9991e51bd33e 414 SUPERFAMILY SSF54373 277 369 2.22E-10 T 11-10-2018 AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 Pfam PF12796 Ankyrin repeats (3 copies) 47 139 9.0E-13 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 SMART SM00248 42 72 12.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 SMART SM00248 109 138 800.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 SMART SM00248 76 105 0.0043 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 SUPERFAMILY SSF48403 47 158 1.12E-24 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_15570 6d771c3ceca92bf06f61201ca5abcd3f 170 Gene3D G3DSA:1.25.40.20 17 163 9.0E-27 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 Gene3D G3DSA:3.20.20.70 143 299 3.4E-23 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 SUPERFAMILY SSF55811 3 126 4.6E-28 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 Pfam PF00293 NUDIX domain 7 124 1.4E-14 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 SUPERFAMILY SSF51391 185 298 1.44E-18 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 Gene3D G3DSA:3.90.79.10 5 131 2.5E-28 T 11-10-2018 AMD27_05235 839d13673ad9052bf6ae2dd1eb0dfe69 299 Pfam PF02581 Thiamine monophosphate synthase 165 298 3.3E-15 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_07415 f1f58e3b9d7fe64aab0ce01f99b9845f 372 Gene3D G3DSA:3.40.50.1820 32 362 1.1E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07415 f1f58e3b9d7fe64aab0ce01f99b9845f 372 Pfam PF00561 alpha/beta hydrolase fold 79 169 1.4E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07415 f1f58e3b9d7fe64aab0ce01f99b9845f 372 SUPERFAMILY SSF53474 47 356 1.44E-27 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Pfam PF01386 Ribosomal L25p family 9 98 2.7E-23 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Gene3D G3DSA:2.40.240.10 6 101 1.0E-29 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 10 177 8.4E-41 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 7 194 29.57 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Gene3D G3DSA:2.170.120.20 105 202 9.5E-23 T 11-10-2018 IPR037121 Ribosomal protein L25, C-terminal AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 7 101 24.414 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 20 100 1.0E-26 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 108 193 2.7E-26 T 11-10-2018 IPR020057 Ribosomal protein L25, beta domain AMD27_04470 54bbfa9892b6d5fbdf27dac8889e555f 214 SUPERFAMILY SSF50715 7 198 1.24E-50 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_10240 b85e81562055495cac177e9b90fa3607 672 SUPERFAMILY SSF53383 264 662 1.51E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_10240 b85e81562055495cac177e9b90fa3607 672 Gene3D G3DSA:3.90.1150.10 268 657 3.2E-164 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_10240 b85e81562055495cac177e9b90fa3607 672 Pfam PF00266 Aminotransferase class-V 285 654 3.2E-143 T 11-10-2018 IPR000192 Aminotransferase class V domain AMD27_10240 b85e81562055495cac177e9b90fa3607 672 Gene3D G3DSA:3.40.640.10 296 556 3.2E-164 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_10240 b85e81562055495cac177e9b90fa3607 672 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 267 663 8.2E-166 T 11-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 391 411 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 433 453 2.1E-27 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 Pfam PF00209 Sodium:neurotransmitter symporter family 123 480 6.5E-67 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 Pfam PF00209 Sodium:neurotransmitter symporter family 5 119 9.1E-41 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 29 43 - T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMD27_00145 6b87b93097dead48647b142b76b173ad 492 SUPERFAMILY SSF161070 5 485 1.44E-135 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 9 399 50.037 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 SUPERFAMILY SSF52440 5 114 1.58E-29 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 Pfam PF02222 ATP-grasp domain 125 303 1.1E-51 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 Gene3D G3DSA:3.40.50.20 3 124 1.7E-49 T 11-10-2018 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 15 399 5.5E-169 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 SUPERFAMILY SSF51246 328 398 4.08E-18 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 Gene3D G3DSA:3.30.470.20 199 402 1.5E-60 T 11-10-2018 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 SUPERFAMILY SSF56059 115 321 2.83E-54 T 11-10-2018 AMD27_09545 2bc0b948846c0da03e20235962a67da3 402 Gene3D G3DSA:3.30.1490.20 125 198 1.3E-30 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 Gene3D G3DSA:1.10.287.480 182 230 5.0E-17 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 SUPERFAMILY SSF118352 231 287 1.16E-14 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 SUPERFAMILY SSF64397 3 237 2.09E-59 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 Pfam PF01430 Hsp33 protein 5 278 2.5E-72 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 PIRSF PIRSF005261 1 289 3.5E-67 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 Gene3D G3DSA:3.90.1280.10 231 288 4.9E-17 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMD27_14450 64363efd435b6b421bd28fcc84cf349e 291 Gene3D G3DSA:3.55.30.10 1 175 4.1E-50 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 PIRSF PIRSF000124 1 389 1.3E-140 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 SUPERFAMILY SSF51735 1 194 1.55E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 378 5.4E-105 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 168 1.1E-33 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 Gene3D G3DSA:1.20.5.100 194 220 2.5E-20 T 11-10-2018 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 Gene3D G3DSA:3.40.50.720 222 388 8.6E-68 T 11-10-2018 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 1.2E-27 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 Gene3D G3DSA:3.40.50.720 1 193 2.9E-60 T 11-10-2018 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 PIRSF PIRSF500134 1 342 3.4E-125 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 PIRSF PIRSF500134 338 389 0.21 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 SMART SM00984 300 387 8.4E-13 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 SUPERFAMILY SSF48179 191 287 1.81E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_13015 0fa4e44e6b9aaf2bdf0687b8104c8fd0 389 SUPERFAMILY SSF52413 283 387 2.35E-26 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 Gene3D G3DSA:2.30.33.40 1 96 1.0E-35 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 SUPERFAMILY SSF50129 2 95 3.39E-33 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 95 26.201 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 SMART SM00883 3 94 7.1E-55 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 4 28 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 PRINTS PR00297 10kDa chaperonin signature 26 47 2.4E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.4E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 PRINTS PR00297 10kDa chaperonin signature 4 19 2.4E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 PRINTS PR00297 10kDa chaperonin signature 81 94 2.4E-32 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_11500 cd4abc0b9333f3aa11d12d253815a6ee 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 93 1.8E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 2.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.5E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.5E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 Pfam PF08362 YcdC-like protein, C-terminal region 60 203 1.4E-50 T 11-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 SUPERFAMILY SSF48498 77 203 1.25E-33 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 Gene3D G3DSA:1.10.357.10 60 203 1.4E-43 T 11-10-2018 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 Gene3D G3DSA:1.10.10.60 1 59 1.6E-19 T 11-10-2018 AMD27_15875 6db8e993b16e4eac3343b7463ada52ef 205 SUPERFAMILY SSF46689 4 80 3.99E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05930 651d4ef611e80d9c51b8ad7d742bd8b7 244 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 5 238 1.7E-94 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMD27_05930 651d4ef611e80d9c51b8ad7d742bd8b7 244 SUPERFAMILY SSF63892 3 239 7.19E-97 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMD27_05930 651d4ef611e80d9c51b8ad7d742bd8b7 244 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 242 126.113 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMD27_05930 651d4ef611e80d9c51b8ad7d742bd8b7 244 Gene3D G3DSA:3.20.20.70 1 243 1.7E-103 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05930 651d4ef611e80d9c51b8ad7d742bd8b7 244 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 5 237 1.5E-100 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMD27_04640 049e4922ae0fc42ee0d1624105fa9634 132 PIRSF PIRSF000178 2 131 1.8E-19 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04640 049e4922ae0fc42ee0d1624105fa9634 132 Gene3D G3DSA:1.20.1300.10 2 131 9.7E-33 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04640 049e4922ae0fc42ee0d1624105fa9634 132 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 129 1.8E-30 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04640 049e4922ae0fc42ee0d1624105fa9634 132 SUPERFAMILY SSF81343 7 130 1.92E-24 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04640 049e4922ae0fc42ee0d1624105fa9634 132 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 124 1.1E-23 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 1 302 1.6E-112 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 305 43.904 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 Gene3D G3DSA:1.10.1200.80 235 305 3.5E-13 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 Pfam PF01207 Dihydrouridine synthase (Dus) 1 299 4.5E-98 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 SUPERFAMILY SSF51395 1 302 1.28E-84 T 11-10-2018 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 78 96 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 Gene3D G3DSA:3.20.20.70 1 233 3.4E-73 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05985 d4c365dc6d77dcfd5e0cf3ce698214dc 324 PIRSF PIRSF006621 1 307 7.7E-98 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 Gene3D G3DSA:3.30.300.310 406 508 3.2E-28 T 11-10-2018 AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 493 8.2E-16 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 Pfam PF00501 AMP-binding enzyme 8 409 1.3E-88 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 SUPERFAMILY SSF56801 2 503 3.53E-130 T 11-10-2018 AMD27_05710 41ec8c88c91bba0f765feeb9927d9db8 511 Gene3D G3DSA:3.40.50.12780 1 405 1.0E-103 T 11-10-2018 AMD27_05575 2ff44d01c60dcf24d099e77767cad8a2 338 SUPERFAMILY SSF53850 26 335 4.56E-62 T 11-10-2018 AMD27_05575 2ff44d01c60dcf24d099e77767cad8a2 338 Gene3D G3DSA:3.40.190.10 27 306 5.5E-52 T 11-10-2018 AMD27_05575 2ff44d01c60dcf24d099e77767cad8a2 338 Pfam PF12849 PBP superfamily domain 19 305 6.8E-41 T 11-10-2018 IPR024370 PBP domain AMD27_05575 2ff44d01c60dcf24d099e77767cad8a2 338 Gene3D G3DSA:3.40.190.10 113 279 5.5E-52 T 11-10-2018 AMD27_13230 8f388561f4e33452bd8c370efcef9fc9 280 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 190 271 3.1E-6 T 11-10-2018 IPR001357 BRCT domain AMD27_13230 8f388561f4e33452bd8c370efcef9fc9 280 SUPERFAMILY SSF52113 192 276 2.06E-10 T 11-10-2018 IPR036420 BRCT domain superfamily AMD27_13230 8f388561f4e33452bd8c370efcef9fc9 280 Gene3D G3DSA:3.40.50.10190 187 279 3.0E-15 T 11-10-2018 IPR036420 BRCT domain superfamily AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 SMART SM00480 17 378 1.3E-117 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 3 122 2.1E-32 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 PIRSF PIRSF000804 1 382 3.4E-103 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 Gene3D G3DSA:3.10.150.10 3 258 7.5E-103 T 11-10-2018 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 SUPERFAMILY SSF55979 261 382 6.28E-33 T 11-10-2018 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 381 3.1E-92 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 Pfam PF02767 DNA polymerase III beta subunit, central domain 134 259 6.1E-28 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 SUPERFAMILY SSF55979 131 260 2.69E-18 T 11-10-2018 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 SUPERFAMILY SSF55979 3 120 1.48E-23 T 11-10-2018 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 Gene3D G3DSA:3.70.10.10 142 380 7.5E-103 T 11-10-2018 AMD27_00010 90614d8f6d8424858c63a8f4c99041b6 382 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 261 381 1.7E-33 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 Gene3D G3DSA:1.10.10.10 4 84 6.6E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 Pfam PF03466 LysR substrate binding domain 85 284 7.9E-30 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 Gene3D G3DSA:3.40.190.290 88 284 2.0E-31 T 11-10-2018 AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 SUPERFAMILY SSF53850 86 286 2.9E-34 T 11-10-2018 AMD27_09455 9e2906286ff8a22d29372509f6be4d58 293 SUPERFAMILY SSF46785 2 108 1.33E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 3.8E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 3.8E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 3.8E-37 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 SUPERFAMILY SSF110324 2 80 6.28E-33 T 11-10-2018 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 4.0E-18 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 7.5E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 Gene3D G3DSA:2.40.50.100 21 85 3.0E-30 T 11-10-2018 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 27.904 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04315 875cf07778df515615ef85e69e4e5d6f 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.8E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 SUPERFAMILY SSF51735 13 239 2.46E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.8E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 Gene3D G3DSA:3.40.50.720 7 250 7.9E-52 T 11-10-2018 AMD27_09310 509b260f328411ab5c65b41be8ea4948 250 Pfam PF00106 short chain dehydrogenase 13 203 5.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 Pfam PF00231 ATP synthase 3 288 6.0E-93 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 275 288 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 35.763 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 7.9E-104 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 SUPERFAMILY SSF52943 2 289 5.1E-92 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 Gene3D G3DSA:1.10.287.80 6 285 1.1E-101 T 11-10-2018 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 Gene3D G3DSA:3.40.1380.10 61 208 1.1E-101 T 11-10-2018 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 4.4E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 4.4E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 4.4E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00650 9a223600c6fd2056845afad2bb2311f2 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 4.4E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_08565 0953498490d83049972dbe4c6d285b68 107 Gene3D G3DSA:1.10.10.370 37 107 1.2E-17 T 11-10-2018 AMD27_08565 0953498490d83049972dbe4c6d285b68 107 SUPERFAMILY SSF69721 3 107 4.05E-28 T 11-10-2018 IPR025526 DsrC-like domain superfamily AMD27_08565 0953498490d83049972dbe4c6d285b68 107 Gene3D G3DSA:3.30.1420.10 2 34 1.8E-6 T 11-10-2018 AMD27_08565 0953498490d83049972dbe4c6d285b68 107 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 107 3.5E-26 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMD27_08565 0953498490d83049972dbe4c6d285b68 107 Pfam PF04358 DsrC like protein 5 107 8.5E-27 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMD27_08565 0953498490d83049972dbe4c6d285b68 107 PIRSF PIRSF006223 1 107 8.7E-21 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMD27_01350 0d25f8d5003c7e6bacd07a7bdba27f6c 207 Pfam PF08000 Bacterial PH domain 11 131 1.1E-31 T 11-10-2018 IPR012544 Bacterial Pleckstrin homology domain AMD27_01350 0d25f8d5003c7e6bacd07a7bdba27f6c 207 Gene3D G3DSA:1.10.287.210 116 207 1.6E-8 T 11-10-2018 AMD27_01350 0d25f8d5003c7e6bacd07a7bdba27f6c 207 Gene3D G3DSA:2.30.29.50 12 115 1.1E-43 T 11-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily AMD27_01350 0d25f8d5003c7e6bacd07a7bdba27f6c 207 SUPERFAMILY SSF50729 14 205 5.41E-51 T 11-10-2018 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.4E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.4E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.4E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.4E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Gene3D G3DSA:3.40.50.300 4 278 1.2E-151 T 11-10-2018 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 SUPERFAMILY SSF52540 3 301 2.23E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 9.2E-158 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Gene3D G3DSA:3.10.20.30 48 361 1.2E-151 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Pfam PF01926 50S ribosome-binding GTPase 5 123 1.2E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 6.8E-40 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Gene3D G3DSA:1.10.150.300 113 200 1.2E-151 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 PIRSF PIRSF006641 1 363 2.6E-155 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 SUPERFAMILY SSF81271 279 360 5.01E-37 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMD27_09525 cc6629d13027dd8d4cd57fb5bb7fe868 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.849 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 PIRSF PIRSF001237 1 344 4.7E-139 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 Hamap MF_00219 Dihydroorotase [pyrC]. 2 344 44.568 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 Pfam PF01979 Amidohydrolase family 11 310 2.0E-16 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 Gene3D G3DSA:3.20.20.140 2 343 2.8E-106 T 11-10-2018 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 3.6E-133 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11045 5d9746bfe563239bfc05af99da44a21c 344 SUPERFAMILY SSF51556 2 342 1.66E-140 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_17425 01e0303d9aceebadde4a638784ec7b6a 142 Pfam PF03869 Arc-like DNA binding domain 8 46 3.3E-9 T 11-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMD27_17425 01e0303d9aceebadde4a638784ec7b6a 142 SUPERFAMILY SSF47598 6 46 2.18E-10 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMD27_17425 01e0303d9aceebadde4a638784ec7b6a 142 Gene3D G3DSA:1.10.1220.10 4 50 1.6E-14 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMD27_17425 01e0303d9aceebadde4a638784ec7b6a 142 Gene3D G3DSA:1.10.260.40 81 139 2.7E-7 T 11-10-2018 AMD27_17425 01e0303d9aceebadde4a638784ec7b6a 142 SUPERFAMILY SSF47413 85 140 7.6E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SUPERFAMILY SSF50249 139 240 4.57E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SMART SM00316 631 714 8.2E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SUPERFAMILY SSF50249 72 148 7.79E-8 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 75 714 8.5E-192 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Pfam PF08206 Ribonuclease B OB domain 89 139 1.2E-7 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Hamap MF_01895 Ribonuclease R [rnr]. 40 714 49.678 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Gene3D G3DSA:2.40.50.140 69 154 9.3E-6 T 11-10-2018 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Pfam PF00575 S1 RNA binding domain 631 712 6.4E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SUPERFAMILY SSF50249 632 715 2.4E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Gene3D G3DSA:2.40.50.140 634 730 5.7E-20 T 11-10-2018 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 TIGRFAM TIGR02063 RNase_R: ribonuclease R 21 714 1.9E-228 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 Pfam PF00773 RNB domain 262 587 5.4E-106 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SMART SM00955 262 588 2.7E-171 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMD27_13895 483c8be36cfa3c3efbd8d1aabdb88e28 814 SUPERFAMILY SSF50249 230 631 1.43E-138 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_05855 1bfd79446e540f6a99cc7c333858d738 153 Gene3D G3DSA:3.10.129.10 2 139 8.9E-33 T 11-10-2018 AMD27_05855 1bfd79446e540f6a99cc7c333858d738 153 Pfam PF03061 Thioesterase superfamily 20 84 3.1E-8 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_05855 1bfd79446e540f6a99cc7c333858d738 153 SUPERFAMILY SSF54637 4 134 1.04E-37 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 Gene3D G3DSA:1.10.540.10 16 122 3.5E-16 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 242 374 2.9E-13 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 Gene3D G3DSA:1.20.140.10 224 398 2.0E-44 T 11-10-2018 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 32 121 9.9E-7 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 PIRSF PIRSF016578 4 390 2.0E-20 T 11-10-2018 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 10 400 7.7E-143 T 11-10-2018 IPR023922 Sulphate-starvation-induced SfnB AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 SUPERFAMILY SSF47203 238 398 2.58E-15 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 Gene3D G3DSA:2.40.110.10 125 223 3.6E-24 T 11-10-2018 AMD27_09495 09d7fce42a9bc8c32548e51c18e140c4 400 SUPERFAMILY SSF56645 25 219 4.84E-33 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 SUPERFAMILY SSF51735 164 448 1.97E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10865 717e8111a266a7f7890f881709c136c3 759 SUPERFAMILY SSF53659 426 751 4.52E-87 T 11-10-2018 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 SUPERFAMILY SSF53223 10 162 1.15E-52 T 11-10-2018 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Gene3D G3DSA:3.40.50.720 162 441 5.6E-80 T 11-10-2018 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Pfam PF03949 Malic enzyme, NAD binding domain 166 357 6.9E-22 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Gene3D G3DSA:3.40.50.10750 569 724 2.4E-90 T 11-10-2018 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Gene3D G3DSA:3.40.50.10380 1 161 1.3E-69 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 SMART SM00919 164 397 1.1E-125 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Pfam PF00390 Malic enzyme, N-terminal domain 21 113 4.1E-21 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Pfam PF00390 Malic enzyme, N-terminal domain 115 152 3.6E-6 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 PIRSF PIRSF036684 1 756 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Gene3D G3DSA:3.40.50.10950 442 748 2.4E-90 T 11-10-2018 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 426 748 5.9E-91 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMD27_10865 717e8111a266a7f7890f881709c136c3 759 SMART SM01274 19 152 1.5E-80 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMD27_09350 57e8b70290fc45689bc39fa86426b4cb 223 SUPERFAMILY SSF55073 68 222 1.02E-45 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_09350 57e8b70290fc45689bc39fa86426b4cb 223 Gene3D G3DSA:3.30.70.270 50 223 5.4E-52 T 11-10-2018 AMD27_09350 57e8b70290fc45689bc39fa86426b4cb 223 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 61 221 4.2E-50 T 11-10-2018 IPR000160 GGDEF domain AMD27_09350 57e8b70290fc45689bc39fa86426b4cb 223 Pfam PF00990 Diguanylate cyclase, GGDEF domain 65 219 2.5E-46 T 11-10-2018 IPR000160 GGDEF domain AMD27_09350 57e8b70290fc45689bc39fa86426b4cb 223 SMART SM00267 52 223 6.1E-56 T 11-10-2018 IPR000160 GGDEF domain AMD27_07995 9ea1b3714550dbc18c94b55cdf525219 315 Pfam PF13737 Transposase DDE domain 22 130 1.4E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_09015 9ea1b3714550dbc18c94b55cdf525219 315 Pfam PF13737 Transposase DDE domain 22 130 1.4E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_01530 4be4c996971d25a5a38e7a5e02ff4742 369 Gene3D G3DSA:3.10.310.50 99 238 9.1E-47 T 11-10-2018 AMD27_01530 4be4c996971d25a5a38e7a5e02ff4742 369 Pfam PF04536 TPM domain 110 233 3.7E-38 T 11-10-2018 IPR007621 TPM domain AMD27_12670 7bb04e6a36708782e4c0a1c3aa4f0b78 134 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.4E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_12670 7bb04e6a36708782e4c0a1c3aa4f0b78 134 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.4E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_12670 7bb04e6a36708782e4c0a1c3aa4f0b78 134 Gene3D G3DSA:3.90.79.10 2 126 1.2E-23 T 11-10-2018 AMD27_12670 7bb04e6a36708782e4c0a1c3aa4f0b78 134 SUPERFAMILY SSF55811 6 113 2.71E-23 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_12670 7bb04e6a36708782e4c0a1c3aa4f0b78 134 Pfam PF00293 NUDIX domain 10 111 3.5E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 397 1.7E-189 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 Gene3D G3DSA:3.40.50.1100 62 392 4.2E-184 T 11-10-2018 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 Gene3D G3DSA:3.40.50.1100 18 214 4.2E-184 T 11-10-2018 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 SUPERFAMILY SSF53686 11 396 1.57E-149 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 399 52.062 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 386 6.4E-48 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_12840 ff45eacaa1aa0bf6a4e92dfd3ec7b470 406 PIRSF PIRSF001413 2 405 1.8E-165 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Pfam PF00742 Homoserine dehydrogenase 136 314 5.9E-65 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 SUPERFAMILY SSF55021 351 421 6.74E-12 T 11-10-2018 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 182 204 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 PIRSF PIRSF000098 1 432 6.6E-159 T 11-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Gene3D G3DSA:3.40.50.720 4 339 3.7E-159 T 11-10-2018 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Gene3D G3DSA:3.30.70.260 348 420 3.7E-159 T 11-10-2018 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Pfam PF01842 ACT domain 353 418 2.4E-12 T 11-10-2018 IPR002912 ACT domain AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Gene3D G3DSA:3.30.360.10 135 347 3.7E-159 T 11-10-2018 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 128 4.9E-19 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 SUPERFAMILY SSF51735 2 157 7.14E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_01015 c7cff1fd84e24089187c5f876c02d5e2 434 SUPERFAMILY SSF55347 136 301 3.86E-53 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 339 352 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Pfam PF06506 Propionate catabolism activator 18 182 3.7E-49 T 11-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:1.10.10.60 561 638 8.0E-6 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 SUPERFAMILY SSF159800 2 178 4.18E-49 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:3.40.50.2300 4 176 6.5E-60 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 402 417 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 SMART SM00382 335 479 1.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:3.30.450.20 178 287 1.3E-10 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 6 637 2.7E-150 T 11-10-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005737|GO:0019629 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:1.10.8.60 487 555 1.1E-9 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 SUPERFAMILY SSF52540 314 552 1.21E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:3.40.50.300 302 486 8.4E-66 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Gene3D G3DSA:3.40.50.10660 73 160 6.5E-60 T 11-10-2018 AMD27_05660 54b943d9c544e67816e613ede1c96b8c 639 Pfam PF00158 Sigma-54 interaction domain 315 483 3.2E-68 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 SUPERFAMILY SSF55486 392 559 2.53E-12 T 11-10-2018 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Gene3D G3DSA:3.40.390.10 428 562 4.3E-7 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 464 526 1.4E-6 T 11-10-2018 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Gene3D G3DSA:2.60.120.1230 119 206 5.5E-11 T 11-10-2018 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Gene3D G3DSA:2.60.120.1230 207 299 8.0E-9 T 11-10-2018 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Gene3D G3DSA:2.60.120.1230 17 117 1.0E-12 T 11-10-2018 AMD27_07160 824a609ee0684d3e9df2233d3ef57948 589 Gene3D G3DSA:2.60.120.1230 300 394 2.2E-10 T 11-10-2018 AMD27_05810 2dbed94611af54f0905393feb94f233a 277 SUPERFAMILY SSF161098 14 264 6.64E-56 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_05810 2dbed94611af54f0905393feb94f233a 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 271 8.7E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_05810 2dbed94611af54f0905393feb94f233a 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 266 2.9E-95 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMD27_05810 2dbed94611af54f0905393feb94f233a 277 Gene3D G3DSA:1.10.3720.10 13 272 1.6E-68 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_05810 2dbed94611af54f0905393feb94f233a 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 7 269 1.4E-127 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF55666 146 235 1.33E-29 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Gene3D G3DSA:3.30.230.70 1 229 1.5E-75 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 5.5E-19 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF01138 3' exoribonuclease family, domain 1 18 145 3.9E-18 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Gene3D G3DSA:2.40.50.140 623 696 9.2E-28 T 11-10-2018 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF54791 558 642 4.93E-22 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF00013 KH domain 559 615 7.9E-12 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF54211 3 145 9.62E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Gene3D G3DSA:3.30.230.70 233 551 2.5E-111 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Gene3D G3DSA:3.30.1370.10 552 622 4.2E-19 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF50249 621 695 1.08E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF54211 295 490 8.6E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SMART SM00316 622 692 9.1E-26 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 243 322 6.0E-21 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SUPERFAMILY SSF55666 452 550 8.84E-29 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.774 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 1.3E-13 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF03725 3' exoribonuclease family, domain 2 461 530 9.2E-7 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 Pfam PF00575 S1 RNA binding domain 621 692 2.1E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 PIRSF PIRSF005499 3 699 4.8E-284 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMD27_14480 43d0ac7f229e5d0199c38e229d58999f 699 SMART SM00322 554 619 5.9E-13 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMD27_08550 30a28f5ed824a063af2d270934129885 122 SUPERFAMILY SSF75169 1 122 1.14E-30 T 11-10-2018 IPR027396 DsrEFH-like AMD27_08550 30a28f5ed824a063af2d270934129885 122 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 122 9.2E-36 T 11-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AMD27_08550 30a28f5ed824a063af2d270934129885 122 Gene3D G3DSA:3.40.1260.10 1 122 2.7E-36 T 11-10-2018 IPR027396 DsrEFH-like AMD27_08550 30a28f5ed824a063af2d270934129885 122 Pfam PF02635 DsrE/DsrF-like family 4 122 2.8E-22 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 ProSitePatterns PS00079 Multicopper oxidases signature 1. 562 582 - T 11-10-2018 IPR033138 Multicopper oxidases, conserved site AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 Pfam PF00394 Multicopper oxidase 159 318 4.0E-26 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 ProSitePatterns PS00080 Multicopper oxidases signature 2. 567 578 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 SUPERFAMILY SSF49503 23 174 1.09E-34 T 11-10-2018 IPR008972 Cupredoxin AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 Gene3D G3DSA:2.60.40.420 155 353 8.5E-37 T 11-10-2018 IPR008972 Cupredoxin AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 SUPERFAMILY SSF49503 445 584 2.9E-33 T 11-10-2018 IPR008972 Cupredoxin AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 Gene3D G3DSA:2.60.40.420 16 144 8.5E-36 T 11-10-2018 IPR008972 Cupredoxin AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 SUPERFAMILY SSF49503 156 358 1.22E-37 T 11-10-2018 IPR008972 Cupredoxin AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 26 584 3.3E-191 T 11-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 Pfam PF07731 Multicopper oxidase 476 585 3.7E-25 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMD27_10530 d3edbc1535052423927159aceb6e42d6 619 Pfam PF07732 Multicopper oxidase 36 146 4.8E-34 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 Gene3D G3DSA:2.30.110.10 5 218 2.5E-75 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 45 120 2.3E-22 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 3.9E-20 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 218 36.06 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 SUPERFAMILY SSF50475 22 218 2.48E-58 T 11-10-2018 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 7 218 1.7E-76 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_15255 207bc055fd51ad2dfaf8d1da0ba62427 218 PIRSF PIRSF000190 1 218 1.0E-73 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMD27_08650 4b20619990cc4ed485c182d848157703 147 Gene3D G3DSA:3.40.50.620 1 147 1.1E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_08650 4b20619990cc4ed485c182d848157703 147 PIRSF PIRSF006276 1 147 8.5E-22 T 11-10-2018 IPR006015 Universal stress protein A AMD27_08650 4b20619990cc4ed485c182d848157703 147 SUPERFAMILY SSF52402 1 146 2.34E-39 T 11-10-2018 AMD27_08650 4b20619990cc4ed485c182d848157703 147 Pfam PF00582 Universal stress protein family 3 146 7.1E-35 T 11-10-2018 IPR006016 UspA AMD27_08650 4b20619990cc4ed485c182d848157703 147 PRINTS PR01438 Universal stress protein signature 124 146 9.1E-20 T 11-10-2018 IPR006015 Universal stress protein A AMD27_08650 4b20619990cc4ed485c182d848157703 147 PRINTS PR01438 Universal stress protein signature 106 118 9.1E-20 T 11-10-2018 IPR006015 Universal stress protein A AMD27_08650 4b20619990cc4ed485c182d848157703 147 PRINTS PR01438 Universal stress protein signature 3 21 9.1E-20 T 11-10-2018 IPR006015 Universal stress protein A AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 Gene3D G3DSA:3.30.160.20 210 297 8.1E-95 T 11-10-2018 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.071 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 Pfam PF00472 RF-1 domain 213 321 9.9E-40 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 1.8E-160 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 Gene3D G3DSA:3.30.70.1660 112 342 8.1E-95 T 11-10-2018 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 SMART SM00937 63 178 6.5E-65 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 SUPERFAMILY SSF75620 12 353 7.19E-135 T 11-10-2018 AMD27_09860 4e3a0c930dbfd566847e86699b968a55 362 Pfam PF03462 PCRF domain 14 203 6.1E-72 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 SUPERFAMILY SSF52922 534 661 3.71E-38 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Gene3D G3DSA:3.40.50.970 329 539 4.7E-83 T 11-10-2018 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 SUPERFAMILY SSF52518 7 322 5.05E-119 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 SUPERFAMILY SSF52518 337 527 8.34E-67 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Pfam PF02779 Transketolase, pyrimidine binding domain 356 526 2.9E-46 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Pfam PF02780 Transketolase, C-terminal domain 553 653 3.3E-11 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 ProSitePatterns PS00802 Transketolase signature 2. 469 485 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 336 9.9E-163 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 SMART SM00861 357 527 2.2E-70 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Gene3D G3DSA:3.40.50.920 540 661 1.8E-37 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 660 7.5E-293 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMD27_09345 188bf5d35c56d8c62a0b3da133f83536 662 Gene3D G3DSA:3.40.50.970 6 328 6.4E-129 T 11-10-2018 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 PRINTS PR00095 Anthranilate synthase component I signature 388 402 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 PRINTS PR00095 Anthranilate synthase component I signature 294 307 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 PRINTS PR00095 Anthranilate synthase component I signature 403 417 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 PRINTS PR00095 Anthranilate synthase component I signature 308 321 2.3E-10 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 SUPERFAMILY SSF56322 43 455 6.02E-112 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 Pfam PF00425 chorismate binding enzyme 192 446 4.9E-93 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMD27_03350 de2f4055caa0b74d73836436f94e04cf 461 Gene3D G3DSA:3.60.120.10 34 456 1.0E-124 T 11-10-2018 IPR005801 ADC synthase GO:0009058 AMD27_11775 96c63afe2250e7df435af410fa25b422 426 Pfam PF13000 Acetyl-coenzyme A transporter 1 8 157 3.2E-20 T 11-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 AMD27_11775 96c63afe2250e7df435af410fa25b422 426 Gene3D G3DSA:1.20.1250.20 6 201 7.4E-9 T 11-10-2018 AMD27_11775 96c63afe2250e7df435af410fa25b422 426 Gene3D G3DSA:1.20.1250.20 221 424 1.5E-10 T 11-10-2018 AMD27_11775 96c63afe2250e7df435af410fa25b422 426 SUPERFAMILY SSF103473 7 423 1.18E-28 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 3.7E-139 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 SUPERFAMILY SSF46565 1 109 7.85E-37 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Pfam PF00226 DnaJ domain 5 67 5.0E-29 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 SMART SM00271 4 62 2.9E-34 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Gene3D G3DSA:2.10.230.10 150 213 2.8E-20 T 11-10-2018 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Gene3D G3DSA:1.10.287.110 1 115 5.1E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 SUPERFAMILY SSF49493 261 346 1.09E-22 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Gene3D G3DSA:2.60.260.20 257 368 2.5E-30 T 11-10-2018 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 SUPERFAMILY SSF57938 137 212 2.88E-21 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Pfam PF00684 DnaJ central domain 150 210 1.2E-13 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 SUPERFAMILY SSF49493 116 268 2.62E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 41.147 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 PRINTS PR00625 DnaJ domain signature 42 62 3.6E-33 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 PRINTS PR00625 DnaJ domain signature 25 40 3.6E-33 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 PRINTS PR00625 DnaJ domain signature 62 81 3.6E-33 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 PRINTS PR00625 DnaJ domain signature 7 25 3.6E-33 T 11-10-2018 IPR001623 DnaJ domain AMD27_00250 3af84a37ed3537a83921fb3420b2423b 373 Pfam PF01556 DnaJ C terminal domain 124 335 2.8E-42 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMD27_17755 f653ac66fe42a5b6f8948c5e49391223 388 Gene3D G3DSA:1.10.443.10 164 385 2.8E-28 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_17755 f653ac66fe42a5b6f8948c5e49391223 388 SUPERFAMILY SSF56349 180 373 1.59E-29 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_17755 f653ac66fe42a5b6f8948c5e49391223 388 Pfam PF00589 Phage integrase family 178 362 2.9E-19 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_17755 f653ac66fe42a5b6f8948c5e49391223 388 Gene3D G3DSA:1.10.150.130 28 152 2.5E-8 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_11985 cecf3c13782a8bc08467c06fe0b90304 328 Pfam PF01734 Patatin-like phospholipase 57 214 1.9E-26 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMD27_11985 cecf3c13782a8bc08467c06fe0b90304 328 SUPERFAMILY SSF52151 42 305 5.58E-55 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMD27_11985 cecf3c13782a8bc08467c06fe0b90304 328 Gene3D G3DSA:3.40.1090.10 38 152 6.3E-29 T 11-10-2018 AMD27_14410 03fa77745814e415ac484dfb9b819c42 85 Gene3D G3DSA:3.30.110.40 2 85 4.8E-25 T 11-10-2018 IPR036868 TusA-like domain superfamily AMD27_14410 03fa77745814e415ac484dfb9b819c42 85 Pfam PF01206 Sulfurtransferase TusA 12 84 1.6E-21 T 11-10-2018 IPR001455 TusA-like domain AMD27_14410 03fa77745814e415ac484dfb9b819c42 85 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 11-10-2018 IPR001455 TusA-like domain AMD27_14410 03fa77745814e415ac484dfb9b819c42 85 SUPERFAMILY SSF64307 5 85 2.35E-20 T 11-10-2018 IPR036868 TusA-like domain superfamily AMD27_13765 011e504b60ca9ea668fee6d2172dd671 86 Gene3D G3DSA:1.10.10.1130 1 77 2.9E-24 T 11-10-2018 AMD27_13765 011e504b60ca9ea668fee6d2172dd671 86 Pfam PF10982 Protein of unknown function (DUF2789) 2 73 7.8E-24 T 11-10-2018 IPR021250 Protein of unknown function DUF2789 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 SUPERFAMILY SSF47203 287 478 2.74E-45 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 9.2E-18 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 1.4E-8 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Gene3D G3DSA:1.20.140.10 288 464 1.6E-41 T 11-10-2018 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Gene3D G3DSA:2.40.110.10 161 287 3.8E-28 T 11-10-2018 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 457 4.8E-21 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 37 157 1.5E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 598 2.0E-31 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 Gene3D G3DSA:1.10.540.10 31 159 3.3E-20 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_14240 f366eea34f390baf5f64faea3d296ed2 607 SUPERFAMILY SSF56645 36 280 1.83E-61 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 6 643 6.6E-284 T 11-10-2018 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Gene3D G3DSA:3.90.199.10 31 524 5.4E-220 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 SUPERFAMILY SSF101904 536 642 4.19E-34 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Gene3D G3DSA:1.10.268.10 368 496 5.4E-220 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Gene3D G3DSA:2.120.10.90 700 951 3.2E-65 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Gene3D G3DSA:2.120.10.90 533 664 1.3E-39 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 780 813 8.3E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 541 588 2.4E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 856 901 8.0E-13 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 906 951 2.1E-11 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 640 6.4E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 732 775 1.9E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 953 23.197 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 SUPERFAMILY SSF101904 727 967 9.94E-58 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 SMART SM00434 9 502 2.9E-268 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 509 1.0E-152 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 SUPERFAMILY SSF56719 28 525 1.05E-173 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMD27_11095 104a9546542c84803c63417fa3ad18b3 996 Gene3D G3DSA:3.30.1360.40 234 331 5.4E-220 T 11-10-2018 AMD27_11245 ad470e1c7ebc556a3fe8c9e2d5780416 154 Pfam PF04345 Chorismate lyase 1 144 3.6E-20 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 AMD27_11245 ad470e1c7ebc556a3fe8c9e2d5780416 154 SUPERFAMILY SSF64288 3 149 6.2E-37 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMD27_11245 ad470e1c7ebc556a3fe8c9e2d5780416 154 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 1 149 20.084 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 AMD27_11245 ad470e1c7ebc556a3fe8c9e2d5780416 154 Gene3D G3DSA:3.40.1410.10 1 149 5.5E-33 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMD27_15015 3b3671570bbd718e7ffb55682aff97ea 263 Pfam PF00905 Penicillin binding protein transpeptidase domain 54 248 2.8E-27 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMD27_15015 3b3671570bbd718e7ffb55682aff97ea 263 SUPERFAMILY SSF56601 18 238 9.05E-30 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_15015 3b3671570bbd718e7ffb55682aff97ea 263 Gene3D G3DSA:3.40.710.10 11 259 8.1E-83 T 11-10-2018 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 507 43.556 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 SUPERFAMILY SSF55681 164 505 1.26E-113 T 11-10-2018 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 389 405 4.6E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 246 259 4.6E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 201 211 4.6E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 217 233 4.6E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 264 281 4.6E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 Pfam PF00152 tRNA synthetases class II (D, K and N) 165 504 6.8E-79 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 Gene3D G3DSA:2.40.50.140 8 160 3.7E-34 T 11-10-2018 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 20 506 3.7E-199 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 Gene3D G3DSA:3.30.930.10 161 508 4.8E-127 T 11-10-2018 AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 SUPERFAMILY SSF50249 15 157 9.14E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_04190 5c7b75c3e96998387e6cd3caefabebda 508 Pfam PF01336 OB-fold nucleic acid binding domain 75 148 2.3E-10 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 1 302 48.596 T 11-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 Gene3D G3DSA:3.20.20.70 1 234 3.1E-71 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 Pfam PF01207 Dihydrouridine synthase (Dus) 1 299 8.0E-67 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 Gene3D G3DSA:1.20.225.30 237 303 1.0E-8 T 11-10-2018 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 85 103 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 PIRSF PIRSF006621 1 303 5.5E-73 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_12640 b93f31d57e1f3a0ae413c60bd561c539 303 SUPERFAMILY SSF51395 1 299 8.42E-65 T 11-10-2018 AMD27_06695 b3ff5860fa71ef409cebadf6b516a009 517 SUPERFAMILY SSF56059 65 505 9.22E-53 T 11-10-2018 AMD27_06695 b3ff5860fa71ef409cebadf6b516a009 517 PIRSF PIRSF005522 36 517 3.2E-210 T 11-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 AMD27_06695 b3ff5860fa71ef409cebadf6b516a009 517 Gene3D G3DSA:3.30.1490.270 386 446 9.7E-25 T 11-10-2018 AMD27_06695 b3ff5860fa71ef409cebadf6b516a009 517 Gene3D G3DSA:3.40.50.11290 251 349 5.2E-36 T 11-10-2018 AMD27_06695 b3ff5860fa71ef409cebadf6b516a009 517 Pfam PF14403 Circularly permuted ATP-grasp type 2 116 490 6.9E-147 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 Hamap MF_00163 Peptide deformylase [def]. 2 158 21.997 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 PRINTS PR01576 Peptide deformylase signature 112 130 2.5E-29 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 PRINTS PR01576 Peptide deformylase signature 36 65 2.5E-29 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 PRINTS PR01576 Peptide deformylase signature 131 158 2.5E-29 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 PRINTS PR01576 Peptide deformylase signature 100 111 2.5E-29 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 Gene3D G3DSA:3.90.45.10 1 158 4.4E-49 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 PIRSF PIRSF004749 1 158 3.4E-45 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 SUPERFAMILY SSF56420 2 158 7.07E-50 T 11-10-2018 IPR036821 Peptide deformylase superfamily AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 Pfam PF01327 Polypeptide deformylase 4 158 5.7E-41 T 11-10-2018 IPR023635 Peptide deformylase AMD27_04060 68f9f3d5865253f120ecedf2e7484ee2 158 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 14 158 6.8E-37 T 11-10-2018 IPR023635 Peptide deformylase AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Pfam PF00817 impB/mucB/samB family 13 160 6.7E-32 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 SUPERFAMILY SSF56672 9 248 5.6E-60 T 11-10-2018 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Gene3D G3DSA:1.10.150.20 180 240 1.1E-7 T 11-10-2018 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Gene3D G3DSA:3.30.70.270 12 164 3.1E-36 T 11-10-2018 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Gene3D G3DSA:2.30.40.20 18 81 3.1E-36 T 11-10-2018 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Pfam PF13438 Domain of unknown function (DUF4113) 382 431 2.8E-16 T 11-10-2018 IPR025188 Domain of unknown function DUF4113 AMD27_08585 5937068c97c3289b2aff339475ba60b0 442 Pfam PF11799 impB/mucB/samB family C-terminal domain 254 363 7.3E-5 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMD27_16135 7ab92e37006bdcd6804e7fea7e69be7d 83 Pfam PF04226 Transglycosylase associated protein 34 80 6.7E-15 T 11-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 Gene3D G3DSA:2.40.30.170 44 279 4.2E-71 T 11-10-2018 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 SUPERFAMILY SSF111369 49 213 2.48E-18 T 11-10-2018 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 262 3.6E-17 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 Gene3D G3DSA:2.40.50.100 58 204 4.2E-71 T 11-10-2018 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 352 5.1E-66 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 Gene3D G3DSA:1.10.287.470 92 157 4.2E-71 T 11-10-2018 AMD27_00235 ac09994dc5804fad4c2118bc9a9f9b74 366 Gene3D G3DSA:2.40.420.20 280 350 4.2E-71 T 11-10-2018 AMD27_11805 64f2bd42d343037f9f0ce0143c0b87e0 302 Gene3D G3DSA:1.10.600.10 6 299 9.1E-86 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMD27_11805 64f2bd42d343037f9f0ce0143c0b87e0 302 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMD27_11805 64f2bd42d343037f9f0ce0143c0b87e0 302 SUPERFAMILY SSF48576 10 297 1.93E-77 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMD27_11805 64f2bd42d343037f9f0ce0143c0b87e0 302 Pfam PF00348 Polyprenyl synthetase 36 273 3.8E-55 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMD27_15965 cebcb10b487129918674209b64b48a52 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 17 489 1.0E-209 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD27_15965 cebcb10b487129918674209b64b48a52 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 66 489 7.1E-190 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.294 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 Gene3D G3DSA:1.10.287.310 1 63 5.2E-22 T 11-10-2018 AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 3.3E-18 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 Pfam PF00831 Ribosomal L29 protein 4 60 1.7E-19 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14040 a34eb2accd5249024a0948d1d847dcc6 65 SUPERFAMILY SSF46561 1 61 1.57E-18 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 Pfam PF00297 Ribosomal protein L3 66 185 1.4E-15 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 Gene3D G3DSA:2.40.30.10 132 212 3.5E-13 T 11-10-2018 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 207 3.1E-86 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 Gene3D G3DSA:2.40.50.620 34 93 4.6E-14 T 11-10-2018 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.806 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site AMD27_14080 86c42c4249a45e67583481ff7681b4d6 212 SUPERFAMILY SSF50447 2 211 4.59E-78 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_07840 7810d8e40d68e44bd8199f963cd7f9bc 409 Pfam PF03594 Benzoate membrane transport protein 10 386 2.8E-156 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMD27_07840 7810d8e40d68e44bd8199f963cd7f9bc 409 TIGRFAM TIGR00843 benE: benzoate transporter 1 388 6.2E-183 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 271 17.505 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Gene3D G3DSA:3.40.50.620 1 198 1.1E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 1 167 1.2E-46 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 SUPERFAMILY SSF56037 295 397 2.59E-12 T 11-10-2018 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 332 374 1.2E-12 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 SUPERFAMILY SSF82829 201 282 1.44E-17 T 11-10-2018 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Gene3D G3DSA:1.20.59.20 199 282 1.0E-14 T 11-10-2018 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Pfam PF11734 TilS substrate C-terminal domain 332 381 1.4E-5 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 SUPERFAMILY SSF52402 1 197 1.06E-45 T 11-10-2018 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Pfam PF01171 PP-loop family 1 164 3.1E-45 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 Pfam PF09179 TilS substrate binding domain 212 279 1.9E-10 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_02815 46ec89441a9b45d367be1512f2f9e201 410 SMART SM00977 332 406 5.4E-4 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMD27_17595 07433c4586bb33345c1844bad6dd53b2 330 SUPERFAMILY SSF81901 71 191 5.1E-19 T 11-10-2018 AMD27_17595 07433c4586bb33345c1844bad6dd53b2 330 Gene3D G3DSA:1.25.40.10 57 312 2.8E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_17595 07433c4586bb33345c1844bad6dd53b2 330 SMART SM00671 128 163 4.6E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_17595 07433c4586bb33345c1844bad6dd53b2 330 SMART SM00671 91 127 13.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_03995 3bc0262921f41304cefd07722031a555 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMD27_03995 3bc0262921f41304cefd07722031a555 488 SUPERFAMILY SSF53720 3 479 2.62E-157 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_03995 3bc0262921f41304cefd07722031a555 488 Gene3D G3DSA:3.40.309.10 252 445 1.3E-166 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_03995 3bc0262921f41304cefd07722031a555 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMD27_03995 3bc0262921f41304cefd07722031a555 488 Pfam PF00171 Aldehyde dehydrogenase family 13 475 6.7E-169 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_03995 3bc0262921f41304cefd07722031a555 488 Gene3D G3DSA:3.40.605.10 7 473 1.3E-166 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 SUPERFAMILY SSF52029 184 376 4.78E-84 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 Gene3D G3DSA:3.50.7.10 173 379 3.4E-241 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.8E-254 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 Gene3D G3DSA:1.10.560.10 8 521 3.4E-241 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 SUPERFAMILY SSF48592 7 521 7.56E-79 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 6.5E-96 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.234 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 Gene3D G3DSA:3.30.260.10 138 410 3.4E-241 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 SUPERFAMILY SSF54849 137 205 3.89E-22 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_11495 9ba339eb21967dedc54bf6a1e29aaf33 544 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 24.974 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 SUPERFAMILY SSF64263 1 119 9.16E-49 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 Gene3D G3DSA:3.90.1030.10 1 117 1.2E-44 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 Pfam PF01196 Ribosomal protein L17 20 116 1.6E-32 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13950 27deac725a572354f79a6ad342e76c01 121 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 2.0E-45 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PIRSF PIRSF000350 1 469 1.2E-85 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 Gene3D G3DSA:3.50.50.60 162 283 8.5E-115 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 Gene3D G3DSA:3.50.50.60 5 340 8.5E-115 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 320 6.7E-34 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 6.7E-34 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.7E-34 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 6.7E-34 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 6.7E-34 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 SUPERFAMILY SSF55424 348 471 7.04E-38 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 Gene3D G3DSA:3.30.390.30 352 477 1.1E-42 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 333 5.1E-68 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 45 55 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 44 59 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 313 320 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 455 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 4.4E-70 T 11-10-2018 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 461 8.3E-35 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 SUPERFAMILY SSF51905 1 343 1.54E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04670 1c081ef464b2ac71b069d36c6c173ef7 477 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 470 1.1E-157 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMD27_12950 beae120106233dd34bcab96d37dab071 705 Pfam PF00593 TonB dependent receptor 406 702 7.6E-34 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_12950 beae120106233dd34bcab96d37dab071 705 Gene3D G3DSA:2.40.170.20 159 705 2.3E-58 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_12950 beae120106233dd34bcab96d37dab071 705 SUPERFAMILY SSF56935 30 705 1.07E-83 T 11-10-2018 AMD27_12950 beae120106233dd34bcab96d37dab071 705 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 688 705 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site AMD27_12950 beae120106233dd34bcab96d37dab071 705 Gene3D G3DSA:2.170.130.10 39 157 9.9E-24 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_12950 beae120106233dd34bcab96d37dab071 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 146 5.2E-10 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 103 121 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 20 323 5.4E-137 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 Pfam PF01207 Dihydrouridine synthase (Dus) 24 320 6.8E-84 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 15 338 48.597 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 SUPERFAMILY SSF51395 21 327 3.66E-68 T 11-10-2018 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 Gene3D G3DSA:3.20.20.70 19 258 3.8E-71 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 Gene3D G3DSA:1.20.120.1460 261 337 1.1E-16 T 11-10-2018 AMD27_02495 48c513aab73dc6f2f8d2f969d85ce842 357 PIRSF PIRSF006621 10 341 2.3E-75 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 Pfam PF02934 GatB/GatE catalytic domain 19 302 3.7E-109 T 11-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 SUPERFAMILY SSF55931 18 309 7.19E-116 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 SMART SM00845 341 491 4.9E-78 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 Pfam PF02637 GatB domain 347 491 3.6E-51 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 158 172 - T 11-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 Gene3D G3DSA:1.10.10.410 432 492 3.1E-25 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 Gene3D G3DSA:1.10.150.380 310 430 4.1E-33 T 11-10-2018 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 SUPERFAMILY SSF89095 310 417 2.62E-31 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 16 492 37.683 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMD27_11895 8cac5c4e670d6ce55ff9518f643b5c34 492 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 17 491 2.0E-167 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 Pfam PF00486 Transcriptional regulatory protein, C terminal 172 248 1.3E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 SMART SM00448 21 132 1.7E-43 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 SUPERFAMILY SSF46894 149 250 7.94E-27 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 SUPERFAMILY SSF52172 22 142 1.02E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 Gene3D G3DSA:1.10.10.10 146 254 3.4E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 SMART SM00862 172 248 7.8E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 Pfam PF00072 Response regulator receiver domain 23 133 2.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_14750 f1ebf73c46e50afa02b5b09664f7f2c8 254 Gene3D G3DSA:3.40.50.2300 7 141 2.8E-40 T 11-10-2018 AMD27_00220 d41a6834a01bdcf995ee27cc17ece37d 167 Gene3D G3DSA:3.30.70.270 3 167 4.2E-51 T 11-10-2018 AMD27_00220 d41a6834a01bdcf995ee27cc17ece37d 167 SMART SM00267 3 167 1.0E-44 T 11-10-2018 IPR000160 GGDEF domain AMD27_00220 d41a6834a01bdcf995ee27cc17ece37d 167 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 7 165 7.1E-47 T 11-10-2018 IPR000160 GGDEF domain AMD27_00220 d41a6834a01bdcf995ee27cc17ece37d 167 SUPERFAMILY SSF55073 11 166 7.14E-45 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_00220 d41a6834a01bdcf995ee27cc17ece37d 167 Pfam PF00990 Diguanylate cyclase, GGDEF domain 7 163 1.2E-43 T 11-10-2018 IPR000160 GGDEF domain AMD27_02980 31ab53b3821bf205fd0c191c860f4967 144 Pfam PF04386 Stringent starvation protein B 11 132 2.8E-35 T 11-10-2018 IPR007481 Stringent starvation protein B AMD27_02980 31ab53b3821bf205fd0c191c860f4967 144 Gene3D G3DSA:2.30.30.220 4 131 3.8E-50 T 11-10-2018 IPR036760 SspB-like superfamily AMD27_02980 31ab53b3821bf205fd0c191c860f4967 144 SUPERFAMILY SSF101738 7 117 4.45E-45 T 11-10-2018 IPR036760 SspB-like superfamily AMD27_02980 31ab53b3821bf205fd0c191c860f4967 144 PIRSF PIRSF005276 5 144 3.1E-51 T 11-10-2018 IPR007481 Stringent starvation protein B AMD27_08410 f08cbba38a3c9642cad4c6cc35e66f3f 420 Pfam PF02601 Exonuclease VII, large subunit 139 411 5.1E-48 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMD27_08410 f08cbba38a3c9642cad4c6cc35e66f3f 420 Pfam PF13742 OB-fold nucleic acid binding domain 6 113 1.6E-15 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMD27_08410 f08cbba38a3c9642cad4c6cc35e66f3f 420 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 414 1.6E-71 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 Gene3D G3DSA:3.30.479.30 48 180 5.0E-38 T 11-10-2018 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 Pfam PF01145 SPFH domain / Band 7 family 24 194 1.3E-34 T 11-10-2018 IPR001107 Band 7 domain AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 SUPERFAMILY SSF117892 51 185 1.96E-37 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 SMART SM00244 20 178 1.3E-53 T 11-10-2018 IPR001107 Band 7 domain AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 110 127 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 154 172 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 130 153 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 27 49 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 75 96 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_11795 5f1053cff18a1a3561b7c75afe7a1252 284 PRINTS PR00721 Stomatin signature 173 194 7.2E-25 T 11-10-2018 IPR001972 Stomatin family GO:0016020 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 1.1E-18 T 11-10-2018 IPR022569 Ferredoxin, C-terminal AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 4.5E-18 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 4.5E-18 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 4.5E-18 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 SUPERFAMILY SSF54862 1 95 4.19E-25 T 11-10-2018 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 Gene3D G3DSA:3.30.70.20 2 102 8.7E-33 T 11-10-2018 AMD27_06170 01fcc9a82e1233ca5530c7d782aec84f 107 Pfam PF00037 4Fe-4S binding domain 34 55 5.6E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMD27_09865 8e3c47284f601feeaae1d1e76722f16d 141 Pfam PF05433 Glycine zipper 2TM domain 80 120 1.4E-5 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 SUPERFAMILY SSF51419 8 235 8.43E-59 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 Gene3D G3DSA:3.20.20.10 10 218 5.9E-132 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 SMART SM01005 234 357 6.0E-57 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 Hamap MF_01201 Alanine racemase. 1 357 32.151 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 Gene3D G3DSA:2.40.37.10 8 351 5.9E-132 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 Pfam PF00842 Alanine racemase, C-terminal domain 234 354 1.2E-39 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 TIGRFAM TIGR00492 alr: alanine racemase 2 355 1.5E-102 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 220 2.0E-57 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 123 135 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 155 166 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 250 265 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 267 282 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 26 42 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 288 305 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 193 220 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 339 352 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 PRINTS PR00992 Alanine racemase signature 60 78 5.2E-64 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_06720 f0b1eb5eba00523be762f0ad5587c761 357 SUPERFAMILY SSF50621 228 355 9.07E-45 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 Gene3D G3DSA:3.30.70.20 84 182 2.4E-15 T 11-10-2018 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 SUPERFAMILY SSF54862 10 140 1.09E-23 T 11-10-2018 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 155 1.8E-55 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 Gene3D G3DSA:3.20.20.20 6 70 4.4E-6 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 Pfam PF14697 4Fe-4S dicluster domain 84 137 1.0E-15 T 11-10-2018 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 Pfam PF04060 Putative Fe-S cluster 15 47 1.4E-9 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 AMD27_04730 52b8cec1aa2daf4da58f818173736a35 267 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 121 132 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 ProSitePatterns PS00449 ATP synthase a subunit signature. 227 236 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 Gene3D G3DSA:1.20.120.220 102 291 4.5E-59 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 45 286 5.2E-42 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 Pfam PF00119 ATP synthase A chain 55 285 5.0E-56 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 291 15.752 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00625 98dd832dfb1cf108df1f05dbf8ff305a 291 SUPERFAMILY SSF81336 103 285 5.1E-43 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 656 8.9E-160 T 11-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Pfam PF00263 Bacterial type II and III secretion system protein 484 647 1.6E-48 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Pfam PF03958 Bacterial type II/III secretion system short domain 129 185 2.6E-7 T 11-10-2018 IPR005644 NolW-like AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Pfam PF03958 Bacterial type II/III secretion system short domain 268 389 5.6E-14 T 11-10-2018 IPR005644 NolW-like AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Pfam PF03958 Bacterial type II/III secretion system short domain 193 261 1.7E-12 T 11-10-2018 IPR005644 NolW-like AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Gene3D G3DSA:3.30.1370.120 191 258 5.3E-15 T 11-10-2018 IPR038591 NolW-like superfamily AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 389 399 2.2E-33 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 612 630 2.2E-33 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 635 649 2.2E-33 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 515 525 2.2E-33 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 480 504 2.2E-33 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_01160 30b92094a44d58c12021a77e31bcbd7a 758 Gene3D G3DSA:3.30.1370.120 25 186 1.6E-51 T 11-10-2018 IPR038591 NolW-like superfamily AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 SUPERFAMILY SSF118215 6 404 8.24E-111 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 Gene3D G3DSA:1.10.3860.10 1 417 1.7E-118 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 Pfam PF00375 Sodium:dicarboxylate symporter family 6 403 9.1E-106 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 4.5E-38 T 11-10-2018 AMD27_05885 ae5ba5087007310c7a1b45d0e4426238 430 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 4.5E-38 T 11-10-2018 AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 3.4E-28 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 71 4.5E-38 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 SMART SM00316 5 73 1.7E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 Gene3D G3DSA:2.40.50.140 2 71 2.9E-37 T 11-10-2018 AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 SUPERFAMILY SSF50249 4 71 5.3E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_02030 cc62a8e88f5338df4a1bf9e80919769e 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 26.966 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 10 228 8.8E-83 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 Gene3D G3DSA:3.10.20.30 1 105 9.8E-35 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 Gene3D G3DSA:1.10.1060.10 106 235 8.8E-56 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 7.4E-9 T 11-10-2018 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 SUPERFAMILY SSF54292 4 105 5.18E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 SUPERFAMILY SSF46548 106 233 5.76E-38 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMD27_04655 0783a6d3475d7d06312d5c672ce9c138 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 7.6E-30 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_00200 2ef3b2e73ea55db45098228a0319bca3 95 SMART SM00830 13 92 1.9E-17 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_00200 2ef3b2e73ea55db45098228a0319bca3 95 Pfam PF01817 Chorismate mutase type II 13 89 2.3E-15 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_00200 2ef3b2e73ea55db45098228a0319bca3 95 SUPERFAMILY SSF48600 3 91 8.55E-21 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_00200 2ef3b2e73ea55db45098228a0319bca3 95 Gene3D G3DSA:1.20.59.10 1 95 5.7E-30 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMD27_12780 17e14605760de9b4024f28738a0bfa74 456 Pfam PF00860 Permease family 30 420 2.7E-99 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMD27_12780 17e14605760de9b4024f28738a0bfa74 456 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 368 388 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMD27_12780 17e14605760de9b4024f28738a0bfa74 456 TIGRFAM TIGR03173 pbuX: xanthine permease 33 452 3.1E-128 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 AMD27_12780 17e14605760de9b4024f28738a0bfa74 456 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 26 450 2.5E-124 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 5.3E-44 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 SUPERFAMILY SSF52440 2 114 2.73E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 323 9.1E-75 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 SUPERFAMILY SSF56059 84 349 1.17E-65 T 11-10-2018 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 5.7E-30 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 SMART SM00878 337 443 9.2E-45 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 SUPERFAMILY SSF51230 569 645 5.63E-19 T 11-10-2018 IPR011053 Single hybrid motif AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 595 624 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Gene3D G3DSA:3.30.470.130 1 449 7.2E-193 T 11-10-2018 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 SUPERFAMILY SSF51246 332 447 3.35E-35 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Pfam PF00364 Biotin-requiring enzyme 578 642 7.2E-15 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_02950 a233caff41e8ef62d0528b21a157b7c1 646 Gene3D G3DSA:2.40.50.100 570 643 1.7E-20 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 SUPERFAMILY SSF52283 8 460 2.49E-109 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 SMART SM00997 197 372 4.9E-83 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 SMART SM00996 10 459 6.5E-276 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Gene3D G3DSA:3.40.50.1480 1 148 2.2E-69 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 82 96 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 6 452 44.914 T 11-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 219 235 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 SUPERFAMILY SSF51735 197 373 1.62E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 11 452 3.0E-155 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 PIRSF PIRSF001109 1 460 2.3E-178 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Gene3D G3DSA:3.40.50.1480 149 203 1.8E-19 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Gene3D G3DSA:3.40.50.1480 370 460 5.3E-32 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 197 372 4.2E-57 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Gene3D G3DSA:3.40.50.720 204 369 4.5E-67 T 11-10-2018 AMD27_10845 82c9a2337bb2567d213b242a506a0dda 460 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 10 147 9.0E-73 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMD27_12085 2919262132af720f4d2c1a0077348ada 166 Pfam PF03734 L,D-transpeptidase catalytic domain 10 159 4.6E-14 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMD27_12085 2919262132af720f4d2c1a0077348ada 166 Gene3D G3DSA:2.40.440.10 3 166 6.9E-21 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_12085 2919262132af720f4d2c1a0077348ada 166 SUPERFAMILY SSF141523 6 159 9.16E-20 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_06375 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_03860 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_09010 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_02355 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_05630 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_15235 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_03290 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_02425 d8117124a9c9977634bf2992a1323d0c 156 Pfam PF13359 DDE superfamily endonuclease 10 137 4.8E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_12025 282c8aa0a52af00a109a53a8fad2487e 186 Pfam PF14317 YcxB-like protein 108 177 4.6E-19 T 11-10-2018 IPR025588 YcxB-like protein AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 14 222 7.5E-70 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 SUPERFAMILY SSF55120 13 239 2.19E-74 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 245 299 1.1E-8 T 11-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 187 236 5.4E-7 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 35 183 3.2E-56 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 13 299 17.971 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_01710 0edeeca41b33860436f5d236137c8b3a 301 Gene3D G3DSA:3.30.2350.10 4 244 1.4E-83 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 379 46.648 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 Pfam PF00117 Glutamine amidotransferase class-I 196 373 1.3E-46 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 3.4E-39 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 318 3.4E-39 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 3.4E-39 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 3.4E-39 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 3.4E-39 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 135 3.4E-51 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 SUPERFAMILY SSF52021 4 143 2.09E-55 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 376 5.5E-142 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 Gene3D G3DSA:3.50.30.20 3 154 1.2E-58 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 SUPERFAMILY SSF52317 157 376 2.75E-59 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 SMART SM01097 3 136 2.7E-90 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 350 363 4.8E-11 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 4.8E-11 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 4.8E-11 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.5E-5 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00097 Anthranilate synthase component II signature 265 276 1.5E-5 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 PRINTS PR00097 Anthranilate synthase component II signature 350 363 1.5E-5 T 11-10-2018 AMD27_11605 64c9a2249ead23464c4bc144d2cfda48 380 Gene3D G3DSA:3.40.50.880 155 378 2.0E-71 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_02810 831989c227f518005df6bf4c87eec096 274 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 101 6.5E-43 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 SUPERFAMILY SSF52096 9 266 1.71E-81 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02810 831989c227f518005df6bf4c87eec096 274 Gene3D G3DSA:3.90.226.10 1 267 1.5E-92 T 11-10-2018 AMD27_02810 831989c227f518005df6bf4c87eec096 274 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 268 37.96 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 66 84 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 106 119 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 122 135 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 41 52 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 103 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 150 159 6.5E-39 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_02810 831989c227f518005df6bf4c87eec096 274 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 7 267 1.4E-111 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_05540 773a540a0fe020b4d48f3e3da0fb170e 231 Gene3D G3DSA:1.10.10.60 25 77 9.9E-17 T 11-10-2018 AMD27_05540 773a540a0fe020b4d48f3e3da0fb170e 231 Gene3D G3DSA:1.10.357.10 78 230 1.1E-27 T 11-10-2018 AMD27_05540 773a540a0fe020b4d48f3e3da0fb170e 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 87 6.6E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_05540 773a540a0fe020b4d48f3e3da0fb170e 231 SUPERFAMILY SSF46689 27 101 2.23E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_13480 fe531c31992bf51c840e6443a5e6a621 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 2.0E-31 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMD27_13480 fe531c31992bf51c840e6443a5e6a621 66 SUPERFAMILY SSF140319 3 64 1.31E-26 T 11-10-2018 IPR036762 IscX-like superfamily AMD27_13480 fe531c31992bf51c840e6443a5e6a621 66 PIRSF PIRSF039003 3 66 1.4E-34 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMD27_13480 fe531c31992bf51c840e6443a5e6a621 66 Gene3D G3DSA:1.10.10.600 1 66 6.5E-28 T 11-10-2018 IPR036762 IscX-like superfamily AMD27_13480 fe531c31992bf51c840e6443a5e6a621 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 2.2E-31 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 Gene3D G3DSA:3.40.50.9100 1 150 7.9E-67 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 PIRSF PIRSF001399 1 148 1.3E-62 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 Pfam PF01220 Dehydroquinase class II 5 140 3.7E-62 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 143 2.5E-62 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 71.405 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 141 1.0E-66 T 11-10-2018 AMD27_08590 f2466d9890a06dfa8ca1bba2d519eb67 151 SUPERFAMILY SSF52304 4 146 9.55E-62 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMD27_00890 fd020bb1cd7e06a7eddfbed9c84847a6 255 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 33 251 1.9E-18 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMD27_00890 fd020bb1cd7e06a7eddfbed9c84847a6 255 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 6 255 8.1E-25 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMD27_07940 f2c3ffd179970f2980252840096186ba 186 Gene3D G3DSA:2.40.128.20 21 185 2.0E-47 T 11-10-2018 IPR012674 Calycin AMD27_07940 f2c3ffd179970f2980252840096186ba 186 ProSitePatterns PS00213 Lipocalin signature. 39 50 - T 11-10-2018 IPR022272 Lipocalin family conserved site AMD27_07940 f2c3ffd179970f2980252840096186ba 186 PRINTS PR01171 Bacterial lipocalin signature 146 157 2.9E-7 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_07940 f2c3ffd179970f2980252840096186ba 186 PRINTS PR01171 Bacterial lipocalin signature 173 183 2.9E-7 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_07940 f2c3ffd179970f2980252840096186ba 186 PRINTS PR01171 Bacterial lipocalin signature 131 139 2.9E-7 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_07940 f2c3ffd179970f2980252840096186ba 186 PRINTS PR01171 Bacterial lipocalin signature 38 52 2.9E-7 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_07940 f2c3ffd179970f2980252840096186ba 186 PIRSF PIRSF036893 5 186 1.7E-56 T 11-10-2018 IPR022271 Lipocalin, ApoD type AMD27_07940 f2c3ffd179970f2980252840096186ba 186 Pfam PF08212 Lipocalin-like domain 38 184 1.3E-49 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain AMD27_07940 f2c3ffd179970f2980252840096186ba 186 SUPERFAMILY SSF50814 29 184 8.73E-41 T 11-10-2018 IPR012674 Calycin AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 Gene3D G3DSA:3.40.50.720 5 257 5.9E-101 T 11-10-2018 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 SUPERFAMILY SSF53223 2 121 2.97E-37 T 11-10-2018 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 6.3E-38 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 281 34.806 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 2.8E-62 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 Gene3D G3DSA:3.40.50.10860 7 275 5.9E-101 T 11-10-2018 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 SUPERFAMILY SSF51735 126 278 2.29E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 280 1.0E-60 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_11535 3eb3d56a509209d7b2a82f4a0790d30f 282 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 258 266 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMD27_03580 f00e551b3c1ede56a77752be025e3561 90 SUPERFAMILY SSF55229 38 89 2.48E-11 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMD27_03580 f00e551b3c1ede56a77752be025e3561 90 Pfam PF03776 Septum formation topological specificity factor MinE 17 87 8.2E-19 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMD27_03580 f00e551b3c1ede56a77752be025e3561 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 10 88 4.7E-20 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMD27_03580 f00e551b3c1ede56a77752be025e3561 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 4 90 15.136 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMD27_03580 f00e551b3c1ede56a77752be025e3561 90 Gene3D G3DSA:3.30.1070.10 21 88 8.2E-20 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 SUPERFAMILY SSF54631 55 191 7.45E-33 T 11-10-2018 AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 Pfam PF03471 Transporter associated domain 205 277 1.4E-14 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 SMART SM01091 201 279 8.5E-12 T 11-10-2018 IPR005170 Transporter-associated domain AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 SMART SM00116 131 179 5.6 T 11-10-2018 IPR000644 CBS domain AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 SMART SM00116 67 117 0.0038 T 11-10-2018 IPR000644 CBS domain AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 Gene3D G3DSA:3.30.465.10 201 278 2.9E-18 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 Gene3D G3DSA:3.10.580.10 39 190 6.7E-52 T 11-10-2018 AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 SUPERFAMILY SSF56176 205 278 7.63E-14 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 Pfam PF00571 CBS domain 125 179 1.2E-6 T 11-10-2018 IPR000644 CBS domain AMD27_14415 55b2d77e73099b138a11ac613a12ec70 279 Pfam PF00571 CBS domain 59 117 1.5E-6 T 11-10-2018 IPR000644 CBS domain AMD27_08950 934e1af7d59952a26328974720503539 430 Pfam PF00083 Sugar (and other) transporter 20 215 4.4E-24 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_08950 934e1af7d59952a26328974720503539 430 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_08950 934e1af7d59952a26328974720503539 430 Gene3D G3DSA:1.20.1250.20 13 429 1.5E-70 T 11-10-2018 AMD27_08950 934e1af7d59952a26328974720503539 430 Pfam PF07690 Major Facilitator Superfamily 252 424 1.6E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_08950 934e1af7d59952a26328974720503539 430 SUPERFAMILY SSF103473 15 426 2.88E-68 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 203 35.052 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 203 2.9E-70 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 PIRSF PIRSF000495 2 205 8.7E-72 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 Gene3D G3DSA:3.40.50.880 1 205 1.1E-76 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 SUPERFAMILY SSF52317 2 203 4.59E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_14795 21773e0d15222ec73d5a85ad2886a295 205 Pfam PF00117 Glutamine amidotransferase class-I 6 200 1.1E-21 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_13555 794069f4539be0545a4a976957da781c 659 SUPERFAMILY SSF52540 8 230 1.04E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13555 794069f4539be0545a4a976957da781c 659 Pfam PF12704 MacB-like periplasmic core domain 281 499 1.6E-39 T 11-10-2018 IPR025857 MacB-like periplasmic core domain AMD27_13555 794069f4539be0545a4a976957da781c 659 SMART SM00382 37 224 3.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_13555 794069f4539be0545a4a976957da781c 659 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_13555 794069f4539be0545a4a976957da781c 659 Pfam PF00005 ABC transporter 28 176 1.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_13555 794069f4539be0545a4a976957da781c 659 Gene3D G3DSA:3.40.50.300 6 269 1.8E-66 T 11-10-2018 AMD27_13555 794069f4539be0545a4a976957da781c 659 Pfam PF02687 FtsX-like permease family 563 652 2.5E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMD27_17780 80fc2e326bb3744ed59c1b62fc027f73 1076 Pfam PF07916 TraG-like protein, N-terminal region 4 498 4.4E-40 T 11-10-2018 IPR012931 TraG-like, N-terminal AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SMART SM00487 602 792 2.4E-30 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.40.50.300 544 783 2.2E-226 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 36 1108 26.946 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Pfam PF00270 DEAD/DEAH box helicase 610 766 8.5E-19 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SMART SM00982 1010 1110 3.1E-44 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF52540 8 346 2.3E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF143517 997 1148 7.85E-41 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:2.30.30.840 485 543 2.2E-226 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF52540 353 467 2.48E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.40.50.300 480 991 2.2E-226 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF52540 784 992 3.43E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF52540 525 785 7.75E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.40.50.11180 27 338 4.9E-99 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.90.1150.50 1006 1151 8.5E-42 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SUPERFAMILY SSF141259 473 550 4.45E-21 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.40.50.11140 360 455 7.5E-9 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Pfam PF03461 TRCF domain 1011 1101 1.3E-26 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1084 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Gene3D G3DSA:3.30.2060.10 128 213 4.9E-99 T 11-10-2018 AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Pfam PF00271 Helicase conserved C-terminal domain 807 911 2.9E-18 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 Pfam PF02559 CarD-like/TRCF domain 483 575 9.3E-21 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SMART SM01058 481 578 5.1E-43 T 11-10-2018 IPR003711 CarD-like/TRCF domain AMD27_08785 77116bb2175faa151b33f2eca3f1291b 1153 SMART SM00490 828 912 6.4E-19 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.8E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.3E-65 T 11-10-2018 AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.4E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 8.0E-5 T 11-10-2018 AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 Gene3D G3DSA:3.40.50.720 1 244 1.7E-82 T 11-10-2018 AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 SUPERFAMILY SSF51735 5 243 4.77E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_12475 3ce71ac7084fe1b7c8355fc9faa319ac 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 3.9E-95 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 Gene3D G3DSA:2.40.30.20 101 204 2.7E-34 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 PIRSF PIRSF000498 1 212 9.1E-76 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 Pfam PF00677 Lumazine binding domain 99 183 1.5E-23 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 Pfam PF00677 Lumazine binding domain 3 86 6.8E-21 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 Gene3D G3DSA:2.40.30.20 1 88 2.7E-26 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 6.8E-63 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 SUPERFAMILY SSF63380 1 88 3.06E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_00935 c0cfe090cc8d24a3401cc300c161b3ec 219 SUPERFAMILY SSF63380 92 193 6.21E-31 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 Pfam PF02357 Transcription termination factor nusG 2 107 6.0E-28 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 SMART SM00739 122 149 0.0085 T 11-10-2018 IPR005824 KOW AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 SUPERFAMILY SSF82679 1 112 8.37E-38 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 176 22.715 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 1.0E-15 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 1.0E-15 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 1.0E-15 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 Gene3D G3DSA:3.30.70.940 1 117 3.9E-46 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 175 8.1E-63 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 SUPERFAMILY SSF50104 120 175 4.59E-15 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 SMART SM00738 1 110 1.7E-44 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMD27_01215 07ae8f0a185a4e5feaba6fc0a6803d66 177 Gene3D G3DSA:2.30.30.30 118 175 1.2E-19 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMD27_06275 b01a754fe14b3ba13f73de08dbdc802d 352 Pfam PF09588 YqaJ-like viral recombinase domain 45 186 7.0E-35 T 11-10-2018 IPR019080 YqaJ viral recombinase AMD27_06275 b01a754fe14b3ba13f73de08dbdc802d 352 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 40 196 3.7E-39 T 11-10-2018 IPR017482 Putative phage-type endonuclease AMD27_06275 b01a754fe14b3ba13f73de08dbdc802d 352 SUPERFAMILY SSF52980 43 228 2.68E-30 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_06275 b01a754fe14b3ba13f73de08dbdc802d 352 Gene3D G3DSA:3.90.320.10 43 242 6.5E-37 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 10 424 40.682 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 370 394 0.0031 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 277 312 1.5E-9 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 200 225 0.0026 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 241 261 5.2E-5 T 11-10-2018 IPR011659 WD40-like Beta Propeller AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 SUPERFAMILY SSF52964 39 157 2.48E-27 T 11-10-2018 AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Gene3D G3DSA:2.120.10.30 161 427 4.9E-78 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 SUPERFAMILY SSF69304 153 426 1.2E-49 T 11-10-2018 AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 20 424 5.8E-148 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Gene3D G3DSA:3.40.50.10070 25 160 1.1E-32 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 AMD27_10620 a8c85e1b93e39fc4aa5b46152f33f04b 427 Pfam PF04052 TolB amino-terminal domain 30 124 5.1E-19 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMD27_16190 119581e34794b79bfa6198539be9e857 417 Gene3D G3DSA:1.25.40.10 142 306 3.2E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16190 119581e34794b79bfa6198539be9e857 417 SUPERFAMILY SSF48452 201 303 2.66E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16190 119581e34794b79bfa6198539be9e857 417 SUPERFAMILY SSF53448 1 99 8.44E-18 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_16190 119581e34794b79bfa6198539be9e857 417 Gene3D G3DSA:3.90.550.10 3 139 1.6E-13 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_16190 119581e34794b79bfa6198539be9e857 417 Pfam PF00535 Glycosyl transferase family 2 8 105 2.9E-11 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMD27_00530 de56fe8acbe69617f25105ad2b62bad6 298 SUPERFAMILY SSF103481 35 137 4.32E-15 T 11-10-2018 AMD27_00530 de56fe8acbe69617f25105ad2b62bad6 298 Pfam PF00892 EamA-like transporter family 3 134 7.8E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_00530 de56fe8acbe69617f25105ad2b62bad6 298 Pfam PF00892 EamA-like transporter family 148 284 7.5E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_00530 de56fe8acbe69617f25105ad2b62bad6 298 SUPERFAMILY SSF103481 191 288 2.35E-9 T 11-10-2018 AMD27_15070 695a75035d99487f5c5d1218e96eac8e 244 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 10 182 5.3E-71 T 11-10-2018 IPR019912 FMN reductase, MsuE-like AMD27_15070 695a75035d99487f5c5d1218e96eac8e 244 Pfam PF03358 NADPH-dependent FMN reductase 10 154 1.1E-29 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMD27_15070 695a75035d99487f5c5d1218e96eac8e 244 Gene3D G3DSA:3.40.50.360 2 182 1.0E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_15070 695a75035d99487f5c5d1218e96eac8e 244 SUPERFAMILY SSF52218 7 180 1.16E-28 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 1 353 33.158 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 1 134 2.0E-41 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 Gene3D G3DSA:3.40.50.2000 157 338 1.8E-109 T 11-10-2018 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 SUPERFAMILY SSF53756 1 352 1.01E-113 T 11-10-2018 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 349 2.0E-102 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 345 5.0E-39 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMD27_15330 1d467b77f2a5763dd2d35eb87af311f6 353 Gene3D G3DSA:3.40.50.2000 2 344 1.8E-109 T 11-10-2018 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 Pfam PF00512 His Kinase A (phospho-acceptor) domain 315 379 3.7E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 473 6.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 487 6.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 512 6.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 532 6.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 Gene3D G3DSA:3.30.565.10 385 540 1.1E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SMART SM00304 261 313 1.9E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 Gene3D G3DSA:1.10.287.130 265 379 2.5E-25 T 11-10-2018 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SUPERFAMILY SSF47384 297 379 6.28E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SUPERFAMILY SSF55874 368 533 3.93E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SMART SM00387 423 535 3.4E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SUPERFAMILY SSF158472 265 312 2.62E-7 T 11-10-2018 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 SMART SM00388 314 379 8.1E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_12385 9ff642c197f9092decbeba15acda3006 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 532 2.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_11635 c0b21fc6b7dd9ae56436b7869f359ed3 97 Pfam PF01527 Transposase 3 77 4.1E-13 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMD27_11635 c0b21fc6b7dd9ae56436b7869f359ed3 97 SUPERFAMILY SSF46689 2 89 8.96E-22 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_11635 c0b21fc6b7dd9ae56436b7869f359ed3 97 Gene3D G3DSA:1.10.10.60 6 85 9.4E-13 T 11-10-2018 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 SUPERFAMILY SSF52374 9 333 3.57E-78 T 11-10-2018 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 Gene3D G3DSA:1.10.240.10 188 302 5.8E-102 T 11-10-2018 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 Pfam PF00579 tRNA synthetases class I (W and Y) 7 288 9.3E-56 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 7 333 1.7E-70 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 Gene3D G3DSA:3.40.50.620 10 329 5.8E-102 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 71 90 2.6E-22 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 149 170 2.6E-22 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 2.6E-22 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMD27_11680 dea74c50738ba06d17ba361df09eb7e5 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 201 211 2.6E-22 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMD27_11840 f7e17197d0e0de4fb5ce22edb2a765cd 392 Gene3D G3DSA:2.40.160.60 32 392 5.8E-32 T 11-10-2018 AMD27_11840 f7e17197d0e0de4fb5ce22edb2a765cd 392 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 56 370 9.5E-15 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD27_11840 f7e17197d0e0de4fb5ce22edb2a765cd 392 SUPERFAMILY SSF56935 23 392 2.69E-47 T 11-10-2018 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 TIGRFAM TIGR00492 alr: alanine racemase 3 367 1.7E-102 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 Gene3D G3DSA:3.20.20.10 11 225 5.0E-107 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 Gene3D G3DSA:2.40.37.10 9 366 5.0E-107 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 Pfam PF00842 Alanine racemase, C-terminal domain 243 366 8.6E-40 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 SUPERFAMILY SSF50621 235 367 7.32E-43 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 Hamap MF_01201 Alanine racemase. 2 371 31.462 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 61 79 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 296 313 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 275 290 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 353 366 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 200 227 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 160 171 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 27 43 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 126 138 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 PRINTS PR00992 Alanine racemase signature 258 273 8.1E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 SMART SM01005 242 371 1.0E-59 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 SUPERFAMILY SSF51419 9 243 8.83E-55 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_03485 f0f64bd9fbac6007a92c7de7ddd953c7 374 Pfam PF01168 Alanine racemase, N-terminal domain 9 227 1.3E-58 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_00050 affc0b69ba9b95de973203c52f9f2acd 375 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 373 3.9E-133 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMD27_00050 affc0b69ba9b95de973203c52f9f2acd 375 Gene3D G3DSA:3.30.420.40 140 335 3.7E-123 T 11-10-2018 AMD27_00050 affc0b69ba9b95de973203c52f9f2acd 375 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 375 39.557 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMD27_00050 affc0b69ba9b95de973203c52f9f2acd 375 SUPERFAMILY SSF53067 4 321 4.21E-23 T 11-10-2018 AMD27_00050 affc0b69ba9b95de973203c52f9f2acd 375 Gene3D G3DSA:3.30.420.40 11 370 3.7E-123 T 11-10-2018 AMD27_15790 eed9b8750d8a8404f76a937aae1eb24b 176 Gene3D G3DSA:2.70.70.10 16 176 4.9E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_15790 eed9b8750d8a8404f76a937aae1eb24b 176 SUPERFAMILY SSF51261 48 175 1.05E-32 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_15790 eed9b8750d8a8404f76a937aae1eb24b 176 Pfam PF01551 Peptidase family M23 70 163 5.3E-23 T 11-10-2018 IPR016047 Peptidase M23 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 5 566 69.909 T 11-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 SMART SM01274 82 262 4.4E-104 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 268 284 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 409 425 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 148 177 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 184 206 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 243 261 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 88 112 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PRINTS PR00072 Malic enzyme signature 299 315 2.7E-73 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 Gene3D G3DSA:3.40.50.720 270 565 7.4E-107 T 11-10-2018 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 Pfam PF03949 Malic enzyme, NAD binding domain 272 531 2.0E-100 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 SUPERFAMILY SSF53223 5 271 3.53E-109 T 11-10-2018 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 SUPERFAMILY SSF51735 272 563 6.24E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 PIRSF PIRSF000106 2 564 5.8E-225 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 Gene3D G3DSA:3.40.50.10380 17 269 1.6E-114 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 ProSitePatterns PS00331 Malic enzymes signature. 268 284 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 Pfam PF00390 Malic enzyme, N-terminal domain 82 262 7.4E-77 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMD27_00555 8397c67984e88eba025d18fcde8e877e 566 SMART SM00919 272 532 5.4E-127 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 77 1.0E-32 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 81 25.056 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 ProSitePatterns PS00056 Ribosomal protein S17 signature. 57 69 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 2.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 2.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 2.4E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 Gene3D G3DSA:2.40.50.140 2 84 4.3E-36 T 11-10-2018 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 Pfam PF00366 Ribosomal protein S17 11 78 8.7E-32 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 SUPERFAMILY SSF50249 7 83 3.0E-32 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14035 0b03c97b880b7ac269a1f1048e892070 85 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 77 2.7E-36 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_11575 74db0ba03ee478e80343da868c697d25 576 SMART SM00327 215 391 1.3E-29 T 11-10-2018 IPR002035 von Willebrand factor, type A AMD27_11575 74db0ba03ee478e80343da868c697d25 576 SUPERFAMILY SSF53300 213 391 1.05E-36 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMD27_11575 74db0ba03ee478e80343da868c697d25 576 Pfam PF12450 von Willebrand factor 108 200 7.5E-35 T 11-10-2018 IPR022156 Uncharacterised protein YfbK, N-terminal AMD27_11575 74db0ba03ee478e80343da868c697d25 576 Pfam PF12034 Domain of unknown function (DUF3520) 393 572 1.7E-67 T 11-10-2018 IPR021908 Protein of unknown function DUF3520 AMD27_11575 74db0ba03ee478e80343da868c697d25 576 Gene3D G3DSA:3.40.50.410 216 394 3.0E-33 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMD27_11575 74db0ba03ee478e80343da868c697d25 576 Pfam PF00092 von Willebrand factor type A domain 217 388 1.4E-20 T 11-10-2018 IPR002035 von Willebrand factor, type A AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 Gene3D G3DSA:3.30.470.20 89 289 4.2E-79 T 11-10-2018 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 PIRSF PIRSF039102 5 51 1.2E-7 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 PIRSF PIRSF039102 42 309 4.9E-79 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 8 304 33.944 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 Pfam PF07478 D-ala D-ala ligase C-terminus 107 300 1.5E-52 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 Gene3D G3DSA:3.40.50.20 1 87 3.1E-33 T 11-10-2018 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 9 303 3.4E-98 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 Pfam PF01820 D-ala D-ala ligase N-terminus 9 88 7.7E-17 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 SUPERFAMILY SSF52440 9 99 3.84E-26 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 SUPERFAMILY SSF56059 99 305 1.11E-54 T 11-10-2018 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 246 274 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15320 28bed577d4349c71c348afca9c0c3157 309 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_03060 80907940dbb86082289a244470694d4a 213 Pfam PF03006 Haemolysin-III related 12 205 1.6E-35 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMD27_03060 80907940dbb86082289a244470694d4a 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 13 212 5.5E-60 T 11-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 AMD27_06580 fa0b51007b08ac974a431ed43ba8c30a 215 Gene3D G3DSA:1.20.1440.100 23 94 2.5E-30 T 11-10-2018 AMD27_06580 fa0b51007b08ac974a431ed43ba8c30a 215 Gene3D G3DSA:3.40.50.1000 11 211 2.5E-30 T 11-10-2018 IPR023214 HAD superfamily AMD27_06580 fa0b51007b08ac974a431ed43ba8c30a 215 Pfam PF12710 haloacid dehalogenase-like hydrolase 12 190 4.0E-23 T 11-10-2018 AMD27_06580 fa0b51007b08ac974a431ed43ba8c30a 215 SUPERFAMILY SSF56784 8 208 3.56E-20 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_06580 fa0b51007b08ac974a431ed43ba8c30a 215 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 11 193 4.1E-23 T 11-10-2018 AMD27_00275 9530d0a9546d2455367d0d9cdf52d887 205 Pfam PF01323 DSBA-like thioredoxin domain 89 187 4.8E-17 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_00275 9530d0a9546d2455367d0d9cdf52d887 205 Gene3D G3DSA:3.40.30.10 24 205 3.8E-52 T 11-10-2018 AMD27_00275 9530d0a9546d2455367d0d9cdf52d887 205 SUPERFAMILY SSF52833 23 199 3.83E-42 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_00275 9530d0a9546d2455367d0d9cdf52d887 205 PIRSF PIRSF001488 1 205 2.1E-51 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AMD27_00500 12a8a19119eba9ac1150f8ce352926ba 306 SUPERFAMILY SSF52980 165 281 1.88E-18 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_00500 12a8a19119eba9ac1150f8ce352926ba 306 Gene3D G3DSA:3.40.91.100 142 297 6.0E-6 T 11-10-2018 AMD27_00500 12a8a19119eba9ac1150f8ce352926ba 306 Pfam PF04471 Restriction endonuclease 163 278 4.5E-37 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AMD27_00500 12a8a19119eba9ac1150f8ce352926ba 306 Pfam PF14338 Mrr N-terminal domain 6 87 3.8E-19 T 11-10-2018 IPR025745 Restriction system protein Mrr-like N-terminal domain AMD27_11475 1e68f40d35c1daa1ac6b69d02ae27d21 125 Gene3D G3DSA:1.10.3830.10 8 125 1.3E-34 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AMD27_11475 1e68f40d35c1daa1ac6b69d02ae27d21 125 Pfam PF01219 Prokaryotic diacylglycerol kinase 22 122 1.3E-30 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AMD27_14365 c1795e2261f92f3a0da5d24c9cc4a8b6 214 Gene3D G3DSA:3.60.15.10 2 211 5.6E-74 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_14365 c1795e2261f92f3a0da5d24c9cc4a8b6 214 SMART SM00849 13 193 2.1E-40 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_14365 c1795e2261f92f3a0da5d24c9cc4a8b6 214 SUPERFAMILY SSF56281 3 210 1.18E-55 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_14365 c1795e2261f92f3a0da5d24c9cc4a8b6 214 Pfam PF00753 Metallo-beta-lactamase superfamily 11 193 1.0E-28 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_00930 817ac99c2e88df57a2e25dc8ea94ffd7 432 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 264 270 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_00930 817ac99c2e88df57a2e25dc8ea94ffd7 432 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 29 292 4.5E-26 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_00930 817ac99c2e88df57a2e25dc8ea94ffd7 432 SUPERFAMILY SSF53335 24 359 2.22E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Pfam PF05524 PEP-utilising enzyme, N-terminal 183 305 8.5E-22 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Gene3D G3DSA:3.50.30.10 186 411 1.9E-58 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 SMART SM00065 21 168 1.2E-22 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 SUPERFAMILY SSF52009 304 423 8.11E-27 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Gene3D G3DSA:3.20.20.60 412 752 5.1E-105 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 431 718 8.2E-95 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Gene3D G3DSA:1.10.274.10 201 325 1.9E-58 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 SUPERFAMILY SSF51621 432 726 1.39E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 SUPERFAMILY SSF47831 209 320 3.01E-26 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 2.3E-23 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 2.3E-23 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 2.3E-23 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 2.3E-23 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Gene3D G3DSA:3.30.450.40 2 168 1.2E-48 T 11-10-2018 IPR029016 GAF-like domain superfamily AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 SUPERFAMILY SSF55781 4 162 4.14E-33 T 11-10-2018 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Pfam PF13185 GAF domain 21 158 8.1E-14 T 11-10-2018 IPR003018 GAF domain GO:0005515 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 Pfam PF00391 PEP-utilising enzyme, mobile domain 331 403 1.3E-16 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMD27_01955 464e2d367d090419139b5a3d54b5b6aa 764 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 184 736 1.8E-127 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMD27_00410 1da7db2ade36af50ca8f82d4cc119f5a 233 Gene3D G3DSA:3.90.550.10 1 231 3.9E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00410 1da7db2ade36af50ca8f82d4cc119f5a 233 SUPERFAMILY SSF53448 1 212 6.19E-47 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00410 1da7db2ade36af50ca8f82d4cc119f5a 233 Pfam PF00535 Glycosyl transferase family 2 3 161 2.1E-23 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMD27_06645 21a6ffaa3791b2c3f38c3dca1af89c9a 257 Pfam PF14237 Domain of unknown function (DUF4339) 4 46 1.5E-15 T 11-10-2018 IPR025640 Domain of unknown function DUF4339 Reactome: R-HSA-6798695 AMD27_06645 21a6ffaa3791b2c3f38c3dca1af89c9a 257 Pfam PF06271 RDD family 92 249 6.8E-22 T 11-10-2018 IPR010432 RDD AMD27_04435 92896941e36e9e8a0e149df2908b9baa 174 SUPERFAMILY SSF101327 4 172 7.19E-22 T 11-10-2018 IPR036255 YgfB-like superfamily AMD27_04435 92896941e36e9e8a0e149df2908b9baa 174 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 6 169 4.9E-19 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMD27_04435 92896941e36e9e8a0e149df2908b9baa 174 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 170 3.1E-19 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMD27_04435 92896941e36e9e8a0e149df2908b9baa 174 Gene3D G3DSA:1.20.120.740 6 163 2.6E-6 T 11-10-2018 AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 Pfam PF03861 ANTAR domain 132 183 7.1E-15 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 SUPERFAMILY SSF52172 1 183 8.25E-42 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 SMART SM00448 4 112 0.008 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 Pfam PF00072 Response regulator receiver domain 6 112 9.2E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 Gene3D G3DSA:3.40.50.2300 1 129 1.2E-11 T 11-10-2018 AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 PIRSF PIRSF036382 1 190 2.0E-47 T 11-10-2018 IPR008327 Signal transduction response regulator, antiterminator AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 Gene3D G3DSA:1.10.10.10 130 189 6.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07750 0702b8dea891f63f64faaf0f1435d397 195 SMART SM01012 128 183 4.5E-18 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 8.2E-74 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 618 635 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Pfam PF00364 Biotin-requiring enzyme 596 660 2.6E-15 T 11-10-2018 IPR000089 Biotin/lipoyl attachment AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 SUPERFAMILY SSF56059 83 347 2.19E-65 T 11-10-2018 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 3.5E-36 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Gene3D G3DSA:3.30.470.130 1 450 3.9E-195 T 11-10-2018 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Gene3D G3DSA:2.40.50.100 586 664 6.0E-23 T 11-10-2018 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 SUPERFAMILY SSF51230 583 661 4.97E-20 T 11-10-2018 IPR011053 Single hybrid motif AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 SMART SM00878 336 443 2.0E-48 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.8E-46 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 SUPERFAMILY SSF51246 331 449 1.41E-37 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_07615 2985a3bc3528f2e8bdb948f0cce6059e 668 SUPERFAMILY SSF52440 1 113 6.33E-50 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SUPERFAMILY SSF50447 271 411 7.29E-36 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 702 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SMART SM00838 610 698 2.2E-56 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SUPERFAMILY SSF54980 409 486 4.32E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SMART SM00889 487 608 1.8E-62 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 111.274 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Gene3D G3DSA:3.30.230.10 491 697 1.0E-85 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SUPERFAMILY SSF52540 6 288 1.21E-104 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SUPERFAMILY SSF54980 613 702 1.58E-29 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 SUPERFAMILY SSF54211 489 609 3.54E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Gene3D G3DSA:3.30.70.240 614 685 1.0E-85 T 11-10-2018 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Gene3D G3DSA:3.30.70.870 413 487 4.2E-33 T 11-10-2018 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 5.4E-30 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.7E-64 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Gene3D G3DSA:2.40.30.10 299 412 4.1E-44 T 11-10-2018 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Pfam PF03764 Elongation factor G, domain IV 486 607 9.0E-41 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.0E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.0E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.0E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 PRINTS PR00315 GTP-binding elongation factor signature 101 112 5.0E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.0E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Pfam PF00679 Elongation factor G C-terminus 610 696 5.8E-31 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.8E-18 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Pfam PF14492 Elongation Factor G, domain II 411 485 9.3E-35 T 11-10-2018 AMD27_03530 4c7d7ea9c5c9ad20d29e3ccb8a61b2ed 712 Gene3D G3DSA:3.40.50.300 1 298 8.8E-112 T 11-10-2018 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 4.7E-44 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 Gene3D G3DSA:1.20.5.710 2 50 1.4E-18 T 11-10-2018 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 2.1E-30 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 SUPERFAMILY SSF54736 50 121 2.96E-24 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 49 3.1E-15 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 SUPERFAMILY SSF48300 4 57 4.19E-13 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 99 4.0E-16 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 23.733 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01235 c4044e38cb928b262bddaa763ad91f47 121 Gene3D G3DSA:3.30.1390.10 51 121 2.3E-31 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMD27_14340 f064b819f246c51e7b15d02de13bd97c 135 SUPERFAMILY SSF51316 3 135 4.18E-48 T 11-10-2018 IPR011057 Mss4-like superfamily AMD27_14340 f064b819f246c51e7b15d02de13bd97c 135 Gene3D G3DSA:2.170.150.70 6 122 1.6E-20 T 11-10-2018 AMD27_14340 f064b819f246c51e7b15d02de13bd97c 135 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 116 3.5E-21 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Gene3D G3DSA:2.40.50.140 576 685 4.5E-33 T 11-10-2018 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 SUPERFAMILY SSF57770 138 172 3.27E-12 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 SUPERFAMILY SSF50249 583 684 2.13E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Gene3D G3DSA:2.20.28.20 138 172 6.5E-148 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 248 259 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 382 393 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 4.1E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Gene3D G3DSA:1.10.730.10 378 534 2.9E-34 T 11-10-2018 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Gene3D G3DSA:3.40.50.620 4 377 6.5E-148 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_12210 9c168070ed5386b63788271daa3f854c 685 SUPERFAMILY SSF47323 388 546 8.41E-40 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 4 533 1.9E-168 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 544 38.87 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Pfam PF09334 tRNA synthetases class I (M) 4 394 3.2E-150 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 Pfam PF01588 Putative tRNA binding domain 590 683 8.2E-24 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 SUPERFAMILY SSF52374 3 385 3.07E-98 T 11-10-2018 AMD27_12210 9c168070ed5386b63788271daa3f854c 685 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 558 684 6.4E-41 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMD27_14215 034fd3f2a80626f1b3c192d8f9e5888a 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 197 43.672 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_14215 034fd3f2a80626f1b3c192d8f9e5888a 200 Pfam PF00925 GTP cyclohydrolase II 7 171 6.1E-66 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_14215 034fd3f2a80626f1b3c192d8f9e5888a 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 6 194 2.9E-76 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_14215 034fd3f2a80626f1b3c192d8f9e5888a 200 Gene3D G3DSA:3.40.50.10990 2 175 5.4E-72 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_14215 034fd3f2a80626f1b3c192d8f9e5888a 200 SUPERFAMILY SSF142695 3 174 3.53E-62 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_03875 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Pfam PF13358 DDE superfamily endonuclease 3 27 1.5E-8 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_03875 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Gene3D G3DSA:3.30.420.470 1 46 8.3E-9 T 11-10-2018 AMD27_05695 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Pfam PF13358 DDE superfamily endonuclease 3 27 1.5E-8 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_05695 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Gene3D G3DSA:3.30.420.470 1 46 8.3E-9 T 11-10-2018 AMD27_16085 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Pfam PF13358 DDE superfamily endonuclease 3 27 1.5E-8 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_16085 dfcdbe91bfdf1ae9e92d93a03a93c1ae 46 Gene3D G3DSA:3.30.420.470 1 46 8.3E-9 T 11-10-2018 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 Gene3D G3DSA:3.30.70.1680 1 59 1.2E-28 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 64 17.498 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 SUPERFAMILY SSF117130 1 54 3.66E-20 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 2.6E-29 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMD27_10310 e2dde6839eb407372533336259a99ab2 86 Pfam PF02599 Global regulator protein family 1 52 1.1E-26 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 Gene3D G3DSA:1.10.10.10 4 140 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 Pfam PF01047 MarR family 31 86 1.0E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 SUPERFAMILY SSF46785 7 138 4.25E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.7E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 1.7E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_08170 2ef9de137cd6d2e94dfec0f8568270e6 146 SMART SM00347 24 123 1.7E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_07455 c77e9ddb9e7e567a3d42be70205bb6fb 395 Pfam PF05762 VWA domain containing CoxE-like protein 189 277 9.7E-10 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like AMD27_03035 6213692c5c3b14046b684497afc966aa 443 SUPERFAMILY SSF52540 198 371 4.18E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03035 6213692c5c3b14046b684497afc966aa 443 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 12 360 7.5E-144 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Pfam PF13167 GTP-binding GTPase N-terminal 29 113 5.6E-32 T 11-10-2018 IPR025121 GTPase HflX, N-terminal AMD27_03035 6213692c5c3b14046b684497afc966aa 443 PIRSF PIRSF006809 4 420 4.8E-137 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Gene3D G3DSA:3.40.50.300 198 364 5.3E-36 T 11-10-2018 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Hamap MF_00900 GTPase HflX [hflX]. 28 389 46.001 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Pfam PF01926 50S ribosome-binding GTPase 201 318 3.6E-19 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Gene3D G3DSA:3.40.50.11060 17 139 5.1E-38 T 11-10-2018 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 3.1E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 3.1E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 286 3.1E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_03035 6213692c5c3b14046b684497afc966aa 443 Pfam PF16360 GTP-binding GTPase Middle Region 115 193 3.1E-25 T 11-10-2018 IPR032305 GTP-binding protein, middle domain AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 3.6E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.7E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:3.40.50.300 1 205 3.6E-69 T 11-10-2018 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:2.40.30.10 208 336 6.2E-52 T 11-10-2018 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF52540 6 221 3.48E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF50447 207 303 1.96E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 3.4E-223 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:2.40.30.10 340 395 5.4E-28 T 11-10-2018 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.3E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Pfam PF03143 Elongation factor Tu C-terminal domain 301 394 7.0E-34 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF50465 301 394 2.88E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMD27_03535 259a889732775eef0bc949bf95bfe57a 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.064 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 3.6E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.7E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:3.40.50.300 1 205 3.6E-69 T 11-10-2018 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:2.40.30.10 208 336 6.2E-52 T 11-10-2018 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF52540 6 221 3.48E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF50447 207 303 1.96E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 3.4E-223 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Gene3D G3DSA:2.40.30.10 340 395 5.4E-28 T 11-10-2018 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.3E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Pfam PF03143 Elongation factor Tu C-terminal domain 301 394 7.0E-34 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 SUPERFAMILY SSF50465 301 394 2.88E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMD27_01200 259a889732775eef0bc949bf95bfe57a 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.064 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMD27_15050 957e363d7f87398958ff3be74002da18 110 Pfam PF04341 Protein of unknown function, DUF485 11 95 1.6E-29 T 11-10-2018 IPR007436 Protein of unknown function DUF485 AMD27_12690 55acffb2305291011e5217735eef3bbc 112 Pfam PF08274 PhnA Zinc-Ribbon 2 30 5.4E-16 T 11-10-2018 IPR013987 PhnA protein, N-terminal AMD27_12690 55acffb2305291011e5217735eef3bbc 112 Pfam PF03831 PhnA domain 42 112 1.8E-33 T 11-10-2018 IPR013988 PhnA protein, C-terminal AMD27_12690 55acffb2305291011e5217735eef3bbc 112 Gene3D G3DSA:2.30.30.40 40 112 5.4E-33 T 11-10-2018 AMD27_12690 55acffb2305291011e5217735eef3bbc 112 SUPERFAMILY SSF57783 1 37 9.35E-15 T 11-10-2018 AMD27_12690 55acffb2305291011e5217735eef3bbc 112 SUPERFAMILY SSF82057 37 112 2.15E-27 T 11-10-2018 AMD27_12690 55acffb2305291011e5217735eef3bbc 112 Gene3D G3DSA:2.20.25.10 1 39 1.8E-19 T 11-10-2018 AMD27_12690 55acffb2305291011e5217735eef3bbc 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 112 3.8E-47 T 11-10-2018 IPR004624 PhnA protein AMD27_06705 c5dc774c766e764e3ad6be359b38acfa 259 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 5.2E-14 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMD27_06705 c5dc774c766e764e3ad6be359b38acfa 259 SUPERFAMILY SSF54001 6 241 1.96E-38 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMD27_06705 c5dc774c766e764e3ad6be359b38acfa 259 Pfam PF01841 Transglutaminase-like superfamily 122 212 1.7E-20 T 11-10-2018 IPR002931 Transglutaminase-like AMD27_06705 c5dc774c766e764e3ad6be359b38acfa 259 SMART SM00460 153 215 4.2E-16 T 11-10-2018 IPR002931 Transglutaminase-like AMD27_06705 c5dc774c766e764e3ad6be359b38acfa 259 Gene3D G3DSA:3.10.620.30 71 251 5.3E-42 T 11-10-2018 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 Hamap MF_00013 Octanoyltransferase [lipB]. 15 218 32.482 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 86 139 6.0E-22 T 11-10-2018 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 SUPERFAMILY SSF55681 21 212 1.49E-59 T 11-10-2018 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 Gene3D G3DSA:3.30.930.10 13 213 1.6E-52 T 11-10-2018 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 Pfam PF03099 Biotin/lipoate A/B protein ligase family 75 168 4.8E-8 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 38 209 1.5E-55 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 PIRSF PIRSF016262 11 220 1.4E-55 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMD27_04365 831153d1a1d59a9f7b281dd34326ea84 225 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 82 97 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMD27_05390 981f7680f383e2f3a79f4f40e5e5bceb 354 Pfam PF04909 Amidohydrolase 9 354 4.3E-20 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMD27_05390 981f7680f383e2f3a79f4f40e5e5bceb 354 SUPERFAMILY SSF51556 8 354 6.72E-32 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_05390 981f7680f383e2f3a79f4f40e5e5bceb 354 Gene3D G3DSA:3.20.20.140 6 354 4.8E-71 T 11-10-2018 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 154 5.2E-20 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 SUPERFAMILY SSF55257 6 231 3.53E-31 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Gene3D G3DSA:1.10.150.20 243 327 2.4E-37 T 11-10-2018 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 314 2.6E-104 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 SUPERFAMILY SSF47789 249 322 6.54E-26 T 11-10-2018 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 SUPERFAMILY SSF56553 53 176 5.76E-35 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 306 4.8E-24 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Gene3D G3DSA:2.170.120.12 53 175 1.7E-78 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 225 1.6E-23 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 315 34.464 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 324 7.0E-35 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 Gene3D G3DSA:3.30.1360.10 17 225 1.7E-78 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_13955 572ac743eee607055a77e3a05f44c736 335 SMART SM00662 23 232 8.7E-87 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_06320 5c5c6e61cc3708f6c05a7b55d67fd197 674 SUPERFAMILY SSF52540 20 570 2.48E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06320 5c5c6e61cc3708f6c05a7b55d67fd197 674 Pfam PF12532 Protein of unknown function (DUF3732) 462 668 1.5E-60 T 11-10-2018 IPR022205 Protein of unknown function DUF3732 AMD27_06320 5c5c6e61cc3708f6c05a7b55d67fd197 674 Gene3D G3DSA:3.40.50.300 5 259 6.8E-8 T 11-10-2018 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 Gene3D G3DSA:3.40.50.1970 1 188 1.1E-58 T 11-10-2018 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 385 2.3E-110 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 Gene3D G3DSA:1.20.1090.10 190 394 3.6E-58 T 11-10-2018 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 SUPERFAMILY SSF56796 5 394 1.05E-110 T 11-10-2018 AMD27_04355 00aff5b8dbb120324ecdf1b12f89e854 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 177 205 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMD27_03515 f19766c2e7bfa8a24fe4e94667751ead 500 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 149 319 5.0E-6 T 11-10-2018 AMD27_03515 f19766c2e7bfa8a24fe4e94667751ead 500 Pfam PF12787 EcsC protein family 91 319 4.5E-23 T 11-10-2018 IPR024787 EcsC protein AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Gene3D G3DSA:3.90.1310.10 59 118 1.1E-9 T 11-10-2018 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Gene3D G3DSA:3.90.1310.10 148 264 4.9E-30 T 11-10-2018 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 SUPERFAMILY SSF56601 216 603 1.25E-89 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Gene3D G3DSA:3.30.450.330 265 592 4.0E-122 T 11-10-2018 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Gene3D G3DSA:3.40.710.10 326 508 4.0E-122 T 11-10-2018 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 SUPERFAMILY SSF56519 69 263 6.15E-36 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Pfam PF03717 Penicillin-binding Protein dimerisation domain 74 248 6.1E-17 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 25 603 41.119 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_14670 a1360ec3fddca9a3d90e251d21daa529 608 Pfam PF00905 Penicillin binding protein transpeptidase domain 290 587 2.0E-75 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMD27_11505 20d1d24ad73a9fecbc9a0e21039f443f 256 SUPERFAMILY SSF56300 2 231 6.65E-38 T 11-10-2018 AMD27_11505 20d1d24ad73a9fecbc9a0e21039f443f 256 Pfam PF00149 Calcineurin-like phosphoesterase 2 189 9.3E-15 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_11505 20d1d24ad73a9fecbc9a0e21039f443f 256 Gene3D G3DSA:3.60.21.10 1 219 2.2E-28 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_01070 d1a430edb97c5098ac8d69f74c1c0099 268 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 12 254 33.287 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AMD27_01070 d1a430edb97c5098ac8d69f74c1c0099 268 Pfam PF00149 Calcineurin-like phosphoesterase 14 200 4.5E-16 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_01070 d1a430edb97c5098ac8d69f74c1c0099 268 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 205 254 2.0E-9 T 11-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 AMD27_01070 d1a430edb97c5098ac8d69f74c1c0099 268 Gene3D G3DSA:3.60.21.10 2 265 6.1E-62 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_01070 d1a430edb97c5098ac8d69f74c1c0099 268 SUPERFAMILY SSF56300 14 262 5.11E-54 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 Gene3D G3DSA:3.50.50.60 327 450 5.4E-106 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 SUPERFAMILY SSF52833 1 100 3.8E-25 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 Gene3D G3DSA:3.50.50.60 212 509 5.4E-106 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 SUPERFAMILY SSF51905 204 514 6.48E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.6E-38 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.6E-38 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.6E-38 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.6E-38 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.6E-38 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 3.3E-229 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 5.6E-62 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 1.3E-45 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 Gene3D G3DSA:3.40.30.80 1 199 1.3E-60 T 11-10-2018 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 PIRSF PIRSF000238 1 521 5.5E-251 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 Pfam PF13192 Thioredoxin domain 120 194 2.1E-10 T 11-10-2018 IPR012336 Thioredoxin-like fold AMD27_06025 4fe05d5de01131ffecbd1d0d916c6188 521 SUPERFAMILY SSF52833 103 195 1.29E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 5.3E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 5.3E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 5.3E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 5.3E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 5.3E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 Gene3D G3DSA:3.40.50.1370 134 294 7.2E-111 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 296 7.2E-49 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 3.0E-23 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 3.0E-23 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 3.0E-23 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 3.0E-23 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 SUPERFAMILY SSF53671 2 300 7.59E-101 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 143 8.7E-50 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 Gene3D G3DSA:3.40.50.1370 4 133 7.2E-111 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 77.445 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMD27_08945 179684fd9503a72e0f3ac261d94d0f08 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 299 2.2E-113 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 Gene3D G3DSA:3.65.10.10 6 414 1.1E-173 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 Gene3D G3DSA:3.65.10.10 21 229 1.1E-173 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 SUPERFAMILY SSF55205 1 417 2.62E-142 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.182 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 1.0E-108 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMD27_03330 99663cdcf191420f93dca0ce8b60025c 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 6.7E-174 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Pfam PF13493 Domain of unknown function (DUF4118) 401 500 1.9E-18 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 773 878 7.6E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 PRINTS PR00344 Bacterial sensor protein C-terminal signature 806 820 3.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 834 3.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 858 3.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SUPERFAMILY SSF55781 507 646 1.41E-5 T 11-10-2018 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 229 8.9E-93 T 11-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SUPERFAMILY SSF55874 714 878 3.54E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SUPERFAMILY SSF52540 26 163 3.08E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Gene3D G3DSA:1.10.287.130 649 723 2.3E-17 T 11-10-2018 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Gene3D G3DSA:3.40.50.300 19 228 1.7E-96 T 11-10-2018 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SMART SM00387 768 881 3.3E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Gene3D G3DSA:3.30.450.40 509 647 5.4E-23 T 11-10-2018 IPR029016 GAF-like domain superfamily AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Pfam PF00512 His Kinase A (phospho-acceptor) domain 657 723 4.6E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Gene3D G3DSA:3.30.565.10 734 883 1.9E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SMART SM00388 656 724 2.6E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 Gene3D G3DSA:1.20.120.620 394 498 1.3E-17 T 11-10-2018 IPR038318 KdpD, transmembrane domain superfamily AMD27_06405 e1de4185d551ca178b2330faf5534ce3 883 SUPERFAMILY SSF47384 652 724 5.89E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_03450 ea758fae3fbbfebfa5830477f5e0f7dc 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.2E-27 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMD27_03450 ea758fae3fbbfebfa5830477f5e0f7dc 104 Gene3D G3DSA:1.10.3730.20 1 104 1.2E-31 T 11-10-2018 AMD27_03450 ea758fae3fbbfebfa5830477f5e0f7dc 104 SUPERFAMILY SSF103481 6 103 7.59E-21 T 11-10-2018 AMD27_11870 2def26cf8f0900ac23c20432fb4c606b 165 Pfam PF04093 rod shape-determining protein MreD 18 162 2.5E-11 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMD27_11870 2def26cf8f0900ac23c20432fb4c606b 165 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 17 161 1.0E-20 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMD27_10720 bf287e529c03360de1cfb7d55419f428 333 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 39 330 5.6E-91 T 11-10-2018 IPR011757 Lytic transglycosylase MltB AMD27_10720 bf287e529c03360de1cfb7d55419f428 333 Gene3D G3DSA:1.10.8.350 43 209 2.4E-91 T 11-10-2018 AMD27_10720 bf287e529c03360de1cfb7d55419f428 333 Pfam PF13406 Transglycosylase SLT domain 36 327 2.3E-85 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 AMD27_10720 bf287e529c03360de1cfb7d55419f428 333 Gene3D G3DSA:1.10.530.10 76 327 2.4E-91 T 11-10-2018 AMD27_10720 bf287e529c03360de1cfb7d55419f428 333 SUPERFAMILY SSF53955 20 331 3.94E-79 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 123 1.7E-15 T 11-10-2018 IPR031982 Type IV minor pilin ComP AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 SUPERFAMILY SSF54523 8 136 4.63E-23 T 11-10-2018 AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 Gene3D G3DSA:3.30.700.10 8 151 4.0E-24 T 11-10-2018 AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 2.5E-11 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 2.5E-11 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 5.9E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01660 9a66d89cbd846ed1a42f027c069a46bc 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 1.1E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 PIRSF PIRSF000525 1 359 1.6E-152 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 Pfam PF00266 Aminotransferase class-V 4 347 2.4E-54 T 11-10-2018 IPR000192 Aminotransferase class V domain AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 SUPERFAMILY SSF53383 2 357 6.49E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 358 50.56 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 Gene3D G3DSA:3.90.1150.10 250 359 1.1E-44 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 357 7.7E-161 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 205 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMD27_11070 cb055e4d063060ce7b50c46ea2e40c2f 359 Gene3D G3DSA:3.40.640.10 16 249 3.7E-94 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_13375 e458f4bd6b5fa7b61d6a3480f10e7094 775 SUPERFAMILY SSF82866 617 758 5.36E-20 T 11-10-2018 AMD27_13375 e458f4bd6b5fa7b61d6a3480f10e7094 775 Gene3D G3DSA:1.20.1640.10 598 705 1.7E-5 T 11-10-2018 AMD27_13375 e458f4bd6b5fa7b61d6a3480f10e7094 775 SUPERFAMILY SSF82866 183 400 6.28E-20 T 11-10-2018 AMD27_09825 4a973fb728ce885c578289690ac468f5 149 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 10 118 9.9E-12 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_09825 4a973fb728ce885c578289690ac468f5 149 SUPERFAMILY SSF55083 8 129 1.96E-13 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_09825 4a973fb728ce885c578289690ac468f5 149 Gene3D G3DSA:3.30.70.560 6 136 4.0E-11 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 SMART SM00878 334 440 1.1E-63 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.5E-44 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 320 1.5E-74 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 SUPERFAMILY SSF51246 329 442 1.46E-42 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 SUPERFAMILY SSF56059 83 344 2.47E-70 T 11-10-2018 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 2.0E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Gene3D G3DSA:3.40.50.20 1 85 1.1E-34 T 11-10-2018 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 SUPERFAMILY SSF52440 1 113 1.22E-47 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 3.1E-210 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Gene3D G3DSA:3.30.470.20 87 430 5.7E-149 T 11-10-2018 AMD27_08600 cfcddf0c3a4ae9f652f7033bf1546103 452 Gene3D G3DSA:3.30.1490.20 131 201 5.7E-149 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 254 265 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 226 233 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 Gene3D G3DSA:3.40.309.10 230 432 2.2E-149 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 SUPERFAMILY SSF53720 9 453 3.27E-116 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 Pfam PF00171 Aldehyde dehydrogenase family 2 450 4.4E-95 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 Gene3D G3DSA:3.40.605.10 32 452 2.2E-149 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_02215 ab6aeef5f3449ea2c52bd861d83f03cd 482 PIRSF PIRSF036492 2 482 2.6E-156 T 11-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 Gene3D G3DSA:3.40.710.10 64 338 6.0E-66 T 11-10-2018 AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 204 217 1.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 136 1.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 177 194 1.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 SUPERFAMILY SSF56601 88 336 5.36E-58 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_01000 01033739318d2c9cb629c382c38cfe97 343 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 92 320 1.4E-55 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 SUPERFAMILY SSF47781 65 138 8.45E-28 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 SMART SM00278 88 107 0.36 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 SMART SM00278 118 137 2.9 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 Pfam PF12836 Helix-hairpin-helix motif 79 138 3.6E-23 T 11-10-2018 AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 76 139 2.2E-25 T 11-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AMD27_02645 1dcd3edf1d36c1ef68c55c9356d3b454 140 Gene3D G3DSA:1.10.150.280 60 139 1.6E-23 T 11-10-2018 AMD27_06390 4dfba9bc1472033f46fcd6c20cec3c9a 574 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 571 27.194 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMD27_06390 4dfba9bc1472033f46fcd6c20cec3c9a 574 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 2 570 2.7E-156 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMD27_06390 4dfba9bc1472033f46fcd6c20cec3c9a 574 Pfam PF03814 Potassium-transporting ATPase A subunit 6 569 1.4E-206 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMD27_06390 4dfba9bc1472033f46fcd6c20cec3c9a 574 PIRSF PIRSF001294 1 573 5.1E-210 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMD27_07070 21753f9beefb00583197df4f4bf1e935 74 Gene3D G3DSA:3.90.1680.10 1 66 6.6E-9 T 11-10-2018 IPR036590 SOS response associated peptidase-like AMD27_07070 21753f9beefb00583197df4f4bf1e935 74 SUPERFAMILY SSF143081 2 55 1.09E-6 T 11-10-2018 IPR036590 SOS response associated peptidase-like AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 Gene3D G3DSA:3.90.226.10 359 592 2.2E-53 T 11-10-2018 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 275 353 1.3E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 237 590 6.5E-73 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 Pfam PF03572 Peptidase family S41 396 569 8.0E-41 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 575 722 4.8E-29 T 11-10-2018 IPR020992 Tail specific protease, C-terminal AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 SUPERFAMILY SSF50156 273 359 1.43E-10 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 Gene3D G3DSA:2.30.42.10 269 354 7.9E-10 T 11-10-2018 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 SUPERFAMILY SSF52096 226 578 2.15E-53 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 SMART SM00228 277 357 9.2E-6 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_02450 98e79e2cbbfb36eed60b9ae91586403a 727 SMART SM00245 361 571 2.2E-34 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 Gene3D G3DSA:3.40.605.10 32 465 7.1E-149 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 SUPERFAMILY SSF53720 6 490 3.53E-148 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 Pfam PF00171 Aldehyde dehydrogenase family 22 484 1.3E-142 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 13 488 1.2E-226 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 AMD27_09450 e1f1aa5c133892bc10541cd5a725d21d 505 Gene3D G3DSA:3.40.309.10 257 457 7.1E-149 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 SUPERFAMILY SSF55920 10 268 5.63E-89 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 Pfam PF00557 Metallopeptidase family M24 19 256 2.5E-52 T 11-10-2018 IPR000994 Peptidase M24 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 Gene3D G3DSA:3.90.230.10 10 274 7.7E-108 T 11-10-2018 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 182 200 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 219 6.6E-23 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 95 6.6E-23 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 176 188 6.6E-23 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 6.6E-23 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 Hamap MF_01974 Methionine aminopeptidase [map]. 10 265 41.45 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_10755 bd51eb1110b3b52275e96b9fa415e570 274 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 12 264 3.4E-98 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 253 267 - T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 SMART SM00382 188 315 0.0026 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 Gene3D G3DSA:3.30.450.90 41 161 5.3E-16 T 11-10-2018 AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 SUPERFAMILY SSF52540 53 425 1.68E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 Pfam PF00437 Type II/IV secretion system protein 67 325 8.2E-63 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_17480 229bcd764d6895a8a5c65847da07ce17 498 Gene3D G3DSA:3.40.50.300 164 429 2.3E-81 T 11-10-2018 AMD27_11590 0742e82eca6f94c919c95fe8ec44e2dd 216 PIRSF PIRSF005461 3 216 1.0E-78 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMD27_11590 0742e82eca6f94c919c95fe8ec44e2dd 216 SUPERFAMILY SSF53335 34 212 1.38E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_11590 0742e82eca6f94c919c95fe8ec44e2dd 216 Pfam PF01728 FtsJ-like methyltransferase 35 210 5.8E-55 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMD27_11590 0742e82eca6f94c919c95fe8ec44e2dd 216 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 19 212 30.301 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMD27_11590 0742e82eca6f94c919c95fe8ec44e2dd 216 Gene3D G3DSA:3.40.50.150 34 213 1.9E-58 T 11-10-2018 AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 SUPERFAMILY SSF56784 10 221 2.85E-52 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 Gene3D G3DSA:1.10.150.240 24 94 5.0E-55 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 13 221 1.3E-49 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 195 1.9E-31 T 11-10-2018 AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 189 2.6E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_01170 59fddb6b94c2fdf48bdcf0619cc3ddb4 223 Gene3D G3DSA:3.40.50.1000 12 216 5.0E-55 T 11-10-2018 IPR023214 HAD superfamily AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 Pfam PF00355 Rieske [2Fe-2S] domain 26 78 5.9E-7 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 Gene3D G3DSA:2.102.10.10 11 113 2.5E-13 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 SUPERFAMILY SSF51395 124 532 1.15E-94 T 11-10-2018 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 Pfam PF01645 Conserved region in glutamate synthase 202 508 3.6E-82 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 SUPERFAMILY SSF50022 2 108 5.11E-16 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 Gene3D G3DSA:3.20.20.70 197 534 2.3E-92 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 PIRSF PIRSF500061 80 539 3.2E-131 T 11-10-2018 AMD27_02695 1f27367a8374984a2804a9757e6c77d5 539 PIRSF PIRSF006429 56 539 2.0E-127 T 11-10-2018 IPR024188 Glutamate synthase large subunit-like protein AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 Gene3D G3DSA:3.40.50.150 103 300 6.4E-53 T 11-10-2018 AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 SUPERFAMILY SSF53335 71 290 6.87E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 PIRSF PIRSF000401 1 299 2.1E-83 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 291 2.1E-84 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 297 31.192 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMD27_09885 f9a10ca06faf5f6eed079a0f4d23dd59 301 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 297 4.7E-87 T 11-10-2018 AMD27_08860 2b28097bc3ac57ca596d6e7b7dacca00 161 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 16 153 1.8E-56 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_08860 2b28097bc3ac57ca596d6e7b7dacca00 161 Pfam PF07977 FabA-like domain 25 149 7.5E-34 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_08860 2b28097bc3ac57ca596d6e7b7dacca00 161 SUPERFAMILY SSF54637 18 152 4.92E-45 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_08860 2b28097bc3ac57ca596d6e7b7dacca00 161 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 16 157 31.373 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_08860 2b28097bc3ac57ca596d6e7b7dacca00 161 Gene3D G3DSA:3.10.129.10 10 158 1.3E-55 T 11-10-2018 AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 Gene3D G3DSA:3.10.310.30 320 450 1.4E-31 T 11-10-2018 AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 Gene3D G3DSA:3.90.1640.30 47 318 4.4E-88 T 11-10-2018 AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 Pfam PF02272 DHHA1 domain 314 446 1.3E-25 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 SUPERFAMILY SSF64182 51 449 1.31E-109 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 Pfam PF01368 DHH family 71 224 3.1E-11 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMD27_15250 90332d97e726d2f98cce88fbfe16286c 567 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 562 8.1E-155 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMD27_17835 0608827291db7289090b37839ff993dc 100 SUPERFAMILY SSF47413 23 83 1.63E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_17835 0608827291db7289090b37839ff993dc 100 Gene3D G3DSA:1.10.260.40 36 86 1.5E-5 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF53955 128 285 5.48E-41 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 859 912 3.6E-14 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 809 853 5.75E-8 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 604 641 4.7E-7 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 862 904 2.0E-12 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 810 853 1.9E-8 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 666 707 3.2E-11 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 1010 1053 1.9E-8 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 1059 1102 4.9E-10 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 938 980 8.3E-9 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01476 LysM domain 733 777 2.6E-6 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 663 708 9.02E-9 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 795 858 2.6E-11 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 1057 1104 2.1E-11 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 590 653 6.3E-9 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 995 1056 1.4E-12 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 654 722 6.7E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 922 994 2.0E-11 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:3.10.350.10 723 794 9.4E-9 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 1058 1102 1.4E-10 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 732 777 5.1E-5 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 809 853 1.6E-10 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 665 709 2.9E-10 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 600 644 0.0097 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 861 905 3.0E-14 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 1009 1053 2.8E-9 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 937 981 2.6E-7 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SMART SM00257 289 333 21.0 T 11-10-2018 IPR018392 LysM domain AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Pfam PF01464 Transglycosylase SLT domain 136 238 5.6E-24 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 731 777 8.11E-6 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 149 177 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 Gene3D G3DSA:1.10.530.10 126 275 2.1E-29 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 1058 1102 5.36E-8 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 599 643 2.09E-7 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 860 905 6.28E-9 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 937 980 1.83E-7 T 11-10-2018 AMD27_04930 79e32bca87d2ee467c1adb07c19b80e4 1104 SUPERFAMILY SSF54106 1008 1053 3.14E-8 T 11-10-2018 AMD27_00805 83814d01aa487af16849b8168136592d 802 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 417 437 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMD27_00805 83814d01aa487af16849b8168136592d 802 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 30 681 1.4E-254 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMD27_00805 83814d01aa487af16849b8168136592d 802 Pfam PF11842 Domain of unknown function (DUF3362) 631 781 1.1E-62 T 11-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal AMD27_00805 83814d01aa487af16849b8168136592d 802 Pfam PF08497 Radical SAM N-terminal 30 416 9.0E-140 T 11-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal AMD27_00805 83814d01aa487af16849b8168136592d 802 Gene3D G3DSA:3.80.30.20 413 677 5.1E-15 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMD27_00805 83814d01aa487af16849b8168136592d 802 SMART SM00729 413 663 8.8E-7 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_00805 83814d01aa487af16849b8168136592d 802 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 30 683 48.747 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMD27_00805 83814d01aa487af16849b8168136592d 802 Pfam PF04055 Radical SAM superfamily 417 620 2.4E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_00805 83814d01aa487af16849b8168136592d 802 SUPERFAMILY SSF102114 397 659 6.41E-10 T 11-10-2018 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 SUPERFAMILY SSF52172 1 178 3.89E-41 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 SMART SM00448 1 111 2.3E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 Gene3D G3DSA:3.40.50.2300 1 124 4.3E-36 T 11-10-2018 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 Pfam PF00072 Response regulator receiver domain 3 111 1.7E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 1.4E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 Gene3D G3DSA:1.10.10.10 125 223 1.2E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 SMART SM00862 144 219 1.3E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_04850 3bc3c724fa3ebc4a36d4962dc2c49c43 223 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 219 2.0E-97 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.6E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 SUPERFAMILY SSF46785 2 111 1.9E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 SUPERFAMILY SSF53850 89 293 3.72E-43 T 11-10-2018 AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 Gene3D G3DSA:3.40.190.10 90 290 1.3E-63 T 11-10-2018 AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 Pfam PF03466 LysR substrate binding domain 88 293 5.6E-46 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 Gene3D G3DSA:3.40.190.10 162 265 1.3E-63 T 11-10-2018 AMD27_09075 3efc75d305939c2d2f03578eb0213bfd 300 Gene3D G3DSA:1.10.10.10 1 88 1.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_00955 1ff349b427509676036196af11d85426 135 Gene3D G3DSA:3.40.50.10110 1 135 5.1E-33 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMD27_00955 1ff349b427509676036196af11d85426 135 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 130 3.5E-31 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AMD27_00955 1ff349b427509676036196af11d85426 135 SUPERFAMILY SSF102400 1 134 7.32E-35 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMD27_13830 78b38ce8b00c8576b2e0251b1b7f418a 191 Pfam PF00156 Phosphoribosyl transferase domain 44 157 2.8E-6 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_13830 78b38ce8b00c8576b2e0251b1b7f418a 191 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 41.798 T 11-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 AMD27_13830 78b38ce8b00c8576b2e0251b1b7f418a 191 Gene3D G3DSA:3.40.50.2020 3 188 9.0E-53 T 11-10-2018 AMD27_13830 78b38ce8b00c8576b2e0251b1b7f418a 191 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 190 9.3E-86 T 11-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 AMD27_13830 78b38ce8b00c8576b2e0251b1b7f418a 191 SUPERFAMILY SSF53271 4 186 1.4E-44 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.4E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 Gene3D G3DSA:1.10.357.10 10 195 9.9E-33 T 11-10-2018 AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 SUPERFAMILY SSF48498 89 177 3.84E-7 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 SUPERFAMILY SSF46689 8 80 7.98E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 2.8E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_07635 45fbedc49f3e4fa9870769b6c00e2621 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 2.8E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_06065 1b447e0ec44ee96953a31cad6cac5e19 254 Pfam PF01553 Acyltransferase 26 149 5.6E-9 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_06065 1b447e0ec44ee96953a31cad6cac5e19 254 SMART SM00563 37 154 1.1E-7 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_06065 1b447e0ec44ee96953a31cad6cac5e19 254 SUPERFAMILY SSF69593 17 236 1.26E-10 T 11-10-2018 AMD27_07715 1566320bc021dd957acde9db86247a0c 248 Pfam PF02585 GlcNAc-PI de-N-acetylase 37 161 4.3E-23 T 11-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 AMD27_07715 1566320bc021dd957acde9db86247a0c 248 Gene3D G3DSA:3.40.50.10320 8 237 8.1E-36 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AMD27_07715 1566320bc021dd957acde9db86247a0c 248 SUPERFAMILY SSF102588 34 227 1.83E-38 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Gene3D G3DSA:1.10.287.1150 82 164 3.0E-25 T 11-10-2018 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 PIRSF PIRSF000157 1 936 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 SMART SM00861 593 786 1.2E-58 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Gene3D G3DSA:3.40.50.11610 723 931 1.4E-162 T 11-10-2018 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 14 50 8.2E-13 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 SUPERFAMILY SSF52518 119 546 1.25E-87 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Gene3D G3DSA:3.40.50.12470 556 802 1.4E-162 T 11-10-2018 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Pfam PF00676 Dehydrogenase E1 component 210 515 8.1E-52 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Pfam PF02779 Transketolase, pyrimidine binding domain 593 787 8.0E-62 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 SUPERFAMILY SSF52518 576 793 9.81E-47 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 934 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Gene3D G3DSA:3.40.50.970 165 525 1.6E-147 T 11-10-2018 AMD27_04660 4cfc338b0acdd08f1f811e1f1fe3f2c3 945 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 934 3.5E-51 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 Gene3D G3DSA:3.30.565.10 305 460 4.2E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_04845 e3d2c835197383a2c107095735f5f444 464 SUPERFAMILY SSF47384 221 303 9.02E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 SMART SM00388 237 303 2.5E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 302 4.4E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 SMART SM00387 348 457 2.2E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_04845 e3d2c835197383a2c107095735f5f444 464 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 8 455 1.1E-101 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 SUPERFAMILY SSF55874 292 454 4.58E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_04845 e3d2c835197383a2c107095735f5f444 464 Gene3D G3DSA:1.10.287.130 187 304 4.4E-18 T 11-10-2018 AMD27_04845 e3d2c835197383a2c107095735f5f444 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 351 454 3.0E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 Gene3D G3DSA:3.40.50.300 5 275 2.2E-55 T 11-10-2018 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 SUPERFAMILY SSF52540 2 254 9.76E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 SMART SM00382 26 222 8.8E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 SMART SM00382 336 503 2.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 Gene3D G3DSA:3.40.50.300 276 535 4.0E-52 T 11-10-2018 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 Pfam PF00005 ABC transporter 328 459 6.3E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 SUPERFAMILY SSF52540 295 516 5.55E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 Pfam PF00005 ABC transporter 18 177 2.7E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_00060 e1da8107e52fa57ca56345a21f23d0f3 645 Pfam PF12848 ABC transporter 216 294 1.1E-27 T 11-10-2018 IPR032781 ABC-transporter extension domain AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 PIRSF PIRSF006004 24 402 4.2E-147 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 Gene3D G3DSA:3.20.20.70 92 373 5.8E-107 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 Pfam PF04055 Radical SAM superfamily 140 317 1.0E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 SUPERFAMILY SSF102114 136 356 1.01E-15 T 11-10-2018 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 29 393 9.1E-141 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 30 388 74.761 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMD27_13470 df50497a12e6490fe7ab33cbf4ec7312 411 Gene3D G3DSA:1.10.150.530 30 91 2.7E-24 T 11-10-2018 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 7.3E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 7.3E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 7.3E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 140 164 7.3E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 PIRSF PIRSF006648 1 254 2.4E-19 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMD27_10700 98fa13b6eb39b18462c7b6e7ecef5332 257 Pfam PF01061 ABC-2 type transporter 10 219 3.9E-37 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 Gene3D G3DSA:3.40.710.10 1 307 2.5E-124 T 11-10-2018 AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 Hamap MF_00313 Glutaminase [glsA]. 5 305 40.628 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 Gene3D G3DSA:3.30.750.24 318 408 8.3E-21 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 SUPERFAMILY SSF56601 4 305 1.65E-109 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 TIGRFAM TIGR03814 Gln_ase: glutaminase A 12 304 4.1E-106 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 SUPERFAMILY SSF52091 327 399 1.96E-6 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_04065 7e239f2c1bfafc120fd7e9e652ef4b9c 429 Pfam PF04960 Glutaminase 22 304 1.4E-115 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMD27_14265 85f31251d328dbf9f0a04d9df1ed3dbc 457 Pfam PF01554 MatE 24 183 2.8E-29 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_14265 85f31251d328dbf9f0a04d9df1ed3dbc 457 Pfam PF01554 MatE 250 409 2.9E-28 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_14265 85f31251d328dbf9f0a04d9df1ed3dbc 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 424 6.9E-86 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_14265 85f31251d328dbf9f0a04d9df1ed3dbc 457 PIRSF PIRSF006603 14 456 6.2E-63 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_10380 00e93bc1aaf878767615cb1962852787 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.7E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_10380 00e93bc1aaf878767615cb1962852787 306 Pfam PF03466 LysR substrate binding domain 90 293 1.8E-33 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_10380 00e93bc1aaf878767615cb1962852787 306 Gene3D G3DSA:3.40.190.10 90 292 1.4E-68 T 11-10-2018 AMD27_10380 00e93bc1aaf878767615cb1962852787 306 Gene3D G3DSA:1.10.10.10 1 89 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10380 00e93bc1aaf878767615cb1962852787 306 SUPERFAMILY SSF46785 1 112 2.98E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_10380 00e93bc1aaf878767615cb1962852787 306 SUPERFAMILY SSF53850 89 297 4.03E-34 T 11-10-2018 AMD27_10380 00e93bc1aaf878767615cb1962852787 306 Gene3D G3DSA:3.40.190.10 163 271 1.4E-68 T 11-10-2018 AMD27_15395 e8fb1188d7412fad5c5c0aceb8dbf4fb 243 SUPERFAMILY SSF111364 25 243 8.89E-62 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 AMD27_15395 e8fb1188d7412fad5c5c0aceb8dbf4fb 243 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 47 228 8.6E-13 T 11-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AMD27_15395 e8fb1188d7412fad5c5c0aceb8dbf4fb 243 Gene3D G3DSA:2.40.230.20 21 240 2.1E-23 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 AMD27_13370 2f3dd47a6cf67516b6f8d69802f8060c 433 SUPERFAMILY SSF51905 5 375 2.06E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13370 2f3dd47a6cf67516b6f8d69802f8060c 433 Gene3D G3DSA:3.50.50.60 3 433 1.2E-125 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13370 2f3dd47a6cf67516b6f8d69802f8060c 433 Pfam PF01494 FAD binding domain 7 298 5.1E-19 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMD27_01125 b78daf267ce89f5c0562311f3755ced6 260 Gene3D G3DSA:3.40.50.10090 4 225 1.1E-40 T 11-10-2018 AMD27_01125 b78daf267ce89f5c0562311f3755ced6 260 SUPERFAMILY SSF69618 5 225 7.98E-37 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01125 b78daf267ce89f5c0562311f3755ced6 260 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 226 2.3E-25 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMD27_01125 b78daf267ce89f5c0562311f3755ced6 260 Gene3D G3DSA:3.40.50.10090 32 166 1.1E-40 T 11-10-2018 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 20 71 8.0E-23 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.908 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 4.6E-35 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.1E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.1E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.1E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.1E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Gene3D G3DSA:4.10.640.10 1 75 6.2E-27 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 SUPERFAMILY SSF46911 3 74 2.62E-28 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Pfam PF01084 Ribosomal protein S18 18 68 1.3E-23 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06610 3b5a05a330e9d41dcb4c44dd5ef1274d 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_00715 3e29cf4188c9ad0e5d7410e2ca890560 383 Pfam PF01476 LysM domain 56 101 1.3E-14 T 11-10-2018 IPR018392 LysM domain AMD27_00715 3e29cf4188c9ad0e5d7410e2ca890560 383 Gene3D G3DSA:3.10.350.10 55 100 4.4E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_00715 3e29cf4188c9ad0e5d7410e2ca890560 383 SMART SM00257 55 103 3.3E-4 T 11-10-2018 IPR018392 LysM domain AMD27_00715 3e29cf4188c9ad0e5d7410e2ca890560 383 SUPERFAMILY SSF54106 54 102 1.44E-7 T 11-10-2018 AMD27_09135 18d8bf87fadd2ee1f965f3f025802b8d 129 Pfam PF04977 Septum formation initiator 20 97 3.7E-22 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AMD27_09135 18d8bf87fadd2ee1f965f3f025802b8d 129 Hamap MF_00599 Cell division protein FtsB [ftsB]. 11 99 24.784 T 11-10-2018 IPR023081 Cell division protein FtsB AMD27_09735 24fe80802304774fa9698b26adc7a6cf 305 Pfam PF00849 RNA pseudouridylate synthase 104 251 4.4E-24 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_09735 24fe80802304774fa9698b26adc7a6cf 305 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 143 157 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_09735 24fe80802304774fa9698b26adc7a6cf 305 Gene3D G3DSA:3.30.2350.10 87 302 1.1E-43 T 11-10-2018 AMD27_09735 24fe80802304774fa9698b26adc7a6cf 305 SUPERFAMILY SSF55120 90 302 1.36E-47 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 SUPERFAMILY SSF46785 2 62 1.96E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 Gene3D G3DSA:1.10.10.10 1 55 7.4E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 Gene3D G3DSA:3.30.70.920 56 140 3.6E-21 T 11-10-2018 AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 45 2.1E-8 T 11-10-2018 AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 SUPERFAMILY SSF54909 65 144 2.06E-14 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 5.0E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMD27_09485 47b37c452cd86ccfb349c7002ed4b1d3 156 SMART SM00344 3 112 2.2E-22 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMD27_15325 507ed0c820e427553a0415619857d325 482 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 416 2.4E-20 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMD27_15325 507ed0c820e427553a0415619857d325 482 SUPERFAMILY SSF53623 108 325 5.36E-72 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_15325 507ed0c820e427553a0415619857d325 482 Gene3D G3DSA:3.40.50.720 23 110 4.6E-31 T 11-10-2018 AMD27_15325 507ed0c820e427553a0415619857d325 482 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 480 42.097 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15325 507ed0c820e427553a0415619857d325 482 Gene3D G3DSA:3.90.190.20 324 480 1.3E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_15325 507ed0c820e427553a0415619857d325 482 Pfam PF01225 Mur ligase family, catalytic domain 24 122 3.5E-28 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMD27_15325 507ed0c820e427553a0415619857d325 482 SUPERFAMILY SSF51984 22 109 4.32E-28 T 11-10-2018 AMD27_15325 507ed0c820e427553a0415619857d325 482 Pfam PF08245 Mur ligase middle domain 127 307 8.7E-30 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_15325 507ed0c820e427553a0415619857d325 482 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 24 472 8.1E-168 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMD27_15325 507ed0c820e427553a0415619857d325 482 SUPERFAMILY SSF53244 326 474 1.52E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_15325 507ed0c820e427553a0415619857d325 482 Gene3D G3DSA:3.40.1190.10 111 323 2.2E-80 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Gene3D G3DSA:3.30.565.10 1 229 5.8E-77 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Pfam PF00183 Hsp90 protein 226 637 1.0E-125 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 122 144 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 95 112 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 174 191 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 77 94 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 28 50 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 7 27 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PRINTS PR00775 90kDa heat shock protein signature 192 210 4.9E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Gene3D G3DSA:3.30.230.80 244 415 1.3E-65 T 11-10-2018 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 638 31.007 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 SUPERFAMILY SSF110942 528 638 1.26E-32 T 11-10-2018 IPR037196 HSP90, C-terminal domain AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 SUPERFAMILY SSF55874 7 217 3.43E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Gene3D G3DSA:3.40.50.11260 416 503 2.0E-29 T 11-10-2018 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 SUPERFAMILY SSF54211 245 502 2.35E-92 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 SMART SM00387 29 186 1.0E-4 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 PIRSF PIRSF002583 1 639 5.3E-211 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 184 6.0E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_01285 69b4786d91f69d786ea565de5e11f415 639 Gene3D G3DSA:1.20.120.790 509 639 1.7E-40 T 11-10-2018 IPR037196 HSP90, C-terminal domain AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 SMART SM00839 203 445 2.0E-85 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 113 127 1.4E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 192 214 1.4E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 234 254 1.4E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 371 382 1.4E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 201 445 1.7E-85 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Gene3D G3DSA:1.10.285.10 384 447 9.3E-12 T 11-10-2018 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Gene3D G3DSA:3.40.50.10860 54 189 5.9E-167 T 11-10-2018 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 121 134 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 SUPERFAMILY SSF51735 201 447 1.08E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 56 183 3.3E-48 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 SUPERFAMILY SSF53223 6 195 3.52E-73 T 11-10-2018 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Gene3D G3DSA:1.10.285.10 8 383 5.9E-167 T 11-10-2018 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 PIRSF PIRSF000185 21 447 6.4E-112 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AMD27_04735 a12cec3d54f43a6042791c6229a8b947 447 Gene3D G3DSA:3.40.50.720 208 372 5.9E-167 T 11-10-2018 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 SUPERFAMILY SSF55821 2 202 1.01E-84 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 1.4E-73 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.324 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 Pfam PF00925 GTP cyclohydrolase II 209 365 4.9E-30 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 SUPERFAMILY SSF142695 205 365 3.14E-35 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.0E-81 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 PIRSF PIRSF001259 2 371 3.6E-116 T 11-10-2018 AMD27_15610 24e8878f2af9b7014171fbd62fbb971f 373 Gene3D G3DSA:3.90.870.10 1 206 1.6E-85 T 11-10-2018 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 422 1.7E-156 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 SMART SM00316 37 117 9.6E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 SUPERFAMILY SSF50249 40 123 1.94E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 Gene3D G3DSA:2.40.50.140 31 123 5.3E-28 T 11-10-2018 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 Pfam PF00575 S1 RNA binding domain 36 116 1.8E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 Gene3D G3DSA:3.40.1260.20 399 505 5.0E-31 T 11-10-2018 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 Pfam PF10150 Ribonuclease E/G family 119 388 1.7E-92 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMD27_01910 67d7e4275ff1c8deb1f074881f02dd84 1182 Hamap MF_00970 Ribonuclease E [rne]. 1 1144 32.014 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AMD27_11050 46bcf649592709ad311bfee76c41a219 215 Gene3D G3DSA:3.30.420.10 8 206 7.8E-45 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_11050 46bcf649592709ad311bfee76c41a219 215 Hamap MF_00157 Ribonuclease T [rnt]. 1 215 89.397 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AMD27_11050 46bcf649592709ad311bfee76c41a219 215 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 203 1.7E-83 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AMD27_11050 46bcf649592709ad311bfee76c41a219 215 SUPERFAMILY SSF53098 8 205 1.62E-50 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_11050 46bcf649592709ad311bfee76c41a219 215 Pfam PF00929 Exonuclease 19 196 2.0E-30 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_11050 46bcf649592709ad311bfee76c41a219 215 SMART SM00479 17 205 2.5E-19 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_09435 f840500dbe838fc42d0904762a50a813 375 SUPERFAMILY SSF47203 225 375 2.9E-59 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Gene3D G3DSA:1.20.140.10 233 375 2.1E-57 T 11-10-2018 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 7.9E-25 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 PIRSF PIRSF016578 236 371 2.6E-12 T 11-10-2018 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 PIRSF PIRSF016578 1 193 1.2E-12 T 11-10-2018 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 3.4E-52 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 SUPERFAMILY SSF56645 2 240 3.27E-82 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Gene3D G3DSA:2.40.110.10 119 232 3.2E-40 T 11-10-2018 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Gene3D G3DSA:1.10.540.10 1 118 2.8E-44 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_09435 f840500dbe838fc42d0904762a50a813 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 1.6E-36 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_08850 660256f317b826a1fdaa658324ee504d 277 Pfam PF13174 Tetratricopeptide repeat 197 230 0.0013 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_08850 660256f317b826a1fdaa658324ee504d 277 Pfam PF13174 Tetratricopeptide repeat 160 191 0.047 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_08850 660256f317b826a1fdaa658324ee504d 277 Gene3D G3DSA:1.25.40.10 158 277 3.6E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_08850 660256f317b826a1fdaa658324ee504d 277 SUPERFAMILY SSF48452 159 273 6.45E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_08850 660256f317b826a1fdaa658324ee504d 277 Pfam PF16331 TolA binding protein trimerisation 50 103 8.2E-11 T 11-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 AMD27_04770 85bb9489c5c15cda8335769011f984bc 193 Gene3D G3DSA:3.40.50.10420 1 191 3.3E-47 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMD27_04770 85bb9489c5c15cda8335769011f984bc 193 PIRSF PIRSF006806 1 189 3.8E-37 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMD27_04770 85bb9489c5c15cda8335769011f984bc 193 SUPERFAMILY SSF100950 6 193 6.28E-44 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_04770 85bb9489c5c15cda8335769011f984bc 193 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 6 187 2.6E-42 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMD27_04770 85bb9489c5c15cda8335769011f984bc 193 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 187 1.4E-34 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMD27_14690 06ed2306733207146ac1e5e2637a029d 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 328 4.2E-140 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMD27_14690 06ed2306733207146ac1e5e2637a029d 332 Gene3D G3DSA:3.40.190.10 116 327 1.3E-129 T 11-10-2018 AMD27_14690 06ed2306733207146ac1e5e2637a029d 332 Gene3D G3DSA:3.40.190.10 29 297 1.3E-129 T 11-10-2018 AMD27_14690 06ed2306733207146ac1e5e2637a029d 332 Pfam PF13531 Bacterial extracellular solute-binding protein 47 282 3.8E-42 T 11-10-2018 AMD27_14690 06ed2306733207146ac1e5e2637a029d 332 SUPERFAMILY SSF53850 23 328 1.09E-81 T 11-10-2018 AMD27_10225 989097092a25aad301082e45909672e8 301 PIRSF PIRSF000441 122 293 3.3E-53 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMD27_10225 989097092a25aad301082e45909672e8 301 Gene3D G3DSA:1.10.3130.10 32 188 1.2E-48 T 11-10-2018 AMD27_10225 989097092a25aad301082e45909672e8 301 Gene3D G3DSA:2.160.10.10 189 300 7.5E-32 T 11-10-2018 AMD27_10225 989097092a25aad301082e45909672e8 301 SUPERFAMILY SSF51161 112 291 1.1E-47 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_10225 989097092a25aad301082e45909672e8 301 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 248 282 7.2E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_10225 989097092a25aad301082e45909672e8 301 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 228 1.3E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 Pfam PF00871 Acetokinase family 5 381 6.4E-126 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 313 329 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 5 16 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 291 304 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 368 380 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 165 178 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PRINTS PR00471 Acetate kinase family signature 194 215 2.8E-40 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 Hamap MF_00020 Acetate kinase [ackA]. 1 391 157.756 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 Gene3D G3DSA:3.30.420.40 189 399 2.1E-69 T 11-10-2018 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 PIRSF PIRSF000722 1 391 2.4E-128 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 TIGRFAM TIGR00016 ackA: acetate kinase 4 385 1.3E-128 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 SUPERFAMILY SSF53067 149 386 2.67E-78 T 11-10-2018 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 Gene3D G3DSA:3.30.420.40 2 186 1.8E-61 T 11-10-2018 AMD27_02410 7580b6d3f4f5d37557b81ea2ead784e1 406 SUPERFAMILY SSF53067 5 186 2.07E-58 T 11-10-2018 AMD27_01260 ce5d82db05775b35601347f5ea65ec4a 162 Gene3D G3DSA:3.10.129.10 8 157 2.5E-25 T 11-10-2018 AMD27_01260 ce5d82db05775b35601347f5ea65ec4a 162 SUPERFAMILY SSF54637 10 158 1.14E-18 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_01260 ce5d82db05775b35601347f5ea65ec4a 162 Pfam PF14539 Domain of unknown function (DUF4442) 13 151 1.3E-13 T 11-10-2018 IPR027961 Protein of unknown function DUF4442 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 Gene3D G3DSA:1.10.1390.10 508 549 2.8E-17 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 Pfam PF00342 Phosphoglucose isomerase 51 543 5.8E-172 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 SUPERFAMILY SSF53697 11 547 1.78E-178 T 11-10-2018 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 Gene3D G3DSA:3.40.50.10490 14 507 9.0E-205 T 11-10-2018 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 498 515 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 Gene3D G3DSA:3.40.50.10490 97 292 9.0E-205 T 11-10-2018 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 45 525 39.118 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 339 360 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 466 484 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 498 511 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 484 498 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 146 165 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_00445 6e96d8c26456e56cf85586122bfde5d3 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 3.9E-52 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_09330 333a036102a38d2b4d70079004272b88 148 Pfam PF00583 Acetyltransferase (GNAT) family 51 137 2.4E-14 T 11-10-2018 IPR000182 GNAT domain AMD27_09330 333a036102a38d2b4d70079004272b88 148 Gene3D G3DSA:3.40.630.30 2 148 8.6E-35 T 11-10-2018 AMD27_09330 333a036102a38d2b4d70079004272b88 148 SUPERFAMILY SSF55729 7 137 1.28E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_05750 7a47b8d0fdd3ae27e099dae669dccb89 188 SUPERFAMILY SSF52374 9 168 2.75E-23 T 11-10-2018 AMD27_05750 7a47b8d0fdd3ae27e099dae669dccb89 188 Pfam PF01467 Cytidylyltransferase-like 9 63 8.0E-7 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_05750 7a47b8d0fdd3ae27e099dae669dccb89 188 Gene3D G3DSA:3.40.50.620 1 186 3.1E-52 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_05750 7a47b8d0fdd3ae27e099dae669dccb89 188 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 69 5.6E-10 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 93 103 8.8E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 194 206 8.8E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 264 281 8.8E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 49 60 8.8E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 Pfam PF13609 Gram-negative porin 12 322 4.0E-47 T 11-10-2018 AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 Gene3D G3DSA:2.40.160.10 23 356 1.6E-65 T 11-10-2018 IPR023614 Porin domain superfamily AMD27_07395 e6c05bba3a46a80dfc743155a0f59b58 356 SUPERFAMILY SSF56935 24 356 3.83E-56 T 11-10-2018 AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 Gene3D G3DSA:1.10.10.10 170 270 9.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 SUPERFAMILY SSF52980 11 168 6.97E-62 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 Gene3D G3DSA:3.40.1350.10 9 169 9.4E-66 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 SUPERFAMILY SSF46785 171 268 4.35E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 Pfam PF08721 TnsA endonuclease C terminal 169 248 4.7E-15 T 11-10-2018 IPR014832 TnsA endonuclease C-terminal AMD27_15645 2e0470f5977ae122ee1e5a6909f11d1b 277 Pfam PF08722 TnsA endonuclease N terminal 76 166 1.3E-25 T 11-10-2018 IPR014833 TnsA endonuclease, N-terminal AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 Gene3D G3DSA:3.10.129.10 1 130 1.2E-40 T 11-10-2018 AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 SUPERFAMILY SSF54637 2 129 2.19E-36 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 5 126 6.9E-47 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 Pfam PF03061 Thioesterase superfamily 19 101 1.4E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 117 2.4E-27 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMD27_10595 b4251b15aa5f690300441bfa1ea999e4 135 PIRSF PIRSF003230 1 135 2.2E-52 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 1.1E-97 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 Gene3D G3DSA:3.40.50.790 68 159 7.3E-76 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 Gene3D G3DSA:3.30.190.20 25 221 7.3E-76 T 11-10-2018 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 PIRSF PIRSF002155 1 227 9.7E-74 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 Pfam PF00687 Ribosomal protein L1p/L10e family 36 220 8.5E-50 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.582 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_01225 544c6ce2960e21b191cd0af77474c503 231 SUPERFAMILY SSF56808 6 226 3.4E-77 T 11-10-2018 IPR023674 Ribosomal protein L1-like AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 Gene3D G3DSA:3.10.580.10 196 322 1.3E-43 T 11-10-2018 AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 2.1E-102 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 PIRSF PIRSF004692 1 325 1.0E-131 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 SUPERFAMILY SSF53697 7 322 6.23E-65 T 11-10-2018 AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 Pfam PF00571 CBS domain 270 322 2.4E-11 T 11-10-2018 IPR000644 CBS domain AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 Pfam PF00571 CBS domain 201 258 9.3E-6 T 11-10-2018 IPR000644 CBS domain AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 Gene3D G3DSA:3.40.50.10490 4 195 2.2E-58 T 11-10-2018 AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 SMART SM00116 276 324 6.6E-7 T 11-10-2018 IPR000644 CBS domain AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 SMART SM00116 210 258 0.39 T 11-10-2018 IPR000644 CBS domain AMD27_06095 adae3e40f0cbce1d76c317b3d48f1994 325 Pfam PF01380 SIS domain 41 172 1.5E-24 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMD27_09305 521ebb57a98d9ba0fcdf7d5e3b4f726a 197 Gene3D G3DSA:3.40.30.10 3 197 1.1E-61 T 11-10-2018 AMD27_09305 521ebb57a98d9ba0fcdf7d5e3b4f726a 197 Pfam PF01323 DSBA-like thioredoxin domain 4 194 1.7E-44 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_09305 521ebb57a98d9ba0fcdf7d5e3b4f726a 197 SUPERFAMILY SSF52833 4 196 1.95E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_09305 521ebb57a98d9ba0fcdf7d5e3b4f726a 197 PIRSF PIRSF006386 1 197 1.4E-58 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_00255 df841371ebf25f6ae1a2b9f0bffb7a39 306 Gene3D G3DSA:3.20.20.370 16 254 9.1E-26 T 11-10-2018 AMD27_00255 df841371ebf25f6ae1a2b9f0bffb7a39 306 SUPERFAMILY SSF88713 19 250 2.38E-21 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMD27_00255 df841371ebf25f6ae1a2b9f0bffb7a39 306 Pfam PF01522 Polysaccharide deacetylase 22 136 1.1E-9 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMD27_05410 3104156130601f584acd961d13820fd3 407 SUPERFAMILY SSF103473 10 395 8.5E-54 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_05410 3104156130601f584acd961d13820fd3 407 Gene3D G3DSA:1.20.1250.20 16 393 1.2E-42 T 11-10-2018 AMD27_05410 3104156130601f584acd961d13820fd3 407 Pfam PF07690 Major Facilitator Superfamily 28 339 4.2E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_12615 2b2eaeb5c6d588caf7e846d8a0ccf6f3 222 Pfam PF07661 MORN repeat variant 112 131 0.046 T 11-10-2018 IPR011652 MORN variant AMD27_12615 2b2eaeb5c6d588caf7e846d8a0ccf6f3 222 SUPERFAMILY SSF82185 104 179 1.96E-10 T 11-10-2018 AMD27_12615 2b2eaeb5c6d588caf7e846d8a0ccf6f3 222 Gene3D G3DSA:3.90.930.1 103 214 2.0E-9 T 11-10-2018 AMD27_11875 7e5d9199bb487a1d0fda3c9262278669 285 PIRSF PIRSF038471 4 285 5.2E-64 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMD27_11875 7e5d9199bb487a1d0fda3c9262278669 285 Pfam PF04085 rod shape-determining protein MreC 125 271 9.1E-37 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMD27_11875 7e5d9199bb487a1d0fda3c9262278669 285 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 6 275 1.2E-48 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMD27_11875 7e5d9199bb487a1d0fda3c9262278669 285 Gene3D G3DSA:2.40.10.340 124 270 7.1E-36 T 11-10-2018 AMD27_11875 7e5d9199bb487a1d0fda3c9262278669 285 Gene3D G3DSA:2.40.10.350 182 259 7.1E-36 T 11-10-2018 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 15 628 42.085 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 SUPERFAMILY SSF52922 490 625 9.68E-28 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 SUPERFAMILY SSF52518 314 496 1.36E-58 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Gene3D G3DSA:3.40.50.920 500 631 2.4E-36 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 SMART SM00861 316 480 3.2E-70 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 18 625 2.5E-238 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Pfam PF02780 Transketolase, C-terminal domain 505 619 6.0E-26 T 11-10-2018 IPR033248 Transketolase, C-terminal domain AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Gene3D G3DSA:3.40.50.970 313 489 1.0E-68 T 11-10-2018 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 16 284 2.9E-105 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 Pfam PF02779 Transketolase, pyrimidine binding domain 316 475 2.2E-40 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMD27_14210 116e4df8ad1db19db2ad81f12922f4fa 634 SUPERFAMILY SSF52518 12 378 3.13E-75 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_09890 e55cc221227d7da37ec2cb0d1fc7e61b 285 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 40 4.2E-6 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative AMD27_09890 e55cc221227d7da37ec2cb0d1fc7e61b 285 Pfam PF11906 Protein of unknown function (DUF3426) 142 281 1.8E-12 T 11-10-2018 IPR021834 Protein of unknown function DUF3426 AMD27_11785 f7b8477c366bddfb3c848fa807ee8181 309 SUPERFAMILY SSF52151 39 288 1.44E-56 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMD27_11785 f7b8477c366bddfb3c848fa807ee8181 309 Gene3D G3DSA:3.40.1090.10 27 141 7.2E-25 T 11-10-2018 AMD27_11785 f7b8477c366bddfb3c848fa807ee8181 309 Pfam PF01734 Patatin-like phospholipase 46 201 4.3E-26 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 SUPERFAMILY SSF75625 3 246 1.7E-89 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 Gene3D G3DSA:3.30.70.980 130 204 3.9E-51 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 34.356 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 Gene3D G3DSA:1.10.10.200 1 81 5.8E-33 T 11-10-2018 IPR017856 Integrase-like, N-terminal AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 5.5E-94 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 Pfam PF01709 Transcriptional regulator 5 237 1.2E-89 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09475 58cb5b6adea8b3c7bd76af1f43864c8a 249 Gene3D G3DSA:3.30.70.980 85 236 3.9E-51 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_13030 e892467ae0d397578d23e374fc09e32a 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 3.4E-130 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 AMD27_13030 e892467ae0d397578d23e374fc09e32a 308 Gene3D G3DSA:3.30.470.10 7 133 7.9E-39 T 11-10-2018 AMD27_13030 e892467ae0d397578d23e374fc09e32a 308 Gene3D G3DSA:3.20.10.10 134 308 3.5E-54 T 11-10-2018 AMD27_13030 e892467ae0d397578d23e374fc09e32a 308 Pfam PF01063 Amino-transferase class IV 36 268 1.1E-52 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMD27_13030 e892467ae0d397578d23e374fc09e32a 308 SUPERFAMILY SSF56752 2 304 2.88E-102 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMD27_13645 d031b3dc0903017f87a3f6f7a3b79746 204 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 202 15.808 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMD27_13645 d031b3dc0903017f87a3f6f7a3b79746 204 Pfam PF04279 Intracellular septation protein A 1 201 2.0E-46 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Gene3D G3DSA:1.10.45.10 427 466 1.6E-13 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Gene3D G3DSA:3.30.70.2740 341 426 1.4E-26 T 11-10-2018 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Gene3D G3DSA:3.30.465.10 100 220 3.9E-39 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 SUPERFAMILY SSF55103 226 468 1.11E-60 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Gene3D G3DSA:3.30.70.2190 222 338 1.4E-26 T 11-10-2018 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Pfam PF01565 FAD binding domain 46 184 1.7E-39 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 466 6.7E-60 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 SUPERFAMILY SSF56176 4 222 1.68E-66 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMD27_01740 3cf72f8cb04504094960babe17fe1d99 469 Gene3D G3DSA:3.30.43.10 1 98 4.4E-26 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 SUPERFAMILY SSF82689 261 358 2.48E-17 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 Pfam PF00924 Mechanosensitive ion channel 150 349 2.7E-51 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 Gene3D G3DSA:3.30.70.100 260 355 3.6E-15 T 11-10-2018 AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 Gene3D G3DSA:2.30.30.60 208 259 6.4E-14 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 SUPERFAMILY SSF82861 110 191 1.57E-12 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMD27_13805 f8c0fa1a3c496a97e0b103b0043820b3 367 SUPERFAMILY SSF50182 193 258 5.56E-18 T 11-10-2018 IPR010920 LSM domain superfamily AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 SUPERFAMILY SSF56645 2 238 1.7E-78 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Gene3D G3DSA:1.20.140.10 232 377 1.9E-37 T 11-10-2018 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 121 133 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Gene3D G3DSA:2.40.110.10 118 231 3.6E-37 T 11-10-2018 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Gene3D G3DSA:1.10.540.10 1 117 1.9E-31 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 PIRSF PIRSF016578 24 377 8.3E-14 T 11-10-2018 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 374 9.8E-35 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 115 8.5E-31 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 333 352 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 213 2.0E-22 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_05635 1a11f175cea6b44075d8f1c153f220c7 377 SUPERFAMILY SSF47203 224 377 1.34E-40 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_01985 9f39be11a8106d55bf607dbc87775f21 61 SUPERFAMILY SSF54637 1 50 8.14E-6 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 Pfam PF01715 IPP transferase 41 291 4.1E-78 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 Gene3D G3DSA:3.40.50.300 11 295 1.4E-92 T 11-10-2018 AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 SUPERFAMILY SSF52540 6 214 1.2E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 294 1.4E-89 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 SUPERFAMILY SSF52540 8 151 7.98E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 Gene3D G3DSA:1.10.20.140 114 188 1.4E-92 T 11-10-2018 AMD27_09715 d0b105984703ab61aabbe52c86e3c1c9 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 307 29.131 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMD27_05160 b63f93c9086e5b4f51e9cf88ed60e827 307 Pfam PF10118 Predicted metal-dependent hydrolase 10 284 2.6E-65 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_05160 b63f93c9086e5b4f51e9cf88ed60e827 307 PIRSF PIRSF007580 2 304 1.5E-79 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_15540 a543ea395da79b562dd097ad1f3b946e 240 SUPERFAMILY SSF46689 29 107 1.18E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15540 a543ea395da79b562dd097ad1f3b946e 240 Gene3D G3DSA:1.10.357.10 84 222 3.7E-9 T 11-10-2018 AMD27_15540 a543ea395da79b562dd097ad1f3b946e 240 SUPERFAMILY SSF48498 109 211 1.22E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_15540 a543ea395da79b562dd097ad1f3b946e 240 Gene3D G3DSA:1.10.10.60 9 83 3.6E-10 T 11-10-2018 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 6 408 3.0E-117 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 SUPERFAMILY SSF81301 10 156 1.31E-35 T 11-10-2018 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Pfam PF01743 Poly A polymerase head domain 34 159 6.9E-31 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Gene3D G3DSA:3.30.460.10 2 155 8.8E-47 T 11-10-2018 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Pfam PF12626 Polymerase A arginine-rich C-terminus 296 408 1.4E-26 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 SUPERFAMILY SSF81891 157 384 3.01E-37 T 11-10-2018 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Gene3D G3DSA:1.10.3090.10 157 399 3.2E-67 T 11-10-2018 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 3 443 33.491 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AMD27_02650 d2d00929aeed0359f53b52fcad5847a8 490 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 186 247 4.0E-13 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMD27_02235 b166550e398e2fafd58bc54224366c8b 207 Pfam PF01618 MotA/TolQ/ExbB proton channel family 58 172 1.2E-32 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 461 468 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 1.1E-13 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 Gene3D G3DSA:1.10.10.60 423 481 3.0E-23 T 11-10-2018 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 PRINTS PR00045 Sigma-54 factor signature 193 210 1.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 PRINTS PR00045 Sigma-54 factor signature 382 394 1.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 PRINTS PR00045 Sigma-54 factor signature 398 409 1.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 PRINTS PR00045 Sigma-54 factor signature 456 474 1.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 480 9.4E-150 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 370 389 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 Gene3D G3DSA:1.10.10.1330 116 254 1.7E-21 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 Pfam PF04552 Sigma-54, DNA binding domain 323 480 9.7E-65 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 PIRSF PIRSF000774 1 482 1.4E-140 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMD27_03315 c27ee9848097a63dbfcadb74b61ac33f 483 Pfam PF04963 Sigma-54 factor, core binding domain 110 309 8.8E-53 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 SUPERFAMILY SSF52402 2 245 6.62E-56 T 11-10-2018 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 Gene3D G3DSA:2.40.30.10 284 375 6.9E-27 T 11-10-2018 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 367 38.643 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 Pfam PF03054 tRNA methyl transferase 3 366 1.9E-133 T 11-10-2018 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 Gene3D G3DSA:3.40.50.620 1 214 2.0E-89 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 Gene3D G3DSA:2.30.30.280 215 282 2.1E-24 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMD27_10545 15023e75fa11016edde1a1fabcd64e06 377 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 366 5.9E-132 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMD27_09990 d01a88c2593fb1529dbb7118b2ce7af9 180 Pfam PF14328 Domain of unknown function (DUF4385) 13 172 2.1E-49 T 11-10-2018 IPR025494 Protein of unknown function DUF4385 AMD27_01695 d5c41b8946c1c9416cf9c3a84bf907a8 326 Pfam PF00561 alpha/beta hydrolase fold 45 151 7.6E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_01695 d5c41b8946c1c9416cf9c3a84bf907a8 326 SUPERFAMILY SSF53474 41 321 9.39E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01695 d5c41b8946c1c9416cf9c3a84bf907a8 326 Gene3D G3DSA:3.40.50.1820 37 326 1.8E-79 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_11190 a11cb3982d80f078c8b588ce61bb0c23 252 SUPERFAMILY SSF102705 2 251 2.75E-74 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily AMD27_11190 a11cb3982d80f078c8b588ce61bb0c23 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 250 9.0E-60 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMD27_11190 a11cb3982d80f078c8b588ce61bb0c23 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 240 8.1E-59 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMD27_11190 a11cb3982d80f078c8b588ce61bb0c23 252 Gene3D G3DSA:3.40.1390.30 98 223 6.0E-78 T 11-10-2018 AMD27_11190 a11cb3982d80f078c8b588ce61bb0c23 252 Gene3D G3DSA:3.40.1390.30 7 240 6.0E-78 T 11-10-2018 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 Gene3D G3DSA:3.40.50.150 6 301 2.7E-103 T 11-10-2018 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 Pfam PF01795 MraW methylase family 2 301 1.4E-106 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 SUPERFAMILY SSF81799 111 207 1.18E-33 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 Gene3D G3DSA:1.10.150.170 110 209 2.7E-103 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 302 37.126 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 301 1.3E-107 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 SUPERFAMILY SSF53335 3 302 3.72E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14680 098d991cf7929e844ffba7a4b1cafe29 308 PIRSF PIRSF004486 1 303 2.5E-104 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 Pfam PF06969 HemN C-terminal domain 312 372 4.2E-8 T 11-10-2018 IPR010723 HemN, C-terminal AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 SUPERFAMILY SSF102114 10 384 1.7E-97 T 11-10-2018 AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 375 9.2E-113 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 Pfam PF04055 Radical SAM superfamily 15 185 2.3E-19 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 SMART SM00729 10 230 7.3E-51 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_14255 307b7268e511017c0c26ade89573e5ea 384 Gene3D G3DSA:3.80.30.20 2 311 2.9E-90 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMD27_04790 5295120ab3e79d23d340cb519f7cd229 410 Pfam PF07690 Major Facilitator Superfamily 23 361 1.1E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_04790 5295120ab3e79d23d340cb519f7cd229 410 SUPERFAMILY SSF103473 14 400 4.84E-57 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_04790 5295120ab3e79d23d340cb519f7cd229 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 87 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_04790 5295120ab3e79d23d340cb519f7cd229 410 Gene3D G3DSA:1.20.1720.10 17 392 1.6E-66 T 11-10-2018 AMD27_12020 8245c8194b3dc2f8f7363051d881a013 724 SUPERFAMILY SSF103473 374 536 3.66E-5 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_12020 8245c8194b3dc2f8f7363051d881a013 724 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 13 708 9.3E-243 T 11-10-2018 IPR010019 Integral membrane protein, YccS AMD27_12020 8245c8194b3dc2f8f7363051d881a013 724 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 13 708 1.7E-224 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK AMD27_12020 8245c8194b3dc2f8f7363051d881a013 724 Pfam PF13515 Fusaric acid resistance protein-like 410 530 7.3E-21 T 11-10-2018 AMD27_12020 8245c8194b3dc2f8f7363051d881a013 724 Pfam PF12805 FUSC-like inner membrane protein yccS 68 349 3.0E-91 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 SMART SM00283 425 686 5.3E-88 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 SUPERFAMILY SSF58104 385 687 2.27E-68 T 11-10-2018 AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 654 1.1E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 Gene3D G3DSA:1.10.287.950 362 688 2.3E-63 T 11-10-2018 AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 552 581 1.4E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMD27_12120 d66ce35bc10d54f85da02feb0af45532 689 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 439 468 1.4E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMD27_14515 5530440ec470c169c46230c5dbc6d735 471 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 255 470 7.7E-79 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related AMD27_14515 5530440ec470c169c46230c5dbc6d735 471 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 18 222 7.2E-22 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related AMD27_14515 5530440ec470c169c46230c5dbc6d735 471 SUPERFAMILY SSF52540 280 466 5.83E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14515 5530440ec470c169c46230c5dbc6d735 471 Gene3D G3DSA:3.40.50.300 2 224 5.4E-40 T 11-10-2018 AMD27_14515 5530440ec470c169c46230c5dbc6d735 471 Gene3D G3DSA:3.40.50.300 236 471 2.7E-89 T 11-10-2018 AMD27_00370 c3a49579f04ced2a91401fd4c0566aa2 302 Gene3D G3DSA:3.40.50.720 3 287 2.6E-105 T 11-10-2018 AMD27_00370 c3a49579f04ced2a91401fd4c0566aa2 302 Gene3D G3DSA:3.90.25.10 164 294 2.6E-105 T 11-10-2018 AMD27_00370 c3a49579f04ced2a91401fd4c0566aa2 302 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 299 2.2E-93 T 11-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMD27_00370 c3a49579f04ced2a91401fd4c0566aa2 302 SUPERFAMILY SSF51735 1 300 4.89E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00370 c3a49579f04ced2a91401fd4c0566aa2 302 Pfam PF04321 RmlD substrate binding domain 1 300 1.1E-99 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMD27_15045 1c02d4e9a812d27d0b4a25a6c919d9da 571 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMD27_15045 1c02d4e9a812d27d0b4a25a6c919d9da 571 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 489 1.9E-60 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_15045 1c02d4e9a812d27d0b4a25a6c919d9da 571 Pfam PF00474 Sodium:solute symporter family 68 489 2.0E-111 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_15045 1c02d4e9a812d27d0b4a25a6c919d9da 571 Gene3D G3DSA:1.20.1730.10 56 568 1.5E-60 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 Gene3D G3DSA:3.40.190.10 110 299 4.4E-36 T 11-10-2018 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 5.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 5.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 5.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 Gene3D G3DSA:3.40.190.10 182 275 4.4E-36 T 11-10-2018 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 SUPERFAMILY SSF53850 108 301 3.8E-24 T 11-10-2018 AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 Pfam PF03466 LysR substrate binding domain 108 286 9.7E-10 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 Gene3D G3DSA:1.10.10.10 13 100 5.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 SUPERFAMILY SSF46785 16 96 1.14E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_08160 d24fb6e6a4808aa68504edfd1fd6059b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 79 5.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_09595 687d6bc68331ae5ba232366ebbaed96f 375 Gene3D G3DSA:3.90.226.10 13 354 3.9E-89 T 11-10-2018 AMD27_09595 687d6bc68331ae5ba232366ebbaed96f 375 Pfam PF16113 Enoyl-CoA hydratase/isomerase 24 342 6.9E-85 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMD27_09595 687d6bc68331ae5ba232366ebbaed96f 375 SUPERFAMILY SSF52096 13 342 1.91E-52 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 SUPERFAMILY SSF52540 141 339 5.05E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 192 206 1.5E-48 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 258 285 1.5E-48 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 160 180 1.5E-48 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 224 238 1.5E-48 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 420 439 1.5E-48 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Pfam PF00308 Bacterial dnaA protein 126 344 1.1E-82 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Gene3D G3DSA:3.40.50.300 125 292 8.2E-45 T 11-10-2018 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 372 439 5.3E-28 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 ProSitePatterns PS01008 DnaA protein signature. 420 439 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 3 459 7.9E-154 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Pfam PF11638 DnaA N-terminal domain 2 60 3.5E-13 T 11-10-2018 IPR024633 DnaA N-terminal domain AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Gene3D G3DSA:3.30.300.180 1 108 4.2E-19 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 461 29.494 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 SUPERFAMILY SSF48295 359 461 4.45E-33 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Gene3D G3DSA:1.10.8.60 293 363 8.2E-22 T 11-10-2018 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 SMART SM00382 159 289 3.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 SMART SM00760 370 439 1.0E-37 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMD27_00005 6f39df2baaf836db16aef77ce552c3dc 462 Gene3D G3DSA:1.10.1750.10 369 462 1.0E-31 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMD27_15870 f63a2c036ea210551b3a39f717e9a56b 269 SMART SM00382 59 236 1.7E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15870 f63a2c036ea210551b3a39f717e9a56b 269 Pfam PF00005 ABC transporter 50 186 2.5E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_15870 f63a2c036ea210551b3a39f717e9a56b 269 Gene3D G3DSA:3.40.50.300 34 267 2.0E-63 T 11-10-2018 AMD27_15870 f63a2c036ea210551b3a39f717e9a56b 269 SUPERFAMILY SSF52540 35 256 4.0E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15870 f63a2c036ea210551b3a39f717e9a56b 269 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 8.3E-21 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 643 52.064 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Gene3D G3DSA:3.40.50.12780 48 513 2.8E-109 T 11-10-2018 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 18 641 0.0 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 SUPERFAMILY SSF56801 11 642 1.13E-188 T 11-10-2018 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Pfam PF00501 AMP-binding enzyme 81 520 1.3E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 259 270 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 529 607 1.4E-25 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_15195 8df811a64dcc37ee59e6870e9c5e7787 648 Gene3D G3DSA:3.30.300.30 516 647 9.1E-31 T 11-10-2018 AMD27_06465 ab977b89a12f1430c309cd06cba20efb 139 Gene3D G3DSA:2.170.150.20 2 139 9.1E-64 T 11-10-2018 AMD27_06465 ab977b89a12f1430c309cd06cba20efb 139 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 137 1.3E-59 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMD27_06465 ab977b89a12f1430c309cd06cba20efb 139 SUPERFAMILY SSF51316 5 138 3.66E-60 T 11-10-2018 IPR011057 Mss4-like superfamily AMD27_06465 ab977b89a12f1430c309cd06cba20efb 139 Pfam PF01641 SelR domain 10 128 1.8E-56 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMD27_06465 ab977b89a12f1430c309cd06cba20efb 139 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 38.128 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 SMART SM00481 4 71 6.1E-12 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 SUPERFAMILY SSF160975 821 873 6.54E-5 T 11-10-2018 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 988 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 1108 1119 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Pfam PF02811 PHP domain 5 162 1.8E-26 T 11-10-2018 IPR004013 PHP domain GO:0003824 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 SUPERFAMILY SSF89550 3 254 2.75E-13 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Gene3D G3DSA:1.10.10.1600 428 511 1.6E-25 T 11-10-2018 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Gene3D G3DSA:1.10.150.870 762 877 2.4E-5 T 11-10-2018 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 284 725 2.0E-165 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Pfam PF14579 Helix-hairpin-helix motif 799 888 4.9E-26 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_06445 87ffccfe8114d7845d9292ddd252a787 1189 Gene3D G3DSA:3.20.20.140 1 261 2.9E-76 T 11-10-2018 AMD27_01370 8555c5ce40fd5422ee6789c66bdd863f 195 PIRSF PIRSF000847 4 195 7.1E-47 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMD27_01370 8555c5ce40fd5422ee6789c66bdd863f 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMD27_01370 8555c5ce40fd5422ee6789c66bdd863f 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 193 5.3E-53 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMD27_01370 8555c5ce40fd5422ee6789c66bdd863f 195 Gene3D G3DSA:1.20.120.1760 5 188 2.3E-13 T 11-10-2018 AMD27_01370 8555c5ce40fd5422ee6789c66bdd863f 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 85 1.4E-17 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMD27_07020 101e21516d9e6002c8ff818bd300dfd4 194 Pfam PF00959 Phage lysozyme 73 183 3.8E-23 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMD27_07020 101e21516d9e6002c8ff818bd300dfd4 194 SUPERFAMILY SSF53955 43 192 3.73E-51 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_07020 101e21516d9e6002c8ff818bd300dfd4 194 Gene3D G3DSA:1.10.530.40 33 191 1.7E-55 T 11-10-2018 AMD27_00215 5c230e93ab7d4f7ef489afcefd317e59 437 Pfam PF00860 Permease family 30 401 7.2E-93 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMD27_00215 5c230e93ab7d4f7ef489afcefd317e59 437 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 27 422 5.4E-105 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 PIRSF PIRSF000239 1 187 3.0E-55 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.2E-104 T 11-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 Pfam PF00578 AhpC/TSA family 6 132 9.2E-36 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 SUPERFAMILY SSF52833 3 186 8.92E-60 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 Gene3D G3DSA:3.40.30.10 1 186 7.5E-66 T 11-10-2018 AMD27_06050 3ba1bab37cbe7630241b8ca35ad52527 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 2.3E-6 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_12745 95550967ff1ac307c3995467a0452480 265 SMART SM00671 203 238 0.24 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_12745 95550967ff1ac307c3995467a0452480 265 SMART SM00671 92 128 9.3E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_12745 95550967ff1ac307c3995467a0452480 265 SMART SM00671 56 91 1.8E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_12745 95550967ff1ac307c3995467a0452480 265 SUPERFAMILY SSF81901 36 167 6.8E-18 T 11-10-2018 AMD27_12745 95550967ff1ac307c3995467a0452480 265 SUPERFAMILY SSF81901 149 241 2.09E-5 T 11-10-2018 AMD27_12745 95550967ff1ac307c3995467a0452480 265 Gene3D G3DSA:1.25.40.10 24 171 2.2E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_12745 95550967ff1ac307c3995467a0452480 265 Gene3D G3DSA:1.25.40.10 191 263 1.4E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_12745 95550967ff1ac307c3995467a0452480 265 Pfam PF08238 Sel1 repeat 93 127 8.3E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_12745 95550967ff1ac307c3995467a0452480 265 Pfam PF08238 Sel1 repeat 56 91 3.3E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_12745 95550967ff1ac307c3995467a0452480 265 Pfam PF08238 Sel1 repeat 205 236 110.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_03000 d0b7e18846dcd0470ca265fc1eb1e6a2 322 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 321 32.798 T 11-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 AMD27_03000 d0b7e18846dcd0470ca265fc1eb1e6a2 322 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 320 4.3E-120 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMD27_03000 d0b7e18846dcd0470ca265fc1eb1e6a2 322 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 29 316 4.8E-103 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMD27_03000 d0b7e18846dcd0470ca265fc1eb1e6a2 322 Gene3D G3DSA:3.40.718.10 2 322 7.8E-117 T 11-10-2018 AMD27_03000 d0b7e18846dcd0470ca265fc1eb1e6a2 322 SUPERFAMILY SSF53659 4 321 2.54E-101 T 11-10-2018 AMD27_13145 4170e44580e9aefeb00acbd736e737c7 180 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 97 2.3E-14 T 11-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 AMD27_13145 4170e44580e9aefeb00acbd736e737c7 180 Gene3D G3DSA:2.40.50.230 3 86 1.6E-20 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_13145 4170e44580e9aefeb00acbd736e737c7 180 Pfam PF04717 Type VI secretion system, phage-baseplate injector 6 99 1.9E-20 T 11-10-2018 IPR006531 Gp5 N-terminal AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 SUPERFAMILY SSF52540 259 499 1.59E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 3 178 5.5E-22 T 11-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 Pfam PF04851 Type III restriction enzyme, res subunit 286 458 7.3E-21 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 SUPERFAMILY SSF52540 308 727 5.65E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 Gene3D G3DSA:3.90.1570.50 55 213 8.0E-15 T 11-10-2018 AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 Gene3D G3DSA:3.40.50.300 286 477 5.6E-37 T 11-10-2018 AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 Gene3D G3DSA:3.40.50.300 478 709 7.8E-26 T 11-10-2018 AMD27_15690 2d5aef57467df0c2a80443635824a017 1019 SMART SM00487 283 490 1.2E-4 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 SUPERFAMILY SSF69255 446 539 1.75E-23 T 11-10-2018 AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Gene3D G3DSA:3.30.1920.30 258 340 1.0E-46 T 11-10-2018 AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Gene3D G3DSA:2.30.110.50 35 386 1.0E-46 T 11-10-2018 AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 39 595 1.2E-52 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 SUPERFAMILY SSF69279 28 201 7.37E-40 T 11-10-2018 AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 704 852 1.0E-42 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 29 590 1.3E-67 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Gene3D G3DSA:2.40.50.230 437 545 1.1E-30 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Gene3D G3DSA:3.55.50.10 115 225 1.0E-46 T 11-10-2018 AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 568 675 1.2E-35 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_14405 209db7812e9d02782fdfedd6c931a546 936 Pfam PF05954 Phage late control gene D protein (GPD) 47 389 2.9E-63 T 11-10-2018 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 PIRSF PIRSF001348 1 609 2.6E-264 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 18 237 4.9E-98 T 11-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Gene3D G3DSA:3.90.228.20 241 600 1.4E-255 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Gene3D G3DSA:3.40.449.10 17 240 1.4E-255 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 SUPERFAMILY SSF53795 241 606 7.33E-154 T 11-10-2018 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 SUPERFAMILY SSF68923 4 240 1.31E-95 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Gene3D G3DSA:2.170.8.10 53 394 1.4E-255 T 11-10-2018 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 6 607 49.805 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 241 603 5.6E-166 T 11-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMD27_11515 8c339c08f7110a67423f6337a6736f6d 609 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 265 273 - T 11-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMD27_12755 b45dcb51a5363ac6336cf179b271b7b8 369 SUPERFAMILY SSF51395 1 361 3.97E-112 T 11-10-2018 AMD27_12755 b45dcb51a5363ac6336cf179b271b7b8 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 341 2.6E-72 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMD27_12755 b45dcb51a5363ac6336cf179b271b7b8 369 Gene3D G3DSA:3.20.20.70 1 358 2.5E-121 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_01630 4183302f5ead5f7a14af383b618d7c14 159 SUPERFAMILY SSF54523 1 101 4.32E-9 T 11-10-2018 AMD27_01630 4183302f5ead5f7a14af383b618d7c14 159 Gene3D G3DSA:3.30.700.10 1 122 5.4E-8 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 332 356 2.4E-23 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 200 216 2.4E-23 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 226 240 2.4E-23 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 296 308 2.4E-23 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 SUPERFAMILY SSF53335 7 516 1.04E-130 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 299 305 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 7 501 6.7E-139 T 11-10-2018 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 Gene3D G3DSA:3.40.50.150 198 475 6.2E-86 T 11-10-2018 AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 Gene3D G3DSA:1.20.1260.30 1 194 3.6E-55 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 Pfam PF12161 HsdM N-terminal domain 9 164 1.1E-20 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AMD27_03765 b2250c3aa4202c6338e4876f0e8fa19e 523 Pfam PF02384 N-6 DNA Methylase 176 481 1.3E-110 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 Pfam PF00589 Phage integrase family 220 383 5.1E-15 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 Gene3D G3DSA:3.30.160.390 1 87 1.1E-28 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 Pfam PF13356 Arm DNA-binding domain 2 86 2.7E-17 T 11-10-2018 IPR025166 Integrase, DNA-binding domain AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 SUPERFAMILY SSF56349 98 394 3.83E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 Gene3D G3DSA:1.10.150.130 88 211 3.1E-16 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_07065 eadb0555c8495e454c2fb2b9a99b626e 403 Gene3D G3DSA:1.10.443.10 213 398 4.4E-13 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 32.939 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 Gene3D G3DSA:3.40.50.720 3 356 5.2E-139 T 11-10-2018 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 121 2.3E-22 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 SUPERFAMILY SSF55347 134 354 2.5E-76 T 11-10-2018 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 353 1.9E-56 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 SUPERFAMILY SSF51735 1 147 4.26E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 Gene3D G3DSA:3.30.360.10 135 350 5.2E-139 T 11-10-2018 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 367 3.1E-191 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 PIRSF PIRSF000148 1 371 1.5E-66 T 11-10-2018 AMD27_02060 98d8e59a3668b0c1f71826c040e18bef 372 SMART SM00859 2 122 1.4E-25 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMD27_14120 ce5adb61dc68045cb4e4adcaa69fb2df 314 Pfam PF10118 Predicted metal-dependent hydrolase 21 290 6.1E-67 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_14120 ce5adb61dc68045cb4e4adcaa69fb2df 314 PIRSF PIRSF007580 6 310 1.2E-82 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 SUPERFAMILY SSF53328 2 187 4.45E-59 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 Gene3D G3DSA:3.10.25.10 214 317 3.1E-25 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 Pfam PF00551 Formyl transferase 2 185 2.3E-46 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 SUPERFAMILY SSF50486 212 319 4.87E-26 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 314 34.723 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 Gene3D G3DSA:3.40.50.170 1 213 3.5E-74 T 11-10-2018 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 312 4.1E-90 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMD27_00160 2e3349e0df0110e528fbd608958b10bb 320 Pfam PF02911 Formyl transferase, C-terminal domain 211 308 9.9E-22 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_02765 19bf9aa18850a75369d257a034427550 182 Gene3D G3DSA:1.10.357.40 25 182 6.2E-41 T 11-10-2018 IPR037238 YbiA-like superfamily AMD27_02765 19bf9aa18850a75369d257a034427550 182 SUPERFAMILY SSF143990 11 182 2.62E-51 T 11-10-2018 IPR037238 YbiA-like superfamily AMD27_02765 19bf9aa18850a75369d257a034427550 182 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 25 182 1.0E-50 T 11-10-2018 IPR012816 NADAR AMD27_02765 19bf9aa18850a75369d257a034427550 182 Pfam PF08719 Domain of unknown function (DUF1768) 34 182 2.7E-51 T 11-10-2018 IPR012816 NADAR AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 863 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 SUPERFAMILY SSF52016 162 374 3.34E-63 T 11-10-2018 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 PIRSF PIRSF036687 1 868 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 ProSitePatterns PS01244 Aconitase family signature 2. 770 783 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Gene3D G3DSA:3.30.499.10 407 534 5.0E-143 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 SUPERFAMILY SSF74778 2 160 2.75E-67 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Gene3D G3DSA:3.30.499.10 691 874 4.0E-67 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Gene3D G3DSA:1.25.40.310 1 161 2.2E-67 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Pfam PF11791 Aconitate B N-terminal domain 4 156 1.2E-65 T 11-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Pfam PF00330 Aconitase family (aconitate hydratase) 477 827 2.8E-38 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 SUPERFAMILY SSF53732 381 865 3.4E-141 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 384 1.6E-90 T 11-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Gene3D G3DSA:3.40.1060.10 387 689 5.0E-143 T 11-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_09780 4ac52d6442012ac28ff7b7027a7d834b 879 Gene3D G3DSA:3.20.19.10 162 363 1.4E-71 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMD27_13900 077e0d73d404207ea5ef21f60759a7fe 679 Pfam PF01432 Peptidase family M3 221 670 3.6E-141 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMD27_13900 077e0d73d404207ea5ef21f60759a7fe 679 Gene3D G3DSA:1.10.1370.10 140 604 2.1E-234 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMD27_13900 077e0d73d404207ea5ef21f60759a7fe 679 SUPERFAMILY SSF55486 9 671 1.0E-177 T 11-10-2018 AMD27_13900 077e0d73d404207ea5ef21f60759a7fe 679 Gene3D G3DSA:1.10.1370.40 12 669 2.1E-234 T 11-10-2018 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 Gene3D G3DSA:1.10.10.10 1 94 1.2E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 SUPERFAMILY SSF46785 1 86 1.18E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 SUPERFAMILY SSF53850 93 292 6.36E-30 T 11-10-2018 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 Pfam PF03466 LysR substrate binding domain 89 291 3.8E-33 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.9E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 Gene3D G3DSA:3.40.190.10 163 267 7.2E-45 T 11-10-2018 AMD27_01920 fa18450a3b34fb5cffa40f857086b558 303 Gene3D G3DSA:3.40.190.10 95 291 7.2E-45 T 11-10-2018 AMD27_11645 2843a673d6d9233952cb1151994540e1 148 SUPERFAMILY SSF52402 3 146 3.85E-39 T 11-10-2018 AMD27_11645 2843a673d6d9233952cb1151994540e1 148 PRINTS PR01438 Universal stress protein signature 3 21 1.1E-17 T 11-10-2018 IPR006015 Universal stress protein A AMD27_11645 2843a673d6d9233952cb1151994540e1 148 PRINTS PR01438 Universal stress protein signature 105 117 1.1E-17 T 11-10-2018 IPR006015 Universal stress protein A AMD27_11645 2843a673d6d9233952cb1151994540e1 148 PRINTS PR01438 Universal stress protein signature 123 145 1.1E-17 T 11-10-2018 IPR006015 Universal stress protein A AMD27_11645 2843a673d6d9233952cb1151994540e1 148 Gene3D G3DSA:3.40.50.620 1 147 1.2E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11645 2843a673d6d9233952cb1151994540e1 148 Pfam PF00582 Universal stress protein family 3 145 1.1E-29 T 11-10-2018 IPR006016 UspA AMD27_11645 2843a673d6d9233952cb1151994540e1 148 PIRSF PIRSF006276 1 148 3.8E-21 T 11-10-2018 IPR006015 Universal stress protein A AMD27_09645 d53391a54b767c4bd955e749a6bd48c4 327 Gene3D G3DSA:3.40.50.300 7 171 3.0E-46 T 11-10-2018 AMD27_09645 d53391a54b767c4bd955e749a6bd48c4 327 SUPERFAMILY SSF52540 10 211 9.02E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09645 d53391a54b767c4bd955e749a6bd48c4 327 Pfam PF13177 DNA polymerase III, delta subunit 26 173 4.9E-39 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2376 2544 4.9E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 3218 3385 1.2E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 3386 3553 5.5E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 1703 1871 5.0E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 361 537 3.9E-9 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 1872 2039 1.0E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 1365 1534 5.9E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2882 3049 1.2E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 1535 1702 4.4E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2545 2712 4.9E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 3554 3722 1.4E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2713 2881 3.4E-17 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2208 2375 1.4E-13 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 3050 3217 6.5E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 2040 2207 5.3E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 3723 3847 1.7E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 SUPERFAMILY SSF101967 177 359 2.22E-21 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 SUPERFAMILY SSF101967 2447 2542 1.57E-5 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 SUPERFAMILY SSF101967 1774 1869 1.29E-5 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 SUPERFAMILY SSF101967 3457 3552 1.7E-5 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:1.20.5.170 854 879 2.2E-6 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:1.20.5.170 685 710 2.2E-6 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:1.20.5.170 1016 1041 2.2E-6 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Gene3D G3DSA:2.150.10.10 227 360 2.0E-23 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 SUPERFAMILY SSF101967 2784 2879 7.06E-6 T 11-10-2018 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 3361 3401 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2351 2391 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 847 891 2.6E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1510 1550 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 3193 3233 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2520 2560 7.1E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 678 722 2.6E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2015 2055 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1009 1053 2.6E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2857 2897 7.1E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1678 1718 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 335 373 3.2E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2688 2728 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1847 1887 7.1E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 3025 3065 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 3698 3738 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 2183 2223 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1342 1382 6.4E-4 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 3530 3570 7.1E-5 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 509 553 2.6E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_00165 6c2544754b4898a98db915fd671572c1 3847 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 8.9E-13 T 11-10-2018 IPR024973 ESPR domain AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 Gene3D G3DSA:1.20.1250.20 18 439 4.1E-67 T 11-10-2018 AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 SUPERFAMILY SSF103473 18 432 3.01E-63 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 Pfam PF00083 Sugar (and other) transporter 28 219 1.4E-28 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_11520 288c3199a7b0a04fa90e8f12f59cf662 439 Pfam PF00083 Sugar (and other) transporter 229 434 3.6E-11 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 Gene3D G3DSA:3.20.20.70 18 230 1.1E-35 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 PIRSF PIRSF000370 16 236 4.2E-64 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 233 35.72 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 SUPERFAMILY SSF102114 41 119 2.62E-14 T 11-10-2018 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 Pfam PF13394 4Fe-4S single cluster domain 39 120 1.2E-11 T 11-10-2018 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 Pfam PF04055 Radical SAM superfamily 42 131 1.7E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_05780 92871784abb18d6d6f6d0affd116904d 236 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 236 6.7E-99 T 11-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 SUPERFAMILY SSF47203 239 393 4.03E-33 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 Gene3D G3DSA:1.10.540.10 1 129 7.0E-6 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 Gene3D G3DSA:2.40.110.10 130 245 4.6E-35 T 11-10-2018 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 390 8.5E-39 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 224 9.6E-22 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 SUPERFAMILY SSF56645 7 252 2.49E-43 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_08700 21723fe4083dfccb9c66566a2fc24925 399 Gene3D G3DSA:1.20.140.10 246 396 2.9E-32 T 11-10-2018 AMD27_13515 9268da0754978566207db4482f085fc9 338 SUPERFAMILY SSF51735 1 182 3.95E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_13515 9268da0754978566207db4482f085fc9 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 2.3E-130 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 Gene3D G3DSA:3.40.50.720 1 181 8.4E-78 T 11-10-2018 AMD27_13515 9268da0754978566207db4482f085fc9 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 3.8E-75 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 Gene3D G3DSA:1.10.3730.40 182 338 2.3E-71 T 11-10-2018 AMD27_13515 9268da0754978566207db4482f085fc9 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.758 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 PIRSF PIRSF000116 201 333 1.1E-13 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 PIRSF PIRSF000116 3 205 1.1E-51 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 2.2E-59 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMD27_13515 9268da0754978566207db4482f085fc9 338 SUPERFAMILY SSF48179 183 332 8.33E-66 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_04525 f9e058ccdaedd325c210082feb576b74 339 Gene3D G3DSA:1.25.40.10 39 260 2.5E-49 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04525 f9e058ccdaedd325c210082feb576b74 339 SUPERFAMILY SSF48452 43 128 8.76E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04525 f9e058ccdaedd325c210082feb576b74 339 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 251 34.765 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMD27_04525 f9e058ccdaedd325c210082feb576b74 339 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 10 253 1.0E-76 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMD27_04525 f9e058ccdaedd325c210082feb576b74 339 Pfam PF13525 Outer membrane lipoprotein 40 242 7.4E-59 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like AMD27_15005 76575435d07edd502c311f7de343deb6 287 Pfam PF13612 Transposase DDE domain 103 258 3.1E-62 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_15770 fc2a053a8f2a92c780aee57222884a17 150 PIRSF PIRSF006173 1 150 1.7E-61 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMD27_15770 fc2a053a8f2a92c780aee57222884a17 150 Pfam PF03692 Putative zinc- or iron-chelating domain 27 94 8.4E-7 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMD27_15770 fc2a053a8f2a92c780aee57222884a17 150 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 5 150 35.874 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMD27_07365 4137158cb5307609302f7db75ac57803 582 SUPERFAMILY SSF53474 6 280 3.57E-35 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07365 4137158cb5307609302f7db75ac57803 582 SUPERFAMILY SSF53335 389 571 3.91E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_07365 4137158cb5307609302f7db75ac57803 582 Pfam PF12147 Putative methyltransferase 273 581 6.2E-145 T 11-10-2018 IPR022744 Methyltransferase domain, putative AMD27_07365 4137158cb5307609302f7db75ac57803 582 Pfam PF12146 Serine aminopeptidase, S33 30 265 6.4E-65 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_07365 4137158cb5307609302f7db75ac57803 582 Gene3D G3DSA:3.40.50.150 341 582 1.5E-16 T 11-10-2018 AMD27_07365 4137158cb5307609302f7db75ac57803 582 Gene3D G3DSA:3.40.50.1820 1 284 1.1E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 97 114 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 71 79 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 40 61 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 27 34 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 171 188 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 128 142 8.0E-24 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 21 267 27.468 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 Gene3D G3DSA:3.40.1190.20 3 274 8.4E-80 T 11-10-2018 IPR029056 Ribokinase-like AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 PIRSF PIRSF000513 13 275 7.3E-75 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 SUPERFAMILY SSF53613 14 273 1.44E-51 T 11-10-2018 IPR029056 Ribokinase-like AMD27_09240 7813d53e6d7fba1cc5eccef8ea840853 276 Pfam PF02110 Hydroxyethylthiazole kinase family 20 264 3.1E-65 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMD27_03970 404ffeac5bd8ddeaec8c6c9fe5538554 407 Gene3D G3DSA:1.20.1250.20 7 198 2.6E-31 T 11-10-2018 AMD27_03970 404ffeac5bd8ddeaec8c6c9fe5538554 407 SUPERFAMILY SSF103473 5 406 2.62E-67 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_03970 404ffeac5bd8ddeaec8c6c9fe5538554 407 Pfam PF07690 Major Facilitator Superfamily 18 369 6.1E-47 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_03970 404ffeac5bd8ddeaec8c6c9fe5538554 407 Gene3D G3DSA:1.20.1250.20 217 406 1.9E-31 T 11-10-2018 AMD27_16040 09c07d7e691f535c4ea8034f47448571 305 Pfam PF00413 Matrixin 43 299 1.1E-11 T 11-10-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 AMD27_16040 09c07d7e691f535c4ea8034f47448571 305 SUPERFAMILY SSF55486 217 299 6.26E-15 T 11-10-2018 AMD27_16040 09c07d7e691f535c4ea8034f47448571 305 Gene3D G3DSA:3.40.390.10 137 303 1.5E-14 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMD27_00685 2428a86539d3f195757f24a30fc0dc05 125 Gene3D G3DSA:3.10.450.160 47 125 1.5E-12 T 11-10-2018 AMD27_00685 2428a86539d3f195757f24a30fc0dc05 125 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 68 122 9.0E-10 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_00685 2428a86539d3f195757f24a30fc0dc05 125 Pfam PF11776 Nickel/cobalt transporter regulator 71 120 1.6E-11 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_07350 9af51b6e2b33b87031c72d8911bcb5f7 232 SMART SM00563 58 180 9.3E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_07350 9af51b6e2b33b87031c72d8911bcb5f7 232 Pfam PF01553 Acyltransferase 57 178 1.7E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_07350 9af51b6e2b33b87031c72d8911bcb5f7 232 SUPERFAMILY SSF69593 39 230 1.31E-28 T 11-10-2018 AMD27_07270 d59d8c4b93234e40685c5402594cf1a0 174 SUPERFAMILY SSF52799 8 135 2.21E-15 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_07270 d59d8c4b93234e40685c5402594cf1a0 174 Gene3D G3DSA:3.90.190.10 3 155 2.4E-32 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 SUPERFAMILY SSF46557 4 77 1.31E-25 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 71 4.8E-29 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 31.935 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 PIRSF PIRSF006092 1 158 4.3E-51 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 9.1E-30 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 SUPERFAMILY SSF54534 82 157 1.27E-24 T 11-10-2018 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 Gene3D G3DSA:1.10.287.180 1 75 2.9E-28 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 9.0E-57 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMD27_11615 0510e7ccc4ec33f4e410f8878510ac1b 158 Gene3D G3DSA:3.10.50.30 76 158 2.7E-32 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Gene3D G3DSA:2.160.20.10 87 386 5.3E-100 T 11-10-2018 IPR012334 Pectin lyase fold AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF14424 The BURPS668_1122 family of deaminases 4147 4279 1.3E-29 T 11-10-2018 IPR032721 Deaminases, BURPS668_1122 family AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 SUPERFAMILY SSF56954 3231 3306 8.24E-6 T 11-10-2018 AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF13332 Haemagluttinin repeat 3322 3484 1.6E-21 T 11-10-2018 IPR025157 Hemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF13332 Haemagluttinin repeat 3070 3206 7.5E-6 T 11-10-2018 IPR025157 Hemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 567 597 0.42 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 659 697 0.06 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1127 1165 8.3E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1628 1666 2.1E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1456 1495 7.0E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1647 1678 0.0043 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 618 645 0.34 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1028 1061 2.7E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1524 1558 0.0059 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1539 1578 0.0062 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1188 1228 1.6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1414 1455 0.097 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 923 952 0.014 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1748 1778 0.066 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 835 870 3.9E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1586 1615 9.9E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 879 902 0.1 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1679 1710 2.8 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1373 1413 2.8E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1230 1268 0.82 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1559 1585 0.46 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1291 1331 0.0059 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1333 1371 1.9E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 390 429 0.48 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1497 1538 0.013 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1804 1834 0.047 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1167 1206 3.2E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1270 1306 2.4E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1085 1125 1.2E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1044 1084 0.0016 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 436 457 0.24 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 416 440 0.31 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 985 1021 9.9E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 SMART SM00912 100 220 1.1E-48 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1320 1384 0.26 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 927 1000 110.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1034 1082 7.2E-4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1621 1678 86.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 782 852 87.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1827 1905 0.29 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 270 350 40.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1445 1508 0.0046 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 2611 2651 190.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1936 1995 150.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1117 1186 5.2E-4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 2734 2774 180.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 380 440 0.14 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 616 644 5.4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1525 1579 0.84 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 661 715 1.8 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF05594 Haemagluttinin repeat 1220 1289 0.017 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 25 3.2E-7 T 11-10-2018 IPR024973 ESPR domain AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 SUPERFAMILY SSF51126 89 373 5.96E-64 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMD27_11000 d5cc84723e3626594d048f90ec16a8e1 4289 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 119 214 6.6E-23 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal AMD27_17060 ecad257ce47b7f78f4224628efa9afaf 266 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 111 137 1.4E-4 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AMD27_01635 5e194af0f2f05ee3a5d3f20aa93c651a 164 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 5 133 3.3E-26 T 11-10-2018 IPR013362 Pilus modification type IV, PilV AMD27_01635 5e194af0f2f05ee3a5d3f20aa93c651a 164 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 26 1.1E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01635 5e194af0f2f05ee3a5d3f20aa93c651a 164 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 3.1E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 SMART SM00562 3 140 1.3E-82 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.0E-54 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 SUPERFAMILY SSF54919 1 139 2.1E-55 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.938 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.5E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.5E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.5E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.5E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.5E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_13475 9d4ccf6ab1bf87b15d10eec213b66684 143 Gene3D G3DSA:3.30.70.141 1 143 1.4E-58 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMD27_15555 04c4b1e65bdb863e44eef443cd3d7036 282 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 15 282 42.908 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMD27_15555 04c4b1e65bdb863e44eef443cd3d7036 282 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 54 280 2.2E-68 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMD27_15555 04c4b1e65bdb863e44eef443cd3d7036 282 Pfam PF02666 Phosphatidylserine decarboxylase 68 279 7.9E-61 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMD27_07190 3864104b23db9a201718288aaceb434a 175 Gene3D G3DSA:3.40.50.2300 7 169 9.0E-49 T 11-10-2018 AMD27_07190 3864104b23db9a201718288aaceb434a 175 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 115 128 9.4E-15 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_07190 3864104b23db9a201718288aaceb434a 175 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 134 149 9.4E-15 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_07190 3864104b23db9a201718288aaceb434a 175 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 9 26 9.4E-15 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMD27_07190 3864104b23db9a201718288aaceb434a 175 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 160 4.5E-33 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_07190 3864104b23db9a201718288aaceb434a 175 SMART SM00226 7 162 7.5E-36 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_07190 3864104b23db9a201718288aaceb434a 175 SUPERFAMILY SSF52788 4 163 1.03E-43 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 34.296 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 Pfam PF00290 Tryptophan synthase alpha chain 8 260 3.0E-86 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 Gene3D G3DSA:3.20.20.70 1 267 4.3E-99 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 SUPERFAMILY SSF51366 1 243 1.04E-89 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_03170 aaa1d8dbedbec44ad077c3f8e5c14dc9 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 3.6E-76 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 Gene3D G3DSA:3.30.700.10 8 145 8.8E-26 T 11-10-2018 AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 117 3.0E-16 T 11-10-2018 IPR031982 Type IV minor pilin ComP AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 SUPERFAMILY SSF54523 8 134 8.37E-25 T 11-10-2018 AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 28 1.4E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 9.7E-12 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 9.7E-12 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01625 85dfe80165a7f29f2c12df5c1dbf3ab8 152 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 2.4E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.1E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 Pfam PF03466 LysR substrate binding domain 88 294 3.8E-22 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 Gene3D G3DSA:1.10.10.10 2 90 5.8E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 Gene3D G3DSA:3.40.190.10 91 293 2.9E-29 T 11-10-2018 AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 SUPERFAMILY SSF53850 89 295 9.59E-24 T 11-10-2018 AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 SUPERFAMILY SSF46785 3 88 4.64E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_07930 164cd90723f4c62c9f385dfcee041747 300 Gene3D G3DSA:3.40.190.10 166 267 2.9E-29 T 11-10-2018 AMD27_12620 f085bc56300f142d6d63790f06da3f4c 188 Pfam PF06821 Serine hydrolase 6 179 2.4E-24 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMD27_12620 f085bc56300f142d6d63790f06da3f4c 188 Gene3D G3DSA:3.40.50.1820 2 185 5.9E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12620 f085bc56300f142d6d63790f06da3f4c 188 SUPERFAMILY SSF53474 7 182 4.95E-24 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07830 344b2ba8372385bea374db2cd883acef 216 Pfam PF01144 Coenzyme A transferase 9 203 2.1E-38 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07830 344b2ba8372385bea374db2cd883acef 216 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 5.5E-89 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMD27_07830 344b2ba8372385bea374db2cd883acef 216 SUPERFAMILY SSF100950 7 212 2.97E-64 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_07830 344b2ba8372385bea374db2cd883acef 216 SMART SM00882 9 206 6.5E-63 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07830 344b2ba8372385bea374db2cd883acef 216 Gene3D G3DSA:3.40.1080.10 4 215 8.7E-85 T 11-10-2018 AMD27_07830 344b2ba8372385bea374db2cd883acef 216 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 11-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 Pfam PF10415 Fumarase C C-terminus 413 465 2.6E-12 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 Gene3D G3DSA:1.10.275.10 5 143 2.0E-54 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 Gene3D G3DSA:1.10.40.30 413 462 2.3E-12 T 11-10-2018 AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 SUPERFAMILY SSF48557 7 465 5.18E-128 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 Pfam PF00206 Lyase 19 346 8.7E-94 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 3.2E-28 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 3.2E-28 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 3.2E-28 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 3.2E-28 T 11-10-2018 IPR000362 Fumarate lyase family AMD27_05875 43e0c91aa2590826a2c600edce58e22d 471 Gene3D G3DSA:1.20.200.10 144 411 6.2E-104 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:3.30.460.10 88 257 1.1E-51 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 1 907 18.126 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:1.20.120.1510 409 517 9.2E-17 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:1.20.120.330 258 408 9.8E-50 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:3.30.460.100 518 769 1.2E-75 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:1.10.4050.10 1 86 1.0E-5 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 SUPERFAMILY SSF81593 774 905 3.22E-29 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 SUPERFAMILY SSF81593 260 409 1.1E-40 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 SUPERFAMILY SSF81301 481 773 6.87E-78 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Pfam PF08335 GlnD PII-uridylyltransferase 785 876 2.1E-8 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Pfam PF08335 GlnD PII-uridylyltransferase 270 409 3.4E-42 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 4 243 6.9E-62 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 509 763 1.6E-70 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 SUPERFAMILY SSF81301 4 259 9.81E-65 T 11-10-2018 AMD27_13035 549e357ee20f67e7f28a238e620a9fd7 916 Gene3D G3DSA:1.20.120.330 770 907 3.0E-42 T 11-10-2018 AMD27_10245 116644ac0993eac39467bec7cbfa2466 140 SUPERFAMILY SSF82784 1 138 3.53E-40 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMD27_10245 116644ac0993eac39467bec7cbfa2466 140 Pfam PF02566 OsmC-like protein 33 132 9.0E-20 T 11-10-2018 IPR003718 OsmC/Ohr family AMD27_10245 116644ac0993eac39467bec7cbfa2466 140 Gene3D G3DSA:3.30.300.20 39 139 1.1E-28 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_10245 116644ac0993eac39467bec7cbfa2466 140 Gene3D G3DSA:2.20.25.10 1 32 9.1E-8 T 11-10-2018 AMD27_16670 3ead99474446957697a0eead9709353c 581 SUPERFAMILY SSF52540 3 176 1.25E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16670 3ead99474446957697a0eead9709353c 581 SMART SM00382 12 166 0.005 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_16670 3ead99474446957697a0eead9709353c 581 SUPERFAMILY SSF52540 122 400 5.31E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16670 3ead99474446957697a0eead9709353c 581 Pfam PF05970 PIF1-like helicase 9 184 1.5E-34 T 11-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 AMD27_16670 3ead99474446957697a0eead9709353c 581 Gene3D G3DSA:3.40.50.300 1 194 7.2E-32 T 11-10-2018 AMD27_02960 5cbe59ded684e350cf96714df5805cce 177 Gene3D G3DSA:3.40.50.300 3 176 1.5E-16 T 11-10-2018 AMD27_02960 5cbe59ded684e350cf96714df5805cce 177 SUPERFAMILY SSF52540 5 171 2.45E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 Gene3D G3DSA:2.40.160.20 13 185 6.5E-19 T 11-10-2018 AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 Gene3D G3DSA:3.30.1330.60 210 331 3.3E-44 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 Pfam PF00691 OmpA family 225 321 2.7E-22 T 11-10-2018 IPR006665 OmpA-like domain AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 PRINTS PR01021 OMPA domain signature 226 248 3.3E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 PRINTS PR01021 OMPA domain signature 271 287 3.3E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 PRINTS PR01021 OMPA domain signature 256 271 3.3E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 SUPERFAMILY SSF103088 205 325 6.41E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 SUPERFAMILY SSF56925 30 190 2.04E-19 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMD27_12800 0970ee293f2faa3f007c9c3b1e38b5c5 336 Pfam PF13505 Outer membrane protein beta-barrel domain 7 183 1.1E-12 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel AMD27_00790 777161984926ed6b0e2725c3739f6177 254 Pfam PF07690 Major Facilitator Superfamily 20 245 5.1E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_00790 777161984926ed6b0e2725c3739f6177 254 Gene3D G3DSA:1.20.1250.20 9 254 2.1E-34 T 11-10-2018 AMD27_00790 777161984926ed6b0e2725c3739f6177 254 SUPERFAMILY SSF103473 7 251 2.88E-41 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_00790 777161984926ed6b0e2725c3739f6177 254 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 86 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 2 106 8.2E-52 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 SUPERFAMILY SSF89360 1 95 1.61E-31 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 4.0E-23 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 1.1E-36 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMD27_08755 390b77a37ed0333b67697337a64c59b7 106 Gene3D G3DSA:2.60.300.12 1 106 1.1E-36 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Pfam PF01938 TRAM domain 18 64 1.2E-5 T 11-10-2018 IPR002792 TRAM domain AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Gene3D G3DSA:2.40.50.140 3 96 2.4E-19 T 11-10-2018 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 16 458 66.045 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 43 450 2.6E-100 T 11-10-2018 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Gene3D G3DSA:3.40.50.150 97 452 5.3E-109 T 11-10-2018 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 SUPERFAMILY SSF53335 85 457 1.44E-82 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 SUPERFAMILY SSF50249 14 74 3.2E-8 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 389 419 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 107 457 1.1E-29 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMD27_02625 e729c19c4c3192f6aaa8f4abc8fd11df 460 Gene3D G3DSA:3.40.1350.30 144 287 5.3E-109 T 11-10-2018 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 Gene3D G3DSA:2.60.40.3650 1 172 2.8E-53 T 11-10-2018 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 SUPERFAMILY SSF50156 458 514 3.46E-8 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 Gene3D G3DSA:2.30.42.10 469 567 1.6E-13 T 11-10-2018 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 Gene3D G3DSA:1.10.390.60 175 445 1.2E-100 T 11-10-2018 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 Pfam PF05299 M61 glycyl aminopeptidase 268 384 1.2E-45 T 11-10-2018 IPR007963 Peptidase M61, catalytic domain AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 PIRSF PIRSF016493 1 567 3.2E-195 T 11-10-2018 IPR024191 Peptidase M61 AMD27_05340 69c909c71ab9dbc38eb79ab801c61127 567 SUPERFAMILY SSF55486 180 436 1.54E-12 T 11-10-2018 AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 304 28.769 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 Pfam PF02769 AIR synthase related protein, C-terminal domain 183 259 2.0E-5 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 SUPERFAMILY SSF55326 2 136 1.96E-38 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 PIRSF PIRSF005303 1 304 6.5E-91 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 135 1.8E-27 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 Gene3D G3DSA:3.90.650.10 143 305 2.3E-46 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 304 1.4E-103 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 Gene3D G3DSA:3.30.1330.10 1 141 4.2E-47 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_15625 3735478b06c5c530a2f4b165f7257ee6 305 SUPERFAMILY SSF56042 140 291 1.02E-33 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_10510 a49b140ac69fd9becad6907ef1788ec6 176 SUPERFAMILY SSF51161 4 173 7.49E-45 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_10510 a49b140ac69fd9becad6907ef1788ec6 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 19 47 4.1E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_10510 a49b140ac69fd9becad6907ef1788ec6 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 3.3E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_10510 a49b140ac69fd9becad6907ef1788ec6 176 Gene3D G3DSA:2.160.10.10 1 176 3.9E-55 T 11-10-2018 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 Pfam PF00487 Fatty acid desaturase 43 263 2.8E-19 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 62 82 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 189 210 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 158 176 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 100 129 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 232 246 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 12 32 1.3E-32 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMD27_12865 d4c46175e55543b6c0a84409c66b566c 388 PIRSF PIRSF000345 5 319 1.0E-96 T 11-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 AMD27_10170 32c36fdd8fe147f67b2234be980c467a 238 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 237 6.3E-52 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMD27_10170 32c36fdd8fe147f67b2234be980c467a 238 Pfam PF02390 Putative methyltransferase 64 230 1.4E-49 T 11-10-2018 AMD27_10170 32c36fdd8fe147f67b2234be980c467a 238 Gene3D G3DSA:3.40.50.150 34 238 2.7E-57 T 11-10-2018 AMD27_10170 32c36fdd8fe147f67b2234be980c467a 238 SUPERFAMILY SSF53335 49 232 3.86E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_10170 32c36fdd8fe147f67b2234be980c467a 238 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 26 237 29.068 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMD27_13205 928127140e0536e10dc24002c386fc0c 143 Pfam PF06995 Phage P2 GpU 6 126 5.2E-33 T 11-10-2018 IPR009734 Myoviridae, GpU AMD27_13205 928127140e0536e10dc24002c386fc0c 143 PIRSF PIRSF029208 1 143 4.5E-40 T 11-10-2018 IPR016912 Bacteriophage P2, GpU AMD27_17130 7cb94c3b26545df6b82965165b71de33 165 SUPERFAMILY SSF50249 4 155 1.69E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_17130 7cb94c3b26545df6b82965165b71de33 165 PIRSF PIRSF002070 1 162 2.6E-20 T 11-10-2018 AMD27_17130 7cb94c3b26545df6b82965165b71de33 165 Pfam PF00436 Single-strand binding protein family 4 99 1.5E-19 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMD27_17130 7cb94c3b26545df6b82965165b71de33 165 Gene3D G3DSA:2.40.50.140 1 129 1.5E-23 T 11-10-2018 AMD27_17130 7cb94c3b26545df6b82965165b71de33 165 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 153 2.2E-22 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.497 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 Pfam PF00547 Urease, gamma subunit 1 99 1.2E-44 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 SUPERFAMILY SSF54111 1 99 5.1E-44 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 Gene3D G3DSA:3.30.280.10 1 100 1.4E-44 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 PIRSF PIRSF001223 1 100 2.2E-48 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-45 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_02085 7a9f5d919b63f2f06509c47e536063d0 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.5E-50 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 34 224 1.5E-16 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 Gene3D G3DSA:3.30.70.1020 114 187 1.7E-46 T 11-10-2018 AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 SUPERFAMILY SSF56784 34 260 1.07E-36 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 Gene3D G3DSA:3.40.50.1000 34 246 1.7E-46 T 11-10-2018 IPR023214 HAD superfamily AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 Pfam PF02358 Trehalose-phosphatase 35 244 4.4E-33 T 11-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMD27_07740 0d6dbb76edd896308d56659929f6727a 282 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 29 258 3.6E-37 T 11-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMD27_15405 ffc4aa83c90eb78ea1a0961aa0825f8a 173 Gene3D G3DSA:3.40.1760.10 1 164 3.0E-22 T 11-10-2018 IPR035944 YfbM-like super family AMD27_15405 ffc4aa83c90eb78ea1a0961aa0825f8a 173 SUPERFAMILY SSF111069 6 162 2.48E-22 T 11-10-2018 IPR035944 YfbM-like super family AMD27_15405 ffc4aa83c90eb78ea1a0961aa0825f8a 173 Pfam PF08974 Domain of unknown function (DUF1877) 5 160 6.2E-27 T 11-10-2018 IPR015068 Protein of unknown function DUF1877 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 Gene3D G3DSA:3.40.50.720 2 164 1.6E-46 T 11-10-2018 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 Gene3D G3DSA:1.10.3730.10 165 272 3.8E-41 T 11-10-2018 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 267 26.091 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 267 6.1E-76 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 SUPERFAMILY SSF51735 8 160 1.5E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 SUPERFAMILY SSF48179 163 270 2.21E-34 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 PIRSF PIRSF000193 6 270 3.6E-72 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 1.1E-35 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMD27_02820 cdf0def4103d23ca953ada2e6c856b45 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 100 6.6E-22 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 Gene3D G3DSA:3.40.50.620 2 220 1.3E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 218 54.775 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 Pfam PF06508 Queuosine biosynthesis protein QueC 4 212 6.5E-78 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 PIRSF PIRSF006293 1 222 3.2E-79 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 205 4.3E-64 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMD27_05775 c51fe67783093e65b636ea2d31eeef4b 222 SUPERFAMILY SSF52402 4 222 8.6E-65 T 11-10-2018 AMD27_02680 3a754bffca886c5985373cb28e1d3c39 179 Gene3D G3DSA:1.10.60.30 29 104 9.0E-18 T 11-10-2018 AMD27_02680 3a754bffca886c5985373cb28e1d3c39 179 PIRSF PIRSF016183 2 176 9.5E-38 T 11-10-2018 IPR006839 Ribosome-associated, YjgA AMD27_02680 3a754bffca886c5985373cb28e1d3c39 179 SUPERFAMILY SSF158710 30 172 3.27E-32 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily AMD27_02680 3a754bffca886c5985373cb28e1d3c39 179 Pfam PF04751 Protein of unknown function (DUF615) 19 151 8.3E-30 T 11-10-2018 IPR006839 Ribosome-associated, YjgA AMD27_12400 014140d9668326c6034af0d7086ed9d8 427 PIRSF PIRSF000355 78 427 7.3E-140 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12400 014140d9668326c6034af0d7086ed9d8 427 SUPERFAMILY SSF47240 70 401 1.17E-96 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_12400 014140d9668326c6034af0d7086ed9d8 427 Pfam PF00268 Ribonucleotide reductase, small chain 108 395 2.1E-85 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12400 014140d9668326c6034af0d7086ed9d8 427 Gene3D G3DSA:1.10.620.20 85 421 2.6E-110 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 Pfam PF01264 Chorismate synthase 10 345 2.6E-136 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 PIRSF PIRSF001456 3 357 7.5E-135 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.025 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 Gene3D G3DSA:3.60.150.10 1 361 1.5E-158 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 7.9E-134 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 SUPERFAMILY SSF103263 4 351 2.09E-142 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_08670 3f018d55674903b2b8b91d81edd4b61f 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 2.6E-76 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 Gene3D G3DSA:1.10.3130.10 1 66 8.7E-24 T 11-10-2018 AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 SUPERFAMILY SSF51161 4 168 1.19E-54 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 Gene3D G3DSA:2.160.10.10 67 190 2.0E-37 T 11-10-2018 AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 7.2E-5 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_06435 5b9c584df68a2012d5b7a07115081a88 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 8.3E-6 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_04305 af7c97460228018ad2d0435c4087a68d 325 Gene3D G3DSA:1.10.600.10 2 324 1.0E-103 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMD27_04305 af7c97460228018ad2d0435c4087a68d 325 Pfam PF00348 Polyprenyl synthetase 35 273 3.3E-72 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMD27_04305 af7c97460228018ad2d0435c4087a68d 325 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 206 218 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMD27_04305 af7c97460228018ad2d0435c4087a68d 325 SUPERFAMILY SSF48576 5 323 1.23E-92 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMD27_04305 af7c97460228018ad2d0435c4087a68d 325 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 99 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMD27_14550 a04b86981c27133e1c725ef55d0e52bc 497 Pfam PF13245 AAA domain 11 250 3.6E-14 T 11-10-2018 AMD27_14550 a04b86981c27133e1c725ef55d0e52bc 497 Gene3D G3DSA:3.40.50.300 270 495 9.7E-12 T 11-10-2018 AMD27_14550 a04b86981c27133e1c725ef55d0e52bc 497 SUPERFAMILY SSF52540 7 480 1.14E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14550 a04b86981c27133e1c725ef55d0e52bc 497 Pfam PF13361 UvrD-like helicase C-terminal domain 423 475 6.8E-10 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 Gene3D G3DSA:3.10.129.10 442 556 6.6E-24 T 11-10-2018 AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 SUPERFAMILY SSF54637 452 549 2.54E-10 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 Gene3D G3DSA:3.40.50.12780 5 320 4.6E-19 T 11-10-2018 AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 Pfam PF00501 AMP-binding enzyme 116 284 1.6E-7 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 SUPERFAMILY SSF56801 24 440 7.98E-42 T 11-10-2018 AMD27_13405 8f24f27d6648c55e0b7ce57dca978b57 557 Gene3D G3DSA:3.30.300.30 330 435 7.8E-13 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Gene3D G3DSA:2.30.110.50 31 382 1.3E-46 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Pfam PF05954 Phage late control gene D protein (GPD) 43 385 2.3E-63 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 25 589 3.3E-69 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Gene3D G3DSA:2.40.50.230 433 541 1.1E-30 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 697 844 1.1E-42 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 SUPERFAMILY SSF69279 24 197 4.82E-40 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 591 3.1E-54 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Gene3D G3DSA:3.30.1920.30 254 336 1.3E-46 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Gene3D G3DSA:3.55.50.10 111 221 1.3E-46 T 11-10-2018 AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 564 671 2.2E-35 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain AMD27_13575 102c1d100253db2121b34dd90c9220c8 930 SUPERFAMILY SSF69255 442 535 2.17E-23 T 11-10-2018 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 Pfam PF03466 LysR substrate binding domain 88 284 2.2E-43 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 Gene3D G3DSA:3.40.190.290 92 286 4.0E-41 T 11-10-2018 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 Gene3D G3DSA:1.10.10.10 1 91 1.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 SUPERFAMILY SSF46785 1 111 2.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 SUPERFAMILY SSF53850 88 285 5.21E-42 T 11-10-2018 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01990 21e6c253ba304f732d2142694a715f7a 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 93 121 - T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 Gene3D G3DSA:1.20.5.1030 88 144 3.7E-14 T 11-10-2018 IPR038379 SecE superfamily AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 143 11.565 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 PRINTS PR01650 Bacterial translocase SecE signature 66 87 2.2E-15 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 PRINTS PR01650 Bacterial translocase SecE signature 111 131 2.2E-15 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 PRINTS PR01650 Bacterial translocase SecE signature 131 146 2.2E-15 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 PRINTS PR01650 Bacterial translocase SecE signature 87 107 2.2E-15 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 145 2.3E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMD27_01210 7a02f4c6ef3624b9191ca6745253f9c0 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 94 144 3.6E-15 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 Gene3D G3DSA:1.10.3430.10 52 467 1.3E-147 T 11-10-2018 IPR029020 Ammonium/urea transporter AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 TIGRFAM TIGR00836 amt: ammonium transporter 74 464 2.2E-140 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 Pfam PF00909 Ammonium Transporter Family 76 464 5.7E-123 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 PRINTS PR00342 Rhesus blood group protein signature 295 317 2.3E-6 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 PRINTS PR00342 Rhesus blood group protein signature 350 368 2.3E-6 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 PRINTS PR00342 Rhesus blood group protein signature 264 282 2.3E-6 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 PRINTS PR00342 Rhesus blood group protein signature 169 185 2.3E-6 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 SUPERFAMILY SSF111352 70 448 1.12E-134 T 11-10-2018 AMD27_00915 3b69834a50503cb46b2d49969240ed69 467 ProSitePatterns PS01219 Ammonium transporters signature. 225 250 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMD27_13365 69d15570eb4c6e845cbbc4d0954dd30e 187 Pfam PF11659 Protein of unknown function (DUF3261) 45 174 2.6E-20 T 11-10-2018 IPR021675 Protein of unknown function DUF3261 AMD27_13355 2f468dd8e559f6c4077a1c8e5353e707 143 SUPERFAMILY SSF54637 5 120 6.52E-19 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_13355 2f468dd8e559f6c4077a1c8e5353e707 143 Gene3D G3DSA:3.10.129.10 2 131 8.7E-15 T 11-10-2018 AMD27_13355 2f468dd8e559f6c4077a1c8e5353e707 143 PIRSF PIRSF020565 2 141 1.5E-33 T 11-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted AMD27_11965 6e94e56618c76da6da28ba96ce11846a 176 SUPERFAMILY SSF52980 2 176 2.68E-62 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_11965 6e94e56618c76da6da28ba96ce11846a 176 PIRSF PIRSF011484 1 176 3.6E-59 T 11-10-2018 IPR009822 YaeQ AMD27_11965 6e94e56618c76da6da28ba96ce11846a 176 Pfam PF07152 YaeQ protein 1 172 1.0E-65 T 11-10-2018 IPR009822 YaeQ AMD27_11965 6e94e56618c76da6da28ba96ce11846a 176 SMART SM01322 1 174 1.6E-93 T 11-10-2018 IPR009822 YaeQ AMD27_11965 6e94e56618c76da6da28ba96ce11846a 176 Gene3D G3DSA:3.10.640.10 1 176 3.8E-68 T 11-10-2018 IPR038590 YaeQ superfamily AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Gene3D G3DSA:3.30.1360.200 279 449 1.0E-45 T 11-10-2018 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 356 611 2.9E-69 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Pfam PF07549 SecD/SecF GG Motif 115 139 2.6E-7 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 618 4.1E-133 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Gene3D G3DSA:3.30.70.3400 220 455 1.0E-45 T 11-10-2018 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Gene3D G3DSA:1.20.1640.10 471 617 2.8E-14 T 11-10-2018 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Pfam PF02355 Protein export membrane protein 455 621 8.0E-18 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 SUPERFAMILY SSF82866 428 626 4.71E-44 T 11-10-2018 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 632 48.792 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 Pfam PF13721 SecD export protein N-terminal TM region 2 102 2.7E-33 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 PRINTS PR00702 Acriflavin resistance protein family signature 595 618 2.1E-7 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 PRINTS PR00702 Acriflavin resistance protein family signature 520 544 2.1E-7 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_13325 d004ce320d2dc3a1e8e2f78f3ec1de0d 633 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 2.1E-7 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMD27_07510 d04d5957a04c91aefa9a2a2dec86a4c5 210 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 13 206 1.0E-27 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 SUPERFAMILY SSF56024 38 232 5.49E-39 T 11-10-2018 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 SUPERFAMILY SSF56024 274 471 2.92E-28 T 11-10-2018 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 Pfam PF13091 PLD-like domain 73 222 2.2E-17 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 Pfam PF13091 PLD-like domain 314 460 9.4E-16 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 Gene3D G3DSA:3.30.870.10 265 469 8.0E-34 T 11-10-2018 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 SMART SM00155 163 190 0.039 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 SMART SM00155 408 434 6.8E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMD27_08115 5235560d3768a662e26e9f268984d0ad 517 Gene3D G3DSA:3.30.870.10 59 258 4.7E-39 T 11-10-2018 AMD27_11530 759395df36990a5ac66e82ae2104853b 226 SUPERFAMILY SSF53335 62 223 3.53E-22 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_11530 759395df36990a5ac66e82ae2104853b 226 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 86 159 2.6E-15 T 11-10-2018 AMD27_11530 759395df36990a5ac66e82ae2104853b 226 Gene3D G3DSA:3.40.50.150 51 198 1.9E-22 T 11-10-2018 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 Gene3D G3DSA:3.30.540.10 9 157 6.8E-33 T 11-10-2018 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 92 105 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 Gene3D G3DSA:3.40.190.80 162 270 8.1E-24 T 11-10-2018 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 Pfam PF00459 Inositol monophosphatase family 17 260 7.4E-36 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 SUPERFAMILY SSF56655 17 279 7.98E-55 T 11-10-2018 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 12 267 34.433 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 92 108 8.5E-6 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 8.5E-6 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_08820 ca0c5fe6c6ae33b143fd06b603e3238d 282 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 8.5E-6 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMD27_12845 f517b80115759a3ab979aca7eabfcf13 213 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 205 7.2E-59 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMD27_12845 f517b80115759a3ab979aca7eabfcf13 213 Gene3D G3DSA:3.20.20.70 2 211 1.5E-67 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_12845 f517b80115759a3ab979aca7eabfcf13 213 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 210 39.65 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMD27_12845 f517b80115759a3ab979aca7eabfcf13 213 SUPERFAMILY SSF51366 4 207 8.79E-60 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 PIRSF PIRSF003107 9 230 3.1E-63 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 SUPERFAMILY SSF109755 14 235 2.41E-65 T 11-10-2018 AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 Gene3D G3DSA:1.20.58.220 3 121 1.4E-38 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 Gene3D G3DSA:1.20.58.220 122 235 2.6E-33 T 11-10-2018 IPR038078 PhoU-like domain superfamily AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 Pfam PF01895 PhoU domain 132 215 1.5E-16 T 11-10-2018 IPR026022 PhoU domain AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 Pfam PF01895 PhoU domain 29 114 4.3E-17 T 11-10-2018 IPR026022 PhoU domain AMD27_01095 e87b52cc10a61bcdcebc4b80d770b355 242 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 14 224 1.5E-64 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMD27_14190 6bb0977fce167ee56a6145d3c1d74064 259 Pfam PF02405 Permease MlaE 41 253 1.7E-69 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMD27_14190 6bb0977fce167ee56a6145d3c1d74064 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 4 257 3.7E-84 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AMD27_14330 c09ebbf22042ea3689c86670e6c6f17b 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 120 17.692 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMD27_14330 c09ebbf22042ea3689c86670e6c6f17b 126 TIGRFAM TIGR00494 crcB: protein CrcB 4 119 9.1E-27 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMD27_14330 c09ebbf22042ea3689c86670e6c6f17b 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 4 115 4.1E-24 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMD27_01775 b12d343f124b095c0014a5d907608feb 194 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 182 193 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMD27_01775 b12d343f124b095c0014a5d907608feb 194 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 88 98 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMD27_01775 b12d343f124b095c0014a5d907608feb 194 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 60 193 1.1E-33 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMD27_01775 b12d343f124b095c0014a5d907608feb 194 Gene3D G3DSA:2.60.40.200 44 194 6.8E-50 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMD27_01775 b12d343f124b095c0014a5d907608feb 194 SUPERFAMILY SSF49329 47 193 4.58E-45 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMD27_10040 e2702cf678c0f80147b147547762dec6 479 Gene3D G3DSA:3.30.2010.10 66 147 1.0E-6 T 11-10-2018 AMD27_10040 e2702cf678c0f80147b147547762dec6 479 SUPERFAMILY SSF48452 300 456 3.8E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_10040 e2702cf678c0f80147b147547762dec6 479 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 5 477 30.476 T 11-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 AMD27_10040 e2702cf678c0f80147b147547762dec6 479 Gene3D G3DSA:1.25.40.10 274 477 5.0E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_10040 e2702cf678c0f80147b147547762dec6 479 Pfam PF01435 Peptidase family M48 76 255 1.4E-30 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 SUPERFAMILY SSF55021 79 161 1.41E-26 T 11-10-2018 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 Pfam PF13710 ACT domain 13 73 3.0E-17 T 11-10-2018 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-37 T 11-10-2018 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 2.4E-27 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 SUPERFAMILY SSF55021 2 76 7.1E-22 T 11-10-2018 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 Gene3D G3DSA:3.30.70.1150 83 163 1.2E-29 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.2E-63 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMD27_13520 abbf1fe6f393be1528a8fd05f407dba2 163 Gene3D G3DSA:3.30.70.260 1 78 7.6E-34 T 11-10-2018 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 Gene3D G3DSA:3.90.1150.10 10 424 9.7E-174 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 Gene3D G3DSA:3.40.640.10 72 322 9.7E-174 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 Pfam PF00202 Aminotransferase class-III 35 400 3.5E-77 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 431 103.879 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 430 6.2E-186 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AMD27_05500 25d426555f770dd950bf9a16391b0257 432 SUPERFAMILY SSF53383 6 429 1.97E-127 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05500 25d426555f770dd950bf9a16391b0257 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 275 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_07910 2ef0b8a4414be31f5edf36e94a39072c 158 SUPERFAMILY SSF54593 29 140 1.01E-7 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_07910 2ef0b8a4414be31f5edf36e94a39072c 158 Gene3D G3DSA:3.10.180.10 15 146 2.0E-7 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_10770 d8ba0caa8a133f60cdb18ef691ba629f 318 Gene3D G3DSA:3.60.130.10 18 318 7.2E-65 T 11-10-2018 AMD27_10770 d8ba0caa8a133f60cdb18ef691ba629f 318 SUPERFAMILY SSF51197 36 318 1.05E-60 T 11-10-2018 AMD27_10770 d8ba0caa8a133f60cdb18ef691ba629f 318 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 310 1.4E-46 T 11-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AMD27_03585 38b222d689a747ce9b46fa510bf21d2a 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 6.5E-106 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AMD27_03585 38b222d689a747ce9b46fa510bf21d2a 270 PIRSF PIRSF003092 1 270 1.4E-88 T 11-10-2018 IPR025501 ATP binding protein MinD AMD27_03585 38b222d689a747ce9b46fa510bf21d2a 270 SUPERFAMILY SSF52540 2 268 3.95E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03585 38b222d689a747ce9b46fa510bf21d2a 270 Gene3D G3DSA:3.40.50.300 1 259 3.4E-71 T 11-10-2018 AMD27_03585 38b222d689a747ce9b46fa510bf21d2a 270 Pfam PF13614 AAA domain 3 167 5.3E-21 T 11-10-2018 IPR025669 AAA domain AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 Gene3D G3DSA:3.50.50.60 9 393 3.8E-116 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 Gene3D G3DSA:2.40.30.10 192 344 3.8E-116 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 Gene3D G3DSA:1.10.8.260 265 327 3.8E-116 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 SUPERFAMILY SSF51905 4 399 3.42E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 Pfam PF03486 HI0933-like protein 6 397 4.3E-135 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 5.7E-9 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.7E-9 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 367 374 5.7E-9 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 SUPERFAMILY SSF160996 194 343 1.02E-32 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 8 397 5.6E-115 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.7E-6 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 1.7E-6 T 11-10-2018 AMD27_12265 899938ced954d76ac0ec75b9b1744190 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 123 141 1.7E-6 T 11-10-2018 AMD27_02155 287d99c102e378eaeee18b6f56dee9cf 294 Pfam PF13737 Transposase DDE domain 1 109 3.2E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Gene3D G3DSA:3.30.2130.30 12 269 6.4E-111 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Pfam PF02926 THUMP domain 37 154 3.0E-9 T 11-10-2018 IPR004114 THUMP domain GO:0003723 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 210 221 - T 11-10-2018 IPR000241 Putative RNA methylase domain AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Gene3D G3DSA:3.30.750.80 420 511 1.2E-32 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 323 329 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Gene3D G3DSA:3.40.50.150 512 732 1.3E-67 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 SMART SM00981 70 167 2.1E-6 T 11-10-2018 IPR004114 THUMP domain GO:0003723 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 PIRSF PIRSF037618 6 733 2.4E-279 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Gene3D G3DSA:3.40.50.150 182 387 6.4E-111 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 208 222 4.9E-5 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 320 332 4.9E-5 T 11-10-2018 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 505 686 3.6E-21 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Pfam PF01170 Putative RNA methylase family UPF0020 175 373 9.2E-36 T 11-10-2018 IPR000241 Putative RNA methylase domain AMD27_10210 a18bd851990b4db2da56649297deba1a 734 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 10 732 29.203 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 AMD27_10210 a18bd851990b4db2da56649297deba1a 734 SUPERFAMILY SSF53335 423 733 2.31E-62 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_10210 a18bd851990b4db2da56649297deba1a 734 SUPERFAMILY SSF53335 162 367 1.36E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Gene3D G3DSA:3.65.10.10 318 734 5.4E-167 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 SUPERFAMILY SSF55205 309 741 9.48E-130 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 318 739 2.1E-129 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 314 743 32.969 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Gene3D G3DSA:1.10.3660.10 184 288 9.7E-35 T 11-10-2018 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 ProSitePatterns PS00885 EPSP synthase signature 2. 647 665 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 ProSitePatterns PS00104 EPSP synthase signature 1. 393 407 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 SUPERFAMILY SSF51735 8 176 1.29E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Gene3D G3DSA:3.40.50.720 6 183 4.5E-51 T 11-10-2018 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Gene3D G3DSA:3.65.10.10 326 536 5.4E-167 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 SUPERFAMILY SSF48179 181 288 2.15E-33 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 314 734 1.1E-117 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMD27_05280 eef39f335be19b7c1403bba658744f3f 748 Pfam PF02153 Prephenate dehydrogenase 22 278 1.1E-70 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 2.5E-13 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 SUPERFAMILY SSF51197 4 179 2.38E-7 T 11-10-2018 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 Gene3D G3DSA:4.10.860.20 180 227 1.0E-20 T 11-10-2018 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 Gene3D G3DSA:2.60.120.620 1 178 1.7E-42 T 11-10-2018 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 SMART SM00702 2 177 8.4E-22 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMD27_02345 1639f7da1d237741b3be4c2faf4c599d 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 44.49 T 11-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 Gene3D G3DSA:3.30.63.10 34 93 1.6E-63 T 11-10-2018 AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 34.561 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 SUPERFAMILY SSF52540 2 185 5.24E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 SMART SM00072 2 184 2.0E-59 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.2E-70 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 Pfam PF00625 Guanylate kinase 6 182 6.8E-50 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 Gene3D G3DSA:3.40.50.300 7 180 1.6E-63 T 11-10-2018 AMD27_01585 122bc23881e4110991c9504ecaa5dbdf 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMD27_13100 90fc495353aa0eb0dffda0395fe0890f 342 Pfam PF05125 Phage major capsid protein, P2 family 13 338 1.7E-102 T 11-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid AMD27_13100 90fc495353aa0eb0dffda0395fe0890f 342 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 11 340 1.3E-70 T 11-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 Pfam PF00501 AMP-binding enzyme 51 477 2.9E-59 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 SUPERFAMILY SSF56801 47 579 1.1E-95 T 11-10-2018 AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 565 1.2E-7 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 ProSitePatterns PS00455 Putative AMP-binding domain signature. 218 229 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 Gene3D G3DSA:3.40.50.12780 32 470 3.1E-62 T 11-10-2018 AMD27_01905 1aca9091608bcdc086b8c02483a7a52e 613 Gene3D G3DSA:3.30.300.30 473 581 8.3E-14 T 11-10-2018 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 SUPERFAMILY SSF53850 25 121 2.67E-7 T 11-10-2018 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 230 258 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 57 122 1.8E-6 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 Gene3D G3DSA:1.10.530.10 206 367 1.9E-33 T 11-10-2018 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 Pfam PF01464 Transglycosylase SLT domain 213 322 6.6E-22 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 Gene3D G3DSA:3.40.190.10 36 185 5.0E-14 T 11-10-2018 AMD27_11425 06674710b0c73aedd0d0d73e8a5f555e 370 SUPERFAMILY SSF53955 167 358 5.87E-31 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_14105 81d0ec53497a19d40ab7f5892464cb9f 254 SUPERFAMILY SSF63380 149 252 2.07E-8 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_14105 81d0ec53497a19d40ab7f5892464cb9f 254 Pfam PF00042 Globin 5 101 4.1E-9 T 11-10-2018 IPR000971 Globin GO:0020037 AMD27_14105 81d0ec53497a19d40ab7f5892464cb9f 254 Gene3D G3DSA:1.10.490.10 1 149 1.4E-47 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMD27_14105 81d0ec53497a19d40ab7f5892464cb9f 254 SUPERFAMILY SSF46458 2 140 6.48E-35 T 11-10-2018 IPR009050 Globin-like superfamily AMD27_14105 81d0ec53497a19d40ab7f5892464cb9f 254 Gene3D G3DSA:2.40.30.10 150 254 7.5E-15 T 11-10-2018 AMD27_06475 4c83727ea59ef08996cd0bf87b233878 302 Pfam PF03956 Lysine exporter LysO 116 299 1.5E-50 T 11-10-2018 IPR005642 Lysine exporter LysO AMD27_06475 4c83727ea59ef08996cd0bf87b233878 302 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 138 285 1.0E-51 T 11-10-2018 IPR005642 Lysine exporter LysO AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 Pfam PF00691 OmpA family 156 246 1.3E-13 T 11-10-2018 IPR006665 OmpA-like domain AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 Pfam PF04355 SmpA / OmlA family 52 118 9.6E-16 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 SUPERFAMILY SSF103088 150 265 3.27E-20 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 PRINTS PR01021 OMPA domain signature 188 203 4.3E-6 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 PRINTS PR01021 OMPA domain signature 203 219 4.3E-6 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 Gene3D G3DSA:3.30.1450.10 54 128 2.3E-9 T 11-10-2018 IPR037873 BamE-like AMD27_00175 180e5b8e9423cb07f5b666198d181322 265 Gene3D G3DSA:3.30.1330.60 137 265 8.8E-27 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_06410 b078fa5481855d5ef4618f914229643c 237 Pfam PF00072 Response regulator receiver domain 14 123 1.6E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_06410 b078fa5481855d5ef4618f914229643c 237 Gene3D G3DSA:3.40.50.2300 1 136 3.4E-36 T 11-10-2018 AMD27_06410 b078fa5481855d5ef4618f914229643c 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 232 7.8E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_06410 b078fa5481855d5ef4618f914229643c 237 SUPERFAMILY SSF52172 11 192 1.2E-40 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_06410 b078fa5481855d5ef4618f914229643c 237 SMART SM00448 12 122 4.5E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_06410 b078fa5481855d5ef4618f914229643c 237 Gene3D G3DSA:1.10.10.10 137 236 1.2E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_06410 b078fa5481855d5ef4618f914229643c 237 SMART SM00862 157 233 3.4E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1138 1.5E-272 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 SUPERFAMILY SSF52540 607 1141 4.07E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 PIRSF PIRSF005719 1 1145 2.0E-230 T 11-10-2018 IPR024704 Structural maintenance of chromosomes protein AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 Gene3D G3DSA:3.40.50.300 912 1147 9.8E-46 T 11-10-2018 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 Gene3D G3DSA:3.40.50.300 1 261 1.1E-52 T 11-10-2018 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1140 20.767 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1131 2.0E-58 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 SUPERFAMILY SSF57997 647 867 1.96E-8 T 11-10-2018 AMD27_12590 ed6ea1a8c1492691313bde3f07d04a43 1150 SUPERFAMILY SSF52540 1 349 3.74E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00140 7bdb110fdc3b62fdebaa0afaee9372fd 198 PIRSF PIRSF011444 1 196 8.7E-78 T 11-10-2018 IPR009706 Protein of unknown function DUF1287 AMD27_00140 7bdb110fdc3b62fdebaa0afaee9372fd 198 ProDom PD357862 YIJF PERIPLASMIC ECS4873 PRECURSOR CC1379 SIGNAL DOMAIN PM0035 27 193 6.0E-57 T 11-10-2018 IPR009706 Protein of unknown function DUF1287 AMD27_00140 7bdb110fdc3b62fdebaa0afaee9372fd 198 Pfam PF06940 Domain of unknown function (DUF1287) 35 193 6.7E-63 T 11-10-2018 IPR009706 Protein of unknown function DUF1287 AMD27_08030 e83d045e95125f5463a958aead96c1c5 408 Pfam PF00924 Mechanosensitive ion channel 142 396 8.9E-49 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMD27_08030 e83d045e95125f5463a958aead96c1c5 408 SUPERFAMILY SSF50182 186 252 2.84E-11 T 11-10-2018 IPR010920 LSM domain superfamily AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 Pfam PF00072 Response regulator receiver domain 3 111 2.8E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 Gene3D G3DSA:3.40.50.2300 1 137 9.8E-37 T 11-10-2018 AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 Gene3D G3DSA:2.40.50.40 138 205 8.9E-10 T 11-10-2018 AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 SUPERFAMILY SSF52172 1 143 1.57E-35 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 SMART SM00850 146 243 1.6E-26 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 SMART SM00448 1 111 1.5E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_01115 cd97d6b96c49703511914dd96ff20942 245 Pfam PF04397 LytTr DNA-binding domain 148 242 4.2E-21 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMD27_07170 f036c941d3f7bd8845ae94a9a0afc570 152 Pfam PF04170 NlpE N-terminal domain 48 116 4.3E-6 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE AMD27_07170 f036c941d3f7bd8845ae94a9a0afc570 152 Gene3D G3DSA:2.40.128.640 36 139 7.4E-9 T 11-10-2018 AMD27_07795 28657b6db867eb2447746bff5644a214 307 SMART SM00852 151 293 1.9E-17 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07795 28657b6db867eb2447746bff5644a214 307 Pfam PF01967 MoaC family 1 136 1.6E-42 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07795 28657b6db867eb2447746bff5644a214 307 PIRSF PIRSF036594 1 305 1.6E-70 T 11-10-2018 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823 AMD27_07795 28657b6db867eb2447746bff5644a214 307 Gene3D G3DSA:3.40.980.10 147 303 6.0E-42 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMD27_07795 28657b6db867eb2447746bff5644a214 307 SUPERFAMILY SSF53218 147 301 6.54E-35 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMD27_07795 28657b6db867eb2447746bff5644a214 307 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 149 283 1.1E-26 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07795 28657b6db867eb2447746bff5644a214 307 Gene3D G3DSA:3.30.70.640 1 146 6.7E-49 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07795 28657b6db867eb2447746bff5644a214 307 Pfam PF00994 Probable molybdopterin binding domain 152 291 1.5E-27 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07795 28657b6db867eb2447746bff5644a214 307 SUPERFAMILY SSF55040 1 140 1.7E-44 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_01385 446793e1a1c9a66319f53d1060322d98 206 SUPERFAMILY SSF51197 27 204 1.03E-52 T 11-10-2018 AMD27_01385 446793e1a1c9a66319f53d1060322d98 206 Gene3D G3DSA:2.60.120.590 24 206 5.6E-56 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily AMD27_01385 446793e1a1c9a66319f53d1060322d98 206 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 60 201 2.9E-27 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 Pfam PF00313 'Cold-shock' DNA-binding domain 8 70 1.1E-27 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 SMART SM00357 8 71 3.2E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 Gene3D G3DSA:2.40.50.140 6 69 4.8E-27 T 11-10-2018 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 20 38 - T 11-10-2018 IPR019844 Cold-shock conserved site AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 SUPERFAMILY SSF50249 5 70 1.71E-23 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 PIRSF PIRSF002599 2 71 1.4E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 PRINTS PR00050 Cold shock protein signature 29 38 1.4E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 PRINTS PR00050 Cold shock protein signature 9 24 1.4E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_03130 32b7c24e34f0d8a7e3896c9d5c65eab3 71 PRINTS PR00050 Cold shock protein signature 44 62 1.4E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 Pfam PF00849 RNA pseudouridylate synthase 123 271 9.2E-28 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 166 180 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 SMART SM00363 50 107 0.0012 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 Gene3D G3DSA:3.30.2350.10 116 347 2.2E-67 T 11-10-2018 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 Gene3D G3DSA:3.10.290.10 34 107 1.0E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 SUPERFAMILY SSF55120 109 345 1.85E-72 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 47 344 7.8E-90 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 SUPERFAMILY SSF55174 49 136 5.72E-8 T 11-10-2018 AMD27_04530 50ef40e1ddef9ddbf1322ed26559f4b8 350 Pfam PF01479 S4 domain 64 94 1.0E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 Pfam PF00775 Dioxygenase 101 287 3.7E-58 T 11-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 SUPERFAMILY SSF49482 15 290 1.06E-79 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 Pfam PF04444 Catechol dioxygenase N terminus 23 92 3.9E-20 T 11-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 2 287 4.9E-143 T 11-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 133 161 - T 11-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMD27_07865 8826d5649d2325519f5528b49bc0d840 306 Gene3D G3DSA:2.60.130.10 1 306 6.3E-117 T 11-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMD27_14195 1787e2209fedd06679af0b20d3cce177 272 SUPERFAMILY SSF52540 12 243 3.17E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14195 1787e2209fedd06679af0b20d3cce177 272 Pfam PF00005 ABC transporter 29 177 3.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14195 1787e2209fedd06679af0b20d3cce177 272 Gene3D G3DSA:3.40.50.300 10 263 2.5E-66 T 11-10-2018 AMD27_14195 1787e2209fedd06679af0b20d3cce177 272 SMART SM00382 37 225 3.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05205 54ca3d6681e59ee1033d3c5b3147eb6c 236 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 152 2.6E-38 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain AMD27_05205 54ca3d6681e59ee1033d3c5b3147eb6c 236 Pfam PF01980 Uncharacterised protein family UPF0066 20 146 2.5E-39 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain AMD27_05205 54ca3d6681e59ee1033d3c5b3147eb6c 236 SUPERFAMILY SSF118196 3 232 4.71E-67 T 11-10-2018 IPR036413 YaeB-like superfamily AMD27_05205 54ca3d6681e59ee1033d3c5b3147eb6c 236 Gene3D G3DSA:2.40.30.70 21 150 8.1E-45 T 11-10-2018 IPR036414 YaeB, N-terminal domain superfamily AMD27_05205 54ca3d6681e59ee1033d3c5b3147eb6c 236 Gene3D G3DSA:3.30.2310.10 151 234 2.1E-12 T 11-10-2018 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 7.7E-20 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Gene3D G3DSA:3.40.120.10 175 359 4.8E-66 T 11-10-2018 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 45.634 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 SUPERFAMILY SSF55957 355 440 3.79E-21 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Gene3D G3DSA:3.30.310.50 367 443 1.4E-21 T 11-10-2018 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 439 1.0E-13 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Gene3D G3DSA:3.40.120.10 257 336 4.8E-66 T 11-10-2018 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 361 5.6E-30 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 SUPERFAMILY SSF53738 258 362 6.28E-27 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 2.7E-40 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 SUPERFAMILY SSF53738 2 181 5.89E-46 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 439 9.9E-184 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 Gene3D G3DSA:3.40.120.10 1 154 4.0E-45 T 11-10-2018 AMD27_15260 28ef3a7b6ed28c9f9fa0b014b930426e 443 SUPERFAMILY SSF53738 156 257 3.45E-33 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 Gene3D G3DSA:3.30.200.20 7 231 3.1E-93 T 11-10-2018 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 Gene3D G3DSA:3.30.470.20 85 220 3.1E-93 T 11-10-2018 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 30.956 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 SUPERFAMILY SSF56104 2 232 9.48E-81 T 11-10-2018 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 234 3.2E-78 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 Pfam PF01259 SAICAR synthetase 7 231 3.3E-65 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_15755 86b554980a6b2ca92774dde271cbc31d 239 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMD27_04760 3c16f1731b06b0f314e04e595b37760d 126 SUPERFAMILY SSF54593 1 125 9.16E-14 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_04760 3c16f1731b06b0f314e04e595b37760d 126 Gene3D G3DSA:3.10.180.10 5 125 2.1E-19 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 SUPERFAMILY SSF52343 102 257 4.45E-36 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 Pfam PF00175 Oxidoreductase NAD-binding domain 112 229 2.9E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 Gene3D G3DSA:3.40.50.80 100 255 7.6E-38 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 Gene3D G3DSA:2.40.30.10 1 96 4.4E-29 T 11-10-2018 AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 Pfam PF00970 Oxidoreductase FAD-binding domain 15 98 3.3E-10 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMD27_05200 9c9675d424c6189539d0717071b06c4d 259 SUPERFAMILY SSF63380 7 99 1.18E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_13630 34c453b47c53e16606c7c56f672977d9 239 TIGRFAM TIGR00608 radc: DNA repair protein RadC 25 237 1.3E-61 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 AMD27_13630 34c453b47c53e16606c7c56f672977d9 239 SUPERFAMILY SSF47781 29 103 3.81E-10 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_13630 34c453b47c53e16606c7c56f672977d9 239 Gene3D G3DSA:3.40.140.10 113 238 1.5E-34 T 11-10-2018 AMD27_13630 34c453b47c53e16606c7c56f672977d9 239 Gene3D G3DSA:1.10.150.20 58 100 7.8E-6 T 11-10-2018 AMD27_13630 34c453b47c53e16606c7c56f672977d9 239 Pfam PF04002 RadC-like JAB domain 118 235 5.1E-35 T 11-10-2018 IPR025657 RadC-like JAB domain AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 Gene3D G3DSA:3.40.50.720 124 248 2.7E-58 T 11-10-2018 AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 SUPERFAMILY SSF50129 6 142 3.35E-21 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 88 7.4E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 Pfam PF00107 Zinc-binding dehydrogenase 149 229 2.8E-12 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 Gene3D G3DSA:3.90.180.10 10 296 2.7E-58 T 11-10-2018 AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 SUPERFAMILY SSF51735 113 232 6.0E-22 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07925 eb03485b68fec3faceaacc9caab0a210 300 SMART SM00829 12 297 2.0E-12 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 Gene3D G3DSA:1.25.40.10 17 303 3.3E-27 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 SUPERFAMILY SSF81901 170 300 1.31E-16 T 11-10-2018 AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 SMART SM00671 223 259 3.8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 SMART SM00671 260 295 0.0015 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 Pfam PF08238 Sel1 repeat 49 63 41.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 Pfam PF08238 Sel1 repeat 229 259 1.1 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 Pfam PF08238 Sel1 repeat 261 290 0.34 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16315 638b44e28bf2f24646880e8cfe995ba5 310 Pfam PF08238 Sel1 repeat 187 221 46.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_03015 d73e391149d1d6cea337fb621d914653 151 Gene3D G3DSA:2.40.128.520 21 151 7.1E-19 T 11-10-2018 AMD27_03015 d73e391149d1d6cea337fb621d914653 151 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 146 2.5E-26 T 11-10-2018 IPR019223 Domain of unknown function DUF2147 AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SMART SM00671 110 145 12.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SMART SM00671 218 253 0.86 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SMART SM00671 146 181 0.0018 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SMART SM00671 70 109 8.9E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SMART SM00671 182 217 9.3E-11 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 SUPERFAMILY SSF81901 41 267 1.11E-41 T 11-10-2018 AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 70 108 9.9E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 130 145 120.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 220 252 1.3E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 182 217 3.8E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 255 264 140.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Pfam PF08238 Sel1 repeat 147 181 0.53 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13565 2b3e8ac566e6fef0baefdbc0982ad1fa 287 Gene3D G3DSA:1.25.40.10 33 283 4.7E-56 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_02595 089a0884c6a7391150ad592f6114c087 260 PIRSF PIRSF006241 1 260 7.1E-85 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like AMD27_02595 089a0884c6a7391150ad592f6114c087 260 Pfam PF01261 Xylose isomerase-like TIM barrel 21 210 3.5E-24 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMD27_02595 089a0884c6a7391150ad592f6114c087 260 Gene3D G3DSA:3.20.20.150 1 260 2.0E-61 T 11-10-2018 AMD27_02595 089a0884c6a7391150ad592f6114c087 260 SUPERFAMILY SSF51658 1 258 4.56E-65 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily AMD27_15465 191d9290e8fe0867e8523d78ea1c0ff9 525 SUPERFAMILY SSF55931 14 521 3.79E-177 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMD27_15465 191d9290e8fe0867e8523d78ea1c0ff9 525 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 525 184.373 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMD27_15465 191d9290e8fe0867e8523d78ea1c0ff9 525 Gene3D G3DSA:3.30.590.20 20 525 3.6E-177 T 11-10-2018 AMD27_15465 191d9290e8fe0867e8523d78ea1c0ff9 525 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 19 523 1.2E-156 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMD27_15465 191d9290e8fe0867e8523d78ea1c0ff9 525 Pfam PF04262 Glutamate-cysteine ligase 18 388 1.3E-146 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMD27_12435 72f613eaca52a29a9bee3a00bd9b5051 249 Gene3D G3DSA:3.40.50.12500 9 249 5.3E-56 T 11-10-2018 AMD27_12435 72f613eaca52a29a9bee3a00bd9b5051 249 PIRSF PIRSF015736 1 249 3.8E-50 T 11-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMD27_15085 f1aef2ab4e99edeee6c457e04cca4cb9 132 Pfam PF07690 Major Facilitator Superfamily 31 131 7.6E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_15085 f1aef2ab4e99edeee6c457e04cca4cb9 132 SUPERFAMILY SSF103473 2 131 2.88E-23 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_15085 f1aef2ab4e99edeee6c457e04cca4cb9 132 Gene3D G3DSA:1.20.1250.20 8 132 8.0E-20 T 11-10-2018 AMD27_01365 1700f5ced5bb92146966058e9044ee9e 264 Pfam PF13622 Thioesterase-like superfamily 19 262 1.6E-39 T 11-10-2018 AMD27_01365 1700f5ced5bb92146966058e9044ee9e 264 SUPERFAMILY SSF54637 15 108 6.51E-17 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_01365 1700f5ced5bb92146966058e9044ee9e 264 Gene3D G3DSA:3.10.129.90 6 263 3.8E-59 T 11-10-2018 AMD27_01365 1700f5ced5bb92146966058e9044ee9e 264 SUPERFAMILY SSF54637 118 262 2.39E-17 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_14585 45063b181b75ed3cfaa605a1c0808f24 128 Pfam PF03334 Na+/H+ antiporter subunit 12 91 1.6E-23 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMD27_14585 45063b181b75ed3cfaa605a1c0808f24 128 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 11 97 1.3E-22 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 156 6.3E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 SUPERFAMILY SSF74982 9 139 6.28E-49 T 11-10-2018 IPR023620 Small protein B AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 2.0E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 Hamap MF_00023 SsrA-binding protein [smpB]. 1 158 68.07 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 Gene3D G3DSA:2.40.280.10 7 136 3.1E-47 T 11-10-2018 IPR023620 Small protein B AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 Pfam PF01668 SmpB protein 15 157 2.4E-56 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMD27_04555 99f39d6d2f79e0e5a26847d1ef4bb456 158 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site AMD27_09905 dcafc232f54b6100426e4074c8813604 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 3.4E-176 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 330 420 6.6E-28 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 42.998 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Gene3D G3DSA:3.90.600.10 329 427 1.3E-33 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 SUPERFAMILY SSF52440 1 103 1.44E-35 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMD27_09905 dcafc232f54b6100426e4074c8813604 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 11-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 SUPERFAMILY SSF51246 328 423 3.09E-30 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 SMART SM01209 103 296 2.3E-137 T 11-10-2018 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Gene3D G3DSA:3.40.50.20 2 95 5.4E-36 T 11-10-2018 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Gene3D G3DSA:3.30.470.20 191 328 8.7E-57 T 11-10-2018 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 8.5E-34 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 4.1E-85 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 Gene3D G3DSA:3.30.1490.20 122 190 3.6E-28 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 SMART SM01210 329 422 4.5E-48 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_09905 dcafc232f54b6100426e4074c8813604 427 SUPERFAMILY SSF56059 104 318 1.66E-63 T 11-10-2018 AMD27_12180 652faa20dba9d426a76bda9f0c90f77d 189 Gene3D G3DSA:2.70.40.10 1 161 3.2E-54 T 11-10-2018 IPR036157 dUTPase-like superfamily AMD27_12180 652faa20dba9d426a76bda9f0c90f77d 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 5.4E-51 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMD27_12180 652faa20dba9d426a76bda9f0c90f77d 189 Pfam PF00692 dUTPase 72 184 8.0E-9 T 11-10-2018 IPR029054 dUTPase-like AMD27_12180 652faa20dba9d426a76bda9f0c90f77d 189 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 28.854 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMD27_12180 652faa20dba9d426a76bda9f0c90f77d 189 SUPERFAMILY SSF51283 3 188 6.41E-55 T 11-10-2018 IPR036157 dUTPase-like superfamily AMD27_08890 98614247c0d4df1ca8ea5232f431e3e2 274 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 225 251 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AMD27_08890 98614247c0d4df1ca8ea5232f431e3e2 274 Pfam PF01148 Cytidylyltransferase family 3 265 3.5E-59 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 Gene3D G3DSA:3.30.9.30 38 288 7.3E-49 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 4.7E-18 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 4.7E-18 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 4.7E-18 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 325 4.7E-18 T 11-10-2018 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 Pfam PF01494 FAD binding domain 5 352 1.2E-25 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 SUPERFAMILY SSF51905 4 395 1.49E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14540 375144adf9cc6e32862d07973bbca5a3 424 Gene3D G3DSA:3.50.50.60 6 354 7.3E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14300 a59975949643e7b1a26efa595b445efc 475 Pfam PF13458 Periplasmic binding protein 63 432 9.4E-78 T 11-10-2018 IPR028081 Leucine-binding protein domain AMD27_14300 a59975949643e7b1a26efa595b445efc 475 Gene3D G3DSA:3.40.50.2300 72 394 5.6E-69 T 11-10-2018 AMD27_14300 a59975949643e7b1a26efa595b445efc 475 SUPERFAMILY SSF53822 72 438 2.03E-46 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMD27_14300 a59975949643e7b1a26efa595b445efc 475 Gene3D G3DSA:3.40.50.2300 183 324 5.6E-69 T 11-10-2018 AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 SUPERFAMILY SSF53850 88 292 4.16E-37 T 11-10-2018 AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 Gene3D G3DSA:3.40.190.10 168 266 4.3E-47 T 11-10-2018 AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 Pfam PF03466 LysR substrate binding domain 97 288 1.0E-18 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 Gene3D G3DSA:3.40.190.10 93 290 4.3E-47 T 11-10-2018 AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 Gene3D G3DSA:1.10.10.10 1 86 5.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 62 5.0E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_09820 05f56a08fed9c421ff3323f72618cd97 302 SUPERFAMILY SSF46785 4 83 1.73E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 Gene3D G3DSA:3.40.190.290 92 292 1.5E-41 T 11-10-2018 AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 SUPERFAMILY SSF46785 1 111 1.36E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 Gene3D G3DSA:1.10.10.10 1 86 5.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 Pfam PF03466 LysR substrate binding domain 92 290 9.9E-50 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_12295 6805b5482b8ab98f5920268256bdc2e2 292 SUPERFAMILY SSF53850 93 290 1.9E-44 T 11-10-2018 AMD27_02760 bb0120925950f947399b5c807af6aea9 178 Pfam PF01202 Shikimate kinase 11 56 9.8E-5 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMD27_02760 bb0120925950f947399b5c807af6aea9 178 SUPERFAMILY SSF52540 2 119 2.77E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02760 bb0120925950f947399b5c807af6aea9 178 Gene3D G3DSA:3.40.50.300 1 153 8.1E-16 T 11-10-2018 AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 Gene3D G3DSA:3.50.50.60 2 240 2.3E-68 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 9 205 7.6E-20 T 11-10-2018 AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 137 1.3E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 168 192 1.3E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.3E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 Gene3D G3DSA:3.50.50.60 312 483 1.8E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 SUPERFAMILY SSF51905 5 229 6.8E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04620 119a3adcb7668a94f8ae6ff5f9e3a7cd 484 SUPERFAMILY SSF51905 276 463 4.86E-16 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_00130 e03044e884278a2856497ccf92205269 449 Pfam PF07690 Major Facilitator Superfamily 29 316 1.9E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_00130 e03044e884278a2856497ccf92205269 449 Gene3D G3DSA:1.20.1250.20 21 433 1.2E-74 T 11-10-2018 AMD27_00130 e03044e884278a2856497ccf92205269 449 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_00130 e03044e884278a2856497ccf92205269 449 SUPERFAMILY SSF103473 9 430 1.57E-83 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_00130 e03044e884278a2856497ccf92205269 449 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 7 403 1.6E-127 T 11-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 AMD27_10645 00249e47d67581e92035e87e354ee635 204 Gene3D G3DSA:1.10.10.10 127 191 1.2E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10645 00249e47d67581e92035e87e354ee635 204 SUPERFAMILY SSF88946 45 101 2.43E-7 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_10645 00249e47d67581e92035e87e354ee635 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 50 187 8.0E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMD27_10645 00249e47d67581e92035e87e354ee635 204 Pfam PF04542 Sigma-70 region 2 46 95 2.1E-4 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_10645 00249e47d67581e92035e87e354ee635 204 SUPERFAMILY SSF88659 112 190 1.61E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMD27_10645 00249e47d67581e92035e87e354ee635 204 Pfam PF08281 Sigma-70, region 4 133 182 1.0E-15 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_16655 dc57c784df8f93dc31f6c0291c5b3122 332 SUPERFAMILY SSF53067 10 160 5.18E-14 T 11-10-2018 AMD27_16655 dc57c784df8f93dc31f6c0291c5b3122 332 Gene3D G3DSA:3.30.420.40 173 304 1.2E-23 T 11-10-2018 AMD27_16655 dc57c784df8f93dc31f6c0291c5b3122 332 Gene3D G3DSA:3.30.420.40 10 172 1.8E-6 T 11-10-2018 AMD27_16655 dc57c784df8f93dc31f6c0291c5b3122 332 Pfam PF06406 StbA protein 172 317 4.1E-7 T 11-10-2018 IPR009440 Plasmid segregation protein ParM/StbA AMD27_16655 dc57c784df8f93dc31f6c0291c5b3122 332 SUPERFAMILY SSF53067 174 320 2.9E-19 T 11-10-2018 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 Pfam PF13365 Trypsin-like peptidase domain 115 248 2.3E-31 T 11-10-2018 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 324 336 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 124 136 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 241 258 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 184 208 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 PRINTS PR00834 HtrA/DegQ protease family signature 145 165 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 SUPERFAMILY SSF50494 58 284 2.0E-62 T 11-10-2018 IPR009003 Peptidase S1, PA clan AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 Gene3D G3DSA:2.40.10.120 58 280 1.8E-76 T 11-10-2018 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 Gene3D G3DSA:2.30.42.10 283 388 4.5E-22 T 11-10-2018 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 SMART SM00228 287 366 1.6E-19 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 Pfam PF13180 PDZ domain 287 374 4.0E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_11185 485544cf4d615346b4d6174fc06f56c5 393 SUPERFAMILY SSF50156 258 367 2.63E-23 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_12330 d0118e643bfc1051738cf5fce556f25b 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 96 1.2E-22 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMD27_12330 d0118e643bfc1051738cf5fce556f25b 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 18.135 T 11-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMD27_01270 d9b59c8ad7221eeabe16188c8b565791 476 Pfam PF13726 Na+-H+ antiporter family 2 88 5.6E-33 T 11-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal AMD27_01270 d9b59c8ad7221eeabe16188c8b565791 476 Pfam PF03553 Na+/H+ antiporter family 150 470 2.4E-66 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AMD27_00885 cea78dcc5313629490af4d740b8f7d09 438 Gene3D G3DSA:2.40.160.10 12 438 3.3E-133 T 11-10-2018 IPR023614 Porin domain superfamily AMD27_00885 cea78dcc5313629490af4d740b8f7d09 438 SUPERFAMILY SSF56935 219 418 5.04E-5 T 11-10-2018 AMD27_00885 cea78dcc5313629490af4d740b8f7d09 438 Pfam PF03573 outer membrane porin, OprD family 30 436 4.9E-107 T 11-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 AMD27_10725 11889f9bc898d319cc02f1ae77cfa89c 203 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 108 199 1.9E-42 T 11-10-2018 IPR012997 Rare lipoprotein A AMD27_10725 11889f9bc898d319cc02f1ae77cfa89c 203 Pfam PF03330 Lytic transglycolase 106 194 1.4E-25 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMD27_10725 11889f9bc898d319cc02f1ae77cfa89c 203 Gene3D G3DSA:2.40.40.10 105 199 3.9E-39 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMD27_10725 11889f9bc898d319cc02f1ae77cfa89c 203 SUPERFAMILY SSF50685 106 199 1.26E-13 T 11-10-2018 IPR036908 RlpA-like domain superfamily AMD27_10725 11889f9bc898d319cc02f1ae77cfa89c 203 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 27 198 24.657 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 Gene3D G3DSA:3.40.50.1100 25 321 2.4E-122 T 11-10-2018 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 SUPERFAMILY SSF53686 18 325 1.31E-96 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 TIGRFAM TIGR01139 cysK: cysteine synthase A 22 326 1.0E-130 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 TIGRFAM TIGR01136 cysKM: cysteine synthase 22 326 6.0E-126 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 46 64 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 Gene3D G3DSA:3.40.50.1100 58 160 2.4E-122 T 11-10-2018 AMD27_07650 e1b8175056ed9b3a5a59612dc6cb049a 332 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 315 3.5E-66 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 SUPERFAMILY SSF75217 73 234 9.59E-47 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 PIRSF PIRSF015601 1 236 3.4E-59 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 SUPERFAMILY SSF88697 1 67 2.65E-17 T 11-10-2018 IPR015947 PUA-like superfamily AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 Gene3D G3DSA:3.40.1280.10 73 236 1.2E-51 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 235 1.2E-59 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 Gene3D G3DSA:2.40.240.20 1 67 2.3E-21 T 11-10-2018 AMD27_10855 7275b6693e672f8b5f468a083a10ebaa 236 Pfam PF04452 RNA methyltransferase 16 234 1.4E-68 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_14295 e4d0bb961487aface0c6bb06c898c0f8 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 331 4.1E-29 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMD27_02525 8712a0ea5c23ad9728cb50e88410fb27 416 PIRSF PIRSF037118 1 415 3.0E-141 T 11-10-2018 IPR017115 Tellurite resistance, TerA AMD27_02525 8712a0ea5c23ad9728cb50e88410fb27 416 Gene3D G3DSA:2.60.60.30 18 167 1.9E-30 T 11-10-2018 AMD27_02525 8712a0ea5c23ad9728cb50e88410fb27 416 Pfam PF02342 TerD domain 6 168 6.4E-28 T 11-10-2018 IPR003325 TerD domain AMD27_13085 28f33876ea66ed7a0f1fc25a6346d327 353 PIRSF PIRSF018494 4 353 3.2E-125 T 11-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria AMD27_13085 28f33876ea66ed7a0f1fc25a6346d327 353 Pfam PF04860 Phage portal protein 98 336 1.6E-14 T 11-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein AMD27_13085 28f33876ea66ed7a0f1fc25a6346d327 353 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 60 337 2.1E-65 T 11-10-2018 IPR006430 Phage portal protein PBSX family AMD27_09250 a0d910830389781a1fb37a5bff744536 571 SUPERFAMILY SSF52540 125 398 3.19E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09250 a0d910830389781a1fb37a5bff744536 571 Pfam PF05970 PIF1-like helicase 194 297 7.2E-8 T 11-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 AMD27_09250 a0d910830389781a1fb37a5bff744536 571 Pfam PF05970 PIF1-like helicase 11 184 9.4E-37 T 11-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 AMD27_09250 a0d910830389781a1fb37a5bff744536 571 Gene3D G3DSA:3.40.50.300 1 195 1.4E-34 T 11-10-2018 AMD27_09250 a0d910830389781a1fb37a5bff744536 571 Pfam PF14493 Helix-turn-helix domain 467 567 1.4E-15 T 11-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMD27_09250 a0d910830389781a1fb37a5bff744536 571 SUPERFAMILY SSF52540 3 178 1.06E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09250 a0d910830389781a1fb37a5bff744536 571 SMART SM00382 12 156 4.5E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 337 37.715 T 11-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 Gene3D G3DSA:3.40.50.150 151 340 3.5E-40 T 11-10-2018 AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 SUPERFAMILY SSF53335 148 330 1.78E-23 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 266 272 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 Pfam PF05175 Methyltransferase small domain 164 333 3.7E-52 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 Gene3D G3DSA:3.40.50.150 1 150 3.0E-38 T 11-10-2018 AMD27_12785 4268fc163a8fe429e76cc2f29169f698 341 Pfam PF08468 Methyltransferase small domain N-terminal 5 156 5.9E-42 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 AMD27_08900 457647d979d1ef62c60daf668c489430 184 Gene3D G3DSA:1.10.132.20 12 181 9.5E-61 T 11-10-2018 AMD27_08900 457647d979d1ef62c60daf668c489430 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 184 25.032 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMD27_08900 457647d979d1ef62c60daf668c489430 184 SUPERFAMILY SSF55194 1 184 2.88E-66 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AMD27_08900 457647d979d1ef62c60daf668c489430 184 Gene3D G3DSA:3.30.1360.40 31 104 9.5E-61 T 11-10-2018 AMD27_08900 457647d979d1ef62c60daf668c489430 184 Pfam PF01765 Ribosome recycling factor 21 182 4.1E-58 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AMD27_08900 457647d979d1ef62c60daf668c489430 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 184 6.1E-63 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMD27_04125 0a3929c8c9a60bea80881d14a542349c 204 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMD27_04125 0a3929c8c9a60bea80881d14a542349c 204 Gene3D G3DSA:3.40.1050.10 1 203 2.5E-61 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMD27_04125 0a3929c8c9a60bea80881d14a542349c 204 SUPERFAMILY SSF53056 3 203 7.46E-51 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMD27_04125 0a3929c8c9a60bea80881d14a542349c 204 Pfam PF00484 Carbonic anhydrase 45 199 6.1E-38 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMD27_04125 0a3929c8c9a60bea80881d14a542349c 204 SMART SM00947 38 203 5.4E-52 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMD27_10880 3516972cb154dc9b2495c4eaef20acb2 210 Pfam PF01810 LysE type translocator 15 190 2.0E-16 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_13115 06fd8a1169821f63a4f698f4fedeff96 67 Pfam PF05489 Phage Tail Protein X 3 55 1.2E-9 T 11-10-2018 IPR008861 Phage Tail Protein X-like AMD27_13115 06fd8a1169821f63a4f698f4fedeff96 67 Gene3D G3DSA:3.10.350.10 2 67 9.2E-15 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_17655 2c86afc860acd80f123b6a078f3df2dc 233 Gene3D G3DSA:2.160.20.120 125 232 1.7E-31 T 11-10-2018 AMD27_17655 2c86afc860acd80f123b6a078f3df2dc 233 Pfam PF10988 Putative auto-transporter adhesin, head GIN domain 56 217 2.1E-32 T 11-10-2018 IPR021255 Putative auto-transporter adhesin, head GIN domain AMD27_17655 2c86afc860acd80f123b6a078f3df2dc 233 Gene3D G3DSA:2.160.20.120 38 124 1.4E-7 T 11-10-2018 AMD27_03465 0202fbd44bb9e053314af0c240dce2ae 255 Gene3D G3DSA:3.40.1190.20 1 237 5.6E-77 T 11-10-2018 IPR029056 Ribokinase-like AMD27_03465 0202fbd44bb9e053314af0c240dce2ae 255 SUPERFAMILY SSF53613 2 240 7.86E-59 T 11-10-2018 IPR029056 Ribokinase-like AMD27_03465 0202fbd44bb9e053314af0c240dce2ae 255 Pfam PF08543 Phosphomethylpyrimidine kinase 12 240 5.9E-68 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMD27_00345 a1761a28e412e7df7646fd966fda6aab 235 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 144 232 1.5E-31 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_00345 a1761a28e412e7df7646fd966fda6aab 235 Gene3D G3DSA:1.10.287.460 42 97 1.3E-12 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 AMD27_00345 a1761a28e412e7df7646fd966fda6aab 235 Gene3D G3DSA:3.10.50.40 98 235 5.1E-59 T 11-10-2018 AMD27_00345 a1761a28e412e7df7646fd966fda6aab 235 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 41 137 4.8E-24 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AMD27_00345 a1761a28e412e7df7646fd966fda6aab 235 SUPERFAMILY SSF54534 43 234 1.96E-59 T 11-10-2018 AMD27_10375 66d336af1502c2ce7a5a3d5df4b9aa6d 267 Pfam PF00561 alpha/beta hydrolase fold 16 125 1.3E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_10375 66d336af1502c2ce7a5a3d5df4b9aa6d 267 Gene3D G3DSA:3.40.50.1820 7 263 3.7E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_10375 66d336af1502c2ce7a5a3d5df4b9aa6d 267 TIGRFAM TIGR03611 RutD: pyrimidine utilization protein D 2 262 1.2E-88 T 11-10-2018 IPR019913 Pyrimidine utilisation protein RutD GO:0006212|GO:0016811 AMD27_10375 66d336af1502c2ce7a5a3d5df4b9aa6d 267 SUPERFAMILY SSF53474 9 260 1.36E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12220 ff1bf206b28e6c57a40a851e24aafbf5 226 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 11 213 2.4E-72 T 11-10-2018 IPR008517 Protein of unknown function DUF799 AMD27_12220 ff1bf206b28e6c57a40a851e24aafbf5 226 Gene3D G3DSA:3.40.50.10610 26 190 1.1E-59 T 11-10-2018 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 12 165 2.7E-35 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 PIRSF PIRSF000103 6 291 8.2E-70 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 Gene3D G3DSA:3.40.50.720 2 167 6.1E-39 T 11-10-2018 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 SUPERFAMILY SSF51735 11 167 1.37E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 Gene3D G3DSA:1.10.1040.10 168 290 2.9E-26 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 SUPERFAMILY SSF48179 171 288 2.27E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_12440 fba90319a7ea1a1b6f20059ee7845d43 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 287 7.1E-15 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMD27_05805 08af8810ca8351db40e97d738d97a417 296 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 26 285 1.2E-126 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AMD27_05805 08af8810ca8351db40e97d738d97a417 296 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 25 283 6.4E-98 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMD27_05805 08af8810ca8351db40e97d738d97a417 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 281 2.3E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_05805 08af8810ca8351db40e97d738d97a417 296 SUPERFAMILY SSF161098 25 279 3.53E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_05805 08af8810ca8351db40e97d738d97a417 296 Gene3D G3DSA:1.10.3720.10 27 287 4.6E-62 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Pfam PF14450 Cell division protein FtsA 9 179 1.2E-9 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 SMART SM00842 8 197 4.7E-60 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Gene3D G3DSA:3.90.640.10 236 299 3.1E-80 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 413 22.111 T 11-10-2018 IPR020823 Cell division protein FtsA AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 SUPERFAMILY SSF53067 199 380 3.71E-33 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Gene3D G3DSA:3.30.1490.110 83 170 3.1E-80 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 3.5E-8 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Gene3D G3DSA:3.30.420.40 11 355 3.1E-80 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 SUPERFAMILY SSF53067 8 196 3.45E-35 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 380 1.4E-88 T 11-10-2018 IPR020823 Cell division protein FtsA AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 PIRSF PIRSF003101 1 420 9.8E-101 T 11-10-2018 IPR020823 Cell division protein FtsA AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Pfam PF14450 Cell division protein FtsA 208 377 1.3E-17 T 11-10-2018 AMD27_15310 b9c7c6c4a6f7f70778ca81665ea046bd 420 Gene3D G3DSA:3.30.420.40 198 351 3.1E-80 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 Gene3D G3DSA:1.10.3860.10 1 416 2.8E-127 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 Pfam PF00375 Sodium:dicarboxylate symporter family 3 403 3.0E-120 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 47 67 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 PRINTS PR00173 Glutamate-aspartate symporter signature 229 248 1.4E-56 T 11-10-2018 AMD27_14130 08e4a9a42b240403870b5760014d3125 417 SUPERFAMILY SSF118215 3 404 4.84E-108 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_16380 87d1ccf776b00a777d1ba9d73d91f3e6 149 SUPERFAMILY SSF109604 2 114 1.26E-19 T 11-10-2018 AMD27_16380 87d1ccf776b00a777d1ba9d73d91f3e6 149 Gene3D G3DSA:1.10.3210.10 1 148 6.3E-20 T 11-10-2018 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 Gene3D G3DSA:2.40.50.100 75 221 5.2E-51 T 11-10-2018 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 SUPERFAMILY SSF111369 66 279 8.76E-20 T 11-10-2018 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 Gene3D G3DSA:2.40.30.170 61 296 5.2E-51 T 11-10-2018 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 Gene3D G3DSA:2.40.420.20 55 354 5.2E-51 T 11-10-2018 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 53 352 1.3E-54 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 75 270 1.7E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMD27_12145 a590cc086fa4e6ec90a20c12ee09fd89 373 Gene3D G3DSA:1.10.287.470 109 182 5.2E-51 T 11-10-2018 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 PIRSF PIRSF002181 1 142 1.9E-49 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.411 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 Pfam PF00572 Ribosomal protein L13 15 138 2.4E-55 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 Gene3D G3DSA:3.90.1180.10 1 142 6.5E-61 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 8.3E-63 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02995 c4e2f9566826fbbc6fa9117003eb65ef 142 SUPERFAMILY SSF52161 1 140 1.01E-57 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 522 2.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Pfam PF01627 Hpt domain 834 926 2.8E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SUPERFAMILY SSF47226 770 892 4.97E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SMART SM00387 403 524 1.2E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Pfam PF00072 Response regulator receiver domain 667 787 2.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Pfam PF00512 His Kinase A (phospho-acceptor) domain 291 356 6.4E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Gene3D G3DSA:3.40.50.2300 655 793 2.1E-38 T 11-10-2018 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SUPERFAMILY SSF55874 345 520 2.36E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SMART SM00448 665 787 3.2E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SMART SM00073 824 921 1.9E-5 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Gene3D G3DSA:1.10.287.130 253 354 5.0E-27 T 11-10-2018 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 1.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 1.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 1.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SMART SM00388 290 356 1.2E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SUPERFAMILY SSF52172 664 791 1.57E-34 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Gene3D G3DSA:3.30.565.10 355 528 1.4E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 SUPERFAMILY SSF47384 276 357 2.94E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMD27_02610 34c9c9759bc2059ed460bd1d4517c593 934 Gene3D G3DSA:1.20.120.160 811 934 3.4E-24 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMD27_05475 e160a72911702c0710f34b9e35601b93 96 Gene3D G3DSA:1.10.260.40 36 92 2.2E-5 T 11-10-2018 AMD27_05475 e160a72911702c0710f34b9e35601b93 96 SUPERFAMILY SSF47413 27 91 7.31E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_05475 e160a72911702c0710f34b9e35601b93 96 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 7 93 5.2E-38 T 11-10-2018 IPR014057 Uncharacterized protein HI1420 AMD27_05475 e160a72911702c0710f34b9e35601b93 96 Pfam PF01381 Helix-turn-helix 47 92 1.9E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 SUPERFAMILY SSF51735 159 315 4.1E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 152 2.5E-46 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 SUPERFAMILY SSF69742 1 153 3.92E-45 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 95 118 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 168 306 2.4E-38 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 PIRSF PIRSF000445 1 427 3.2E-138 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Gene3D G3DSA:3.40.50.720 157 313 2.9E-39 T 11-10-2018 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Gene3D G3DSA:3.30.460.30 2 154 4.6E-52 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 27.761 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 416 3.1E-117 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 419 4.4E-14 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04515 a273abd72ba465cbfdbafb386be327a3 427 SUPERFAMILY SSF69075 317 413 1.01E-18 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMD27_04055 958e77fdf5a36b631b39067540551f81 382 SUPERFAMILY SSF55073 211 361 1.65E-44 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_04055 958e77fdf5a36b631b39067540551f81 382 Gene3D G3DSA:3.30.70.270 192 363 4.2E-54 T 11-10-2018 AMD27_04055 958e77fdf5a36b631b39067540551f81 382 SMART SM00267 195 363 1.7E-58 T 11-10-2018 IPR000160 GGDEF domain AMD27_04055 958e77fdf5a36b631b39067540551f81 382 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 202 361 1.3E-51 T 11-10-2018 IPR000160 GGDEF domain AMD27_04055 958e77fdf5a36b631b39067540551f81 382 Pfam PF00990 Diguanylate cyclase, GGDEF domain 207 359 1.1E-46 T 11-10-2018 IPR000160 GGDEF domain AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 SUPERFAMILY SSF52540 832 1146 4.39E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 SUPERFAMILY SSF52540 1334 1505 4.96E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 Gene3D G3DSA:3.40.50.150 102 301 1.0E-22 T 11-10-2018 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 Gene3D G3DSA:3.40.50.300 1346 1504 1.2E-11 T 11-10-2018 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 SUPERFAMILY SSF53335 58 315 2.34E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 184 196 5.6E-12 T 11-10-2018 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 210 234 5.6E-12 T 11-10-2018 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 99 115 5.6E-12 T 11-10-2018 AMD27_16760 bea094f8d21d5a35adf814c64a22fee9 1924 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 125 139 5.6E-12 T 11-10-2018 AMD27_05550 530403482d3d88dd7985281573bce7dc 364 Pfam PF00487 Fatty acid desaturase 76 340 7.5E-27 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMD27_09585 98c1463e6182ac787868fe92eabaf717 144 Gene3D G3DSA:3.30.530.20 1 143 1.6E-16 T 11-10-2018 IPR023393 START-like domain superfamily AMD27_09585 98c1463e6182ac787868fe92eabaf717 144 SUPERFAMILY SSF55961 2 142 3.23E-16 T 11-10-2018 AMD27_09585 98c1463e6182ac787868fe92eabaf717 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 143 1.0E-10 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 SUPERFAMILY SSF51430 1 319 4.32E-96 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 PRINTS PR00069 Aldo-keto reductase signature 48 72 7.3E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 PRINTS PR00069 Aldo-keto reductase signature 112 130 7.3E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 PRINTS PR00069 Aldo-keto reductase signature 143 160 7.3E-8 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 Gene3D G3DSA:3.20.20.100 1 343 1.5E-128 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMD27_09070 5aca089d61800bc836dadbe4d45e6d66 352 Pfam PF00248 Aldo/keto reductase family 16 318 3.6E-70 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMD27_00590 03b532d7dcd09c89cdc41cb18634fa4b 206 PIRSF PIRSF006324 1 206 1.4E-48 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_00590 03b532d7dcd09c89cdc41cb18634fa4b 206 Pfam PF01810 LysE type translocator 16 201 7.2E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 6.4E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 33 122 4.3E-6 T 11-10-2018 IPR031982 Type IV minor pilin ComP AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 47 65 1.4E-11 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 11 36 1.4E-11 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 SUPERFAMILY SSF54523 12 92 1.8E-19 T 11-10-2018 AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 Gene3D G3DSA:3.30.700.10 12 149 5.2E-22 T 11-10-2018 AMD27_01620 6cfa1fa0b5574d4b79895873fb948808 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 31 1.3E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Gene3D G3DSA:2.40.110.10 136 251 1.6E-41 T 11-10-2018 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 399 4.5E-30 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 133 1.1E-13 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 SUPERFAMILY SSF56645 2 264 1.31E-59 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Gene3D G3DSA:1.10.540.10 1 135 1.5E-46 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Gene3D G3DSA:1.20.140.10 252 409 1.1E-32 T 11-10-2018 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 239 1.8E-18 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_08155 3259486e9d2aed6ec35137dfe035c341 413 SUPERFAMILY SSF47203 250 404 3.06E-37 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_09315 2a961c554c8a935932f7d64165c85ce6 238 Gene3D G3DSA:3.40.50.880 3 234 1.5E-51 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_09315 2a961c554c8a935932f7d64165c85ce6 238 SUPERFAMILY SSF52317 48 233 5.2E-44 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_09315 2a961c554c8a935932f7d64165c85ce6 238 Pfam PF00117 Glutamine amidotransferase class-I 24 189 1.7E-17 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 Gene3D G3DSA:3.40.50.12780 8 441 1.2E-105 T 11-10-2018 AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 Gene3D G3DSA:3.30.300.310 442 545 1.7E-33 T 11-10-2018 AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 Pfam PF00501 AMP-binding enzyme 25 446 7.2E-96 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 SUPERFAMILY SSF56801 12 542 5.36E-143 T 11-10-2018 AMD27_02690 af74411526e815f93d8f809d002fc2d6 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 529 7.6E-19 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 128 140 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Gene3D G3DSA:2.40.110.10 125 238 4.9E-38 T 11-10-2018 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 122 1.9E-26 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Gene3D G3DSA:1.10.540.10 6 124 1.2E-32 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 385 5.6E-44 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Gene3D G3DSA:1.20.140.10 239 387 3.2E-42 T 11-10-2018 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 SUPERFAMILY SSF56645 5 244 4.71E-75 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 SUPERFAMILY SSF47203 232 385 5.15E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_02915 87601498cabcc32e8e581a0719d9a77c 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 221 1.9E-22 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 SUPERFAMILY SSF51717 12 282 1.14E-97 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 Pfam PF00809 Pterin binding enzyme 26 265 1.3E-84 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 25 40 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 Gene3D G3DSA:3.20.20.20 3 283 1.0E-112 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMD27_11580 c5ae20226767a7b3b8d9aada67a471be 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 24 279 3.6E-99 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AMD27_05000 4523091740361104adc93e6e3a07e8ae 288 Pfam PF00892 EamA-like transporter family 13 137 9.6E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_05000 4523091740361104adc93e6e3a07e8ae 288 Pfam PF00892 EamA-like transporter family 149 284 1.1E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_05000 4523091740361104adc93e6e3a07e8ae 288 SUPERFAMILY SSF103481 41 142 1.7E-12 T 11-10-2018 AMD27_05000 4523091740361104adc93e6e3a07e8ae 288 SUPERFAMILY SSF103481 190 286 2.22E-11 T 11-10-2018 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 Hamap MF_00641 Malate synthase G [glcB]. 1 720 366.713 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 715 0.0 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 Gene3D G3DSA:1.20.1220.12 579 720 1.0E-66 T 11-10-2018 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 Gene3D G3DSA:2.170.170.11 132 261 1.8E-258 T 11-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 Gene3D G3DSA:3.20.20.360 10 578 1.8E-258 T 11-10-2018 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 SUPERFAMILY SSF51645 3 716 1.83E-286 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMD27_06730 026fed93d938251bacea0e4a29a99d87 720 Pfam PF01274 Malate synthase 17 685 1.0E-154 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 Gene3D G3DSA:3.30.420.10 1 165 7.8E-52 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 Pfam PF00075 RNase H 3 135 3.6E-41 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 SUPERFAMILY SSF53098 272 448 7.59E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 Gene3D G3DSA:3.30.420.10 273 453 6.3E-47 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 Hamap MF_00042 Ribonuclease H [rnhA]. 1 144 26.985 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 Pfam PF00929 Exonuclease 281 440 7.7E-30 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 282 486 7.8E-57 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 279 502 3.8E-77 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 SUPERFAMILY SSF53098 2 137 1.07E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_04925 e8d8ecc2d01b288ca8c58be0c2d707ea 505 SMART SM00479 279 449 8.4E-39 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Pfam PF01966 HD domain 230 310 5.2E-5 T 11-10-2018 IPR006674 HD domain AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Gene3D G3DSA:1.10.3090.10 122 413 2.0E-43 T 11-10-2018 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 SUPERFAMILY SSF81891 120 360 1.44E-51 T 11-10-2018 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Pfam PF01743 Poly A polymerase head domain 3 122 5.3E-19 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 406 52.023 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Gene3D G3DSA:3.30.460.10 1 121 2.5E-29 T 11-10-2018 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 SUPERFAMILY SSF81301 1 118 1.42E-30 T 11-10-2018 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 8.1E-16 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 Hamap MF_01262 CCA-adding enzyme [cca]. 1 400 40.349 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMD27_10870 a3252c241e553748cdc70db3272445ba 413 PIRSF PIRSF000813 1 407 4.3E-187 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 PIRSF PIRSF000171 8 613 7.5E-35 T 11-10-2018 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 53 62 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 Pfam PF02910 Fumarate reductase flavoprotein C-term 496 631 3.5E-34 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 19 631 8.2E-224 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 SUPERFAMILY SSF51905 14 470 3.36E-78 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 Gene3D G3DSA:1.20.58.100 467 580 2.7E-30 T 11-10-2018 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 Pfam PF00890 FAD binding domain 19 437 2.2E-113 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 SUPERFAMILY SSF46977 486 632 4.71E-39 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04650 39bf2fa723a76b0d5b63c196eed57bec 632 SUPERFAMILY SSF56425 246 364 3.44E-41 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_00205 0a34e6deec8ffd4640c9bda171c28619 245 Pfam PF01925 Sulfite exporter TauE/SafE 6 237 5.6E-28 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_17470 5581788bc30c650de12491f8234b9f02 219 Pfam PF01464 Transglycosylase SLT domain 99 196 8.8E-24 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_17470 5581788bc30c650de12491f8234b9f02 219 SUPERFAMILY SSF53955 95 214 8.32E-30 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_17470 5581788bc30c650de12491f8234b9f02 219 Gene3D G3DSA:1.10.530.10 89 217 4.5E-23 T 11-10-2018 AMD27_15205 bf89448f16d0d0848bf135b3daa80b61 238 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 230 5.9E-30 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_15205 bf89448f16d0d0848bf135b3daa80b61 238 PIRSF PIRSF015601 1 237 8.2E-45 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_15205 bf89448f16d0d0848bf135b3daa80b61 238 Gene3D G3DSA:3.40.1280.10 6 237 2.7E-29 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_15205 bf89448f16d0d0848bf135b3daa80b61 238 Pfam PF04452 RNA methyltransferase 19 233 2.8E-42 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMD27_15205 bf89448f16d0d0848bf135b3daa80b61 238 SUPERFAMILY SSF75217 73 234 7.41E-33 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 Pfam PF00970 Oxidoreductase FAD-binding domain 44 134 5.7E-5 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 SUPERFAMILY SSF52343 123 256 9.43E-27 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 Gene3D G3DSA:2.40.30.10 36 133 4.0E-12 T 11-10-2018 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 Pfam PF00175 Oxidoreductase NAD-binding domain 145 245 7.4E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 SUPERFAMILY SSF63380 32 137 6.64E-14 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 Gene3D G3DSA:3.10.20.30 265 355 7.4E-13 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 129 138 5.8E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 144 163 5.8E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 232 240 5.8E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 87 94 5.8E-7 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 SUPERFAMILY SSF54292 255 355 7.08E-15 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_05545 609f8c014d17ed22f86e1e0f3effb5fb 355 Gene3D G3DSA:3.40.50.80 134 264 1.5E-26 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_06160 12d00613a17c18d3a01bd9cd36087428 221 Gene3D G3DSA:3.40.50.150 1 221 1.0E-64 T 11-10-2018 AMD27_06160 12d00613a17c18d3a01bd9cd36087428 221 Pfam PF01596 O-methyltransferase 20 198 2.7E-40 T 11-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AMD27_06160 12d00613a17c18d3a01bd9cd36087428 221 SUPERFAMILY SSF53335 5 220 4.06E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 SUPERFAMILY SSF82784 1 126 4.84E-20 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 205 540 9.9E-72 T 11-10-2018 IPR003776 YcaO-like domain AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 Gene3D G3DSA:3.30.300.20 2 128 1.1E-15 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 159 550 3.2E-95 T 11-10-2018 IPR003776 YcaO-like domain AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 Pfam PF02566 OsmC-like protein 32 126 4.8E-10 T 11-10-2018 IPR003718 OsmC/Ohr family AMD27_07905 d59e54a5bd7cbdc1e0b32fad5bd2c73c 734 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 728 0.0 T 11-10-2018 IPR019938 YcaO domain protein AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 SUPERFAMILY SSF50249 39 118 3.33E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 Pfam PF10150 Ribonuclease E/G family 115 387 2.2E-101 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 Pfam PF00575 S1 RNA binding domain 38 111 3.0E-5 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 420 9.8E-153 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 Gene3D G3DSA:2.40.50.140 31 118 9.0E-25 T 11-10-2018 AMD27_11860 92c97e318db5c0b5756e2dd8f3bc4c49 484 SMART SM00316 37 113 2.0E-12 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 SUPERFAMILY SSF46689 258 306 4.93E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 SUPERFAMILY SSF46689 205 256 3.27E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 304 9.9E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 288 9.9E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 SMART SM00342 221 304 4.0E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 Gene3D G3DSA:1.10.10.60 200 310 9.7E-26 T 11-10-2018 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 258 300 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 Pfam PF12833 Helix-turn-helix domain 227 305 6.8E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_08715 7af72c40a4099d82a9d7f17333bed227 324 Pfam PF12852 Cupin 2 189 5.4E-24 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 SUPERFAMILY SSF51261 53 278 1.41E-43 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 Pfam PF01476 LysM domain 54 96 7.0E-12 T 11-10-2018 IPR018392 LysM domain AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 SMART SM00257 53 97 4.4E-10 T 11-10-2018 IPR018392 LysM domain AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 Gene3D G3DSA:3.10.350.10 48 110 2.6E-13 T 11-10-2018 IPR036779 LysM domain superfamily AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 Gene3D G3DSA:2.70.70.10 147 278 1.3E-30 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_10485 59cf1ccc8120761c9a9f9f2e1bfca151 279 Pfam PF01551 Peptidase family M23 182 274 9.0E-27 T 11-10-2018 IPR016047 Peptidase M23 AMD27_09605 39bf1bb50a43ad3cb04b1212bbad8163 198 SUPERFAMILY SSF55620 1 147 1.0E-30 T 11-10-2018 AMD27_09605 39bf1bb50a43ad3cb04b1212bbad8163 198 Gene3D G3DSA:3.30.479.10 1 145 7.4E-23 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 AMD27_09605 39bf1bb50a43ad3cb04b1212bbad8163 198 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 143 7.5E-26 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AMD27_15580 f4021050b16cf588fb638f8e752f5469 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 8.8E-53 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMD27_15580 f4021050b16cf588fb638f8e752f5469 146 Gene3D G3DSA:3.50.80.10 1 145 1.9E-52 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AMD27_15580 f4021050b16cf588fb638f8e752f5469 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 31.832 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMD27_15580 f4021050b16cf588fb638f8e752f5469 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 7.5E-49 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMD27_15580 f4021050b16cf588fb638f8e752f5469 146 SUPERFAMILY SSF69500 1 144 3.4E-53 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Pfam PF12836 Helix-hairpin-helix motif 482 546 1.5E-24 T 11-10-2018 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SUPERFAMILY SSF47781 461 549 1.78E-25 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SUPERFAMILY SSF47781 552 623 7.11E-19 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Pfam PF00575 S1 RNA binding domain 641 711 3.5E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Pfam PF16921 Tex protein YqgF-like domain 317 442 3.7E-49 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Gene3D G3DSA:1.10.3500.10 112 489 1.3E-133 T 11-10-2018 IPR023323 Tex-like domain superfamily AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SUPERFAMILY SSF53098 312 460 7.59E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SUPERFAMILY SSF158832 1 311 1.28E-88 T 11-10-2018 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Gene3D G3DSA:1.10.150.310 490 621 1.1E-48 T 11-10-2018 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Pfam PF09371 Tex-like protein N-terminal domain 8 187 6.5E-54 T 11-10-2018 IPR018974 Tex-like protein, N-terminal AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Gene3D G3DSA:2.40.50.140 622 714 1.8E-28 T 11-10-2018 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SUPERFAMILY SSF50249 628 713 5.3E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Gene3D G3DSA:1.10.10.650 1 108 5.8E-36 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SMART SM00732 316 415 9.0E-31 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 Gene3D G3DSA:3.30.420.140 315 442 1.3E-133 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMD27_14745 9fcf3b6a8a0b92b8d50253c086fd528d 783 SMART SM00316 640 711 2.7E-24 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 SUPERFAMILY SSF52540 3 233 5.68E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 Pfam PF00005 ABC transporter 19 167 5.9E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 Gene3D G3DSA:3.40.50.300 1 245 2.2E-74 T 11-10-2018 AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 PIRSF PIRSF039085 1 245 5.2E-104 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMD27_03295 7e21b2a57c2f20acd59b7820552bf502 247 SMART SM00382 28 215 6.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 SUPERFAMILY SSF111369 195 303 2.09E-13 T 11-10-2018 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 Gene3D G3DSA:2.40.30.170 264 381 1.4E-32 T 11-10-2018 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 Pfam PF13533 Biotin-lipoyl like 64 113 1.0E-14 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 Pfam PF13437 HlyD family secretion protein 250 361 7.2E-15 T 11-10-2018 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 Gene3D G3DSA:1.10.287.470 133 216 1.2E-12 T 11-10-2018 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 261 282 2.2E-6 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 382 2.2E-6 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 2.2E-6 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 SUPERFAMILY SSF111369 62 161 2.75E-11 T 11-10-2018 AMD27_03745 d6a87cd351b0f47f8fc9d939dfe01371 382 Gene3D G3DSA:2.40.50.100 65 132 3.0E-12 T 11-10-2018 AMD27_01145 d83473d49dc3463de8cc10c887ab3eb3 107 SMART SM00528 62 107 8.3E-15 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AMD27_01145 d83473d49dc3463de8cc10c887ab3eb3 107 Gene3D G3DSA:4.10.430.10 56 107 2.9E-19 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 AMD27_01145 d83473d49dc3463de8cc10c887ab3eb3 107 SUPERFAMILY SSF81273 65 107 7.85E-12 T 11-10-2018 AMD27_01145 d83473d49dc3463de8cc10c887ab3eb3 107 Pfam PF00816 H-NS histone family 11 100 1.1E-20 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AMD27_05100 39f4582a55180168e9bb9a622feddc4f 406 Pfam PF01594 AI-2E family transporter 10 342 1.2E-57 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 ProSitePatterns PS00438 Catalase proximal active site signature. 50 66 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PIRSF PIRSF038928 2 489 5.8E-220 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 111 128 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 90 108 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 27 50 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 130 148 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 327 353 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 PRINTS PR00067 Catalase signature 295 322 5.2E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 Pfam PF06628 Catalase-related immune-responsive 422 483 5.3E-22 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 Gene3D G3DSA:2.40.180.10 10 492 2.6E-223 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 SUPERFAMILY SSF56634 12 491 8.51E-210 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 SMART SM01060 14 398 1.6E-280 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 340 348 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_01940 fe0a098d638dd3c24501a75fc763b8bf 506 Pfam PF00199 Catalase 14 395 1.6E-185 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 PIRSF PIRSF016578 5 90 4.2E-5 T 11-10-2018 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 PIRSF PIRSF016578 141 393 3.3E-18 T 11-10-2018 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 246 381 1.9E-13 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 Gene3D G3DSA:2.40.110.10 129 226 1.4E-27 T 11-10-2018 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 Gene3D G3DSA:1.20.140.10 227 405 2.5E-49 T 11-10-2018 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 Gene3D G3DSA:1.10.540.10 11 128 7.5E-15 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 SUPERFAMILY SSF56645 27 228 2.88E-34 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_14310 1137837c747bf87df9d42c1ca0cd889a 424 SUPERFAMILY SSF47203 239 382 1.99E-8 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_11485 6763aab74e141f89d2aed3439533b02f 125 Gene3D G3DSA:1.10.260.40 5 88 4.3E-9 T 11-10-2018 AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 SUPERFAMILY SSF46785 2 103 2.23E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 SUPERFAMILY SSF53850 85 275 5.58E-17 T 11-10-2018 AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 Gene3D G3DSA:3.40.190.290 91 279 1.0E-13 T 11-10-2018 AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 Pfam PF03466 LysR substrate binding domain 85 273 1.2E-17 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 Gene3D G3DSA:1.10.10.10 3 90 8.6E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11030 fd2b40810ce06e47fdfc02a01591ae2f 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 60 1.2E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 PIRSF PIRSF004553 4 183 3.6E-44 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 SUPERFAMILY SSF53335 5 178 1.11E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 Pfam PF03602 Conserved hypothetical protein 95 5 179 2.9E-50 T 11-10-2018 AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 118 124 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 Gene3D G3DSA:3.40.50.150 1 184 5.2E-52 T 11-10-2018 AMD27_04700 e9b086376cdba1fab565a9c2d6d83ea3 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 181 6.0E-47 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMD27_05685 47fc5d85dde23e4fbff356a13ae2328f 133 SUPERFAMILY SSF54427 2 128 9.83E-24 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_05685 47fc5d85dde23e4fbff356a13ae2328f 133 Pfam PF12680 SnoaL-like domain 12 115 2.7E-8 T 11-10-2018 IPR037401 SnoaL-like domain AMD27_05685 47fc5d85dde23e4fbff356a13ae2328f 133 Gene3D G3DSA:3.10.450.50 3 130 1.7E-24 T 11-10-2018 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 237 35.585 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 Gene3D G3DSA:3.40.1180.10 1 237 1.2E-85 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 236 3.2E-71 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 SUPERFAMILY SSF64005 7 231 4.71E-78 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 236 5.9E-80 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMD27_08895 6d9d917e939a168f2bd9d50c6d4fdbf9 250 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 182 199 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Gene3D G3DSA:1.10.287.470 110 175 5.4E-8 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 SUPERFAMILY SSF111369 46 122 1.24E-10 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Pfam PF13437 HlyD family secretion protein 200 281 3.9E-10 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Gene3D G3DSA:2.40.50.100 48 81 7.7E-13 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Gene3D G3DSA:1.10.287.470 82 109 7.7E-13 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Pfam PF13533 Biotin-lipoyl like 48 96 5.0E-14 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 SUPERFAMILY SSF111369 112 250 4.18E-8 T 11-10-2018 AMD27_01405 a15a0fdd23b1b063650268bf4ec6b833 333 Gene3D G3DSA:2.40.30.170 214 333 8.2E-25 T 11-10-2018 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 222 237 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 360 376 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 244 272 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 297 317 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 380 394 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PRINTS PR00143 Citrate synthase signature 167 180 3.6E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 422 5.8E-237 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 Gene3D G3DSA:1.10.580.10 59 411 6.4E-144 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 PIRSF PIRSF001369 40 425 2.3E-168 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 Gene3D G3DSA:2.20.28.60 2 52 1.2E-23 T 11-10-2018 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 SUPERFAMILY SSF48256 6 422 4.06E-164 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 Gene3D G3DSA:1.10.230.10 271 377 6.4E-144 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMD27_04635 ac35a0f3277a88f34469a88764f35a3d 425 Pfam PF00285 Citrate synthase, C-terminal domain 48 411 8.8E-133 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05485 bb72288926ae6eb2da6a06261a2459c2 294 Gene3D G3DSA:3.60.15.10 33 293 1.7E-69 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_05485 bb72288926ae6eb2da6a06261a2459c2 294 SUPERFAMILY SSF56281 32 293 2.1E-18 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_05485 bb72288926ae6eb2da6a06261a2459c2 294 Pfam PF12706 Beta-lactamase superfamily domain 54 257 1.6E-9 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_01875 1a95e6410a26e6b601ad06b371e9bb00 267 Gene3D G3DSA:2.60.40.2250 9 250 1.2E-91 T 11-10-2018 AMD27_01875 1a95e6410a26e6b601ad06b371e9bb00 267 SUPERFAMILY SSF54001 99 248 8.73E-34 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMD27_01875 1a95e6410a26e6b601ad06b371e9bb00 267 Gene3D G3DSA:3.10.620.30 81 242 1.2E-91 T 11-10-2018 AMD27_01875 1a95e6410a26e6b601ad06b371e9bb00 267 SMART SM00460 161 222 6.4E-16 T 11-10-2018 IPR002931 Transglutaminase-like AMD27_01875 1a95e6410a26e6b601ad06b371e9bb00 267 Pfam PF01841 Transglutaminase-like superfamily 128 220 2.0E-23 T 11-10-2018 IPR002931 Transglutaminase-like AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 Gene3D G3DSA:3.40.50.1100 17 350 2.0E-114 T 11-10-2018 AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 TIGRFAM TIGR00260 thrC: threonine synthase 11 350 1.9E-91 T 11-10-2018 IPR004450 Threonine synthase-like AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 Gene3D G3DSA:3.40.50.1100 65 161 2.0E-114 T 11-10-2018 AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 SUPERFAMILY SSF53686 11 376 2.23E-102 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 57 70 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 343 5.4E-64 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMD27_01010 fa6af469a812f69a0fb3842db2ca1019 379 PIRSF PIRSF038945 1 376 8.0E-151 T 11-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 SUPERFAMILY SSF89919 1 119 7.85E-31 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 104 6.0E-47 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 117 23.988 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 4.2E-24 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 Gene3D G3DSA:3.30.300.20 2 111 7.1E-35 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_01515 0976cb55b431d7633a8a355dad3cf713 134 Pfam PF02033 Ribosome-binding factor A 6 114 1.2E-29 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMD27_09980 d77db734c56c70ff218fbfd10dd6d887 517 Gene3D G3DSA:3.40.1090.20 154 232 2.2E-6 T 11-10-2018 AMD27_09980 d77db734c56c70ff218fbfd10dd6d887 517 Gene3D G3DSA:3.40.1090.10 236 387 7.3E-15 T 11-10-2018 AMD27_09980 d77db734c56c70ff218fbfd10dd6d887 517 Pfam PF01734 Patatin-like phospholipase 158 340 8.3E-24 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMD27_09980 d77db734c56c70ff218fbfd10dd6d887 517 Pfam PF11815 Domain of unknown function (DUF3336) 16 149 3.9E-37 T 11-10-2018 IPR021771 Triacylglycerol lipase GO:0004806|GO:0006629 AMD27_09980 d77db734c56c70ff218fbfd10dd6d887 517 SUPERFAMILY SSF52151 156 488 1.33E-45 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMD27_09985 fdf89ee240942e04ae24a00bf65e1e60 292 SUPERFAMILY SSF52540 48 191 6.51E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09985 fdf89ee240942e04ae24a00bf65e1e60 292 Pfam PF05673 Protein of unknown function (DUF815) 36 284 3.3E-101 T 11-10-2018 IPR008533 Domain of unknown function DUF815 AMD27_09985 fdf89ee240942e04ae24a00bf65e1e60 292 Gene3D G3DSA:3.40.50.300 52 191 3.5E-10 T 11-10-2018 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.0E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 4.1E-139 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 Gene3D G3DSA:2.70.210.12 1 158 1.0E-56 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 SUPERFAMILY SSF82051 3 158 1.11E-53 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 9.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 9.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 9.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 9.6E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.412 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 Gene3D G3DSA:3.40.50.300 159 340 5.6E-49 T 11-10-2018 AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 Pfam PF01018 GTP1/OBG 4 158 3.7E-55 T 11-10-2018 IPR006169 GTP1/OBG domain AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 PIRSF PIRSF002401 1 380 3.6E-133 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type AMD27_06570 ca961df343fb1871a3be5937f1273f44 404 SUPERFAMILY SSF52540 151 336 5.07E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 Gene3D G3DSA:3.90.1170.20 10 278 8.7E-111 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 PIRSF PIRSF006250 7 282 1.1E-98 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 SUPERFAMILY SSF51690 114 279 2.12E-61 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 16 279 9.3E-99 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 Gene3D G3DSA:3.20.20.70 123 269 8.7E-111 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 278 1.2E-60 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 25 112 3.6E-24 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMD27_00325 e61827fa42bc4b89504c291afeba50af 282 SUPERFAMILY SSF54675 7 112 1.09E-29 T 11-10-2018 AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 SUPERFAMILY SSF48008 78 213 1.39E-6 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 Pfam PF07729 FCD domain 82 202 3.3E-10 T 11-10-2018 IPR011711 GntR, C-terminal AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 SMART SM00345 13 71 1.2E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 SUPERFAMILY SSF46785 8 75 2.12E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 Gene3D G3DSA:1.20.120.530 75 221 1.1E-10 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 Gene3D G3DSA:1.10.10.10 5 73 1.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_12595 527066c6451cd093d1555fbfb679c5ba 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.6E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_02080 544be09cfd0003556eb2e27a5b74512f 291 Pfam PF01774 UreD urease accessory protein 59 263 8.1E-46 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMD27_02080 544be09cfd0003556eb2e27a5b74512f 291 Hamap MF_01384 Urease accessory protein UreD [ureD]. 16 275 26.938 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMD27_03905 9cc61565530c84d1d4ccd35c4a7af523 268 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 236 258 2.0E-7 T 11-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 SMART SM00382 28 215 3.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 PIRSF PIRSF039085 1 242 2.0E-98 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 SUPERFAMILY SSF52540 3 238 7.26E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 Pfam PF00005 ABC transporter 19 167 3.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_10910 ededa337e1d8c076439c9c401b1122f3 243 Gene3D G3DSA:3.40.50.300 3 242 3.0E-74 T 11-10-2018 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 SUPERFAMILY SSF53137 15 128 5.89E-47 T 11-10-2018 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 Gene3D G3DSA:3.30.420.80 1 128 5.6E-54 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 3.1E-54 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 Pfam PF00411 Ribosomal protein S11 18 127 3.5E-50 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 ProSitePatterns PS00054 Ribosomal protein S11 signature. 96 118 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.395 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMD27_13965 573b8f088b6ec57a2b4f16fedc0d13b2 128 PIRSF PIRSF002131 1 128 1.6E-51 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 Pfam PF00293 NUDIX domain 8 128 7.6E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 PRINTS PR00502 NUDIX hydrolase family signature 36 50 2.0E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 PRINTS PR00502 NUDIX hydrolase family signature 50 65 2.0E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 SUPERFAMILY SSF55811 1 130 1.22E-25 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_08420 84aaa9ebba504d6d36643338e88acd81 135 Gene3D G3DSA:3.90.79.10 1 134 1.5E-32 T 11-10-2018 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 235 2.1E-45 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 609 49.995 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 606 1.8E-219 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Gene3D G3DSA:3.40.710.10 245 617 2.2E-99 T 11-10-2018 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 SUPERFAMILY SSF56519 56 249 4.32E-54 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Gene3D G3DSA:3.90.1310.10 64 244 5.7E-48 T 11-10-2018 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 602 4.1E-73 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 SUPERFAMILY SSF56601 250 607 4.91E-96 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_04705 ee04ec220c267b49177409c3e3bbf7e0 704 Gene3D G3DSA:3.30.1390.30 85 160 5.7E-48 T 11-10-2018 AMD27_13840 5185f2190acc3000a6a76bb40063bb41 198 SUPERFAMILY SSF52218 4 195 3.67E-57 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_13840 5185f2190acc3000a6a76bb40063bb41 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 195 1.1E-41 T 11-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AMD27_13840 5185f2190acc3000a6a76bb40063bb41 198 ProSitePatterns PS00201 Flavodoxin signature. 7 23 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMD27_13840 5185f2190acc3000a6a76bb40063bb41 198 Gene3D G3DSA:3.40.50.360 1 196 3.1E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_13840 5185f2190acc3000a6a76bb40063bb41 198 Pfam PF03358 NADPH-dependent FMN reductase 13 126 1.4E-9 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 Pfam PF01168 Alanine racemase, N-terminal domain 13 224 1.8E-26 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 PIRSF PIRSF004848 1 228 3.0E-72 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 Gene3D G3DSA:3.20.20.10 1 228 2.0E-79 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 224 4.6E-74 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 SUPERFAMILY SSF51419 3 222 2.75E-71 T 11-10-2018 IPR029066 PLP-binding barrel AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMD27_03670 a857da6e8affc9202ebdd204cf9514a1 228 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 223 30.427 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 6.0E-29 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 Pfam PF00886 Ribosomal protein S16 8 68 8.1E-25 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.377 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 Gene3D G3DSA:3.30.1320.10 1 82 2.7E-31 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_01665 cfeb022d757092216f847d2129dfc356 85 SUPERFAMILY SSF54565 1 75 4.05E-28 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 Pfam PF00106 short chain dehydrogenase 6 196 3.2E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.1E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 8.9E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 8.9E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 SUPERFAMILY SSF51735 1 241 2.13E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_06075 53cb8142575f9e233eb489277cb4cdce 275 Gene3D G3DSA:3.40.50.720 1 275 8.2E-72 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 6 99 9.8E-18 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 100 183 8.1E-9 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 189 277 2.16E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PIRSF PIRSF002111 1 534 7.3E-212 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 2 112 3.06E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 449 520 7.9E-14 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 275 347 2.6E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 189 260 1.5E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 102 171 4.7E-14 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 18 86 1.6E-9 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Pfam PF00575 S1 RNA binding domain 361 434 8.0E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 429 532 6.56E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 103 184 1.19E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 449 520 1.1E-18 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 103 171 3.3E-11 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 275 347 1.9E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 362 434 7.9E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 19 87 1.9E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SMART SM00316 190 260 4.1E-30 T 11-10-2018 IPR022967 RNA-binding domain, S1 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 358 444 3.8E-25 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 269 357 1.7E-28 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 445 528 1.3E-19 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 255 361 5.07E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.4E-87 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 SUPERFAMILY SSF50249 342 440 8.95E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 Gene3D G3DSA:2.40.50.140 187 268 1.7E-29 T 11-10-2018 AMD27_09575 587ccb30053affb55f9cde0db3d75ac8 558 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.9E-210 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMD27_02935 b1887180bf7f05d8e0bb9a48c4323b9d 537 SUPERFAMILY SSF52096 41 269 4.67E-54 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02935 b1887180bf7f05d8e0bb9a48c4323b9d 537 Pfam PF01039 Carboxyl transferase domain 49 524 4.2E-116 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMD27_02935 b1887180bf7f05d8e0bb9a48c4323b9d 537 Gene3D G3DSA:3.90.226.10 7 270 2.6E-66 T 11-10-2018 AMD27_02935 b1887180bf7f05d8e0bb9a48c4323b9d 537 Gene3D G3DSA:3.90.226.10 274 537 1.3E-87 T 11-10-2018 AMD27_02935 b1887180bf7f05d8e0bb9a48c4323b9d 537 SUPERFAMILY SSF52096 236 516 1.21E-72 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_07955 61aa3af6ddc11aee8faedb14899ea400 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 9.9E-23 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_07955 61aa3af6ddc11aee8faedb14899ea400 157 Gene3D G3DSA:3.40.50.2300 1 136 1.8E-37 T 11-10-2018 AMD27_07955 61aa3af6ddc11aee8faedb14899ea400 157 SUPERFAMILY SSF52788 1 135 1.7E-36 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMD27_07955 61aa3af6ddc11aee8faedb14899ea400 157 SMART SM00226 1 136 8.9E-35 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMD27_03415 192c4dc396466fa7c5f12d86ff7a266c 481 SUPERFAMILY SSF52129 283 419 3.66E-7 T 11-10-2018 IPR029030 Caspase-like domain superfamily AMD27_03415 192c4dc396466fa7c5f12d86ff7a266c 481 Gene3D G3DSA:3.40.50.1460 284 431 1.2E-9 T 11-10-2018 AMD27_03415 192c4dc396466fa7c5f12d86ff7a266c 481 Pfam PF01650 Peptidase C13 family 229 436 9.3E-39 T 11-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 AMD27_07535 22ea9115bd2da25ca1c8cea1c18c2162 537 PIRSF PIRSF006446 2 333 6.0E-116 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMD27_07535 22ea9115bd2da25ca1c8cea1c18c2162 537 PIRSF PIRSF006446 342 526 4.5E-31 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMD27_07535 22ea9115bd2da25ca1c8cea1c18c2162 537 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 1.2E-173 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMD27_06620 eb0647b7fb03f0bff067ea09f25f4b53 292 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 277 4.9E-84 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMD27_06620 eb0647b7fb03f0bff067ea09f25f4b53 292 Gene3D G3DSA:1.10.357.140 13 166 1.1E-22 T 11-10-2018 AMD27_06620 eb0647b7fb03f0bff067ea09f25f4b53 292 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site AMD27_06620 eb0647b7fb03f0bff067ea09f25f4b53 292 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 17.415 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMD27_06620 eb0647b7fb03f0bff067ea09f25f4b53 292 Pfam PF01040 UbiA prenyltransferase family 19 267 1.1E-58 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMD27_05670 18d7509f054739defd8eb7a0ab4acf9a 307 Gene3D G3DSA:3.20.20.70 1 297 2.8E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05670 18d7509f054739defd8eb7a0ab4acf9a 307 Pfam PF00682 HMGL-like 6 276 1.4E-49 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMD27_05670 18d7509f054739defd8eb7a0ab4acf9a 307 SUPERFAMILY SSF51569 3 288 1.9E-65 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 SUPERFAMILY SSF52540 623 912 2.83E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 927 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:1.20.1580.10 92 493 2.9E-247 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 942 22.313 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:3.40.50.300 619 938 1.3E-139 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 SUPERFAMILY SSF52540 6 570 1.13E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:1.20.1580.10 694 832 1.3E-139 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:3.30.190.20 132 241 2.9E-247 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:3.40.50.300 8 596 2.9E-247 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 ProSitePatterns PS00211 ABC transporters family signature. 832 846 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Gene3D G3DSA:1.10.8.280 288 404 2.9E-247 T 11-10-2018 AMD27_14970 25a0b3151bfb72e92d511de58c62f16f 943 Pfam PF00005 ABC transporter 625 862 1.0E-10 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14015 6618c6d01594fe75839aa6ff5af3b983 101 Gene3D G3DSA:4.10.830.10 41 101 2.5E-21 T 11-10-2018 AMD27_14015 6618c6d01594fe75839aa6ff5af3b983 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 9.3E-25 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14015 6618c6d01594fe75839aa6ff5af3b983 101 SUPERFAMILY SSF57716 2 101 7.06E-38 T 11-10-2018 AMD27_14015 6618c6d01594fe75839aa6ff5af3b983 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.275 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 8.5E-52 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 Pfam PF00677 Lumazine binding domain 103 188 5.8E-19 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 Pfam PF00677 Lumazine binding domain 3 88 3.6E-16 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 SUPERFAMILY SSF63380 1 92 2.64E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 Gene3D G3DSA:2.40.30.20 104 205 2.0E-24 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 SUPERFAMILY SSF63380 96 202 2.21E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 PIRSF PIRSF000498 1 205 4.9E-53 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15080 cec72292b6cbcc6070b765025c4c3e0c 205 Gene3D G3DSA:2.40.30.20 1 91 2.6E-24 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 7 369 1.1E-168 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 SUPERFAMILY SSF51713 1 365 2.62E-159 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 Gene3D G3DSA:3.20.20.105 1 368 7.9E-169 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 365 56.218 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 4 368 2.5E-160 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_13315 8e8d18edef1831851e65bbddfac7bcda 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 127 362 2.5E-91 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMD27_00710 19f7752b0ec309aff7922d72267282ec 439 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 87 295 6.2E-72 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMD27_00710 19f7752b0ec309aff7922d72267282ec 439 SUPERFAMILY SSF102405 90 295 2.14E-42 T 11-10-2018 AMD27_00710 19f7752b0ec309aff7922d72267282ec 439 Gene3D G3DSA:3.40.50.450 4 297 2.4E-87 T 11-10-2018 AMD27_00710 19f7752b0ec309aff7922d72267282ec 439 Pfam PF02481 DNA recombination-mediator protein A 88 286 3.5E-72 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 40.826 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PIRSF PIRSF001529 1 423 3.3E-182 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 399 8.5E-40 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 1.7E-171 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 Gene3D G3DSA:3.30.930.10 105 423 4.3E-118 T 11-10-2018 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 SUPERFAMILY SSF55681 116 419 1.01E-102 T 11-10-2018 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 Gene3D G3DSA:1.10.287.40 1 104 3.1E-22 T 11-10-2018 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.2E-30 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.2E-30 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.2E-30 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.2E-30 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.2E-30 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 SUPERFAMILY SSF46589 1 112 1.73E-29 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMD27_04330 d11a1eb492ddb0f11b9e7bc63cac4196 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 6.5E-29 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 PIRSF PIRSF004555 1 109 2.5E-31 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 105 1.8E-23 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 96 20.786 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 Pfam PF02575 YbaB/EbfC DNA-binding family 7 99 2.4E-29 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 Gene3D G3DSA:3.30.1310.10 1 109 6.2E-34 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMD27_07425 749ea4454f1d9ddda456c0c77d7120b1 109 SUPERFAMILY SSF82607 7 103 4.97E-28 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMD27_14385 64065db985cc1e884a72c300094aa238 203 Pfam PF06938 Protein of unknown function (DUF1285) 57 195 1.1E-46 T 11-10-2018 IPR010707 Protein of unknown function DUF1285 AMD27_14385 64065db985cc1e884a72c300094aa238 203 PIRSF PIRSF029557 8 199 5.9E-42 T 11-10-2018 IPR010707 Protein of unknown function DUF1285 AMD27_14385 64065db985cc1e884a72c300094aa238 203 Gene3D G3DSA:3.10.540.10 14 106 9.2E-33 T 11-10-2018 AMD27_14385 64065db985cc1e884a72c300094aa238 203 Gene3D G3DSA:2.30.270.10 107 174 1.2E-12 T 11-10-2018 IPR023361 DUF1285, beta-roll domain superfamily AMD27_17285 58f1110b5681de8d5d56912c02e37611 221 Pfam PF01435 Peptidase family M48 70 142 1.3E-6 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_05480 04941015bc86e83d987151bd3b88c7c3 182 SUPERFAMILY SSF52499 2 180 4.84E-49 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_05480 04941015bc86e83d987151bd3b88c7c3 182 Pfam PF00857 Isochorismatase family 4 177 1.4E-37 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMD27_05480 04941015bc86e83d987151bd3b88c7c3 182 Gene3D G3DSA:3.40.50.850 1 182 1.1E-50 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_17745 1880d7a55a243f7eb5f720a7f4f33b10 283 SUPERFAMILY SSF52540 1 191 2.46E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_17745 1880d7a55a243f7eb5f720a7f4f33b10 283 Gene3D G3DSA:3.40.50.300 9 240 2.7E-18 T 11-10-2018 AMD27_17745 1880d7a55a243f7eb5f720a7f4f33b10 283 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 135 1.2E-6 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMD27_00635 defb890bcc6aa43abb8146c1689faf23 156 Gene3D G3DSA:1.20.5.620 62 122 6.6E-13 T 11-10-2018 AMD27_00635 defb890bcc6aa43abb8146c1689faf23 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.98 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMD27_00635 defb890bcc6aa43abb8146c1689faf23 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 6.0E-34 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMD27_00635 defb890bcc6aa43abb8146c1689faf23 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 2.1E-45 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 AMD27_00635 defb890bcc6aa43abb8146c1689faf23 156 SUPERFAMILY SSF81573 62 121 1.01E-11 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily AMD27_06845 cb0ee3d4314c1e39bff1ada373c0314a 311 SUPERFAMILY SSF46785 15 83 3.96E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_06845 cb0ee3d4314c1e39bff1ada373c0314a 311 Pfam PF13730 Helix-turn-helix domain 16 67 7.4E-11 T 11-10-2018 AMD27_06845 cb0ee3d4314c1e39bff1ada373c0314a 311 Gene3D G3DSA:1.10.10.10 14 100 3.7E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 Gene3D G3DSA:3.40.50.1970 1 171 2.6E-66 T 11-10-2018 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 SUPERFAMILY SSF56796 3 354 1.01E-110 T 11-10-2018 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 Pfam PF01761 3-dehydroquinate synthase 66 323 5.5E-105 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 Gene3D G3DSA:1.20.1090.10 172 359 8.8E-69 T 11-10-2018 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 67.714 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 PIRSF PIRSF001455 5 359 9.8E-102 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMD27_14610 9ec3cc0ddbeae8c36ea37493e0d352a8 359 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 352 6.5E-112 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMD27_07900 037a23af8c9ed15197c1909b1780f812 455 PIRSF PIRSF006060 2 454 2.0E-70 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_07900 037a23af8c9ed15197c1909b1780f812 455 Pfam PF00324 Amino acid permease 16 442 2.0E-102 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_07900 037a23af8c9ed15197c1909b1780f812 455 Gene3D G3DSA:1.20.1740.10 10 455 1.0E-61 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 SUPERFAMILY SSF51905 4 392 1.43E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 Pfam PF01494 FAD binding domain 4 357 2.9E-40 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 Gene3D G3DSA:3.30.9.50 84 278 6.3E-98 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 4 399 5.6E-119 T 11-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 5.3E-19 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 5.3E-19 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 5.3E-19 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 5.3E-19 T 11-10-2018 AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 Gene3D G3DSA:3.50.50.60 5 347 6.3E-98 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04875 209ea7b5ee89f69bec71a4965d913841 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 4 399 4.2E-113 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMD27_15525 c9590420eecf49a4aadf6faf628e1585 384 Pfam PF00155 Aminotransferase class I and II 29 377 6.9E-62 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_15525 c9590420eecf49a4aadf6faf628e1585 384 SUPERFAMILY SSF53383 6 383 1.2E-97 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_15525 c9590420eecf49a4aadf6faf628e1585 384 Gene3D G3DSA:3.90.1150.10 17 380 1.1E-127 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_15525 c9590420eecf49a4aadf6faf628e1585 384 Gene3D G3DSA:3.40.640.10 41 280 1.1E-127 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_10065 6c644e0f96020d748111c61bf3d6bb7c 194 Pfam PF02674 Colicin V production protein 4 140 6.2E-27 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMD27_15960 11e5703d82342e037b324e4cffb39f17 167 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 16 148 4.1E-26 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp AMD27_15960 11e5703d82342e037b324e4cffb39f17 167 SUPERFAMILY SSF141452 1 162 3.4E-45 T 11-10-2018 IPR036624 Hcp1-like superfamily AMD27_15960 11e5703d82342e037b324e4cffb39f17 167 Pfam PF05638 Type VI secretion system effector, Hcp 5 139 1.0E-39 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp AMD27_15960 11e5703d82342e037b324e4cffb39f17 167 Gene3D G3DSA:2.30.110.20 1 167 1.2E-70 T 11-10-2018 IPR036624 Hcp1-like superfamily AMD27_07450 8dc6fc2c317d8507bf22643d14c39ae8 283 SMART SM00382 30 188 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_07450 8dc6fc2c317d8507bf22643d14c39ae8 283 SUPERFAMILY SSF52540 16 256 6.37E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07450 8dc6fc2c317d8507bf22643d14c39ae8 283 Gene3D G3DSA:3.40.50.300 6 213 2.0E-27 T 11-10-2018 AMD27_07450 8dc6fc2c317d8507bf22643d14c39ae8 283 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 34 181 2.4E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMD27_09190 5beda7e74e23039938c68f53271222b0 306 Pfam PF12697 Alpha/beta hydrolase family 23 289 3.8E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_09190 5beda7e74e23039938c68f53271222b0 306 Gene3D G3DSA:3.40.50.1820 4 301 7.5E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09190 5beda7e74e23039938c68f53271222b0 306 SUPERFAMILY SSF53474 7 299 2.08E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07385 6e7517e559d3bafce08936a5bead4266 148 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 4 146 1.3E-52 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMD27_07385 6e7517e559d3bafce08936a5bead4266 148 SUPERFAMILY SSF55826 6 145 9.16E-42 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMD27_07385 6e7517e559d3bafce08936a5bead4266 148 PIRSF PIRSF006181 1 148 4.1E-51 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMD27_07385 6e7517e559d3bafce08936a5bead4266 148 Gene3D G3DSA:3.90.960.10 2 148 9.4E-53 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMD27_07385 6e7517e559d3bafce08936a5bead4266 148 Pfam PF04073 Aminoacyl-tRNA editing domain 25 135 3.6E-27 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMD27_00705 cf1980084d9a19284aeb91c88790f695 189 SUPERFAMILY SSF55821 6 188 2.17E-42 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMD27_00705 cf1980084d9a19284aeb91c88790f695 189 Gene3D G3DSA:3.90.870.10 1 188 4.3E-52 T 11-10-2018 AMD27_00705 cf1980084d9a19284aeb91c88790f695 189 Pfam PF01300 Telomere recombination 12 188 7.4E-33 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMD27_00705 cf1980084d9a19284aeb91c88790f695 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 188 35.269 T 11-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 PRINTS PR01438 Universal stress protein signature 258 280 7.2E-8 T 11-10-2018 IPR006015 Universal stress protein A AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 PRINTS PR01438 Universal stress protein signature 240 252 7.2E-8 T 11-10-2018 IPR006015 Universal stress protein A AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 PRINTS PR01438 Universal stress protein signature 1 11 7.2E-8 T 11-10-2018 IPR006015 Universal stress protein A AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 Pfam PF00582 Universal stress protein family 2 157 2.1E-5 T 11-10-2018 IPR006016 UspA AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 Pfam PF00582 Universal stress protein family 215 280 2.0E-12 T 11-10-2018 IPR006016 UspA AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 SUPERFAMILY SSF52402 1 157 9.21E-11 T 11-10-2018 AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 Gene3D G3DSA:3.40.50.12370 2 280 2.6E-46 T 11-10-2018 AMD27_06155 4d5abbb861aab111bfe107f0dac7f0b1 280 SUPERFAMILY SSF52402 165 280 4.69E-19 T 11-10-2018 AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 Gene3D G3DSA:3.40.50.720 3 253 7.3E-69 T 11-10-2018 AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 SUPERFAMILY SSF51735 9 252 2.68E-70 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 5.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 5.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.6E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_03955 a9c4d840bb60ad4f52d8c352e95eb80d 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 2.8E-56 T 11-10-2018 AMD27_13390 c944f3c3f56e405d7f8ba4d6670383c9 516 Gene3D G3DSA:1.20.200.10 199 500 1.7E-92 T 11-10-2018 AMD27_13390 c944f3c3f56e405d7f8ba4d6670383c9 516 SUPERFAMILY SSF48557 2 502 4.32E-162 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMD27_13390 c944f3c3f56e405d7f8ba4d6670383c9 516 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 11-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 AMD27_13390 c944f3c3f56e405d7f8ba4d6670383c9 516 Gene3D G3DSA:1.10.275.10 1 198 2.6E-56 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal AMD27_13390 c944f3c3f56e405d7f8ba4d6670383c9 516 Pfam PF00221 Aromatic amino acid lyase 9 468 3.3E-151 T 11-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 SUPERFAMILY SSF53681 127 244 4.36E-31 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 200 210 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 Gene3D G3DSA:3.40.50.1860 114 227 7.7E-78 T 11-10-2018 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 SUPERFAMILY SSF53681 22 125 9.48E-34 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 Hamap MF_00258 Glutamate racemase [murI]. 21 279 34.223 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 Gene3D G3DSA:3.40.50.1860 22 262 7.7E-78 T 11-10-2018 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 87 95 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 Pfam PF01177 Asp/Glu/Hydantoin racemase 23 235 9.4E-28 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_14380 a5dec8874b74c64ebea17766ed1f9f07 292 TIGRFAM TIGR00067 glut_race: glutamate racemase 23 265 1.7E-65 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_03540 a5be2fbffcdb446a945aa1160ea758a0 293 PIRSF PIRSF007580 2 293 4.2E-72 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_03540 a5be2fbffcdb446a945aa1160ea758a0 293 Pfam PF10118 Predicted metal-dependent hydrolase 17 279 4.2E-77 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 SUPERFAMILY SSF52540 4 198 2.1E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 179 7.9E-37 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 5 203 47.431 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 7 203 2.9E-103 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 Gene3D G3DSA:3.40.50.300 7 203 1.9E-50 T 11-10-2018 AMD27_02135 9058ff83eef4dfbc9457def3fd2fceaf 204 PIRSF PIRSF005624 1 203 3.2E-47 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 263 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 Gene3D G3DSA:3.90.1150.10 25 391 5.6E-124 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 401 67.328 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 Gene3D G3DSA:3.40.640.10 60 308 5.6E-124 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 PIRSF PIRSF000521 22 127 7.7E-10 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 PIRSF PIRSF000521 173 401 7.2E-33 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 PIRSF PIRSF000521 122 162 0.062 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 SUPERFAMILY SSF53383 14 399 5.84E-111 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 398 2.7E-126 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMD27_10475 3475fddc3729cdbc2b834c74650354ae 403 Pfam PF00202 Aminotransferase class-III 25 397 3.1E-100 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMD27_13330 cf4505daccc081541f065002d37d06c2 328 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 50 293 9.4E-74 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMD27_13330 cf4505daccc081541f065002d37d06c2 328 PRINTS PR01755 Bacterial translocase SecF protein signature 49 64 1.1E-26 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_13330 cf4505daccc081541f065002d37d06c2 328 PRINTS PR01755 Bacterial translocase SecF protein signature 162 176 1.1E-26 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_13330 cf4505daccc081541f065002d37d06c2 328 PRINTS PR01755 Bacterial translocase SecF protein signature 242 257 1.1E-26 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_13330 cf4505daccc081541f065002d37d06c2 328 PRINTS PR01755 Bacterial translocase SecF protein signature 210 228 1.1E-26 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_13330 cf4505daccc081541f065002d37d06c2 328 Pfam PF07549 SecD/SecF GG Motif 44 71 1.1E-9 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMD27_13330 cf4505daccc081541f065002d37d06c2 328 Pfam PF02355 Protein export membrane protein 125 300 3.4E-60 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMD27_13330 cf4505daccc081541f065002d37d06c2 328 Gene3D G3DSA:1.20.1640.10 108 305 9.0E-12 T 11-10-2018 AMD27_13330 cf4505daccc081541f065002d37d06c2 328 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 22 304 26.246 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMD27_13330 cf4505daccc081541f065002d37d06c2 328 SUPERFAMILY SSF82866 115 301 3.27E-37 T 11-10-2018 AMD27_13330 cf4505daccc081541f065002d37d06c2 328 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 71 291 2.3E-47 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 Pfam PF00175 Oxidoreductase NAD-binding domain 116 229 2.7E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 SUPERFAMILY SSF52343 109 251 4.58E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 7.3E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 140 149 7.3E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 53 60 7.3E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 7.3E-8 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 1.5E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 1.5E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 1.5E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 SUPERFAMILY SSF63380 8 101 7.35E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 Pfam PF00970 Oxidoreductase FAD-binding domain 18 99 1.0E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 Gene3D G3DSA:3.40.50.80 99 253 9.3E-41 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_12290 f7d0e49bf391dc8408956996cebd592c 253 Gene3D G3DSA:2.40.30.10 1 97 1.0E-28 T 11-10-2018 AMD27_04320 45e0a758b8a1d0159e202e00c6552753 232 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 35 232 8.4E-24 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AMD27_04320 45e0a758b8a1d0159e202e00c6552753 232 Gene3D G3DSA:2.50.20.10 35 232 6.0E-51 T 11-10-2018 AMD27_04320 45e0a758b8a1d0159e202e00c6552753 232 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 49 222 2.7E-38 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMD27_04320 45e0a758b8a1d0159e202e00c6552753 232 SUPERFAMILY SSF89392 39 232 3.02E-45 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMD27_04320 45e0a758b8a1d0159e202e00c6552753 232 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 22 232 28.465 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 145 2.2E-26 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 SUPERFAMILY SSF52080 6 145 3.14E-41 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 146 17.829 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 145 5.9E-44 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 Gene3D G3DSA:3.100.10.10 73 146 2.1E-11 T 11-10-2018 AMD27_13985 025dc121c92dcae0870b9bd5f5aa73b1 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 141 - T 11-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14675 824d317b9e4050dbf4370ab66d441035 111 Pfam PF04999 Cell division protein FtsL 21 102 1.4E-22 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMD27_14675 824d317b9e4050dbf4370ab66d441035 111 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 20 101 1.6E-12 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMD27_14675 824d317b9e4050dbf4370ab66d441035 111 Hamap MF_00910 Cell division protein FtsL [ftsL]. 18 101 12.755 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 SUPERFAMILY SSF52518 468 695 2.83E-95 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 Gene3D G3DSA:3.40.50.970 468 701 6.2E-107 T 11-10-2018 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 Gene3D G3DSA:3.40.50.970 53 467 2.8E-131 T 11-10-2018 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 880 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 PIRSF PIRSF000156 1 883 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 134 291 1.1E-7 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 Gene3D G3DSA:3.40.50.920 702 883 7.1E-64 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 SUPERFAMILY SSF52518 54 464 1.38E-136 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold AMD27_15285 a3ccc522f58a9e3c3235cdc6ecbb6252 900 SUPERFAMILY SSF52922 697 880 1.83E-48 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 353 9.6E-156 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 Gene3D G3DSA:3.40.718.10 2 359 2.1E-142 T 11-10-2018 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 SMART SM01329 4 354 1.8E-191 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 358 51.034 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 354 2.1E-134 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 SUPERFAMILY SSF53659 1 358 4.68E-118 T 11-10-2018 AMD27_02015 4ec6a509df9eb000a676b43abcd6ef48 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMD27_17150 8810bcf7282a73b60b5dc44c68c955d8 167 Gene3D G3DSA:1.10.260.40 9 78 5.8E-6 T 11-10-2018 AMD27_07990 cac109af2e59e36332f4e4e8cf1da41d 123 Gene3D G3DSA:2.30.110.50 16 110 2.4E-12 T 11-10-2018 AMD27_07990 cac109af2e59e36332f4e4e8cf1da41d 123 SUPERFAMILY SSF69279 24 108 4.25E-14 T 11-10-2018 AMD27_07990 cac109af2e59e36332f4e4e8cf1da41d 123 Pfam PF05954 Phage late control gene D protein (GPD) 43 107 9.5E-10 T 11-10-2018 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 PIRSF PIRSF001467 11 184 3.4E-28 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 38 53 1.6E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 1.6E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 1.6E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 SUPERFAMILY SSF50891 21 182 1.37E-57 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 Gene3D G3DSA:2.40.100.10 20 183 5.8E-62 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily AMD27_00100 156e913728a6eb831fca9af1e4c76454 188 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 25 181 3.4E-48 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMD27_06880 4d05986859eb19d8c989b20a90c4f0aa 154 Gene3D G3DSA:3.40.960.10 29 131 4.0E-7 T 11-10-2018 AMD27_08220 4af051109e355521f4eb161e046591a7 509 Gene3D G3DSA:2.60.60.30 22 162 4.3E-28 T 11-10-2018 AMD27_08220 4af051109e355521f4eb161e046591a7 509 Gene3D G3DSA:3.30.40.60 431 509 7.0E-14 T 11-10-2018 AMD27_08220 4af051109e355521f4eb161e046591a7 509 Pfam PF01844 HNH endonuclease 466 508 2.4E-12 T 11-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMD27_08220 4af051109e355521f4eb161e046591a7 509 SMART SM00507 453 503 1.3E-8 T 11-10-2018 IPR003615 HNH nuclease AMD27_08220 4af051109e355521f4eb161e046591a7 509 Pfam PF02342 TerD domain 28 163 1.9E-25 T 11-10-2018 IPR003325 TerD domain AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 Gene3D G3DSA:2.60.300.12 5 111 8.2E-34 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 6 110 6.7E-38 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 SUPERFAMILY SSF89360 5 100 1.2E-29 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 92 109 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 106 3.4E-18 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMD27_00040 b200ca4287f87a33c02599577d63c79a 111 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 111 32.954 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 AMD27_02985 ecf3606b955423587f84a5458daa5a5c 217 SUPERFAMILY SSF52833 7 87 2.16E-13 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_02985 ecf3606b955423587f84a5458daa5a5c 217 Gene3D G3DSA:1.20.1050.10 87 195 1.6E-57 T 11-10-2018 AMD27_02985 ecf3606b955423587f84a5458daa5a5c 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 11 78 9.9E-11 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_02985 ecf3606b955423587f84a5458daa5a5c 217 SUPERFAMILY SSF47616 91 207 2.56E-16 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_02985 ecf3606b955423587f84a5458daa5a5c 217 Gene3D G3DSA:3.40.30.10 11 203 1.6E-57 T 11-10-2018 AMD27_17740 449b98b41c0a1e9113353d86225a6ece 422 SUPERFAMILY SSF110849 56 152 5.58E-7 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMD27_17740 449b98b41c0a1e9113353d86225a6ece 422 Gene3D G3DSA:3.90.1530.30 57 125 1.5E-5 T 11-10-2018 AMD27_17740 449b98b41c0a1e9113353d86225a6ece 422 SMART SM00470 45 150 0.0031 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMD27_17740 449b98b41c0a1e9113353d86225a6ece 422 Pfam PF02195 ParB-like nuclease domain 47 127 1.1E-5 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMD27_13430 a0170035cdc53ec22fe486d39e7c75a9 208 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 19 174 8.8E-39 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 Pfam PF00561 alpha/beta hydrolase fold 32 258 3.6E-26 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 Gene3D G3DSA:3.40.50.1820 3 271 5.8E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.7E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 1.7E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 217 231 1.7E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 57 72 1.7E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_03980 10804bbb79e37c13adf80e5e78be3729 271 SUPERFAMILY SSF53474 7 269 5.96E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03305 8ed26b1f7c92d4adbd4bbbe45175af67 280 Gene3D G3DSA:1.10.3720.10 43 272 2.2E-39 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_03305 8ed26b1f7c92d4adbd4bbbe45175af67 280 SUPERFAMILY SSF161098 51 256 1.15E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_03305 8ed26b1f7c92d4adbd4bbbe45175af67 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 271 2.1E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_03305 8ed26b1f7c92d4adbd4bbbe45175af67 280 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 49 117 1.2E-13 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMD27_15765 9ecb68abf54f724de4aeeb1d4d26c711 400 Pfam PF07995 Glucose / Sorbosone dehydrogenase 68 395 4.8E-121 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMD27_15765 9ecb68abf54f724de4aeeb1d4d26c711 400 SUPERFAMILY SSF50952 57 391 1.02E-41 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMD27_15765 9ecb68abf54f724de4aeeb1d4d26c711 400 Gene3D G3DSA:2.120.10.30 55 400 3.8E-98 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMD27_12765 4bef77a027396a8f7299f2995e2d5629 93 SUPERFAMILY SSF54534 3 87 6.34E-28 T 11-10-2018 AMD27_12765 4bef77a027396a8f7299f2995e2d5629 93 Pfam PF00639 PPIC-type PPIASE domain 14 88 1.8E-19 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMD27_12765 4bef77a027396a8f7299f2995e2d5629 93 Gene3D G3DSA:3.10.50.40 1 91 1.2E-31 T 11-10-2018 AMD27_10875 e27a1e66000208ce02510ae74ca1d535 295 Pfam PF00892 EamA-like transporter family 10 142 4.3E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_10875 e27a1e66000208ce02510ae74ca1d535 295 Pfam PF00892 EamA-like transporter family 155 284 5.4E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_10875 e27a1e66000208ce02510ae74ca1d535 295 SUPERFAMILY SSF103481 42 144 4.58E-13 T 11-10-2018 AMD27_10875 e27a1e66000208ce02510ae74ca1d535 295 SUPERFAMILY SSF103481 190 288 6.41E-16 T 11-10-2018 AMD27_14995 2f2bb4a42d235831feb97f9684b6862d 156 Pfam PF01638 HxlR-like helix-turn-helix 20 105 2.6E-21 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMD27_14995 2f2bb4a42d235831feb97f9684b6862d 156 SUPERFAMILY SSF46785 6 143 2.1E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_14995 2f2bb4a42d235831feb97f9684b6862d 156 Gene3D G3DSA:1.10.10.10 2 151 4.0E-40 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 4.5E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 4.5E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 4.5E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.5E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 4.5E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 SUPERFAMILY SSF51735 1 232 1.32E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 Pfam PF00106 short chain dehydrogenase 2 188 5.9E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 Gene3D G3DSA:3.40.50.720 2 258 1.4E-52 T 11-10-2018 AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 4.3E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 4.3E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 4.3E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_11360 dc4fd6fa5609c30531bf990b8d573d03 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 Gene3D G3DSA:2.40.50.100 1 124 7.9E-48 T 11-10-2018 AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 SUPERFAMILY SSF51230 3 122 1.34E-43 T 11-10-2018 IPR011053 Single hybrid motif AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 Pfam PF01597 Glycine cleavage H-protein 7 122 6.0E-44 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 122 3.9E-47 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMD27_08050 d4e5b9c694c0311140745b311b6ea9cd 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 36.969 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 SUPERFAMILY SSF54373 221 306 1.83E-19 T 11-10-2018 AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 Gene3D G3DSA:3.50.50.60 4 348 3.7E-78 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 Gene3D G3DSA:3.30.9.10 88 307 3.7E-78 T 11-10-2018 AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 3 351 1.8E-79 T 11-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 SUPERFAMILY SSF51905 1 363 5.7E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03730 538d6858b6048e85d90bcdbd626db51e 367 Pfam PF01266 FAD dependent oxidoreductase 2 346 1.1E-59 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 21 34 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 Pfam PF01195 Peptidyl-tRNA hydrolase 10 192 1.4E-53 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 9 192 7.4E-64 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 SUPERFAMILY SSF53178 9 195 1.23E-68 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 115 125 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 Gene3D G3DSA:3.40.50.1470 3 196 2.6E-74 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMD27_04465 b0f9d0f128f1803161c15ebe8f857d25 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 8 185 34.505 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 Gene3D G3DSA:1.25.40.10 6 215 1.9E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 SUPERFAMILY SSF81901 59 207 9.81E-29 T 11-10-2018 AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 SMART SM00671 113 148 8.7E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 SMART SM00671 44 75 4.4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 SMART SM00671 149 184 4.9E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 SMART SM00671 76 112 0.0049 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 Pfam PF08238 Sel1 repeat 77 107 5.7E-4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 Pfam PF08238 Sel1 repeat 149 182 1.1E-7 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_09160 131eafb00bc0058e884f3b9996ee1402 227 Pfam PF08238 Sel1 repeat 113 145 9.7E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_13700 d2d7e8420b52d929696b2bc329ee13a4 141 Gene3D G3DSA:3.90.190.10 28 138 4.0E-25 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_13700 d2d7e8420b52d929696b2bc329ee13a4 141 Pfam PF04273 Putative phosphatase (DUF442) 31 131 6.3E-22 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMD27_01810 b90c1a68321c082dc4d5250c1bf52d3b 258 Gene3D G3DSA:3.40.50.150 12 245 4.0E-36 T 11-10-2018 AMD27_01810 b90c1a68321c082dc4d5250c1bf52d3b 258 Pfam PF08241 Methyltransferase domain 49 137 4.8E-14 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMD27_01810 b90c1a68321c082dc4d5250c1bf52d3b 258 SUPERFAMILY SSF53335 7 186 8.04E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_04910 09829f028b5910a137af58d799b9a1f2 296 Pfam PF07859 alpha/beta hydrolase fold 78 163 1.7E-15 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMD27_04910 09829f028b5910a137af58d799b9a1f2 296 Gene3D G3DSA:3.40.50.1820 35 278 6.3E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04910 09829f028b5910a137af58d799b9a1f2 296 SUPERFAMILY SSF53474 39 271 1.66E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_17625 583b1dcd6962c649d84f155866d54502 396 Pfam PF00589 Phage integrase family 222 375 1.5E-12 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_17625 583b1dcd6962c649d84f155866d54502 396 Gene3D G3DSA:1.10.150.130 81 197 6.0E-18 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_17625 583b1dcd6962c649d84f155866d54502 396 Gene3D G3DSA:1.10.443.10 198 389 1.8E-12 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_17625 583b1dcd6962c649d84f155866d54502 396 Gene3D G3DSA:3.30.160.390 1 80 3.4E-14 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMD27_17625 583b1dcd6962c649d84f155866d54502 396 SUPERFAMILY SSF56349 85 385 1.21E-42 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_11685 a49131c70bfc48a8816ebfcf3b55bcb6 214 Pfam PF07290 Protein of unknown function (DUF1449) 10 213 9.2E-55 T 11-10-2018 IPR010840 Protein of unknown function DUF1449 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Gene3D G3DSA:3.40.50.720 92 254 5.7E-106 T 11-10-2018 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 355 40.142 T 11-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 278 1.3E-18 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 SUPERFAMILY SSF52283 16 112 2.08E-17 T 11-10-2018 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Gene3D G3DSA:3.30.1370.170 291 350 2.2E-10 T 11-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Pfam PF11890 Domain of unknown function (DUF3410) 300 349 7.0E-13 T 11-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 SUPERFAMILY SSF51735 94 254 1.26E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Gene3D G3DSA:3.40.50.720 2 272 5.7E-106 T 11-10-2018 AMD27_10895 f0572ecebf66ee33b768e012371c3db9 355 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 253 3.9E-35 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 2.8E-31 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 Gene3D G3DSA:1.10.1050.10 6 208 9.5E-78 T 11-10-2018 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 Pfam PF01479 S4 domain 99 145 2.3E-17 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 SUPERFAMILY SSF55174 2 208 2.75E-66 T 11-10-2018 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 SMART SM00363 98 162 9.4E-17 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.905 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 SMART SM01390 3 97 4.5E-45 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 3.7E-80 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMD27_13960 9a899e9b77d338110d8f9e249a78e44b 208 Gene3D G3DSA:3.10.290.10 97 193 9.5E-78 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMD27_03405 a930326d2bfa3b318bd80f33a7df72e2 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 1.0E-71 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_03405 a930326d2bfa3b318bd80f33a7df72e2 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 267 17.362 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_03405 a930326d2bfa3b318bd80f33a7df72e2 274 Pfam PF02673 Bacitracin resistance protein BacA 9 262 2.8E-80 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMD27_17525 5d2b63ee6e513d1f3c569bc2f8bdb264 864 Gene3D G3DSA:1.10.8.730 510 618 6.2E-42 T 11-10-2018 AMD27_17525 5d2b63ee6e513d1f3c569bc2f8bdb264 864 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 29 256 3.4E-17 T 11-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase AMD27_17525 5d2b63ee6e513d1f3c569bc2f8bdb264 864 Pfam PF12846 AAA-like domain 452 703 6.9E-13 T 11-10-2018 AMD27_17525 5d2b63ee6e513d1f3c569bc2f8bdb264 864 Gene3D G3DSA:3.40.50.300 445 728 6.2E-42 T 11-10-2018 AMD27_17525 5d2b63ee6e513d1f3c569bc2f8bdb264 864 SUPERFAMILY SSF52540 438 721 2.1E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00035 c8237d6a9067b7401160d7a0d7723e39 334 Gene3D G3DSA:3.40.190.170 54 254 5.1E-13 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMD27_05585 a0b3c591c5b9c304f01236931d13898d 464 Gene3D G3DSA:1.10.3720.10 236 462 1.9E-32 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_05585 a0b3c591c5b9c304f01236931d13898d 464 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 260 460 1.8E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_05585 a0b3c591c5b9c304f01236931d13898d 464 Pfam PF11812 Domain of unknown function (DUF3333) 32 195 2.3E-42 T 11-10-2018 IPR024573 Domain of unknown function DUF3333 AMD27_05585 a0b3c591c5b9c304f01236931d13898d 464 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 221 461 1.4E-64 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMD27_05585 a0b3c591c5b9c304f01236931d13898d 464 SUPERFAMILY SSF161098 238 449 9.03E-35 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 Pfam PF05683 Fumarase C-terminus 289 487 3.7E-77 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 486 1.0E-48 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 Pfam PF05681 Fumarate hydratase (Fumerase) 12 285 5.2E-102 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 PIRSF PIRSF001394 1 505 4.6E-210 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 13 285 1.6E-67 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 Gene3D G3DSA:3.20.130.10 305 487 2.1E-60 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMD27_02390 81e6ff28dfa7b05447b26e7e77b3cd25 508 SUPERFAMILY SSF117457 317 486 6.93E-64 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 PIRSF PIRSF002191 1 125 1.7E-50 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 PRINTS PR00061 Ribosomal protein L19 signature 7 36 7.3E-41 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 PRINTS PR00061 Ribosomal protein L19 signature 91 116 7.3E-41 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 PRINTS PR00061 Ribosomal protein L19 signature 37 66 7.3E-41 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 Gene3D G3DSA:2.30.30.790 14 121 1.1E-16 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 SUPERFAMILY SSF50104 5 120 2.31E-46 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 Pfam PF01245 Ribosomal protein L19 7 116 7.9E-50 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 7 116 7.1E-50 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_01680 0b38036ccccb325ca7d3720c5eb54403 125 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 5 117 30.962 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14090 a04f258214eca6462e461911b8f37c70 242 SUPERFAMILY SSF52317 47 204 1.86E-41 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_14090 a04f258214eca6462e461911b8f37c70 242 Gene3D G3DSA:3.40.50.880 4 241 1.4E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_14090 a04f258214eca6462e461911b8f37c70 242 Pfam PF00117 Glutamine amidotransferase class-I 49 193 2.2E-18 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 Gene3D G3DSA:1.10.10.1590 16 85 9.9E-15 T 11-10-2018 AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 SUPERFAMILY SSF52833 19 168 2.12E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 25 168 2.5E-46 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 PIRSF PIRSF000216 5 169 6.4E-48 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 126 144 - T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 Gene3D G3DSA:3.40.30.10 86 168 7.7E-23 T 11-10-2018 AMD27_12360 6a503fc2b2ffa9b24909bddb7011648d 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 168 2.2E-45 T 11-10-2018 AMD27_04785 33440875c556e6866da1f8ed099c0eb5 425 Gene3D G3DSA:3.40.190.170 135 388 5.6E-15 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 Gene3D G3DSA:2.40.50.140 32 116 1.7E-17 T 11-10-2018 AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 Gene3D G3DSA:3.40.50.300 117 285 4.0E-44 T 11-10-2018 AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 Gene3D G3DSA:1.10.40.50 286 353 1.7E-22 T 11-10-2018 AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 34 350 32.941 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 Pfam PF03193 RsgA GTPase 114 286 7.2E-48 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 SUPERFAMILY SSF52540 128 348 6.27E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13600 027348a2f0922b7a87c22491765e32e8 353 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 92 343 1.6E-69 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AMD27_05715 dd0c87eed19c7bd4932b15f31fa57b8f 265 Gene3D G3DSA:1.10.12.10 209 265 1.2E-13 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_05715 dd0c87eed19c7bd4932b15f31fa57b8f 265 Gene3D G3DSA:3.90.226.10 1 207 3.0E-53 T 11-10-2018 AMD27_05715 dd0c87eed19c7bd4932b15f31fa57b8f 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 264 6.8E-52 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_05715 dd0c87eed19c7bd4932b15f31fa57b8f 265 SUPERFAMILY SSF52096 3 264 1.71E-66 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_03445 35860e8dd110d9f07769d66e2da798d8 105 Gene3D G3DSA:1.10.3730.20 1 105 6.0E-31 T 11-10-2018 AMD27_03445 35860e8dd110d9f07769d66e2da798d8 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 4.0E-29 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMD27_03445 35860e8dd110d9f07769d66e2da798d8 105 SUPERFAMILY SSF103481 5 104 1.96E-20 T 11-10-2018 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 Gene3D G3DSA:3.20.20.70 7 298 9.9E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 1.6E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 1.6E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 1.6E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 1.6E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 SUPERFAMILY SSF51569 7 295 2.09E-104 T 11-10-2018 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 PIRSF PIRSF001365 3 297 5.5E-93 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 Pfam PF00701 Dihydrodipicolinate synthetase family 9 294 5.4E-102 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 294 66.812 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 139 169 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 SMART SM01130 7 296 2.9E-142 T 11-10-2018 IPR002220 DapA-like GO:0016829 AMD27_15745 ba8211b9262b187696888056d7bebe25 298 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 293 7.3E-110 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.0E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.0E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.0E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.0E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.0E-21 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 SUPERFAMILY SSF51735 4 246 3.4E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 Pfam PF00106 short chain dehydrogenase 5 189 2.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 Gene3D G3DSA:3.40.50.720 2 249 3.0E-56 T 11-10-2018 AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 7.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 7.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_02635 1f46e24c4c46ee82e3565a15502bf046 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 7.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 SUPERFAMILY SSF54292 246 339 2.49E-13 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 SUPERFAMILY SSF52343 117 240 1.22E-19 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 267 308 1.8E-4 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 SUPERFAMILY SSF63380 24 130 1.29E-18 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Gene3D G3DSA:2.40.30.10 27 125 7.1E-14 T 11-10-2018 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 115 129 2.7E-5 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 137 156 2.7E-5 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 PRINTS PR00409 Phthalate dioxygenase reductase family signature 218 226 2.7E-5 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Pfam PF00175 Oxidoreductase NAD-binding domain 138 231 4.7E-7 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Gene3D G3DSA:3.10.20.30 254 340 2.1E-10 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Gene3D G3DSA:3.40.50.80 127 253 2.4E-20 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_00285 7610d6fe84ba2eab0d1901bc972060ad 340 Pfam PF00970 Oxidoreductase FAD-binding domain 35 127 1.6E-7 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 Gene3D G3DSA:3.50.50.60 111 248 1.3E-81 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 Gene3D G3DSA:3.50.50.60 5 284 1.3E-81 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 Gene3D G3DSA:3.30.390.120 320 384 7.9E-12 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 286 4.6E-55 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 6.0E-23 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 6.0E-23 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 6.0E-23 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 6.0E-23 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.0E-23 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 SUPERFAMILY SSF51905 3 309 1.5E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 237 251 5.1E-17 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 5.1E-17 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 5.1E-17 T 11-10-2018 AMD27_04170 c8a6665a0b1f7cd8eb0a7a6f96b5596a 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 5.1E-17 T 11-10-2018 AMD27_15985 041bf373edec3901257963ffd66bd7e8 371 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 4 360 6.9E-106 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA AMD27_15985 041bf373edec3901257963ffd66bd7e8 371 Pfam PF06812 ImpA, N-terminal, type VI secretion system 9 131 1.4E-31 T 11-10-2018 IPR010657 ImpA, N-terminal AMD27_12735 f07a79b54c98e6a061ccf805a8f4ef51 394 Gene3D G3DSA:2.120.10.30 46 383 2.4E-14 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMD27_12735 f07a79b54c98e6a061ccf805a8f4ef51 394 Pfam PF07995 Glucose / Sorbosone dehydrogenase 166 323 2.8E-7 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMD27_12735 f07a79b54c98e6a061ccf805a8f4ef51 394 SUPERFAMILY SSF63829 36 275 3.4E-15 T 11-10-2018 AMD27_12945 b5268134909cf32dac220b529813ecdc 487 Pfam PF13091 PLD-like domain 316 450 8.4E-25 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMD27_12945 b5268134909cf32dac220b529813ecdc 487 SUPERFAMILY SSF56024 304 447 8.05E-21 T 11-10-2018 AMD27_12945 b5268134909cf32dac220b529813ecdc 487 SUPERFAMILY SSF56024 75 264 2.24E-16 T 11-10-2018 AMD27_12945 b5268134909cf32dac220b529813ecdc 487 Gene3D G3DSA:3.30.870.10 299 459 1.5E-28 T 11-10-2018 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 SUPERFAMILY SSF48498 76 184 1.11E-21 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 Gene3D G3DSA:1.10.357.10 66 193 2.9E-28 T 11-10-2018 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 Gene3D G3DSA:1.10.10.60 1 64 2.1E-22 T 11-10-2018 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 53 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 54 1.1E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 4.1E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 4.1E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_12445 3debf6b8023d4a82aaeb7072ffcc4c3e 193 SUPERFAMILY SSF46689 3 65 1.18E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 SUPERFAMILY SSF55031 181 290 1.5E-31 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 SUPERFAMILY SSF53187 3 376 7.14E-64 T 11-10-2018 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 Gene3D G3DSA:3.30.70.360 181 294 2.2E-131 T 11-10-2018 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 Pfam PF01546 Peptidase family M20/M25/M40 64 373 8.2E-44 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 51.992 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 8 375 1.0E-167 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 Gene3D G3DSA:3.40.630.10 12 364 2.2E-131 T 11-10-2018 AMD27_12105 4b86f60237365deba6f918feafb11a3b 377 Pfam PF07687 Peptidase dimerisation domain 177 284 4.6E-24 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain AMD27_07530 ad2a6c5b3ea8cab6f58cb058d48d2261 381 PIRSF PIRSF000267 2 380 3.0E-118 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMD27_07530 ad2a6c5b3ea8cab6f58cb058d48d2261 381 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 381 4.9E-150 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMD27_07530 ad2a6c5b3ea8cab6f58cb058d48d2261 381 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 364 1.3E-103 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 308 321 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 Gene3D G3DSA:3.30.9.50 84 283 2.8E-90 T 11-10-2018 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 Pfam PF01494 FAD binding domain 10 359 2.2E-33 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 Gene3D G3DSA:3.50.50.60 10 351 2.8E-90 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 SUPERFAMILY SSF51905 7 406 4.4E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 402 2.3E-104 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 2.1E-19 T 11-10-2018 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 325 2.1E-19 T 11-10-2018 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 2.1E-19 T 11-10-2018 AMD27_04880 d470abb249cae02956c288ace8b9c1e4 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 2.1E-19 T 11-10-2018 AMD27_15935 cf6a6380ea656d671a26fc391ba99b39 1286 Pfam PF06744 Type VI secretion protein IcmF C-terminal 976 1184 1.6E-41 T 11-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal AMD27_15935 cf6a6380ea656d671a26fc391ba99b39 1286 SUPERFAMILY SSF52540 118 322 8.82E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15935 cf6a6380ea656d671a26fc391ba99b39 1286 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 44 1195 3.1E-196 T 11-10-2018 IPR017731 Type VI secretion system, IcmF AMD27_15935 cf6a6380ea656d671a26fc391ba99b39 1286 Pfam PF14331 ImcF-related N-terminal domain 188 446 1.3E-78 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain AMD27_15935 cf6a6380ea656d671a26fc391ba99b39 1286 Pfam PF06761 Intracellular multiplication and human macrophage-killing 497 841 1.9E-79 T 11-10-2018 IPR009612 ImcF-related AMD27_03940 e3d44e7386e7c338f7ea07ee444029f2 101 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 1.0E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMD27_03940 e3d44e7386e7c338f7ea07ee444029f2 101 Gene3D G3DSA:2.102.10.10 1 101 3.3E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_03940 e3d44e7386e7c338f7ea07ee444029f2 101 SUPERFAMILY SSF50022 2 101 1.96E-30 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_11800 a50c6a14a47f49139cd5ac5fc2542a99 496 Gene3D G3DSA:1.20.1730.10 24 495 3.6E-94 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMD27_11800 a50c6a14a47f49139cd5ac5fc2542a99 496 Pfam PF00474 Sodium:solute symporter family 35 437 3.9E-130 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_11800 a50c6a14a47f49139cd5ac5fc2542a99 496 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMD27_11800 a50c6a14a47f49139cd5ac5fc2542a99 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 491 7.5E-220 T 11-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 AMD27_11800 a50c6a14a47f49139cd5ac5fc2542a99 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 7.7E-118 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_16635 7a97056a204dad9e2fa38e617474914b 399 Pfam PF06834 TraU protein 52 327 3.3E-71 T 11-10-2018 IPR009649 TraU AMD27_16635 7a97056a204dad9e2fa38e617474914b 399 Pfam PF06834 TraU protein 352 393 1.4E-9 T 11-10-2018 IPR009649 TraU AMD27_00365 03f7e7c6ed135f0d7005a52875614e1d 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 8.5E-98 T 11-10-2018 IPR016040 NAD(P)-binding domain AMD27_00365 03f7e7c6ed135f0d7005a52875614e1d 351 Gene3D G3DSA:3.40.50.720 2 323 4.5E-137 T 11-10-2018 AMD27_00365 03f7e7c6ed135f0d7005a52875614e1d 351 SUPERFAMILY SSF51735 1 348 5.56E-93 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00365 03f7e7c6ed135f0d7005a52875614e1d 351 Gene3D G3DSA:3.90.25.10 201 331 4.5E-137 T 11-10-2018 AMD27_00365 03f7e7c6ed135f0d7005a52875614e1d 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 337 2.0E-155 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Gene3D G3DSA:2.40.50.100 59 221 1.4E-79 T 11-10-2018 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Gene3D G3DSA:2.20.25.620 380 431 8.8E-7 T 11-10-2018 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Gene3D G3DSA:2.40.420.20 43 328 1.4E-79 T 11-10-2018 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 266 7.0E-13 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 SUPERFAMILY SSF111369 51 273 3.4E-24 T 11-10-2018 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 328 1.7E-40 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Gene3D G3DSA:1.10.287.470 93 184 1.4E-79 T 11-10-2018 AMD27_13550 342a6b317e3e951f877d99c8000f5176 455 Gene3D G3DSA:2.40.30.170 48 311 1.4E-79 T 11-10-2018 AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 181 1.1E-50 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 PIRSF PIRSF006305 1 186 1.5E-51 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 Pfam PF02545 Maf-like protein 4 183 9.4E-57 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 Gene3D G3DSA:3.90.950.10 1 186 9.1E-68 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 Hamap MF_00528 Septum formation protein Maf [maf]. 3 186 28.841 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 AMD27_11865 9d36f6a5b7358fc8a9cdc20e0ca382b9 186 SUPERFAMILY SSF52972 2 183 3.66E-60 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_05675 422ae8712fe77ffa658536f9af22625b 195 Gene3D G3DSA:3.10.180.10 25 192 5.5E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_05675 422ae8712fe77ffa658536f9af22625b 195 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 31 159 1.9E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMD27_05675 422ae8712fe77ffa658536f9af22625b 195 SUPERFAMILY SSF54593 27 163 9.74E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 SUPERFAMILY SSF50129 7 173 4.41E-51 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 Pfam PF00107 Zinc-binding dehydrogenase 187 306 4.7E-21 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 SMART SM00829 9 342 1.0E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 Gene3D G3DSA:3.40.50.720 168 321 2.0E-134 T 11-10-2018 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 146 1.1E-26 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 Gene3D G3DSA:3.90.180.10 10 341 2.0E-134 T 11-10-2018 AMD27_09300 1a862ce89945d2645a3f6ac85ab91d5a 350 SUPERFAMILY SSF51735 150 312 1.18E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 Pfam PF00557 Metallopeptidase family M24 15 245 7.2E-51 T 11-10-2018 IPR000994 Peptidase M24 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 Gene3D G3DSA:3.90.230.10 4 257 1.5E-104 T 11-10-2018 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 6.8E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 6.8E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 6.8E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 6.8E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 Hamap MF_01974 Methionine aminopeptidase [map]. 6 254 39.869 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 6 252 3.6E-94 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMD27_07105 e6c210007dbe281fbcc8bfa4ed9ab00f 264 SUPERFAMILY SSF55920 6 257 1.22E-89 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like AMD27_10135 b8bc8a6d0e0f854eb0d410a3a65ad071 261 Gene3D G3DSA:3.20.20.70 1 259 4.7E-117 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_10135 b8bc8a6d0e0f854eb0d410a3a65ad071 261 Hamap MF_00443 Thiazole synthase [thiG]. 5 260 41.69 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMD27_10135 b8bc8a6d0e0f854eb0d410a3a65ad071 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 254 1.7E-108 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMD27_10135 b8bc8a6d0e0f854eb0d410a3a65ad071 261 SUPERFAMILY SSF110399 5 246 4.84E-89 T 11-10-2018 AMD27_07345 20bb72614b9cfcb13de02baa60180102 313 Pfam PF01148 Cytidylyltransferase family 47 311 5.5E-64 T 11-10-2018 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 257 1.4E-92 T 11-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 4.6E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 4.6E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 4.6E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 4.6E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 Gene3D G3DSA:3.40.50.1820 3 258 5.2E-69 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 Pfam PF00561 alpha/beta hydrolase fold 22 245 2.9E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_07820 535f7ea9c753954216a6892a80e738a5 259 SUPERFAMILY SSF53474 1 257 9.41E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 SUPERFAMILY SSF63411 750 912 3.17E-26 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 SUPERFAMILY SSF63411 284 460 8.98E-16 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Pfam PF00675 Insulinase (Peptidase family M16) 52 188 3.0E-16 T 11-10-2018 IPR011765 Peptidase M16, N-terminal AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 SUPERFAMILY SSF63411 495 718 1.92E-28 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Pfam PF05193 Peptidase M16 inactive domain 670 848 1.6E-23 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Pfam PF05193 Peptidase M16 inactive domain 200 372 1.4E-15 T 11-10-2018 IPR007863 Peptidase M16, C-terminal AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 SUPERFAMILY SSF63411 32 245 1.92E-50 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Gene3D G3DSA:3.30.830.10 29 252 2.8E-55 T 11-10-2018 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 65 88 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Gene3D G3DSA:3.30.830.10 743 918 2.6E-34 T 11-10-2018 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Gene3D G3DSA:3.30.830.10 270 459 6.6E-22 T 11-10-2018 AMD27_05385 a7011c111b834b69045ffbf9b453c49f 929 Gene3D G3DSA:3.30.830.10 502 715 3.5E-25 T 11-10-2018 AMD27_09170 96690fadd6fe560f073479b42f08cd23 361 Gene3D G3DSA:3.40.50.1820 69 360 4.4E-19 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09170 96690fadd6fe560f073479b42f08cd23 361 SUPERFAMILY SSF53474 82 359 7.02E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09170 96690fadd6fe560f073479b42f08cd23 361 PIRSF PIRSF005211 2 361 4.9E-53 T 11-10-2018 IPR012020 AB hydrolase 4 family AMD27_00465 d06b7a160714482e16a6fe135af52817 102 Gene3D G3DSA:3.30.300.90 2 89 1.5E-22 T 11-10-2018 AMD27_00465 d06b7a160714482e16a6fe135af52817 102 SUPERFAMILY SSF82657 4 87 1.57E-23 T 11-10-2018 IPR036065 BolA-like superfamily AMD27_00465 d06b7a160714482e16a6fe135af52817 102 Pfam PF01722 BolA-like protein 12 84 1.8E-22 T 11-10-2018 IPR002634 BolA protein AMD27_00465 d06b7a160714482e16a6fe135af52817 102 PIRSF PIRSF003113 1 98 6.2E-29 T 11-10-2018 IPR002634 BolA protein AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 Gene3D G3DSA:2.40.10.240 63 159 2.3E-111 T 11-10-2018 AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 Pfam PF02547 Queuosine biosynthesis protein 3 340 5.7E-124 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 44.002 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 Gene3D G3DSA:3.40.1780.10 14 340 2.3E-111 T 11-10-2018 AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 SUPERFAMILY SSF111337 1 340 3.66E-124 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMD27_13295 21637f05a1475440325a9ac6aa0c1788 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 340 1.9E-131 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMD27_06145 44e35e7834d358bc368ee32a00bacfb3 198 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 3.0E-28 T 11-10-2018 IPR001498 Impact, N-terminal AMD27_06145 44e35e7834d358bc368ee32a00bacfb3 198 SUPERFAMILY SSF54211 5 122 1.59E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_06145 44e35e7834d358bc368ee32a00bacfb3 198 SUPERFAMILY SSF54980 127 190 1.73E-6 T 11-10-2018 IPR035647 EF-G domain III/V-like AMD27_06145 44e35e7834d358bc368ee32a00bacfb3 198 Gene3D G3DSA:3.30.230.30 1 125 2.6E-43 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily AMD27_06145 44e35e7834d358bc368ee32a00bacfb3 198 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 79 313 38.482 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 Gene3D G3DSA:3.40.50.150 94 314 1.4E-73 T 11-10-2018 AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 88 313 6.2E-83 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 SUPERFAMILY SSF53335 81 311 2.01E-48 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 221 235 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 99 114 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMD27_14525 0be90bf532e544b11853d9f5e1e24cb0 314 Pfam PF01209 ubiE/COQ5 methyltransferase family 83 313 1.3E-98 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMD27_12850 a926e592e1d8e04f0a96d3ce91012c32 618 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 161 1.9E-24 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_12850 a926e592e1d8e04f0a96d3ce91012c32 618 Pfam PF00593 TonB dependent receptor 230 617 2.2E-44 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_12850 a926e592e1d8e04f0a96d3ce91012c32 618 Gene3D G3DSA:2.170.130.10 41 164 1.1E-32 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_12850 a926e592e1d8e04f0a96d3ce91012c32 618 Gene3D G3DSA:2.40.170.20 169 618 8.1E-72 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_12850 a926e592e1d8e04f0a96d3ce91012c32 618 SUPERFAMILY SSF56935 43 618 1.21E-108 T 11-10-2018 AMD27_11160 e5026332d849ff4505bae208dde93109 450 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 211 230 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 409 429 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 350 372 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 183 201 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 302 320 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 PRINTS PR00175 Sodium/alanine symporter signature 92 114 1.1E-54 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 Pfam PF01235 Sodium:alanine symporter family 56 448 4.5E-154 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_11160 e5026332d849ff4505bae208dde93109 450 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 440 1.3E-156 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMD27_15360 0fa8011add4af100456aa426727ce4a3 145 Gene3D G3DSA:2.40.128.520 23 145 5.1E-18 T 11-10-2018 AMD27_15360 0fa8011add4af100456aa426727ce4a3 145 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 27 143 2.1E-25 T 11-10-2018 IPR019223 Domain of unknown function DUF2147 AMD27_14815 1f75ccb1578b4d5361673867f91517ea 243 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 233 7.0E-79 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMD27_14815 1f75ccb1578b4d5361673867f91517ea 243 SUPERFAMILY SSF51366 1 238 3.85E-74 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMD27_14815 1f75ccb1578b4d5361673867f91517ea 243 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 35.86 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMD27_14815 1f75ccb1578b4d5361673867f91517ea 243 Gene3D G3DSA:3.20.20.70 2 242 6.5E-86 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_14815 1f75ccb1578b4d5361673867f91517ea 243 Pfam PF00977 Histidine biosynthesis protein 3 229 3.6E-78 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMD27_10850 145be219b2cb99281f40d88743268ee4 278 Pfam PF02219 Methylenetetrahydrofolate reductase 3 270 1.3E-79 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMD27_10850 145be219b2cb99281f40d88743268ee4 278 Gene3D G3DSA:3.20.20.220 1 278 2.8E-89 T 11-10-2018 AMD27_10850 145be219b2cb99281f40d88743268ee4 278 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 272 1.2E-91 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AMD27_10850 145be219b2cb99281f40d88743268ee4 278 SUPERFAMILY SSF51730 3 276 3.53E-86 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Gene3D G3DSA:2.40.420.20 309 378 8.7E-104 T 11-10-2018 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Pfam PF00529 HlyD membrane-fusion protein of T1SS 299 365 1.7E-6 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 SUPERFAMILY SSF111369 59 305 1.96E-79 T 11-10-2018 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Gene3D G3DSA:1.10.287.470 105 178 8.7E-104 T 11-10-2018 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 380 1.5E-78 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 298 1.4E-15 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Gene3D G3DSA:2.40.30.170 56 308 8.7E-104 T 11-10-2018 AMD27_04290 5992286bf9c8ef415e429202e5717cd7 420 Gene3D G3DSA:2.40.50.100 70 214 8.7E-104 T 11-10-2018 AMD27_09700 c9c2730430c6a41e2b12d7d6841ca3fa 827 Pfam PF03968 OstA-like protein 104 236 3.7E-9 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMD27_09700 c9c2730430c6a41e2b12d7d6841ca3fa 827 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 12 802 18.909 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AMD27_09700 c9c2730430c6a41e2b12d7d6841ca3fa 827 Pfam PF04453 Organic solvent tolerance protein 343 735 1.7E-78 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 Pfam PF00795 Carbon-nitrogen hydrolase 6 242 7.6E-28 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 SUPERFAMILY SSF56317 1 243 6.67E-62 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 Pfam PF02540 NAD synthase 264 513 5.1E-73 T 11-10-2018 IPR022310 NAD/GMP synthase AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 PIRSF PIRSF006630 1 540 4.8E-202 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 SUPERFAMILY SSF52402 259 523 4.66E-76 T 11-10-2018 AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 4 539 27.95 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 Gene3D G3DSA:3.40.50.620 261 541 4.0E-111 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 Gene3D G3DSA:3.60.110.10 1 260 5.3E-103 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_04600 52898ff81be01829c1363d6722bb8ba6 541 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 513 2.2E-60 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMD27_14110 9c3254ea7ef7a4282fd19b98387ae954 147 Pfam PF02082 Transcriptional regulator 1 81 1.0E-17 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMD27_14110 9c3254ea7ef7a4282fd19b98387ae954 147 SUPERFAMILY SSF46785 2 130 5.46E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_14110 9c3254ea7ef7a4282fd19b98387ae954 147 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 3.2E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type AMD27_14110 9c3254ea7ef7a4282fd19b98387ae954 147 Gene3D G3DSA:1.10.10.10 1 136 6.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 Pfam PF01039 Carboxyl transferase domain 113 257 7.4E-19 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 296 34.883 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 42 297 2.8E-107 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 SUPERFAMILY SSF52096 43 296 7.46E-76 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 Gene3D G3DSA:3.90.226.10 42 297 2.6E-75 T 11-10-2018 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 178 196 4.7E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 215 232 4.7E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 266 275 4.7E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 244 255 4.7E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_03175 e90c1c4f7709ef78aeee0ff017e2ce33 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 144 158 4.7E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMD27_00395 8af4ca7521470a02560c09a6139e2e5e 366 Gene3D G3DSA:3.40.50.2000 187 348 9.3E-15 T 11-10-2018 AMD27_00395 8af4ca7521470a02560c09a6139e2e5e 366 Pfam PF00534 Glycosyl transferases group 1 182 346 1.5E-9 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMD27_00395 8af4ca7521470a02560c09a6139e2e5e 366 SUPERFAMILY SSF53756 43 362 6.91E-27 T 11-10-2018 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 SUPERFAMILY SSF53901 269 390 1.97E-40 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 Pfam PF00108 Thiolase, N-terminal domain 4 259 3.8E-86 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 5.4E-129 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 4.5E-44 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 PIRSF PIRSF000429 1 391 1.1E-114 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 Gene3D G3DSA:3.40.47.10 6 274 1.0E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 Gene3D G3DSA:3.40.47.10 126 388 1.0E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_12810 b36bcb218dc3af8d9efa1860dc95e0c1 391 SUPERFAMILY SSF53901 3 267 1.73E-78 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_02510 bef91467a7cf4d37d7aa6fe04a5d1b2f 259 Gene3D G3DSA:3.90.1070.10 104 188 1.6E-10 T 11-10-2018 AMD27_02510 bef91467a7cf4d37d7aa6fe04a5d1b2f 259 PIRSF PIRSF030802 2 250 1.6E-57 T 11-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 AMD27_02510 bef91467a7cf4d37d7aa6fe04a5d1b2f 259 Gene3D G3DSA:3.40.50.1000 6 236 1.6E-10 T 11-10-2018 IPR023214 HAD superfamily AMD27_02510 bef91467a7cf4d37d7aa6fe04a5d1b2f 259 SUPERFAMILY SSF56784 1 231 2.78E-17 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_14875 aae69b9aa244bf8f133efac8c6480312 626 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 6 626 33.31 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMD27_14875 aae69b9aa244bf8f133efac8c6480312 626 Pfam PF02705 K+ potassium transporter 15 547 2.2E-198 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMD27_07150 ea34613ab4593fda00dd0ecfc526dcea 284 SUPERFAMILY SSF54637 37 154 5.72E-5 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_07150 ea34613ab4593fda00dd0ecfc526dcea 284 SUPERFAMILY SSF54637 177 281 3.89E-16 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_07150 ea34613ab4593fda00dd0ecfc526dcea 284 Gene3D G3DSA:3.10.129.10 33 284 1.5E-61 T 11-10-2018 AMD27_07150 ea34613ab4593fda00dd0ecfc526dcea 284 Pfam PF01575 MaoC like domain 182 226 1.3E-10 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMD27_06035 11528a39e966a5c73c1a0d42d914f260 73 Gene3D G3DSA:2.30.30.320 1 73 6.3E-28 T 11-10-2018 IPR037135 DUF1653-like domain superfamily AMD27_06035 11528a39e966a5c73c1a0d42d914f260 73 Pfam PF07866 Protein of unknown function (DUF1653) 6 67 1.0E-27 T 11-10-2018 IPR023387 DUF1653-like domain AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 SUPERFAMILY SSF52743 145 421 3.01E-51 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 160 179 1.2E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 375 391 1.2E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 208 221 1.2E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 Gene3D G3DSA:3.40.50.200 142 430 3.9E-56 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 Pfam PF00082 Subtilase family 160 412 2.7E-26 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMD27_13505 9b2d61a5c64b166a49c3e3fefd83cfbb 441 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 376 386 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site AMD27_03505 fcdb85c1071cfa5d332421b0d5cd3313 150 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 7 148 1.2E-41 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMD27_03505 fcdb85c1071cfa5d332421b0d5cd3313 150 PIRSF PIRSF004638 1 150 4.3E-51 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMD27_03505 fcdb85c1071cfa5d332421b0d5cd3313 150 Pfam PF03653 Uncharacterised protein family (UPF0093) 6 148 4.0E-49 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMD27_04260 19ceeb63fbf1cfb5b69880ccd3059da5 142 SUPERFAMILY SSF54427 14 130 2.01E-22 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_04260 19ceeb63fbf1cfb5b69880ccd3059da5 142 Pfam PF12680 SnoaL-like domain 23 122 1.1E-10 T 11-10-2018 IPR037401 SnoaL-like domain AMD27_04260 19ceeb63fbf1cfb5b69880ccd3059da5 142 Gene3D G3DSA:3.10.450.50 8 142 6.0E-31 T 11-10-2018 AMD27_10335 0bf5599e723c19db8097f2a2bae37f5b 334 Gene3D G3DSA:3.20.20.140 1 333 1.8E-109 T 11-10-2018 AMD27_10335 0bf5599e723c19db8097f2a2bae37f5b 334 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 10 326 3.3E-126 T 11-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 AMD27_10335 0bf5599e723c19db8097f2a2bae37f5b 334 Hamap MF_01962 Adenine deaminase. 6 318 89.997 T 11-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMD27_10335 0bf5599e723c19db8097f2a2bae37f5b 334 SUPERFAMILY SSF51556 5 331 1.13E-92 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_10335 0bf5599e723c19db8097f2a2bae37f5b 334 Pfam PF00962 Adenosine/AMP deaminase 10 327 2.8E-81 T 11-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 AMD27_03165 cb639399c9b531a3a9e6dbc8022599f6 443 Pfam PF03553 Na+/H+ antiporter family 86 221 1.1E-11 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AMD27_03165 cb639399c9b531a3a9e6dbc8022599f6 443 Pfam PF03553 Na+/H+ antiporter family 234 435 1.2E-8 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Gene3D G3DSA:3.40.120.10 2 149 2.7E-39 T 11-10-2018 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 SUPERFAMILY SSF53738 265 374 2.51E-21 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 SUPERFAMILY SSF53738 5 182 3.61E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 3.7E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 98 112 3.7E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 210 223 3.7E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 239 254 3.7E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Gene3D G3DSA:3.30.310.50 380 469 2.5E-14 T 11-10-2018 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Gene3D G3DSA:3.40.120.10 178 255 2.2E-24 T 11-10-2018 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 99 108 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 408 459 6.4E-6 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Gene3D G3DSA:3.40.120.10 258 378 2.8E-31 T 11-10-2018 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 258 2.7E-24 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 265 378 2.7E-16 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 10 136 9.8E-28 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 SUPERFAMILY SSF53738 163 261 8.24E-25 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_03620 17308f44c8c43f98a8a899530c55ac4c 475 SUPERFAMILY SSF55957 390 465 2.96E-11 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMD27_10365 731844409258a01fcdf3e7d47ae23f8f 251 Gene3D G3DSA:3.40.50.850 14 250 6.9E-57 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_10365 731844409258a01fcdf3e7d47ae23f8f 251 Hamap MF_00830 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB [rutB]. 20 247 59.659 T 11-10-2018 IPR019916 Isochorismatase, RutB GO:0016811 KEGG: 00240+3.5.1.110 AMD27_10365 731844409258a01fcdf3e7d47ae23f8f 251 SUPERFAMILY SSF52499 22 242 8.11E-55 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_10365 731844409258a01fcdf3e7d47ae23f8f 251 TIGRFAM TIGR03614 RutB: pyrimidine utilization protein B 22 244 1.8E-128 T 11-10-2018 IPR019916 Isochorismatase, RutB GO:0016811 KEGG: 00240+3.5.1.110 AMD27_10365 731844409258a01fcdf3e7d47ae23f8f 251 Pfam PF00857 Isochorismatase family 37 234 1.5E-40 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMD27_14625 9666a1bf0817140b6911440d844dc24b 164 PIRSF PIRSF016481 1 161 1.5E-34 T 11-10-2018 IPR007446 Pilus assembly protein PilP AMD27_14625 9666a1bf0817140b6911440d844dc24b 164 Pfam PF04351 Pilus assembly protein, PilP 16 159 1.6E-39 T 11-10-2018 IPR007446 Pilus assembly protein PilP AMD27_14625 9666a1bf0817140b6911440d844dc24b 164 Gene3D G3DSA:2.30.30.830 66 160 1.1E-26 T 11-10-2018 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 102 115 5.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 5.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 149 5.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 178 191 5.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 151 171 5.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 SUPERFAMILY SSF56784 5 216 1.27E-31 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 186 5.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 186 1.4E-15 T 11-10-2018 AMD27_08825 2d26879fce0964e161ae4c722d1085eb 239 Gene3D G3DSA:3.40.50.1000 9 202 6.3E-25 T 11-10-2018 IPR023214 HAD superfamily AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 SUPERFAMILY SSF50677 196 367 9.68E-52 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Gene3D G3DSA:1.10.730.10 589 830 8.4E-72 T 11-10-2018 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Gene3D G3DSA:3.40.50.620 9 210 2.5E-67 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 TIGRFAM TIGR00422 valS: valine--tRNA ligase 9 944 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Pfam PF08264 Anticodon-binding domain of tRNA 685 832 4.3E-39 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 642 3.0E-206 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 SUPERFAMILY SSF46589 897 961 1.46E-15 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Gene3D G3DSA:3.90.740.10 211 361 7.4E-34 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 PRINTS PR00986 Valyl-tRNA synthetase signature 374 387 1.3E-30 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 PRINTS PR00986 Valyl-tRNA synthetase signature 511 529 1.3E-30 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 PRINTS PR00986 Valyl-tRNA synthetase signature 474 495 1.3E-30 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 PRINTS PR00986 Valyl-tRNA synthetase signature 242 259 1.3E-30 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 PRINTS PR00986 Valyl-tRNA synthetase signature 40 51 1.3E-30 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Gene3D G3DSA:1.10.287.380 890 962 2.2E-20 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 962 15.621 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 SUPERFAMILY SSF47323 653 912 3.74E-67 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Gene3D G3DSA:3.40.50.620 371 564 1.5E-43 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 SUPERFAMILY SSF52374 8 652 6.14E-137 T 11-10-2018 AMD27_04245 18ba92799f6ad09aa490e2876a574292 964 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 897 961 2.8E-20 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMD27_17095 306944a13371dc9a7701636858453b29 256 Gene3D G3DSA:1.10.290.10 4 137 1.3E-8 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMD27_17095 306944a13371dc9a7701636858453b29 256 SUPERFAMILY SSF56712 3 143 3.79E-10 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMD27_17095 306944a13371dc9a7701636858453b29 256 Pfam PF01131 DNA topoisomerase 3 142 5.6E-11 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 Pfam PF00561 alpha/beta hydrolase fold 71 180 1.7E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 Gene3D G3DSA:3.40.50.1820 30 320 2.6E-82 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_11655 053172307cb256b3333877c79e96e9e5 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 111 5.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 263 277 5.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 156 169 5.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 5.9E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_11655 053172307cb256b3333877c79e96e9e5 322 SUPERFAMILY SSF53474 46 318 1.27E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 SUPERFAMILY SSF53901 5 262 1.2E-73 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 8 390 6.5E-191 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 Gene3D G3DSA:3.40.47.10 9 271 2.2E-143 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 Pfam PF02803 Thiolase, C-terminal domain 265 389 9.7E-48 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 ProSitePatterns PS00099 Thiolases active site. 371 384 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 Pfam PF00108 Thiolase, N-terminal domain 9 256 3.4E-74 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 SUPERFAMILY SSF53901 266 389 5.18E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 Gene3D G3DSA:3.40.47.10 138 384 2.2E-143 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 6 390 61.465 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 388 2.5E-131 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_01335 931f3c5b2fe5f985922d925b42af9549 390 PIRSF PIRSF000429 3 390 6.2E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 AMD27_17760 80012f807d9db5eaca432db58ad3c943 167 Pfam PF10881 Protein of unknown function (DUF2726) 42 154 3.1E-21 T 11-10-2018 IPR024402 Domain of unknown function DUF2726 AMD27_17760 80012f807d9db5eaca432db58ad3c943 167 Gene3D G3DSA:3.40.960.10 46 165 6.5E-9 T 11-10-2018 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Gene3D G3DSA:2.40.110.10 133 247 8.7E-42 T 11-10-2018 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Gene3D G3DSA:1.10.540.10 10 132 1.1E-35 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 230 3.2E-26 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Gene3D G3DSA:1.20.140.10 248 390 3.6E-41 T 11-10-2018 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 SUPERFAMILY SSF56645 15 253 5.76E-85 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 390 6.6E-40 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 SUPERFAMILY SSF47203 241 390 1.5E-45 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_13940 7e130ff5608cbfb05a9df39c0931e375 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 130 1.8E-33 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 287 3.2E-45 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 Gene3D G3DSA:3.40.50.720 7 143 1.5E-32 T 11-10-2018 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 Gene3D G3DSA:3.90.25.10 218 354 8.5E-47 T 11-10-2018 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 SUPERFAMILY SSF51735 4 358 1.23E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 Gene3D G3DSA:3.40.50.720 176 342 8.5E-47 T 11-10-2018 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 PRINTS PR01713 Nucleotide sugar epimerase signature 281 296 1.1E-8 T 11-10-2018 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 PRINTS PR01713 Nucleotide sugar epimerase signature 258 273 1.1E-8 T 11-10-2018 AMD27_00420 c12840c3e2eb18643136360dd3d91ce6 379 PRINTS PR01713 Nucleotide sugar epimerase signature 321 338 1.1E-8 T 11-10-2018 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 SUPERFAMILY SSF143800 1 68 4.32E-26 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 Pfam PF01197 Ribosomal protein L31 1 65 8.9E-30 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 Gene3D G3DSA:2.30.170.50 1 70 5.9E-31 T 11-10-2018 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 1.1E-32 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 PRINTS PR01249 Ribosomal protein L31 signature 32 47 7.1E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 PRINTS PR01249 Ribosomal protein L31 signature 47 65 7.1E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.1E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_10445 cd85cc5650f45a1687642d8d81b2a10c 74 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 29.798 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 Pfam PF00698 Acyl transferase domain 17 284 5.1E-36 T 11-10-2018 IPR014043 Acyl transferase AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 SUPERFAMILY SSF55048 138 203 2.88E-15 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 SUPERFAMILY SSF52151 15 318 3.66E-70 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 Gene3D G3DSA:3.40.366.10 17 296 4.4E-94 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 14 298 1.0E-100 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 Gene3D G3DSA:3.30.70.250 134 207 4.4E-94 T 11-10-2018 AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 18 312 4.2E-39 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMD27_12480 92c67ea61632ce485a15708b2c797b1f 328 PIRSF PIRSF000446 12 321 2.0E-107 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMD27_16710 505b5412809c53a7f112f91ad4974327 154 Pfam PF00436 Single-strand binding protein family 5 97 1.1E-15 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMD27_16710 505b5412809c53a7f112f91ad4974327 154 SUPERFAMILY SSF50249 2 98 5.14E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_16710 505b5412809c53a7f112f91ad4974327 154 Gene3D G3DSA:2.40.50.140 1 103 2.1E-18 T 11-10-2018 AMD27_16710 505b5412809c53a7f112f91ad4974327 154 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 101 3.6E-17 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 SUPERFAMILY SSF100950 226 494 1.14E-80 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 495 1.7E-229 T 11-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 321 464 4.3E-41 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 12 215 1.1E-29 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 Gene3D G3DSA:3.30.750.70 256 326 8.4E-6 T 11-10-2018 AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 Gene3D G3DSA:3.40.1080.20 337 477 6.6E-39 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 Gene3D G3DSA:3.40.1080.10 13 184 1.1E-15 T 11-10-2018 AMD27_14760 b2cae3d33b76bad9ef4524ecdaefe657 505 SUPERFAMILY SSF100950 4 218 3.14E-73 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_05095 24f2a934889b752177a5d931da251c36 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 339 3.3E-142 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_05095 24f2a934889b752177a5d931da251c36 356 Gene3D G3DSA:3.30.1330.10 12 175 2.3E-66 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_05095 24f2a934889b752177a5d931da251c36 356 SUPERFAMILY SSF56042 176 342 2.69E-61 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05095 24f2a934889b752177a5d931da251c36 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 181 343 2.3E-36 T 11-10-2018 IPR010918 PurM-like, C-terminal domain AMD27_05095 24f2a934889b752177a5d931da251c36 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 169 3.7E-15 T 11-10-2018 IPR016188 PurM-like, N-terminal domain AMD27_05095 24f2a934889b752177a5d931da251c36 356 Gene3D G3DSA:3.90.650.10 176 347 1.5E-67 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMD27_05095 24f2a934889b752177a5d931da251c36 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 351 46.57 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMD27_05095 24f2a934889b752177a5d931da251c36 356 SUPERFAMILY SSF55326 13 175 1.08E-51 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMD27_07075 d216d92dba491a4620cb869de6d194e6 154 Gene3D G3DSA:1.10.10.10 2 153 8.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07075 d216d92dba491a4620cb869de6d194e6 154 Pfam PF01047 MarR family 51 102 4.8E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_07075 d216d92dba491a4620cb869de6d194e6 154 SMART SM00347 38 138 7.3E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_07075 d216d92dba491a4620cb869de6d194e6 154 SUPERFAMILY SSF46785 15 153 9.63E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_17335 abf136fd0c0dc2a9f9fbe3a66e695ace 188 SUPERFAMILY SSF46785 98 166 1.65E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_17335 abf136fd0c0dc2a9f9fbe3a66e695ace 188 Gene3D G3DSA:1.10.10.10 116 179 7.2E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11695 1b9b88f23bedbae18700c687d5c9e19c 248 Pfam PF01925 Sulfite exporter TauE/SafE 8 236 1.1E-29 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_17415 9a442fbace60d048e824b479352030ed 107 Pfam PF05534 HicB family 57 105 4.8E-14 T 11-10-2018 IPR008651 Uncharacterised protein family HicB AMD27_17415 9a442fbace60d048e824b479352030ed 107 SUPERFAMILY SSF143100 2 70 1.29E-7 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like AMD27_17415 9a442fbace60d048e824b479352030ed 107 SUPERFAMILY SSF47598 69 105 1.38E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 4 648 0.0 T 11-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 281 335 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 Gene3D G3DSA:1.20.210.10 31 563 8.8E-187 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 57 505 1.1E-136 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 98 121 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 384 402 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 279 300 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 199 217 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 340 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 228 247 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 462 483 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 125 149 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 412 431 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 48 73 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 167 179 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 349 370 6.4E-95 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06635 72d014966d28e231e1284889cae17f4c 662 SUPERFAMILY SSF81442 44 559 4.58E-175 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 Pfam PF11612 Type II secretion system (T2SS), protein J 62 193 3.1E-16 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 Gene3D G3DSA:3.10.610.10 41 146 1.2E-9 T 11-10-2018 AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 30 1.9E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 7.4E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 SUPERFAMILY SSF54523 43 202 1.26E-21 T 11-10-2018 AMD27_09615 b78ac8df616f83cbe78b2f44e85635f7 213 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 11 192 9.4E-21 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AMD27_08545 e60041b812bf57789c7bbfcba01b69a0 339 Gene3D G3DSA:1.10.443.10 167 337 7.2E-26 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_08545 e60041b812bf57789c7bbfcba01b69a0 339 SUPERFAMILY SSF56349 61 334 1.62E-54 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_08545 e60041b812bf57789c7bbfcba01b69a0 339 Pfam PF00589 Phage integrase family 167 326 2.2E-15 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_08545 e60041b812bf57789c7bbfcba01b69a0 339 Gene3D G3DSA:1.10.150.130 58 166 5.9E-13 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_08865 24cd448781277ce5a5560322690b2c97 356 SUPERFAMILY SSF51161 35 320 2.67E-71 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_08865 24cd448781277ce5a5560322690b2c97 356 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 10 328 2.1E-105 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Gene3D G3DSA:2.160.10.10 103 312 6.3E-67 T 11-10-2018 AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Gene3D G3DSA:3.40.1390.10 1 102 1.1E-30 T 11-10-2018 AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 28 92 3.7E-20 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 6.0E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 1.9E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 145 2.4E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_08865 24cd448781277ce5a5560322690b2c97 356 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 329 34.119 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Gene3D G3DSA:1.10.3170.10 161 378 2.7E-74 T 11-10-2018 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 468 8.4E-48 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Gene3D G3DSA:3.90.320.10 920 1236 2.1E-66 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Gene3D G3DSA:3.40.50.300 482 861 1.0E-68 T 11-10-2018 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Pfam PF12705 PD-(D/E)XK nuclease superfamily 991 1201 6.6E-5 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 2 1230 15.588 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 SUPERFAMILY SSF52980 921 1230 7.51E-56 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Gene3D G3DSA:1.10.486.10 608 754 1.0E-68 T 11-10-2018 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 SUPERFAMILY SSF52540 14 857 5.74E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Pfam PF13361 UvrD-like helicase C-terminal domain 477 855 7.1E-29 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_14500 03b2b04ce3c3851f83a39987b169ac06 1241 Gene3D G3DSA:3.40.50.300 13 468 2.7E-74 T 11-10-2018 AMD27_12995 6c9a638911c68bb27d6e77cc951f49cf 312 Pfam PF05704 Capsular polysaccharide synthesis protein 42 183 2.1E-20 T 11-10-2018 IPR008441 Capsular polysaccharide synthesis protein AMD27_12995 6c9a638911c68bb27d6e77cc951f49cf 312 Gene3D G3DSA:3.90.550.20 46 283 6.2E-10 T 11-10-2018 AMD27_12995 6c9a638911c68bb27d6e77cc951f49cf 312 SUPERFAMILY SSF53448 16 225 5.44E-17 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 Gene3D G3DSA:1.10.443.10 242 434 1.6E-26 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 Pfam PF13356 Arm DNA-binding domain 6 92 5.0E-11 T 11-10-2018 IPR025166 Integrase, DNA-binding domain AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 Pfam PF00589 Phage integrase family 246 419 8.9E-22 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 Gene3D G3DSA:3.30.160.390 4 112 2.7E-14 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 SUPERFAMILY SSF56349 144 432 4.41E-49 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_06235 c05c1f8d907c5a1b546d33ef24bf454e 448 Gene3D G3DSA:1.10.150.130 114 235 4.9E-11 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_08710 bcc9d9751450533e0713ed1d96471c71 407 Pfam PF00487 Fatty acid desaturase 131 340 5.1E-29 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMD27_07110 57ff272e79c587e6037a904f95a2107e 396 TIGRFAM TIGR00843 benE: benzoate transporter 10 384 1.0E-105 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMD27_07110 57ff272e79c587e6037a904f95a2107e 396 Pfam PF03594 Benzoate membrane transport protein 7 383 1.9E-121 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMD27_14160 971bc2a58459c3b688a2185605eba782 141 SUPERFAMILY SSF55811 3 124 1.1E-21 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_14160 971bc2a58459c3b688a2185605eba782 141 Gene3D G3DSA:3.90.79.10 1 139 1.4E-20 T 11-10-2018 AMD27_14160 971bc2a58459c3b688a2185605eba782 141 Pfam PF00293 NUDIX domain 6 110 2.8E-14 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_14160 971bc2a58459c3b688a2185605eba782 141 ProSitePatterns PS00893 Nudix box signature. 34 55 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_07855 37b5df3fa100575375ddf6449c51d7d2 169 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 15 169 2.4E-89 T 11-10-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0055114 AMD27_07855 37b5df3fa100575375ddf6449c51d7d2 169 Gene3D G3DSA:3.10.450.50 6 169 1.7E-45 T 11-10-2018 AMD27_07855 37b5df3fa100575375ddf6449c51d7d2 169 SUPERFAMILY SSF54427 10 169 1.71E-52 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_07855 37b5df3fa100575375ddf6449c51d7d2 169 Pfam PF00866 Ring hydroxylating beta subunit 22 161 9.7E-47 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 AMD27_01030 d25e839ec741ed3a1e0f5d8143608a96 86 SMART SM00899 1 82 5.7E-18 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMD27_01030 d25e839ec741ed3a1e0f5d8143608a96 86 Gene3D G3DSA:2.30.30.90 1 83 1.3E-23 T 11-10-2018 IPR038157 Ferrous iron transporter, core domain AMD27_01030 d25e839ec741ed3a1e0f5d8143608a96 86 SUPERFAMILY SSF50037 4 81 8.7E-14 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal AMD27_01030 d25e839ec741ed3a1e0f5d8143608a96 86 Pfam PF04023 FeoA domain 1 81 7.3E-16 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 21.822 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 SUPERFAMILY SSF69287 1 71 4.32E-14 T 11-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 SMART SM00988 2 66 3.4E-14 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 Pfam PF05194 UreE urease accessory protein, C-terminal domain 73 160 3.7E-27 T 11-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 Pfam PF02814 UreE urease accessory protein, N-terminal domain 6 64 1.6E-12 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 Gene3D G3DSA:3.30.70.790 73 144 4.7E-27 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 SUPERFAMILY SSF69737 73 139 4.71E-19 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 Gene3D G3DSA:2.60.260.20 1 71 1.3E-16 T 11-10-2018 AMD27_02125 80d4627d003135f71583bc6b2625caf8 161 PIRSF PIRSF036402 2 161 6.4E-38 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 PIRSF PIRSF016578 22 404 4.4E-36 T 11-10-2018 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Gene3D G3DSA:1.20.140.10 242 415 9.4E-56 T 11-10-2018 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 261 393 2.8E-24 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 SUPERFAMILY SSF56645 40 242 4.32E-44 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Gene3D G3DSA:1.10.540.10 35 140 4.8E-21 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Gene3D G3DSA:2.40.110.10 143 241 2.6E-29 T 11-10-2018 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 SUPERFAMILY SSF47203 248 416 3.87E-24 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 137 4.6E-9 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 28 417 8.8E-188 T 11-10-2018 IPR023922 Sulphate-starvation-induced SfnB AMD27_14315 1dd374a2827a832f61407ff9fd3d5d7d 418 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 149 234 4.1E-10 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 240 7.1E-58 T 11-10-2018 AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 Gene3D G3DSA:3.40.50.720 1 241 6.8E-75 T 11-10-2018 AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 241 3.5E-121 T 11-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 8.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 8.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 189 0.0015 T 11-10-2018 AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 SUPERFAMILY SSF51735 2 240 5.1E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_13350 5d6248197a69f1e1b50bc4633888e43d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.1E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 SUPERFAMILY SSF50249 5 68 1.96E-23 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 PIRSF PIRSF002599 1 69 3.5E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 Gene3D G3DSA:2.40.50.140 4 67 8.1E-28 T 11-10-2018 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 PRINTS PR00050 Cold shock protein signature 27 36 8.7E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 PRINTS PR00050 Cold shock protein signature 42 60 8.7E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 PRINTS PR00050 Cold shock protein signature 7 22 8.7E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 SMART SM00357 6 69 5.4E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 11-10-2018 IPR019844 Cold-shock conserved site AMD27_08680 05d53b61cc36ce6f4a7839e471412583 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 4.6E-28 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_07730 fadc73074139fe92d780e7b59fd93a60 405 Pfam PF07690 Major Facilitator Superfamily 24 282 5.4E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_07730 fadc73074139fe92d780e7b59fd93a60 405 SUPERFAMILY SSF103473 22 401 1.18E-39 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_07730 fadc73074139fe92d780e7b59fd93a60 405 Gene3D G3DSA:1.20.1250.20 16 198 3.5E-15 T 11-10-2018 AMD27_07730 fadc73074139fe92d780e7b59fd93a60 405 Gene3D G3DSA:1.20.1250.20 215 402 1.1E-19 T 11-10-2018 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 304 382 4.6E-8 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMD27_01045 03d62c28d2395b073540e921408daef0 448 SUPERFAMILY SSF51984 10 93 2.09E-16 T 11-10-2018 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 447 33.226 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Gene3D G3DSA:3.40.50.720 8 93 7.9E-22 T 11-10-2018 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Pfam PF08245 Mur ligase middle domain 110 282 1.2E-25 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Gene3D G3DSA:3.90.190.20 303 444 4.3E-42 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_01045 03d62c28d2395b073540e921408daef0 448 SUPERFAMILY SSF53244 302 447 5.95E-42 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_01045 03d62c28d2395b073540e921408daef0 448 SUPERFAMILY SSF53623 98 300 7.94E-52 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_01045 03d62c28d2395b073540e921408daef0 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 10 445 1.6E-117 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_01045 03d62c28d2395b073540e921408daef0 448 Gene3D G3DSA:3.40.1190.10 94 302 2.5E-60 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_13310 47647e0da751e592c674ddb7cda69978 272 Pfam PF14136 Domain of unknown function (DUF4303) 15 170 8.7E-13 T 11-10-2018 IPR025409 Protein of unknown function DUF4303 AMD27_05460 52c7740c0d89edfa22f19e1dc1a78690 93 SUPERFAMILY SSF46689 45 90 3.23E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05460 52c7740c0d89edfa22f19e1dc1a78690 93 Pfam PF03811 InsA N-terminal domain 5 36 3.1E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_05355 52c7740c0d89edfa22f19e1dc1a78690 93 SUPERFAMILY SSF46689 45 90 3.23E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05355 52c7740c0d89edfa22f19e1dc1a78690 93 Pfam PF03811 InsA N-terminal domain 5 36 3.1E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:2.40.30.170 49 59 9.9E-11 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:2.40.30.170 282 373 1.3E-17 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 186 395 8.3E-63 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:2.40.50.100 245 281 1.3E-17 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:2.40.50.100 61 94 9.9E-11 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 31 54 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 314 337 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 73 93 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 290 314 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 360 375 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 375 395 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 257 278 1.9E-38 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 SUPERFAMILY SSF111369 69 195 5.23E-7 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:1.10.287.470 95 123 9.9E-11 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Gene3D G3DSA:1.10.287.470 146 244 1.3E-17 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Pfam PF13533 Biotin-lipoyl like 67 99 2.1E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 Pfam PF13437 HlyD family secretion protein 245 356 4.6E-18 T 11-10-2018 AMD27_06130 333bd7b6cde8e27638fa7c58e115aeb3 395 ProSitePatterns PS00543 HlyD family secretion proteins signature. 360 382 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AMD27_09090 a6516a4de8f0d2334eb0fd11126a4f28 239 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 225 7.7E-69 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AMD27_09090 a6516a4de8f0d2334eb0fd11126a4f28 239 Pfam PF00149 Calcineurin-like phosphoesterase 3 197 2.8E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_09090 a6516a4de8f0d2334eb0fd11126a4f28 239 SUPERFAMILY SSF56300 2 215 2.42E-24 T 11-10-2018 AMD27_09090 a6516a4de8f0d2334eb0fd11126a4f28 239 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 239 86.565 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AMD27_12420 fa7104df3754a77a5877417802610cbe 405 SUPERFAMILY SSF103473 18 396 3.53E-54 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_12420 fa7104df3754a77a5877417802610cbe 405 Pfam PF07690 Major Facilitator Superfamily 32 339 1.3E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_12420 fa7104df3754a77a5877417802610cbe 405 Gene3D G3DSA:1.20.1250.20 26 398 3.0E-48 T 11-10-2018 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 274 1.7E-96 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 SUPERFAMILY SSF54211 134 277 1.21E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 297 3.2E-111 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 Gene3D G3DSA:3.30.1700.10 128 300 3.4E-62 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 Gene3D G3DSA:3.30.230.20 1 127 3.2E-42 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 42.476 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMD27_15300 cd5c258aa96bf5c7ceeae3d07cf2e7af 300 SUPERFAMILY SSF54211 3 125 4.32E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_14075 7373ae27d6e10a8ae4fb7041bddfce39 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 196 9.6E-72 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14075 7373ae27d6e10a8ae4fb7041bddfce39 200 Gene3D G3DSA:3.40.1370.10 4 199 2.8E-66 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14075 7373ae27d6e10a8ae4fb7041bddfce39 200 SUPERFAMILY SSF52166 7 196 3.14E-69 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14075 7373ae27d6e10a8ae4fb7041bddfce39 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 196 4.5E-62 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMD27_14075 7373ae27d6e10a8ae4fb7041bddfce39 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 2 200 32.878 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06690 14f182214ef59b27f71aee40ea6e6f09 331 SUPERFAMILY SSF46785 14 57 3.15E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_06690 14f182214ef59b27f71aee40ea6e6f09 331 Pfam PF13280 WYL domain 158 329 9.4E-23 T 11-10-2018 IPR026881 WYL domain AMD27_13415 61758caebea53d57417626fed29803b0 82 SUPERFAMILY SSF47336 3 79 7.98E-17 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_13415 61758caebea53d57417626fed29803b0 82 Gene3D G3DSA:1.10.1200.10 1 82 7.5E-16 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_13415 61758caebea53d57417626fed29803b0 82 Pfam PF00550 Phosphopantetheine attachment site 11 74 8.4E-11 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMD27_10405 97c3534ef786a8ae0778fc89082433ba 320 SUPERFAMILY SSF52540 51 303 2.73E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10405 97c3534ef786a8ae0778fc89082433ba 320 PIRSF PIRSF002849 1 319 6.0E-112 T 11-10-2018 AMD27_10405 97c3534ef786a8ae0778fc89082433ba 320 Gene3D G3DSA:1.10.8.300 221 319 5.6E-22 T 11-10-2018 AMD27_10405 97c3534ef786a8ae0778fc89082433ba 320 Gene3D G3DSA:3.40.50.300 43 206 1.0E-38 T 11-10-2018 AMD27_10405 97c3534ef786a8ae0778fc89082433ba 320 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 60 190 1.5E-57 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMD27_13905 7863e4d4768c8d9da70bd2b8f919d969 71 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 3 50 3.7E-17 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 AMD27_13905 7863e4d4768c8d9da70bd2b8f919d969 71 Pfam PF09526 Probable metal-binding protein (DUF2387) 3 53 3.5E-18 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 AMD27_07515 bb060696700c2da5e942d3320e3ceedb 181 Gene3D G3DSA:3.40.630.30 3 157 8.3E-20 T 11-10-2018 AMD27_07515 bb060696700c2da5e942d3320e3ceedb 181 Pfam PF13673 Acetyltransferase (GNAT) domain 72 157 1.6E-10 T 11-10-2018 IPR000182 GNAT domain AMD27_07515 bb060696700c2da5e942d3320e3ceedb 181 SUPERFAMILY SSF55729 5 161 4.36E-23 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_13425 91c66bf9fd710e22761e2b5a9d94b8ea 266 SMART SM00563 93 204 1.9E-12 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_13425 91c66bf9fd710e22761e2b5a9d94b8ea 266 Pfam PF01553 Acyltransferase 80 201 1.3E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_13425 91c66bf9fd710e22761e2b5a9d94b8ea 266 SUPERFAMILY SSF69593 54 259 3.79E-32 T 11-10-2018 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 PIRSF PIRSF006246 1 124 1.0E-46 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 SUPERFAMILY SSF50692 1 122 3.11E-45 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 Gene3D G3DSA:2.40.40.20 1 126 2.4E-50 T 11-10-2018 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 Pfam PF02261 Aspartate decarboxylase 1 114 4.7E-45 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 63.533 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 1.0E-59 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMD27_04460 7ad8b1922fc63cc816900b093b4c1e7e 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 5.1E-45 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMD27_13750 cc364306d6476eef2150f65415a19a0e 285 Gene3D G3DSA:3.40.50.150 1 285 2.7E-96 T 11-10-2018 AMD27_13750 cc364306d6476eef2150f65415a19a0e 285 SUPERFAMILY SSF53335 8 276 2.33E-80 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_13750 cc364306d6476eef2150f65415a19a0e 285 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 270 38.731 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMD27_13750 cc364306d6476eef2150f65415a19a0e 285 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 283 2.3E-67 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMD27_03790 ef71758d3dd72cd9ae2c7c5ca19ef2cb 121 SUPERFAMILY SSF52980 5 118 6.43E-15 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_03790 ef71758d3dd72cd9ae2c7c5ca19ef2cb 121 Pfam PF04480 Protein of unknown function (DUF559) 11 115 2.4E-28 T 11-10-2018 IPR007569 Protein of unknown function DUF559 AMD27_03790 ef71758d3dd72cd9ae2c7c5ca19ef2cb 121 Gene3D G3DSA:3.40.960.10 19 119 9.4E-29 T 11-10-2018 AMD27_00835 02dedc1473ecccc61f3709f1f133f8af 215 Pfam PF03641 Possible lysine decarboxylase 74 202 1.0E-42 T 11-10-2018 IPR031100 LOG family AMD27_00835 02dedc1473ecccc61f3709f1f133f8af 215 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 31 205 2.8E-58 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMD27_00835 02dedc1473ecccc61f3709f1f133f8af 215 SUPERFAMILY SSF102405 30 205 2.29E-58 T 11-10-2018 AMD27_00835 02dedc1473ecccc61f3709f1f133f8af 215 Gene3D G3DSA:3.40.50.450 23 214 1.7E-69 T 11-10-2018 AMD27_03615 48b1272d0c668d3ef825c682d6a7fbdc 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 9 149 7.1E-49 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMD27_03615 48b1272d0c668d3ef825c682d6a7fbdc 150 SUPERFAMILY SSF51283 3 149 3.66E-53 T 11-10-2018 IPR036157 dUTPase-like superfamily AMD27_03615 48b1272d0c668d3ef825c682d6a7fbdc 150 Gene3D G3DSA:2.70.40.10 1 150 6.6E-54 T 11-10-2018 IPR036157 dUTPase-like superfamily AMD27_03615 48b1272d0c668d3ef825c682d6a7fbdc 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 149 33.238 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMD27_03615 48b1272d0c668d3ef825c682d6a7fbdc 150 Pfam PF00692 dUTPase 15 148 2.2E-38 T 11-10-2018 IPR029054 dUTPase-like AMD27_10060 2677aacf7c0652b03160a27fef893323 512 PIRSF PIRSF000485 1 483 9.1E-162 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 4.9E-156 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.719 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 SUPERFAMILY SSF53271 250 485 5.11E-71 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_10060 2677aacf7c0652b03160a27fef893323 512 Pfam PF13522 Glutamine amidotransferase domain 65 195 1.2E-14 T 11-10-2018 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 Pfam PF00156 Phosphoribosyl transferase domain 276 394 6.5E-9 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 Gene3D G3DSA:3.40.50.2020 275 445 3.8E-148 T 11-10-2018 AMD27_10060 2677aacf7c0652b03160a27fef893323 512 SUPERFAMILY SSF56235 2 257 6.78E-69 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_10060 2677aacf7c0652b03160a27fef893323 512 Gene3D G3DSA:3.60.20.10 2 467 3.8E-148 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 SUPERFAMILY SSF51735 6 261 3.2E-70 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 Gene3D G3DSA:3.40.50.720 1 263 2.1E-72 T 11-10-2018 AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.1E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 Pfam PF00106 short chain dehydrogenase 8 202 3.4E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 6.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 6.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_03985 4991056776c38b6e02ed61b20cc64a00 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 6.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00615 c521160d47bd7a8fec9b413969393ab0 278 Pfam PF01297 Zinc-uptake complex component A periplasmic 24 242 1.9E-23 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMD27_00615 c521160d47bd7a8fec9b413969393ab0 278 Gene3D G3DSA:3.40.50.1980 23 173 8.3E-22 T 11-10-2018 AMD27_00615 c521160d47bd7a8fec9b413969393ab0 278 Gene3D G3DSA:3.40.50.1980 175 277 3.6E-9 T 11-10-2018 AMD27_00615 c521160d47bd7a8fec9b413969393ab0 278 SUPERFAMILY SSF53807 12 242 4.71E-38 T 11-10-2018 AMD27_14285 a4199ae128d74028af371120ae87d550 265 Gene3D G3DSA:3.40.50.300 1 263 4.4E-60 T 11-10-2018 AMD27_14285 a4199ae128d74028af371120ae87d550 265 Pfam PF00005 ABC transporter 26 187 1.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14285 a4199ae128d74028af371120ae87d550 265 SMART SM00382 35 236 6.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_14285 a4199ae128d74028af371120ae87d550 265 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 236 258 1.2E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMD27_14285 a4199ae128d74028af371120ae87d550 265 SUPERFAMILY SSF52540 10 258 1.28E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 12 247 8.8E-68 T 11-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 SMART SM00028 38 71 0.19 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 SMART SM00028 72 108 220.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 SMART SM00028 145 178 1.4E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 Pfam PF13431 Tetratricopeptide repeat 98 130 1.2E-5 T 11-10-2018 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 SUPERFAMILY SSF81901 29 203 7.85E-20 T 11-10-2018 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 Pfam PF13432 Tetratricopeptide repeat 44 83 0.0021 T 11-10-2018 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 Pfam PF13432 Tetratricopeptide repeat 150 207 5.7E-6 T 11-10-2018 AMD27_13465 097fbfea16eebb2100dc8a2f3db8dc12 267 Gene3D G3DSA:1.25.40.10 34 258 1.7E-41 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_15375 4600c647e766a8ca787a5587605feadb 257 Pfam PF13557 Putative MetA-pathway of phenol degradation 28 257 1.2E-13 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 SMART SM00922 144 241 5.6E-21 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 100 125 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 191 222 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 2 368 3.2E-177 T 11-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 125 2.0E-30 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 Gene3D G3DSA:3.20.20.120 118 353 6.5E-119 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 Pfam PF13378 Enolase C-terminal domain-like 148 361 2.0E-44 T 11-10-2018 IPR029065 Enolase C-terminal domain-like AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 SUPERFAMILY SSF51604 127 367 9.96E-65 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 Gene3D G3DSA:3.30.390.10 9 361 6.5E-119 T 11-10-2018 IPR029017 Enolase-like, N-terminal AMD27_07875 f9dca44a3828533b7037a976cd29909a 369 SUPERFAMILY SSF54826 3 126 9.14E-32 T 11-10-2018 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 Pfam PF01218 Coproporphyrinogen III oxidase 11 309 1.9E-119 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 Gene3D G3DSA:3.40.1500.10 1 315 2.5E-135 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PIRSF PIRSF000166 1 310 4.5E-119 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 173 197 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 SUPERFAMILY SSF102886 7 309 1.23E-124 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 55 76 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 132 154 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 269 295 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 97 121 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 241 268 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 169 198 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_14220 dba0b967c14fea055ac2995bf3a7439a 315 PRINTS PR00073 Coprogen oxidase signature 38 54 1.0E-74 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMD27_11320 f3261bb88b71134db681aa954fa52557 315 Pfam PF13737 Transposase DDE domain 22 130 1.9E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 Gene3D G3DSA:3.40.1080.10 257 396 1.1E-33 T 11-10-2018 AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 Gene3D G3DSA:3.40.1080.10 1 254 4.2E-62 T 11-10-2018 AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 SMART SM00882 3 237 1.8E-11 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 Pfam PF01144 Coenzyme A transferase 11 237 2.4E-14 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 SUPERFAMILY SSF100950 2 243 2.45E-47 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_15145 18ab467fa3d4837b48b0866e432cbf0c 396 SUPERFAMILY SSF100950 266 390 1.63E-25 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Pfam PF13604 AAA domain 129 327 2.1E-30 T 11-10-2018 AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 11 583 39.463 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Gene3D G3DSA:2.30.30.940 444 514 2.6E-83 T 11-10-2018 AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Gene3D G3DSA:3.40.50.300 122 578 2.6E-83 T 11-10-2018 AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Pfam PF13538 UvrD-like helicase C-terminal domain 514 558 3.7E-12 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 Gene3D G3DSA:3.40.50.300 307 576 2.6E-83 T 11-10-2018 AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 SUPERFAMILY SSF52540 129 566 9.77E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14495 55de1e821fd9cd21871e6010bf70a05c 593 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 59 584 1.3E-119 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AMD27_02560 d048325e2bfb5cbb9829e19bb01a326c 141 Pfam PF01042 Endoribonuclease L-PSP 34 139 2.3E-14 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_02560 d048325e2bfb5cbb9829e19bb01a326c 141 SUPERFAMILY SSF55298 10 140 3.46E-20 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_02560 d048325e2bfb5cbb9829e19bb01a326c 141 Gene3D G3DSA:3.30.1330.40 9 141 1.7E-20 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_05645 0505491033e2f61199e249975edb0873 154 Pfam PF03400 IS1 transposase 15 139 1.4E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_08125 a06701ece8c86df6db390f7c0f061246 200 Gene3D G3DSA:3.40.470.10 6 197 4.8E-18 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_08125 a06701ece8c86df6db390f7c0f061246 200 SUPERFAMILY SSF52141 10 191 7.19E-20 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMD27_12035 980a815d892654af9a4163707f247bcc 259 Pfam PF02698 DUF218 domain 103 248 1.3E-31 T 11-10-2018 IPR003848 Domain of unknown function DUF218 AMD27_12035 980a815d892654af9a4163707f247bcc 259 Gene3D G3DSA:3.40.50.620 147 221 1.1E-7 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_10095 47f1a6e96e3edcd0df6e05d7617c0c8c 192 Pfam PF00881 Nitroreductase family 14 168 1.3E-20 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMD27_10095 47f1a6e96e3edcd0df6e05d7617c0c8c 192 SUPERFAMILY SSF55469 6 189 1.96E-30 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_10095 47f1a6e96e3edcd0df6e05d7617c0c8c 192 Gene3D G3DSA:3.40.109.10 8 189 3.0E-34 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_10095 47f1a6e96e3edcd0df6e05d7617c0c8c 192 PIRSF PIRSF000232 4 192 2.7E-61 T 11-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AMD27_15850 91911b47a131a657189794e943d7de2e 324 SUPERFAMILY SSF53850 37 266 6.25E-49 T 11-10-2018 AMD27_15850 91911b47a131a657189794e943d7de2e 324 Pfam PF09084 NMT1/THI5 like 62 257 2.6E-19 T 11-10-2018 IPR015168 SsuA/THI5-like AMD27_15850 91911b47a131a657189794e943d7de2e 324 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 49 318 2.9E-69 T 11-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AMD27_15850 91911b47a131a657189794e943d7de2e 324 Gene3D G3DSA:3.40.190.10 117 216 6.4E-105 T 11-10-2018 AMD27_15850 91911b47a131a657189794e943d7de2e 324 Gene3D G3DSA:3.40.190.10 38 311 6.4E-105 T 11-10-2018 AMD27_15850 91911b47a131a657189794e943d7de2e 324 Gene3D G3DSA:1.10.8.450 248 280 6.4E-105 T 11-10-2018 AMD27_15850 91911b47a131a657189794e943d7de2e 324 SMART SM00062 37 253 1.7E-17 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_13380 7ee31f4e793f9b313e6c79d38ced78a6 209 Gene3D G3DSA:2.50.20.10 27 207 4.0E-22 T 11-10-2018 AMD27_13380 7ee31f4e793f9b313e6c79d38ced78a6 209 SUPERFAMILY SSF89392 32 193 1.96E-15 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMD27_13380 7ee31f4e793f9b313e6c79d38ced78a6 209 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 42 194 6.8E-11 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMD27_10440 2fb38738f649bc888be3fcbc86dcccbc 731 SMART SM00052 480 726 9.0E-6 T 11-10-2018 IPR001633 EAL domain AMD27_10440 2fb38738f649bc888be3fcbc86dcccbc 731 Pfam PF00563 EAL domain 486 720 3.2E-21 T 11-10-2018 IPR001633 EAL domain AMD27_10440 2fb38738f649bc888be3fcbc86dcccbc 731 Gene3D G3DSA:3.20.20.450 484 729 1.3E-26 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_10440 2fb38738f649bc888be3fcbc86dcccbc 731 SUPERFAMILY SSF141868 486 720 6.93E-25 T 11-10-2018 IPR035919 EAL domain superfamily AMD27_09935 b381d898b8ef20a6d739922a9f53d889 154 Pfam PF13359 DDE superfamily endonuclease 8 134 4.8E-20 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_08165 7b0c9110198d1b7ac86f05372ff77b2a 184 ProSitePatterns PS01284 Thermonuclease family signature 2. 111 121 - T 11-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 AMD27_08165 7b0c9110198d1b7ac86f05372ff77b2a 184 Pfam PF00565 Staphylococcal nuclease homologue 71 169 4.4E-27 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMD27_08165 7b0c9110198d1b7ac86f05372ff77b2a 184 SMART SM00318 43 170 8.4E-34 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMD27_08165 7b0c9110198d1b7ac86f05372ff77b2a 184 Gene3D G3DSA:2.40.50.90 39 173 4.5E-30 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily AMD27_08165 7b0c9110198d1b7ac86f05372ff77b2a 184 SUPERFAMILY SSF50199 39 174 3.4E-35 T 11-10-2018 AMD27_01305 9c7565305f4aed3da55741122d4ab94a 233 Gene3D G3DSA:3.40.30.10 1 207 5.0E-69 T 11-10-2018 AMD27_01305 9c7565305f4aed3da55741122d4ab94a 233 Pfam PF01323 DSBA-like thioredoxin domain 2 203 1.9E-42 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_01305 9c7565305f4aed3da55741122d4ab94a 233 SUPERFAMILY SSF52833 1 208 1.17E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 Gene3D G3DSA:2.20.200.10 108 356 5.0E-105 T 11-10-2018 AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 Pfam PF02321 Outer membrane efflux protein 70 256 1.4E-18 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 Pfam PF02321 Outer membrane efflux protein 283 465 1.6E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 466 1.9E-87 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 Gene3D G3DSA:1.20.1600.10 60 466 5.0E-105 T 11-10-2018 AMD27_13560 4f85f77d0ea6cd1dbcea9f7d60471d86 473 SUPERFAMILY SSF56954 2 467 1.31E-90 T 11-10-2018 AMD27_09765 407a013335e46735b5f67b5608224fb7 407 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 406 24.486 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_09765 407a013335e46735b5f67b5608224fb7 407 Pfam PF03616 Sodium/glutamate symporter 4 375 4.4E-138 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_09765 407a013335e46735b5f67b5608224fb7 407 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 4 404 1.3E-147 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_07745 f4a0ff60d65ffb8652cf707878c83702 330 Gene3D G3DSA:3.40.190.10 95 210 3.7E-79 T 11-10-2018 AMD27_07745 f4a0ff60d65ffb8652cf707878c83702 330 SUPERFAMILY SSF53850 5 242 3.68E-19 T 11-10-2018 AMD27_07745 f4a0ff60d65ffb8652cf707878c83702 330 Gene3D G3DSA:3.40.190.10 11 325 3.7E-79 T 11-10-2018 AMD27_07745 f4a0ff60d65ffb8652cf707878c83702 330 Pfam PF13379 NMT1-like family 4 243 3.8E-61 T 11-10-2018 AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 SUPERFAMILY SSF100950 2 229 3.63E-89 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 1.1E-79 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 SMART SM00882 6 218 1.2E-92 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 19 34 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 Gene3D G3DSA:3.40.1080.10 1 228 1.4E-97 T 11-10-2018 AMD27_07605 4afbb9613f30edff70bd0b579eb23588 234 Pfam PF01144 Coenzyme A transferase 8 218 1.0E-79 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_12650 2c03f19de046a79b06891ecd12bdea76 422 Pfam PF11876 Protein of unknown function (DUF3396) 198 349 6.1E-9 T 11-10-2018 IPR021815 Protein of unknown function DUF3396 AMD27_12600 daae6805fb92a46057a1c61ce2a57f00 270 Pfam PF01925 Sulfite exporter TauE/SafE 7 259 3.7E-50 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_13785 6e786f3108eb41a4a0111c75ed9a3b9b 652 SUPERFAMILY SSF53955 485 644 3.17E-43 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_13785 6e786f3108eb41a4a0111c75ed9a3b9b 652 SUPERFAMILY SSF48435 31 482 5.62E-82 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMD27_13785 6e786f3108eb41a4a0111c75ed9a3b9b 652 Gene3D G3DSA:1.10.530.10 480 643 1.9E-41 T 11-10-2018 AMD27_13785 6e786f3108eb41a4a0111c75ed9a3b9b 652 Gene3D G3DSA:1.25.20.10 29 388 1.4E-52 T 11-10-2018 AMD27_13785 6e786f3108eb41a4a0111c75ed9a3b9b 652 Pfam PF01464 Transglycosylase SLT domain 495 597 4.3E-22 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_08415 be4045630ccd7d1c0883cda6aaa20926 64 Pfam PF02609 Exonuclease VII small subunit 8 59 7.6E-6 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMD27_08415 be4045630ccd7d1c0883cda6aaa20926 64 SUPERFAMILY SSF116842 2 59 3.92E-5 T 11-10-2018 AMD27_10145 a7014f96abe9fe81d9863f6d87a327ed 194 Gene3D G3DSA:3.40.50.360 1 193 2.0E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_10145 a7014f96abe9fe81d9863f6d87a327ed 194 SUPERFAMILY SSF52218 1 191 5.45E-38 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_10145 a7014f96abe9fe81d9863f6d87a327ed 194 Pfam PF02525 Flavodoxin-like fold 3 188 8.8E-34 T 11-10-2018 IPR003680 Flavodoxin-like fold AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 PIRSF PIRSF006485 1 440 1.4E-173 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 SUPERFAMILY SSF52540 4 166 1.86E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 352 432 5.1E-26 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Gene3D G3DSA:3.40.50.300 172 349 5.0E-48 T 11-10-2018 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 432 3.5E-177 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Gene3D G3DSA:3.40.50.300 1 162 6.4E-44 T 11-10-2018 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Pfam PF01926 50S ribosome-binding GTPase 179 296 1.9E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Pfam PF01926 50S ribosome-binding GTPase 5 119 5.5E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 178 309 3.4E-24 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 8.1E-22 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 SUPERFAMILY SSF52540 137 438 4.56E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Hamap MF_00195 GTPase Der [der]. 2 435 38.095 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.1E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 1.1E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 AMD27_13435 9fe5794ed61b9d6d6006607befb1a149 469 Gene3D G3DSA:3.30.300.20 352 434 6.7E-20 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_05020 167e207530d583e7b834db508606230e 225 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_05020 167e207530d583e7b834db508606230e 225 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 223 4.3E-98 T 11-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 AMD27_05020 167e207530d583e7b834db508606230e 225 Pfam PF00005 ABC transporter 26 174 1.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_05020 167e207530d583e7b834db508606230e 225 SMART SM00382 34 223 3.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_05020 167e207530d583e7b834db508606230e 225 SUPERFAMILY SSF52540 5 224 1.43E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05020 167e207530d583e7b834db508606230e 225 Gene3D G3DSA:3.40.50.300 3 225 3.2E-68 T 11-10-2018 AMD27_00415 d9b6372413c5948883eee91f37a03fe2 201 Gene3D G3DSA:2.160.10.10 14 200 2.9E-36 T 11-10-2018 AMD27_00415 d9b6372413c5948883eee91f37a03fe2 201 SUPERFAMILY SSF51161 71 196 1.66E-30 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_00415 d9b6372413c5948883eee91f37a03fe2 201 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 144 172 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMD27_00415 d9b6372413c5948883eee91f37a03fe2 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 136 169 1.4E-9 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Gene3D G3DSA:2.40.340.10 340 406 8.9E-101 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 SUPERFAMILY SSF53218 186 335 1.7E-29 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Gene3D G3DSA:3.90.105.10 33 183 8.9E-101 T 11-10-2018 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Pfam PF00994 Probable molybdopterin binding domain 189 325 4.1E-24 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 SUPERFAMILY SSF63867 340 410 1.13E-11 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 SMART SM00852 189 331 1.3E-26 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Gene3D G3DSA:3.40.980.10 184 339 8.9E-101 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 SUPERFAMILY SSF63882 13 184 1.44E-41 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 176 3.8E-30 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 324 5.2E-25 T 11-10-2018 IPR001453 MoaB/Mog domain AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Pfam PF03454 MoeA C-terminal region (domain IV) 344 408 3.0E-11 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07800 7f371961f6e9f07260070a15cf6f0d0e 413 Gene3D G3DSA:2.170.190.11 57 150 8.9E-101 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 193 363 1.6E-32 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 Pfam PF13740 ACT domain 3 79 7.6E-22 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 SUPERFAMILY SSF56784 189 396 1.17E-51 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 SUPERFAMILY SSF55021 1 82 4.08E-9 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 Gene3D G3DSA:3.40.50.1000 112 397 1.1E-83 T 11-10-2018 IPR023214 HAD superfamily AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 Gene3D G3DSA:3.30.70.260 2 83 8.2E-9 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 178 396 1.2E-80 T 11-10-2018 AMD27_15600 df88ad2e9946ed1d016f185fa33b0084 406 Pfam PF12710 haloacid dehalogenase-like hydrolase 194 361 9.8E-23 T 11-10-2018 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 25 253 8.4E-78 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 363 1.6E-23 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 SMART SM00936 273 363 2.2E-32 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 Gene3D G3DSA:3.40.710.10 17 271 1.2E-82 T 11-10-2018 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 Gene3D G3DSA:2.60.410.10 273 363 2.1E-29 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 SUPERFAMILY SSF69189 273 365 1.57E-24 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 SUPERFAMILY SSF56601 4 273 2.33E-76 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 57 68 6.9E-16 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 6.9E-16 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_10505 033ed2f534650d20480a48bf6b66d15d 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 6.9E-16 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_02570 5e2c76bf970ac4605e61aaefe34c77ba 308 SUPERFAMILY SSF103481 47 151 2.48E-13 T 11-10-2018 AMD27_02570 5e2c76bf970ac4605e61aaefe34c77ba 308 SUPERFAMILY SSF103481 221 304 7.06E-14 T 11-10-2018 AMD27_02570 5e2c76bf970ac4605e61aaefe34c77ba 308 Pfam PF00892 EamA-like transporter family 10 147 1.4E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_02570 5e2c76bf970ac4605e61aaefe34c77ba 308 Pfam PF00892 EamA-like transporter family 162 300 2.0E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 91 3.4E-11 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 PRINTS PR00355 Adrenodoxin signature 42 52 4.3E-8 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 PRINTS PR00355 Adrenodoxin signature 60 74 4.3E-8 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 PRINTS PR00355 Adrenodoxin signature 83 91 4.3E-8 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 SUPERFAMILY SSF54292 6 107 6.85E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 Gene3D G3DSA:3.10.20.30 1 112 1.9E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_08770 4f5e6e03a0478d9f53cfdc65f9ee7670 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 1.2E-50 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 AMD27_08800 a1dbac9d9720b733a4c96585429c5896 170 Gene3D G3DSA:3.50.30.40 4 169 3.6E-61 T 11-10-2018 AMD27_08800 a1dbac9d9720b733a4c96585429c5896 170 TIGRFAM TIGR01935 NOT-MenG: RraA family 9 162 3.5E-60 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AMD27_08800 a1dbac9d9720b733a4c96585429c5896 170 SUPERFAMILY SSF89562 27 168 3.01E-44 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMD27_08800 a1dbac9d9720b733a4c96585429c5896 170 Pfam PF03737 Aldolase/RraA 8 162 1.6E-44 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMD27_06210 25816e529da75fc9f5099a29dcf8f3bc 520 SUPERFAMILY SSF51905 7 427 2.38E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06210 25816e529da75fc9f5099a29dcf8f3bc 520 PIRSF PIRSF011396 1 520 5.2E-167 T 11-10-2018 IPR033856 Flavin-dependent tryptophan halogenase AMD27_06210 25816e529da75fc9f5099a29dcf8f3bc 520 Pfam PF04820 Tryptophan halogenase 8 478 2.2E-162 T 11-10-2018 IPR006905 Flavin-dependent halogenase AMD27_06210 25816e529da75fc9f5099a29dcf8f3bc 520 Gene3D G3DSA:3.50.50.60 3 519 8.1E-194 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 830 846 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 786 795 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 762 781 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 799 810 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 698 705 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 853 861 1.6E-9 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Pfam PF03929 PepSY-associated TM region 7 414 5.5E-66 T 11-10-2018 IPR005625 PepSY-associated TM protein AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00369 Flavodoxin signature 520 530 2.9E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00369 Flavodoxin signature 441 454 2.9E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 PRINTS PR00369 Flavodoxin signature 489 500 2.9E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 SUPERFAMILY SSF52218 431 582 1.22E-34 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Pfam PF00175 Oxidoreductase NAD-binding domain 764 868 6.8E-12 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Gene3D G3DSA:3.40.50.360 425 590 3.1E-35 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 SUPERFAMILY SSF63380 596 753 4.08E-18 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Gene3D G3DSA:1.20.990.10 594 724 3.3E-6 T 11-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 SUPERFAMILY SSF52343 757 894 3.67E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Pfam PF00258 Flavodoxin 442 573 5.5E-24 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AMD27_12030 12faedb1d88a54424939bfbe68e8f7b8 894 Gene3D G3DSA:3.40.50.80 752 894 2.8E-38 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMD27_10765 43b9e00c9b62c4ef9ba71b0466c26dfd 404 Gene3D G3DSA:1.20.1250.20 11 401 1.3E-45 T 11-10-2018 AMD27_10765 43b9e00c9b62c4ef9ba71b0466c26dfd 404 Pfam PF07690 Major Facilitator Superfamily 20 361 7.1E-34 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_10765 43b9e00c9b62c4ef9ba71b0466c26dfd 404 SUPERFAMILY SSF103473 5 397 7.19E-56 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_11980 2d843eb249bdd5bf8996e7cfda9cdc55 171 Pfam PF03061 Thioesterase superfamily 32 103 7.8E-19 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_11980 2d843eb249bdd5bf8996e7cfda9cdc55 171 Gene3D G3DSA:3.10.129.10 9 161 1.0E-56 T 11-10-2018 AMD27_11980 2d843eb249bdd5bf8996e7cfda9cdc55 171 SUPERFAMILY SSF54637 12 157 7.63E-44 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_11980 2d843eb249bdd5bf8996e7cfda9cdc55 171 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 9 102 7.1E-10 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 SMART SM00825 Beta-ketoacyl synthase 4 406 8.4E-13 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 362 1.3E-29 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 SUPERFAMILY SSF53901 215 404 2.73E-60 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 SUPERFAMILY SSF53901 2 253 3.84E-54 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 Gene3D G3DSA:3.40.47.10 260 406 4.1E-45 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 Gene3D G3DSA:3.40.47.10 1 254 3.1E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMD27_13345 c92a668c1e9a014cc6b042536057aa02 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 246 2.5E-40 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMD27_04350 73a59ef42501c0f258de2dfcbd2d3327 463 PIRSF PIRSF006060 2 459 5.1E-63 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_04350 73a59ef42501c0f258de2dfcbd2d3327 463 Gene3D G3DSA:1.20.1740.10 12 458 4.4E-72 T 11-10-2018 AMD27_04350 73a59ef42501c0f258de2dfcbd2d3327 463 Pfam PF00324 Amino acid permease 21 384 2.3E-36 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 Gene3D G3DSA:3.30.70.260 258 352 6.2E-8 T 11-10-2018 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 Pfam PF00005 ABC transporter 34 182 5.4E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 Pfam PF09383 NIL domain 277 348 1.1E-9 T 11-10-2018 IPR018449 NIL domain AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 SMART SM00930 274 349 4.3E-5 T 11-10-2018 IPR018449 NIL domain AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 Gene3D G3DSA:3.40.50.300 13 257 7.4E-73 T 11-10-2018 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 SUPERFAMILY SSF55021 273 352 7.44E-10 T 11-10-2018 AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 SMART SM00382 43 231 4.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_09515 7a78db0e57fc3365f3ffde7b9223cf96 356 SUPERFAMILY SSF52540 15 252 2.87E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 SUPERFAMILY SSF54909 1 95 2.52E-38 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.3E-47 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 6.0E-40 T 11-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 Gene3D G3DSA:3.30.70.1060 1 94 1.3E-35 T 11-10-2018 AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 PIRSF PIRSF001486 1 94 2.4E-48 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMD27_07870 1be1b711013ddacc90cea7bcf9fdfc57 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 1.0E-23 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 Gene3D G3DSA:3.40.30.10 39 143 9.9E-32 T 11-10-2018 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 Pfam PF00085 Thioredoxin 39 137 4.6E-29 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 Gene3D G3DSA:2.20.28.140 1 33 4.1E-13 T 11-10-2018 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 PRINTS PR00421 Thioredoxin family signature 56 64 1.8E-7 T 11-10-2018 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 PRINTS PR00421 Thioredoxin family signature 64 73 1.8E-7 T 11-10-2018 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 PRINTS PR00421 Thioredoxin family signature 103 114 1.8E-7 T 11-10-2018 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 SUPERFAMILY SSF52833 24 141 4.55E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 PIRSF PIRSF000077 35 139 2.0E-30 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMD27_13690 226d037807419eaa4cee47a0f5d69045 143 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 138 1.4E-31 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 3 24 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 534 557 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 192 212 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 250 268 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 283 298 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 498 520 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 451 474 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR00701 60kDa inner membrane protein signature 360 380 6.9E-72 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 Pfam PF02096 60Kd inner membrane protein 390 568 1.2E-60 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR01900 YidC translocation/secretion protein signature 504 519 3.3E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR01900 YidC translocation/secretion protein signature 523 547 3.3E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 PRINTS PR01900 YidC translocation/secretion protein signature 375 391 3.3E-25 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 570 23.119 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 389 568 2.9E-70 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 Pfam PF14849 YidC periplasmic domain 86 377 6.2E-74 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 388 1.3E-105 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal AMD27_16160 c3afe98ac50633c588f36633888fef0a 585 Gene3D G3DSA:2.70.98.90 82 369 2.7E-100 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily AMD27_15615 9c7e1b1d1eb9c867783aa2d22c99f28a 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 152 2.2E-52 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15615 9c7e1b1d1eb9c867783aa2d22c99f28a 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 153 1.0E-55 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15615 9c7e1b1d1eb9c867783aa2d22c99f28a 156 Gene3D G3DSA:3.40.50.960 3 156 4.6E-59 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15615 9c7e1b1d1eb9c867783aa2d22c99f28a 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 11 156 30.845 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_15615 9c7e1b1d1eb9c867783aa2d22c99f28a 156 SUPERFAMILY SSF52121 11 156 8.11E-60 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 SUPERFAMILY SSF55620 172 255 7.04E-11 T 11-10-2018 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 Gene3D G3DSA:3.30.1130.10 14 130 2.2E-39 T 11-10-2018 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 TIGRFAM TIGR03138 QueF: queuine synthase 3 270 9.3E-112 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 Pfam PF14489 QueF-like protein 183 254 4.0E-21 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 Gene3D G3DSA:3.30.1130.10 132 270 3.4E-54 T 11-10-2018 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 PIRSF PIRSF004750 1 270 4.9E-109 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 122 3.0E-38 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMD27_10705 c0cd7b9aae213dc83028e50bb57d2a22 270 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 270 116.136 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 45 327 1.2E-75 T 11-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 Gene3D G3DSA:1.10.8.450 254 288 3.9E-102 T 11-10-2018 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 Gene3D G3DSA:3.40.190.10 123 222 3.9E-102 T 11-10-2018 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 Gene3D G3DSA:3.40.190.10 45 319 3.9E-102 T 11-10-2018 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 SUPERFAMILY SSF53850 46 269 2.42E-48 T 11-10-2018 AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 SMART SM00062 44 259 6.6E-26 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_15855 8441d652b409f04d20b6e7c60df0a145 332 Pfam PF09084 NMT1/THI5 like 83 260 9.6E-16 T 11-10-2018 IPR015168 SsuA/THI5-like AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 Gene3D G3DSA:3.40.50.2020 7 302 5.1E-130 T 11-10-2018 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 314 6.2E-121 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 SUPERFAMILY SSF53271 69 306 1.78E-64 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 2.0E-49 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 198 313 9.5E-29 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 SMART SM01400 4 121 1.9E-77 T 11-10-2018 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 48.18 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMD27_04475 447ea811eaa0800a8877bd84bb9dc59a 317 Gene3D G3DSA:3.40.50.2020 148 290 5.1E-130 T 11-10-2018 AMD27_16100 85ca0c94d3aa9255773b4bb5c18916c7 95 Gene3D G3DSA:3.40.630.30 3 94 3.7E-25 T 11-10-2018 AMD27_16100 85ca0c94d3aa9255773b4bb5c18916c7 95 Pfam PF14542 GCN5-related N-acetyl-transferase 15 92 1.7E-22 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMD27_16100 85ca0c94d3aa9255773b4bb5c18916c7 95 SUPERFAMILY SSF55729 4 93 3.12E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 31 1.7E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 SUPERFAMILY SSF54523 12 135 2.04E-13 T 11-10-2018 AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 31 1.4E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 Gene3D G3DSA:3.30.700.10 12 155 2.0E-9 T 11-10-2018 AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 22 36 5.3E-11 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 7 21 5.3E-11 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMD27_09625 e99ced7f21273ee2f416c6494782b119 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 160 175 5.3E-11 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 184 1.5E-34 T 11-10-2018 AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 SUPERFAMILY SSF56784 1 221 7.05E-55 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 184 1.1E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 Gene3D G3DSA:1.10.150.240 16 84 7.9E-51 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 Gene3D G3DSA:3.40.50.1000 4 193 7.9E-51 T 11-10-2018 IPR023214 HAD superfamily AMD27_00265 605ead2ab6490a25110973db3cf60a45 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 87 179 1.8E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_14070 f1585fda09e1d85ff27b3df5f0998e7f 106 Pfam PF00276 Ribosomal protein L23 9 93 2.6E-29 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMD27_14070 f1585fda09e1d85ff27b3df5f0998e7f 106 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 20.763 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMD27_14070 f1585fda09e1d85ff27b3df5f0998e7f 106 SUPERFAMILY SSF54189 2 91 2.52E-30 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14070 f1585fda09e1d85ff27b3df5f0998e7f 106 Gene3D G3DSA:3.30.70.330 1 97 1.5E-32 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMD27_01550 86d5182920b394950e499a2eafd16804 117 SUPERFAMILY SSF54523 7 55 1.2E-11 T 11-10-2018 AMD27_01550 86d5182920b394950e499a2eafd16804 117 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 3.5E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01550 86d5182920b394950e499a2eafd16804 117 Gene3D G3DSA:3.30.700.10 7 115 4.0E-13 T 11-10-2018 AMD27_01550 86d5182920b394950e499a2eafd16804 117 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 8.2E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_14920 8b7867547d9734ae558bb82fd0413afe 297 Gene3D G3DSA:3.40.50.150 32 284 9.2E-26 T 11-10-2018 AMD27_14920 8b7867547d9734ae558bb82fd0413afe 297 SUPERFAMILY SSF53335 32 283 5.09E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14920 8b7867547d9734ae558bb82fd0413afe 297 Pfam PF13489 Methyltransferase domain 46 213 8.8E-11 T 11-10-2018 AMD27_10715 25461a36b04cfc895deed1a11cde83a3 380 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 338 362 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_10715 25461a36b04cfc895deed1a11cde83a3 380 Pfam PF01098 Cell cycle protein 37 379 4.5E-103 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_10715 25461a36b04cfc895deed1a11cde83a3 380 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 27 380 26.723 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_10715 25461a36b04cfc895deed1a11cde83a3 380 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 33 380 1.6E-127 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 SMART SM00448 2 112 1.4E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 Pfam PF00072 Response regulator receiver domain 4 113 4.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 Gene3D G3DSA:3.40.50.2300 1 128 7.4E-39 T 11-10-2018 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 SUPERFAMILY SSF46894 131 225 1.08E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 SUPERFAMILY SSF52172 1 125 1.31E-42 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 223 2.7E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 SMART SM00862 144 223 1.0E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_12900 226bb9b8e421226736d237fdddfa9b8c 228 Gene3D G3DSA:1.10.10.10 129 225 1.1E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 SUPERFAMILY SSF50022 14 171 4.19E-44 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 203 395 8.9E-18 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 95 118 - T 11-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 196 218 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 155 181 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 4.5E-48 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 Pfam PF00355 Rieske [2Fe-2S] domain 52 135 3.4E-22 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 SUPERFAMILY SSF55961 171 453 1.49E-66 T 11-10-2018 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 Gene3D G3DSA:2.102.10.10 52 179 4.8E-110 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 15 447 2.4E-272 T 11-10-2018 IPR017639 Benzoate 1,2-dioxygenase, large subunit AMD27_07860 17f13f084e420f1932fb80f247ec80b9 465 Gene3D G3DSA:3.90.380.10 30 443 4.8E-110 T 11-10-2018 AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 SUPERFAMILY SSF54197 1 136 1.25E-37 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 Gene3D G3DSA:3.30.428.10 1 137 8.3E-37 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 PRINTS PR00332 Histidine triad family signature 29 47 9.2E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 PRINTS PR00332 Histidine triad family signature 96 106 9.2E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 PRINTS PR00332 Histidine triad family signature 8 24 9.2E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_07400 19c4e664aa4cb3cdf17f75daf16b252f 137 Pfam PF01230 HIT domain 15 109 2.6E-26 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_15800 f9dc2fc32839fb0dc3da9ef798ee04c0 184 SUPERFAMILY SSF48150 4 182 2.59E-68 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMD27_15800 f9dc2fc32839fb0dc3da9ef798ee04c0 184 Gene3D G3DSA:1.10.340.30 3 184 4.1E-69 T 11-10-2018 AMD27_15800 f9dc2fc32839fb0dc3da9ef798ee04c0 184 Pfam PF03352 Methyladenine glycosylase 8 183 1.2E-67 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMD27_15740 b00132e04cfcd28661125e6fe32a49fd 225 SUPERFAMILY SSF52499 5 210 1.57E-49 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_15740 b00132e04cfcd28661125e6fe32a49fd 225 Pfam PF00857 Isochorismatase family 7 200 1.8E-31 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMD27_15740 b00132e04cfcd28661125e6fe32a49fd 225 Gene3D G3DSA:3.40.50.850 3 209 2.9E-77 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 Gene3D G3DSA:4.10.910.10 72 118 3.8E-27 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 SUPERFAMILY SSF46946 2 114 6.67E-45 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 Gene3D G3DSA:1.10.8.50 1 71 1.8E-25 T 11-10-2018 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.94 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 6.9E-53 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 PIRSF PIRSF002134 1 118 6.6E-40 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 Pfam PF00416 Ribosomal protein S13/S18 3 62 9.1E-14 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13970 a32fa2d71706aaa622043ad96979be32 118 Pfam PF00416 Ribosomal protein S13/S18 65 108 9.7E-17 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_03895 42dca490261c9834bbf70959d6348954 613 Pfam PF06276 Ferric iron reductase FhuF-like transporter 424 595 4.5E-33 T 11-10-2018 IPR022770 Ferric iron reductase FhuF domain AMD27_03895 42dca490261c9834bbf70959d6348954 613 Gene3D G3DSA:1.10.510.40 394 612 8.5E-61 T 11-10-2018 AMD27_03895 42dca490261c9834bbf70959d6348954 613 Pfam PF04183 IucA / IucC family 158 402 4.9E-67 T 11-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 5 163 27.756 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 7.8E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 14 137 7.3E-48 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 SUPERFAMILY SSF54862 40 160 1.46E-27 T 11-10-2018 AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 Gene3D G3DSA:3.30.70.3270 31 174 5.1E-41 T 11-10-2018 AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_12340 12ad054d59951fd441d41acf31c91c3c 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 Gene3D G3DSA:3.40.30.10 479 608 1.1E-23 T 11-10-2018 AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 Pfam PF11412 Disulphide bond corrector protein DsbC 11 118 2.3E-26 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 ProSitePatterns PS00194 Thioredoxin family active site. 514 532 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 213 414 2.0E-15 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 Pfam PF13899 Thioredoxin-like 499 579 2.2E-8 T 11-10-2018 AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 SUPERFAMILY SSF52833 495 602 1.84E-15 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 SUPERFAMILY SSF74863 8 116 4.18E-28 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMD27_07580 0fe755aa5a3376d18266e15039f533ea 609 Gene3D G3DSA:2.60.40.1250 3 131 5.1E-35 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 SMART SM00450 12 127 3.5E-13 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 SMART SM00450 154 273 8.7E-17 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 Gene3D G3DSA:3.40.250.10 4 141 2.9E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 Gene3D G3DSA:3.40.250.10 151 275 1.8E-27 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 SUPERFAMILY SSF52821 6 132 2.88E-27 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 Pfam PF00581 Rhodanese-like domain 14 122 5.4E-15 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 Pfam PF00581 Rhodanese-like domain 158 268 3.3E-14 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_15560 b47566e1eac75bc8198be07665d86c90 282 SUPERFAMILY SSF52821 151 280 8.64E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_05105 c33d568b6b279a4feacba3205f1efd46 235 Pfam PF00308 Bacterial dnaA protein 37 189 1.1E-12 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMD27_05105 c33d568b6b279a4feacba3205f1efd46 235 Gene3D G3DSA:3.40.50.300 29 158 1.2E-24 T 11-10-2018 AMD27_05105 c33d568b6b279a4feacba3205f1efd46 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 3 227 1.6E-62 T 11-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 AMD27_05105 c33d568b6b279a4feacba3205f1efd46 235 SUPERFAMILY SSF52540 33 193 4.0E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12375 fb5baee29bcd132120e8a4ec3e41e0f6 181 Gene3D G3DSA:1.20.58.1610 2 121 1.0E-33 T 11-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12375 fb5baee29bcd132120e8a4ec3e41e0f6 181 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 18.441 T 11-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMD27_12375 fb5baee29bcd132120e8a4ec3e41e0f6 181 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 120 4.5E-28 T 11-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_16615 dfa96a1f86d902bbb765575a84e8c8b7 120 Gene3D G3DSA:3.30.1150.10 27 109 4.0E-6 T 11-10-2018 AMD27_16615 dfa96a1f86d902bbb765575a84e8c8b7 120 SUPERFAMILY SSF74653 49 107 2.88E-6 T 11-10-2018 AMD27_01650 94791a16da552cd8ea2462a3e533ccdf 1488 Pfam PF05567 Neisseria PilC beta-propeller domain 910 1309 2.2E-7 T 11-10-2018 IPR008707 PilC beta-propeller domain AMD27_05860 04ff41b3ff1812017c74f3e38e9d1318 59 Pfam PF13356 Arm DNA-binding domain 2 56 2.4E-6 T 11-10-2018 IPR025166 Integrase, DNA-binding domain AMD27_05860 04ff41b3ff1812017c74f3e38e9d1318 59 Gene3D G3DSA:3.30.160.390 1 59 3.4E-12 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 Gene3D G3DSA:3.40.50.1000 2 176 4.2E-53 T 11-10-2018 IPR023214 HAD superfamily AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 PIRSF PIRSF006118 2 175 7.9E-60 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 15 128 4.3E-14 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 Pfam PF08282 haloacid dehalogenase-like hydrolase 88 148 8.5E-10 T 11-10-2018 AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 SUPERFAMILY SSF56784 10 176 3.12E-42 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_06100 cf59c1630a701536038b51fea63cc69e 181 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 15 164 7.6E-47 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_02245 0a3074cfd1ae66974c7deb3485cc710b 174 SUPERFAMILY SSF55068 1 163 6.41E-71 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMD27_02245 0a3074cfd1ae66974c7deb3485cc710b 174 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 36.737 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMD27_02245 0a3074cfd1ae66974c7deb3485cc710b 174 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 4.3E-63 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMD27_02245 0a3074cfd1ae66974c7deb3485cc710b 174 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 3 152 9.3E-61 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMD27_02245 0a3074cfd1ae66974c7deb3485cc710b 174 Gene3D G3DSA:3.30.1060.10 1 160 8.3E-70 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMD27_15215 74c5e90caf88063c69bf67d94b4ab671 359 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 329 5.9E-76 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMD27_15215 74c5e90caf88063c69bf67d94b4ab671 359 SUPERFAMILY SSF51395 3 351 4.71E-109 T 11-10-2018 AMD27_15215 74c5e90caf88063c69bf67d94b4ab671 359 Gene3D G3DSA:3.20.20.70 1 358 7.1E-124 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_11230 c51042690ec0dead2dba0a05cde0ee31 81 Pfam PF01098 Cell cycle protein 2 71 7.8E-16 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_13320 f04c116f66d02c5030061ab36f6172ff 109 Pfam PF02699 Preprotein translocase subunit 24 97 2.3E-24 T 11-10-2018 IPR003849 Preprotein translocase YajC AMD27_13320 f04c116f66d02c5030061ab36f6172ff 109 SMART SM01323 19 101 1.7E-34 T 11-10-2018 IPR003849 Preprotein translocase YajC AMD27_13320 f04c116f66d02c5030061ab36f6172ff 109 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 101 2.7E-25 T 11-10-2018 IPR003849 Preprotein translocase YajC AMD27_13320 f04c116f66d02c5030061ab36f6172ff 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 41 59 8.6E-12 T 11-10-2018 IPR003849 Preprotein translocase YajC AMD27_13320 f04c116f66d02c5030061ab36f6172ff 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 8.6E-12 T 11-10-2018 IPR003849 Preprotein translocase YajC AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 175 21.154 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 SUPERFAMILY SSF74942 105 174 3.01E-10 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 Gene3D G3DSA:3.30.300.70 2 101 6.7E-17 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 Pfam PF17384 RimP C-terminal SH3 domain 109 173 4.1E-11 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 SUPERFAMILY SSF75420 3 104 3.14E-19 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily AMD27_01500 ee76ba9ce0069f9ab421f3ac9ab72da0 175 Pfam PF02576 RimP N-terminal domain 13 104 2.0E-19 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AMD27_05535 2c3255030c714b86603487b13dac1fb5 567 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_05535 2c3255030c714b86603487b13dac1fb5 567 Gene3D G3DSA:3.30.300.30 435 556 8.4E-6 T 11-10-2018 AMD27_05535 2c3255030c714b86603487b13dac1fb5 567 SUPERFAMILY SSF56801 13 558 6.8E-109 T 11-10-2018 AMD27_05535 2c3255030c714b86603487b13dac1fb5 567 Gene3D G3DSA:3.40.50.12780 4 433 2.9E-79 T 11-10-2018 AMD27_05535 2c3255030c714b86603487b13dac1fb5 567 Pfam PF00501 AMP-binding enzyme 25 440 1.0E-86 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_05830 6d64d6af1deeeb7460bcedc74fdaeef4 348 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 21 346 4.0E-84 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMD27_05830 6d64d6af1deeeb7460bcedc74fdaeef4 348 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 22 345 32.15 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMD27_05830 6d64d6af1deeeb7460bcedc74fdaeef4 348 Gene3D G3DSA:3.30.160.60 313 348 1.3E-17 T 11-10-2018 AMD27_05830 6d64d6af1deeeb7460bcedc74fdaeef4 348 Pfam PF02618 YceG-like family 54 339 2.1E-76 T 11-10-2018 IPR003770 Endolytic murein transglycosylase AMD27_06185 724775f1b6eaec6e1cc6c626ef283175 46 Gene3D G3DSA:3.30.420.470 1 46 3.9E-9 T 11-10-2018 AMD27_06185 724775f1b6eaec6e1cc6c626ef283175 46 Pfam PF13358 DDE superfamily endonuclease 1 28 1.8E-9 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain AMD27_10790 9ce0ea9d0c80d8630bc585d97a176296 420 TIGRFAM TIGR00937 2A51: chromate efflux transporter 17 407 6.0E-76 T 11-10-2018 IPR014047 Chromate transporter, long chain AMD27_10790 9ce0ea9d0c80d8630bc585d97a176296 420 Pfam PF02417 Chromate transporter 12 176 4.6E-32 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMD27_10790 9ce0ea9d0c80d8630bc585d97a176296 420 Pfam PF02417 Chromate transporter 251 406 1.2E-30 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMD27_10790 9ce0ea9d0c80d8630bc585d97a176296 420 PIRSF PIRSF004810 1 416 2.2E-97 T 11-10-2018 IPR014047 Chromate transporter, long chain AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 SUPERFAMILY SSF48168 127 335 1.57E-57 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 Pfam PF02867 Ribonucleotide reductase, barrel domain 337 871 3.6E-183 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 546 557 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 726 753 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 649 672 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 412 431 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 621 643 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 PRINTS PR01183 Ribonucleotide reductase large chain signature 583 606 1.3E-46 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 SUPERFAMILY SSF51998 336 873 1.16E-182 T 11-10-2018 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 Gene3D G3DSA:3.20.70.20 222 881 7.0E-247 T 11-10-2018 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 260 331 5.2E-19 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 263 873 1.5E-211 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 Pfam PF03477 ATP cone domain 122 201 1.2E-6 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 Pfam PF03477 ATP cone domain 11 108 2.3E-18 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMD27_12395 352b40a03a3729bc0efd28eda6c7a9b1 942 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 715 737 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 SUPERFAMILY SSF51735 1 253 2.2E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 Gene3D G3DSA:3.40.50.720 1 256 8.5E-79 T 11-10-2018 AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 Pfam PF00106 short chain dehydrogenase 6 205 2.7E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_09845 85b6b9deedd84aa193be3b234eb7b3b2 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 197 7.8E-6 T 11-10-2018 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 SUPERFAMILY SSF53067 4 112 4.21E-20 T 11-10-2018 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 237 5.4E-27 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 SUPERFAMILY SSF53067 118 238 4.14E-25 T 11-10-2018 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 Pfam PF03309 Type III pantothenate kinase 4 197 8.7E-40 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 242 18.952 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 Gene3D G3DSA:3.30.420.40 6 234 5.9E-47 T 11-10-2018 AMD27_12610 18e6a302998e871a7e50daf9e7ac92cd 243 Gene3D G3DSA:3.30.420.490 119 227 5.9E-47 T 11-10-2018 AMD27_09740 5b781177565ea05dec20e3499dc23be2 101 Gene3D G3DSA:1.10.1220.10 2 51 5.4E-13 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMD27_09740 5b781177565ea05dec20e3499dc23be2 101 Pfam PF04221 RelB antitoxin 6 81 1.4E-12 T 11-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ AMD27_09740 5b781177565ea05dec20e3499dc23be2 101 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 2 77 1.3E-16 T 11-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ AMD27_02200 f75e0855276115397f801fd172236b2f 572 Pfam PF00999 Sodium/hydrogen exchanger family 13 388 1.6E-71 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMD27_02200 f75e0855276115397f801fd172236b2f 572 SUPERFAMILY SSF51735 429 559 1.67E-22 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_02200 f75e0855276115397f801fd172236b2f 572 Gene3D G3DSA:1.20.1530.20 4 401 1.2E-75 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_02200 f75e0855276115397f801fd172236b2f 572 Pfam PF02254 TrkA-N domain 431 537 9.9E-18 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMD27_02200 f75e0855276115397f801fd172236b2f 572 Gene3D G3DSA:3.40.50.720 424 567 5.9E-24 T 11-10-2018 AMD27_01155 647ed0de1854aa937fa9e9d179984024 294 Pfam PF13180 PDZ domain 228 291 1.8E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 AMD27_01155 647ed0de1854aa937fa9e9d179984024 294 SUPERFAMILY SSF50156 200 291 5.13E-13 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 AMD27_01155 647ed0de1854aa937fa9e9d179984024 294 Gene3D G3DSA:2.30.42.10 195 294 1.1E-11 T 11-10-2018 AMD27_01155 647ed0de1854aa937fa9e9d179984024 294 Pfam PF11356 Type II secretion system protein C 25 142 4.2E-17 T 11-10-2018 IPR024961 Type II secretion system protein C, N-terminal AMD27_01155 647ed0de1854aa937fa9e9d179984024 294 Gene3D G3DSA:2.30.30.830 83 146 2.2E-9 T 11-10-2018 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 268 35.554 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 Gene3D G3DSA:3.40.1160.10 5 274 1.7E-93 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 375 2.3E-128 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PIRSF PIRSF000729 10 377 2.9E-129 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 SMART SM00359 286 369 1.2E-15 T 11-10-2018 IPR002478 PUA domain GO:0003723 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 SUPERFAMILY SSF88697 286 376 3.03E-20 T 11-10-2018 IPR015947 PUA-like superfamily AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 SUPERFAMILY SSF53633 15 265 3.67E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 ProSitePatterns PS00902 Glutamate 5-kinase signature. 216 233 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 7.1E-48 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 7.1E-48 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 7.1E-48 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 7.1E-48 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 7.1E-48 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 Gene3D G3DSA:2.30.130.10 275 377 4.4E-31 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 Pfam PF01472 PUA domain 286 360 3.1E-21 T 11-10-2018 IPR002478 PUA domain GO:0003723 AMD27_06575 c0e46e90b018d97cf7cf2d39f6bbcef6 377 Pfam PF00696 Amino acid kinase family 15 244 3.1E-47 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMD27_13185 eb4099fe099afaf7961fbed7e0325691 168 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 1 168 1.6E-40 T 11-10-2018 IPR006498 Tail tube protein AMD27_13185 eb4099fe099afaf7961fbed7e0325691 168 Pfam PF04985 Phage tail tube protein FII 3 167 5.2E-43 T 11-10-2018 IPR006498 Tail tube protein AMD27_07215 f940eccd2d01e694ca3012c656b48903 388 Gene3D G3DSA:1.10.10.2510 234 388 6.7E-14 T 11-10-2018 AMD27_07215 f940eccd2d01e694ca3012c656b48903 388 SUPERFAMILY SSF51197 5 293 6.45E-61 T 11-10-2018 AMD27_07215 f940eccd2d01e694ca3012c656b48903 388 Gene3D G3DSA:2.60.120.650 1 213 3.4E-73 T 11-10-2018 AMD27_07215 f940eccd2d01e694ca3012c656b48903 388 SMART SM00558 90 228 5.2E-5 T 11-10-2018 IPR003347 JmjC domain AMD27_07215 f940eccd2d01e694ca3012c656b48903 388 Pfam PF08007 Cupin superfamily protein 14 311 7.0E-90 T 11-10-2018 IPR003347 JmjC domain AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 Pfam PF00106 short chain dehydrogenase 16 204 9.2E-50 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PIRSF PIRSF000126 1 281 7.5E-51 T 11-10-2018 AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 2.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 2.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 2.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 SUPERFAMILY SSF51735 14 271 2.21E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 7.9E-26 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04615 05bfa1061bc193508e1f20cc3539376b 281 Gene3D G3DSA:3.40.50.720 12 265 1.4E-65 T 11-10-2018 AMD27_08780 5968a22afa1e36e2c4cc41bc8cfd3d34 145 PIRSF PIRSF000714 1 139 1.2E-48 T 11-10-2018 IPR026026 Histidine triad hydrolase, Hint-type AMD27_08780 5968a22afa1e36e2c4cc41bc8cfd3d34 145 Gene3D G3DSA:3.30.428.10 1 137 5.6E-39 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_08780 5968a22afa1e36e2c4cc41bc8cfd3d34 145 SUPERFAMILY SSF54197 1 133 4.89E-32 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_08780 5968a22afa1e36e2c4cc41bc8cfd3d34 145 Pfam PF01230 HIT domain 10 98 7.7E-12 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 Gene3D G3DSA:3.40.50.720 1 279 2.0E-69 T 11-10-2018 AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.8E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 SUPERFAMILY SSF51735 1 274 2.49E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15535 20f05c4fd815efd54916a2ff1c0b513b 281 Pfam PF00106 short chain dehydrogenase 7 199 1.3E-47 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 PIRSF PIRSF005917 1 278 3.8E-98 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 4 225 36.172 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 Gene3D G3DSA:3.30.950.10 112 232 1.3E-36 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 5 273 1.3E-82 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 SUPERFAMILY SSF53790 4 223 2.22E-78 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 204 4.5E-31 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 Gene3D G3DSA:3.40.1010.10 1 111 1.3E-44 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMD27_04890 58b4e6576c1ac0660a5d614395bcd231 279 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 82 93 - T 11-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 AMD27_08175 d0b52689c4cfe2ce66d465e9074d4ab4 402 Pfam PF07690 Major Facilitator Superfamily 18 300 4.7E-36 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_08175 d0b52689c4cfe2ce66d465e9074d4ab4 402 Gene3D G3DSA:1.20.1250.20 6 389 2.0E-50 T 11-10-2018 AMD27_08175 d0b52689c4cfe2ce66d465e9074d4ab4 402 SUPERFAMILY SSF103473 1 394 4.97E-58 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 Gene3D G3DSA:1.10.8.60 143 209 1.1E-9 T 11-10-2018 AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 Gene3D G3DSA:3.40.50.300 5 134 2.1E-22 T 11-10-2018 AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 Gene3D G3DSA:1.20.272.10 210 328 1.7E-21 T 11-10-2018 AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 Pfam PF06144 DNA polymerase III, delta subunit 20 181 6.0E-12 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 20 322 8.3E-44 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 SUPERFAMILY SSF52540 1 206 2.66E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13545 dc36050985f393cd93867e8b805fdcd1 329 SUPERFAMILY SSF48019 208 325 2.89E-25 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMD27_12235 3aaf59fcb9900ee67355d3fd058820f2 364 SUPERFAMILY SSF159245 126 361 4.18E-12 T 11-10-2018 AMD27_09835 e31dd6815df5cb1c1a487dd92865acf5 432 Pfam PF03109 ABC1 family 99 217 2.2E-31 T 11-10-2018 IPR004147 UbiB domain AMD27_09835 e31dd6815df5cb1c1a487dd92865acf5 432 SUPERFAMILY SSF56112 79 296 1.37E-21 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 Pfam PF00005 ABC transporter 22 191 1.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 Gene3D G3DSA:3.40.50.300 287 551 1.4E-72 T 11-10-2018 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 SMART SM00382 31 242 1.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 SMART SM00382 348 522 4.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 Pfam PF12848 ABC transporter 230 304 7.3E-11 T 11-10-2018 IPR032781 ABC-transporter extension domain AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 Gene3D G3DSA:3.40.50.300 1 286 3.2E-82 T 11-10-2018 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 551 4.8E-280 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 ProSitePatterns PS00211 ABC transporters family signature. 445 459 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 SUPERFAMILY SSF52540 302 531 1.96E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 Pfam PF00005 ABC transporter 339 473 1.7E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14720 6c4886aeacd4df4dc57146bad7c050d9 553 SUPERFAMILY SSF52540 9 244 4.54E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05980 2967cd027e491877ea6b62d7238c4aa4 168 Pfam PF01609 Transposase DDE domain 4 162 6.6E-22 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_06495 2967cd027e491877ea6b62d7238c4aa4 168 Pfam PF01609 Transposase DDE domain 4 162 6.6E-22 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_06725 2967cd027e491877ea6b62d7238c4aa4 168 Pfam PF01609 Transposase DDE domain 4 162 6.6E-22 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_13795 c4dc14a035f35bc919c91e08e69cbfb3 362 SUPERFAMILY SSF52540 53 293 1.1E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13795 c4dc14a035f35bc919c91e08e69cbfb3 362 Pfam PF02562 PhoH-like protein 118 321 2.3E-95 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 AMD27_13795 c4dc14a035f35bc919c91e08e69cbfb3 362 Gene3D G3DSA:3.40.50.300 115 321 9.8E-76 T 11-10-2018 AMD27_10385 90a356efbf5fc04245416228097f90c7 743 Gene3D G3DSA:3.40.718.10 407 664 9.2E-7 T 11-10-2018 AMD27_10385 90a356efbf5fc04245416228097f90c7 743 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 742 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMD27_10385 90a356efbf5fc04245416228097f90c7 743 PIRSF PIRSF009407 1 743 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMD27_10385 90a356efbf5fc04245416228097f90c7 743 SUPERFAMILY SSF53659 5 742 0.0 T 11-10-2018 AMD27_10385 90a356efbf5fc04245416228097f90c7 743 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMD27_17785 eefeb6a3786300a1a0bb27140b209a6d 1426 Pfam PF07916 TraG-like protein, N-terminal region 3 467 2.4E-42 T 11-10-2018 IPR012931 TraG-like, N-terminal AMD27_09640 09dc0ea64be89f0cc600824755fb4f5c 114 Gene3D G3DSA:2.40.10.220 4 114 2.8E-32 T 11-10-2018 AMD27_09640 09dc0ea64be89f0cc600824755fb4f5c 114 Pfam PF07238 PilZ domain 12 74 5.2E-5 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 Gene3D G3DSA:3.50.50.100 1 407 1.1E-106 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 SUPERFAMILY SSF51905 5 325 7.41E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 337 1.6E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.3E-6 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 2.3E-6 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.3E-6 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 2.7E-11 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.7E-11 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 2.7E-11 T 11-10-2018 AMD27_05330 65346dc79c2926d2987bc8bc1d19922e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 2.7E-11 T 11-10-2018 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.714 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 Gene3D G3DSA:1.20.20.10 1 77 8.1E-27 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 Pfam PF00137 ATP synthase subunit C 11 73 1.8E-9 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.3E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.3E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.3E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 SUPERFAMILY SSF81333 2 78 1.44E-18 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AMD27_00630 dd7efcdcfe0ecdea5ab464096243e5ac 87 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 2.9E-28 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 Gene3D G3DSA:3.40.190.10 162 251 3.6E-27 T 11-10-2018 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 4.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 Pfam PF03466 LysR substrate binding domain 92 266 3.3E-8 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 SUPERFAMILY SSF46785 4 82 2.21E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 Gene3D G3DSA:3.40.190.10 98 276 3.6E-27 T 11-10-2018 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 Gene3D G3DSA:1.10.10.10 4 94 6.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 SUPERFAMILY SSF53850 93 281 4.34E-15 T 11-10-2018 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_06190 809f7b2b446bbb5b9ee22529ef5e0f7c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_05240 5174f47e48b14371519533f8031249b1 195 SUPERFAMILY SSF48452 104 171 5.51E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_05240 5174f47e48b14371519533f8031249b1 195 Gene3D G3DSA:1.25.40.10 78 171 2.8E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_17550 966b0d811f15675721f65bee43ae0c90 526 Pfam PF06122 Conjugative relaxosome accessory transposon protein 57 454 3.1E-63 T 11-10-2018 IPR010927 Type IV conjugative transfer system protein TraH AMD27_03490 cd87e6a8e4c8bf4c09513321fa4c6a5e 119 Gene3D G3DSA:3.30.1330.40 1 119 7.1E-35 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_03490 cd87e6a8e4c8bf4c09513321fa4c6a5e 119 SUPERFAMILY SSF55298 13 118 9.9E-28 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_03490 cd87e6a8e4c8bf4c09513321fa4c6a5e 119 Pfam PF01042 Endoribonuclease L-PSP 13 117 1.6E-22 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_13285 f425bbfb5dfc40141804e8bdf3cb58a8 355 Gene3D G3DSA:1.10.443.10 172 349 1.9E-21 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMD27_13285 f425bbfb5dfc40141804e8bdf3cb58a8 355 SUPERFAMILY SSF56349 62 345 8.83E-46 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMD27_13285 f425bbfb5dfc40141804e8bdf3cb58a8 355 Gene3D G3DSA:1.10.150.130 60 171 9.9E-10 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal AMD27_13285 f425bbfb5dfc40141804e8bdf3cb58a8 355 Pfam PF00589 Phage integrase family 172 335 7.5E-14 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMD27_07205 89d06ca99727035b2d00d46c54274864 342 Gene3D G3DSA:3.40.50.1820 70 338 3.4E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07205 89d06ca99727035b2d00d46c54274864 342 Pfam PF12146 Serine aminopeptidase, S33 83 318 2.3E-34 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_07205 89d06ca99727035b2d00d46c54274864 342 SUPERFAMILY SSF53474 71 325 1.12E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 1.1E-19 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 1.3E-17 T 11-10-2018 AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 Gene3D G3DSA:1.10.10.10 1 56 4.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 SUPERFAMILY SSF46785 2 62 2.06E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 SUPERFAMILY SSF54909 63 151 4.56E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 Gene3D G3DSA:3.30.70.920 57 140 9.0E-24 T 11-10-2018 AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 SMART SM00344 3 112 8.2E-39 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.7E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.7E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03110 0cc3612370fb8bc308651b1419a64de6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.7E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 SUPERFAMILY SSF51905 2 314 9.15E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 301 1.2E-49 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 2.0E-38 T 11-10-2018 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.0E-38 T 11-10-2018 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.0E-38 T 11-10-2018 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 2.0E-38 T 11-10-2018 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.0E-38 T 11-10-2018 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 313 1.9E-119 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 294 313 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 8.1E-78 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 Gene3D G3DSA:3.50.50.60 8 312 3.4E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_03565 682d97b9c0edfdc6091803ca00fc7142 316 Gene3D G3DSA:3.50.50.60 117 244 3.4E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_15860 9996983a5b7cb50c93135121596ff686 391 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 351 1.6E-186 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AMD27_15860 9996983a5b7cb50c93135121596ff686 391 Pfam PF00296 Luciferase-like monooxygenase 1 327 5.9E-85 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMD27_15860 9996983a5b7cb50c93135121596ff686 391 Gene3D G3DSA:3.20.20.30 1 363 4.0E-142 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_15860 9996983a5b7cb50c93135121596ff686 391 SUPERFAMILY SSF51679 1 351 4.71E-93 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_15860 9996983a5b7cb50c93135121596ff686 391 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 382 77.986 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AMD27_14905 40edad5b0f3432d627a5a76cf4b06111 154 SUPERFAMILY SSF53098 9 143 4.3E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_14905 40edad5b0f3432d627a5a76cf4b06111 154 Pfam PF03400 IS1 transposase 15 139 3.0E-24 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 Gene3D G3DSA:3.40.50.170 1 208 1.5E-76 T 11-10-2018 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 Pfam PF00551 Formyl transferase 3 178 7.6E-58 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 184 29.764 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 130 153 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 SUPERFAMILY SSF53328 3 200 5.23E-62 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMD27_05090 733147d7522bcf8ee4f15ead006a5a02 210 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 187 4.0E-69 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMD27_04005 ea6654a10bd02ca4bab0840e25316148 397 SUPERFAMILY SSF56935 33 394 5.04E-14 T 11-10-2018 AMD27_08460 8c2e45f5af29f67a6c1192ebccb3f116 318 Pfam PF13730 Helix-turn-helix domain 22 74 3.6E-9 T 11-10-2018 AMD27_08460 8c2e45f5af29f67a6c1192ebccb3f116 318 Gene3D G3DSA:1.10.10.10 17 100 1.3E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08460 8c2e45f5af29f67a6c1192ebccb3f116 318 SUPERFAMILY SSF46785 22 84 3.45E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_11755 f925f1075d3e7797b10342d42171d9b2 301 Pfam PF01758 Sodium Bile acid symporter family 210 299 6.5E-7 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMD27_11755 f925f1075d3e7797b10342d42171d9b2 301 Gene3D G3DSA:1.20.1530.20 158 301 1.2E-8 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 317 528 1.1E-45 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Gene3D G3DSA:3.30.980.10 69 221 4.1E-60 T 11-10-2018 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Pfam PF03129 Anticodon binding domain 540 628 4.1E-19 T 11-10-2018 IPR004154 Anticodon-binding AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Pfam PF02824 TGS domain 4 61 4.9E-10 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Gene3D G3DSA:3.30.930.10 222 530 1.3E-127 T 11-10-2018 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Gene3D G3DSA:3.40.50.800 531 636 2.5E-28 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 SMART SM00863 169 218 1.0E-19 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.226 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 SUPERFAMILY SSF52954 528 630 6.64E-30 T 11-10-2018 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 628 4.9E-221 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 9.8E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 9.8E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 9.8E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 9.8E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 9.8E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 SUPERFAMILY SSF55186 63 240 8.24E-64 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Gene3D G3DSA:3.10.20.30 3 63 9.6E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Gene3D G3DSA:3.30.54.20 130 186 4.1E-60 T 11-10-2018 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 218 4.8E-14 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 SUPERFAMILY SSF81271 3 61 1.05E-14 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMD27_02705 92edd47ceeb68163dfed9ecb597b5ae6 640 SUPERFAMILY SSF55681 242 525 1.55E-99 T 11-10-2018 AMD27_07250 1416da5fa91d371f1f5ebe7298c434b5 284 SUPERFAMILY SSF103481 38 135 4.97E-9 T 11-10-2018 AMD27_07250 1416da5fa91d371f1f5ebe7298c434b5 284 Pfam PF00892 EamA-like transporter family 3 132 9.0E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_07250 1416da5fa91d371f1f5ebe7298c434b5 284 Pfam PF00892 EamA-like transporter family 147 280 1.5E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_07250 1416da5fa91d371f1f5ebe7298c434b5 284 SUPERFAMILY SSF103481 183 282 1.44E-8 T 11-10-2018 AMD27_17125 038c1cee65ec83b00d4e86d5bd434271 247 SUPERFAMILY SSF50249 4 101 9.25E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_17125 038c1cee65ec83b00d4e86d5bd434271 247 Pfam PF00436 Single-strand binding protein family 4 99 5.2E-18 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMD27_17125 038c1cee65ec83b00d4e86d5bd434271 247 Gene3D G3DSA:2.40.50.140 1 139 1.0E-24 T 11-10-2018 AMD27_12705 dd388c6f42740d8495fea35cab0a9119 192 Pfam PF13548 Domain of unknown function (DUF4126) 7 179 6.1E-49 T 11-10-2018 IPR025196 Domain of unknown function DUF4126 AMD27_04100 21a676a9ac608672c2f658eda1323444 205 Pfam PF01694 Rhomboid family 40 189 9.3E-25 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMD27_04100 21a676a9ac608672c2f658eda1323444 205 Gene3D G3DSA:1.20.1540.10 4 193 5.2E-27 T 11-10-2018 IPR035952 Rhomboid-like superfamily AMD27_04100 21a676a9ac608672c2f658eda1323444 205 SUPERFAMILY SSF144091 8 190 1.83E-35 T 11-10-2018 AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 3.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 3.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 3.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 Gene3D G3DSA:1.10.10.10 1 143 6.0E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 Pfam PF01047 MarR family 36 94 3.3E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 SUPERFAMILY SSF46785 4 138 4.12E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_13055 be4be5736da22022ed8e1f3f0d1435cc 143 SMART SM00347 29 130 9.7E-23 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMD27_05555 c88cf1084e2c52ae9ec0b6753ad15023 255 Pfam PF01925 Sulfite exporter TauE/SafE 11 249 1.2E-35 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 SUPERFAMILY SSF46785 7 66 2.85E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 1.6E-17 T 11-10-2018 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 SUPERFAMILY SSF54909 70 155 4.02E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 Gene3D G3DSA:1.10.10.10 1 61 1.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 SMART SM00344 8 117 7.2E-39 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 Gene3D G3DSA:3.30.70.920 62 145 1.1E-19 T 11-10-2018 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.1E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.1E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.1E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMD27_09220 ff6e91915d0509c723c39f9fa3d5b08e 163 Pfam PF01037 Lrp/AsnC ligand binding domain 75 147 1.6E-18 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMD27_04300 acb88ca5b0b756dac6f8757afff95502 684 PIRSF PIRSF015380 2 681 2.9E-169 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr AMD27_04300 acb88ca5b0b756dac6f8757afff95502 684 Pfam PF10136 Site-specific recombinase 25 665 3.0E-226 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr AMD27_00875 a829186f107119d762ef32d02ac6b9b4 132 SUPERFAMILY SSF161084 7 129 1.11E-27 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMD27_00875 a829186f107119d762ef32d02ac6b9b4 132 Pfam PF01124 MAPEG family 8 129 1.2E-24 T 11-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AMD27_00875 a829186f107119d762ef32d02ac6b9b4 132 Gene3D G3DSA:1.20.120.550 7 132 6.8E-17 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMD27_13160 c9fae5eb2f078ad3ee3bccbdcf1eb54a 174 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 5 118 4.2E-25 T 11-10-2018 IPR006521 Tail protein I AMD27_13160 c9fae5eb2f078ad3ee3bccbdcf1eb54a 174 Pfam PF09684 Phage tail protein (Tail_P2_I) 5 142 5.1E-29 T 11-10-2018 IPR006521 Tail protein I AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 SUPERFAMILY SSF54523 263 384 3.14E-14 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Gene3D G3DSA:3.30.1300.30 279 384 1.7E-28 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 40 72 2.0E-8 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 249 288 2.1E-8 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 100 142 4.4E-10 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 184 226 1.1E-6 T 11-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Gene3D G3DSA:3.30.390.90 6 45 1.9E-11 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Pfam PF03895 YadA-like membrane anchor domain 318 384 3.6E-8 T 11-10-2018 IPR005594 YadA-like, C-terminal AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Gene3D G3DSA:1.20.5.170 255 278 4.1E-8 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Gene3D G3DSA:1.20.5.170 106 152 9.1E-11 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 Gene3D G3DSA:1.20.5.170 186 230 5.4E-9 T 11-10-2018 AMD27_16185 91e73dcf959cd46a7b7dc8e3f8cd46a1 385 SUPERFAMILY SSF101967 14 63 9.15E-9 T 11-10-2018 AMD27_02465 91614a48c25090b6dba3c5dd50910a73 272 Gene3D G3DSA:3.30.565.40 43 155 9.5E-8 T 11-10-2018 AMD27_05665 62499831e7abd508ee1cd1d02be8b35b 398 Gene3D G3DSA:3.30.1540.10 234 324 4.6E-120 T 11-10-2018 AMD27_05665 62499831e7abd508ee1cd1d02be8b35b 398 SUPERFAMILY SSF89796 2 397 8.11E-121 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMD27_05665 62499831e7abd508ee1cd1d02be8b35b 398 Pfam PF02515 CoA-transferase family III 3 373 1.7E-116 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMD27_05665 62499831e7abd508ee1cd1d02be8b35b 398 Gene3D G3DSA:3.40.50.10540 3 391 4.6E-120 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily AMD27_02520 05616cf673c83703edb871275cf904a7 338 SUPERFAMILY SSF56059 103 320 1.3E-20 T 11-10-2018 AMD27_02520 05616cf673c83703edb871275cf904a7 338 Pfam PF15632 ATP-grasp in the biosynthetic pathway with Ter operon 6 325 3.7E-78 T 11-10-2018 IPR011226 ATP-grasp family AMD27_02520 05616cf673c83703edb871275cf904a7 338 Gene3D G3DSA:3.30.470.20 214 307 5.7E-17 T 11-10-2018 AMD27_02520 05616cf673c83703edb871275cf904a7 338 Gene3D G3DSA:3.40.50.20 48 103 5.7E-17 T 11-10-2018 AMD27_02520 05616cf673c83703edb871275cf904a7 338 Gene3D G3DSA:3.30.1490.20 104 213 5.7E-17 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMD27_11750 485b374893f711073c61dbc5e2f98120 224 Pfam PF04239 Protein of unknown function (DUF421) 101 165 1.0E-12 T 11-10-2018 IPR007353 Protein of unknown function DUF421 AMD27_11750 485b374893f711073c61dbc5e2f98120 224 Gene3D G3DSA:3.30.240.20 92 164 1.4E-15 T 11-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AMD27_14630 f5b5c17108b1f893e2a26c150a6c6a0c 243 Pfam PF04350 Pilus assembly protein, PilO 73 220 6.0E-50 T 11-10-2018 IPR007445 Pilus assembly protein, PilO AMD27_14630 f5b5c17108b1f893e2a26c150a6c6a0c 243 Gene3D G3DSA:3.30.70.60 118 227 4.6E-34 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMD27_14630 f5b5c17108b1f893e2a26c150a6c6a0c 243 PIRSF PIRSF016482 18 231 4.3E-58 T 11-10-2018 IPR007445 Pilus assembly protein, PilO AMD27_05425 8fed193199545c52e0665ca46728baef 126 Pfam PF06127 Protein of unknown function (DUF962) 21 113 2.6E-29 T 11-10-2018 IPR009305 Protein of unknown function DUF962 AMD27_01640 3f4e0a7bf59c556d333d25b51dabfdaa 317 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 6.2E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01640 3f4e0a7bf59c556d333d25b51dabfdaa 317 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.2E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01640 3f4e0a7bf59c556d333d25b51dabfdaa 317 SUPERFAMILY SSF54523 7 103 1.18E-6 T 11-10-2018 AMD27_01640 3f4e0a7bf59c556d333d25b51dabfdaa 317 Pfam PF16074 Type IV Pilus-assembly protein W 154 308 3.4E-13 T 11-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 AMD27_15955 b3041c661b0130f9126b4dc5946436ca 157 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 13 151 5.6E-32 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein AMD27_15955 b3041c661b0130f9126b4dc5946436ca 157 Pfam PF04965 Gene 25-like lysozyme 34 132 1.3E-17 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AMD27_15955 b3041c661b0130f9126b4dc5946436ca 157 SUPERFAMILY SSF160719 31 146 9.02E-11 T 11-10-2018 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 3.1E-163 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 Gene3D G3DSA:3.30.930.10 3 216 7.1E-113 T 11-10-2018 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 9.4E-154 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 Gene3D G3DSA:1.20.58.180 217 298 2.8E-34 T 11-10-2018 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 SUPERFAMILY SSF55681 10 291 2.08E-137 T 11-10-2018 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.297 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01865 6fbdc4ad37e32a734eff46e43555674a 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.3E-69 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_15430 4a1c7f26fd15250bf065c449c6bf8a8f 553 Pfam PF02653 Branched-chain amino acid transport system / permease component 262 536 2.3E-50 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMD27_15430 4a1c7f26fd15250bf065c449c6bf8a8f 553 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 260 550 2.1E-128 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AMD27_05605 aad3536a1797afd9500c5d5f53691081 294 Pfam PF13557 Putative MetA-pathway of phenol degradation 60 289 5.9E-32 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative AMD27_12370 2c87442b61382f185d9474410341dd96 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 25 179 42.735 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12370 2c87442b61382f185d9474410341dd96 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 172 3.2E-22 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12370 2c87442b61382f185d9474410341dd96 225 Gene3D G3DSA:3.40.50.12280 19 190 9.7E-70 T 11-10-2018 AMD27_12370 2c87442b61382f185d9474410341dd96 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 45 179 7.5E-68 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12370 2c87442b61382f185d9474410341dd96 225 SUPERFAMILY SSF56770 44 182 1.57E-63 T 11-10-2018 AMD27_12370 2c87442b61382f185d9474410341dd96 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 146 162 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14805 91811c65fee383f8bab2281f8239c2b6 135 SUPERFAMILY SSF47413 13 71 2.19E-10 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_14805 91811c65fee383f8bab2281f8239c2b6 135 Gene3D G3DSA:1.10.260.40 7 76 2.4E-13 T 11-10-2018 AMD27_14805 91811c65fee383f8bab2281f8239c2b6 135 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 15 66 6.7E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_14805 91811c65fee383f8bab2281f8239c2b6 135 SMART SM00530 15 70 1.1E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_04945 b2645072c1e453be55bc06253c963a74 337 Gene3D G3DSA:1.10.3720.10 126 335 2.4E-18 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_04945 b2645072c1e453be55bc06253c963a74 337 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 9 46 5.4E-6 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMD27_04945 b2645072c1e453be55bc06253c963a74 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 336 3.2E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_04945 b2645072c1e453be55bc06253c963a74 337 SUPERFAMILY SSF161098 132 319 1.18E-20 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 201 223 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 SUPERFAMILY SSF55021 333 409 8.46E-18 T 11-10-2018 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 Gene3D G3DSA:3.40.50.720 15 313 1.1E-103 T 11-10-2018 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 Gene3D G3DSA:3.40.50.720 110 298 1.1E-103 T 11-10-2018 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 SUPERFAMILY SSF51735 109 296 3.5E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 295 1.3E-50 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 SUPERFAMILY SSF52283 9 136 3.19E-48 T 11-10-2018 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 Gene3D G3DSA:3.30.70.260 329 409 5.6E-30 T 11-10-2018 AMD27_01735 6475f1705116a818049f5efbe79ff4f3 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 327 2.3E-33 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMD27_12685 60e736d2b38232283699ce1f7a9ed8f6 154 SUPERFAMILY SSF54427 10 133 5.85E-18 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_12685 60e736d2b38232283699ce1f7a9ed8f6 154 Gene3D G3DSA:3.10.450.50 11 146 3.2E-24 T 11-10-2018 AMD27_12685 60e736d2b38232283699ce1f7a9ed8f6 154 Pfam PF13474 SnoaL-like domain 22 134 3.2E-13 T 11-10-2018 IPR037401 SnoaL-like domain AMD27_08010 90eedbdc6f70bbeb459e2be044580ef4 575 Gene3D G3DSA:3.30.750.24 437 571 2.9E-25 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_08010 90eedbdc6f70bbeb459e2be044580ef4 575 TIGRFAM TIGR00815 sulP: sulfate permease 13 554 2.3E-128 T 11-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 AMD27_08010 90eedbdc6f70bbeb459e2be044580ef4 575 SUPERFAMILY SSF52091 460 569 2.55E-14 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_08010 90eedbdc6f70bbeb459e2be044580ef4 575 Pfam PF00916 Sulfate permease family 26 406 2.7E-98 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMD27_08010 90eedbdc6f70bbeb459e2be044580ef4 575 Pfam PF01740 STAS domain 467 565 5.7E-16 T 11-10-2018 IPR002645 STAS domain AMD27_04310 31d7e06be46d01ded5e56d1e4752515c 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.235 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04310 31d7e06be46d01ded5e56d1e4752515c 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_04310 31d7e06be46d01ded5e56d1e4752515c 103 SUPERFAMILY SSF141091 1 101 3.01E-39 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04310 31d7e06be46d01ded5e56d1e4752515c 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.1E-40 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_04310 31d7e06be46d01ded5e56d1e4752515c 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.4E-41 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_10930 68c249cd72df4694f6776773b0f3baeb 553 Pfam PF02470 MlaD protein 305 403 2.3E-16 T 11-10-2018 IPR003399 Mce/MlaD AMD27_10930 68c249cd72df4694f6776773b0f3baeb 553 Pfam PF02470 MlaD protein 66 153 4.7E-10 T 11-10-2018 IPR003399 Mce/MlaD AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 Pfam PF00106 short chain dehydrogenase 6 191 2.4E-50 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 SUPERFAMILY SSF51735 3 260 8.32E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.9E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.9E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.9E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.9E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.9E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.0E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 189 0.0064 T 11-10-2018 AMD27_04255 fbd84c7451fbf7e67f49cdbf34d923e7 264 Gene3D G3DSA:3.40.50.720 2 264 3.9E-65 T 11-10-2018 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 Pfam PF01958 Domain of unknown function DUF108 164 251 4.8E-31 T 11-10-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 SUPERFAMILY SSF51735 1 149 4.6E-19 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 9 116 1.3E-10 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 Gene3D G3DSA:3.40.50.720 6 256 1.4E-67 T 11-10-2018 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 SUPERFAMILY SSF55347 120 233 3.53E-30 T 11-10-2018 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 PIRSF PIRSF005227 1 263 1.4E-68 T 11-10-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 Gene3D G3DSA:3.30.360.10 120 238 1.4E-67 T 11-10-2018 AMD27_03990 7f4a75ebb1c2055cae1fc76b0f97b27b 263 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 263 33.425 T 11-10-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 AMD27_04900 b9061ca7eeb4321e07c765be9f63e8fd 142 Pfam PF02021 Uncharacterised protein family UPF0102 14 104 2.6E-24 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMD27_04900 b9061ca7eeb4321e07c765be9f63e8fd 142 SUPERFAMILY SSF52980 10 108 5.04E-19 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_04900 b9061ca7eeb4321e07c765be9f63e8fd 142 Gene3D G3DSA:3.40.1350.10 13 136 1.5E-27 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMD27_04900 b9061ca7eeb4321e07c765be9f63e8fd 142 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 6 119 1.6E-24 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMD27_04900 b9061ca7eeb4321e07c765be9f63e8fd 142 Hamap MF_00048 UPF0102 protein YraN [yraN]. 7 118 20.016 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMD27_11285 4559d7beb23933dcf8262a2b0a419ae5 228 SMART SM00463 137 218 8.1E-9 T 11-10-2018 IPR002625 Smr domain AMD27_11285 4559d7beb23933dcf8262a2b0a419ae5 228 SUPERFAMILY SSF160443 142 218 9.68E-13 T 11-10-2018 IPR036063 Smr domain superfamily AMD27_11285 4559d7beb23933dcf8262a2b0a419ae5 228 Pfam PF01713 Smr domain 142 218 9.9E-19 T 11-10-2018 IPR002625 Smr domain AMD27_11285 4559d7beb23933dcf8262a2b0a419ae5 228 Gene3D G3DSA:3.30.1370.110 96 223 2.0E-31 T 11-10-2018 AMD27_03795 0a8fc249b41ec758693935075679c900 968 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 8 703 2.1E-134 T 11-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 AMD27_03795 0a8fc249b41ec758693935075679c900 968 Pfam PF04851 Type III restriction enzyme, res subunit 241 405 2.4E-38 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMD27_03795 0a8fc249b41ec758693935075679c900 968 SUPERFAMILY SSF52540 263 671 2.52E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03795 0a8fc249b41ec758693935075679c900 968 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 4 191 1.1E-25 T 11-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 AMD27_03795 0a8fc249b41ec758693935075679c900 968 Gene3D G3DSA:1.20.58.910 705 790 3.1E-25 T 11-10-2018 AMD27_03795 0a8fc249b41ec758693935075679c900 968 Gene3D G3DSA:3.40.50.300 242 431 3.5E-62 T 11-10-2018 AMD27_03795 0a8fc249b41ec758693935075679c900 968 Gene3D G3DSA:3.90.1570.50 4 234 8.3E-67 T 11-10-2018 AMD27_03795 0a8fc249b41ec758693935075679c900 968 SUPERFAMILY SSF52540 219 408 5.2E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03795 0a8fc249b41ec758693935075679c900 968 Gene3D G3DSA:3.90.640.50 29 98 8.3E-67 T 11-10-2018 AMD27_03795 0a8fc249b41ec758693935075679c900 968 SMART SM00487 239 431 2.0E-22 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_03795 0a8fc249b41ec758693935075679c900 968 Pfam PF12008 Type I restriction and modification enzyme - subunit R C terminal 706 954 2.1E-42 T 11-10-2018 IPR022625 Type-1 restriction enzyme R protein, C-terminal AMD27_03795 0a8fc249b41ec758693935075679c900 968 Gene3D G3DSA:3.40.50.300 432 704 4.6E-84 T 11-10-2018 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 Gene3D G3DSA:3.90.20.20 23 128 2.5E-18 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 ProSitePatterns PS01071 grpE protein signature. 139 180 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 PRINTS PR00773 GrpE protein signature 57 73 2.8E-18 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 PRINTS PR00773 GrpE protein signature 161 180 2.8E-18 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 PRINTS PR00773 GrpE protein signature 85 100 2.8E-18 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 PRINTS PR00773 GrpE protein signature 136 151 2.8E-18 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 SUPERFAMILY SSF58014 34 129 7.45E-18 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 Pfam PF01025 GrpE 23 181 1.1E-35 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 Gene3D G3DSA:2.30.22.10 129 182 7.9E-14 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 SUPERFAMILY SSF51064 136 181 4.58E-10 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMD27_00080 e7f92ed587025a500c9c6d2caf989d48 182 Hamap MF_01151 Protein GrpE [grpE]. 3 182 16.286 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 SUPERFAMILY SSF50814 36 194 1.84E-43 T 11-10-2018 IPR012674 Calycin AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 PRINTS PR01171 Bacterial lipocalin signature 154 165 3.3E-8 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 PRINTS PR01171 Bacterial lipocalin signature 181 191 3.3E-8 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 PRINTS PR01171 Bacterial lipocalin signature 82 91 3.3E-8 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 PRINTS PR01171 Bacterial lipocalin signature 45 59 3.3E-8 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 PIRSF PIRSF036893 7 195 4.5E-53 T 11-10-2018 IPR022271 Lipocalin, ApoD type AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 Gene3D G3DSA:2.40.128.20 26 195 1.0E-48 T 11-10-2018 IPR012674 Calycin AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 Pfam PF08212 Lipocalin-like domain 45 192 1.4E-45 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain AMD27_06520 93bace98d6bc07482c1eb20c9567d5eb 195 ProSitePatterns PS00213 Lipocalin signature. 46 57 - T 11-10-2018 IPR022272 Lipocalin family conserved site AMD27_10775 f93664aed04450b48d9629dd1e718679 307 Gene3D G3DSA:3.40.190.290 92 296 3.5E-54 T 11-10-2018 AMD27_10775 f93664aed04450b48d9629dd1e718679 307 SUPERFAMILY SSF53850 89 297 7.96E-39 T 11-10-2018 AMD27_10775 f93664aed04450b48d9629dd1e718679 307 SUPERFAMILY SSF46785 3 85 3.88E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_10775 f93664aed04450b48d9629dd1e718679 307 Pfam PF03466 LysR substrate binding domain 89 296 3.4E-38 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_10775 f93664aed04450b48d9629dd1e718679 307 Gene3D G3DSA:1.10.10.10 2 89 1.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10775 f93664aed04450b48d9629dd1e718679 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 Gene3D G3DSA:3.40.50.1820 3 254 5.8E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 1.4E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 198 212 1.4E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 1.4E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 1.4E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 Pfam PF12697 Alpha/beta hydrolase family 19 244 1.9E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_08100 46f7cbaaa71ffe2fe08efd8f32ec95a0 255 SUPERFAMILY SSF53474 15 253 8.44E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05325 58a7174eb292252ed148b212cc6d605a 160 Gene3D G3DSA:2.40.10.330 71 121 1.3E-55 T 11-10-2018 AMD27_05325 58a7174eb292252ed148b212cc6d605a 160 SUPERFAMILY SSF54534 5 140 1.14E-36 T 11-10-2018 AMD27_05325 58a7174eb292252ed148b212cc6d605a 160 Gene3D G3DSA:3.10.50.40 4 154 1.3E-55 T 11-10-2018 AMD27_05325 58a7174eb292252ed148b212cc6d605a 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 7 136 9.8E-14 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_14125 fd934926e26b5562522257b6cbe33c49 178 Gene3D G3DSA:1.20.120.520 37 178 4.5E-8 T 11-10-2018 AMD27_14125 fd934926e26b5562522257b6cbe33c49 178 Pfam PF01814 Hemerythrin HHE cation binding domain 48 175 1.3E-10 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 SUPERFAMILY SSF47203 292 425 2.58E-36 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 80 189 1.6E-18 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 Gene3D G3DSA:2.40.110.10 192 295 9.9E-9 T 11-10-2018 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 399 418 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 SUPERFAMILY SSF56645 75 289 9.03E-31 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 Gene3D G3DSA:1.10.540.10 69 191 9.7E-22 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 Gene3D G3DSA:1.20.140.10 296 428 1.5E-34 T 11-10-2018 AMD27_08695 75b214ba6cea72810e78e1bf086084c4 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 301 425 9.7E-28 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_00845 1d13b0d01959be9d8c85c58f950be0a9 155 Pfam PF02810 SEC-C motif 136 152 5.5E-7 T 11-10-2018 IPR004027 SEC-C motif AMD27_00845 1d13b0d01959be9d8c85c58f950be0a9 155 SUPERFAMILY SSF103642 133 154 4.74E-7 T 11-10-2018 AMD27_00845 1d13b0d01959be9d8c85c58f950be0a9 155 Gene3D G3DSA:3.10.450.50 2 155 1.1E-55 T 11-10-2018 AMD27_00845 1d13b0d01959be9d8c85c58f950be0a9 155 SUPERFAMILY SSF54427 25 128 1.75E-34 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 SMART SM00411 6 96 4.7E-36 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 SUPERFAMILY SSF47729 6 97 1.62E-27 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 7 98 2.5E-38 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 52 71 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 Gene3D G3DSA:4.10.520.10 6 99 9.0E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 PRINTS PR01727 Prokaryotic integration host factor signature 64 77 1.3E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 PRINTS PR01727 Prokaryotic integration host factor signature 46 61 1.3E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 PRINTS PR01727 Prokaryotic integration host factor signature 80 94 1.3E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_09570 f91f043f55b9c4cb75d97c70c1561f5f 101 Pfam PF00216 Bacterial DNA-binding protein 6 96 7.5E-27 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMD27_16805 4dfa6ff1a5bf3264c0031dacc1a3e322 377 SUPERFAMILY SSF46785 70 169 3.45E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_16805 4dfa6ff1a5bf3264c0031dacc1a3e322 377 SUPERFAMILY SSF46785 163 272 6.67E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_16805 4dfa6ff1a5bf3264c0031dacc1a3e322 377 Pfam PF01051 Initiator Replication protein 72 271 4.3E-17 T 11-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 AMD27_16805 4dfa6ff1a5bf3264c0031dacc1a3e322 377 Gene3D G3DSA:1.10.10.10 184 277 1.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09245 f058c8718b5421ff4d53fb247ae91613 122 SUPERFAMILY SSF55331 2 118 7.07E-23 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_09245 f058c8718b5421ff4d53fb247ae91613 122 Gene3D G3DSA:3.30.429.10 1 122 6.1E-27 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 57.212 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 271 6.5E-146 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0011 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 1.1E-12 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Gene3D G3DSA:1.10.166.10 1 70 2.9E-29 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 SUPERFAMILY SSF51161 2 256 8.87E-74 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Gene3D G3DSA:2.160.10.10 87 257 1.2E-55 T 11-10-2018 AMD27_05785 e9cca4aa94346f2e97217c948c5a57cb 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 4.0E-25 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AMD27_09710 60821ce2bbf5a8b82c898fdaf027f5f2 177 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.6 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMD27_09710 60821ce2bbf5a8b82c898fdaf027f5f2 177 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.2E-29 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMD27_09710 60821ce2bbf5a8b82c898fdaf027f5f2 177 Pfam PF17209 Hfq protein 7 68 1.0E-30 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMD27_09710 60821ce2bbf5a8b82c898fdaf027f5f2 177 Gene3D G3DSA:2.30.30.100 1 69 1.5E-31 T 11-10-2018 AMD27_09710 60821ce2bbf5a8b82c898fdaf027f5f2 177 SUPERFAMILY SSF50182 7 67 3.48E-23 T 11-10-2018 IPR010920 LSM domain superfamily AMD27_10600 faf5e5765264f644b30744eb1705ae9c 232 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 206 1.3E-38 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMD27_10600 faf5e5765264f644b30744eb1705ae9c 232 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 9 227 38.811 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMD27_10600 faf5e5765264f644b30744eb1705ae9c 232 TIGRFAM TIGR02796 tolQ: protein TolQ 11 222 4.2E-82 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 PIRSF PIRSF003128 1 551 2.1E-133 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 Gene3D G3DSA:3.40.50.300 1 203 1.3E-38 T 11-10-2018 AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 545 5.9E-135 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 503 7.8E-18 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 SUPERFAMILY SSF52540 1 201 7.97E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 SUPERFAMILY SSF52540 3 502 1.65E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01420 6fb718f0f20b08432e07c6b56b5a945e 556 Gene3D G3DSA:3.40.50.300 221 547 2.3E-45 T 11-10-2018 AMD27_02500 dc990bc2f38d6a97ad513a4a95c05eac 310 Gene3D G3DSA:3.20.20.60 5 303 2.7E-15 T 11-10-2018 AMD27_02500 dc990bc2f38d6a97ad513a4a95c05eac 310 SUPERFAMILY SSF51621 10 244 2.2E-24 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_02500 dc990bc2f38d6a97ad513a4a95c05eac 310 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 6 293 1.4E-83 T 11-10-2018 IPR039480 C-C bond lyase-like AMD27_02500 dc990bc2f38d6a97ad513a4a95c05eac 310 PIRSF PIRSF015582 2 302 1.0E-37 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like AMD27_12300 d725ecadf5f2cacdc3f71e149c425bd3 229 Pfam PF13610 DDE domain 75 210 3.1E-48 T 11-10-2018 IPR032874 DDE domain AMD27_12300 d725ecadf5f2cacdc3f71e149c425bd3 229 SUPERFAMILY SSF53098 73 189 5.5E-12 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_12300 d725ecadf5f2cacdc3f71e149c425bd3 229 Gene3D G3DSA:3.30.420.10 69 212 1.2E-5 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 Gene3D G3DSA:3.40.30.10 100 232 4.4E-33 T 11-10-2018 AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 SUPERFAMILY SSF54423 28 82 5.1E-12 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 SUPERFAMILY SSF52833 92 228 2.53E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 79 5.6E-13 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 Gene3D G3DSA:3.10.450.70 20 83 1.5E-8 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 Pfam PF13098 Thioredoxin-like domain 109 228 1.5E-27 T 11-10-2018 IPR012336 Thioredoxin-like fold AMD27_16140 8ac5ac0199e2259071d908ce37369522 234 ProSitePatterns PS00194 Thioredoxin family active site. 116 134 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMD27_02735 c7e44c3c6bc90468a681747e991f431f 243 SUPERFAMILY SSF74653 29 114 4.84E-8 T 11-10-2018 AMD27_02735 c7e44c3c6bc90468a681747e991f431f 243 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 65 112 5.1E-7 T 11-10-2018 IPR006260 TonB/TolA, C-terminal AMD27_02735 c7e44c3c6bc90468a681747e991f431f 243 Gene3D G3DSA:3.30.1150.10 15 130 1.5E-5 T 11-10-2018 AMD27_07010 c5f8a0edac7a4504f50c0b39f30b483d 829 Pfam PF13550 Putative phage tail protein 230 411 1.3E-34 T 11-10-2018 IPR032876 Tip attachment protein J AMD27_07010 c5f8a0edac7a4504f50c0b39f30b483d 829 Gene3D G3DSA:2.60.40.10 720 815 7.2E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_07010 c5f8a0edac7a4504f50c0b39f30b483d 829 SUPERFAMILY SSF49265 669 822 5.54E-9 T 11-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 AMD27_07010 c5f8a0edac7a4504f50c0b39f30b483d 829 SMART SM00060 732 814 1.5E-4 T 11-10-2018 IPR003961 Fibronectin type III GO:0005515 AMD27_07010 c5f8a0edac7a4504f50c0b39f30b483d 829 SMART SM00060 642 722 19.0 T 11-10-2018 IPR003961 Fibronectin type III GO:0005515 AMD27_07970 47e79d448a5447fd8add55acdac27bf4 372 Gene3D G3DSA:1.10.3290.10 25 292 2.0E-43 T 11-10-2018 IPR036597 Fido-like domain superfamily AMD27_07970 47e79d448a5447fd8add55acdac27bf4 372 Pfam PF02661 Fic/DOC family 112 224 7.1E-16 T 11-10-2018 IPR003812 Fido domain AMD27_07970 47e79d448a5447fd8add55acdac27bf4 372 SUPERFAMILY SSF140931 98 294 7.72E-38 T 11-10-2018 IPR036597 Fido-like domain superfamily AMD27_07970 47e79d448a5447fd8add55acdac27bf4 372 Pfam PF13776 Domain of unknown function (DUF4172) 4 83 1.3E-22 T 11-10-2018 IPR025230 Domain of unknown function DUF4172 AMD27_07970 47e79d448a5447fd8add55acdac27bf4 372 SUPERFAMILY SSF46785 293 369 2.68E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12635 7d2f326a1bf85fc3f31ba587bda16921 152 SUPERFAMILY SSF161098 9 98 7.85E-5 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_15020 a61cebf61e22d33395b6fd0a59792fee 291 Pfam PF16956 Putative general bacterial porin 1 289 2.5E-20 T 11-10-2018 IPR031593 Putative general bacterial porin AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 116 3.7E-9 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 81 101 2.6E-5 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 260 282 2.6E-5 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 798 924 3.5E-34 T 11-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 Pfam PF13244 Domain of unknown function (DUF4040) 622 685 4.4E-18 T 11-10-2018 IPR025383 Domain of unknown function DUF4040 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 Pfam PF00361 Proton-conducting membrane transporter 130 411 6.7E-64 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 5.2E-37 T 11-10-2018 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 5.2E-37 T 11-10-2018 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 5.2E-37 T 11-10-2018 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 5.2E-37 T 11-10-2018 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 5.2E-37 T 11-10-2018 AMD27_14560 5a8be206914819e1b6b75a9730cf42f5 945 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 5.2E-37 T 11-10-2018 AMD27_02490 b8c9130ad023963873af393c361035fa 257 Gene3D G3DSA:3.40.50.720 3 257 8.4E-90 T 11-10-2018 AMD27_02490 b8c9130ad023963873af393c361035fa 257 Pfam PF00899 ThiF family 21 252 7.5E-37 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMD27_02490 b8c9130ad023963873af393c361035fa 257 SUPERFAMILY SSF69572 9 249 3.92E-59 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:3.30.300.30 431 531 9.4E-12 T 11-10-2018 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:3.30.300.30 836 931 3.5E-10 T 11-10-2018 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:3.40.50.1820 1019 1283 1.9E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 ProSitePatterns PS00455 Putative AMP-binding domain signature. 176 187 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:3.40.109.10 532 722 1.1E-12 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 SUPERFAMILY SSF53474 1009 1279 1.04E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Pfam PF00975 Thioesterase domain 1030 1277 1.6E-20 T 11-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Pfam PF00550 Phosphopantetheine attachment site 945 1005 4.6E-12 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:3.40.50.12780 20 430 3.0E-115 T 11-10-2018 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 SUPERFAMILY SSF56801 26 955 2.75E-132 T 11-10-2018 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 55 461 4.3E-115 T 11-10-2018 IPR010071 Amino acid adenylation domain AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Gene3D G3DSA:1.10.1200.10 932 1017 1.3E-19 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 SUPERFAMILY SSF47336 936 1005 3.66E-16 T 11-10-2018 IPR036736 ACP-like superfamily AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 Pfam PF00501 AMP-binding enzyme 34 437 3.5E-98 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_12430 71aa95f47d38814dda8ed3e185b17da7 1291 SMART SM00823 Phosphopantetheine attachment site 943 1012 0.0034 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMD27_09295 da62f1d1c8fec407d919622657b2eec0 271 PIRSF PIRSF018982 2 264 2.0E-91 T 11-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AMD27_09295 da62f1d1c8fec407d919622657b2eec0 271 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 16 253 2.7E-89 T 11-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AMD27_09295 da62f1d1c8fec407d919622657b2eec0 271 Gene3D G3DSA:3.40.50.11240 71 252 5.0E-62 T 11-10-2018 AMD27_09295 da62f1d1c8fec407d919622657b2eec0 271 Gene3D G3DSA:1.10.30.40 7 60 1.1E-10 T 11-10-2018 AMD27_13105 2f63f9b1bba32bea9f6a61357a6e3bca 275 Pfam PF05944 Phage small terminase subunit 62 156 2.0E-26 T 11-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 AMD27_09045 df24ba882e0880f18e8793afd8102659 299 Gene3D G3DSA:3.40.190.10 94 294 2.4E-56 T 11-10-2018 AMD27_09045 df24ba882e0880f18e8793afd8102659 299 Gene3D G3DSA:1.10.10.10 3 93 1.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09045 df24ba882e0880f18e8793afd8102659 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 1.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_09045 df24ba882e0880f18e8793afd8102659 299 Gene3D G3DSA:3.40.190.10 166 267 2.4E-56 T 11-10-2018 AMD27_09045 df24ba882e0880f18e8793afd8102659 299 SUPERFAMILY SSF46785 4 89 1.27E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_09045 df24ba882e0880f18e8793afd8102659 299 SUPERFAMILY SSF53850 89 297 1.24E-41 T 11-10-2018 AMD27_09045 df24ba882e0880f18e8793afd8102659 299 Pfam PF03466 LysR substrate binding domain 89 296 3.4E-40 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 SUPERFAMILY SSF53681 1 116 3.71E-36 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 SUPERFAMILY SSF53681 119 228 4.41E-32 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 Gene3D G3DSA:3.40.50.1860 104 214 4.3E-82 T 11-10-2018 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 6.7E-67 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 1.6E-56 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 Gene3D G3DSA:3.40.50.1860 4 222 4.3E-82 T 11-10-2018 AMD27_11180 70b28077697593ddda2c6d654fc65a98 232 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 192 202 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMD27_08635 da8afb6b585f93a459b8c49c4c96e34b 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 43 92 1.2E-16 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 73 340 1.7E-29 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 368 598 5.6E-46 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 Gene3D G3DSA:2.70.150.20 91 209 4.1E-23 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 SUPERFAMILY SSF56784 292 555 4.18E-41 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 Pfam PF00702 haloacid dehalogenase-like hydrolase 300 526 1.7E-37 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 153 167 1.8E-22 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 512 531 1.8E-22 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 304 318 1.8E-22 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 459 469 1.8E-22 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 535 547 1.8E-22 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 SUPERFAMILY SSF81653 113 206 2.22E-17 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 Gene3D G3DSA:3.40.1110.10 318 442 9.5E-42 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 13 676 38.14 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 SUPERFAMILY SSF81665 34 661 2.09E-9 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 306 312 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 Pfam PF00122 E1-E2 ATPase 109 283 7.8E-30 T 11-10-2018 AMD27_06395 ae50e4b0f8dae06422a4241cb8e62357 678 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 19 672 2.6E-284 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 Gene3D G3DSA:3.40.30.10 1 108 1.2E-34 T 11-10-2018 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 PIRSF PIRSF000077 2 108 8.8E-40 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-7 T 11-10-2018 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-7 T 11-10-2018 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-7 T 11-10-2018 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 3.3E-36 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 SUPERFAMILY SSF52833 3 107 5.18E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_02800 94a8262504ffcaf0a555dd348be811aa 108 Pfam PF00085 Thioredoxin 5 106 7.5E-35 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMD27_05415 318053f2620bdab2dc182c80fff54bec 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 83 1.2E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_05415 318053f2620bdab2dc182c80fff54bec 220 Gene3D G3DSA:1.10.357.10 97 220 1.3E-26 T 11-10-2018 AMD27_05415 318053f2620bdab2dc182c80fff54bec 220 SUPERFAMILY SSF48498 106 218 3.42E-25 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMD27_05415 318053f2620bdab2dc182c80fff54bec 220 SUPERFAMILY SSF46689 25 91 3.18E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05415 318053f2620bdab2dc182c80fff54bec 220 Gene3D G3DSA:1.10.10.60 24 93 6.9E-26 T 11-10-2018 AMD27_02065 8119b51ea73125ab2dfe2ebd349881a1 375 Gene3D G3DSA:3.60.10.10 100 321 2.5E-22 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_02065 8119b51ea73125ab2dfe2ebd349881a1 375 SUPERFAMILY SSF56219 101 319 2.88E-32 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_02065 8119b51ea73125ab2dfe2ebd349881a1 375 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 118 312 4.6E-15 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 639 6.4E-24 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 SUPERFAMILY SSF51905 472 631 3.97E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 Gene3D G3DSA:3.50.50.60 473 629 1.7E-106 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 332 6.1E-76 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 Gene3D G3DSA:3.40.50.720 377 670 1.7E-106 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 SUPERFAMILY SSF51395 3 364 3.4E-109 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 SUPERFAMILY SSF51971 335 519 2.35E-40 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 379 398 3.4E-12 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 518 3.4E-12 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 461 479 3.4E-12 T 11-10-2018 AMD27_11015 f894133deb361a30f5de5fd745a169c0 677 Gene3D G3DSA:3.20.20.70 4 370 5.3E-123 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_13155 c1aa30e9954902f3ce34e83eb761527d 298 Pfam PF04865 Baseplate J-like protein 115 254 6.2E-19 T 11-10-2018 IPR006949 Baseplate protein J-like AMD27_13155 c1aa30e9954902f3ce34e83eb761527d 298 PIRSF PIRSF020481 3 296 2.0E-93 T 11-10-2018 IPR014507 Baseplate assembly protein J, predicted AMD27_02320 9d87a00f92d526067affafece655cdec 208 SUPERFAMILY SSF52972 7 206 2.3E-64 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_02320 9d87a00f92d526067affafece655cdec 208 Gene3D G3DSA:3.90.950.10 8 208 1.4E-68 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMD27_02320 9d87a00f92d526067affafece655cdec 208 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 12 206 1.1E-54 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMD27_02320 9d87a00f92d526067affafece655cdec 208 Hamap MF_01405 dITP/XTP pyrophosphatase. 10 208 47.823 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 AMD27_02320 9d87a00f92d526067affafece655cdec 208 Pfam PF01725 Ham1 family 12 203 7.6E-53 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Gene3D G3DSA:3.10.20.310 412 485 3.2E-7 T 11-10-2018 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Pfam PF01103 Surface antigen 606 912 9.0E-36 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Gene3D G3DSA:2.40.160.50 576 914 3.3E-89 T 11-10-2018 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Pfam PF07244 Surface antigen variable number repeat 331 406 2.1E-5 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Pfam PF17243 POTRA domain TamA domain 1 254 321 5.9E-9 T 11-10-2018 IPR035243 TamA, POTRA domain 1 AMD27_09805 5054c5af0bb5852d0786d45c0683a3ad 914 Gene3D G3DSA:3.10.20.310 324 411 3.1E-16 T 11-10-2018 AMD27_09535 ab2945d9cedd691dd913a0ec7f4c29a7 252 Pfam PF03591 AzlC protein 24 164 2.7E-33 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease AMD27_05965 e7f7c74ccc2ee96d29af55242109b024 408 Gene3D G3DSA:3.90.1150.10 27 387 3.0E-133 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_05965 e7f7c74ccc2ee96d29af55242109b024 408 SUPERFAMILY SSF53383 4 392 7.34E-116 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05965 e7f7c74ccc2ee96d29af55242109b024 408 Pfam PF00155 Aminotransferase class I and II 32 385 1.7E-73 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_05965 e7f7c74ccc2ee96d29af55242109b024 408 Gene3D G3DSA:3.40.640.10 64 286 3.0E-133 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_05965 e7f7c74ccc2ee96d29af55242109b024 408 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 SUPERFAMILY SSF54523 15 114 2.67E-18 T 11-10-2018 AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 34 9.2E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 PRINTS PR00813 Bacterial general secretion pathway protein G signature 50 68 1.1E-10 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 PRINTS PR00813 Bacterial general secretion pathway protein G signature 14 39 1.1E-10 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 Gene3D G3DSA:3.30.700.10 15 176 1.8E-20 T 11-10-2018 AMD27_01655 0c352112fc2364d0e2330ce98badf58e 178 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 35 6.4E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_16935 a354839b0539c4110d59668a8824658f 203 Gene3D G3DSA:3.30.70.1210 81 201 2.1E-7 T 11-10-2018 AMD27_16935 a354839b0539c4110d59668a8824658f 203 Pfam PF08798 CRISPR associated protein 103 199 5.0E-8 T 11-10-2018 IPR010179 CRISPR-associated protein Cse3 AMD27_16935 a354839b0539c4110d59668a8824658f 203 SUPERFAMILY SSF117987 114 199 3.14E-7 T 11-10-2018 AMD27_10570 60660c50d28397e941db46ebe61c2c7b 320 Pfam PF08496 Peptidase family S49 N-terminal 10 115 1.5E-32 T 11-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 AMD27_10570 60660c50d28397e941db46ebe61c2c7b 320 SUPERFAMILY SSF52096 55 256 5.42E-23 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_10570 60660c50d28397e941db46ebe61c2c7b 320 Gene3D G3DSA:3.90.226.10 92 257 7.6E-38 T 11-10-2018 AMD27_10570 60660c50d28397e941db46ebe61c2c7b 320 Pfam PF01343 Peptidase family S49 119 263 7.2E-40 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMD27_10570 60660c50d28397e941db46ebe61c2c7b 320 Gene3D G3DSA:3.40.1750.20 159 223 7.6E-38 T 11-10-2018 AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 SMART SM00470 39 131 3.5E-34 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 Gene3D G3DSA:1.10.10.2830 118 231 2.2E-37 T 11-10-2018 AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 Pfam PF02195 ParB-like nuclease domain 40 131 1.1E-27 T 11-10-2018 IPR003115 ParB/Sulfiredoxin AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 215 5.2E-60 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 SUPERFAMILY SSF110849 39 133 2.62E-28 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 SUPERFAMILY SSF109709 124 232 7.85E-35 T 11-10-2018 AMD27_09675 574d43d19bb9e925a521abad0e5fd443 296 Gene3D G3DSA:3.90.1530.30 52 117 1.5E-28 T 11-10-2018 AMD27_03185 132761b93803f97ee9990e79ec818042 335 Pfam PF05036 Sporulation related domain 254 327 8.3E-16 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMD27_03185 132761b93803f97ee9990e79ec818042 335 Gene3D G3DSA:3.30.70.1070 249 321 1.7E-7 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMD27_03185 132761b93803f97ee9990e79ec818042 335 SUPERFAMILY SSF110997 253 326 2.88E-13 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMD27_09460 6af0bbcb164e7e7df10995cba969f1fb 187 SMART SM00563 29 142 1.2E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_09460 6af0bbcb164e7e7df10995cba969f1fb 187 Pfam PF01553 Acyltransferase 16 138 5.8E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_09460 6af0bbcb164e7e7df10995cba969f1fb 187 SUPERFAMILY SSF69593 17 138 1.09E-17 T 11-10-2018 AMD27_00520 b01da2786ea47f66611581dc923dffd6 211 SUPERFAMILY SSF53474 5 206 4.16E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_00520 b01da2786ea47f66611581dc923dffd6 211 Pfam PF00561 alpha/beta hydrolase fold 128 193 4.4E-9 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_00520 b01da2786ea47f66611581dc923dffd6 211 Gene3D G3DSA:3.40.50.1820 3 209 3.1E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_10955 c9ac9aeba9fd8e384f52f2bdb0e5ee3e 596 Pfam PF02321 Outer membrane efflux protein 102 174 1.5E-5 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_10955 c9ac9aeba9fd8e384f52f2bdb0e5ee3e 596 SUPERFAMILY SSF56954 99 174 3.66E-7 T 11-10-2018 AMD27_10955 c9ac9aeba9fd8e384f52f2bdb0e5ee3e 596 Gene3D G3DSA:1.20.1600.10 85 294 1.9E-5 T 11-10-2018 AMD27_10955 c9ac9aeba9fd8e384f52f2bdb0e5ee3e 596 Pfam PF13332 Haemagluttinin repeat 189 352 9.9E-23 T 11-10-2018 IPR025157 Hemagglutinin repeat AMD27_13635 e427472c7812661542e1bb849f616dde 303 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 2 282 1.2E-59 T 11-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 AMD27_11290 161be03461d367cec188505c4ccdebda 184 Pfam PF01227 GTP cyclohydrolase I 4 180 2.6E-72 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMD27_11290 161be03461d367cec188505c4ccdebda 184 SUPERFAMILY SSF55620 2 181 3.19E-73 T 11-10-2018 AMD27_11290 161be03461d367cec188505c4ccdebda 184 Gene3D G3DSA:1.10.286.10 1 49 5.5E-17 T 11-10-2018 AMD27_11290 161be03461d367cec188505c4ccdebda 184 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 3 180 8.2E-70 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMD27_11290 161be03461d367cec188505c4ccdebda 184 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMD27_11290 161be03461d367cec188505c4ccdebda 184 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 34.59 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMD27_11290 161be03461d367cec188505c4ccdebda 184 Gene3D G3DSA:3.30.1130.10 51 183 2.3E-58 T 11-10-2018 AMD27_11290 161be03461d367cec188505c4ccdebda 184 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMD27_01685 4293ca064254541bacd345d585d6993a 321 Gene3D G3DSA:3.40.50.1820 33 321 7.9E-80 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01685 4293ca064254541bacd345d585d6993a 321 Pfam PF00561 alpha/beta hydrolase fold 41 148 5.7E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_01685 4293ca064254541bacd345d585d6993a 321 SUPERFAMILY SSF53474 37 314 9.36E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 Gene3D G3DSA:1.20.140.10 290 444 1.2E-32 T 11-10-2018 AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 442 2.1E-30 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 180 278 1.6E-15 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 Gene3D G3DSA:2.40.110.20 130 289 5.7E-53 T 11-10-2018 AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 SUPERFAMILY SSF47203 287 444 9.67E-36 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_01945 7754d5e5ec6c37fed95d206988491ed6 558 SUPERFAMILY SSF56645 101 296 2.26E-30 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_16175 9613d3cca763fd3da024ba4504b641d9 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_16175 9613d3cca763fd3da024ba4504b641d9 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 2.0E-14 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_16175 9613d3cca763fd3da024ba4504b641d9 44 Pfam PF00468 Ribosomal protein L34 1 44 4.5E-25 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_16175 9613d3cca763fd3da024ba4504b641d9 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 8.0E-26 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_16175 9613d3cca763fd3da024ba4504b641d9 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.039 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_06420 4de949780bf6079b8b3d795c298400c0 154 Pfam PF03400 IS1 transposase 15 139 2.8E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_06420 4de949780bf6079b8b3d795c298400c0 154 SUPERFAMILY SSF53098 9 134 4.36E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_09925 07629c3816334e9de22c86d7ffc45804 231 Gene3D G3DSA:1.10.3720.10 20 230 7.1E-44 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_09925 07629c3816334e9de22c86d7ffc45804 231 SUPERFAMILY SSF161098 25 223 5.89E-41 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_09925 07629c3816334e9de22c86d7ffc45804 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 220 1.9E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 SUPERFAMILY SSF54211 1 181 1.72E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_00310 52ab86f12818aaf41cce750926319f63 238 Gene3D G3DSA:3.30.230.70 10 237 1.3E-63 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.37 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 SUPERFAMILY SSF55666 154 236 8.77E-24 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site AMD27_00310 52ab86f12818aaf41cce750926319f63 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 224 3.0E-11 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 8.2E-116 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMD27_00310 52ab86f12818aaf41cce750926319f63 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 6.0E-24 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 52 286 2.2E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 5 288 51.67 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Gene3D G3DSA:1.10.601.10 19 129 3.1E-27 T 11-10-2018 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 PRINTS PR00046 Major sigma-70 factor signature 256 271 1.9E-17 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 PRINTS PR00046 Major sigma-70 factor signature 237 249 1.9E-17 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 PRINTS PR00046 Major sigma-70 factor signature 81 94 1.9E-17 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 PRINTS PR00046 Major sigma-70 factor signature 271 282 1.9E-17 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 81 94 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 SUPERFAMILY SSF88659 197 287 2.43E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 19 287 6.3E-122 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 SUPERFAMILY SSF88946 19 126 1.31E-39 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Gene3D G3DSA:1.10.10.10 213 288 2.8E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Pfam PF00140 Sigma-70 factor, region 1.2 20 44 3.6E-5 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Pfam PF04545 Sigma-70, region 4 233 283 1.3E-14 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 Pfam PF04542 Sigma-70 region 2 57 126 2.7E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMD27_10120 8d37878b001c4c47eb7989b2f64ce0ba 289 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 256 282 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMD27_08615 c1f05c1f3e34d7016e87b36b7f973d3f 390 SUPERFAMILY SSF103473 10 380 2.22E-45 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_08615 c1f05c1f3e34d7016e87b36b7f973d3f 390 Pfam PF12832 MFS_1 like family 8 362 3.9E-83 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain AMD27_08615 c1f05c1f3e34d7016e87b36b7f973d3f 390 Gene3D G3DSA:1.20.1250.20 192 382 1.4E-35 T 11-10-2018 AMD27_08615 c1f05c1f3e34d7016e87b36b7f973d3f 390 PIRSF PIRSF004925 1 389 4.8E-104 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter AMD27_08615 c1f05c1f3e34d7016e87b36b7f973d3f 390 Gene3D G3DSA:1.20.1250.20 8 191 1.9E-23 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 3.1E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SMART SM00929 88 128 1.8E-17 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SUPERFAMILY SSF54862 82 213 1.76E-31 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 126 6.6E-14 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SUPERFAMILY SSF53706 219 678 2.24E-78 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 77 3.4E-11 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Gene3D G3DSA:2.20.25.90 221 275 3.0E-13 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 644 1.2E-198 T 11-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Pfam PF00384 Molybdopterin oxidoreductase 310 627 2.2E-7 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Gene3D G3DSA:3.40.50.740 477 678 1.3E-12 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SMART SM00926 221 275 1.4E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Gene3D G3DSA:2.40.40.20 797 888 2.9E-5 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SUPERFAMILY SSF54292 1 77 3.44E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 Gene3D G3DSA:3.10.20.740 1 128 1.0E-28 T 11-10-2018 AMD27_12350 c49de3e7a5095bb4fe0e8c263031a12c 893 SUPERFAMILY SSF50692 798 877 4.52E-9 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 108 4.6E-21 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 Pfam PF01872 RibD C-terminal domain 156 354 2.9E-42 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 Gene3D G3DSA:3.40.430.10 150 365 8.7E-72 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 59 97 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 155 357 2.5E-50 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 16 355 1.9E-120 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 Gene3D G3DSA:3.40.140.10 2 149 3.8E-49 T 11-10-2018 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 PIRSF PIRSF006769 7 363 1.9E-125 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 SUPERFAMILY SSF53927 12 153 3.19E-47 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMD27_00925 bdb3da3f067a6c4c0e762557e646c20e 365 SUPERFAMILY SSF53597 153 356 9.0E-54 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 SUPERFAMILY SSF54211 604 796 5.31E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Pfam PF13654 AAA domain 65 580 9.5E-167 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Gene3D G3DSA:3.40.50.300 46 208 2.9E-26 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Gene3D G3DSA:3.40.50.300 282 489 1.9E-55 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Gene3D G3DSA:1.10.8.60 490 578 3.7E-11 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 690 796 7.9E-10 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 747 765 2.5E-10 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 687 706 2.5E-10 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 717 736 2.5E-10 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 101 120 2.5E-10 T 11-10-2018 AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 SUPERFAMILY SSF52540 69 591 4.05E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10465 7c2db89aad12ab8199a6f69d9f57378b 883 Gene3D G3DSA:3.30.230.10 583 819 4.2E-89 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_12700 2c96b274552a13d88976e38c92ea7255 221 Gene3D G3DSA:3.30.2350.10 6 220 8.1E-66 T 11-10-2018 AMD27_12700 2c96b274552a13d88976e38c92ea7255 221 SUPERFAMILY SSF55120 11 220 4.0E-57 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_12700 2c96b274552a13d88976e38c92ea7255 221 Pfam PF00849 RNA pseudouridylate synthase 24 171 5.2E-27 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMD27_00030 a3f6fba764b73e76b7a4ef4a4dff9c8b 335 SUPERFAMILY SSF53850 102 210 1.74E-5 T 11-10-2018 AMD27_00030 a3f6fba764b73e76b7a4ef4a4dff9c8b 335 Gene3D G3DSA:3.40.190.170 34 243 2.5E-10 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMD27_10760 627a9f5250d3a32201a03e61e56e878a 360 SUPERFAMILY SSF56925 130 360 4.19E-18 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMD27_10760 627a9f5250d3a32201a03e61e56e878a 360 Pfam PF03922 OmpW family 119 360 9.0E-19 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AMD27_15865 9315b605de6242d0297bd61d4aee3299 270 SUPERFAMILY SSF161098 68 249 6.41E-35 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_15865 9315b605de6242d0297bd61d4aee3299 270 Gene3D G3DSA:1.10.3720.10 63 259 4.0E-27 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_15865 9315b605de6242d0297bd61d4aee3299 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 259 3.4E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 37.449 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 SUPERFAMILY SSF47648 1 70 7.06E-20 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 337 3.2E-115 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 Gene3D G3DSA:3.40.1030.10 71 348 3.3E-99 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 SUPERFAMILY SSF52418 75 342 1.31E-84 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 Pfam PF02885 Glycosyl transferase family, helical bundle domain 9 66 2.4E-18 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 Pfam PF00591 Glycosyl transferase family, a/b domain 76 330 3.0E-96 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_11275 d62b6aa413ba5779ee7aa44f4aaaff72 348 Gene3D G3DSA:1.20.970.10 1 70 1.7E-30 T 11-10-2018 AMD27_15340 f4b2c6449008fddb1cf34ede2bbc9b68 62 Pfam PF12088 Protein of unknown function (DUF3565) 6 61 1.5E-23 T 11-10-2018 IPR021948 Protein of unknown function DUF3565 AMD27_14730 f7615c723c7e751840a157413e4a45de 295 Pfam PF00106 short chain dehydrogenase 16 206 9.1E-53 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 6.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 6.7E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 3.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 3.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 3.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_14730 f7615c723c7e751840a157413e4a45de 295 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_14730 f7615c723c7e751840a157413e4a45de 295 SUPERFAMILY SSF51735 12 237 7.39E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_14730 f7615c723c7e751840a157413e4a45de 295 Gene3D G3DSA:3.40.50.720 1 265 5.1E-63 T 11-10-2018 AMD27_14730 f7615c723c7e751840a157413e4a45de 295 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 9.1E-4 T 11-10-2018 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 Pfam PF13531 Bacterial extracellular solute-binding protein 36 283 7.0E-43 T 11-10-2018 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 Gene3D G3DSA:3.40.190.10 30 298 2.3E-128 T 11-10-2018 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 149 157 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 17 329 2.0E-139 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 Gene3D G3DSA:3.40.190.10 118 328 2.3E-128 T 11-10-2018 AMD27_05820 bdeb9cfef96a70f93b8dd7fdbb0e5cf1 336 SUPERFAMILY SSF53850 24 329 3.53E-85 T 11-10-2018 AMD27_12560 245ca760a863e0ae97c47e71777514c6 186 SUPERFAMILY SSF52833 39 184 4.75E-46 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_12560 245ca760a863e0ae97c47e71777514c6 186 Gene3D G3DSA:3.40.30.10 35 185 2.7E-46 T 11-10-2018 AMD27_12560 245ca760a863e0ae97c47e71777514c6 186 PIRSF PIRSF000239 33 184 6.4E-32 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_12560 245ca760a863e0ae97c47e71777514c6 186 Pfam PF00578 AhpC/TSA family 40 164 1.1E-38 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 Gene3D G3DSA:3.40.50.720 1 163 2.8E-59 T 11-10-2018 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 2.7E-50 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 SUPERFAMILY SSF51735 1 161 2.3E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_09445 3d4bf67d156a61361455e19785d19750 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 Gene3D G3DSA:1.10.1040.10 164 293 9.7E-46 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 SUPERFAMILY SSF48179 162 291 2.04E-38 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 289 3.8E-35 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 5 291 1.8E-118 T 11-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 AMD27_09445 3d4bf67d156a61361455e19785d19750 295 PIRSF PIRSF000103 1 294 8.4E-78 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 Gene3D G3DSA:3.90.1150.10 104 469 2.9E-83 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 SUPERFAMILY SSF53383 103 470 1.65E-82 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 2.2E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 Gene3D G3DSA:3.40.640.10 145 363 2.9E-83 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 Pfam PF00155 Aminotransferase class I and II 121 463 4.2E-36 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 SUPERFAMILY SSF46785 4 71 8.89E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 SMART SM00345 8 67 2.1E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_15805 3df1d249937e94467eb8d3880c37d800 475 Gene3D G3DSA:1.10.10.10 2 68 1.3E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07290 deb03720e1004258b4a98e060981d315 290 Pfam PF10977 Protein of unknown function (DUF2797) 47 285 2.5E-90 T 11-10-2018 IPR021246 Protein of unknown function DUF2797 AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 SUPERFAMILY SSF52540 11 243 5.89E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 243 2.8E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 Gene3D G3DSA:3.40.50.300 9 248 3.1E-69 T 11-10-2018 AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 10 247 1.9E-119 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 SMART SM00382 35 220 1.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_06115 5e92bd3f8528b1d4870cb9ed36bd2556 248 Pfam PF00005 ABC transporter 26 173 2.4E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_13135 7810b001f49a4a9c4e19464ff131dde5 145 Pfam PF05069 Phage virion morphogenesis family 6 142 6.1E-28 T 11-10-2018 IPR006522 Phage virion morphogensis protein AMD27_13135 7810b001f49a4a9c4e19464ff131dde5 145 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 7 142 1.9E-22 T 11-10-2018 IPR006522 Phage virion morphogensis protein AMD27_05595 d7e37c5aa63352808948cd838235ba7a 310 Pfam PF13737 Transposase DDE domain 22 130 1.3E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_05430 d7e37c5aa63352808948cd838235ba7a 310 Pfam PF13737 Transposase DDE domain 22 130 1.3E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_08020 6ba4bb649ef6e5687e449a797639efae 225 Pfam PF06912 Protein of unknown function (DUF1275) 14 210 2.3E-30 T 11-10-2018 IPR010699 Protein of unknown function DUF1275 AMD27_04540 efc1b126d5893711fb313fbcc9baed68 184 ProSitePatterns PS00201 Flavodoxin signature. 10 26 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMD27_04540 efc1b126d5893711fb313fbcc9baed68 184 SUPERFAMILY SSF52218 8 183 6.55E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_04540 efc1b126d5893711fb313fbcc9baed68 184 Gene3D G3DSA:3.40.50.360 2 183 1.5E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_04540 efc1b126d5893711fb313fbcc9baed68 184 Pfam PF03358 NADPH-dependent FMN reductase 50 121 2.9E-13 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMD27_02505 bf3d38d9ec08ebfd7a7695a23d50e321 385 PIRSF PIRSF020979 8 383 1.1E-117 T 11-10-2018 IPR011215 Phosphoribosyl transferase AMD27_02505 bf3d38d9ec08ebfd7a7695a23d50e321 385 Pfam PF15608 PELOTA RNA binding domain 302 381 1.4E-25 T 11-10-2018 IPR028157 PELOTA RNA-binding domain AMD27_02505 bf3d38d9ec08ebfd7a7695a23d50e321 385 Pfam PF11202 Phosphoribosyl transferase (PRTase) 18 274 4.5E-83 T 11-10-2018 IPR011215 Phosphoribosyl transferase AMD27_01390 f7297a568de3b20145e737cbcfd18d1f 259 Gene3D G3DSA:3.30.450.40 77 243 8.9E-20 T 11-10-2018 IPR029016 GAF-like domain superfamily AMD27_01390 f7297a568de3b20145e737cbcfd18d1f 259 SUPERFAMILY SSF46785 4 74 7.18E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_01390 f7297a568de3b20145e737cbcfd18d1f 259 Pfam PF01614 Bacterial transcriptional regulator 128 246 2.2E-9 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMD27_01390 f7297a568de3b20145e737cbcfd18d1f 259 Gene3D G3DSA:1.10.10.10 2 76 4.9E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_01390 f7297a568de3b20145e737cbcfd18d1f 259 SUPERFAMILY SSF55781 80 246 2.75E-21 T 11-10-2018 AMD27_06715 6be3cbbba19529a094485d5b673f339e 145 Pfam PF04940 Sensors of blue-light using FAD 1 94 2.5E-24 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMD27_06715 6be3cbbba19529a094485d5b673f339e 145 Gene3D G3DSA:3.30.70.100 1 138 4.6E-31 T 11-10-2018 AMD27_06715 6be3cbbba19529a094485d5b673f339e 145 SMART SM01034 1 95 1.4E-28 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMD27_06715 6be3cbbba19529a094485d5b673f339e 145 SUPERFAMILY SSF54975 1 132 3.92E-31 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMD27_16305 1b74c66945244c0b2cd51e27731f86d6 221 Pfam PF08378 Nuclease-related domain 32 131 1.4E-22 T 11-10-2018 IPR011528 Nuclease-related domain, NERD AMD27_05825 e853f41e7059fc33a7089437c75fdc27 273 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 8 262 4.1E-64 T 11-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 AMD27_05825 e853f41e7059fc33a7089437c75fdc27 273 Gene3D G3DSA:3.20.10.10 125 263 4.4E-34 T 11-10-2018 AMD27_05825 e853f41e7059fc33a7089437c75fdc27 273 Pfam PF01063 Amino-transferase class IV 25 245 2.0E-38 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMD27_05825 e853f41e7059fc33a7089437c75fdc27 273 SUPERFAMILY SSF56752 13 265 5.89E-49 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMD27_05825 e853f41e7059fc33a7089437c75fdc27 273 Gene3D G3DSA:3.30.470.10 4 108 2.0E-19 T 11-10-2018 AMD27_07610 e85a3aa663d8125af9f962a0248c5954 320 Pfam PF00682 HMGL-like 18 289 1.6E-46 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMD27_07610 e85a3aa663d8125af9f962a0248c5954 320 Gene3D G3DSA:3.20.20.70 12 310 3.5E-122 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07610 e85a3aa663d8125af9f962a0248c5954 320 SUPERFAMILY SSF51569 13 304 6.04E-66 T 11-10-2018 AMD27_03150 9015172f53df34b28f8d2511e57d7491 291 Pfam PF10118 Predicted metal-dependent hydrolase 15 260 4.0E-68 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_03150 9015172f53df34b28f8d2511e57d7491 291 PIRSF PIRSF007580 1 279 2.2E-64 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_03150 9015172f53df34b28f8d2511e57d7491 291 SUPERFAMILY SSF47240 9 209 2.94E-5 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 Gene3D G3DSA:3.20.20.80 308 667 4.3E-130 T 11-10-2018 AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 319 643 6.8E-141 T 11-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 Gene3D G3DSA:3.20.20.370 33 302 2.9E-72 T 11-10-2018 AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 43 663 1.4E-258 T 11-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 Pfam PF01522 Polysaccharide deacetylase 98 263 1.0E-23 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMD27_11955 02a516d48c4f9de01fdacac325f53261 670 SUPERFAMILY SSF88713 59 265 1.26E-34 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 SMART SM00267 234 403 2.5E-61 T 11-10-2018 IPR000160 GGDEF domain AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 Pfam PF00990 Diguanylate cyclase, GGDEF domain 246 395 1.7E-47 T 11-10-2018 IPR000160 GGDEF domain AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 SUPERFAMILY SSF55073 250 402 8.63E-43 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 Gene3D G3DSA:3.30.70.270 230 403 7.4E-51 T 11-10-2018 AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 243 397 5.8E-39 T 11-10-2018 IPR000160 GGDEF domain AMD27_03245 ba2d96e60359f217d62d1060f4215fef 405 Pfam PF17152 Periplasmic sensor domain 43 141 4.7E-15 T 11-10-2018 IPR033417 Periplasmic sensor domain CHASE8 AMD27_14925 4d422c65fb5cf35ac1691a3c04264827 432 SUPERFAMILY SSF51905 2 406 1.12E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14925 4d422c65fb5cf35ac1691a3c04264827 432 Pfam PF13450 NAD(P)-binding Rossmann-like domain 5 59 7.1E-9 T 11-10-2018 AMD27_14925 4d422c65fb5cf35ac1691a3c04264827 432 Gene3D G3DSA:3.50.50.60 1 278 8.1E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_04340 1e353785febc327e5e8fe638b9c93f8a 159 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 156 31.401 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMD27_04340 1e353785febc327e5e8fe638b9c93f8a 159 Gene3D G3DSA:3.40.1280.10 1 159 1.3E-58 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_04340 1e353785febc327e5e8fe638b9c93f8a 159 Pfam PF00588 SpoU rRNA Methylase family 2 147 9.2E-35 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMD27_04340 1e353785febc327e5e8fe638b9c93f8a 159 SUPERFAMILY SSF75217 2 157 4.71E-42 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_04340 1e353785febc327e5e8fe638b9c93f8a 159 PIRSF PIRSF029256 1 159 5.7E-60 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMD27_10340 ad7e800c3e208b0c77df7b86cc09eb79 438 PIRSF PIRSF005353 1 437 1.0E-183 T 11-10-2018 IPR026033 Purine permease PbuG-like AMD27_10340 ad7e800c3e208b0c77df7b86cc09eb79 438 Pfam PF00860 Permease family 26 397 2.2E-55 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 Gene3D G3DSA:3.20.20.70 2 337 4.5E-142 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 331 9.8E-133 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PIRSF PIRSF001415 2 336 1.5E-140 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 SUPERFAMILY SSF51569 6 335 1.34E-134 T 11-10-2018 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 SMART SM01004 10 333 3.0E-223 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_03735 c7ab85f1e10140597bdd7517dfcf10d4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 8.2E-55 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMD27_10575 1a78667132c72517b99c785b622a8b66 446 Pfam PF01966 HD domain 63 135 4.0E-8 T 11-10-2018 IPR006674 HD domain AMD27_10575 1a78667132c72517b99c785b622a8b66 446 SUPERFAMILY SSF109604 25 385 3.43E-62 T 11-10-2018 AMD27_10575 1a78667132c72517b99c785b622a8b66 446 Gene3D G3DSA:1.10.3410.10 245 356 1.2E-138 T 11-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 AMD27_10575 1a78667132c72517b99c785b622a8b66 446 Gene3D G3DSA:1.10.3550.10 114 429 1.2E-138 T 11-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal AMD27_10575 1a78667132c72517b99c785b622a8b66 446 Gene3D G3DSA:1.10.3210.10 28 244 1.2E-138 T 11-10-2018 AMD27_10575 1a78667132c72517b99c785b622a8b66 446 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 438 8.6E-94 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AMD27_10575 1a78667132c72517b99c785b622a8b66 446 SMART SM00471 59 261 2.2E-7 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_08210 839b4723a2e204b7b10422ccae669759 282 SMART SM01040 12 119 8.6E-18 T 11-10-2018 IPR003497 BRO N-terminal domain AMD27_08210 839b4723a2e204b7b10422ccae669759 282 Pfam PF02498 BRO family, N-terminal domain 17 116 1.7E-12 T 11-10-2018 IPR003497 BRO N-terminal domain AMD27_15345 9919a97b2884c63d8addbcc16f3fe0a3 216 SUPERFAMILY SSF53271 10 199 1.08E-47 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_15345 9919a97b2884c63d8addbcc16f3fe0a3 216 Pfam PF00156 Phosphoribosyl transferase domain 67 164 1.2E-14 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_15345 9919a97b2884c63d8addbcc16f3fe0a3 216 Gene3D G3DSA:3.40.50.2020 7 216 2.4E-74 T 11-10-2018 AMD27_15345 9919a97b2884c63d8addbcc16f3fe0a3 216 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 14 191 1.5E-57 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_15345 9919a97b2884c63d8addbcc16f3fe0a3 216 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 216 32.689 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMD27_09680 54f6c63dc3de14bd5d8dab91a4ee20d9 260 Pfam PF13614 AAA domain 3 177 3.3E-61 T 11-10-2018 IPR025669 AAA domain AMD27_09680 54f6c63dc3de14bd5d8dab91a4ee20d9 260 PIRSF PIRSF009320 2 84 3.1E-16 T 11-10-2018 AMD27_09680 54f6c63dc3de14bd5d8dab91a4ee20d9 260 PIRSF PIRSF009320 86 260 7.2E-10 T 11-10-2018 AMD27_09680 54f6c63dc3de14bd5d8dab91a4ee20d9 260 SUPERFAMILY SSF52540 1 253 1.06E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09680 54f6c63dc3de14bd5d8dab91a4ee20d9 260 Gene3D G3DSA:3.40.50.300 1 260 2.9E-80 T 11-10-2018 AMD27_12830 7d5d7fb5daf5d65edadef001267b9580 169 Pfam PF07566 Domain of Unknown Function (DUF1543) 16 60 5.4E-20 T 11-10-2018 IPR011440 Domain of unknown function DUF1543 AMD27_12830 7d5d7fb5daf5d65edadef001267b9580 169 Gene3D G3DSA:3.50.100.10 67 160 1.3E-23 T 11-10-2018 AMD27_12830 7d5d7fb5daf5d65edadef001267b9580 169 Gene3D G3DSA:3.10.20.10 1 66 9.2E-24 T 11-10-2018 AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 22 651 7.3E-228 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Pfam PF00270 DEAD/DEAH box helicase 276 422 4.5E-18 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 SMART SM00490 493 577 4.0E-21 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Pfam PF00271 Helicase conserved C-terminal domain 465 576 1.5E-17 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 SUPERFAMILY SSF50249 4 167 9.25E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Gene3D G3DSA:2.40.50.140 40 133 2.3E-9 T 11-10-2018 AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Pfam PF17191 RecG wedge domain 6 164 4.3E-21 T 11-10-2018 IPR033454 RecG, wedge domain AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 SUPERFAMILY SSF52540 203 442 6.06E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Gene3D G3DSA:3.40.50.300 198 439 1.8E-83 T 11-10-2018 AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 SMART SM00487 255 448 1.1E-30 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 SUPERFAMILY SSF52540 282 639 3.01E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_14150 c2a8ca1dc1563e24390f5f27e388998c 681 Gene3D G3DSA:3.40.50.300 446 618 4.2E-53 T 11-10-2018 AMD27_04215 a9fa8d797030a07cd5228ec1abf81413 292 Gene3D G3DSA:3.40.50.1580 39 288 8.8E-76 T 11-10-2018 AMD27_04215 a9fa8d797030a07cd5228ec1abf81413 292 Pfam PF01048 Phosphorylase superfamily 42 261 2.1E-38 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMD27_04215 a9fa8d797030a07cd5228ec1abf81413 292 SUPERFAMILY SSF53167 42 266 1.7E-44 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 219 1.8E-117 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 SMART SM00882 6 219 1.2E-74 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 SUPERFAMILY SSF100950 2 219 8.97E-75 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 Gene3D G3DSA:3.40.1080.10 1 218 1.9E-74 T 11-10-2018 AMD27_07835 4483fdd53cf87a3513d6bc2c78340afd 228 Pfam PF01144 Coenzyme A transferase 8 218 1.1E-69 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_05080 10e888791807fb1ddbea063969f804ee 338 Pfam PF01343 Peptidase family S49 147 297 3.2E-36 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMD27_05080 10e888791807fb1ddbea063969f804ee 338 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 82 291 9.1E-47 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMD27_05080 10e888791807fb1ddbea063969f804ee 338 SUPERFAMILY SSF52096 76 283 2.72E-39 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_05080 10e888791807fb1ddbea063969f804ee 338 Gene3D G3DSA:3.90.226.10 85 286 5.2E-64 T 11-10-2018 AMD27_05080 10e888791807fb1ddbea063969f804ee 338 Gene3D G3DSA:3.40.1750.20 186 252 5.2E-64 T 11-10-2018 AMD27_15840 ca9c17d5d0fec1d00f4d09f8d72da66d 131 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 75 129 1.0E-9 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_15840 ca9c17d5d0fec1d00f4d09f8d72da66d 131 Pfam PF11776 Nickel/cobalt transporter regulator 78 127 1.4E-11 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_15840 ca9c17d5d0fec1d00f4d09f8d72da66d 131 Gene3D G3DSA:3.10.450.160 60 131 2.9E-12 T 11-10-2018 AMD27_07620 f10df313d8828d49d73a6bf3cf5fc584 264 Gene3D G3DSA:3.90.226.10 1 201 2.5E-64 T 11-10-2018 AMD27_07620 f10df313d8828d49d73a6bf3cf5fc584 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_07620 f10df313d8828d49d73a6bf3cf5fc584 264 Gene3D G3DSA:1.10.12.10 204 263 3.3E-20 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_07620 f10df313d8828d49d73a6bf3cf5fc584 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 4.8E-50 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_07620 f10df313d8828d49d73a6bf3cf5fc584 264 SUPERFAMILY SSF52096 1 259 3.62E-73 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_14305 cb245d9d18dcf24b68ddcc27280054ae 247 SMART SM00382 30 224 1.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_14305 cb245d9d18dcf24b68ddcc27280054ae 247 Pfam PF00005 ABC transporter 22 172 3.4E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_14305 cb245d9d18dcf24b68ddcc27280054ae 247 Gene3D G3DSA:3.40.50.300 2 246 1.9E-51 T 11-10-2018 AMD27_14305 cb245d9d18dcf24b68ddcc27280054ae 247 SUPERFAMILY SSF52540 4 243 4.5E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00400 29a0c118bd8a62e1de235feacce851a1 293 Gene3D G3DSA:3.90.550.10 3 216 8.8E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00400 29a0c118bd8a62e1de235feacce851a1 293 SUPERFAMILY SSF53448 6 289 8.34E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00400 29a0c118bd8a62e1de235feacce851a1 293 TIGRFAM TIGR01556 rhamnosyltran: rhamnosyltransferase 8 287 4.8E-69 T 11-10-2018 IPR006446 Rhamnosyltransferase AMD27_00400 29a0c118bd8a62e1de235feacce851a1 293 Pfam PF00535 Glycosyl transferase family 2 5 168 4.9E-13 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMD27_10085 6a2fd977735e24406e5b6feb805b4df8 151 SMART SM00855 2 111 7.4E-11 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_10085 6a2fd977735e24406e5b6feb805b4df8 151 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 65 8.8E-12 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_10085 6a2fd977735e24406e5b6feb805b4df8 151 SUPERFAMILY SSF53254 1 126 2.09E-21 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_10085 6a2fd977735e24406e5b6feb805b4df8 151 Gene3D G3DSA:3.40.50.1240 1 146 5.4E-29 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_03495 e51427b1737126aff97c741c55cbb8a8 473 Gene3D G3DSA:1.20.1740.10 15 473 1.7E-60 T 11-10-2018 AMD27_03495 e51427b1737126aff97c741c55cbb8a8 473 PIRSF PIRSF006060 2 473 3.2E-67 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_03495 e51427b1737126aff97c741c55cbb8a8 473 ProSitePatterns PS00218 Amino acid permeases signature. 49 79 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_03495 e51427b1737126aff97c741c55cbb8a8 473 Pfam PF00324 Amino acid permease 24 467 9.9E-102 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_03960 6d469a951b051575c271248825a79874 309 SUPERFAMILY SSF54593 1 294 2.2E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_03960 6d469a951b051575c271248825a79874 309 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 266 2.3E-9 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMD27_03960 6d469a951b051575c271248825a79874 309 Gene3D G3DSA:3.10.180.10 147 292 1.4E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_06585 ce15f4511619904069b8b8c25d07e31f 401 Pfam PF07759 Protein of unknown function (DUF1615) 51 395 2.2E-118 T 11-10-2018 IPR011673 Protein of unknown function DUF1615 AMD27_06585 ce15f4511619904069b8b8c25d07e31f 401 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 23 395 2.0E-145 T 11-10-2018 IPR011673 Protein of unknown function DUF1615 AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 122 217 1.7E-7 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 83 2.3E-7 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 SUPERFAMILY SSF53254 1 222 2.62E-30 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 SMART SM00855 3 176 1.1E-10 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 PIRSF PIRSF000709 1 76 5.9E-4 T 11-10-2018 AMD27_08145 87e61a8d38d877a9f3b36532cfb03670 232 Gene3D G3DSA:3.40.50.1240 1 226 3.6E-28 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_15470 4938a14148cd6af41a3103e87be85641 179 SUPERFAMILY SSF48452 2 175 1.29E-67 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_15470 4938a14148cd6af41a3103e87be85641 179 Gene3D G3DSA:1.20.58.320 1 78 3.2E-26 T 11-10-2018 AMD27_15470 4938a14148cd6af41a3103e87be85641 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 175 8.7E-62 T 11-10-2018 IPR010323 Protein of unknown function DUF924 AMD27_15470 4938a14148cd6af41a3103e87be85641 179 Gene3D G3DSA:1.25.40.10 79 179 3.3E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 SUPERFAMILY SSF103088 147 254 3.66E-32 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 Pfam PF00691 OmpA family 155 249 1.3E-22 T 11-10-2018 IPR006665 OmpA-like domain AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 Gene3D G3DSA:3.30.1330.60 148 256 3.7E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 218 237 6.3E-7 T 11-10-2018 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 200 217 6.3E-7 T 11-10-2018 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 238 256 6.3E-7 T 11-10-2018 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01021 OMPA domain signature 200 216 1.5E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01021 OMPA domain signature 155 177 1.5E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 PRINTS PR01021 OMPA domain signature 185 200 1.5E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_15925 df71473d4f27a2ef64ce3f1d252664b8 256 Gene3D G3DSA:3.40.1520.20 22 147 1.1E-5 T 11-10-2018 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 Pfam PF07650 KH domain 39 110 7.3E-18 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 Gene3D G3DSA:3.30.300.20 18 107 7.9E-26 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.112 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 SUPERFAMILY SSF54821 108 206 1.83E-39 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.1E-93 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 Gene3D G3DSA:3.30.1140.32 108 208 1.7E-44 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 SMART SM00322 60 125 8.1E-6 T 11-10-2018 IPR004087 K Homology domain GO:0003676 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 SUPERFAMILY SSF54814 2 106 4.45E-35 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMD27_14050 64643ec469ffa108691d51efc8f0672a 250 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 8.4E-40 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_13855 baaf5d9b31eb574694b5635920581f54 213 SUPERFAMILY SSF56529 5 200 2.88E-58 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMD27_13855 baaf5d9b31eb574694b5635920581f54 213 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 7 200 8.1E-45 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMD27_13855 baaf5d9b31eb574694b5635920581f54 213 Gene3D G3DSA:3.90.850.10 1 205 6.1E-61 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMD27_02445 4f61ef1230ff728a410b3409720adc25 339 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMD27_02445 4f61ef1230ff728a410b3409720adc25 339 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 337 46.965 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 AMD27_02445 4f61ef1230ff728a410b3409720adc25 339 Gene3D G3DSA:3.20.20.300 1 337 2.7E-109 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMD27_02445 4f61ef1230ff728a410b3409720adc25 339 SUPERFAMILY SSF51445 3 286 2.63E-76 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily AMD27_02445 4f61ef1230ff728a410b3409720adc25 339 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 6 297 3.7E-72 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMD27_06850 6e1f98997f379223783fe4c28f4af0e9 86 SUPERFAMILY SSF46785 7 59 1.64E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_08805 11e45708d9ded3c23dec917310d985f0 221 SUPERFAMILY SSF51735 6 211 2.62E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08805 11e45708d9ded3c23dec917310d985f0 221 Gene3D G3DSA:3.40.50.720 3 220 3.7E-47 T 11-10-2018 AMD27_08805 11e45708d9ded3c23dec917310d985f0 221 Pfam PF08732 HIM1 72 166 3.0E-7 T 11-10-2018 IPR014843 Protein Him1/Fmp52 AMD27_01415 7d788a9b52ebc30bdf6f5d4f066acba1 184 Gene3D G3DSA:3.40.1740.10 1 184 2.3E-71 T 11-10-2018 AMD27_01415 7d788a9b52ebc30bdf6f5d4f066acba1 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 184 32.993 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 AMD27_01415 7d788a9b52ebc30bdf6f5d4f066acba1 184 SUPERFAMILY SSF143456 5 184 6.28E-59 T 11-10-2018 AMD27_01415 7d788a9b52ebc30bdf6f5d4f066acba1 184 Pfam PF02622 Uncharacterized ACR, COG1678 15 171 1.9E-42 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 Gene3D G3DSA:3.30.160.20 160 230 3.0E-16 T 11-10-2018 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 SUPERFAMILY SSF69065 12 164 1.73E-47 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 227 4.6E-69 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 ProSitePatterns PS00517 Ribonuclease III family signature. 43 51 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 Pfam PF00035 Double-stranded RNA binding motif 162 228 3.5E-8 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 SMART SM00358 162 229 8.6E-16 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 Hamap MF_00104 Ribonuclease 3 [rnc]. 13 225 28.318 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 SUPERFAMILY SSF54768 114 228 4.8E-23 T 11-10-2018 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 Gene3D G3DSA:1.10.1520.10 8 154 2.1E-44 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 Pfam PF14622 Ribonuclease-III-like 25 146 1.5E-32 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMD27_05910 f75bd185e4cbfe428bb12798e98a8494 230 SMART SM00535 25 155 2.3E-47 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMD27_08425 8f7ea456d1c0b7973a2ec33fd8283e91 280 SMART SM00507 194 252 4.4E-4 T 11-10-2018 IPR003615 HNH nuclease AMD27_08425 8f7ea456d1c0b7973a2ec33fd8283e91 280 Gene3D G3DSA:3.30.40.60 169 276 1.2E-6 T 11-10-2018 AMD27_08425 8f7ea456d1c0b7973a2ec33fd8283e91 280 Pfam PF01844 HNH endonuclease 206 255 4.0E-9 T 11-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMD27_01580 4c31cfa32139681791fb964051f31251 93 SMART SM01409 8 61 1.9E-18 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMD27_01580 4c31cfa32139681791fb964051f31251 93 SUPERFAMILY SSF63562 1 69 6.8E-26 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMD27_01580 4c31cfa32139681791fb964051f31251 93 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.2E-22 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01580 4c31cfa32139681791fb964051f31251 93 Gene3D G3DSA:3.90.940.10 1 84 1.6E-27 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMD27_01580 4c31cfa32139681791fb964051f31251 93 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.573 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMD27_01580 4c31cfa32139681791fb964051f31251 93 Pfam PF01192 RNA polymerase Rpb6 8 59 3.0E-18 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMD27_14025 7d175bd6047c906261be73d9114d3437 105 Pfam PF00467 KOW motif 6 34 7.1E-7 T 11-10-2018 IPR005824 KOW AMD27_14025 7d175bd6047c906261be73d9114d3437 105 SMART SM00739 3 30 5.3E-6 T 11-10-2018 IPR005824 KOW AMD27_14025 7d175bd6047c906261be73d9114d3437 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 37 100 1.4E-20 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14025 7d175bd6047c906261be73d9114d3437 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_14025 7d175bd6047c906261be73d9114d3437 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 4.8E-36 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14025 7d175bd6047c906261be73d9114d3437 105 SUPERFAMILY SSF50104 3 99 4.51E-30 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMD27_14025 7d175bd6047c906261be73d9114d3437 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 95 19.599 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14025 7d175bd6047c906261be73d9114d3437 105 Gene3D G3DSA:2.30.30.30 1 102 2.3E-35 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 25 41 1.9E-11 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 46 60 1.9E-11 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 188 200 1.9E-11 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 66 79 1.9E-11 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 PIRSF PIRSF000398 17 278 8.3E-49 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 25 250 3.1E-33 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 SUPERFAMILY SSF53335 20 274 9.97E-59 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 Gene3D G3DSA:1.10.1020.10 73 168 9.7E-48 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 Gene3D G3DSA:3.40.50.150 23 245 9.7E-48 T 11-10-2018 AMD27_13140 f1591745bd974ae2f8eeb51b04668db9 278 TIGRFAM TIGR00571 dam: DNA adenine methylase 24 273 3.9E-36 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 PIRSF PIRSF002936 1 304 6.6E-157 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 SUPERFAMILY SSF52402 8 211 1.18E-74 T 11-10-2018 AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 Gene3D G3DSA:3.40.50.620 9 214 7.2E-65 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 31 259 2.5E-64 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 11 304 1.6E-160 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMD27_04200 fb69de7cde755ad2ac2bfd7343d6b084 304 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 6 304 57.914 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 Gene3D G3DSA:1.10.357.10 65 205 3.9E-16 T 11-10-2018 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 Gene3D G3DSA:1.10.10.60 4 61 1.1E-19 T 11-10-2018 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.4E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.4E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 SUPERFAMILY SSF46689 7 86 1.13E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00230 a01f967fea032eb5dae0de750bebb710 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 3.7E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_01605 3884aa4ee4da42008b98559c14e1653a 357 Pfam PF16074 Type IV Pilus-assembly protein W 240 350 2.2E-12 T 11-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 AMD27_01605 3884aa4ee4da42008b98559c14e1653a 357 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.9E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01605 3884aa4ee4da42008b98559c14e1653a 357 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_09580 7e26c59b308818b2b6377d6e3e9fb9fa 229 SUPERFAMILY SSF52540 5 226 1.75E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09580 7e26c59b308818b2b6377d6e3e9fb9fa 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 220 1.5E-69 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMD27_09580 7e26c59b308818b2b6377d6e3e9fb9fa 229 Hamap MF_00238 Cytidylate kinase [cmk]. 4 227 31.464 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMD27_09580 7e26c59b308818b2b6377d6e3e9fb9fa 229 Gene3D G3DSA:3.40.50.300 1 229 1.1E-74 T 11-10-2018 AMD27_09580 7e26c59b308818b2b6377d6e3e9fb9fa 229 Pfam PF02224 Cytidylate kinase 6 223 2.5E-66 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 SMART SM00382 245 368 1.5E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 SUPERFAMILY SSF52540 102 490 4.21E-102 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 Gene3D G3DSA:3.30.450.90 82 217 5.4E-52 T 11-10-2018 AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 8 490 9.6E-208 T 11-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 Pfam PF00437 Type II/IV secretion system protein 119 384 2.8E-88 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 SUPERFAMILY SSF160246 8 70 8.37E-13 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 312 326 - T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_02850 ee4b485c65461e3d77ca0416c17dced7 495 Gene3D G3DSA:3.40.50.300 218 495 1.8E-116 T 11-10-2018 AMD27_12975 0e0cc72915bf4dd63b75be5c346e9b8b 293 PIRSF PIRSF026649 1 286 7.7E-72 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_12975 0e0cc72915bf4dd63b75be5c346e9b8b 293 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 277 2.4E-49 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_09635 808bd0f5841d0efdc158623209499283 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMD27_09635 808bd0f5841d0efdc158623209499283 258 Pfam PF01026 TatD related DNase 3 254 7.4E-71 T 11-10-2018 IPR001130 TatD family GO:0016788 AMD27_09635 808bd0f5841d0efdc158623209499283 258 Gene3D G3DSA:3.20.20.140 1 258 1.0E-85 T 11-10-2018 AMD27_09635 808bd0f5841d0efdc158623209499283 258 SUPERFAMILY SSF51556 2 256 9.99E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_09635 808bd0f5841d0efdc158623209499283 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 255 4.0E-82 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AMD27_09635 808bd0f5841d0efdc158623209499283 258 PIRSF PIRSF005902 1 258 1.0E-71 T 11-10-2018 IPR001130 TatD family GO:0016788 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 5.5E-22 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 162 4.2E-41 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 PIRSF PIRSF000103 1 288 3.5E-60 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 Gene3D G3DSA:1.10.1040.10 165 288 1.9E-30 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 Gene3D G3DSA:3.40.50.720 3 164 2.0E-42 T 11-10-2018 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 SUPERFAMILY SSF48179 163 288 1.47E-28 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_02600 af1d567b06e185c7208126654b57c5ad 288 SUPERFAMILY SSF51735 7 163 1.28E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_12495 6d5bf206a4368e566a142c7320c8563e 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.617 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_12495 6d5bf206a4368e566a142c7320c8563e 60 SUPERFAMILY SSF57829 2 54 1.22E-17 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMD27_12495 6d5bf206a4368e566a142c7320c8563e 60 Pfam PF01783 Ribosomal L32p protein family 2 55 8.6E-20 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_12495 6d5bf206a4368e566a142c7320c8563e 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 53 1.2E-19 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_07440 df5129dcb608ced23a45d4a4fa4d387b 101 Pfam PF05166 YcgL domain 3 84 8.2E-26 T 11-10-2018 IPR027354 YcgL domain AMD27_07440 df5129dcb608ced23a45d4a4fa4d387b 101 SUPERFAMILY SSF160191 1 85 5.36E-25 T 11-10-2018 IPR038068 YcgL-like superfamily AMD27_07440 df5129dcb608ced23a45d4a4fa4d387b 101 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 85 1.0E-23 T 11-10-2018 IPR027354 YcgL domain AMD27_07440 df5129dcb608ced23a45d4a4fa4d387b 101 Hamap MF_01866 Protein YcgL [ycgL]. 1 95 21.806 T 11-10-2018 IPR027354 YcgL domain AMD27_07440 df5129dcb608ced23a45d4a4fa4d387b 101 Gene3D G3DSA:3.10.510.20 1 83 9.1E-26 T 11-10-2018 IPR038068 YcgL-like superfamily AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 Gene3D G3DSA:3.30.930.10 1 305 2.4E-86 T 11-10-2018 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 SUPERFAMILY SSF55681 3 302 9.38E-61 T 11-10-2018 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 2 300 2.4E-113 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 Pfam PF00152 tRNA synthetases class II (D, K and N) 3 302 1.3E-36 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 PRINTS PR00982 Lysyl-tRNA synthetase signature 187 203 6.1E-12 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 PRINTS PR00982 Lysyl-tRNA synthetase signature 10 20 6.1E-12 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 PRINTS PR00982 Lysyl-tRNA synthetase signature 76 93 6.1E-12 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_10890 ca2c378f1ed853cc8f87c51387d0aa7c 305 PRINTS PR00982 Lysyl-tRNA synthetase signature 58 71 6.1E-12 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMD27_10470 ab7a13f3960cde4e1abf87ec20b37085 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 10 105 4.8E-44 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related AMD27_10470 ab7a13f3960cde4e1abf87ec20b37085 113 PIRSF PIRSF005894 2 112 1.2E-46 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AMD27_10470 ab7a13f3960cde4e1abf87ec20b37085 113 SUPERFAMILY SSF52833 7 107 3.24E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_10470 ab7a13f3960cde4e1abf87ec20b37085 113 Gene3D G3DSA:3.40.30.10 6 108 4.3E-30 T 11-10-2018 AMD27_10470 ab7a13f3960cde4e1abf87ec20b37085 113 Pfam PF00462 Glutaredoxin 21 85 1.4E-17 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMD27_15460 d6edab349bbd7edc88bb5a9f11becd1e 165 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 2 165 22.147 T 11-10-2018 IPR022920 Disulphide bond formation protein DsbB AMD27_15460 d6edab349bbd7edc88bb5a9f11becd1e 165 Gene3D G3DSA:1.20.1550.10 1 164 1.5E-49 T 11-10-2018 IPR023380 DsbB-like superfamily AMD27_15460 d6edab349bbd7edc88bb5a9f11becd1e 165 Pfam PF02600 Disulfide bond formation protein DsbB 7 158 6.1E-41 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMD27_15460 d6edab349bbd7edc88bb5a9f11becd1e 165 SUPERFAMILY SSF158442 12 160 7.19E-41 T 11-10-2018 IPR023380 DsbB-like superfamily AMD27_17585 3b882fd4377b1dbab0981817f664a594 535 SUPERFAMILY SSF52540 37 490 6.38E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_17585 3b882fd4377b1dbab0981817f664a594 535 Gene3D G3DSA:3.40.50.300 34 179 2.4E-9 T 11-10-2018 AMD27_17585 3b882fd4377b1dbab0981817f664a594 535 Gene3D G3DSA:3.40.50.300 257 508 6.0E-17 T 11-10-2018 AMD27_17585 3b882fd4377b1dbab0981817f664a594 535 Pfam PF01935 Domain of unknown function DUF87 58 113 7.9E-6 T 11-10-2018 IPR002789 Helicase HerA, central domain AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 Pfam PF02152 Dihydroneopterin aldolase 4 113 3.3E-26 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 SMART SM00905 4 115 2.3E-31 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 114 1.9E-24 T 11-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 TIGRFAM TIGR00526 folB_dom: FolB domain 1 118 1.4E-26 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 Gene3D G3DSA:3.30.1130.10 1 121 2.4E-31 T 11-10-2018 AMD27_09830 f36e57a93623313e3f6170c073fc0fbd 126 SUPERFAMILY SSF55620 1 117 6.67E-28 T 11-10-2018 AMD27_00575 6e490f1a86e6bd115203fe5f7dba12c7 713 Gene3D G3DSA:2.10.70.40 45 93 7.7E-27 T 11-10-2018 AMD27_00575 6e490f1a86e6bd115203fe5f7dba12c7 713 Gene3D G3DSA:1.10.530.10 11 158 7.7E-27 T 11-10-2018 AMD27_00575 6e490f1a86e6bd115203fe5f7dba12c7 713 SMART SM00047 1 168 0.0014 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AMD27_00575 6e490f1a86e6bd115203fe5f7dba12c7 713 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 21 159 2.1E-10 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AMD27_00575 6e490f1a86e6bd115203fe5f7dba12c7 713 Gene3D G3DSA:3.90.1720.10 594 712 1.2E-25 T 11-10-2018 AMD27_10255 b31a9e9583ece39477b893349526a671 349 SUPERFAMILY SSF51430 1 347 8.77E-102 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMD27_10255 b31a9e9583ece39477b893349526a671 349 PRINTS PR00069 Aldo-keto reductase signature 167 184 2.8E-6 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMD27_10255 b31a9e9583ece39477b893349526a671 349 PRINTS PR00069 Aldo-keto reductase signature 116 134 2.8E-6 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMD27_10255 b31a9e9583ece39477b893349526a671 349 Pfam PF00248 Aldo/keto reductase family 15 340 3.3E-66 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMD27_10255 b31a9e9583ece39477b893349526a671 349 Gene3D G3DSA:3.20.20.100 1 349 6.7E-124 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMD27_10260 cf3635d75787b8a953b733f2f87254b5 258 Pfam PF01435 Peptidase family M48 64 246 1.6E-33 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_03435 72c4c85b094061ff8ceb13361c945d00 92 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 5 88 8.3E-19 T 11-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 AMD27_03435 72c4c85b094061ff8ceb13361c945d00 92 Gene3D G3DSA:3.30.310.50 1 92 6.0E-23 T 11-10-2018 AMD27_10025 3103498820d3e03af3ef681f61f3c04b 148 Pfam PF09424 Yqey-like protein 5 147 2.2E-47 T 11-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 AMD27_10025 3103498820d3e03af3ef681f61f3c04b 148 SUPERFAMILY SSF89095 3 147 5.02E-37 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMD27_10025 3103498820d3e03af3ef681f61f3c04b 148 Gene3D G3DSA:1.10.1510.10 1 91 1.0E-25 T 11-10-2018 AMD27_10025 3103498820d3e03af3ef681f61f3c04b 148 Gene3D G3DSA:1.10.10.410 92 148 7.9E-16 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMD27_04180 5d7c3dffb46dbf1092dabb84c817337b 180 SUPERFAMILY SSF53271 7 159 3.69E-30 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_04180 5d7c3dffb46dbf1092dabb84c817337b 180 Gene3D G3DSA:3.40.50.2020 2 172 1.1E-39 T 11-10-2018 AMD27_04180 5d7c3dffb46dbf1092dabb84c817337b 180 Pfam PF00156 Phosphoribosyl transferase domain 55 169 2.0E-15 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMD27_14555 a65bdaa176434358effccf037a4f636a 459 Pfam PF13476 AAA domain 5 224 2.6E-14 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMD27_14555 a65bdaa176434358effccf037a4f636a 459 Gene3D G3DSA:3.40.50.300 1 387 2.2E-22 T 11-10-2018 AMD27_14555 a65bdaa176434358effccf037a4f636a 459 SUPERFAMILY SSF52540 1 393 1.61E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_07675 4bca6773a1d11d9753112bdbc61bdd92 555 SUPERFAMILY SSF53649 237 534 3.05E-23 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMD27_07675 4bca6773a1d11d9753112bdbc61bdd92 555 Gene3D G3DSA:3.40.720.10 224 550 1.9E-87 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMD27_07675 4bca6773a1d11d9753112bdbc61bdd92 555 Pfam PF00884 Sulfatase 241 533 3.6E-51 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMD27_07675 4bca6773a1d11d9753112bdbc61bdd92 555 Pfam PF08019 Domain of unknown function (DUF1705) 62 211 1.9E-39 T 11-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 ProSitePatterns PS00480 Citrate synthase signature. 262 274 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 Gene3D G3DSA:1.10.580.10 33 359 2.2E-120 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 SUPERFAMILY SSF48256 14 370 2.09E-116 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 Pfam PF00285 Citrate synthase, C-terminal domain 13 361 2.0E-107 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 12 379 6.1E-148 T 11-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PIRSF PIRSF001369 6 380 1.2E-103 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 202 230 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 130 143 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 332 346 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 312 328 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 180 195 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 PRINTS PR00143 Citrate synthase signature 255 275 1.6E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 AMD27_05655 4c1825669cd382b31b4c45816bb782d7 381 Gene3D G3DSA:1.10.230.10 228 326 2.2E-120 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 11 142 2.7E-44 T 11-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 Pfam PF08334 Type II secretion system (T2SS), protein G 35 141 2.1E-33 T 11-10-2018 IPR013545 Type II secretion system protein G AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 32 1.5E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 SUPERFAMILY SSF54523 39 142 6.8E-25 T 11-10-2018 AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 4.1E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 1.2E-16 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 1.2E-16 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMD27_14430 1e802fbc5a2018b5ea85641837ec9cf6 145 Gene3D G3DSA:3.30.700.10 35 142 3.1E-29 T 11-10-2018 AMD27_03320 6eb50eb9e9fb3380ee6cecf7b9038ddc 112 SUPERFAMILY SSF69754 1 102 1.18E-21 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMD27_03320 6eb50eb9e9fb3380ee6cecf7b9038ddc 112 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 100 5.4E-16 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMD27_03320 6eb50eb9e9fb3380ee6cecf7b9038ddc 112 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 101 1.6E-19 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMD27_03320 6eb50eb9e9fb3380ee6cecf7b9038ddc 112 Gene3D G3DSA:3.30.160.100 1 108 1.8E-24 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMD27_06710 73603e180c996514056e6efd49652037 244 Pfam PF00227 Proteasome subunit 4 173 1.2E-8 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMD27_06710 73603e180c996514056e6efd49652037 244 SUPERFAMILY SSF56235 2 239 1.08E-35 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_06710 73603e180c996514056e6efd49652037 244 PIRSF PIRSF009120 1 243 8.7E-105 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 AMD27_06710 73603e180c996514056e6efd49652037 244 Gene3D G3DSA:3.60.20.10 2 233 8.9E-29 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_15820 5d742e49b5b473bfa7a528151df6eaa1 386 Gene3D G3DSA:1.20.1250.20 5 377 1.7E-44 T 11-10-2018 AMD27_15820 5d742e49b5b473bfa7a528151df6eaa1 386 Pfam PF07690 Major Facilitator Superfamily 10 342 3.6E-36 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_15820 5d742e49b5b473bfa7a528151df6eaa1 386 SUPERFAMILY SSF103473 5 376 5.49E-54 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_09650 55357524ea86663016d7288142c5ac24 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 249 35.787 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMD27_09650 55357524ea86663016d7288142c5ac24 253 Gene3D G3DSA:3.90.550.10 1 252 9.3E-90 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_09650 55357524ea86663016d7288142c5ac24 253 SUPERFAMILY SSF53448 3 246 2.33E-53 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_09650 55357524ea86663016d7288142c5ac24 253 Pfam PF02348 Cytidylyltransferase 4 222 4.0E-49 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMD27_09650 55357524ea86663016d7288142c5ac24 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 242 4.5E-76 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMD27_06855 5eff06d1f152f2a6d88ed0804aa2bc0f 134 Gene3D G3DSA:3.40.960.10 32 134 2.4E-9 T 11-10-2018 AMD27_05765 ae4e4ab0dcb593fcd3e0e26d6e4d2676 154 PIRSF PIRSF000239 5 153 1.5E-21 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_05765 ae4e4ab0dcb593fcd3e0e26d6e4d2676 154 Pfam PF00578 AhpC/TSA family 16 125 1.4E-23 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_05765 ae4e4ab0dcb593fcd3e0e26d6e4d2676 154 Gene3D G3DSA:3.40.30.10 6 150 4.1E-34 T 11-10-2018 AMD27_05765 ae4e4ab0dcb593fcd3e0e26d6e4d2676 154 SUPERFAMILY SSF52833 8 152 5.34E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 Gene3D G3DSA:3.40.710.10 16 279 1.6E-75 T 11-10-2018 AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 1.7E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 1.7E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 1.7E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 SUPERFAMILY SSF56601 3 278 8.72E-66 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_05335 4ec34e9b90683ea38cc17b2bd99cd52b 436 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 27 261 1.1E-59 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Pfam PF06463 Molybdenum Cofactor Synthesis C 183 234 5.5E-6 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Pfam PF06463 Molybdenum Cofactor Synthesis C 223 329 7.1E-20 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 SMART SM00729 12 215 8.5E-4 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 360 4.6E-104 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 SUPERFAMILY SSF102114 3 291 9.55E-62 T 11-10-2018 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 3 360 35.689 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Pfam PF13353 4Fe-4S single cluster domain 19 111 1.8E-7 T 11-10-2018 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Gene3D G3DSA:3.20.20.70 1 360 1.3E-82 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_07780 63bd1a38ed335dabd81f9f25c9d28a19 360 Pfam PF04055 Radical SAM superfamily 16 176 9.3E-25 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMD27_15780 ed50f2e1bb139beaa151974adb7803ca 121 Gene3D G3DSA:3.30.428.10 1 117 1.7E-23 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_15780 ed50f2e1bb139beaa151974adb7803ca 121 SUPERFAMILY SSF54197 5 117 1.48E-22 T 11-10-2018 IPR036265 HIT-like superfamily AMD27_15780 ed50f2e1bb139beaa151974adb7803ca 121 Pfam PF01230 HIT domain 16 106 1.9E-10 T 11-10-2018 IPR001310 Histidine triad (HIT) protein AMD27_08325 e2fc10bb39f3c0b26daa182c566e5507 248 PIRSF PIRSF028589 1 245 1.3E-34 T 11-10-2018 IPR016893 Protein of unknown function UCP028589 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Gene3D G3DSA:2.60.40.3500 32 140 6.1E-9 T 11-10-2018 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 SMART SM00965 304 352 3.8E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Pfam PF07660 Secretin and TonB N terminus short domain 308 351 4.6E-9 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Pfam PF11741 AMIN domain 55 133 2.7E-9 T 11-10-2018 IPR021731 AMIN domain AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Gene3D G3DSA:2.60.40.3470 141 260 1.8E-28 T 11-10-2018 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Gene3D G3DSA:3.30.1370.120 376 462 1.0E-11 T 11-10-2018 IPR038591 NolW-like superfamily AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 279 718 2.8E-167 T 11-10-2018 IPR013355 Type IV pilus secretin PilQ AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Gene3D G3DSA:3.55.50.30 261 375 1.9E-39 T 11-10-2018 AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Pfam PF03958 Bacterial type II/III secretion system short domain 378 464 7.4E-15 T 11-10-2018 IPR005644 NolW-like AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 PRINTS PR00811 Bacterial general secretion pathway protein D signature 682 700 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 PRINTS PR00811 Bacterial general secretion pathway protein D signature 464 474 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 PRINTS PR00811 Bacterial general secretion pathway protein D signature 555 579 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 PRINTS PR00811 Bacterial general secretion pathway protein D signature 705 719 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family AMD27_14620 b15f3826cc467685ae68dd853914c24a 725 Pfam PF00263 Bacterial type II and III secretion system protein 559 717 5.1E-52 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMD27_06665 747098c14cba2317f3031aa4c996f655 309 SUPERFAMILY SSF47240 11 245 5.03E-39 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_09100 0d1746206ca2065f521a305815b4089d 217 Pfam PF00881 Nitroreductase family 8 192 2.2E-22 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMD27_09100 0d1746206ca2065f521a305815b4089d 217 SUPERFAMILY SSF55469 1 215 9.68E-59 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_09100 0d1746206ca2065f521a305815b4089d 217 Gene3D G3DSA:3.40.109.10 1 217 5.0E-54 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_02475 164bb32cb22631ff36f5aac35311914e 275 PIRSF PIRSF005902 2 275 4.8E-57 T 11-10-2018 IPR001130 TatD family GO:0016788 AMD27_02475 164bb32cb22631ff36f5aac35311914e 275 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 6 14 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMD27_02475 164bb32cb22631ff36f5aac35311914e 275 Gene3D G3DSA:3.20.20.140 3 271 1.1E-68 T 11-10-2018 AMD27_02475 164bb32cb22631ff36f5aac35311914e 275 SUPERFAMILY SSF51556 6 271 8.91E-67 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_02475 164bb32cb22631ff36f5aac35311914e 275 Pfam PF01026 TatD related DNase 7 270 5.0E-56 T 11-10-2018 IPR001130 TatD family GO:0016788 AMD27_12275 a7f9348486241fb8da4710b4f490c9c1 584 Pfam PF05552 Conserved TM helix 192 237 1.5E-14 T 11-10-2018 IPR008910 Conserved TM helix AMD27_12275 a7f9348486241fb8da4710b4f490c9c1 584 Pfam PF05552 Conserved TM helix 283 331 1.3E-11 T 11-10-2018 IPR008910 Conserved TM helix AMD27_12275 a7f9348486241fb8da4710b4f490c9c1 584 Pfam PF05552 Conserved TM helix 102 149 3.6E-16 T 11-10-2018 IPR008910 Conserved TM helix AMD27_06555 c59293605b704ec63ddeb3074b004309 285 Gene3D G3DSA:3.40.50.720 4 268 9.7E-88 T 11-10-2018 AMD27_06555 c59293605b704ec63ddeb3074b004309 285 Gene3D G3DSA:3.90.25.10 138 269 9.7E-88 T 11-10-2018 AMD27_06555 c59293605b704ec63ddeb3074b004309 285 SUPERFAMILY SSF51735 3 274 2.21E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_06555 c59293605b704ec63ddeb3074b004309 285 Pfam PF05368 NmrA-like family 3 221 1.1E-25 T 11-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMD27_05120 d3c87fced81946602a2dbee3c7a7b4a6 260 ProDom PD121987 PLASMID RESISTANT TELLURIUM KLAA KLAA/KILA MAINTENANCE RESISTANCE KILA TELLURITE 64 258 8.0E-57 T 11-10-2018 AMD27_13680 2ed7286b406b87c11a13241dc0798aa0 165 SUPERFAMILY SSF54427 42 155 9.19E-24 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_13680 2ed7286b406b87c11a13241dc0798aa0 165 Gene3D G3DSA:3.10.450.50 38 165 2.1E-38 T 11-10-2018 AMD27_13680 2ed7286b406b87c11a13241dc0798aa0 165 Pfam PF07366 SnoaL-like polyketide cyclase 49 153 7.3E-10 T 11-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 AMD27_00510 3caeaeca35c87c28a23a9a4a505a8394 132 Gene3D G3DSA:3.30.300.20 4 132 1.6E-24 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_00510 3caeaeca35c87c28a23a9a4a505a8394 132 Pfam PF02566 OsmC-like protein 37 129 6.8E-12 T 11-10-2018 IPR003718 OsmC/Ohr family AMD27_00510 3caeaeca35c87c28a23a9a4a505a8394 132 SUPERFAMILY SSF82784 15 131 1.7E-22 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMD27_16480 f7399be16d77d01f989f2a7fa5afffaf 88 Gene3D G3DSA:1.10.10.60 1 87 1.9E-5 T 11-10-2018 AMD27_16480 f7399be16d77d01f989f2a7fa5afffaf 88 Pfam PF01527 Transposase 2 71 2.5E-18 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMD27_16480 f7399be16d77d01f989f2a7fa5afffaf 88 SUPERFAMILY SSF46689 1 73 5.55E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_17030 f7399be16d77d01f989f2a7fa5afffaf 88 Gene3D G3DSA:1.10.10.60 1 87 1.9E-5 T 11-10-2018 AMD27_17030 f7399be16d77d01f989f2a7fa5afffaf 88 Pfam PF01527 Transposase 2 71 2.5E-18 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMD27_17030 f7399be16d77d01f989f2a7fa5afffaf 88 SUPERFAMILY SSF46689 1 73 5.55E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 SUPERFAMILY SSF54534 285 387 1.11E-32 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Gene3D G3DSA:1.10.4030.30 31 280 2.0E-47 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 SUPERFAMILY SSF54534 178 276 3.01E-12 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 SUPERFAMILY SSF109998 31 202 7.65E-26 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Pfam PF13616 PPIC-type PPIASE domain 276 384 1.7E-32 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 322 343 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Hamap MF_01183 Chaperone SurA [surA]. 13 429 25.566 T 11-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Gene3D G3DSA:3.10.50.40 281 421 2.2E-42 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Pfam PF00639 PPIC-type PPIASE domain 190 272 5.1E-6 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Gene3D G3DSA:3.10.50.40 179 276 2.0E-47 T 11-10-2018 AMD27_09705 545055c50847d7f0837ebf4245a230f9 432 Pfam PF09312 SurA N-terminal domain 31 149 1.1E-21 T 11-10-2018 IPR015391 SurA N-terminal AMD27_14535 0b968b107ed80c8ba22c61ed39c4cfe1 539 SUPERFAMILY SSF56112 95 435 8.98E-23 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_14535 0b968b107ed80c8ba22c61ed39c4cfe1 539 Pfam PF03109 ABC1 family 113 231 2.3E-33 T 11-10-2018 IPR004147 UbiB domain AMD27_15390 acbe82e24819abfd125d71a3c5cab53b 80 Gene3D G3DSA:3.20.20.370 1 44 4.6E-7 T 11-10-2018 AMD27_15390 acbe82e24819abfd125d71a3c5cab53b 80 SUPERFAMILY SSF88713 4 39 6.67E-7 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMD27_04645 e32d1780f214daf36cf7dd6d70558fef 121 Gene3D G3DSA:1.20.1300.10 1 120 2.1E-28 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04645 e32d1780f214daf36cf7dd6d70558fef 121 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 107 6.8E-8 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04645 e32d1780f214daf36cf7dd6d70558fef 121 PIRSF PIRSF000169 1 121 1.9E-38 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMD27_04645 e32d1780f214daf36cf7dd6d70558fef 121 SUPERFAMILY SSF81343 4 119 1.06E-25 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMD27_04645 e32d1780f214daf36cf7dd6d70558fef 121 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 9 119 3.8E-33 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMD27_12405 7c38e3c8cca5162935797b2e508a5d30 87 SUPERFAMILY SSF56024 19 83 7.85E-5 T 11-10-2018 AMD27_14650 2d222d5536c8b0eabb7b7d56323f2bdb 268 SUPERFAMILY SSF53335 6 250 3.87E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14650 2d222d5536c8b0eabb7b7d56323f2bdb 268 Pfam PF13649 Methyltransferase domain 88 166 2.4E-10 T 11-10-2018 AMD27_14650 2d222d5536c8b0eabb7b7d56323f2bdb 268 PIRSF PIRSF018249 1 267 4.3E-83 T 11-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AMD27_14650 2d222d5536c8b0eabb7b7d56323f2bdb 268 Gene3D G3DSA:3.40.50.150 3 268 2.1E-67 T 11-10-2018 AMD27_03550 6946100bc6aa8a979c226b1265a9edd4 271 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 91 9.0E-16 T 11-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMD27_03550 6946100bc6aa8a979c226b1265a9edd4 271 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 11 239 38.553 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMD27_03550 6946100bc6aa8a979c226b1265a9edd4 271 SUPERFAMILY SSF55729 84 242 2.12E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_03550 6946100bc6aa8a979c226b1265a9edd4 271 PIRSF PIRSF037208 4 252 1.1E-95 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMD27_03550 6946100bc6aa8a979c226b1265a9edd4 271 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 113 233 7.2E-37 T 11-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMD27_14685 99df28d8f5fd9e305f6368b16c51bba7 339 Gene3D G3DSA:3.40.190.10 122 333 3.6E-126 T 11-10-2018 AMD27_14685 99df28d8f5fd9e305f6368b16c51bba7 339 Pfam PF13531 Bacterial extracellular solute-binding protein 39 288 1.1E-36 T 11-10-2018 AMD27_14685 99df28d8f5fd9e305f6368b16c51bba7 339 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 26 334 7.4E-134 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMD27_14685 99df28d8f5fd9e305f6368b16c51bba7 339 SUPERFAMILY SSF53850 28 335 1.22E-77 T 11-10-2018 AMD27_14685 99df28d8f5fd9e305f6368b16c51bba7 339 Gene3D G3DSA:3.40.190.10 35 303 3.6E-126 T 11-10-2018 AMD27_12985 71626c7153db3044972cefa620c04c82 299 SUPERFAMILY SSF53448 3 196 1.74E-12 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_12985 71626c7153db3044972cefa620c04c82 299 Gene3D G3DSA:3.90.550.10 10 150 1.2E-7 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_06105 3c31cc10fbb920d2e7ad240d55452338 181 Gene3D G3DSA:2.60.450.10 57 181 2.8E-5 T 11-10-2018 AMD27_06105 3c31cc10fbb920d2e7ad240d55452338 181 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 178 2.2E-31 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AMD27_06105 3c31cc10fbb920d2e7ad240d55452338 181 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 8 179 2.2E-26 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AMD27_02250 11955468626d5e583f345405f77f576d 151 Gene3D G3DSA:2.40.128.270 32 148 9.6E-25 T 11-10-2018 IPR038670 HslJ-like superfamily AMD27_02250 11955468626d5e583f345405f77f576d 151 Pfam PF03724 META domain 35 144 2.0E-26 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 SUPERFAMILY SSF54523 7 140 3.3E-24 T 11-10-2018 AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 Pfam PF00114 Pilin (bacterial filament) 35 139 2.6E-19 T 11-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.0E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 8.1E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01540 bf85239723dcaa665b52589f4ccd9038 146 Gene3D G3DSA:3.30.700.10 7 141 7.0E-30 T 11-10-2018 AMD27_06735 bc14c3b50f84c111a9d1b64908266df3 480 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMD27_06735 bc14c3b50f84c111a9d1b64908266df3 480 SUPERFAMILY SSF53720 6 479 6.81E-142 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_06735 bc14c3b50f84c111a9d1b64908266df3 480 Pfam PF00171 Aldehyde dehydrogenase family 16 476 1.1E-151 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_06735 bc14c3b50f84c111a9d1b64908266df3 480 Gene3D G3DSA:3.40.309.10 258 445 2.3E-149 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_06735 bc14c3b50f84c111a9d1b64908266df3 480 Gene3D G3DSA:3.40.605.10 25 473 2.3E-149 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_12185 d59438a612f9f8ce4eb41da0da21c2f7 197 Pfam PF01810 LysE type translocator 12 190 8.9E-16 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_13640 7a4e89fd1536ff1e6285aff2336efa1f 283 Pfam PF02811 PHP domain 5 156 1.1E-12 T 11-10-2018 IPR004013 PHP domain GO:0003824 AMD27_13640 7a4e89fd1536ff1e6285aff2336efa1f 283 Gene3D G3DSA:3.20.20.140 4 256 1.5E-66 T 11-10-2018 AMD27_13640 7a4e89fd1536ff1e6285aff2336efa1f 283 Gene3D G3DSA:1.10.150.650 102 175 1.5E-66 T 11-10-2018 AMD27_13640 7a4e89fd1536ff1e6285aff2336efa1f 283 SUPERFAMILY SSF89550 4 269 2.49E-42 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMD27_13640 7a4e89fd1536ff1e6285aff2336efa1f 283 SMART SM00481 4 69 2.0E-16 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMD27_01565 f6276845ad9dc70c6a0f0b57b1b6ed23 64 Gene3D G3DSA:1.10.10.1100 1 56 2.2E-23 T 11-10-2018 AMD27_01565 f6276845ad9dc70c6a0f0b57b1b6ed23 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 51 2.3E-14 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 Gene3D G3DSA:3.40.50.1820 9 278 1.4E-56 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 Pfam PF00561 alpha/beta hydrolase fold 32 263 1.9E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 55 70 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 114 127 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 255 277 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 100 113 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 222 238 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 PRINTS PR00412 Epoxide hydrolase signature 35 53 1.2E-14 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_00045 7542da536b7d74cac8c608adc2cd0d40 283 SUPERFAMILY SSF53474 8 278 1.31E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_17485 228444d6aff816b73ad83af28e1a83c9 231 SUPERFAMILY SSF52833 56 200 5.6E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_17485 228444d6aff816b73ad83af28e1a83c9 231 Gene3D G3DSA:3.40.30.10 45 222 1.4E-23 T 11-10-2018 AMD27_17485 228444d6aff816b73ad83af28e1a83c9 231 Pfam PF01323 DSBA-like thioredoxin domain 96 197 1.2E-6 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 115 123 - T 11-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 SMART SM00477 56 244 6.1E-18 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 Pfam PF01223 DNA/RNA non-specific endonuclease 52 240 1.6E-32 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 SMART SM00892 53 244 3.2E-37 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 SUPERFAMILY SSF54060 28 242 1.53E-50 T 11-10-2018 AMD27_16690 3ba97a63b591e309b65535a83474d4e3 330 Gene3D G3DSA:3.40.570.10 34 251 4.6E-40 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Gene3D G3DSA:3.40.50.300 1 187 2.1E-14 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 705 8.6E-129 T 11-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 PIRSF PIRSF006107 1 713 0.0 T 11-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Gene3D G3DSA:3.40.50.10950 399 707 1.9E-129 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Gene3D G3DSA:3.40.50.10750 528 681 1.9E-129 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Gene3D G3DSA:3.40.1390.20 224 367 1.1E-15 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Pfam PF13500 AAA domain 2 228 2.3E-26 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 705 4.4E-118 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 SUPERFAMILY SSF75138 230 354 9.68E-20 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 SUPERFAMILY SSF53659 393 708 6.99E-88 T 11-10-2018 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 Pfam PF07085 DRTGG domain 234 345 1.6E-21 T 11-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMD27_02405 fdaa1ca7140493ac561d42fcb7345829 713 SUPERFAMILY SSF52540 1 240 1.67E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00670 d8d9379dd08e5236eae71e66a15796d4 150 Gene3D G3DSA:3.40.50.300 1 141 3.0E-30 T 11-10-2018 AMD27_00670 d8d9379dd08e5236eae71e66a15796d4 150 PIRSF PIRSF037081 1 31 16.0 T 11-10-2018 IPR017101 P-loop ATP/GTP binding protein, All4644, predicted AMD27_00670 d8d9379dd08e5236eae71e66a15796d4 150 PIRSF PIRSF037081 31 140 9.1E-11 T 11-10-2018 IPR017101 P-loop ATP/GTP binding protein, All4644, predicted AMD27_00670 d8d9379dd08e5236eae71e66a15796d4 150 SUPERFAMILY SSF52540 2 132 2.26E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00670 d8d9379dd08e5236eae71e66a15796d4 150 Pfam PF13671 AAA domain 42 103 2.9E-7 T 11-10-2018 AMD27_10640 582781bfa31a42e845249fa636132cc6 258 Gene3D G3DSA:3.40.1280.10 113 258 1.3E-44 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_10640 582781bfa31a42e845249fa636132cc6 258 Gene3D G3DSA:3.30.1330.30 5 105 2.3E-11 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMD27_10640 582781bfa31a42e845249fa636132cc6 258 SUPERFAMILY SSF75217 109 257 1.05E-35 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_10640 582781bfa31a42e845249fa636132cc6 258 Pfam PF00588 SpoU rRNA Methylase family 116 250 1.9E-29 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMD27_10640 582781bfa31a42e845249fa636132cc6 258 SUPERFAMILY SSF55315 5 104 2.71E-18 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like AMD27_15445 010e89a152ccc973fc4dac87f5550b44 194 SUPERFAMILY SSF53474 3 193 2.68E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_15445 010e89a152ccc973fc4dac87f5550b44 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 3 188 1.5E-40 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AMD27_15445 010e89a152ccc973fc4dac87f5550b44 194 Gene3D G3DSA:3.40.50.1820 1 192 4.3E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_13665 e0b4e0cdc902c48cd63df9b59467f274 104 Pfam PF00581 Rhodanese-like domain 16 92 7.9E-8 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_13665 e0b4e0cdc902c48cd63df9b59467f274 104 SMART SM00450 2 99 2.5E-8 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_13665 e0b4e0cdc902c48cd63df9b59467f274 104 SUPERFAMILY SSF52821 14 103 8.64E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_13665 e0b4e0cdc902c48cd63df9b59467f274 104 Gene3D G3DSA:3.40.250.10 11 104 2.3E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 SMART SM00382 130 292 7.8E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 Gene3D G3DSA:1.10.10.960 501 551 1.7E-5 T 11-10-2018 AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 SUPERFAMILY SSF52540 135 384 1.91E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 Pfam PF13401 AAA domain 130 275 3.9E-25 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 Pfam PF11426 Tn7 transposition regulator TnsC 507 551 6.5E-14 T 11-10-2018 IPR021542 Tn7 transposition regulator TnsC AMD27_15655 cfc48567ff6af524ff932e7c07dc477a 552 Gene3D G3DSA:3.40.50.300 120 277 2.1E-8 T 11-10-2018 AMD27_05760 039a8027324350ae08c0992240af858b 201 Pfam PF01810 LysE type translocator 13 199 2.1E-34 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_08240 c010f31e7250e4b7f18714dffb724a26 73 SMART SM00894 17 58 2.3E-6 T 11-10-2018 IPR008613 Excalibur calcium-binding domain AMD27_08240 c010f31e7250e4b7f18714dffb724a26 73 Pfam PF05901 Excalibur calcium-binding domain 21 57 3.4E-5 T 11-10-2018 IPR008613 Excalibur calcium-binding domain AMD27_10925 7c8fa18f2eff16be940b36d392307ca2 257 SUPERFAMILY SSF159594 51 242 5.49E-15 T 11-10-2018 AMD27_10925 7c8fa18f2eff16be940b36d392307ca2 257 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 54 237 9.1E-18 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AMD27_04895 eb11d57a6ebfea767328cc79c8fe9f44 303 Pfam PF04348 LppC putative lipoprotein 213 294 1.0E-7 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA AMD27_04895 eb11d57a6ebfea767328cc79c8fe9f44 303 Pfam PF04348 LppC putative lipoprotein 16 131 1.3E-16 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA AMD27_04895 eb11d57a6ebfea767328cc79c8fe9f44 303 Gene3D G3DSA:3.40.50.2300 117 223 3.7E-35 T 11-10-2018 AMD27_04895 eb11d57a6ebfea767328cc79c8fe9f44 303 SUPERFAMILY SSF53822 16 294 3.81E-36 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMD27_04895 eb11d57a6ebfea767328cc79c8fe9f44 303 Gene3D G3DSA:3.40.50.2300 19 284 3.7E-35 T 11-10-2018 AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 Gene3D G3DSA:3.30.230.10 1 155 8.9E-56 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 Pfam PF08544 GHMP kinases C terminal 206 251 1.7E-5 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 257 2.8E-76 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 PIRSF PIRSF010376 1 272 2.1E-76 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 SUPERFAMILY SSF54211 1 155 3.04E-44 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 Pfam PF00288 GHMP kinases N terminal domain 83 141 2.1E-12 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 2 262 30.241 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 Gene3D G3DSA:3.30.70.890 158 275 7.5E-18 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMD27_04500 60064200c68dd86b4027c0edcd58daf2 276 SUPERFAMILY SSF55060 156 257 1.68E-20 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 146 162 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 149 226 2.1E-17 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 Gene3D G3DSA:3.40.47.10 2 212 1.1E-52 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 SUPERFAMILY SSF53901 2 367 3.72E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 275 367 2.2E-20 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMD27_06060 f8c08884766e2743e18f97a1690767f1 371 Gene3D G3DSA:3.40.47.10 213 369 6.5E-38 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 AMD27_00920 602704785689ea9023bb543b06bb957e 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 77.607 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMD27_00920 602704785689ea9023bb543b06bb957e 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 5.3E-58 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMD27_00920 602704785689ea9023bb543b06bb957e 154 Pfam PF03477 ATP cone domain 50 136 2.8E-16 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMD27_00340 1ef7c837e2b4c80c81cc0986dee547a2 229 Gene3D G3DSA:3.10.50.40 125 228 1.4E-39 T 11-10-2018 AMD27_00340 1ef7c837e2b4c80c81cc0986dee547a2 229 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 138 225 4.0E-25 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_00340 1ef7c837e2b4c80c81cc0986dee547a2 229 SUPERFAMILY SSF54534 30 228 1.45E-54 T 11-10-2018 AMD27_00340 1ef7c837e2b4c80c81cc0986dee547a2 229 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 24 129 1.6E-24 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AMD27_00340 1ef7c837e2b4c80c81cc0986dee547a2 229 Gene3D G3DSA:1.10.287.460 21 124 3.5E-22 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 AMD27_17875 776ecea4ce1bd133eb8b09b10899ddfd 95 Gene3D G3DSA:3.10.450.530 1 90 2.2E-18 T 11-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily AMD27_17875 776ecea4ce1bd133eb8b09b10899ddfd 95 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 7 88 1.1E-26 T 11-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system AMD27_11135 79a7fe23d42d994705e8160d5e729814 273 Pfam PF14581 SseB protein C-terminal domain 144 259 7.6E-17 T 11-10-2018 IPR027945 SseB protein, C-terminal AMD27_11135 79a7fe23d42d994705e8160d5e729814 273 Pfam PF07179 SseB protein N-terminal domain 15 127 4.4E-17 T 11-10-2018 IPR009839 SseB protein N-terminal domain AMD27_12570 2238abc18b5f1604645bad69104fd56b 324 PIRSF PIRSF029038 1 321 1.4E-152 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AMD27_12570 2238abc18b5f1604645bad69104fd56b 324 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 12 311 54.445 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AMD27_12570 2238abc18b5f1604645bad69104fd56b 324 SUPERFAMILY SSF53335 49 308 2.39E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_12570 2238abc18b5f1604645bad69104fd56b 324 Gene3D G3DSA:3.40.50.150 47 309 6.2E-80 T 11-10-2018 AMD27_12570 2238abc18b5f1604645bad69104fd56b 324 Pfam PF05971 Protein of unknown function (DUF890) 10 309 7.0E-126 T 11-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 AMD27_05505 7cf7253b35fa486bee31ae6bd57f0e69 138 Pfam PF03928 Haem-degrading 7 130 4.2E-25 T 11-10-2018 IPR005624 Haem-degrading AMD27_05505 7cf7253b35fa486bee31ae6bd57f0e69 138 SUPERFAMILY SSF143744 2 133 1.83E-31 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_05505 7cf7253b35fa486bee31ae6bd57f0e69 138 Gene3D G3DSA:3.30.450.150 1 137 2.0E-33 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_13440 81a12d25c419aa71654859121f675c20 382 Gene3D G3DSA:2.130.10.10 41 381 4.5E-80 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 145 176 4.3 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 321 352 0.84 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 104 136 1.9E-5 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 242 273 59.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 280 311 1.1 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SMART SM00564 190 222 0.0084 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 Pfam PF13360 PQQ-like domain 79 309 2.3E-42 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMD27_13440 81a12d25c419aa71654859121f675c20 382 SUPERFAMILY SSF50998 70 372 7.85E-59 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMD27_13440 81a12d25c419aa71654859121f675c20 382 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 381 27.417 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB AMD27_13440 81a12d25c419aa71654859121f675c20 382 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 9 380 3.3E-106 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB AMD27_11935 155a32a824dfe4d0527653f016f14762 400 Pfam PF05992 SbmA/BacA-like family 85 397 1.8E-153 T 11-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 AMD27_11445 d98e7e4083c2e6c3704a2b969c8941e5 301 Gene3D G3DSA:3.30.2010.10 74 165 6.9E-33 T 11-10-2018 AMD27_11445 d98e7e4083c2e6c3704a2b969c8941e5 301 Hamap MF_00188 Protease HtpX [htpX]. 1 298 25.194 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AMD27_11445 d98e7e4083c2e6c3704a2b969c8941e5 301 Pfam PF01435 Peptidase family M48 81 298 1.0E-40 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_14180 2e4df6567af3d978aa17977523d2f7d7 210 Gene3D G3DSA:3.10.450.710 27 207 9.0E-48 T 11-10-2018 AMD27_14180 2e4df6567af3d978aa17977523d2f7d7 210 PIRSF PIRSF004649 1 210 1.0E-56 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMD27_14180 2e4df6567af3d978aa17977523d2f7d7 210 Pfam PF05494 MlaC protein 35 198 2.3E-38 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMD27_13495 eb808160cdd684b5cddc4041dc70ce77 443 Gene3D G3DSA:3.40.50.2000 260 419 1.4E-34 T 11-10-2018 AMD27_13495 eb808160cdd684b5cddc4041dc70ce77 443 Pfam PF00534 Glycosyl transferases group 1 250 395 4.6E-30 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMD27_13495 eb808160cdd684b5cddc4041dc70ce77 443 Gene3D G3DSA:3.40.50.2000 56 259 3.7E-26 T 11-10-2018 AMD27_13495 eb808160cdd684b5cddc4041dc70ce77 443 Pfam PF13439 Glycosyltransferase Family 4 71 238 7.8E-22 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMD27_13495 eb808160cdd684b5cddc4041dc70ce77 443 SUPERFAMILY SSF53756 59 426 1.21E-67 T 11-10-2018 AMD27_14980 638129c76b123758b72e54fc14572410 301 SUPERFAMILY SSF103481 41 132 6.02E-11 T 11-10-2018 AMD27_14980 638129c76b123758b72e54fc14572410 301 Pfam PF00892 EamA-like transporter family 6 131 6.3E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_14980 638129c76b123758b72e54fc14572410 301 Pfam PF00892 EamA-like transporter family 141 278 2.2E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_14980 638129c76b123758b72e54fc14572410 301 SUPERFAMILY SSF103481 205 283 9.15E-9 T 11-10-2018 AMD27_02420 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_15230 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_05625 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_02360 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_03855 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_06380 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_03285 7fd91d2e7e5b46a1c33f103709abbce4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.6E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_00600 c271b315bb385f30be7d93885f9f7261 266 Pfam PF00950 ABC 3 transport family 6 259 2.0E-55 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMD27_00600 c271b315bb385f30be7d93885f9f7261 266 SUPERFAMILY SSF81345 4 256 1.7E-32 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMD27_00600 c271b315bb385f30be7d93885f9f7261 266 Gene3D G3DSA:1.10.3470.10 33 266 3.1E-6 T 11-10-2018 IPR037294 ABC transporter, BtuC-like AMD27_00545 647522fa7ccd593697ed901e19c2ac62 91 Pfam PF11391 Protein of unknown function (DUF2798) 26 83 3.1E-19 T 11-10-2018 IPR021529 Protein of unknown function DUF2798 AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 SMART SM00382 123 248 4.3E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 Pfam PF00437 Type II/IV secretion system protein 11 269 5.0E-36 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 Gene3D G3DSA:3.30.450.90 1 100 9.6E-25 T 11-10-2018 AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 Gene3D G3DSA:3.40.50.300 102 357 4.4E-86 T 11-10-2018 AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 SUPERFAMILY SSF52540 4 338 3.59E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_03660 3b4ec5cd05c58e7bff6202f521e9a0f1 372 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 345 8.1E-129 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 SUPERFAMILY SSF46785 4 72 4.74E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 Gene3D G3DSA:3.90.1150.10 111 449 2.1E-78 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 7.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 SUPERFAMILY SSF53383 87 454 2.53E-81 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 Pfam PF00155 Aminotransferase class I and II 137 449 9.4E-38 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 SMART SM00345 10 69 9.8E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 Gene3D G3DSA:1.10.10.10 7 103 1.5E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_05520 1f46319dde4a59f9e97090f1c013d730 466 Gene3D G3DSA:3.40.640.10 140 357 2.1E-78 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_12040 93cb7367c73ef286ae2139c551181620 155 Pfam PF11042 Protein of unknown function (DUF2750) 24 123 6.0E-18 T 11-10-2018 IPR021284 Protein of unknown function DUF2750 AMD27_04805 9d8e073cd7bc241c4b469b5d3a8f67bf 164 Gene3D G3DSA:2.30.110.10 1 162 9.0E-49 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMD27_04805 9d8e073cd7bc241c4b469b5d3a8f67bf 164 Pfam PF01613 Flavin reductase like domain 11 158 6.2E-36 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMD27_04805 9d8e073cd7bc241c4b469b5d3a8f67bf 164 SUPERFAMILY SSF50475 6 160 8.34E-49 T 11-10-2018 AMD27_04805 9d8e073cd7bc241c4b469b5d3a8f67bf 164 SMART SM00903 11 157 5.0E-56 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Pfam PF01541 GIY-YIG catalytic domain 21 95 1.3E-8 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 596 26.192 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Pfam PF02151 UvrB/uvrC motif 208 240 3.3E-7 T 11-10-2018 IPR001943 UVR domain GO:0005515 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 388 531 8.4E-49 T 11-10-2018 IPR001162 UvrC family homology region AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 SMART SM00465 19 100 3.3E-22 T 11-10-2018 IPR000305 GIY-YIG endonuclease AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 SUPERFAMILY SSF47781 510 598 1.59E-21 T 11-10-2018 IPR010994 RuvA domain 2-like AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Gene3D G3DSA:3.30.420.340 377 541 1.2E-52 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 12 578 1.8E-173 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 SUPERFAMILY SSF82771 19 102 4.58E-23 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Gene3D G3DSA:1.10.150.20 544 599 7.0E-17 T 11-10-2018 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 Gene3D G3DSA:3.40.1440.10 5 104 2.8E-30 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMD27_01360 9971513b7ea5df5ff3095490f173cd1f 599 SUPERFAMILY SSF46600 194 246 2.35E-12 T 11-10-2018 IPR036876 UVR domain superfamily AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00097 Anthranilate synthase component II signature 169 182 1.0E-34 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 5.4E-13 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 5.4E-13 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 5.4E-13 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 2.5E-82 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 8.2E-5 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 8.2E-5 T 11-10-2018 AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 Pfam PF00117 Glutamine amidotransferase class-I 4 190 8.0E-53 T 11-10-2018 IPR017926 Glutamine amidotransferase AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 SUPERFAMILY SSF52317 1 192 4.95E-54 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_11270 68f3efb64c8e38c93d47b28cc38b9f2a 194 Gene3D G3DSA:3.40.50.880 1 193 7.8E-61 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like AMD27_08975 71417728658e690920785e6f72807a14 349 SUPERFAMILY SSF51735 2 165 1.05E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08975 71417728658e690920785e6f72807a14 349 SMART SM00859 3 141 1.4E-59 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMD27_08975 71417728658e690920785e6f72807a14 349 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 349 2.8E-128 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_08975 71417728658e690920785e6f72807a14 349 Gene3D G3DSA:3.30.360.10 147 317 9.7E-128 T 11-10-2018 AMD27_08975 71417728658e690920785e6f72807a14 349 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 343 42.535 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_08975 71417728658e690920785e6f72807a14 349 SUPERFAMILY SSF55347 149 317 4.86E-46 T 11-10-2018 AMD27_08975 71417728658e690920785e6f72807a14 349 Gene3D G3DSA:3.40.50.720 4 335 9.7E-128 T 11-10-2018 AMD27_08975 71417728658e690920785e6f72807a14 349 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 320 7.1E-19 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_08975 71417728658e690920785e6f72807a14 349 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 141 2.9E-38 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMD27_08975 71417728658e690920785e6f72807a14 349 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMD27_10665 b60826f9724cd23de05684590fde0949 417 Gene3D G3DSA:3.90.1150.10 9 393 5.4E-186 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_10665 b60826f9724cd23de05684590fde0949 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 6 416 52.817 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMD27_10665 b60826f9724cd23de05684590fde0949 417 Pfam PF00464 Serine hydroxymethyltransferase 8 385 7.1E-181 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMD27_10665 b60826f9724cd23de05684590fde0949 417 Gene3D G3DSA:3.40.640.10 36 288 5.4E-186 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_10665 b60826f9724cd23de05684590fde0949 417 PIRSF PIRSF000412 2 417 1.4E-168 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMD27_10665 b60826f9724cd23de05684590fde0949 417 SUPERFAMILY SSF53383 5 415 5.42E-182 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_10665 b60826f9724cd23de05684590fde0949 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMD27_00895 16db38147e526b0e60355efe10f3644e 243 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 243 2.4E-38 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMD27_00895 16db38147e526b0e60355efe10f3644e 243 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 24 222 4.7E-28 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 SUPERFAMILY SSF50129 1 163 1.98E-33 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 SUPERFAMILY SSF51735 113 232 1.74E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 Gene3D G3DSA:3.40.50.720 124 256 3.4E-90 T 11-10-2018 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 Pfam PF13602 Zinc-binding dehydrogenase 183 305 2.2E-23 T 11-10-2018 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 SMART SM00829 10 305 5.5E-24 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 Gene3D G3DSA:3.90.180.10 9 304 3.4E-90 T 11-10-2018 AMD27_05140 2e24dc05bf3e9a5eed967515e76fb4cb 308 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 1.5E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_11220 ceb2dd71d459b42d3cf481def2e5ec9c 147 Gene3D G3DSA:3.40.960.10 40 146 5.4E-8 T 11-10-2018 AMD27_11220 ceb2dd71d459b42d3cf481def2e5ec9c 147 Pfam PF10881 Protein of unknown function (DUF2726) 38 146 8.2E-16 T 11-10-2018 IPR024402 Domain of unknown function DUF2726 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 SMART SM01374 1 122 1.8E-83 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 SUPERFAMILY SSF50193 1 122 5.1E-50 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 Gene3D G3DSA:2.40.150.20 1 122 3.5E-53 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.7E-53 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.565 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMD27_14030 0b45a93fb8a5647b5d38ea3b762ad6f6 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 6.0E-57 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMD27_01275 eb3d960859d7850819063657a4df6967 194 Gene3D G3DSA:2.40.160.20 18 194 2.3E-38 T 11-10-2018 AMD27_01275 eb3d960859d7850819063657a4df6967 194 Pfam PF03922 OmpW family 19 194 6.7E-36 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AMD27_01275 eb3d960859d7850819063657a4df6967 194 SUPERFAMILY SSF56925 20 194 7.06E-20 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMD27_04995 cc27e27e9a1c2e312899d5655deb5b5f 155 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 150 27.412 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 AMD27_04995 cc27e27e9a1c2e312899d5655deb5b5f 155 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 21 147 8.8E-45 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 AMD27_17900 b5538cefc329a6a7612f84cc10f90028 297 Gene3D G3DSA:1.10.10.10 135 226 8.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_17900 b5538cefc329a6a7612f84cc10f90028 297 SUPERFAMILY SSF46785 122 221 1.5E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_17900 b5538cefc329a6a7612f84cc10f90028 297 SUPERFAMILY SSF46785 2 122 7.62E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_17900 b5538cefc329a6a7612f84cc10f90028 297 Pfam PF01051 Initiator Replication protein 2 217 1.0E-57 T 11-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 AMD27_17900 b5538cefc329a6a7612f84cc10f90028 297 Gene3D G3DSA:1.10.10.10 1 134 6.5E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11705 44fd2d1e2c772e6f085680f2185682ca 195 Pfam PF01553 Acyltransferase 29 139 1.5E-8 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_11705 44fd2d1e2c772e6f085680f2185682ca 195 SUPERFAMILY SSF69593 24 146 2.88E-10 T 11-10-2018 AMD27_11705 44fd2d1e2c772e6f085680f2185682ca 195 SMART SM00563 29 147 6.2E-13 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 Pfam PF02527 rRNA small subunit methyltransferase G 25 204 2.4E-52 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 206 26.961 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 PIRSF PIRSF003078 1 210 1.6E-52 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 Gene3D G3DSA:3.40.50.150 4 209 1.3E-63 T 11-10-2018 AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 SUPERFAMILY SSF53335 7 208 4.18E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_09685 8b7ef6e97086e85a8b5bb82f2ef4174a 210 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 208 1.5E-50 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMD27_08560 6c79604d3c6440d0d5e57d4f7d82c26b 94 Gene3D G3DSA:3.40.1260.10 4 93 1.7E-5 T 11-10-2018 IPR027396 DsrEFH-like AMD27_08560 6c79604d3c6440d0d5e57d4f7d82c26b 94 SUPERFAMILY SSF75169 5 91 7.85E-8 T 11-10-2018 IPR027396 DsrEFH-like AMD27_08560 6c79604d3c6440d0d5e57d4f7d82c26b 94 Pfam PF04077 DsrH like protein 17 87 1.3E-5 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AMD27_05890 00d304f7418fb8077603e4b66351ee12 315 Pfam PF13737 Transposase DDE domain 22 130 3.8E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_11115 953c4a54d42aea12bba8288ae6b8f224 201 Pfam PF01810 LysE type translocator 14 199 2.6E-30 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_11115 953c4a54d42aea12bba8288ae6b8f224 201 PIRSF PIRSF006324 1 201 1.0E-42 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_09915 2741fb1f1a502e2501bbac692e02a5bb 293 Pfam PF03180 NLPA lipoprotein 48 281 2.3E-63 T 11-10-2018 IPR004872 Lipoprotein NlpA family AMD27_09915 2741fb1f1a502e2501bbac692e02a5bb 293 Gene3D G3DSA:3.40.190.10 47 274 4.3E-73 T 11-10-2018 AMD27_09915 2741fb1f1a502e2501bbac692e02a5bb 293 Gene3D G3DSA:3.40.190.10 122 233 4.3E-73 T 11-10-2018 AMD27_09915 2741fb1f1a502e2501bbac692e02a5bb 293 SUPERFAMILY SSF53850 42 282 1.21E-64 T 11-10-2018 AMD27_16365 fd033531ee27129c00ec7b0ed79f069b 158 Pfam PF06319 DNA repair protein MmcB-like 31 107 4.7E-5 T 11-10-2018 IPR009394 DNA repair protein MmcB-like AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 424 596 6.8E-25 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 Gene3D G3DSA:2.40.50.140 322 416 3.7E-27 T 11-10-2018 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 Pfam PF17092 Penicillin-binding protein OB-like domain 327 419 3.0E-18 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 74 743 5.3E-176 T 11-10-2018 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 Pfam PF00912 Transglycosylase 61 235 1.3E-60 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 SUPERFAMILY SSF53955 54 260 2.62E-74 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 Gene3D G3DSA:1.10.3810.10 55 250 1.4E-73 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_14645 dad8619d62409a5abd28c830c4e236d4 851 SUPERFAMILY SSF56601 217 756 2.62E-119 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMD27_03590 9d8b9e960602aa9c23740e041bc6b786 240 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 3 239 19.306 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMD27_03590 9d8b9e960602aa9c23740e041bc6b786 240 Gene3D G3DSA:2.160.20.70 129 240 3.0E-26 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 AMD27_03590 9d8b9e960602aa9c23740e041bc6b786 240 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 237 3.3E-38 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMD27_03590 9d8b9e960602aa9c23740e041bc6b786 240 SUPERFAMILY SSF63848 134 232 1.44E-26 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 AMD27_03590 9d8b9e960602aa9c23740e041bc6b786 240 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 136 231 1.6E-25 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 195 1.0E-50 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 PIRSF PIRSF002070 134 190 160.0 T 11-10-2018 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 PIRSF PIRSF002070 1 155 1.3E-36 T 11-10-2018 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 SUPERFAMILY SSF50249 2 195 9.94E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 Pfam PF00436 Single-strand binding protein family 4 108 5.3E-39 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 34.886 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMD27_14940 cd1ac9183eb15711a33c700af48dc68f 195 Gene3D G3DSA:2.40.50.140 1 124 2.3E-44 T 11-10-2018 AMD27_11025 17a9e4ee2a9270a74e6ec9968cc576aa 296 SUPERFAMILY SSF103481 39 142 1.57E-14 T 11-10-2018 AMD27_11025 17a9e4ee2a9270a74e6ec9968cc576aa 296 SUPERFAMILY SSF103481 185 285 2.75E-12 T 11-10-2018 AMD27_11025 17a9e4ee2a9270a74e6ec9968cc576aa 296 Pfam PF00892 EamA-like transporter family 151 285 6.4E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_11025 17a9e4ee2a9270a74e6ec9968cc576aa 296 Pfam PF00892 EamA-like transporter family 8 137 1.6E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 Gene3D G3DSA:1.10.10.60 8 73 2.3E-21 T 11-10-2018 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 Gene3D G3DSA:1.10.357.10 90 216 3.5E-17 T 11-10-2018 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 4.9E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 4.9E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 73 3.0E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMD27_08940 4e544d173af2f6b644e314453bc41759 216 SUPERFAMILY SSF46689 15 85 3.95E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_04960 bfbd9fcafdfc5b82d7b132cba08d4221 198 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 25 198 4.6E-43 T 11-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AMD27_04960 bfbd9fcafdfc5b82d7b132cba08d4221 198 SUPERFAMILY SSF54001 24 197 3.53E-47 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMD27_04960 bfbd9fcafdfc5b82d7b132cba08d4221 198 Gene3D G3DSA:3.90.1720.10 22 198 1.5E-66 T 11-10-2018 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 SUPERFAMILY SSF103088 386 498 9.68E-33 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01021 OMPA domain signature 429 444 1.3E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01021 OMPA domain signature 399 421 1.3E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01021 OMPA domain signature 444 460 1.3E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 Pfam PF00691 OmpA family 398 493 3.2E-22 T 11-10-2018 IPR006665 OmpA-like domain AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 462 481 8.3E-9 T 11-10-2018 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 444 461 8.3E-9 T 11-10-2018 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 482 502 8.3E-9 T 11-10-2018 AMD27_10190 8f19af0cb9833fc5be61f333e613fb25 519 Gene3D G3DSA:3.30.1330.60 362 508 6.4E-39 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_05110 06dfe5ddc75fe66cd800cf49e80415bb 598 TIGRFAM TIGR04212 GlyGly_RbtA: rhombotarget A 1 595 4.8E-213 T 11-10-2018 IPR026454 Rhombotarget A AMD27_05110 06dfe5ddc75fe66cd800cf49e80415bb 598 SUPERFAMILY SSF51126 8 441 3.93E-11 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMD27_05110 06dfe5ddc75fe66cd800cf49e80415bb 598 TIGRFAM TIGR04214 CSLREA_Nterm: CSLREA domain 22 47 8.9E-11 T 11-10-2018 IPR026457 CSLREA domain AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.7E-15 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 SUPERFAMILY SSF52540 1 188 7.64E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 Hamap MF_00235 Adenylate kinase [adk]. 1 216 50.126 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 TIGRFAM TIGR01351 adk: adenylate kinase 2 209 5.3E-72 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 PRINTS PR00094 Adenylate kinase signature 32 46 3.0E-32 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 PRINTS PR00094 Adenylate kinase signature 4 17 3.0E-32 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 PRINTS PR00094 Adenylate kinase signature 156 171 3.0E-32 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 PRINTS PR00094 Adenylate kinase signature 173 187 3.0E-32 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 PRINTS PR00094 Adenylate kinase signature 81 97 3.0E-32 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 Pfam PF00406 Adenylate kinase 5 185 4.2E-54 T 11-10-2018 AMD27_04720 28d2b5801dfbfbf919351e000aae1548 219 Gene3D G3DSA:3.40.50.300 1 219 5.5E-78 T 11-10-2018 AMD27_02515 ef9a5169df9c91a4d0eec791c31d6fd6 373 Pfam PF12500 TRSP domain C terminus to PRTase_2 268 354 6.0E-24 T 11-10-2018 IPR022537 TRSP domain AMD27_02515 ef9a5169df9c91a4d0eec791c31d6fd6 373 PIRSF PIRSF020967 1 372 5.4E-118 T 11-10-2018 IPR011214 Uncharacterised conserved protein UCP020967 AMD27_02515 ef9a5169df9c91a4d0eec791c31d6fd6 373 SUPERFAMILY SSF53271 23 207 5.11E-12 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like AMD27_02515 ef9a5169df9c91a4d0eec791c31d6fd6 373 Pfam PF15609 Phosphoribosyl transferase 27 215 2.4E-59 T 11-10-2018 AMD27_02515 ef9a5169df9c91a4d0eec791c31d6fd6 373 Gene3D G3DSA:3.40.50.2020 30 215 4.2E-8 T 11-10-2018 AMD27_08535 2a45df9297452b6c94dbf83b6314d65f 199 SUPERFAMILY SSF54060 84 162 8.36E-14 T 11-10-2018 AMD27_08535 2a45df9297452b6c94dbf83b6314d65f 199 Pfam PF13392 HNH endonuclease 120 162 1.3E-12 T 11-10-2018 IPR003615 HNH nuclease AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 Gene3D G3DSA:3.40.50.720 398 559 4.8E-34 T 11-10-2018 AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 Pfam PF02254 TrkA-N domain 401 512 1.9E-22 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 11 279 2.6E-79 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 SUPERFAMILY SSF51735 400 526 3.24E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 Gene3D G3DSA:1.20.1530.20 1 381 7.8E-84 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_14445 d343cfca86da0158244692ed3eb99e1b 626 Pfam PF00999 Sodium/hydrogen exchanger family 9 372 1.6E-67 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMD27_04855 c54a4f5c585aa7ce82147f38fbee53ae 159 SUPERFAMILY SSF143744 25 155 5.49E-30 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_04855 c54a4f5c585aa7ce82147f38fbee53ae 159 Pfam PF03928 Haem-degrading 28 153 1.1E-23 T 11-10-2018 IPR005624 Haem-degrading AMD27_04855 c54a4f5c585aa7ce82147f38fbee53ae 159 Gene3D G3DSA:3.30.450.150 14 156 1.1E-31 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_10175 30f237a6f3ed8eec39c5bb90bc4ade93 262 Pfam PF00487 Fatty acid desaturase 46 255 1.1E-18 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMD27_10940 bbaf4435d31f7bb48b0892129bcda843 210 Pfam PF04403 Paraquat-inducible protein A 48 205 3.8E-38 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like AMD27_04835 c6d3d03c5a37da725bea30311c82d239 206 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 10 166 1.1E-11 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMD27_04835 c6d3d03c5a37da725bea30311c82d239 206 SUPERFAMILY SSF101327 7 166 2.62E-38 T 11-10-2018 IPR036255 YgfB-like superfamily AMD27_04835 c6d3d03c5a37da725bea30311c82d239 206 Gene3D G3DSA:1.20.120.740 2 178 7.7E-42 T 11-10-2018 AMD27_04835 c6d3d03c5a37da725bea30311c82d239 206 Pfam PF03695 Uncharacterised protein family (UPF0149) 21 164 5.6E-25 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMD27_04835 c6d3d03c5a37da725bea30311c82d239 206 ProSitePatterns PS00018 EF-hand calcium-binding domain. 143 155 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMD27_12500 06578d4bf98e55b7241209057d2474a6 185 Pfam PF02620 Uncharacterized ACR, COG1399 64 181 1.3E-16 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AMD27_14170 a4ca71f4bef76da4a8af0f82eca533aa 337 Gene3D G3DSA:3.30.460.20 2 138 3.5E-5 T 11-10-2018 AMD27_14170 a4ca71f4bef76da4a8af0f82eca533aa 337 SUPERFAMILY SSF144083 272 335 9.94E-13 T 11-10-2018 AMD27_14170 a4ca71f4bef76da4a8af0f82eca533aa 337 SUPERFAMILY SSF143865 2 274 6.8E-34 T 11-10-2018 AMD27_14170 a4ca71f4bef76da4a8af0f82eca533aa 337 Pfam PF01544 CorA-like Mg2+ transporter protein 27 332 2.2E-52 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMD27_14170 a4ca71f4bef76da4a8af0f82eca533aa 337 Gene3D G3DSA:1.20.58.340 261 337 1.2E-14 T 11-10-2018 AMD27_01780 edd0ee1ada45e5107937b97cfa782bc7 369 Pfam PF01594 AI-2E family transporter 12 344 1.2E-46 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 Gene3D G3DSA:3.40.190.290 92 294 1.3E-46 T 11-10-2018 AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 SUPERFAMILY SSF53850 90 295 3.98E-32 T 11-10-2018 AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 Pfam PF03466 LysR substrate binding domain 89 294 1.7E-29 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.8E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 Gene3D G3DSA:1.10.10.10 2 89 2.0E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11370 6a46d749b02e014497e4e1f6c28d7731 296 SUPERFAMILY SSF46785 3 108 1.21E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_02865 564457524b9648e28c2d27a42edc00d4 141 Gene3D G3DSA:3.30.300.20 47 140 1.8E-32 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta AMD27_02865 564457524b9648e28c2d27a42edc00d4 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 5.8E-57 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMD27_02865 564457524b9648e28c2d27a42edc00d4 141 SUPERFAMILY SSF82784 1 139 9.03E-46 T 11-10-2018 IPR036102 OsmC/Ohr superfamily AMD27_02865 564457524b9648e28c2d27a42edc00d4 141 Pfam PF02566 OsmC-like protein 41 137 3.9E-16 T 11-10-2018 IPR003718 OsmC/Ohr family AMD27_02865 564457524b9648e28c2d27a42edc00d4 141 Gene3D G3DSA:2.20.25.10 1 46 8.9E-23 T 11-10-2018 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 Gene3D G3DSA:3.90.470.10 1 109 1.8E-44 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 25.388 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 SUPERFAMILY SSF54843 1 107 1.57E-40 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 8.8E-36 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMD27_14055 a2b5f73b900675177ca1823f76ae6b1e 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.0E-45 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_13595 7c907921e1a1306aefdeb1f7d5344b23 184 SMART SM00479 8 181 4.6E-19 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_13595 7c907921e1a1306aefdeb1f7d5344b23 184 Pfam PF00929 Exonuclease 10 171 2.1E-33 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMD27_13595 7c907921e1a1306aefdeb1f7d5344b23 184 Gene3D G3DSA:3.30.420.10 1 184 5.5E-74 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_13595 7c907921e1a1306aefdeb1f7d5344b23 184 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 43.122 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 AMD27_13595 7c907921e1a1306aefdeb1f7d5344b23 184 SUPERFAMILY SSF53098 5 180 1.28E-45 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_00330 a4643c0736877ee59d6baf36958c9c40 194 SMART SM00644 26 176 1.8E-42 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMD27_00330 a4643c0736877ee59d6baf36958c9c40 194 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 36 177 1.4E-25 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMD27_00330 a4643c0736877ee59d6baf36958c9c40 194 Gene3D G3DSA:3.40.80.10 12 193 1.7E-55 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMD27_00330 a4643c0736877ee59d6baf36958c9c40 194 SUPERFAMILY SSF55846 13 190 4.32E-61 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMD27_10605 211b948ebede09c4cf5b945707c7699b 146 TIGRFAM TIGR02801 tolR: protein TolR 17 143 6.0E-41 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMD27_10605 211b948ebede09c4cf5b945707c7699b 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 144 1.7E-26 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMD27_10605 211b948ebede09c4cf5b945707c7699b 146 Gene3D G3DSA:3.30.420.270 65 140 5.7E-12 T 11-10-2018 AMD27_10605 211b948ebede09c4cf5b945707c7699b 146 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 10 143 26.383 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMD27_09540 5dea4202d49e539da8c92a31bc860fe2 116 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 107 1.0E-8 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 SUPERFAMILY SSF54506 190 393 1.73E-75 T 11-10-2018 AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 395 4.6E-229 T 11-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 Gene3D G3DSA:3.10.310.10 181 374 2.1E-147 T 11-10-2018 AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 SUPERFAMILY SSF54506 2 182 4.55E-70 T 11-10-2018 AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 Gene3D G3DSA:3.10.310.10 11 388 2.1E-147 T 11-10-2018 AMD27_11815 45071011c135745f6c4bfdc878a9f50b 395 Pfam PF04303 PrpF protein 6 391 1.0E-174 T 11-10-2018 IPR007400 PrpF protein AMD27_14615 54bce932e8441932a83df21cb5c38058 180 PRINTS PR01100 Shikimate kinase family signature 103 120 1.2E-25 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 PRINTS PR01100 Shikimate kinase family signature 12 27 1.2E-25 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 PRINTS PR01100 Shikimate kinase family signature 64 72 1.2E-25 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 PRINTS PR01100 Shikimate kinase family signature 36 49 1.2E-25 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 PRINTS PR01100 Shikimate kinase family signature 82 91 1.2E-25 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 Hamap MF_00109 Shikimate kinase [aroK]. 9 175 29.537 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 ProSitePatterns PS01128 Shikimate kinase signature. 65 90 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 Pfam PF01202 Shikimate kinase 18 173 4.8E-55 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 Gene3D G3DSA:3.40.50.300 2 179 1.3E-58 T 11-10-2018 AMD27_14615 54bce932e8441932a83df21cb5c38058 180 SUPERFAMILY SSF52540 11 174 2.3E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06815 5293ffc3ba5ff387e83f7d5e9d486218 230 Gene3D G3DSA:1.10.260.40 12 61 2.0E-5 T 11-10-2018 AMD27_06815 5293ffc3ba5ff387e83f7d5e9d486218 230 SUPERFAMILY SSF51306 85 222 4.01E-11 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMD27_02620 5d5ae3f27b9ed2be8ae4cd85b203d5e4 273 SUPERFAMILY SSF53098 3 221 1.66E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_02620 5d5ae3f27b9ed2be8ae4cd85b203d5e4 273 Gene3D G3DSA:3.30.420.10 5 214 1.2E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_02620 5d5ae3f27b9ed2be8ae4cd85b203d5e4 273 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 46 254 3.9E-71 T 11-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMD27_10735 9af06502d625d631f2a4b8d2d79173ed 169 Pfam PF11948 Protein of unknown function (DUF3465) 62 169 7.3E-52 T 11-10-2018 IPR021856 Protein of unknown function DUF3465 AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 Pfam PF14497 Glutathione S-transferase, C-terminal domain 138 203 1.5E-6 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 7.7E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 Gene3D G3DSA:1.20.1050.10 84 208 9.5E-25 T 11-10-2018 AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 Gene3D G3DSA:3.40.30.10 1 83 9.5E-35 T 11-10-2018 AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 SUPERFAMILY SSF52833 1 80 1.76E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_00515 d07dfc92862a5f9c5c26f48333412b3b 212 SUPERFAMILY SSF47616 83 207 2.09E-20 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_16900 68bb95d916f6f45116bc3a14dc8b8cce 351 TIGRFAM TIGR03187 DGQHR: DGQHR domain 9 278 8.2E-59 T 11-10-2018 IPR017601 DGQHR-containing domain AMD27_16900 68bb95d916f6f45116bc3a14dc8b8cce 351 Pfam PF14072 DNA-sulfur modification-associated 7 334 6.0E-85 T 11-10-2018 IPR017642 DNA sulphur modification protein DndB AMD27_12935 12b012c44dce2718a08a5e4ba5d6d226 172 Gene3D G3DSA:3.10.450.160 108 172 3.0E-7 T 11-10-2018 AMD27_12935 12b012c44dce2718a08a5e4ba5d6d226 172 Pfam PF11776 Nickel/cobalt transporter regulator 136 168 9.9E-9 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMD27_11555 2f8bcc77777ee1113a9d192aa6923707 588 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 48 137 1.7E-27 T 11-10-2018 IPR032093 Phospholipase D, N-terminal AMD27_11555 2f8bcc77777ee1113a9d192aa6923707 588 SUPERFAMILY SSF56300 139 555 2.22E-34 T 11-10-2018 AMD27_11555 2f8bcc77777ee1113a9d192aa6923707 588 Gene3D G3DSA:2.60.40.380 40 140 1.1E-31 T 11-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 AMD27_11555 2f8bcc77777ee1113a9d192aa6923707 588 Pfam PF09423 PhoD-like phosphatase 147 551 7.7E-123 T 11-10-2018 IPR018946 Alkaline phosphatase D-related AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 Pfam PF01144 Coenzyme A transferase 7 200 6.1E-42 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 208 3.3E-98 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 11-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 SUPERFAMILY SSF100950 3 208 3.35E-72 T 11-10-2018 IPR037171 NagB/RpiA transferase-like AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 SMART SM00882 6 202 1.2E-75 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMD27_07600 29c802e1aa03ed9c70fbc2f558be0204 209 Gene3D G3DSA:3.40.1080.10 2 208 7.9E-101 T 11-10-2018 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 688 1.8E-233 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 SUPERFAMILY SSF109604 337 490 1.33E-15 T 11-10-2018 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 687 24.773 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 Pfam PF05746 DALR anticodon binding domain 582 680 5.7E-9 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 1.3E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 1.3E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 1.3E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 1.3E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 1.3E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_01860 7b36f9068f65b93e8db2ae836f6b01f3 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 550 2.4E-199 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 90 4.9E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 SMART SM00829 14 326 1.2E-50 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 Gene3D G3DSA:3.40.50.720 124 265 7.4E-104 T 11-10-2018 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 SUPERFAMILY SSF50129 5 143 2.59E-41 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 Gene3D G3DSA:3.90.180.10 17 326 7.4E-104 T 11-10-2018 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 Pfam PF00107 Zinc-binding dehydrogenase 155 276 2.6E-22 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 SUPERFAMILY SSF51735 115 292 9.81E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_04220 be0faa8db95afa3dfd349cd5787c95b7 329 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 5 327 2.0E-136 T 11-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 AMD27_01690 11bf206492c3ab47e7f8fe4a614feaee 324 SUPERFAMILY SSF53474 44 319 1.97E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01690 11bf206492c3ab47e7f8fe4a614feaee 324 Gene3D G3DSA:3.40.50.1820 40 324 1.4E-72 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01690 11bf206492c3ab47e7f8fe4a614feaee 324 Pfam PF00561 alpha/beta hydrolase fold 48 146 2.6E-12 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_06140 5cf0a45c99802d73b755536b9b0f8d1e 162 Gene3D G3DSA:2.150.10.10 38 162 2.6E-6 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMD27_06140 5cf0a45c99802d73b755536b9b0f8d1e 162 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 112 159 2.9E-6 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass AMD27_06140 5cf0a45c99802d73b755536b9b0f8d1e 162 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 9 36 2.6E-4 T 11-10-2018 IPR010221 VCBS repeat AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-21 T 11-10-2018 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 Gene3D G3DSA:1.10.720.90 2 55 2.1E-23 T 11-10-2018 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 SUPERFAMILY SSF74731 3 117 3.4E-47 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.8E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.8E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.8E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 Gene3D G3DSA:1.10.1900.20 56 119 2.7E-25 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 Pfam PF00453 Ribosomal protein L20 3 109 7.5E-46 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.19 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.8E-46 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02745 14602db748f2767efa4ebefbfec0553f 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 216 6.7E-26 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 111 7.6E-27 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 SUPERFAMILY SSF57716 215 267 1.54E-15 T 11-10-2018 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 266 1.5E-85 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Gene3D G3DSA:3.20.190.10 2 126 1.0E-34 T 11-10-2018 IPR035937 MutM-like, N-terminal AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Pfam PF06827 Zinc finger found in FPG and IleRS 239 267 1.5E-7 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 SMART SM00898 2 113 2.0E-44 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 SUPERFAMILY SSF46946 128 220 1.62E-27 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 267 38.777 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 SMART SM01232 127 219 5.0E-42 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 Gene3D G3DSA:1.10.8.50 129 267 9.9E-43 T 11-10-2018 AMD27_12760 e4f0ab8589735a878aa9b9d2035f607a 284 SUPERFAMILY SSF81624 2 136 4.97E-35 T 11-10-2018 IPR035937 MutM-like, N-terminal AMD27_10695 a898b78efaf416d8e9073e4ee1fd24e7 311 Pfam PF00005 ABC transporter 21 165 5.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_10695 a898b78efaf416d8e9073e4ee1fd24e7 311 SUPERFAMILY SSF52540 4 228 1.67E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10695 a898b78efaf416d8e9073e4ee1fd24e7 311 Gene3D G3DSA:3.40.50.300 1 237 7.8E-64 T 11-10-2018 AMD27_10695 a898b78efaf416d8e9073e4ee1fd24e7 311 SMART SM00382 30 213 3.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_10695 a898b78efaf416d8e9073e4ee1fd24e7 311 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_13095 d73cd34f11cb7602dc48659979244d60 294 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 11 270 7.7E-57 T 11-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 1197 1245 0.0014 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 408 453 0.0047 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 501 540 0.0033 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2313 2352 0.0011 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2498 2538 7.4E-4 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2592 2631 0.0082 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2220 2260 0.0031 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 1756 1799 0.0092 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2127 2167 0.0034 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF13750 Bacterial Ig-like domain (group 3) 2406 2445 9.1E-4 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF12245 Bacterial Ig-like domain (group 3) 1288 1313 0.91 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF12245 Bacterial Ig-like domain (group 3) 727 755 0.0094 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Pfam PF12245 Bacterial Ig-like domain (group 3) 829 849 0.45 T 11-10-2018 IPR022038 Bacterial Ig-like domain AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 3083 3156 1.1E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3732 3810 1.6E-12 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1700 1791 9.9E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1421 1510 1.3E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2259 2349 1.8E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 156 259 8.7E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1049 1141 7.7E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1517 1605 8.0E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2887 2992 5.2E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1792 1884 2.3E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1142 1233 4.1E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2633 2719 6.7E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 770 862 5.2E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2447 2535 6.5E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 355 445 7.6E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1606 1695 1.1E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1889 1976 9.0E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2720 2820 8.9E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2540 2628 1.2E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 567 673 9.5E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2995 3082 1.2E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2354 2442 1.7E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 863 955 3.1E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 447 538 8.0E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2166 2256 7.2E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 261 350 2.0E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1234 1327 1.7E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1977 2067 1.4E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 676 767 2.5E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 1328 1420 9.6E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 2070 2163 1.7E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_11660 031fff7ddae191e3b74600d8bc7649c3 3812 Gene3D G3DSA:2.60.40.10 956 1048 4.4E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold AMD27_08235 33a7dd91db3d79c31ca09101a6d8d6c2 152 SMART SM00530 57 115 0.0093 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_08235 33a7dd91db3d79c31ca09101a6d8d6c2 152 Gene3D G3DSA:1.10.260.40 11 110 3.8E-14 T 11-10-2018 AMD27_08235 33a7dd91db3d79c31ca09101a6d8d6c2 152 Pfam PF12844 Helix-turn-helix domain 55 104 1.1E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_08235 33a7dd91db3d79c31ca09101a6d8d6c2 152 SUPERFAMILY SSF47413 47 104 2.82E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_15715 7b7d2fa94578ee00fc7b91172b259210 209 SUPERFAMILY SSF56235 4 66 1.14E-5 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_15715 7b7d2fa94578ee00fc7b91172b259210 209 Gene3D G3DSA:3.60.20.10 1 127 3.9E-6 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMD27_13260 44097746b446138161557e6479b41074 60 SUPERFAMILY SSF47598 11 51 1.04E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMD27_13260 44097746b446138161557e6479b41074 60 Pfam PF05534 HicB family 12 41 1.6E-6 T 11-10-2018 IPR008651 Uncharacterised protein family HicB AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 Gene3D G3DSA:1.10.10.60 185 234 5.4E-15 T 11-10-2018 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 238 280 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 SMART SM00342 201 284 1.4E-32 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 253 268 2.9E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 268 284 2.9E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 Pfam PF12833 Helix-turn-helix domain 207 285 9.1E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 Gene3D G3DSA:1.10.10.60 235 288 7.8E-17 T 11-10-2018 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 SUPERFAMILY SSF46689 238 286 9.86E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_00525 0e202cfd84c66855dd4c54c98bc8172c 289 SUPERFAMILY SSF46689 186 235 7.17E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_08070 174b723ef8d1590c6c7c6df034c8ed19 123 Pfam PF15569 Immunity protein 40 22 97 8.1E-8 T 11-10-2018 IPR029080 Immunity protein 40 AMD27_14715 3c475385d97baa7ceccb79d0de4d388a 112 SUPERFAMILY SSF81901 7 102 4.71E-12 T 11-10-2018 AMD27_14715 3c475385d97baa7ceccb79d0de4d388a 112 Pfam PF08238 Sel1 repeat 40 58 7.4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_14715 3c475385d97baa7ceccb79d0de4d388a 112 Pfam PF08238 Sel1 repeat 60 95 1.7E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_14715 3c475385d97baa7ceccb79d0de4d388a 112 Gene3D G3DSA:1.25.40.10 7 110 1.7E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_14715 3c475385d97baa7ceccb79d0de4d388a 112 SMART SM00671 59 95 4.1E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_06455 8c600664051dbd96811690b392b8df63 352 Gene3D G3DSA:3.40.50.1170 23 238 3.3E-85 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 PIRSF PIRSF500176 22 352 2.0E-83 T 11-10-2018 AMD27_06455 8c600664051dbd96811690b392b8df63 352 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 107 117 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 PRINTS PR00139 Asparaginase/glutaminase family signature 286 304 9.5E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 PRINTS PR00139 Asparaginase/glutaminase family signature 106 124 9.5E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 9.5E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AMD27_06455 8c600664051dbd96811690b392b8df63 352 Gene3D G3DSA:3.40.50.40 239 352 7.2E-34 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 SMART SM00870 25 346 3.2E-119 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 Pfam PF00710 Asparaginase, N-terminal 25 216 2.1E-52 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 SUPERFAMILY SSF53774 24 351 2.88E-90 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 PIRSF PIRSF001220 20 352 1.5E-85 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMD27_06455 8c600664051dbd96811690b392b8df63 352 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 25 352 1.3E-109 T 11-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 AMD27_01445 f038d9d48a183f9eba01538a838ddf7a 203 Pfam PF01121 Dephospho-CoA kinase 4 179 8.3E-63 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMD27_01445 f038d9d48a183f9eba01538a838ddf7a 203 Gene3D G3DSA:3.40.50.300 1 202 2.5E-64 T 11-10-2018 AMD27_01445 f038d9d48a183f9eba01538a838ddf7a 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 26.359 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMD27_01445 f038d9d48a183f9eba01538a838ddf7a 203 SUPERFAMILY SSF52540 1 197 1.24E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01445 f038d9d48a183f9eba01538a838ddf7a 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 7.1E-52 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMD27_15355 4f0307eb81d1c895b6d73b6a90c4f00b 115 Gene3D G3DSA:3.40.30.10 1 114 2.7E-36 T 11-10-2018 AMD27_15355 4f0307eb81d1c895b6d73b6a90c4f00b 115 Pfam PF03960 ArsC family 5 112 1.5E-13 T 11-10-2018 IPR006660 Arsenate reductase-like AMD27_15355 4f0307eb81d1c895b6d73b6a90c4f00b 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 112 3.7E-24 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR AMD27_15355 4f0307eb81d1c895b6d73b6a90c4f00b 115 SUPERFAMILY SSF52833 1 112 2.41E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_07230 e674e3cf09f7e9d1f7f0b54a69723aed 127 Gene3D G3DSA:3.30.56.110 9 127 9.0E-51 T 11-10-2018 AMD27_07230 e674e3cf09f7e9d1f7f0b54a69723aed 127 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 13 126 1.3E-50 T 11-10-2018 IPR018714 Protein of unknown function DUF2237 AMD27_12190 60c4aa99e8db2359d98393f96aab6680 430 SUPERFAMILY SSF52540 168 398 9.16E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12190 60c4aa99e8db2359d98393f96aab6680 430 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 174 415 6.5E-98 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AMD27_12190 60c4aa99e8db2359d98393f96aab6680 430 Hamap MF_02040 Iron-sulfur cluster carrier protein. 166 416 36.714 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AMD27_12190 60c4aa99e8db2359d98393f96aab6680 430 ProSitePatterns PS01215 Mrp family signature. 281 297 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 AMD27_12190 60c4aa99e8db2359d98393f96aab6680 430 Gene3D G3DSA:3.40.50.300 165 414 1.5E-80 T 11-10-2018 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 Pfam PF02401 LytB protein 3 283 5.4E-95 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.9 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 3.2E-102 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 Gene3D G3DSA:3.40.1010.20 97 197 3.0E-113 T 11-10-2018 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 Gene3D G3DSA:3.40.1010.20 6 283 3.0E-113 T 11-10-2018 AMD27_01590 788761e8322aee17c0fd8bb5a2584832 316 Gene3D G3DSA:3.40.50.11270 12 96 3.0E-113 T 11-10-2018 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 SUPERFAMILY SSF47819 193 281 3.55E-18 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 SUPERFAMILY SSF47819 291 368 3.07E-15 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 Gene3D G3DSA:3.30.420.10 1 190 9.5E-47 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 SMART SM00474 2 169 2.8E-24 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 Gene3D G3DSA:1.10.150.80 296 370 8.2E-7 T 11-10-2018 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 Pfam PF00570 HRDC domain 211 276 8.3E-15 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 Pfam PF01612 3'-5' exonuclease 3 168 8.4E-23 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMD27_07435 55388c20de4555f8ed624932d526cac6 380 SUPERFAMILY SSF53098 3 205 3.29E-49 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_07435 55388c20de4555f8ed624932d526cac6 380 Gene3D G3DSA:1.10.150.80 195 288 1.7E-14 T 11-10-2018 AMD27_02870 7964e25f94be672d0cf94f3fa07753c1 274 Pfam PF00795 Carbon-nitrogen hydrolase 3 259 2.5E-48 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMD27_02870 7964e25f94be672d0cf94f3fa07753c1 274 SUPERFAMILY SSF56317 3 269 2.75E-69 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_02870 7964e25f94be672d0cf94f3fa07753c1 274 Gene3D G3DSA:3.60.110.10 1 274 2.9E-85 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_02870 7964e25f94be672d0cf94f3fa07753c1 274 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 SMART SM00267 143 316 1.5E-7 T 11-10-2018 IPR000160 GGDEF domain AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 152 315 3.9E-18 T 11-10-2018 IPR000160 GGDEF domain AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 SUPERFAMILY SSF55785 39 143 1.67E-5 T 11-10-2018 IPR035965 PAS domain superfamily AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 Pfam PF00990 Diguanylate cyclase, GGDEF domain 155 311 2.1E-17 T 11-10-2018 IPR000160 GGDEF domain AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 SUPERFAMILY SSF55073 160 315 3.37E-18 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 Gene3D G3DSA:3.30.70.270 141 314 8.1E-26 T 11-10-2018 AMD27_11810 76a12133463d6a47aff02c4914a33f31 317 Gene3D G3DSA:3.30.450.20 19 140 8.1E-7 T 11-10-2018 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 SUPERFAMILY SSF56784 9 205 1.42E-40 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 Gene3D G3DSA:1.10.150.520 21 95 4.7E-47 T 11-10-2018 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.7E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.7E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.7E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 1.7E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 193 6.1E-36 T 11-10-2018 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 Gene3D G3DSA:3.40.50.1000 9 208 4.7E-47 T 11-10-2018 IPR023214 HAD superfamily AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 189 3.4E-16 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_03075 ecd30e4ae237a496898c1cba95ac1ac4 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 126 193 3.0E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_09270 cc1ff174fa732d6337380a9d3b83db48 316 SUPERFAMILY SSF53474 35 313 3.08E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09270 cc1ff174fa732d6337380a9d3b83db48 316 Gene3D G3DSA:3.40.50.1820 15 315 9.9E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09270 cc1ff174fa732d6337380a9d3b83db48 316 Pfam PF12146 Serine aminopeptidase, S33 40 292 2.9E-22 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_03740 4c0be940d72fbd0bbccc86df09390bfd 165 Gene3D G3DSA:3.10.129.10 11 165 1.8E-42 T 11-10-2018 AMD27_03740 4c0be940d72fbd0bbccc86df09390bfd 165 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 50 159 1.1E-11 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMD27_03740 4c0be940d72fbd0bbccc86df09390bfd 165 SUPERFAMILY SSF54637 24 163 1.61E-20 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_03740 4c0be940d72fbd0bbccc86df09390bfd 165 Pfam PF03061 Thioesterase superfamily 68 154 1.1E-13 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_02470 a82fd562c079ae380abf3ca1720f6f44 333 Gene3D G3DSA:3.90.640.20 223 318 2.3E-28 T 11-10-2018 IPR037126 PdaC/RsiV-like superfamily AMD27_02470 a82fd562c079ae380abf3ca1720f6f44 333 Pfam PF11738 Protein of unknown function (DUF3298) 232 303 8.6E-11 T 11-10-2018 IPR021729 Domain of unknown function DUF3298 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 SUPERFAMILY SSF47648 23 82 1.31E-14 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 Gene3D G3DSA:1.20.970.10 14 83 9.9E-25 T 11-10-2018 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 Pfam PF00591 Glycosyl transferase family, a/b domain 108 324 7.8E-12 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 Pfam PF02885 Glycosyl transferase family, helical bundle domain 27 80 4.0E-14 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 Gene3D G3DSA:3.40.1030.10 85 334 5.4E-59 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_05260 1f0ede762d92c0201fb697cfa34ca427 336 SUPERFAMILY SSF52418 87 333 2.88E-59 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMD27_04985 91ab2537f3d17e01fcda818d98feaf17 470 ProSitePatterns PS00218 Amino acid permeases signature. 50 81 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_04985 91ab2537f3d17e01fcda818d98feaf17 470 PIRSF PIRSF006060 2 470 1.1E-80 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_04985 91ab2537f3d17e01fcda818d98feaf17 470 Gene3D G3DSA:1.20.1740.10 17 470 8.5E-67 T 11-10-2018 AMD27_04985 91ab2537f3d17e01fcda818d98feaf17 470 Pfam PF00324 Amino acid permease 25 467 1.7E-116 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_13485 bd08729c4eed85ccecb7011f9ea0e725 183 Gene3D G3DSA:1.20.144.10 64 183 4.5E-18 T 11-10-2018 AMD27_13485 bd08729c4eed85ccecb7011f9ea0e725 183 SMART SM00014 63 173 1.6E-13 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMD27_13485 bd08729c4eed85ccecb7011f9ea0e725 183 Pfam PF01569 PAP2 superfamily 66 176 2.8E-20 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMD27_13485 bd08729c4eed85ccecb7011f9ea0e725 183 SUPERFAMILY SSF48317 8 174 3.27E-34 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 SUPERFAMILY SSF52172 8 132 1.71E-37 T 11-10-2018 IPR011006 CheY-like superfamily AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 1.3E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 Pfam PF00072 Response regulator receiver domain 10 119 1.5E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 SMART SM00448 8 118 1.0E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 Gene3D G3DSA:1.10.10.10 130 238 8.8E-41 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 SMART SM00862 155 231 2.8E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 Gene3D G3DSA:3.40.50.2300 1 129 4.6E-36 T 11-10-2018 AMD27_12390 bfca79099c2a02b075f27670de3fb2c4 238 SUPERFAMILY SSF46894 135 232 4.54E-28 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_15180 7fedbd9c05e935e7a0ecf845e4ec7599 93 SUPERFAMILY SSF46689 45 90 1.51E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_15180 7fedbd9c05e935e7a0ecf845e4ec7599 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_14910 7fedbd9c05e935e7a0ecf845e4ec7599 93 SUPERFAMILY SSF46689 45 90 1.51E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_14910 7fedbd9c05e935e7a0ecf845e4ec7599 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 Gene3D G3DSA:3.40.50.620 1 247 2.7E-84 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 SUPERFAMILY SSF52402 1 242 1.19E-83 T 11-10-2018 AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 PIRSF PIRSF000090 1 249 2.1E-82 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 Pfam PF01012 Electron transfer flavoprotein domain 30 206 1.0E-44 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMD27_11110 c5ce839f7d5e31d000d6fc29f6b9f883 249 SMART SM00893 23 211 6.1E-67 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMD27_02075 e980eae673a1382ca15265a1f1e247da 339 Pfam PF01757 Acyltransferase family 5 315 3.9E-12 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 208 6.7E-51 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 Pfam PF00814 Glycoprotease family 33 142 5.1E-24 T 11-10-2018 IPR000905 Gcp-like domain AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 Gene3D G3DSA:3.30.420.40 3 208 2.1E-57 T 11-10-2018 AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 SUPERFAMILY SSF53067 111 206 5.05E-14 T 11-10-2018 AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 Gene3D G3DSA:3.30.420.40 95 177 2.1E-57 T 11-10-2018 AMD27_03400 d0f3cdfa33095420cfe93fcc391fcb53 221 SUPERFAMILY SSF53067 1 103 2.24E-22 T 11-10-2018 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 1.7E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 1.7E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 1.7E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 1.7E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.7E-23 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 2.2E-49 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 11-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 SUPERFAMILY SSF47928 3 106 2.35E-23 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 1.4E-41 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 18.19 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_00640 79199d6ec5582644cc1e72c023765fe8 178 Gene3D G3DSA:1.10.520.20 2 107 1.2E-29 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMD27_06195 811949dbfcbffca2eb71f5c1487f312f 256 Gene3D G3DSA:2.60.120.620 10 256 1.4E-74 T 11-10-2018 AMD27_06195 811949dbfcbffca2eb71f5c1487f312f 256 Pfam PF10014 2OG-Fe dioxygenase 60 252 4.2E-61 T 11-10-2018 IPR018724 2OG-Fe dioxygenase AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 Gene3D G3DSA:3.40.50.12780 9 448 2.7E-120 T 11-10-2018 AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 208 219 - T 11-10-2018 IPR020845 AMP-binding, conserved site AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 Pfam PF00501 AMP-binding enzyme 26 458 1.5E-109 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 Gene3D G3DSA:3.30.300.30 452 553 3.5E-29 T 11-10-2018 AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 SUPERFAMILY SSF56801 16 551 4.97E-154 T 11-10-2018 AMD27_07640 628a60315e44db3c84a7a70baeb07845 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 467 542 1.1E-16 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 SUPERFAMILY SSF50129 4 159 3.93E-25 T 11-10-2018 IPR011032 GroES-like superfamily AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 87 6.6E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 Gene3D G3DSA:3.90.180.10 11 295 8.8E-63 T 11-10-2018 AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 SMART SM00829 12 296 2.2E-14 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 SUPERFAMILY SSF51735 112 245 1.19E-23 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 Gene3D G3DSA:3.40.50.720 123 247 8.8E-63 T 11-10-2018 AMD27_11905 0298019287b1d6af43d7314d8bca23f1 299 Pfam PF00107 Zinc-binding dehydrogenase 148 238 5.1E-15 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMD27_06755 1bd0a6b6753a499e85ef65ca529d44ba 158 Gene3D G3DSA:3.40.50.150 1 158 1.3E-12 T 11-10-2018 AMD27_06755 1bd0a6b6753a499e85ef65ca529d44ba 158 Pfam PF08241 Methyltransferase domain 20 115 3.7E-6 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMD27_06755 1bd0a6b6753a499e85ef65ca529d44ba 158 SUPERFAMILY SSF53335 3 154 1.51E-15 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 Gene3D G3DSA:3.40.50.620 2 178 1.2E-75 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 68 1.1E-9 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 Pfam PF02569 Pantoate-beta-alanine ligase 7 275 2.4E-103 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 6 277 1.2E-100 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 Gene3D G3DSA:3.30.1300.10 179 281 7.5E-29 T 11-10-2018 AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 SUPERFAMILY SSF52374 6 279 8.85E-104 T 11-10-2018 AMD27_02665 599eccb5fb11da00d4ff25adc628405e 285 Hamap MF_00158 Pantothenate synthetase [panC]. 2 277 39.598 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMD27_15400 cfa3be007a8ea8a06b01da2681302e26 172 Gene3D G3DSA:3.40.630.30 1 171 2.4E-48 T 11-10-2018 AMD27_15400 cfa3be007a8ea8a06b01da2681302e26 172 Pfam PF13420 Acetyltransferase (GNAT) domain 5 159 7.0E-21 T 11-10-2018 AMD27_15400 cfa3be007a8ea8a06b01da2681302e26 172 SUPERFAMILY SSF55729 4 168 1.86E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 4.3E-18 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 SUPERFAMILY SSF56645 37 279 4.19E-56 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Gene3D G3DSA:2.40.110.10 161 281 1.8E-92 T 11-10-2018 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Gene3D G3DSA:1.10.540.10 44 160 1.8E-92 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 1.6E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 1.4E-14 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 2.0E-6 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Gene3D G3DSA:1.20.140.10 282 451 1.8E-92 T 11-10-2018 AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 583 2.0E-23 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMD27_12920 a9f49372e9b3bdab0c04a89b26893be4 593 SUPERFAMILY SSF47203 288 474 2.09E-46 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_03190 8e1d2cf436f9720fed877ca958843508 270 Gene3D G3DSA:3.60.15.10 2 270 1.3E-48 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_03190 8e1d2cf436f9720fed877ca958843508 270 SUPERFAMILY SSF56281 5 264 2.62E-31 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMD27_03190 8e1d2cf436f9720fed877ca958843508 270 SMART SM00849 31 260 4.1E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_03190 8e1d2cf436f9720fed877ca958843508 270 Pfam PF00753 Metallo-beta-lactamase superfamily 31 218 4.3E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase AMD27_08690 417e32af823192aa531bd1dbfea8e1e2 457 Pfam PF03109 ABC1 family 128 232 3.7E-26 T 11-10-2018 IPR004147 UbiB domain AMD27_08690 417e32af823192aa531bd1dbfea8e1e2 457 SUPERFAMILY SSF56112 104 337 6.24E-11 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_07710 5643e1ec0635d499a7adcba7bee3a5c3 329 Gene3D G3DSA:2.40.110.10 111 180 6.5E-7 T 11-10-2018 AMD27_07710 5643e1ec0635d499a7adcba7bee3a5c3 329 SUPERFAMILY SSF56645 110 175 1.51E-5 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMD27_07710 5643e1ec0635d499a7adcba7bee3a5c3 329 Gene3D G3DSA:1.20.140.10 181 303 6.5E-7 T 11-10-2018 AMD27_07710 5643e1ec0635d499a7adcba7bee3a5c3 329 SUPERFAMILY SSF47203 189 302 1.9E-5 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMD27_03010 6334e421e4fae37876dcdcb4e9cfc125 289 PIRSF PIRSF000903 7 284 1.5E-93 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AMD27_03010 6334e421e4fae37876dcdcb4e9cfc125 289 SUPERFAMILY SSF56300 10 270 9.57E-50 T 11-10-2018 AMD27_03010 6334e421e4fae37876dcdcb4e9cfc125 289 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 9 272 1.2E-82 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AMD27_03010 6334e421e4fae37876dcdcb4e9cfc125 289 Pfam PF00149 Calcineurin-like phosphoesterase 11 156 3.1E-14 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_03010 6334e421e4fae37876dcdcb4e9cfc125 289 Gene3D G3DSA:3.60.21.10 9 281 7.8E-68 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_13770 32151bcfbe686fce5d4dc2eb2c464e46 83 Gene3D G3DSA:1.10.10.1130 1 79 1.9E-26 T 11-10-2018 AMD27_13770 32151bcfbe686fce5d4dc2eb2c464e46 83 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 6.4E-25 T 11-10-2018 IPR021250 Protein of unknown function DUF2789 AMD27_10885 9d8fa1116fdff3724b91dc592e598c54 394 Pfam PF06224 Winged helix DNA-binding domain 43 379 3.4E-59 T 11-10-2018 IPR009351 Protein of unknown function DUF1006 AMD27_17765 6471be604cfed58d32422986e4c8e138 174 Gene3D G3DSA:2.40.160.20 21 174 6.8E-15 T 11-10-2018 AMD27_17765 6471be604cfed58d32422986e4c8e138 174 Pfam PF13505 Outer membrane protein beta-barrel domain 6 159 2.1E-10 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel AMD27_17765 6471be604cfed58d32422986e4c8e138 174 SUPERFAMILY SSF56925 20 173 6.28E-13 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMD27_11510 ec65a860b8390e41655f13245433399d 312 Gene3D G3DSA:3.40.50.10330 5 139 3.7E-24 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMD27_11510 ec65a860b8390e41655f13245433399d 312 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 135 2.5E-22 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMD27_11510 ec65a860b8390e41655f13245433399d 312 SMART SM00046 7 139 8.2E-5 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMD27_11510 ec65a860b8390e41655f13245433399d 312 SUPERFAMILY SSF111331 6 307 1.22E-50 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMD27_11510 ec65a860b8390e41655f13245433399d 312 Gene3D G3DSA:2.60.200.40 140 297 4.5E-13 T 11-10-2018 AMD27_02580 08f816912c21c1d95e4cd9d53fc9c0e9 107 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 99 4.7E-35 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMD27_15905 8a6e6fa675b1b1f55b3ba98b1f9dfa4d 180 Pfam PF03358 NADPH-dependent FMN reductase 1 138 1.5E-31 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMD27_15905 8a6e6fa675b1b1f55b3ba98b1f9dfa4d 180 SUPERFAMILY SSF52218 1 174 1.3E-33 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_15905 8a6e6fa675b1b1f55b3ba98b1f9dfa4d 180 Gene3D G3DSA:3.40.50.360 1 179 3.8E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily AMD27_03300 f67abaa3e0ea0b1d16486f9a900b56e7 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 114 7.7E-24 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMD27_03300 f67abaa3e0ea0b1d16486f9a900b56e7 225 SUPERFAMILY SSF161098 15 214 2.75E-39 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_03300 f67abaa3e0ea0b1d16486f9a900b56e7 225 Gene3D G3DSA:1.10.3720.10 2 222 1.0E-47 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_03300 f67abaa3e0ea0b1d16486f9a900b56e7 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 221 3.5E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_11260 a588da059e4e9b637763378f2e8b6de5 174 Gene3D G3DSA:3.40.50.300 2 174 2.9E-7 T 11-10-2018 AMD27_11260 a588da059e4e9b637763378f2e8b6de5 174 SUPERFAMILY SSF52540 4 168 5.09E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_05960 6de83e21d40fd683e4bcac905cfc09b0 116 SUPERFAMILY SSF46785 7 107 1.43E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_05960 6de83e21d40fd683e4bcac905cfc09b0 116 Pfam PF01638 HxlR-like helix-turn-helix 20 106 1.1E-22 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMD27_05960 6de83e21d40fd683e4bcac905cfc09b0 116 Gene3D G3DSA:1.10.10.10 4 114 7.0E-39 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_01140 1e15208d5682e24a784f78a857da5393 143 Pfam PF13279 Thioesterase-like superfamily 15 129 5.6E-19 T 11-10-2018 AMD27_01140 1e15208d5682e24a784f78a857da5393 143 Gene3D G3DSA:3.10.129.10 1 137 5.6E-41 T 11-10-2018 AMD27_01140 1e15208d5682e24a784f78a857da5393 143 SUPERFAMILY SSF54637 3 132 8.38E-34 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_02255 21e70b1a0f35b245043c116774dca1e3 356 Pfam PF13387 Domain of unknown function (DUF4105) 137 291 9.7E-43 T 11-10-2018 IPR025178 Domain of unknown function DUF4105 AMD27_02005 25770587c81fdc9f0b136b4c39a748d7 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.549 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMD27_02005 25770587c81fdc9f0b136b4c39a748d7 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.5E-83 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMD27_02005 25770587c81fdc9f0b136b4c39a748d7 216 Pfam PF00694 Aconitase C-terminal domain 1 132 4.8E-38 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMD27_02005 25770587c81fdc9f0b136b4c39a748d7 216 SUPERFAMILY SSF52016 1 204 1.73E-60 T 11-10-2018 AMD27_02005 25770587c81fdc9f0b136b4c39a748d7 216 Gene3D G3DSA:3.20.19.10 1 184 4.8E-76 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 ProSitePatterns PS00171 Triosephosphate isomerase active site. 176 186 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 Pfam PF00121 Triosephosphate isomerase 9 255 6.0E-82 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 SUPERFAMILY SSF51351 7 259 1.44E-81 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 250 1.0E-53 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 Gene3D G3DSA:3.20.20.70 5 263 6.2E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_01465 6c5ddf9c900bd04a2c2de040a9d73274 263 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 6 258 54.735 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMD27_13755 2f5d24881364ca00c0a02866ccc120ce 200 SUPERFAMILY SSF51197 14 196 1.37E-6 T 11-10-2018 AMD27_13755 2f5d24881364ca00c0a02866ccc120ce 200 Gene3D G3DSA:2.60.120.620 11 198 9.2E-48 T 11-10-2018 AMD27_13755 2f5d24881364ca00c0a02866ccc120ce 200 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 106 194 3.2E-21 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMD27_13755 2f5d24881364ca00c0a02866ccc120ce 200 SMART SM00702 22 194 1.2E-9 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMD27_11950 4fef89a1d80e576a58717f8ab31c14cc 421 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 12 416 1.5E-179 T 11-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 AMD27_11950 4fef89a1d80e576a58717f8ab31c14cc 421 SUPERFAMILY SSF53448 40 327 2.59E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_11950 4fef89a1d80e576a58717f8ab31c14cc 421 Pfam PF13641 Glycosyltransferase like family 2 55 277 1.7E-42 T 11-10-2018 AMD27_11950 4fef89a1d80e576a58717f8ab31c14cc 421 Gene3D G3DSA:3.90.550.10 33 265 3.4E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 SMART SM00357 6 69 1.4E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 4.2E-28 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 PRINTS PR00050 Cold shock protein signature 7 22 4.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 PRINTS PR00050 Cold shock protein signature 27 36 4.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 PRINTS PR00050 Cold shock protein signature 42 60 4.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 SUPERFAMILY SSF50249 2 69 2.36E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 Gene3D G3DSA:2.40.50.140 1 70 2.1E-27 T 11-10-2018 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 PIRSF PIRSF002599 1 70 2.4E-22 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMD27_10110 a26bc79f69bc4015f31ba75800d1a459 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 11-10-2018 IPR019844 Cold-shock conserved site AMD27_04800 091491e7d3ea8c389d55722d7ebe4390 342 SUPERFAMILY SSF51726 7 340 2.62E-68 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMD27_04800 091491e7d3ea8c389d55722d7ebe4390 342 Gene3D G3DSA:3.20.20.210 1 342 9.7E-133 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMD27_04800 091491e7d3ea8c389d55722d7ebe4390 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 330 2.7E-36 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMD27_04800 091491e7d3ea8c389d55722d7ebe4390 342 PIRSF PIRSF005632 1 342 1.4E-197 T 11-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 SUPERFAMILY SSF46785 1 84 2.52E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 SUPERFAMILY SSF53850 102 300 1.24E-31 T 11-10-2018 AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 Pfam PF03466 LysR substrate binding domain 105 300 1.9E-30 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 Gene3D G3DSA:1.10.10.10 3 89 6.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_00210 9e7f8e854e5a2954bf6b28888b2112f2 307 Gene3D G3DSA:3.40.190.290 100 304 4.0E-33 T 11-10-2018 AMD27_05290 8c83668e6a015a05c8268b2cc69fbece 209 Pfam PF04299 Putative FMN-binding domain 1 164 2.9E-56 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type AMD27_05290 8c83668e6a015a05c8268b2cc69fbece 209 Gene3D G3DSA:2.30.110.10 1 205 6.8E-66 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMD27_05290 8c83668e6a015a05c8268b2cc69fbece 209 PIRSF PIRSF010372 1 209 2.2E-70 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type AMD27_05290 8c83668e6a015a05c8268b2cc69fbece 209 SUPERFAMILY SSF50475 13 186 3.93E-36 T 11-10-2018 AMD27_07645 98e459949551a55b603550bbc412d587 224 SUPERFAMILY SSF53335 8 219 7.1E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_07645 98e459949551a55b603550bbc412d587 224 Pfam PF13649 Methyltransferase domain 49 144 2.8E-16 T 11-10-2018 AMD27_07645 98e459949551a55b603550bbc412d587 224 Gene3D G3DSA:3.40.50.150 5 224 6.2E-39 T 11-10-2018 AMD27_09760 ddbb84f5f99b68cbb7a0663a56800336 406 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 406 23.717 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_09760 ddbb84f5f99b68cbb7a0663a56800336 406 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 405 3.9E-144 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_09760 ddbb84f5f99b68cbb7a0663a56800336 406 Pfam PF03616 Sodium/glutamate symporter 3 375 1.0E-132 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMD27_09975 ba1fe3dd2ffcb8910389d731b5562975 278 Pfam PF00069 Protein kinase domain 51 266 2.6E-13 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMD27_09975 ba1fe3dd2ffcb8910389d731b5562975 278 SMART SM00220 27 268 0.0063 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMD27_09975 ba1fe3dd2ffcb8910389d731b5562975 278 SUPERFAMILY SSF56112 39 265 1.8E-22 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_09975 ba1fe3dd2ffcb8910389d731b5562975 278 Gene3D G3DSA:1.10.510.10 103 277 1.2E-21 T 11-10-2018 AMD27_04110 78b93da7dc7a136a4a7dfc832e1740e4 674 SUPERFAMILY SSF56935 39 674 3.02E-125 T 11-10-2018 AMD27_04110 78b93da7dc7a136a4a7dfc832e1740e4 674 Gene3D G3DSA:2.170.130.10 32 167 2.1E-39 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMD27_04110 78b93da7dc7a136a4a7dfc832e1740e4 674 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 162 3.5E-29 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain AMD27_04110 78b93da7dc7a136a4a7dfc832e1740e4 674 Gene3D G3DSA:2.40.170.20 173 674 1.2E-111 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMD27_04110 78b93da7dc7a136a4a7dfc832e1740e4 674 Pfam PF00593 TonB dependent receptor 227 671 9.3E-52 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 Gene3D G3DSA:3.50.50.60 252 401 4.4E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 3.7E-34 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 3.7E-34 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 3.7E-34 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 3.7E-34 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 3.7E-34 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 SUPERFAMILY SSF46548 10 160 4.5E-38 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 Gene3D G3DSA:1.10.1060.10 12 145 1.7E-32 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 460 2.5E-25 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 472 3.3E-236 T 11-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 SUPERFAMILY SSF51971 148 402 8.24E-69 T 11-10-2018 AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 Gene3D G3DSA:3.50.50.60 146 238 7.2E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14595 97e47c28c2a16b81b1054a0e94071d67 473 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 28 135 1.6E-36 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AMD27_02990 e2bea9358a6116980abd3f56cd6d6e66 128 Gene3D G3DSA:3.30.230.10 2 128 7.6E-50 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMD27_02990 e2bea9358a6116980abd3f56cd6d6e66 128 ProSitePatterns PS00360 Ribosomal protein S9 signature. 67 85 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMD27_02990 e2bea9358a6116980abd3f56cd6d6e66 128 Pfam PF00380 Ribosomal protein S9/S16 8 128 1.4E-43 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMD27_02990 e2bea9358a6116980abd3f56cd6d6e66 128 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 128 30.745 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AMD27_02990 e2bea9358a6116980abd3f56cd6d6e66 128 SUPERFAMILY SSF54211 4 128 2.84E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 SUPERFAMILY SSF53474 5 287 2.43E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 Pfam PF00561 alpha/beta hydrolase fold 30 276 2.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 Gene3D G3DSA:3.40.50.1820 2 292 2.4E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 PRINTS PR00412 Epoxide hydrolase signature 102 115 3.5E-5 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 PRINTS PR00412 Epoxide hydrolase signature 265 287 3.5E-5 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_01265 d47b1200ae60ac3d2325676864eeb45e 293 PRINTS PR00412 Epoxide hydrolase signature 36 54 3.5E-5 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMD27_02730 904b3b59c9d34ae6d91e085f1ea496cd 141 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 6 132 1.0E-5 T 11-10-2018 IPR020143 Uncharacterised protein family, RP436 AMD27_02730 904b3b59c9d34ae6d91e085f1ea496cd 141 Pfam PF09335 SNARE associated Golgi protein 18 134 9.6E-14 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMD27_01430 2d0b768f30854da7187f5eea9779b98e 107 Pfam PF06865 Protein of unknown function (DUF1255) 12 104 1.2E-32 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 AMD27_01430 2d0b768f30854da7187f5eea9779b98e 107 Gene3D G3DSA:2.60.120.10 1 107 1.7E-45 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_01430 2d0b768f30854da7187f5eea9779b98e 107 SUPERFAMILY SSF51182 12 104 5.22E-31 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_01430 2d0b768f30854da7187f5eea9779b98e 107 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 11 106 25.102 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 AMD27_07300 8231d62cc339d237565b4e908e17d8a4 213 Pfam PF06078 Bacterial protein of unknown function (DUF937) 19 188 1.4E-14 T 11-10-2018 IPR009282 Protein of unknown function DUF937 AMD27_07300 8231d62cc339d237565b4e908e17d8a4 213 SUPERFAMILY SSF140804 66 212 2.22E-24 T 11-10-2018 IPR027405 YidB-like AMD27_07300 8231d62cc339d237565b4e908e17d8a4 213 Gene3D G3DSA:1.10.10.690 64 213 1.9E-24 T 11-10-2018 IPR027405 YidB-like AMD27_03215 0ed150bb4638c823c04633899f246d64 355 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 41 350 2.9E-111 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 SUPERFAMILY SSF142754 39 349 3.92E-108 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 Hamap MF_00567 Quinolinate synthase A [nadA]. 8 355 66.437 T 11-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 Gene3D G3DSA:3.40.50.10800 125 347 3.7E-96 T 11-10-2018 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 Gene3D G3DSA:3.40.50.10800 210 305 3.7E-96 T 11-10-2018 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 Pfam PF02445 Quinolinate synthetase A protein 42 348 1.2E-103 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMD27_03215 0ed150bb4638c823c04633899f246d64 355 Gene3D G3DSA:3.40.50.10800 42 330 3.7E-96 T 11-10-2018 AMD27_06765 3060fc2598396daab3b03e4263fe4962 199 SUPERFAMILY SSF54060 84 162 8.36E-14 T 11-10-2018 AMD27_06765 3060fc2598396daab3b03e4263fe4962 199 Pfam PF13392 HNH endonuclease 120 162 1.3E-12 T 11-10-2018 IPR003615 HNH nuclease AMD27_16525 448073eb152f9eb90cad8a5a20bf5280 132 Gene3D G3DSA:2.60.40.1250 17 132 4.3E-17 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMD27_16525 448073eb152f9eb90cad8a5a20bf5280 132 SUPERFAMILY SSF74863 23 131 9.29E-17 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMD27_16525 448073eb152f9eb90cad8a5a20bf5280 132 Pfam PF11412 Disulphide bond corrector protein DsbC 25 131 2.0E-12 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 Gene3D G3DSA:2.30.210.20 1 57 3.6E-21 T 11-10-2018 AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 32 201 4.2E-63 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 28 215 1.8E-51 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 SUPERFAMILY SSF55729 5 224 6.36E-79 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 Gene3D G3DSA:3.40.630.70 58 237 1.7E-57 T 11-10-2018 AMD27_03555 5e8c2734b331860828d3fb229a29365c 242 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 242 78.221 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMD27_15370 e1c1a8b635b756f3392263cb771f1ccc 200 Pfam PF00990 Diguanylate cyclase, GGDEF domain 40 191 1.5E-32 T 11-10-2018 IPR000160 GGDEF domain AMD27_15370 e1c1a8b635b756f3392263cb771f1ccc 200 Gene3D G3DSA:3.30.70.270 38 198 2.9E-38 T 11-10-2018 AMD27_15370 e1c1a8b635b756f3392263cb771f1ccc 200 SMART SM00267 27 195 1.3E-32 T 11-10-2018 IPR000160 GGDEF domain AMD27_15370 e1c1a8b635b756f3392263cb771f1ccc 200 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 40 192 1.2E-31 T 11-10-2018 IPR000160 GGDEF domain AMD27_15370 e1c1a8b635b756f3392263cb771f1ccc 200 SUPERFAMILY SSF55073 43 192 2.28E-32 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_03050 293d1312d09feac16654f67ca4b7bbbc 336 Gene3D G3DSA:3.60.21.10 115 313 6.6E-20 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like AMD27_03050 293d1312d09feac16654f67ca4b7bbbc 336 SUPERFAMILY SSF56300 116 335 5.26E-31 T 11-10-2018 AMD27_03050 293d1312d09feac16654f67ca4b7bbbc 336 Pfam PF00149 Calcineurin-like phosphoesterase 116 289 3.6E-12 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMD27_12225 285a1ef74d85d11c7b252b31f0a41b49 125 PIRSF PIRSF020555 2 120 1.3E-27 T 11-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AMD27_12225 285a1ef74d85d11c7b252b31f0a41b49 125 Pfam PF16068 Domain of unknown function (DUF4810) 26 111 9.0E-25 T 11-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 2 382 48.828 T 11-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 SMART SM00490 265 346 6.3E-29 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 Pfam PF00271 Helicase conserved C-terminal domain 238 346 1.4E-29 T 11-10-2018 IPR001650 Helicase, C-terminal AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 SMART SM00487 22 229 6.4E-58 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 Pfam PF00270 DEAD/DEAH box helicase 27 200 1.1E-46 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 Gene3D G3DSA:3.40.50.300 1 217 2.5E-74 T 11-10-2018 AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 SUPERFAMILY SSF52540 78 365 2.86E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_10105 1309c3d5647bd5a23da5cba0e29fa0d4 383 Gene3D G3DSA:3.40.50.300 220 380 4.2E-50 T 11-10-2018 AMD27_09800 323d18a67f5e2fcc2983ba7ca269e4e5 1505 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1158 1505 9.3E-44 T 11-10-2018 IPR007452 Translocation and assembly module TamB AMD27_01050 2f9d802abd2c491d12dd4e975f9ad8bd 398 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 344 368 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_01050 2f9d802abd2c491d12dd4e975f9ad8bd 398 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 385 2.6E-123 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_01050 2f9d802abd2c491d12dd4e975f9ad8bd 398 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 28 396 37.527 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_01050 2f9d802abd2c491d12dd4e975f9ad8bd 398 Pfam PF01098 Cell cycle protein 33 386 6.2E-101 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMD27_08990 1abd4012d188c749d57ab166b805eac5 226 Gene3D G3DSA:3.30.2010.10 126 218 3.4E-17 T 11-10-2018 AMD27_08990 1abd4012d188c749d57ab166b805eac5 226 Pfam PF01863 Protein of unknown function DUF45 19 217 4.3E-44 T 11-10-2018 IPR002725 Protein of unknown function DUF45 AMD27_00375 108aaa2fd75324885727e49ecfe186fc 298 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 7 291 8.8E-155 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMD27_00375 108aaa2fd75324885727e49ecfe186fc 298 SUPERFAMILY SSF53448 6 291 1.44E-91 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00375 108aaa2fd75324885727e49ecfe186fc 298 Gene3D G3DSA:3.90.550.10 4 298 5.4E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00375 108aaa2fd75324885727e49ecfe186fc 298 Pfam PF00483 Nucleotidyl transferase 7 243 6.4E-70 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMD27_05015 e37c2a61caf16805657117e48135cc06 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 3.7E-151 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMD27_05015 e37c2a61caf16805657117e48135cc06 411 Pfam PF12704 MacB-like periplasmic core domain 28 219 1.2E-13 T 11-10-2018 IPR025857 MacB-like periplasmic core domain AMD27_05015 e37c2a61caf16805657117e48135cc06 411 Pfam PF02687 FtsX-like permease family 298 404 6.4E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMD27_02385 097b861936ca588867bb4bf9ae518ab9 146 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 64 121 1.2E-9 T 11-10-2018 IPR018637 Domain of unknown function DUF2059 AMD27_06780 4db499bb036263c3b198d6873e974222 244 Pfam PF04404 ERF superfamily 16 161 2.9E-26 T 11-10-2018 IPR007499 Essential recombination function protein AMD27_10830 a64fbd838322307a35bca97f34a8c778 112 Pfam PF11804 Protein of unknown function (DUF3325) 7 102 1.1E-17 T 11-10-2018 IPR021762 Protein of unknown function DUF3325 AMD27_05010 def07d455e73279cf8e2b58d7cd12c10 193 Pfam PF07238 PilZ domain 110 183 4.3E-7 T 11-10-2018 IPR009875 PilZ domain GO:0035438 AMD27_05010 def07d455e73279cf8e2b58d7cd12c10 193 SUPERFAMILY SSF141371 110 191 6.87E-5 T 11-10-2018 AMD27_02880 7e7aa07801ed72874da714ab3e347cf0 322 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 153 312 1.1E-21 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMD27_02880 7e7aa07801ed72874da714ab3e347cf0 322 SMART SM00331 126 320 1.0E-9 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMD27_02880 7e7aa07801ed72874da714ab3e347cf0 322 Gene3D G3DSA:3.60.40.10 94 321 4.7E-41 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 SUPERFAMILY SSF51905 1 388 2.99E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 Gene3D G3DSA:3.50.50.60 156 250 2.2E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 Pfam PF00743 Flavin-binding monooxygenase-like 34 407 1.1E-11 T 11-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 Gene3D G3DSA:3.50.50.60 295 479 1.3E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 Gene3D G3DSA:3.50.50.60 1 155 2.6E-36 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 174 198 4.9E-5 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_13945 e004b0541c5bdd3d3afaa7465091972f 496 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 4.9E-5 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMD27_16165 a447622c492dce7c629082fdff39d643 106 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 73 6.7E-28 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMD27_16165 a447622c492dce7c629082fdff39d643 106 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 3.0E-23 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMD27_16165 a447622c492dce7c629082fdff39d643 106 Pfam PF01809 Haemolytic domain 3 68 8.4E-29 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMD27_16165 a447622c492dce7c629082fdff39d643 106 SMART SM01234 1 68 2.6E-42 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMD27_16165 a447622c492dce7c629082fdff39d643 106 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 23.735 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMD27_06820 57850cdcfd5e42d2fac3eac72f3bfcdb 82 ProDom PD057771 CRO REGULATORY TRANSCRIPTION CP-933R REPRESSOR DNA-BINDING REGULATION BACTERIOPHAGE PROTEIN REGULATOR 14 69 1.0E-10 T 11-10-2018 IPR020114 Cro repressor, HK022-type AMD27_06820 57850cdcfd5e42d2fac3eac72f3bfcdb 82 Gene3D G3DSA:1.10.260.40 1 75 3.4E-9 T 11-10-2018 AMD27_06820 57850cdcfd5e42d2fac3eac72f3bfcdb 82 SUPERFAMILY SSF47413 3 65 1.07E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_00605 afbddb286f0b036fdd95ee992a313b7b 262 SUPERFAMILY SSF52540 9 225 1.98E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_00605 afbddb286f0b036fdd95ee992a313b7b 262 SMART SM00382 38 213 3.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_00605 afbddb286f0b036fdd95ee992a313b7b 262 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_00605 afbddb286f0b036fdd95ee992a313b7b 262 Pfam PF00005 ABC transporter 29 156 8.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_00605 afbddb286f0b036fdd95ee992a313b7b 262 Gene3D G3DSA:3.40.50.300 6 237 1.1E-55 T 11-10-2018 AMD27_13865 7c9385ccb781e9a111703896304ad7f1 425 SUPERFAMILY SSF55961 74 198 7.99E-6 T 11-10-2018 AMD27_09690 793868988764b88d4d8b36387444aa3a 233 Pfam PF00483 Nucleotidyl transferase 2 228 4.0E-22 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMD27_09690 793868988764b88d4d8b36387444aa3a 233 Gene3D G3DSA:3.90.550.10 1 229 2.0E-58 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_09690 793868988764b88d4d8b36387444aa3a 233 SUPERFAMILY SSF53448 1 227 8.56E-57 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_10915 99d86295d0ead4a52c27a786bc153a55 221 SUPERFAMILY SSF161098 15 215 4.84E-37 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_10915 99d86295d0ead4a52c27a786bc153a55 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 217 6.8E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_10915 99d86295d0ead4a52c27a786bc153a55 221 Gene3D G3DSA:1.10.3720.10 2 221 5.2E-45 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_10915 99d86295d0ead4a52c27a786bc153a55 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 4.7E-19 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 351 1.2E-138 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 SUPERFAMILY SSF51726 1 355 6.02E-119 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 350 2.6E-134 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 352 48.982 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMD27_11330 d44ab5fc147daed525291f8c6f545447 357 Gene3D G3DSA:3.20.20.210 1 357 8.1E-162 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMD27_01080 169b87aaa90790c39981834e7eddde64 630 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 141 589 8.1E-221 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMD27_01080 169b87aaa90790c39981834e7eddde64 630 Pfam PF13667 ThiC-associated domain 26 102 3.4E-31 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMD27_01080 169b87aaa90790c39981834e7eddde64 630 Pfam PF01964 Radical SAM ThiC family 142 586 7.0E-206 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMD27_01080 169b87aaa90790c39981834e7eddde64 630 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 141 591 101.269 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMD27_01080 169b87aaa90790c39981834e7eddde64 630 Gene3D G3DSA:3.20.20.540 210 522 8.3E-157 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMD27_02670 971509316abe9a144fa6b98963038095 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 281 38.019 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMD27_02670 971509316abe9a144fa6b98963038095 283 PIRSF PIRSF005052 2 283 4.9E-109 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMD27_02670 971509316abe9a144fa6b98963038095 283 SUPERFAMILY SSF52540 3 157 2.86E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02670 971509316abe9a144fa6b98963038095 283 Pfam PF03668 P-loop ATPase protein family 4 280 2.0E-85 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 AMD27_02670 971509316abe9a144fa6b98963038095 283 Gene3D G3DSA:3.40.50.300 1 166 2.8E-5 T 11-10-2018 AMD27_15650 62aefb63e2fd384573e72c8d21fba017 695 SUPERFAMILY SSF53098 265 451 2.09E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_15650 62aefb63e2fd384573e72c8d21fba017 695 Pfam PF00665 Integrase core domain 264 403 8.8E-10 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMD27_15650 62aefb63e2fd384573e72c8d21fba017 695 Gene3D G3DSA:3.30.420.10 255 471 4.4E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMD27_06490 b84d1ea7096e6375eaa7f00c75d94350 382 Pfam PF03969 AFG1-like ATPase 17 369 1.3E-129 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 AMD27_06490 b84d1ea7096e6375eaa7f00c75d94350 382 SUPERFAMILY SSF52540 48 208 9.22E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06490 b84d1ea7096e6375eaa7f00c75d94350 382 Gene3D G3DSA:3.40.50.300 48 214 2.2E-22 T 11-10-2018 AMD27_06490 b84d1ea7096e6375eaa7f00c75d94350 382 Hamap MF_01919 Cell division protein ZapE [zapE]. 16 374 50.346 T 11-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 AMD27_04505 c12ec502f9bcca5a0f8031fe53dccad2 193 Gene3D G3DSA:2.50.20.10 23 192 1.9E-35 T 11-10-2018 AMD27_04505 c12ec502f9bcca5a0f8031fe53dccad2 193 SUPERFAMILY SSF89392 22 191 2.31E-35 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMD27_04505 c12ec502f9bcca5a0f8031fe53dccad2 193 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 35 180 1.9E-29 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AMD27_04505 c12ec502f9bcca5a0f8031fe53dccad2 193 Pfam PF03550 Outer membrane lipoprotein LolB 42 192 5.3E-39 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 16 268 2.6E-102 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 4.9E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 PRINTS PR00987 Glutamyl-tRNA synthetase signature 48 61 4.9E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 4.9E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 31 4.9E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 19 250 1.1E-41 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 SUPERFAMILY SSF52374 16 291 7.11E-76 T 11-10-2018 AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 Gene3D G3DSA:3.40.50.620 91 227 3.2E-98 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 Gene3D G3DSA:3.40.50.620 16 290 3.2E-98 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_01060 c9b887bc293d5f55dbc3ac9e37c795e2 300 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 16 296 38.152 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 AMD27_08335 806205d0a46e714ea92ce2e2189b3b12 167 Pfam PF05069 Phage virion morphogenesis family 11 159 7.8E-19 T 11-10-2018 IPR006522 Phage virion morphogensis protein AMD27_12010 337082c40156e4c0d3990171b84b00fe 403 SUPERFAMILY SSF103473 7 400 2.09E-56 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_12010 337082c40156e4c0d3990171b84b00fe 403 Pfam PF07690 Major Facilitator Superfamily 19 361 1.6E-42 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_12010 337082c40156e4c0d3990171b84b00fe 403 Gene3D G3DSA:1.20.1720.10 14 394 8.7E-99 T 11-10-2018 AMD27_12010 337082c40156e4c0d3990171b84b00fe 403 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 13 389 1.8E-81 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMD27_02280 dcfe408f636ae67a9a634b7c3454a077 276 Pfam PF09234 Domain of unknown function (DUF1963) 41 275 8.2E-45 T 11-10-2018 IPR015315 Protein of unknown function DUF1963 AMD27_02280 dcfe408f636ae67a9a634b7c3454a077 276 SUPERFAMILY SSF103032 6 275 1.44E-48 T 11-10-2018 IPR035948 YwqG-like superfamily AMD27_02280 dcfe408f636ae67a9a634b7c3454a077 276 Gene3D G3DSA:2.30.320.10 2 276 2.7E-64 T 11-10-2018 IPR035948 YwqG-like superfamily AMD27_11435 eb8dd33e890e58309c5aeda2d74cc2dc 307 SUPERFAMILY SSF52402 26 244 2.05E-53 T 11-10-2018 AMD27_11435 eb8dd33e890e58309c5aeda2d74cc2dc 307 Gene3D G3DSA:3.40.50.620 20 297 7.6E-46 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMD27_11435 eb8dd33e890e58309c5aeda2d74cc2dc 307 PIRSF PIRSF004976 6 296 2.7E-70 T 11-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 AMD27_11435 eb8dd33e890e58309c5aeda2d74cc2dc 307 Pfam PF01171 PP-loop family 49 213 6.7E-15 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMD27_11435 eb8dd33e890e58309c5aeda2d74cc2dc 307 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 17 279 54.953 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 AMD27_05165 d8d0a5e5230e36f23fbf5fa41dc070f9 88 SUPERFAMILY SSF54862 5 73 1.48E-17 T 11-10-2018 AMD27_05165 d8d0a5e5230e36f23fbf5fa41dc070f9 88 Pfam PF00037 4Fe-4S binding domain 5 25 7.8E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMD27_05165 d8d0a5e5230e36f23fbf5fa41dc070f9 88 Gene3D G3DSA:3.30.70.20 2 81 4.6E-30 T 11-10-2018 AMD27_05165 d8d0a5e5230e36f23fbf5fa41dc070f9 88 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_00610 c5940ae53f19e8ca10fe03e64b158364 163 Gene3D G3DSA:3.30.1490.190 107 163 3.5E-13 T 11-10-2018 AMD27_00610 c5940ae53f19e8ca10fe03e64b158364 163 Gene3D G3DSA:1.10.10.10 17 105 5.7E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_00610 c5940ae53f19e8ca10fe03e64b158364 163 Pfam PF01475 Ferric uptake regulator family 35 154 6.8E-10 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMD27_00610 c5940ae53f19e8ca10fe03e64b158364 163 SUPERFAMILY SSF46785 26 159 2.85E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_12515 83fabc88d58f517aeb72769377f84711 263 Pfam PF02616 Segregation and condensation protein ScpA 53 250 2.8E-20 T 11-10-2018 IPR003768 Segregation and condensation protein A AMD27_07555 265d931e367ace990034f0ecff31613d 334 Gene3D G3DSA:3.30.1110.10 14 133 4.8E-77 T 11-10-2018 AMD27_07555 265d931e367ace990034f0ecff31613d 334 PRINTS PR00990 Ribokinase signature 244 255 1.5E-7 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMD27_07555 265d931e367ace990034f0ecff31613d 334 PRINTS PR00990 Ribokinase signature 206 221 1.5E-7 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMD27_07555 265d931e367ace990034f0ecff31613d 334 PRINTS PR00990 Ribokinase signature 57 76 1.5E-7 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMD27_07555 265d931e367ace990034f0ecff31613d 334 SUPERFAMILY SSF53613 1 317 2.96E-73 T 11-10-2018 IPR029056 Ribokinase-like AMD27_07555 265d931e367ace990034f0ecff31613d 334 Gene3D G3DSA:3.40.1190.20 11 314 4.8E-77 T 11-10-2018 IPR029056 Ribokinase-like AMD27_07555 265d931e367ace990034f0ecff31613d 334 Pfam PF00294 pfkB family carbohydrate kinase 47 317 2.1E-52 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB AMD27_03655 5e294ff5bdcaf6c76739da99f7037d95 145 SUPERFAMILY SSF46785 6 134 2.33E-43 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_03655 5e294ff5bdcaf6c76739da99f7037d95 145 Gene3D G3DSA:1.10.10.10 1 84 1.3E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_03655 5e294ff5bdcaf6c76739da99f7037d95 145 Gene3D G3DSA:3.30.1490.190 85 142 5.5E-23 T 11-10-2018 AMD27_03655 5e294ff5bdcaf6c76739da99f7037d95 145 Pfam PF01475 Ferric uptake regulator family 10 130 3.5E-44 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SUPERFAMILY SSF48452 54 363 1.27E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 Pfam PF13432 Tetratricopeptide repeat 243 296 0.0019 T 11-10-2018 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 Gene3D G3DSA:1.25.40.10 420 556 1.6E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SUPERFAMILY SSF48452 375 544 2.87E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 Pfam PF14559 Tetratricopeptide repeat 80 138 1.8E-5 T 11-10-2018 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 Gene3D G3DSA:1.25.40.10 144 409 5.2E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 Gene3D G3DSA:1.25.40.10 71 143 1.3E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SMART SM00028 373 406 12.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SMART SM00028 170 203 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SMART SM00028 104 137 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SMART SM00028 476 509 320.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_04510 8b91de9a4095de767095ada9e37e3066 560 SMART SM00028 204 237 76.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMD27_15970 14dcb4d4737cb2b500cfd035c14ad6f3 170 PIRSF PIRSF028301 2 170 6.5E-63 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD27_15970 14dcb4d4737cb2b500cfd035c14ad6f3 170 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 164 3.4E-57 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD27_15970 14dcb4d4737cb2b500cfd035c14ad6f3 170 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 8.1E-60 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD27_14420 43e0bb327498456c05327e4d7f80ec24 519 Pfam PF00795 Carbon-nitrogen hydrolase 229 480 3.4E-30 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMD27_14420 43e0bb327498456c05327e4d7f80ec24 519 Gene3D G3DSA:3.60.110.10 223 482 4.8E-15 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_14420 43e0bb327498456c05327e4d7f80ec24 519 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 20 496 21.985 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMD27_14420 43e0bb327498456c05327e4d7f80ec24 519 SUPERFAMILY SSF56317 220 490 6.8E-46 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMD27_14420 43e0bb327498456c05327e4d7f80ec24 519 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 73 458 2.3E-95 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMD27_13240 15f8b4f555c7952f65ff1f7b8f2cef8a 224 Gene3D G3DSA:1.10.10.10 48 129 2.0E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_14280 d938c31f2594bf9d7b7adccadd0ed9b3 428 SUPERFAMILY SSF56801 6 386 9.06E-8 T 11-10-2018 AMD27_04080 3a6b20c10e2463ca31d42f7252ab93f2 313 Pfam PF13643 Domain of unknown function (DUF4145) 133 207 3.5E-14 T 11-10-2018 IPR025285 Domain of unknown function DUF4145 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 Gene3D G3DSA:3.40.309.10 266 461 4.0E-163 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 Gene3D G3DSA:3.40.605.10 23 489 4.0E-163 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 Pfam PF00171 Aldehyde dehydrogenase family 27 490 1.9E-163 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMD27_09280 4a7eaf91a5e2a7acb71683ed0cb0ed03 503 SUPERFAMILY SSF53720 14 495 1.13E-162 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMD27_07005 f96021d3d63dbfc97c5a484fb062707a 141 SUPERFAMILY SSF54001 7 137 2.94E-17 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMD27_07005 f96021d3d63dbfc97c5a484fb062707a 141 Pfam PF00877 NlpC/P60 family 16 123 3.1E-8 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain AMD27_07005 f96021d3d63dbfc97c5a484fb062707a 141 Gene3D G3DSA:3.90.1720.10 3 140 2.1E-19 T 11-10-2018 AMD27_06120 9c6a6b8e08c32b3e8f33258403a9199b 515 SUPERFAMILY SSF56954 106 496 2.75E-66 T 11-10-2018 AMD27_06120 9c6a6b8e08c32b3e8f33258403a9199b 515 Gene3D G3DSA:1.20.1600.10 110 515 1.5E-64 T 11-10-2018 AMD27_06120 9c6a6b8e08c32b3e8f33258403a9199b 515 Pfam PF02321 Outer membrane efflux protein 320 493 4.8E-18 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_06120 9c6a6b8e08c32b3e8f33258403a9199b 515 Pfam PF02321 Outer membrane efflux protein 111 290 8.5E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_09920 07ba80d737452801e735d206e869853c 341 Gene3D G3DSA:3.40.50.300 1 232 6.1E-74 T 11-10-2018 AMD27_09920 07ba80d737452801e735d206e869853c 341 Gene3D G3DSA:3.30.70.260 233 339 1.5E-25 T 11-10-2018 AMD27_09920 07ba80d737452801e735d206e869853c 341 SUPERFAMILY SSF55021 250 335 8.93E-19 T 11-10-2018 AMD27_09920 07ba80d737452801e735d206e869853c 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_09920 07ba80d737452801e735d206e869853c 341 SMART SM00382 30 218 2.1E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_09920 07ba80d737452801e735d206e869853c 341 Pfam PF09383 NIL domain 265 335 9.3E-18 T 11-10-2018 IPR018449 NIL domain AMD27_09920 07ba80d737452801e735d206e869853c 341 SUPERFAMILY SSF52540 1 240 1.19E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_09920 07ba80d737452801e735d206e869853c 341 Pfam PF00005 ABC transporter 21 169 7.3E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_09920 07ba80d737452801e735d206e869853c 341 SMART SM00930 262 337 9.4E-18 T 11-10-2018 IPR018449 NIL domain AMD27_06900 14ad55403e9a65a364e854d86d0f6a2b 435 Pfam PF06381 Protein of unknown function (DUF1073) 38 381 1.6E-94 T 11-10-2018 IPR024459 Protein of unknown function DUF1073 AMD27_06900 14ad55403e9a65a364e854d86d0f6a2b 435 TIGRFAM TIGR01555 phge_rel_HI1409: phage-associated protein, HI1409 family 11 403 1.5E-68 T 11-10-2018 IPR006445 Phage-associated protein HI1409 AMD27_13590 39ec415ded4c6b60265261408db7edc7 244 Pfam PF12811 Bax inhibitor 1 like 6 239 1.9E-61 T 11-10-2018 IPR010539 Protein of unknown function UCP009160 AMD27_13590 39ec415ded4c6b60265261408db7edc7 244 PIRSF PIRSF009160 1 244 1.2E-75 T 11-10-2018 IPR010539 Protein of unknown function UCP009160 AMD27_10165 56a78ffd62b1e3cb7ba36531747ec359 825 Gene3D G3DSA:3.60.10.10 466 781 8.5E-39 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_10165 56a78ffd62b1e3cb7ba36531747ec359 825 Pfam PF00932 Lamin Tail Domain 20 126 1.5E-9 T 11-10-2018 IPR001322 Lamin tail domain AMD27_10165 56a78ffd62b1e3cb7ba36531747ec359 825 SUPERFAMILY SSF56219 459 784 2.88E-32 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_14095 e30348da61be8a39fe449f527bd7a580 400 Gene3D G3DSA:3.90.1150.10 259 394 8.0E-29 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_14095 e30348da61be8a39fe449f527bd7a580 400 PIRSF PIRSF001434 1 395 4.0E-100 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_14095 e30348da61be8a39fe449f527bd7a580 400 SUPERFAMILY SSF53383 24 393 3.21E-73 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_14095 e30348da61be8a39fe449f527bd7a580 400 Gene3D G3DSA:3.40.640.10 1 256 5.5E-53 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_14095 e30348da61be8a39fe449f527bd7a580 400 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 392 1.8E-74 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMD27_01525 457d4b93279cb09b8fd18e795bfa788b 196 SUPERFAMILY SSF140478 27 184 2.22E-53 T 11-10-2018 IPR023353 LemA-like domain superfamily AMD27_01525 457d4b93279cb09b8fd18e795bfa788b 196 Gene3D G3DSA:1.20.1440.20 18 195 3.3E-64 T 11-10-2018 IPR023353 LemA-like domain superfamily AMD27_01525 457d4b93279cb09b8fd18e795bfa788b 196 Pfam PF04011 LemA family 13 195 2.5E-67 T 11-10-2018 IPR007156 LemA AMD27_02540 8f96035302c604ce318dafe4972537be 448 Gene3D G3DSA:2.60.60.30 18 172 2.1E-23 T 11-10-2018 AMD27_02540 8f96035302c604ce318dafe4972537be 448 Pfam PF02342 TerD domain 1 174 2.4E-26 T 11-10-2018 IPR003325 TerD domain AMD27_02540 8f96035302c604ce318dafe4972537be 448 SUPERFAMILY SSF53300 247 405 1.32E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMD27_02540 8f96035302c604ce318dafe4972537be 448 SMART SM00327 246 419 4.3E-5 T 11-10-2018 IPR002035 von Willebrand factor, type A AMD27_02540 8f96035302c604ce318dafe4972537be 448 Pfam PF10138 vWA found in TerF C terminus 247 446 3.0E-76 T 11-10-2018 IPR019303 vWA found in TerF C terminus AMD27_06480 6af36903b2d73a0130238025f0aa812e 498 SUPERFAMILY SSF51905 12 480 2.0E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06480 6af36903b2d73a0130238025f0aa812e 498 Pfam PF00743 Flavin-binding monooxygenase-like 15 347 1.6E-23 T 11-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMD27_06480 6af36903b2d73a0130238025f0aa812e 498 Gene3D G3DSA:3.50.50.60 302 498 7.3E-37 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06480 6af36903b2d73a0130238025f0aa812e 498 Gene3D G3DSA:3.50.50.60 2 177 4.1E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_06480 6af36903b2d73a0130238025f0aa812e 498 SUPERFAMILY SSF51905 279 463 1.63E-19 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 160 8.0E-13 T 11-10-2018 AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 SUPERFAMILY SSF56784 1 196 3.25E-44 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 Pfam PF00702 haloacid dehalogenase-like hydrolase 57 164 1.6E-10 T 11-10-2018 AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 Gene3D G3DSA:3.40.50.1000 3 191 3.4E-77 T 11-10-2018 IPR023214 HAD superfamily AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 201 3.9E-95 T 11-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 AMD27_11845 f220f5fe400cad522687d0b1b1450201 205 Gene3D G3DSA:3.90.1470.10 13 128 3.4E-77 T 11-10-2018 AMD27_03065 510b82488706c426260fc65cdc764e8c 411 SUPERFAMILY SSF53335 178 319 9.18E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_03065 510b82488706c426260fc65cdc764e8c 411 Pfam PF13679 Methyltransferase domain 168 303 9.3E-30 T 11-10-2018 IPR025714 Methyltransferase domain AMD27_03065 510b82488706c426260fc65cdc764e8c 411 Gene3D G3DSA:3.40.50.150 157 290 3.5E-11 T 11-10-2018 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 260 6.4E-100 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 6 266 2.1E-95 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 Gene3D G3DSA:3.20.20.60 1 269 3.6E-98 T 11-10-2018 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 PIRSF PIRSF000388 1 268 6.0E-92 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 SUPERFAMILY SSF51621 2 265 2.24E-95 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_02660 89d8af8c2b613c6db297ef016301ea1d 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 265 39.794 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMD27_14460 4e7899c12ef94d2316d7ac092a86f0f8 112 Gene3D G3DSA:1.10.1660.10 20 110 1.7E-19 T 11-10-2018 AMD27_14460 4e7899c12ef94d2316d7ac092a86f0f8 112 Pfam PF13591 MerR HTH family regulatory protein 27 105 8.3E-15 T 11-10-2018 AMD27_14835 e3b00641d7d56ad7c70f026aaf2c0f4e 209 Pfam PF00313 'Cold-shock' DNA-binding domain 8 67 3.5E-9 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMD27_14835 e3b00641d7d56ad7c70f026aaf2c0f4e 209 SMART SM00357 5 69 2.9E-4 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 AMD27_14835 e3b00641d7d56ad7c70f026aaf2c0f4e 209 Gene3D G3DSA:2.40.50.140 2 78 4.5E-12 T 11-10-2018 AMD27_14835 e3b00641d7d56ad7c70f026aaf2c0f4e 209 SUPERFAMILY SSF50249 8 70 1.13E-10 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMD27_14835 e3b00641d7d56ad7c70f026aaf2c0f4e 209 Pfam PF06961 Protein of unknown function (DUF1294) 128 182 1.1E-22 T 11-10-2018 IPR010718 Protein of unknown function DUF1294 AMD27_13005 6d114701ead8df8283c1d427870ea761 328 Pfam PF17101 Stealth protein CR1, conserved region 1 5 26 3.4E-7 T 11-10-2018 IPR031358 Stealth protein CR1, conserved region 1 AMD27_13005 6d114701ead8df8283c1d427870ea761 328 Pfam PF11380 Stealth protein CR2, conserved region 2 39 150 7.1E-30 T 11-10-2018 IPR021520 Stealth protein CR2, conserved region 2 GO:0016772 AMD27_03045 c06d00a53af850885c106b943769379d 543 Gene3D G3DSA:3.30.870.10 306 524 7.0E-39 T 11-10-2018 AMD27_03045 c06d00a53af850885c106b943769379d 543 SMART SM00155 184 211 0.025 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMD27_03045 c06d00a53af850885c106b943769379d 543 SMART SM00155 434 461 2.8E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMD27_03045 c06d00a53af850885c106b943769379d 543 Gene3D G3DSA:3.30.870.10 85 273 9.8E-35 T 11-10-2018 AMD27_03045 c06d00a53af850885c106b943769379d 543 SUPERFAMILY SSF56024 38 269 8.16E-41 T 11-10-2018 AMD27_03045 c06d00a53af850885c106b943769379d 543 Pfam PF13091 PLD-like domain 335 486 4.8E-23 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMD27_03045 c06d00a53af850885c106b943769379d 543 Pfam PF13091 PLD-like domain 94 243 1.7E-16 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMD27_03045 c06d00a53af850885c106b943769379d 543 SUPERFAMILY SSF56024 303 499 7.65E-31 T 11-10-2018 AMD27_09745 28df4a156cf4a65ca61febf302a76251 147 SUPERFAMILY SSF55729 1 142 7.81E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_09745 28df4a156cf4a65ca61febf302a76251 147 PIRSF PIRSF037663 1 144 8.1E-11 T 11-10-2018 IPR017255 Acetyltransferase, GNAT, predicted AMD27_09745 28df4a156cf4a65ca61febf302a76251 147 Pfam PF00583 Acetyltransferase (GNAT) family 30 133 1.5E-14 T 11-10-2018 IPR000182 GNAT domain AMD27_09745 28df4a156cf4a65ca61febf302a76251 147 Gene3D G3DSA:3.40.630.30 2 139 8.0E-34 T 11-10-2018 AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 SUPERFAMILY SSF52540 1 195 1.86E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 Gene3D G3DSA:3.40.50.300 1 204 2.1E-52 T 11-10-2018 AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 Pfam PF13500 AAA domain 5 195 1.0E-31 T 11-10-2018 AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 175 6.2E-48 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 PIRSF PIRSF006755 1 204 1.0E-55 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMD27_12530 e5d0a777644b44442ec07029b48f2986 212 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 205 24.414 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMD27_15945 1c14e5a8c5bf659b9df0e732b9bf84f0 331 Pfam PF06996 Type VI secretion, TssG 20 311 6.7E-62 T 11-10-2018 IPR010732 Type VI secretion, TssG-like AMD27_15945 1c14e5a8c5bf659b9df0e732b9bf84f0 331 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 20 302 9.2E-59 T 11-10-2018 IPR010732 Type VI secretion, TssG-like AMD27_13780 c4bc1b2bcac1af7170dc0fe3a7fc7e37 219 Gene3D G3DSA:3.90.730.10 33 217 8.6E-9 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMD27_13780 c4bc1b2bcac1af7170dc0fe3a7fc7e37 219 SUPERFAMILY SSF55895 35 214 9.81E-13 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 Gene3D G3DSA:3.10.180.10 1 132 1.4E-48 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 SUPERFAMILY SSF54593 1 128 9.13E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 129 2.5E-64 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMD27_10455 d09f25577c75f4eba19b14b7edd85ba2 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 2.3E-21 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMD27_05250 92e932374ab7fc61aa301d8197e3cf8d 313 Gene3D G3DSA:3.40.50.10330 41 302 2.0E-90 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMD27_05250 92e932374ab7fc61aa301d8197e3cf8d 313 SUPERFAMILY SSF111331 22 305 6.67E-87 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMD27_05250 92e932374ab7fc61aa301d8197e3cf8d 313 Pfam PF01513 ATP-NAD kinase 63 284 5.6E-64 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMD27_05250 92e932374ab7fc61aa301d8197e3cf8d 313 Hamap MF_00361 NAD kinase [nadK]. 21 302 32.474 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMD27_05250 92e932374ab7fc61aa301d8197e3cf8d 313 Gene3D G3DSA:2.60.200.30 143 279 2.0E-90 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMD27_08450 92de01bf717552e366dbe327841ac764 134 Gene3D G3DSA:3.40.960.10 31 134 1.4E-9 T 11-10-2018 AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 Gene3D G3DSA:3.30.300.160 68 147 1.5E-6 T 11-10-2018 AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 Gene3D G3DSA:3.30.450.90 156 291 9.7E-48 T 11-10-2018 AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 Pfam PF00437 Type II/IV secretion system protein 192 458 6.4E-90 T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 SUPERFAMILY SSF52540 179 567 7.87E-99 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 SUPERFAMILY SSF160246 8 147 5.23E-33 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 386 400 - T 11-10-2018 IPR001482 Type II/IV secretion system protein AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 17 149 2.6E-15 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 Gene3D G3DSA:3.40.50.300 294 569 3.1E-104 T 11-10-2018 AMD27_01460 fb04313d678ac7ec2bfecee3c693adab 569 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 13 568 1.6E-259 T 11-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 AMD27_16930 a04a1025e6b679c0895d8f96a4d47461 680 Pfam PF13307 Helicase C-terminal domain 490 643 2.9E-10 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMD27_16930 a04a1025e6b679c0895d8f96a4d47461 680 SUPERFAMILY SSF52540 49 577 1.52E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16930 a04a1025e6b679c0895d8f96a4d47461 680 Gene3D G3DSA:3.40.50.300 24 294 1.1E-20 T 11-10-2018 AMD27_16930 a04a1025e6b679c0895d8f96a4d47461 680 Gene3D G3DSA:3.40.50.300 473 656 5.6E-13 T 11-10-2018 AMD27_16930 a04a1025e6b679c0895d8f96a4d47461 680 SMART SM00491 498 644 2.0E-4 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMD27_01765 9764be7ab31134f3348d3716055eb841 720 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 13 712 3.9E-197 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK AMD27_01765 9764be7ab31134f3348d3716055eb841 720 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 712 3.7E-204 T 11-10-2018 IPR010019 Integral membrane protein, YccS AMD27_01765 9764be7ab31134f3348d3716055eb841 720 Pfam PF13515 Fusaric acid resistance protein-like 414 534 4.2E-20 T 11-10-2018 AMD27_01765 9764be7ab31134f3348d3716055eb841 720 Pfam PF12805 FUSC-like inner membrane protein yccS 68 346 2.2E-83 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal AMD27_02145 8bf253eb32ca5d7e8260466f14832d7e 81 Pfam PF04102 SlyX 16 81 1.5E-15 T 11-10-2018 IPR007236 SlyX AMD27_12540 52ae99da1b65004bc17b20444869dcbc 385 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMD27_12540 52ae99da1b65004bc17b20444869dcbc 385 Gene3D G3DSA:3.40.640.10 56 292 1.4E-109 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_12540 52ae99da1b65004bc17b20444869dcbc 385 SUPERFAMILY SSF53383 3 385 1.34E-84 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_12540 52ae99da1b65004bc17b20444869dcbc 385 Pfam PF00155 Aminotransferase class I and II 39 383 6.6E-50 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_12540 52ae99da1b65004bc17b20444869dcbc 385 Gene3D G3DSA:3.90.1150.10 40 382 1.4E-109 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_12015 2557d102aa38669a2282f16fb4a95e12 715 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 7 708 2.6E-207 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK AMD27_12015 2557d102aa38669a2282f16fb4a95e12 715 Pfam PF13515 Fusaric acid resistance protein-like 405 525 2.8E-21 T 11-10-2018 AMD27_12015 2557d102aa38669a2282f16fb4a95e12 715 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 7 708 1.4E-224 T 11-10-2018 IPR010019 Integral membrane protein, YccS AMD27_12015 2557d102aa38669a2282f16fb4a95e12 715 Pfam PF12805 FUSC-like inner membrane protein yccS 63 344 1.5E-84 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal AMD27_16530 ddf8434c9565b51b2a888e8806c9efba 389 SUPERFAMILY SSF140990 204 371 3.01E-14 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMD27_16530 ddf8434c9565b51b2a888e8806c9efba 389 Gene3D G3DSA:1.20.58.760 203 381 1.9E-12 T 11-10-2018 AMD27_16530 ddf8434c9565b51b2a888e8806c9efba 389 Pfam PF01434 Peptidase family M41 197 308 2.9E-7 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMD27_07720 472329d5d1bd1f1993505e0aece33d15 199 Pfam PF05401 Nodulation protein S (NodS) 15 140 5.0E-23 T 11-10-2018 IPR008715 SAM-dependent methyltransferase, NodS-related GO:0008757|GO:0009312|GO:0009877 AMD27_07720 472329d5d1bd1f1993505e0aece33d15 199 SUPERFAMILY SSF53335 6 149 2.89E-27 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_07720 472329d5d1bd1f1993505e0aece33d15 199 Gene3D G3DSA:3.40.50.150 24 187 2.0E-40 T 11-10-2018 AMD27_00320 85e3205e8bcd19bdc13b80db3f636668 619 Pfam PF00884 Sulfatase 257 551 3.3E-33 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMD27_00320 85e3205e8bcd19bdc13b80db3f636668 619 Gene3D G3DSA:3.40.720.10 253 553 7.2E-39 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMD27_00320 85e3205e8bcd19bdc13b80db3f636668 619 SUPERFAMILY SSF53649 257 494 2.8E-18 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMD27_05990 d5c96292d0621def64db14c1cb13d1e0 349 Pfam PF03060 Nitronate monooxygenase 4 342 5.5E-73 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMD27_05990 d5c96292d0621def64db14c1cb13d1e0 349 Gene3D G3DSA:3.20.20.70 1 345 4.0E-96 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05990 d5c96292d0621def64db14c1cb13d1e0 349 SUPERFAMILY SSF51412 2 333 8.24E-54 T 11-10-2018 AMD27_07100 e21a4f0c7b6d3896b14785d9c8115f1b 430 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 4.3E-140 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AMD27_07100 e21a4f0c7b6d3896b14785d9c8115f1b 430 Pfam PF05525 Branched-chain amino acid transport protein 7 428 2.9E-143 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AMD27_16640 08c3b9ebca1c7832378b44ac86362dc9 211 TIGRFAM TIGR02743 TraW: type-F conjugative transfer system protein TraW 18 209 2.0E-52 T 11-10-2018 IPR014114 Type-F conjugative transfer system protein TraW AMD27_02535 1635bb9499f4221d4e14e86c7285efb2 192 Pfam PF02342 TerD domain 1 188 2.5E-80 T 11-10-2018 IPR003325 TerD domain AMD27_02535 1635bb9499f4221d4e14e86c7285efb2 192 Gene3D G3DSA:2.60.60.30 19 187 1.9E-72 T 11-10-2018 AMD27_12895 84cdc82bb8a1847d5b42447ac5a95ff0 450 Gene3D G3DSA:1.20.1740.10 7 450 7.0E-62 T 11-10-2018 AMD27_12895 84cdc82bb8a1847d5b42447ac5a95ff0 450 PIRSF PIRSF006060 2 450 1.3E-76 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_12895 84cdc82bb8a1847d5b42447ac5a95ff0 450 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_12895 84cdc82bb8a1847d5b42447ac5a95ff0 450 Pfam PF00324 Amino acid permease 16 442 8.4E-110 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.1E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 170 0.0046 T 11-10-2018 AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 Gene3D G3DSA:3.40.50.720 2 238 9.3E-54 T 11-10-2018 AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 SUPERFAMILY SSF51735 3 215 3.72E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 Pfam PF00106 short chain dehydrogenase 3 194 4.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 6.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_08140 1016174616b3752852ce65d2c85bf1f6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_15290 54ef33fc4ba0bd6e5d55eb7b41f2118e 230 Gene3D G3DSA:2.70.70.10 77 229 2.2E-43 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_15290 54ef33fc4ba0bd6e5d55eb7b41f2118e 230 Pfam PF01551 Peptidase family M23 128 222 1.3E-30 T 11-10-2018 IPR016047 Peptidase M23 AMD27_15290 54ef33fc4ba0bd6e5d55eb7b41f2118e 230 SUPERFAMILY SSF51261 89 226 8.89E-51 T 11-10-2018 IPR011055 Duplicated hybrid motif AMD27_16630 d81b08109b10f25538cd33b2f16db63c 288 TIGRFAM TIGR02742 TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC 146 271 8.9E-21 T 11-10-2018 IPR014113 Type-F conjugative transfer system pilin assembly protein TrbC, subgroup AMD27_16630 d81b08109b10f25538cd33b2f16db63c 288 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 147 258 9.9E-20 T 11-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 Gene3D G3DSA:3.40.570.10 68 285 2.4E-52 T 11-10-2018 AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 SMART SM00892 82 271 1.2E-37 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 Pfam PF01223 DNA/RNA non-specific endonuclease 75 268 7.0E-40 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 SMART SM00477 83 271 6.5E-28 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 142 150 - T 11-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 AMD27_14865 f569c1bd74c9f1e4d99ed8b131e07426 360 SUPERFAMILY SSF54060 57 277 3.94E-60 T 11-10-2018 AMD27_02115 09b29e6fe4bb024e6b110198ac57f0c3 199 Gene3D G3DSA:1.10.530.40 40 199 5.6E-52 T 11-10-2018 AMD27_02115 09b29e6fe4bb024e6b110198ac57f0c3 199 Pfam PF00959 Phage lysozyme 82 191 4.7E-20 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMD27_02115 09b29e6fe4bb024e6b110198ac57f0c3 199 SUPERFAMILY SSF53955 54 199 8.19E-49 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_17540 8592f595d88658ced3377dc2a7938296 203 SUPERFAMILY SSF51306 72 187 9.42E-13 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMD27_17540 8592f595d88658ced3377dc2a7938296 203 Pfam PF10502 Signal peptidase, peptidase S26 102 188 2.4E-11 T 11-10-2018 IPR019533 Peptidase S26 AMD27_17540 8592f595d88658ced3377dc2a7938296 203 Gene3D G3DSA:2.10.109.10 68 193 7.9E-11 T 11-10-2018 AMD27_15630 dd24d812b92bf33d78a00c8710931f09 173 Pfam PF04608 Phosphatidylglycerophosphatase A 25 167 1.2E-44 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AMD27_15630 dd24d812b92bf33d78a00c8710931f09 173 SUPERFAMILY SSF101307 20 168 6.54E-40 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 AMD27_15630 dd24d812b92bf33d78a00c8710931f09 173 PIRSF PIRSF006162 13 173 4.4E-47 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMD27_11650 cedb17249336614a871ded7b5bc98fda 109 Gene3D G3DSA:1.10.10.10 7 109 2.6E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_11650 cedb17249336614a871ded7b5bc98fda 109 SUPERFAMILY SSF46767 10 92 3.79E-22 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMD27_11650 cedb17249336614a871ded7b5bc98fda 109 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 11 92 1.7E-21 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMD27_14350 ec66c74582334143ee055ef92666d6e4 220 SUPERFAMILY SSF53335 19 155 1.51E-9 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_14350 ec66c74582334143ee055ef92666d6e4 220 Gene3D G3DSA:3.40.50.150 3 193 6.0E-25 T 11-10-2018 AMD27_14350 ec66c74582334143ee055ef92666d6e4 220 Pfam PF02390 Putative methyltransferase 23 151 2.0E-18 T 11-10-2018 AMD27_05560 966414bde62de5dc948d8983ea26e496 233 Gene3D G3DSA:3.30.110.170 34 226 4.8E-18 T 11-10-2018 AMD27_05560 966414bde62de5dc948d8983ea26e496 233 Gene3D G3DSA:3.30.70.2970 44 146 4.8E-18 T 11-10-2018 AMD27_05560 966414bde62de5dc948d8983ea26e496 233 Pfam PF04402 Protein of unknown function (DUF541) 33 229 6.8E-23 T 11-10-2018 IPR007497 Protein of unknown function DUF541 AMD27_15175 df7deab34a87d7e0606434308ccd4601 142 Pfam PF03400 IS1 transposase 15 139 4.4E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_15210 5849ccb8b4298c75d7f8e20db436ecc8 426 Gene3D G3DSA:3.40.50.11720 32 213 2.7E-42 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMD27_15210 5849ccb8b4298c75d7f8e20db436ecc8 426 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 36 215 5.5E-55 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMD27_15210 5849ccb8b4298c75d7f8e20db436ecc8 426 SUPERFAMILY SSF53756 58 412 1.82E-13 T 11-10-2018 AMD27_15210 5849ccb8b4298c75d7f8e20db436ecc8 426 Pfam PF00534 Glycosyl transferases group 1 251 404 7.2E-9 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMD27_15210 5849ccb8b4298c75d7f8e20db436ecc8 426 Gene3D G3DSA:3.40.50.2000 219 410 4.6E-62 T 11-10-2018 AMD27_00505 49f0908256cc32fb116f501fcc4cbfc6 315 PIRSF PIRSF006232 20 299 3.0E-74 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMD27_00505 49f0908256cc32fb116f501fcc4cbfc6 315 Pfam PF02678 Pirin 41 138 2.8E-28 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMD27_00505 49f0908256cc32fb116f501fcc4cbfc6 315 SUPERFAMILY SSF51182 34 301 2.67E-69 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_00505 49f0908256cc32fb116f501fcc4cbfc6 315 Pfam PF05726 Pirin C-terminal cupin domain 190 287 5.7E-19 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMD27_00505 49f0908256cc32fb116f501fcc4cbfc6 315 Gene3D G3DSA:2.60.120.10 18 263 1.8E-62 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_02585 04692284d13c39b361ea48be1db44f38 480 Pfam PF02233 NAD(P) transhydrogenase beta subunit 10 473 9.5E-182 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMD27_02585 04692284d13c39b361ea48be1db44f38 480 SUPERFAMILY SSF52467 304 476 9.81E-74 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_02585 04692284d13c39b361ea48be1db44f38 480 Gene3D G3DSA:3.40.50.1220 297 476 2.4E-82 T 11-10-2018 AMD27_02585 04692284d13c39b361ea48be1db44f38 480 PIRSF PIRSF000204 4 477 3.8E-190 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PIRSF PIRSF002560 1 154 3.4E-60 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 SUPERFAMILY SSF47240 1 154 1.67E-40 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.0E-51 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 6.6E-59 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 Gene3D G3DSA:1.20.1260.10 1 154 7.9E-56 T 11-10-2018 IPR012347 Ferritin-like AMD27_01560 6d007714e94970d4f5b805c4bbb71072 154 Pfam PF00210 Ferritin-like domain 8 142 9.3E-29 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 7.1E-23 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 SUPERFAMILY SSF51735 102 259 1.35E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 SUPERFAMILY SSF53223 2 101 5.58E-30 T 11-10-2018 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 260 28.881 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 Gene3D G3DSA:3.40.50.720 115 234 2.5E-75 T 11-10-2018 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 259 2.7E-74 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 Gene3D G3DSA:3.40.50.10860 5 253 2.5E-75 T 11-10-2018 AMD27_14230 c35e00895498e333e494713ce0fc22cf 262 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 113 194 3.7E-12 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMD27_07895 80b64156b2ec1b8600fc2469db5e5306 268 SUPERFAMILY SSF54637 163 261 3.23E-6 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_07895 80b64156b2ec1b8600fc2469db5e5306 268 Gene3D G3DSA:3.10.129.90 42 263 1.7E-10 T 11-10-2018 AMD27_07895 80b64156b2ec1b8600fc2469db5e5306 268 Pfam PF13622 Thioesterase-like superfamily 30 260 2.1E-25 T 11-10-2018 AMD27_09520 92c55e09570c7daf0a4589016f8f656e 219 SUPERFAMILY SSF161098 8 203 1.7E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_09520 92c55e09570c7daf0a4589016f8f656e 219 Gene3D G3DSA:1.10.3720.10 2 216 5.5E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_09520 92c55e09570c7daf0a4589016f8f656e 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 217 3.6E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_00700 0e7357b4d2c3733140e4e037e5655df8 297 SUPERFAMILY SSF103481 196 295 4.45E-16 T 11-10-2018 AMD27_00700 0e7357b4d2c3733140e4e037e5655df8 297 SUPERFAMILY SSF103481 44 147 1.09E-13 T 11-10-2018 AMD27_00700 0e7357b4d2c3733140e4e037e5655df8 297 Pfam PF00892 EamA-like transporter family 10 144 8.3E-25 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_00700 0e7357b4d2c3733140e4e037e5655df8 297 Pfam PF00892 EamA-like transporter family 158 289 2.1E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_08525 4392dd1ae9a272df403a0bfbf005c543 244 Pfam PF04404 ERF superfamily 16 164 2.1E-25 T 11-10-2018 IPR007499 Essential recombination function protein AMD27_03880 c64e2aff263ec27fe239045fa117133d 596 Pfam PF06276 Ferric iron reductase FhuF-like transporter 409 568 3.2E-33 T 11-10-2018 IPR022770 Ferric iron reductase FhuF domain AMD27_03880 c64e2aff263ec27fe239045fa117133d 596 Pfam PF04183 IucA / IucC family 146 378 1.0E-54 T 11-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 AMD27_03880 c64e2aff263ec27fe239045fa117133d 596 Gene3D G3DSA:1.10.510.40 394 576 3.5E-13 T 11-10-2018 AMD27_17775 d730a1fdc314c26d51fc7b4a777bff31 988 Pfam PF07916 TraG-like protein, N-terminal region 7 505 1.1E-44 T 11-10-2018 IPR012931 TraG-like, N-terminal AMD27_14270 397671f422eca9c53999209ff20a7364 370 Pfam PF00158 Sigma-54 interaction domain 29 191 3.6E-63 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMD27_14270 397671f422eca9c53999209ff20a7364 370 SMART SM00382 46 189 6.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_14270 397671f422eca9c53999209ff20a7364 370 Gene3D G3DSA:3.40.50.300 13 195 1.3E-59 T 11-10-2018 AMD27_14270 397671f422eca9c53999209ff20a7364 370 SUPERFAMILY SSF46689 239 357 3.09E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_14270 397671f422eca9c53999209ff20a7364 370 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 111 126 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMD27_14270 397671f422eca9c53999209ff20a7364 370 Gene3D G3DSA:1.10.10.60 295 357 8.7E-8 T 11-10-2018 AMD27_14270 397671f422eca9c53999209ff20a7364 370 Gene3D G3DSA:1.10.8.60 196 274 8.6E-22 T 11-10-2018 AMD27_14270 397671f422eca9c53999209ff20a7364 370 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 239 248 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMD27_14270 397671f422eca9c53999209ff20a7364 370 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 50 63 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMD27_14270 397671f422eca9c53999209ff20a7364 370 SUPERFAMILY SSF52540 27 268 7.34E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_02605 288395ef0f30efee794ac1b7eb77abbc 262 Gene3D G3DSA:3.90.226.10 2 249 2.7E-66 T 11-10-2018 AMD27_02605 288395ef0f30efee794ac1b7eb77abbc 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 220 3.9E-45 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_02605 288395ef0f30efee794ac1b7eb77abbc 262 SUPERFAMILY SSF52096 3 243 3.37E-64 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_02605 288395ef0f30efee794ac1b7eb77abbc 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMD27_04025 42fd7177a6d9e0e7d96b1515f54b46b9 76 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 9 69 1.4E-21 T 11-10-2018 IPR018684 Protein of unknown function DUF2171 AMD27_03020 75b7bdac077b25b92ad06ed468b21d54 149 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 147 3.9E-25 T 11-10-2018 IPR019223 Domain of unknown function DUF2147 AMD27_03020 75b7bdac077b25b92ad06ed468b21d54 149 Gene3D G3DSA:2.40.128.520 21 149 3.1E-16 T 11-10-2018 AMD27_09795 a51a1ed49f9580809f4ce5459b64c61f 145 Gene3D G3DSA:3.30.10.10 78 144 4.8E-17 T 11-10-2018 AMD27_09795 a51a1ed49f9580809f4ce5459b64c61f 145 Pfam PF03891 Domain of unknown function (DUF333) 34 77 5.6E-22 T 11-10-2018 IPR005590 Protein of unknown function DUF333 AMD27_09795 a51a1ed49f9580809f4ce5459b64c61f 145 Pfam PF11720 Peptidase inhibitor I78 family 82 145 5.5E-9 T 11-10-2018 IPR021719 Proteinase inhibitor I78 AMD27_03420 6dc0a94cc1658e70babbc88da0d5f4ba 278 Gene3D G3DSA:3.40.50.1820 1 278 2.9E-83 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03420 6dc0a94cc1658e70babbc88da0d5f4ba 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 3 276 4.7E-118 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AMD27_03420 6dc0a94cc1658e70babbc88da0d5f4ba 278 SUPERFAMILY SSF53474 1 273 1.02E-76 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_03420 6dc0a94cc1658e70babbc88da0d5f4ba 278 Pfam PF00756 Putative esterase 21 270 3.2E-50 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMD27_14375 5ecb0114f5d283a786d33eb581940798 338 Pfam PF13271 Domain of unknown function (DUF4062) 7 85 7.9E-12 T 11-10-2018 IPR025139 Domain of unknown function DUF4062 AMD27_04940 d88991c216308b744e5236d0105cbf66 359 Gene3D G3DSA:1.10.3720.10 114 348 4.8E-19 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_04940 d88991c216308b744e5236d0105cbf66 359 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 144 352 4.6E-35 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_04940 d88991c216308b744e5236d0105cbf66 359 SUPERFAMILY SSF161098 120 338 4.06E-15 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_10550 73525c63ef9214e4147a29a753e95ece 243 Pfam PF04356 Protein of unknown function (DUF489) 17 230 4.0E-50 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD AMD27_10550 73525c63ef9214e4147a29a753e95ece 243 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 20 229 3.0E-98 T 11-10-2018 AMD27_10550 73525c63ef9214e4147a29a753e95ece 243 Gene3D G3DSA:1.10.3890.10 12 241 7.8E-58 T 11-10-2018 IPR035932 HflD-like superfamily AMD27_10550 73525c63ef9214e4147a29a753e95ece 243 SUPERFAMILY SSF101322 13 236 5.75E-47 T 11-10-2018 IPR035932 HflD-like superfamily AMD27_17455 b80c26d092a5447fe1acd30c15d74849 77 Pfam PF08972 Domain of unknown function (DUF1902) 14 73 1.9E-13 T 11-10-2018 IPR015066 Domain of unknown function DUF1902 AMD27_17455 b80c26d092a5447fe1acd30c15d74849 77 Gene3D G3DSA:3.30.2390.10 9 75 1.9E-11 T 11-10-2018 AMD27_17455 b80c26d092a5447fe1acd30c15d74849 77 SUPERFAMILY SSF143100 10 61 3.79E-7 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like AMD27_04270 17df3a32db07665514e172e882f257bb 145 SUPERFAMILY SSF117782 50 143 2.35E-24 T 11-10-2018 IPR035439 UPF0145 domain superfamily AMD27_04270 17df3a32db07665514e172e882f257bb 145 Gene3D G3DSA:3.30.110.70 45 145 5.9E-25 T 11-10-2018 AMD27_04270 17df3a32db07665514e172e882f257bb 145 Pfam PF01906 Putative heavy-metal-binding 51 143 3.8E-24 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMD27_08815 600d2d280fe81b8b87c3557d377367ec 243 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 42 93 1.2E-6 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMD27_08815 600d2d280fe81b8b87c3557d377367ec 243 Gene3D G3DSA:3.40.50.1240 26 211 6.6E-11 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_08815 600d2d280fe81b8b87c3557d377367ec 243 SUPERFAMILY SSF53254 27 196 8.51E-15 T 11-10-2018 IPR029033 Histidine phosphatase superfamily AMD27_01700 48090e2d1b6a58565c85bb884f437e36 328 Pfam PF00561 alpha/beta hydrolase fold 50 173 7.3E-12 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMD27_01700 48090e2d1b6a58565c85bb884f437e36 328 Gene3D G3DSA:3.40.50.1820 42 328 2.1E-72 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01700 48090e2d1b6a58565c85bb884f437e36 328 SUPERFAMILY SSF53474 44 300 8.67E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_09810 d13f07895daffbc76a4cfd964d4bb7e4 439 SUPERFAMILY SSF103473 7 427 9.94E-37 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_09810 d13f07895daffbc76a4cfd964d4bb7e4 439 Pfam PF07690 Major Facilitator Superfamily 17 312 2.8E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_09810 d13f07895daffbc76a4cfd964d4bb7e4 439 Gene3D G3DSA:1.20.1250.20 9 427 3.2E-33 T 11-10-2018 AMD27_01075 f37c9c8b929940de0cfbbd8ba41d493a 206 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 12 197 2.6E-38 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AMD27_01075 f37c9c8b929940de0cfbbd8ba41d493a 206 Pfam PF00293 NUDIX domain 55 177 4.2E-12 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_01075 f37c9c8b929940de0cfbbd8ba41d493a 206 ProSitePatterns PS00893 Nudix box signature. 96 117 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMD27_01075 f37c9c8b929940de0cfbbd8ba41d493a 206 Gene3D G3DSA:3.90.79.10 4 203 7.4E-51 T 11-10-2018 AMD27_01075 f37c9c8b929940de0cfbbd8ba41d493a 206 SUPERFAMILY SSF55811 16 199 2.44E-39 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_11855 71516824609d33d1282d9ef7a3022b9d 488 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 261 7.9E-66 T 11-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMD27_11855 71516824609d33d1282d9ef7a3022b9d 488 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 446 1.4E-152 T 11-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMD27_11855 71516824609d33d1282d9ef7a3022b9d 488 Pfam PF06974 Protein of unknown function (DUF1298) 300 443 3.4E-38 T 11-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 109 124 8.8E-19 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 8.8E-19 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 61 69 8.8E-19 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 TIGRFAM TIGR00077 lspA: signal peptidase II 17 170 7.1E-41 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 15 170 17.49 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 Pfam PF01252 Signal peptidase (SPase) II 24 165 1.5E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_15895 7f060e58c553436ba4bbf5fbe12602cf 179 ProSitePatterns PS00855 Signal peptidases II signature. 112 124 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMD27_02050 627c0d191196d5ecab9d364ceef5a5a9 445 Gene3D G3DSA:1.20.58.2200 381 444 3.7E-8 T 11-10-2018 IPR038440 FimV, C-terminal domain superfamily AMD27_01595 dac2d8b7a3b71a429847b7542e9d34d1 139 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 2.7E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01595 dac2d8b7a3b71a429847b7542e9d34d1 139 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.4E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01595 dac2d8b7a3b71a429847b7542e9d34d1 139 Gene3D G3DSA:3.30.700.10 8 139 3.6E-13 T 11-10-2018 AMD27_01595 dac2d8b7a3b71a429847b7542e9d34d1 139 SUPERFAMILY SSF54523 8 89 1.26E-13 T 11-10-2018 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 SUPERFAMILY SSF51621 8 290 1.61E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 5 292 46.719 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 254 1.0E-47 T 11-10-2018 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 8 291 2.1E-122 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AMD27_08935 ab2cc93f4aec38961220a1b566c15f2a 294 Gene3D G3DSA:3.20.20.60 5 294 2.5E-97 T 11-10-2018 AMD27_05420 881fad799f7fb3be602178d4af507980 486 Pfam PF01928 CYTH domain 1 177 1.5E-18 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMD27_05420 881fad799f7fb3be602178d4af507980 486 Gene3D G3DSA:2.40.320.10 1 195 1.8E-31 T 11-10-2018 AMD27_05420 881fad799f7fb3be602178d4af507980 486 SMART SM01118 1 202 3.3E-24 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMD27_05420 881fad799f7fb3be602178d4af507980 486 SUPERFAMILY SSF55154 1 216 1.8E-33 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMD27_07810 37425c9d5bbaf5ef6f639b7640d3d007 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 221 2.9E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_07810 37425c9d5bbaf5ef6f639b7640d3d007 227 SUPERFAMILY SSF161098 4 213 1.31E-48 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_07810 37425c9d5bbaf5ef6f639b7640d3d007 227 Gene3D G3DSA:1.10.3720.10 1 222 2.7E-55 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_07810 37425c9d5bbaf5ef6f639b7640d3d007 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 217 1.0E-70 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AMD27_03910 deaac7255781737d273f0759011eff6d 206 SUPERFAMILY SSF89562 19 176 6.54E-29 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMD27_03910 deaac7255781737d273f0759011eff6d 206 Gene3D G3DSA:3.50.30.40 22 181 3.0E-31 T 11-10-2018 AMD27_03910 deaac7255781737d273f0759011eff6d 206 Pfam PF03737 Aldolase/RraA 32 164 1.2E-22 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMD27_00585 ae8647f46e989576bf64f4ce4c8d578a 303 SUPERFAMILY SSF54909 3 301 1.04E-87 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_00585 ae8647f46e989576bf64f4ce4c8d578a 303 Pfam PF04261 Dyp-type peroxidase family 32 297 6.3E-71 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AMD27_00585 ae8647f46e989576bf64f4ce4c8d578a 303 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 296 1.6E-66 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AMD27_14165 2343e44d33cd8bace8b5229b14af70e6 199 Gene3D G3DSA:3.40.50.450 1 193 4.1E-72 T 11-10-2018 AMD27_14165 2343e44d33cd8bace8b5229b14af70e6 199 Pfam PF03641 Possible lysine decarboxylase 46 172 5.4E-40 T 11-10-2018 IPR031100 LOG family AMD27_14165 2343e44d33cd8bace8b5229b14af70e6 199 SUPERFAMILY SSF102405 1 179 7.33E-60 T 11-10-2018 AMD27_14165 2343e44d33cd8bace8b5229b14af70e6 199 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 178 1.1E-56 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 Gene3D G3DSA:3.40.190.10 93 292 8.4E-78 T 11-10-2018 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.6E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.6E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.6E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.0E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 Gene3D G3DSA:3.40.190.10 162 267 8.4E-78 T 11-10-2018 AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 Gene3D G3DSA:1.10.10.10 1 91 4.0E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 Pfam PF03466 LysR substrate binding domain 89 288 3.9E-36 T 11-10-2018 IPR005119 LysR, substrate-binding AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 SUPERFAMILY SSF46785 1 81 5.05E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_07880 48d8b096ac77171871f185e4e9e294fc 304 SUPERFAMILY SSF53850 89 292 4.73E-32 T 11-10-2018 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 Gene3D G3DSA:1.20.1560.10 25 342 1.9E-25 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 SUPERFAMILY SSF52540 350 600 8.94E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 SMART SM00382 385 576 2.2E-21 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 Gene3D G3DSA:3.40.50.300 352 605 3.3E-90 T 11-10-2018 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 Pfam PF00005 ABC transporter 377 530 3.9E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 SUPERFAMILY SSF90123 20 346 1.15E-46 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMD27_08035 b1f5f973e4cff295e3bdbfec34f57ff9 620 Pfam PF00664 ABC transporter transmembrane region 41 308 2.5E-16 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMD27_14570 21826c293c9843ebdc2bf6a9699355c3 602 Pfam PF00361 Proton-conducting membrane transporter 143 432 7.9E-40 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14570 21826c293c9843ebdc2bf6a9699355c3 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 2.7E-6 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14570 21826c293c9843ebdc2bf6a9699355c3 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 394 420 2.7E-6 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14570 21826c293c9843ebdc2bf6a9699355c3 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 148 167 2.7E-6 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_14570 21826c293c9843ebdc2bf6a9699355c3 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 2.7E-6 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 SUPERFAMILY SSF51735 2 156 9.04E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 SUPERFAMILY SSF48179 159 253 3.16E-23 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 Pfam PF10728 Domain of unknown function (DUF2520) 126 250 7.8E-29 T 11-10-2018 IPR018931 Domain of unknown function DUF2520 AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 Gene3D G3DSA:3.40.50.720 1 155 1.8E-41 T 11-10-2018 AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 89 1.5E-8 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMD27_10180 ea32654da8168c09de8ade7969d4f9a1 256 Gene3D G3DSA:1.10.1040.20 156 255 1.8E-33 T 11-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily AMD27_14245 5adee5678f2a23e21e222e5d6f36c670 199 Gene3D G3DSA:3.30.530.20 45 197 8.5E-13 T 11-10-2018 IPR023393 START-like domain superfamily AMD27_14245 5adee5678f2a23e21e222e5d6f36c670 199 SUPERFAMILY SSF55961 46 196 2.75E-15 T 11-10-2018 AMD27_14245 5adee5678f2a23e21e222e5d6f36c670 199 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 46 178 1.4E-7 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase AMD27_00905 f4da9017c879108f38e35361b5532387 75 Pfam PF04380 Membrane fusogenic activity 4 68 2.8E-14 T 11-10-2018 IPR007475 Membrane fusogenic activity AMD27_01725 030efcd76a19075102c1fe452ebad273 290 Pfam PF00892 EamA-like transporter family 7 113 1.2E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_01725 030efcd76a19075102c1fe452ebad273 290 Pfam PF00892 EamA-like transporter family 146 279 6.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_01725 030efcd76a19075102c1fe452ebad273 290 SUPERFAMILY SSF103481 183 282 6.8E-11 T 11-10-2018 AMD27_14955 fd17034426e6167d2f138c25d0053de0 222 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 16 214 9.1E-43 T 11-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AMD27_14955 fd17034426e6167d2f138c25d0053de0 222 Gene3D G3DSA:1.20.910.10 1 220 1.1E-60 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMD27_14955 fd17034426e6167d2f138c25d0053de0 222 SUPERFAMILY SSF48613 1 213 6.97E-61 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMD27_14955 fd17034426e6167d2f138c25d0053de0 222 Pfam PF03070 TENA/THI-4/PQQC family 12 214 7.4E-37 T 11-10-2018 IPR004305 Thiaminase-2/PQQC AMD27_04410 4a997b629c07c257fadf992489f18762 208 Pfam PF08242 Methyltransferase domain 54 155 8.2E-12 T 11-10-2018 IPR013217 Methyltransferase type 12 AMD27_04410 4a997b629c07c257fadf992489f18762 208 Gene3D G3DSA:3.40.50.150 16 207 9.2E-26 T 11-10-2018 AMD27_04410 4a997b629c07c257fadf992489f18762 208 SUPERFAMILY SSF53335 25 195 4.03E-21 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_05705 f08ac70be4d0b10954a650bd0f0ba21b 263 Gene3D G3DSA:1.10.12.10 204 263 5.5E-16 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_05705 f08ac70be4d0b10954a650bd0f0ba21b 263 SUPERFAMILY SSF52096 4 261 8.54E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_05705 f08ac70be4d0b10954a650bd0f0ba21b 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 262 2.2E-52 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_05705 f08ac70be4d0b10954a650bd0f0ba21b 263 Gene3D G3DSA:3.90.226.10 2 203 6.8E-63 T 11-10-2018 AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 134 195 6.0E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 SUPERFAMILY SSF47616 85 201 3.27E-36 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 SUPERFAMILY SSF52833 1 83 2.24E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 Gene3D G3DSA:3.40.30.10 2 203 4.1E-82 T 11-10-2018 AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 80 4.4E-11 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMD27_02720 8a37950c853bba931e2f10b6e7eaf052 205 Gene3D G3DSA:1.20.1050.10 87 194 4.1E-82 T 11-10-2018 AMD27_13620 d92853ba1f0aeeb89175241edb0bb914 167 Pfam PF13803 Domain of unknown function (DUF4184) 1 150 1.6E-6 T 11-10-2018 IPR025238 Protein of unknown function DUF4184 AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 SUPERFAMILY SSF52821 122 250 4.66E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 SMART SM00450 126 227 3.0E-21 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 Gene3D G3DSA:3.30.70.100 9 110 8.2E-27 T 11-10-2018 AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 Gene3D G3DSA:3.40.250.10 114 260 6.5E-50 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 Hamap MF_00469 UPF0176 protein YceA [yceA]. 17 267 42.399 T 11-10-2018 IPR020936 Uncharacterised protein family UPF0176 AMD27_04450 7c3145701742b26ad7c50e64351cd044 310 Pfam PF00581 Rhodanese-like domain 128 223 1.2E-11 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_08180 388305df2da53ce8222e1ffe111b9523 200 SUPERFAMILY SSF55469 3 199 2.09E-64 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_08180 388305df2da53ce8222e1ffe111b9523 200 Pfam PF00881 Nitroreductase family 9 178 6.3E-12 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMD27_08180 388305df2da53ce8222e1ffe111b9523 200 Gene3D G3DSA:3.40.109.10 2 200 1.1E-78 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_05185 e56bda0d23314097bf45698a9de7c379 137 Gene3D G3DSA:1.10.1660.10 1 132 2.4E-31 T 11-10-2018 AMD27_05185 e56bda0d23314097bf45698a9de7c379 137 SUPERFAMILY SSF46955 9 129 6.59E-32 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_05185 e56bda0d23314097bf45698a9de7c379 137 Pfam PF00376 MerR family regulatory protein 10 45 3.9E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_05185 e56bda0d23314097bf45698a9de7c379 137 SMART SM00422 7 76 4.6E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_05185 e56bda0d23314097bf45698a9de7c379 137 Pfam PF09278 MerR, DNA binding 50 114 1.6E-17 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMD27_06485 6442ec1113d87d36063782db3ce92bac 336 Gene3D G3DSA:1.10.10.60 234 336 7.2E-19 T 11-10-2018 AMD27_06485 6442ec1113d87d36063782db3ce92bac 336 SUPERFAMILY SSF46689 291 334 8.51E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_06485 6442ec1113d87d36063782db3ce92bac 336 SMART SM00342 253 335 6.3E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_06485 6442ec1113d87d36063782db3ce92bac 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 20 204 2.3E-22 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMD27_06485 6442ec1113d87d36063782db3ce92bac 336 Pfam PF12833 Helix-turn-helix domain 262 334 9.9E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMD27_17510 56f4f60441672da7bf8d5041dbe56c2c 453 Pfam PF03743 Bacterial conjugation TrbI-like protein 250 448 7.5E-29 T 11-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI AMD27_04740 d965925c85bcd0aacb1b5c42c97edc56 258 Gene3D G3DSA:2.40.128.270 28 151 2.5E-14 T 11-10-2018 IPR038670 HslJ-like superfamily AMD27_04740 d965925c85bcd0aacb1b5c42c97edc56 258 Pfam PF03724 META domain 48 146 1.3E-15 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AMD27_04740 d965925c85bcd0aacb1b5c42c97edc56 258 Pfam PF14302 Domain of unknown function (DUF4377) 167 251 1.5E-24 T 11-10-2018 IPR025485 Domain of unknown function DUF4377 AMD27_17100 3f2109ac4f32bb2a3c320bd81b606e9d 389 SUPERFAMILY SSF64182 73 364 5.49E-19 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily AMD27_08380 de10b3033b48870f77d1c15f84a4589f 154 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 100 5.0E-41 T 11-10-2018 IPR018738 Protein of unknown function DUF2280 AMD27_17810 9b95bd9109b1d3ab27d808bfeabd827f 344 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 126 217 4.8E-21 T 11-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN AMD27_05745 c6ff03b06a92aac6d31fc602911b56a9 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 264 1.3E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_05745 c6ff03b06a92aac6d31fc602911b56a9 266 Gene3D G3DSA:3.90.226.10 10 191 1.4E-54 T 11-10-2018 AMD27_05745 c6ff03b06a92aac6d31fc602911b56a9 266 Gene3D G3DSA:1.10.12.10 210 255 1.1E-23 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_05745 c6ff03b06a92aac6d31fc602911b56a9 266 SUPERFAMILY SSF52096 9 264 1.38E-62 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_10490 26db96f55e336c0373dba847b6b55f44 259 Gene3D G3DSA:3.40.1210.10 1 258 4.5E-82 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMD27_10490 26db96f55e336c0373dba847b6b55f44 259 SUPERFAMILY SSF64167 1 254 9.42E-76 T 11-10-2018 AMD27_10490 26db96f55e336c0373dba847b6b55f44 259 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 259 36.099 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMD27_10490 26db96f55e336c0373dba847b6b55f44 259 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 242 8.7E-67 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMD27_10490 26db96f55e336c0373dba847b6b55f44 259 Pfam PF01975 Survival protein SurE 3 186 3.2E-56 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMD27_12510 3bd8d746833c85ffdb47fa9b8408f73d 205 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 200 7.8E-56 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMD27_12510 3bd8d746833c85ffdb47fa9b8408f73d 205 Gene3D G3DSA:3.90.870.10 2 205 1.2E-56 T 11-10-2018 AMD27_12510 3bd8d746833c85ffdb47fa9b8408f73d 205 SUPERFAMILY SSF55821 4 203 1.89E-56 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMD27_12510 3bd8d746833c85ffdb47fa9b8408f73d 205 Pfam PF01300 Telomere recombination 22 197 9.0E-40 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 AMD27_01395 efa9a0ee41c4d11942c0e4be45a9e000 702 Pfam PF04632 Fusaric acid resistance protein family 16 684 6.7E-143 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 AMD27_00815 b39541db99c09ba06f9cbda43ab2374b 118 Pfam PF01042 Endoribonuclease L-PSP 4 115 1.3E-24 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_00815 b39541db99c09ba06f9cbda43ab2374b 118 SUPERFAMILY SSF55298 11 117 1.88E-26 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_00815 b39541db99c09ba06f9cbda43ab2374b 118 Gene3D G3DSA:3.30.1330.40 1 118 4.2E-33 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_14785 8fc1579b65cc071b20b25b3f84001252 125 SUPERFAMILY SSF55729 18 108 2.4E-10 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_14785 8fc1579b65cc071b20b25b3f84001252 125 Pfam PF12568 Acetyltransferase (GNAT) domain 3 98 6.6E-11 T 11-10-2018 IPR000182 GNAT domain AMD27_14785 8fc1579b65cc071b20b25b3f84001252 125 Gene3D G3DSA:3.40.630.30 1 111 1.0E-16 T 11-10-2018 AMD27_08985 5e3157b2ccc2720848594487df99361b 269 SUPERFAMILY SSF53474 14 267 6.68E-24 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_08985 5e3157b2ccc2720848594487df99361b 269 Pfam PF12146 Serine aminopeptidase, S33 28 143 2.6E-10 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_08985 5e3157b2ccc2720848594487df99361b 269 Gene3D G3DSA:3.40.50.1820 15 269 5.2E-20 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12450 48bd05804ea0d1b697403ff2bc7a12bd 146 Pfam PF01042 Endoribonuclease L-PSP 12 140 6.2E-19 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_12450 48bd05804ea0d1b697403ff2bc7a12bd 146 SUPERFAMILY SSF55298 24 140 2.67E-22 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_12450 48bd05804ea0d1b697403ff2bc7a12bd 146 Gene3D G3DSA:3.30.1330.40 3 143 7.1E-26 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_07025 cc8b8999560c50330f5c18b5a31ae458 400 Pfam PF06114 IrrE N-terminal-like domain 163 282 3.5E-18 T 11-10-2018 IPR010359 IrrE N-terminal-like domain AMD27_07025 cc8b8999560c50330f5c18b5a31ae458 400 SUPERFAMILY SSF47413 9 73 5.63E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_07025 cc8b8999560c50330f5c18b5a31ae458 400 Gene3D G3DSA:1.10.260.40 9 70 4.1E-10 T 11-10-2018 AMD27_07025 cc8b8999560c50330f5c18b5a31ae458 400 Pfam PF01381 Helix-turn-helix 21 67 2.6E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_07025 cc8b8999560c50330f5c18b5a31ae458 400 SMART SM00530 11 67 1.4E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMD27_13445 ac4eafe7a41fc65808a5f033438e5782 247 Pfam PF09976 Tetratricopeptide repeat-like domain 14 213 1.1E-42 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AMD27_13445 ac4eafe7a41fc65808a5f033438e5782 247 Gene3D G3DSA:1.25.40.10 39 222 1.9E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_13445 ac4eafe7a41fc65808a5f033438e5782 247 PIRSF PIRSF006170 1 218 1.6E-60 T 11-10-2018 IPR026039 Uncharacterised protein family UPF0070 AMD27_13445 ac4eafe7a41fc65808a5f033438e5782 247 SUPERFAMILY SSF48452 90 193 3.07E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_15480 c1c02c89f14153810a080d4ca30d4f1b 435 Pfam PF04286 Protein of unknown function (DUF445) 54 429 3.5E-70 T 11-10-2018 IPR007383 Protein of unknown function DUF445 AMD27_02875 d7d4dcd350b2fd2033b67f7fa4bf6638 168 SUPERFAMILY SSF52091 8 105 4.12E-12 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_02875 d7d4dcd350b2fd2033b67f7fa4bf6638 168 Gene3D G3DSA:3.30.750.24 4 108 5.0E-11 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_02875 d7d4dcd350b2fd2033b67f7fa4bf6638 168 PIRSF PIRSF029548 1 160 5.9E-34 T 11-10-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type AMD27_12460 05d03a4f9658c8c01d4c361f209fc095 114 Pfam PF12686 Protein of unknown function (DUF3800) 3 79 2.9E-10 T 11-10-2018 IPR024524 Protein of unknown function DUF3800 AMD27_12575 3f08d799a67ccfda91fa0907ce8228a6 354 Gene3D G3DSA:3.40.50.720 3 354 2.8E-91 T 11-10-2018 AMD27_12575 3f08d799a67ccfda91fa0907ce8228a6 354 SUPERFAMILY SSF51735 10 343 8.2E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_12575 3f08d799a67ccfda91fa0907ce8228a6 354 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 254 4.2E-27 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMD27_05075 745bf431ac7ccb4fab57db48221eb686 321 PIRSF PIRSF026649 7 292 1.1E-62 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_05075 745bf431ac7ccb4fab57db48221eb686 321 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 20 284 2.9E-35 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_08840 1bd5221199eebd29ba289015cce43cf7 207 Gene3D G3DSA:1.10.10.10 114 157 1.7E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08840 1bd5221199eebd29ba289015cce43cf7 207 Pfam PF02631 RecX family 96 204 6.2E-24 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMD27_08840 1bd5221199eebd29ba289015cce43cf7 207 Gene3D G3DSA:1.10.10.10 158 207 1.1E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_08840 1bd5221199eebd29ba289015cce43cf7 207 Hamap MF_01114 Regulatory protein RecX [recX]. 38 207 11.854 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMD27_03145 4970bcf633d4dd293fa3ecd9a482fc8b 331 Pfam PF10974 Protein of unknown function (DUF2804) 7 330 9.7E-66 T 11-10-2018 IPR021243 Protein of unknown function DUF2804 AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 55 271 4.1E-50 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 SMART SM00062 54 276 1.4E-62 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 Gene3D G3DSA:3.40.190.10 49 269 3.0E-74 T 11-10-2018 AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 77 90 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 SUPERFAMILY SSF53850 8 271 2.42E-57 T 11-10-2018 AMD27_10900 dd67f963a35cf069d1efa6d62b3b3aea 289 Gene3D G3DSA:3.40.190.10 144 234 3.0E-74 T 11-10-2018 AMD27_06150 cafd2813824f0250ce9777e37128164c 205 Gene3D G3DSA:2.160.10.10 41 204 1.5E-42 T 11-10-2018 AMD27_06150 cafd2813824f0250ce9777e37128164c 205 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 151 185 6.5E-7 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_06150 cafd2813824f0250ce9777e37128164c 205 SUPERFAMILY SSF51161 49 204 2.47E-37 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_06150 cafd2813824f0250ce9777e37128164c 205 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 159 187 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMD27_12255 593d0d70f8b4ee4dd36b40ce739506bb 242 Gene3D G3DSA:3.30.1380.10 102 229 3.1E-7 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_12255 593d0d70f8b4ee4dd36b40ce739506bb 242 Pfam PF08291 Peptidase M15 142 180 5.5E-7 T 11-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 AMD27_12255 593d0d70f8b4ee4dd36b40ce739506bb 242 SUPERFAMILY SSF55166 108 230 1.06E-14 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMD27_17515 dbdf41ac1636c4edffa4e907af047bdc 222 TIGRFAM TIGR02747 TraV: type IV conjugative transfer system protein TraV 3 143 3.4E-15 T 11-10-2018 IPR014118 Type IV conjugative transfer system protein TraV AMD27_17515 dbdf41ac1636c4edffa4e907af047bdc 222 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 25 143 3.4E-17 T 11-10-2018 IPR014118 Type IV conjugative transfer system protein TraV AMD27_12750 f1d101922f74a096056e8b8806e9bfce 308 Pfam PF03547 Membrane transport protein 2 150 4.0E-14 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMD27_12750 f1d101922f74a096056e8b8806e9bfce 308 Pfam PF03547 Membrane transport protein 154 303 7.6E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMD27_09145 568413bedc647189ec61de8536a36441 285 SUPERFAMILY SSF51569 8 281 4.4E-101 T 11-10-2018 AMD27_09145 568413bedc647189ec61de8536a36441 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 17 279 48.013 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_09145 568413bedc647189ec61de8536a36441 285 Pfam PF00793 DAHP synthetase I family 14 276 3.7E-71 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_09145 568413bedc647189ec61de8536a36441 285 Gene3D G3DSA:3.20.20.70 4 285 1.5E-96 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_09145 568413bedc647189ec61de8536a36441 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 22 277 1.1E-113 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMD27_15155 3f87d4cedde3f035646a57dc25159ce9 502 SUPERFAMILY SSF51905 7 481 2.68E-7 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_15155 3f87d4cedde3f035646a57dc25159ce9 502 Pfam PF13454 FAD-NAD(P)-binding 10 169 3.8E-28 T 11-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMD27_15155 3f87d4cedde3f035646a57dc25159ce9 502 SUPERFAMILY SSF51905 7 239 1.5E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_14175 dd9b58a0e2c38235b2f5fbdd39857eb8 95 SUPERFAMILY SSF52091 7 94 1.53E-7 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_14175 dd9b58a0e2c38235b2f5fbdd39857eb8 95 Pfam PF13466 STAS domain 11 83 3.4E-8 T 11-10-2018 IPR002645 STAS domain AMD27_14175 dd9b58a0e2c38235b2f5fbdd39857eb8 95 Gene3D G3DSA:3.30.750.24 7 95 2.2E-7 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_16120 e32a0c885c067f97f45470ea4f2fb8f9 191 Pfam PF06042 Nucleotidyltransferase 34 188 4.2E-48 T 11-10-2018 IPR009267 Putative nucleotidyltransferase AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 4.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 Gene3D G3DSA:3.40.50.720 1 260 7.0E-68 T 11-10-2018 AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.5E-35 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 SUPERFAMILY SSF51735 9 258 6.91E-68 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 Pfam PF00106 short chain dehydrogenase 10 192 1.1E-51 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_07845 06bd75e0ab2d89ede71d0fd524d27626 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_03900 6977d2eafc91aad4f0bf6dabdcdb90b3 641 Pfam PF06276 Ferric iron reductase FhuF-like transporter 467 608 3.8E-17 T 11-10-2018 IPR022770 Ferric iron reductase FhuF domain AMD27_03900 6977d2eafc91aad4f0bf6dabdcdb90b3 641 Gene3D G3DSA:1.10.510.40 464 631 1.4E-10 T 11-10-2018 AMD27_03900 6977d2eafc91aad4f0bf6dabdcdb90b3 641 Pfam PF04183 IucA / IucC family 172 423 1.8E-52 T 11-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 AMD27_06655 922f3b0882f6e5169e99f70410423568 278 Pfam PF03618 Kinase/pyrophosphorylase 11 268 1.1E-75 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMD27_06655 922f3b0882f6e5169e99f70410423568 278 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 8 277 74.512 T 11-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein AMD27_03500 a80a61a53a2e618fc37bb28ef99c5cdc 405 Pfam PF01757 Acyltransferase family 4 384 9.4E-25 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 196 8.4E-13 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 Gene3D G3DSA:3.40.30.10 1 145 6.7E-46 T 11-10-2018 AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 Pfam PF00578 AhpC/TSA family 6 135 8.8E-28 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 SUPERFAMILY SSF52833 3 209 7.47E-64 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 Gene3D G3DSA:3.30.1020.10 146 210 1.4E-26 T 11-10-2018 AMD27_03195 4dd2901ab807a32009682f199f02bccc 211 PIRSF PIRSF000239 1 209 1.7E-75 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMD27_08040 7309b336202997da2be19644ee7eea2d 145 Pfam PF01575 MaoC like domain 9 120 5.3E-13 T 11-10-2018 IPR002539 MaoC-like dehydratase domain AMD27_08040 7309b336202997da2be19644ee7eea2d 145 SUPERFAMILY SSF54637 2 144 2.01E-32 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_08040 7309b336202997da2be19644ee7eea2d 145 Gene3D G3DSA:3.10.129.10 1 145 1.3E-40 T 11-10-2018 AMD27_15385 f0efcd1a20ff775a674c7a6749f83d83 129 SUPERFAMILY SSF69754 1 95 7.06E-11 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMD27_15385 f0efcd1a20ff775a674c7a6749f83d83 129 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 101 1.7E-8 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMD27_15385 f0efcd1a20ff775a674c7a6749f83d83 129 Gene3D G3DSA:3.30.160.100 1 103 1.1E-5 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMD27_00350 abd881160e425692d77df21058d1f4fc 729 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 518 721 2.1E-45 T 11-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AMD27_00350 abd881160e425692d77df21058d1f4fc 729 Pfam PF13807 G-rich domain on putative tyrosine kinase 381 461 1.4E-29 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMD27_00350 abd881160e425692d77df21058d1f4fc 729 Pfam PF13614 AAA domain 538 695 4.9E-13 T 11-10-2018 IPR025669 AAA domain AMD27_00350 abd881160e425692d77df21058d1f4fc 729 Gene3D G3DSA:3.40.50.300 456 728 2.7E-74 T 11-10-2018 AMD27_00350 abd881160e425692d77df21058d1f4fc 729 Pfam PF02706 Chain length determinant protein 10 106 1.0E-19 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMD27_00350 abd881160e425692d77df21058d1f4fc 729 SUPERFAMILY SSF52540 536 717 1.63E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_16075 2cc2da3b5b4be4c43ed3887f236df8ab 112 Gene3D G3DSA:3.30.70.100 1 111 1.1E-30 T 11-10-2018 AMD27_16075 2cc2da3b5b4be4c43ed3887f236df8ab 112 SUPERFAMILY SSF54975 1 104 5.89E-29 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMD27_16075 2cc2da3b5b4be4c43ed3887f236df8ab 112 SMART SM01034 2 96 3.0E-22 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMD27_16075 2cc2da3b5b4be4c43ed3887f236df8ab 112 Pfam PF04940 Sensors of blue-light using FAD 2 95 2.2E-25 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMD27_03105 0c794f88f15856e390f0bd75663b9dff 217 Pfam PF01810 LysE type translocator 18 211 1.3E-16 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_15530 e64cf0aa62c16c2e3ddc5621ba00c2a1 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 424 1.2E-74 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_15530 e64cf0aa62c16c2e3ddc5621ba00c2a1 455 PIRSF PIRSF006603 4 454 1.9E-102 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_15530 e64cf0aa62c16c2e3ddc5621ba00c2a1 455 Pfam PF01554 MatE 252 413 8.0E-29 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_15530 e64cf0aa62c16c2e3ddc5621ba00c2a1 455 Pfam PF01554 MatE 23 183 1.6E-30 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMD27_11960 ebb661550f1b018288e7364e642d3c74 112 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 16 105 1.0E-32 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_11960 ebb661550f1b018288e7364e642d3c74 112 Gene3D G3DSA:3.10.50.40 1 112 2.6E-42 T 11-10-2018 AMD27_11960 ebb661550f1b018288e7364e642d3c74 112 SUPERFAMILY SSF54534 4 110 1.63E-39 T 11-10-2018 AMD27_16535 be25485526d59a21ca54797c8842d2a9 201 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 40 201 6.4E-9 T 11-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 AMD27_11780 56679a8607d1b487bd2028cc56c321c1 205 SMART SM00563 46 158 1.2E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_11780 56679a8607d1b487bd2028cc56c321c1 205 SUPERFAMILY SSF69593 19 159 3.79E-18 T 11-10-2018 AMD27_11780 56679a8607d1b487bd2028cc56c321c1 205 Pfam PF01553 Acyltransferase 45 151 5.0E-10 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_10230 054c63b08bf38f6da931fe26d0aa0719 160 Gene3D G3DSA:3.40.250.10 31 160 7.9E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_10230 054c63b08bf38f6da931fe26d0aa0719 160 SMART SM00450 37 143 7.7E-15 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_10230 054c63b08bf38f6da931fe26d0aa0719 160 SUPERFAMILY SSF52821 25 158 2.62E-21 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily AMD27_10230 054c63b08bf38f6da931fe26d0aa0719 160 Pfam PF00581 Rhodanese-like domain 44 136 2.0E-10 T 11-10-2018 IPR001763 Rhodanese-like domain AMD27_15680 f03692e0af9d586a131017c2222d0677 274 Gene3D G3DSA:1.10.287.1120 2 256 3.0E-19 T 11-10-2018 AMD27_15680 f03692e0af9d586a131017c2222d0677 274 SUPERFAMILY SSF116734 44 265 3.11E-17 T 11-10-2018 AMD27_15680 f03692e0af9d586a131017c2222d0677 274 Gene3D G3DSA:3.90.220.20 56 213 3.0E-19 T 11-10-2018 AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 Pfam PF09318 Glycosyl transferase 1 domain A 11 200 2.1E-11 T 11-10-2018 IPR015397 Glycosyl transferase 1, domain A AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 Pfam PF00534 Glycosyl transferases group 1 331 489 2.7E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 SUPERFAMILY SSF53756 219 508 7.33E-49 T 11-10-2018 AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 Gene3D G3DSA:3.40.50.2000 4 170 1.2E-10 T 11-10-2018 AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 Gene3D G3DSA:3.40.50.2000 180 332 1.2E-18 T 11-10-2018 AMD27_04695 536a0d80d7073e5728fbb7d051751e92 509 Gene3D G3DSA:3.40.50.2000 333 494 1.6E-36 T 11-10-2018 AMD27_07950 4b102355e40416191c30fefae50e1351 346 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 334 2.5E-128 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMD27_07950 4b102355e40416191c30fefae50e1351 346 PIRSF PIRSF005508 1 346 8.9E-133 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMD27_07950 4b102355e40416191c30fefae50e1351 346 Pfam PF01758 Sodium Bile acid symporter family 51 247 2.9E-60 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMD27_07950 4b102355e40416191c30fefae50e1351 346 Gene3D G3DSA:1.20.1530.20 2 340 2.6E-23 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily AMD27_13460 b28cb6a0ce8e7ee1bc78abf2c6d6e49a 268 Gene3D G3DSA:1.10.260.40 18 108 5.9E-21 T 11-10-2018 AMD27_13460 b28cb6a0ce8e7ee1bc78abf2c6d6e49a 268 Pfam PF13464 Domain of unknown function (DUF4115) 197 266 9.9E-10 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 AMD27_13460 b28cb6a0ce8e7ee1bc78abf2c6d6e49a 268 Pfam PF13413 Helix-turn-helix domain 29 89 8.1E-18 T 11-10-2018 AMD27_10055 33ffc3327b977adc852e42999e3123b0 634 Gene3D G3DSA:3.30.2010.10 92 183 2.7E-15 T 11-10-2018 AMD27_10055 33ffc3327b977adc852e42999e3123b0 634 Pfam PF01435 Peptidase family M48 108 323 4.3E-6 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_04535 2b3e04e1def9fa9663c500827c86001b 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 28 243 4.3E-59 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMD27_04535 2b3e04e1def9fa9663c500827c86001b 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 245 9.9E-51 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMD27_04535 2b3e04e1def9fa9663c500827c86001b 246 SUPERFAMILY SSF64438 21 245 5.68E-66 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMD27_04535 2b3e04e1def9fa9663c500827c86001b 246 Gene3D G3DSA:3.60.140.10 11 246 6.0E-67 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily AMD27_04610 d3ce4bf15c7ad12c380effc58e6b2e30 318 PIRSF PIRSF007580 18 300 9.2E-52 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_04610 d3ce4bf15c7ad12c380effc58e6b2e30 318 Pfam PF10118 Predicted metal-dependent hydrolase 31 284 4.7E-61 T 11-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMD27_10420 bf0221d4936de8681632760c9c245e57 697 Pfam PF02554 Carbon starvation protein CstA 38 414 3.6E-171 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AMD27_10420 bf0221d4936de8681632760c9c245e57 697 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 597 5.2E-33 T 11-10-2018 IPR025299 CstA, C-terminal domain AMD27_17545 608f7d6efe2784b86fa1f899cbeb197f 375 Gene3D G3DSA:3.40.30.10 198 304 3.4E-5 T 11-10-2018 AMD27_17545 608f7d6efe2784b86fa1f899cbeb197f 375 SUPERFAMILY SSF52833 222 315 3.01E-7 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_17545 608f7d6efe2784b86fa1f899cbeb197f 375 Pfam PF13728 F plasmid transfer operon protein 52 317 7.4E-48 T 11-10-2018 IPR039555 F plasmid transfer operon protein AMD27_13745 b1509f7444c31e5412d30f5582a5751b 274 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 87 109 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMD27_13745 b1509f7444c31e5412d30f5582a5751b 274 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 53 217 8.2E-38 T 11-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMD27_13745 b1509f7444c31e5412d30f5582a5751b 274 Pfam PF01066 CDP-alcohol phosphatidyltransferase 46 109 2.4E-14 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMD27_13745 b1509f7444c31e5412d30f5582a5751b 274 Gene3D G3DSA:1.20.120.1760 36 190 8.1E-14 T 11-10-2018 AMD27_10160 ae7c64c968f30cf659fa0cc4a88f3b89 479 Pfam PF00916 Sulfate permease family 167 345 3.2E-26 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMD27_10160 ae7c64c968f30cf659fa0cc4a88f3b89 479 Pfam PF00916 Sulfate permease family 14 143 4.7E-26 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMD27_10160 ae7c64c968f30cf659fa0cc4a88f3b89 479 SUPERFAMILY SSF52091 392 476 3.73E-11 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_10160 ae7c64c968f30cf659fa0cc4a88f3b89 479 Pfam PF01740 STAS domain 398 471 1.5E-6 T 11-10-2018 IPR002645 STAS domain AMD27_10160 ae7c64c968f30cf659fa0cc4a88f3b89 479 Gene3D G3DSA:3.30.750.24 386 479 2.0E-24 T 11-10-2018 IPR036513 STAS domain superfamily AMD27_05840 0d39a7f37bf0ab35c7b93bcc1b688534 138 Pfam PF03061 Thioesterase superfamily 47 118 5.0E-11 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMD27_05840 0d39a7f37bf0ab35c7b93bcc1b688534 138 Gene3D G3DSA:3.10.129.10 4 138 9.9E-48 T 11-10-2018 AMD27_05840 0d39a7f37bf0ab35c7b93bcc1b688534 138 SUPERFAMILY SSF54637 10 136 4.42E-22 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_04420 c2748ef3afa84b2249802fbc23be9404 95 Gene3D G3DSA:3.30.70.260 8 95 3.6E-21 T 11-10-2018 AMD27_04420 c2748ef3afa84b2249802fbc23be9404 95 Pfam PF04359 Protein of unknown function (DUF493) 13 95 2.0E-23 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 AMD27_04420 c2748ef3afa84b2249802fbc23be9404 95 SUPERFAMILY SSF117991 9 95 2.62E-21 T 11-10-2018 IPR027471 YbeD-like domain superfamily AMD27_15350 c81cb348931a44d73d1df5c2f69f1342 272 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 263 1.1E-19 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMD27_15350 c81cb348931a44d73d1df5c2f69f1342 272 SUPERFAMILY SSF56219 14 270 3.14E-70 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_15350 c81cb348931a44d73d1df5c2f69f1342 272 Gene3D G3DSA:3.60.10.10 12 271 1.7E-78 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMD27_15350 c81cb348931a44d73d1df5c2f69f1342 272 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 14 269 1.2E-68 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMD27_15350 c81cb348931a44d73d1df5c2f69f1342 272 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 14 268 1.9E-65 T 11-10-2018 AMD27_09205 59ffb9aa5868bc5a995c65c8455b3e5b 302 Pfam PF14257 Domain of unknown function (DUF4349) 214 291 1.2E-7 T 11-10-2018 IPR025645 Domain of unknown function DUF4349 AMD27_09205 59ffb9aa5868bc5a995c65c8455b3e5b 302 Pfam PF14257 Domain of unknown function (DUF4349) 16 163 8.8E-13 T 11-10-2018 IPR025645 Domain of unknown function DUF4349 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Gene3D G3DSA:3.40.1190.10 91 317 3.7E-58 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 SUPERFAMILY SSF53244 314 452 9.16E-38 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 SUPERFAMILY SSF53623 97 312 4.45E-51 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 453 6.0E-203 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 453 57.151 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 SUPERFAMILY SSF51984 1 90 5.62E-21 T 11-10-2018 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Gene3D G3DSA:3.40.50.720 1 90 1.9E-33 T 11-10-2018 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Gene3D G3DSA:3.90.190.20 318 454 3.5E-30 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Pfam PF01225 Mur ligase family, catalytic domain 2 99 4.1E-16 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 388 1.5E-10 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMD27_16070 5281d8ace50cb22549ea77a78d75c958 454 Pfam PF08245 Mur ligase middle domain 108 295 4.0E-22 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMD27_06660 0c00601d4c09198404b21e1b5149076c 187 SUPERFAMILY SSF51905 29 182 2.4E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 1.9E-13 T 11-10-2018 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 1.9E-13 T 11-10-2018 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 1.9E-13 T 11-10-2018 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 1.9E-13 T 11-10-2018 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 PRINTS PR00173 Glutamate-aspartate symporter signature 320 339 1.9E-13 T 11-10-2018 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 Gene3D G3DSA:1.10.3860.10 2 399 4.1E-70 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 SUPERFAMILY SSF118215 10 396 2.48E-88 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 Pfam PF00375 Sodium:dicarboxylate symporter family 10 396 6.0E-66 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMD27_08015 1e336c2b64f29d3681b46970122a0d60 400 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 400 32.422 T 11-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Pfam PF08238 Sel1 repeat 240 276 0.2 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Pfam PF08238 Sel1 repeat 160 192 0.37 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Pfam PF08238 Sel1 repeat 127 149 62.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Pfam PF08238 Sel1 repeat 86 115 0.0011 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 SUPERFAMILY SSF81901 80 281 6.71E-15 T 11-10-2018 AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Gene3D G3DSA:1.25.40.10 155 289 5.8E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 SMART SM00671 240 278 16.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 SMART SM00671 85 120 0.12 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 SMART SM00671 156 192 6.1 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16395 e849e2b6612acdb176f6666f3c5ff15d 303 Gene3D G3DSA:1.25.40.10 45 154 2.0E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_10130 265c5862206021103d3149b9e9c29a3a 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 2.8E-17 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis AMD27_10130 265c5862206021103d3149b9e9c29a3a 65 Pfam PF02597 ThiS family 5 65 6.6E-12 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMD27_10130 265c5862206021103d3149b9e9c29a3a 65 SUPERFAMILY SSF54285 2 64 3.93E-16 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMD27_10130 265c5862206021103d3149b9e9c29a3a 65 Gene3D G3DSA:3.10.20.30 2 65 8.3E-18 T 11-10-2018 IPR012675 Beta-grasp domain superfamily AMD27_07520 3a1ac63bd7d11ce29c35e3c99d57ac5a 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 94 2.5E-22 T 11-10-2018 IPR011846 Cyd operon protein YbgE AMD27_14945 d7ea3ac5e6851bd20bd19aa26ffbcd66 454 SUPERFAMILY SSF103473 6 384 1.57E-58 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_14945 d7ea3ac5e6851bd20bd19aa26ffbcd66 454 Gene3D G3DSA:1.20.1250.20 1 384 3.7E-74 T 11-10-2018 AMD27_14945 d7ea3ac5e6851bd20bd19aa26ffbcd66 454 Pfam PF07690 Major Facilitator Superfamily 15 349 1.7E-41 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_14945 d7ea3ac5e6851bd20bd19aa26ffbcd66 454 Gene3D G3DSA:3.30.70.100 385 447 5.0E-6 T 11-10-2018 AMD27_14840 e27bb0100a9c17f0603ee860bbd0a4a6 316 Gene3D G3DSA:3.90.1200.10 104 314 8.5E-54 T 11-10-2018 AMD27_14840 e27bb0100a9c17f0603ee860bbd0a4a6 316 Pfam PF01636 Phosphotransferase enzyme family 28 253 3.2E-21 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase AMD27_14840 e27bb0100a9c17f0603ee860bbd0a4a6 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 90.954 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMD27_14840 e27bb0100a9c17f0603ee860bbd0a4a6 316 Gene3D G3DSA:3.30.200.20 1 101 2.9E-20 T 11-10-2018 AMD27_14840 e27bb0100a9c17f0603ee860bbd0a4a6 316 SUPERFAMILY SSF56112 5 313 6.27E-57 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_02110 0513e6b5d19ceec268991edf168b7720 159 PRINTS PR00502 NUDIX hydrolase family signature 38 52 5.5E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_02110 0513e6b5d19ceec268991edf168b7720 159 PRINTS PR00502 NUDIX hydrolase family signature 52 67 5.5E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMD27_02110 0513e6b5d19ceec268991edf168b7720 159 Gene3D G3DSA:3.90.79.10 2 146 1.7E-28 T 11-10-2018 AMD27_02110 0513e6b5d19ceec268991edf168b7720 159 Pfam PF00293 NUDIX domain 12 132 7.2E-19 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_02110 0513e6b5d19ceec268991edf168b7720 159 SUPERFAMILY SSF55811 10 141 1.49E-24 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_10565 7cb9f3e3d4e2295a809b89bd7a229321 206 Pfam PF09997 Predicted membrane protein (DUF2238) 43 191 1.3E-43 T 11-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 AMD27_15950 3413c4d942faf6e85c2c6666353bff90 602 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 602 4.0E-160 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMD27_15950 3413c4d942faf6e85c2c6666353bff90 602 PIRSF PIRSF028304 1 602 2.8E-165 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMD27_15950 3413c4d942faf6e85c2c6666353bff90 602 Pfam PF05947 Type VI secretion system, TssF 6 600 2.8E-145 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like AMD27_05215 ecb04bf2510a4cdb79506240b3204d2e 120 Pfam PF04076 Bacterial OB fold (BOF) protein 32 119 7.0E-25 T 11-10-2018 IPR005220 Bacterial OB-fold AMD27_05215 ecb04bf2510a4cdb79506240b3204d2e 120 Gene3D G3DSA:2.40.50.200 15 120 8.9E-29 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily AMD27_05215 ecb04bf2510a4cdb79506240b3204d2e 120 SUPERFAMILY SSF101756 32 119 5.89E-26 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily AMD27_11405 86d61aa394517e4a4a34d8252bde69d5 109 Pfam PF10711 Hypothetical protein (DUF2513) 2 76 2.6E-9 T 11-10-2018 IPR019650 Protein of unknown function DUF2513 AMD27_01750 73ddfd0e251b5f21ab76f9d144dc4dfc 409 Gene3D G3DSA:1.20.1720.10 18 391 6.4E-72 T 11-10-2018 AMD27_01750 73ddfd0e251b5f21ab76f9d144dc4dfc 409 Pfam PF07690 Major Facilitator Superfamily 25 360 1.1E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_01750 73ddfd0e251b5f21ab76f9d144dc4dfc 409 SUPERFAMILY SSF103473 7 389 7.98E-57 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_01750 73ddfd0e251b5f21ab76f9d144dc4dfc 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 86 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_15660 eca935f8744224077e9527d64f4615f9 507 Pfam PF15978 Tn7-like transposition protein D 325 445 8.2E-15 T 11-10-2018 IPR032750 Transposon Tn7 transposition protein TnsD, C-termianl AMD27_15660 eca935f8744224077e9527d64f4615f9 507 Pfam PF06527 TniQ 4 157 3.2E-20 T 11-10-2018 IPR009492 TniQ AMD27_09555 e600792752ae3c12e0d3b958ccc6a44f 389 SUPERFAMILY SSF53383 2 389 2.86E-91 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_09555 e600792752ae3c12e0d3b958ccc6a44f 389 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 388 1.3E-199 T 11-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 AMD27_09555 e600792752ae3c12e0d3b958ccc6a44f 389 Pfam PF00155 Aminotransferase class I and II 30 385 6.1E-49 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMD27_09555 e600792752ae3c12e0d3b958ccc6a44f 389 Gene3D G3DSA:3.90.1150.10 13 380 2.3E-122 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMD27_09555 e600792752ae3c12e0d3b958ccc6a44f 389 Gene3D G3DSA:3.40.640.10 42 287 2.3E-122 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_04040 63d4df34c3ab6ea0c0ae67eeb311dc41 261 SUPERFAMILY SSF52096 5 260 7.85E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_04040 63d4df34c3ab6ea0c0ae67eeb311dc41 261 Gene3D G3DSA:1.10.12.10 204 261 9.1E-18 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMD27_04040 63d4df34c3ab6ea0c0ae67eeb311dc41 261 Gene3D G3DSA:3.90.226.10 2 202 7.2E-54 T 11-10-2018 AMD27_04040 63d4df34c3ab6ea0c0ae67eeb311dc41 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 260 2.7E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMD27_15030 ee10e30cd5d8e97aaa5b950ba5fcc749 230 Pfam PF07885 Ion channel 132 214 6.3E-6 T 11-10-2018 IPR013099 Potassium channel domain AMD27_15030 ee10e30cd5d8e97aaa5b950ba5fcc749 230 SUPERFAMILY SSF81324 122 216 6.15E-11 T 11-10-2018 AMD27_15030 ee10e30cd5d8e97aaa5b950ba5fcc749 230 Gene3D G3DSA:1.10.287.70 117 217 5.3E-10 T 11-10-2018 AMD27_00380 46585618f310e292f0bbf1d005453758 184 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 181 3.2E-72 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMD27_00380 46585618f310e292f0bbf1d005453758 184 Gene3D G3DSA:2.60.120.10 1 184 1.0E-75 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_00380 46585618f310e292f0bbf1d005453758 184 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 181 8.9E-75 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMD27_00380 46585618f310e292f0bbf1d005453758 184 SUPERFAMILY SSF51182 1 182 4.51E-75 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_00380 46585618f310e292f0bbf1d005453758 184 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 177 9.0E-78 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMD27_11480 7dd4646533bc77fdd9b33feaa349397b 89 SUPERFAMILY SSF54523 1 86 1.02E-13 T 11-10-2018 AMD27_11480 7dd4646533bc77fdd9b33feaa349397b 89 Gene3D G3DSA:3.30.1300.30 1 86 3.0E-14 T 11-10-2018 AMD27_11480 7dd4646533bc77fdd9b33feaa349397b 89 Pfam PF03895 YadA-like membrane anchor domain 31 86 1.9E-10 T 11-10-2018 IPR005594 YadA-like, C-terminal AMD27_15160 b8f09635a41042e9341ba1543c1544d3 246 Pfam PF01925 Sulfite exporter TauE/SafE 11 204 2.3E-12 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_05790 f7693f76b2bae24bea80302116c03713 247 Gene3D G3DSA:2.40.160.170 22 247 2.3E-74 T 11-10-2018 AMD27_05790 f7693f76b2bae24bea80302116c03713 247 SUPERFAMILY SSF56925 41 202 3.66E-8 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMD27_14145 fdc190abac61551f0b4922c3ffe7e531 261 Pfam PF13460 NAD(P)H-binding 9 197 4.2E-11 T 11-10-2018 IPR016040 NAD(P)-binding domain AMD27_14145 fdc190abac61551f0b4922c3ffe7e531 261 SUPERFAMILY SSF51735 13 233 6.49E-24 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_14145 fdc190abac61551f0b4922c3ffe7e531 261 Gene3D G3DSA:3.40.50.720 1 260 1.4E-51 T 11-10-2018 AMD27_05905 6fb845cc2f8cf272f92d8a2069b27700 124 Pfam PF16137 Domain of unknown function (DUF4845) 30 112 2.0E-14 T 11-10-2018 IPR032314 Protein of unknown function DUF4845 AMD27_01110 12593dbedaa5681642e42f9eab389da8 384 Gene3D G3DSA:3.30.565.10 248 380 1.2E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMD27_01110 12593dbedaa5681642e42f9eab389da8 384 Pfam PF06580 Histidine kinase 195 272 9.4E-25 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AMD27_11940 f3213d54fdb209f43389d251deb84802 374 Pfam PF01757 Acyltransferase family 8 350 2.1E-24 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMD27_09505 027055039e11adab25fdd14a8ef07c0b 469 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 433 3.0E-155 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMD27_09505 027055039e11adab25fdd14a8ef07c0b 469 SUPERFAMILY SSF51679 5 436 6.28E-116 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_09505 027055039e11adab25fdd14a8ef07c0b 469 PIRSF PIRSF000337 5 448 5.1E-134 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMD27_09505 027055039e11adab25fdd14a8ef07c0b 469 Pfam PF00296 Luciferase-like monooxygenase 30 391 5.3E-56 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMD27_09505 027055039e11adab25fdd14a8ef07c0b 469 Gene3D G3DSA:3.20.20.30 5 457 1.8E-138 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMD27_10360 08f22a957469a48c096cbaa12f37c1cf 126 Pfam PF01042 Endoribonuclease L-PSP 13 125 3.9E-32 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMD27_10360 08f22a957469a48c096cbaa12f37c1cf 126 Hamap MF_00831 Putative aminoacrylate peracid reductase RutC [rutC]. 1 126 42.337 T 11-10-2018 IPR019898 Putative aminoacrylate peracid reductase RutC AMD27_10360 08f22a957469a48c096cbaa12f37c1cf 126 Gene3D G3DSA:3.30.1330.40 1 126 9.0E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_10360 08f22a957469a48c096cbaa12f37c1cf 126 TIGRFAM TIGR03610 RutC: pyrimidine utilization protein C 1 126 1.7E-73 T 11-10-2018 IPR019898 Putative aminoacrylate peracid reductase RutC AMD27_10360 08f22a957469a48c096cbaa12f37c1cf 126 SUPERFAMILY SSF55298 1 126 1.73E-35 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMD27_07180 06a837088f427c594f7b5b0cae896e7a 145 Pfam PF13279 Thioesterase-like superfamily 20 138 9.3E-15 T 11-10-2018 AMD27_07180 06a837088f427c594f7b5b0cae896e7a 145 Gene3D G3DSA:3.10.129.10 2 142 4.2E-50 T 11-10-2018 AMD27_07180 06a837088f427c594f7b5b0cae896e7a 145 SUPERFAMILY SSF54637 7 142 1.95E-39 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_04440 e04f716a7e022c736fc1fc5af801ae09 197 Pfam PF09335 SNARE associated Golgi protein 22 152 3.4E-23 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMD27_10115 390e13ada312b47186d4a37a4ab4c286 74 SUPERFAMILY SSF64307 4 73 1.57E-14 T 11-10-2018 IPR036868 TusA-like domain superfamily AMD27_10115 390e13ada312b47186d4a37a4ab4c286 74 Gene3D G3DSA:3.30.110.40 1 74 3.7E-13 T 11-10-2018 IPR036868 TusA-like domain superfamily AMD27_10115 390e13ada312b47186d4a37a4ab4c286 74 Pfam PF01206 Sulfurtransferase TusA 5 73 3.5E-15 T 11-10-2018 IPR001455 TusA-like domain AMD27_12815 02e85894e18d14db63d1c31a1a575cfb 149 Gene3D G3DSA:3.10.180.10 7 149 3.0E-41 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_12815 02e85894e18d14db63d1c31a1a575cfb 149 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 142 1.2E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMD27_12815 02e85894e18d14db63d1c31a1a575cfb 149 SUPERFAMILY SSF54593 1 144 1.11E-27 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_13400 667911e040251fbece7725528284e534 245 Gene3D G3DSA:3.90.550.10 2 228 7.4E-26 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_13400 667911e040251fbece7725528284e534 245 SUPERFAMILY SSF53448 4 232 1.07E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_13400 667911e040251fbece7725528284e534 245 Pfam PF00535 Glycosyl transferase family 2 4 127 3.1E-18 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 Pfam PF00106 short chain dehydrogenase 16 213 2.3E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 SUPERFAMILY SSF51735 12 245 5.0E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 8.3E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 8.3E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 8.3E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 8.3E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 8.3E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 Gene3D G3DSA:3.40.50.720 2 248 8.1E-66 T 11-10-2018 AMD27_00260 5f72c92790016f13d0ad255d0e85c1aa 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMD27_02120 d4340c16df50ec421e91159565bdc121 295 SUPERFAMILY SSF103481 201 294 8.5E-9 T 11-10-2018 AMD27_02120 d4340c16df50ec421e91159565bdc121 295 SUPERFAMILY SSF103481 39 145 1.23E-6 T 11-10-2018 AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 Pfam PF00462 Glutaredoxin 5 65 1.3E-22 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 Gene3D G3DSA:3.40.30.10 1 85 5.9E-30 T 11-10-2018 AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 9.0E-32 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 PRINTS PR00160 Glutaredoxin signature 48 61 2.3E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 PRINTS PR00160 Glutaredoxin signature 5 23 2.3E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 PRINTS PR00160 Glutaredoxin signature 62 75 2.3E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup AMD27_13610 95add5acd7d59da2c1e8e1ce9e396a6a 85 SUPERFAMILY SSF52833 3 84 1.15E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_04905 fc565476b7bc94b2c0d25f62d3f532fb 239 Pfam PF04972 BON domain 61 113 1.5E-9 T 11-10-2018 IPR007055 BON domain AMD27_07525 0efecb3cca533b99f15964b989f393d4 33 Pfam PF08173 Membrane bound YbgT-like protein 1 26 3.1E-12 T 11-10-2018 IPR012994 Membrane bound YbgT-like AMD27_07525 0efecb3cca533b99f15964b989f393d4 33 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 28 1.1E-12 T 11-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 AMD27_07965 40e8e8d540727f6bb9c3034c6bd3004c 142 Gene3D G3DSA:3.40.30.10 2 142 1.3E-55 T 11-10-2018 AMD27_07965 40e8e8d540727f6bb9c3034c6bd3004c 142 SUPERFAMILY SSF52833 4 139 3.1E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_07965 40e8e8d540727f6bb9c3034c6bd3004c 142 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 117 2.3E-38 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AMD27_07965 40e8e8d540727f6bb9c3034c6bd3004c 142 Pfam PF03960 ArsC family 8 114 3.2E-16 T 11-10-2018 IPR006660 Arsenate reductase-like AMD27_00970 344b78cba1d0eeda0fa5fadfca45a01a 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 10 354 1.4E-65 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMD27_00970 344b78cba1d0eeda0fa5fadfca45a01a 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 7 354 7.2E-103 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AMD27_05865 e59e4df53c5ce7eb181af0e37e62b3d0 93 SUPERFAMILY SSF46689 45 90 5.2E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_05865 e59e4df53c5ce7eb181af0e37e62b3d0 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_14100 6c8ac6db5226730d2fb0b019091b03d8 527 Gene3D G3DSA:3.40.50.300 203 380 1.8E-21 T 11-10-2018 AMD27_14100 6c8ac6db5226730d2fb0b019091b03d8 527 Pfam PF05872 Bacterial protein of unknown function (DUF853) 11 526 7.5E-229 T 11-10-2018 IPR033186 Helicase HerA-like C-terminal AMD27_14100 6c8ac6db5226730d2fb0b019091b03d8 527 Gene3D G3DSA:3.40.50.300 4 152 2.2E-10 T 11-10-2018 AMD27_14100 6c8ac6db5226730d2fb0b019091b03d8 527 SUPERFAMILY SSF52540 15 386 6.7E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_13385 2e9d14cdcbe498dd4e98684ac9b00025 139 PIRSF PIRSF003230 1 135 8.1E-21 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMD27_13385 2e9d14cdcbe498dd4e98684ac9b00025 139 SUPERFAMILY SSF54637 7 133 2.48E-31 T 11-10-2018 IPR029069 HotDog domain superfamily AMD27_13385 2e9d14cdcbe498dd4e98684ac9b00025 139 Gene3D G3DSA:3.10.129.10 3 134 1.3E-24 T 11-10-2018 AMD27_13385 2e9d14cdcbe498dd4e98684ac9b00025 139 Pfam PF13279 Thioesterase-like superfamily 9 116 2.8E-10 T 11-10-2018 AMD27_11365 1a0d96434917ba009b13ddd6f5cdb10b 140 Pfam PF03928 Haem-degrading 5 129 4.3E-27 T 11-10-2018 IPR005624 Haem-degrading AMD27_11365 1a0d96434917ba009b13ddd6f5cdb10b 140 Gene3D G3DSA:3.30.450.150 1 135 3.9E-39 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_11365 1a0d96434917ba009b13ddd6f5cdb10b 140 SUPERFAMILY SSF143744 2 133 9.42E-34 T 11-10-2018 IPR038084 GlcG-like domain superfamily AMD27_12835 18a1d9534d2b5e6d16646acfa0b62fbf 241 Pfam PF02517 CAAX protease self-immunity 130 223 6.1E-14 T 11-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AMD27_16110 4c5149cf9e61670314375386d75ce653 320 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 313 1.1E-116 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMD27_16110 4c5149cf9e61670314375386d75ce653 320 Pfam PF03741 Integral membrane protein TerC family 80 282 6.1E-52 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMD27_13255 e092b17ca60cdb6ed7b739b0c65a6125 110 Gene3D G3DSA:1.10.260.40 4 93 2.0E-6 T 11-10-2018 AMD27_13255 e092b17ca60cdb6ed7b739b0c65a6125 110 SUPERFAMILY SSF47413 9 74 1.73E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_12630 1493adfaa387be93f21e25f6424664be 269 Pfam PF01578 Cytochrome C assembly protein 44 265 1.4E-21 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMD27_13150 9baaf4d7c9133450364582cd2cb2fc8d 122 SUPERFAMILY SSF160719 18 103 7.85E-23 T 11-10-2018 AMD27_13150 9baaf4d7c9133450364582cd2cb2fc8d 122 Gene3D G3DSA:3.10.450.40 4 119 9.7E-17 T 11-10-2018 AMD27_13150 9baaf4d7c9133450364582cd2cb2fc8d 122 Pfam PF04965 Gene 25-like lysozyme 19 103 2.1E-12 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AMD27_07890 4956438ffd710ca8c413aec6e6ca9a2c 431 SUPERFAMILY SSF56935 87 431 3.14E-29 T 11-10-2018 AMD27_07890 4956438ffd710ca8c413aec6e6ca9a2c 431 Gene3D G3DSA:2.40.160.10 90 431 1.1E-7 T 11-10-2018 IPR023614 Porin domain superfamily AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 Pfam PF00210 Ferritin-like domain 8 143 7.7E-35 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 6.0E-46 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PIRSF PIRSF002560 1 154 1.7E-59 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 SUPERFAMILY SSF47240 1 154 6.42E-47 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 3 22 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 128 149 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 23 43 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 44 64 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 106 126 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 PRINTS PR00601 Bacterioferritin signature 85 105 3.2E-41 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMD27_12565 ffeb99ced8bbdc562e4e7d2b7f77d0eb 154 Gene3D G3DSA:1.20.1260.10 1 154 3.0E-59 T 11-10-2018 IPR012347 Ferritin-like AMD27_03310 8ed61983ba948162e1adcdd4088ea09e 299 Gene3D G3DSA:3.40.190.10 28 273 2.4E-89 T 11-10-2018 AMD27_03310 8ed61983ba948162e1adcdd4088ea09e 299 SUPERFAMILY SSF53850 13 271 9.77E-59 T 11-10-2018 AMD27_03310 8ed61983ba948162e1adcdd4088ea09e 299 SMART SM00062 39 270 1.9E-47 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_03310 8ed61983ba948162e1adcdd4088ea09e 299 Gene3D G3DSA:3.40.190.10 132 227 2.4E-89 T 11-10-2018 AMD27_03310 8ed61983ba948162e1adcdd4088ea09e 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 268 1.3E-45 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMD27_05600 f450b3e95cebb70ba2d4a28b417bc653 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMD27_05600 f450b3e95cebb70ba2d4a28b417bc653 432 Gene3D G3DSA:1.20.1250.20 21 431 4.8E-77 T 11-10-2018 AMD27_05600 f450b3e95cebb70ba2d4a28b417bc653 432 Pfam PF00083 Sugar (and other) transporter 57 423 9.8E-35 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMD27_05600 f450b3e95cebb70ba2d4a28b417bc653 432 SUPERFAMILY SSF103473 13 430 1.31E-79 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_11625 8fb4dfe1d3cc6f5629c3295fb8d78add 207 SUPERFAMILY SSF51161 65 203 8.46E-39 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily AMD27_11625 8fb4dfe1d3cc6f5629c3295fb8d78add 207 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 110 144 3.8E-10 T 11-10-2018 IPR001451 Hexapeptide repeat AMD27_11625 8fb4dfe1d3cc6f5629c3295fb8d78add 207 Gene3D G3DSA:2.160.10.10 7 206 9.6E-58 T 11-10-2018 AMD27_11625 8fb4dfe1d3cc6f5629c3295fb8d78add 207 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 PIRSF PIRSF006232 3 287 2.7E-81 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 SUPERFAMILY SSF51182 4 286 2.22E-72 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 Pfam PF02678 Pirin 22 127 4.7E-29 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 Gene3D G3DSA:2.60.120.10 17 282 9.7E-79 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 Pfam PF05726 Pirin C-terminal cupin domain 187 286 3.7E-27 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMD27_10780 f2c209d669549d4273099896bc9cc87f 287 Gene3D G3DSA:2.60.120.10 149 256 9.7E-79 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_10125 e29b7f59778b7edc76403f6704d818d4 121 Pfam PF04241 Protein of unknown function (DUF423) 16 102 2.6E-26 T 11-10-2018 IPR006696 Protein of unknown function DUF423 AMD27_07285 a3aee6e23c483499000106a7e94948ff 390 SUPERFAMILY SSF53756 7 323 2.32E-27 T 11-10-2018 AMD27_07285 a3aee6e23c483499000106a7e94948ff 390 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 390 35.934 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMD27_07285 a3aee6e23c483499000106a7e94948ff 390 Pfam PF02684 Lipid-A-disaccharide synthetase 8 363 5.0E-104 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMD27_07285 a3aee6e23c483499000106a7e94948ff 390 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 373 4.6E-100 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMD27_13935 d2ffb56d1ee2e8b96cc3be3f7c0be695 86 SUPERFAMILY SSF109910 6 81 1.7E-19 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMD27_13935 d2ffb56d1ee2e8b96cc3be3f7c0be695 86 Pfam PF03937 Flavinator of succinate dehydrogenase 10 79 1.2E-18 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase AMD27_13935 d2ffb56d1ee2e8b96cc3be3f7c0be695 86 Gene3D G3DSA:1.10.150.250 5 85 1.5E-21 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMD27_08485 475fa0738b7c219fac1d1b3d4e82f4e7 81 Pfam PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 8 69 2.4E-19 T 11-10-2018 IPR031856 Putative bacterial antitoxin YdaS AMD27_08485 475fa0738b7c219fac1d1b3d4e82f4e7 81 Gene3D G3DSA:1.10.260.40 6 81 8.8E-22 T 11-10-2018 AMD27_08485 475fa0738b7c219fac1d1b3d4e82f4e7 81 SUPERFAMILY SSF47413 8 67 2.19E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMD27_10615 8d54fe6e5bf001160e156ee27535ac9c 212 SUPERFAMILY SSF74653 134 211 2.55E-8 T 11-10-2018 AMD27_10615 8d54fe6e5bf001160e156ee27535ac9c 212 Gene3D G3DSA:3.30.1150.10 113 210 2.4E-12 T 11-10-2018 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 Gene3D G3DSA:3.40.50.1000 5 229 2.0E-40 T 11-10-2018 IPR023214 HAD superfamily AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 205 2.0E-27 T 11-10-2018 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 SUPERFAMILY SSF56784 3 234 1.25E-39 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 166 5.4E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 5.4E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 196 209 5.4E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 119 132 5.4E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 109 201 2.2E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_11770 5d83d29ce0c04a53fe928d4f40c5df84 235 Gene3D G3DSA:1.10.150.240 16 107 2.0E-40 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 SUPERFAMILY SSF46955 2 123 6.96E-29 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.9E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.9E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.9E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 Pfam PF13411 MerR HTH family regulatory protein 3 68 1.6E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 Gene3D G3DSA:1.10.1660.10 1 122 8.9E-32 T 11-10-2018 AMD27_04775 4a00fcc45b3935d58f18dfded5f8b172 125 SMART SM00422 2 70 6.6E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMD27_05570 ec81a8d997c35e056da5e36e74d2dc6f 510 Gene3D G3DSA:3.40.640.10 113 372 1.5E-125 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMD27_05570 ec81a8d997c35e056da5e36e74d2dc6f 510 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 312 333 - T 11-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 AMD27_05570 ec81a8d997c35e056da5e36e74d2dc6f 510 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 82 428 8.3E-60 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMD27_05570 ec81a8d997c35e056da5e36e74d2dc6f 510 Gene3D G3DSA:3.90.1150.170 48 487 1.5E-125 T 11-10-2018 AMD27_05570 ec81a8d997c35e056da5e36e74d2dc6f 510 SUPERFAMILY SSF53383 21 496 1.46E-112 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMD27_15135 f5cf7300ab178aef6a90b15f64e3bf46 139 SUPERFAMILY SSF55331 27 129 6.41E-8 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_15135 f5cf7300ab178aef6a90b15f64e3bf46 139 Gene3D G3DSA:3.30.429.10 10 129 1.1E-10 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_08455 76f00d4f34f9daafd069630936d8e062 86 SUPERFAMILY SSF46785 7 59 9.11E-6 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_13180 b629942eb7e14348eaf158e21b08609b 208 Pfam PF17482 Phage tail sheath C-terminal domain 85 186 2.7E-5 T 11-10-2018 IPR020287 Tail sheath protein, C-terminal domain AMD27_13180 b629942eb7e14348eaf158e21b08609b 208 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 9 84 7.8E-11 T 11-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain AMD27_05295 900a8132378c13c6ae8ddb7dca2e6a36 209 Gene3D G3DSA:3.40.50.1820 1 209 1.6E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05295 900a8132378c13c6ae8ddb7dca2e6a36 209 Pfam PF12146 Serine aminopeptidase, S33 50 134 2.3E-7 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_05295 900a8132378c13c6ae8ddb7dca2e6a36 209 SUPERFAMILY SSF53474 3 207 8.81E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_01785 81cf87d63733727e43a42e17bc672c19 214 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 150 2.1E-17 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMD27_01785 81cf87d63733727e43a42e17bc672c19 214 Gene3D G3DSA:3.40.50.300 1 208 4.7E-40 T 11-10-2018 AMD27_01785 81cf87d63733727e43a42e17bc672c19 214 PIRSF PIRSF009320 1 205 4.8E-31 T 11-10-2018 AMD27_01785 81cf87d63733727e43a42e17bc672c19 214 SUPERFAMILY SSF52540 1 205 8.07E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_06930 b3228e22ae5d6342faa8fac341bd1ede 331 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 82 330 6.2E-59 T 11-10-2018 IPR020049 Protein of unknown function DUF2184 AMD27_06930 b3228e22ae5d6342faa8fac341bd1ede 331 PIRSF PIRSF029202 19 330 2.9E-44 T 11-10-2018 IPR020049 Protein of unknown function DUF2184 AMD27_08980 b9a1fdacf6352dd6d69a6c374523676b 250 SUPERFAMILY SSF109604 58 190 7.85E-11 T 11-10-2018 AMD27_08980 b9a1fdacf6352dd6d69a6c374523676b 250 Gene3D G3DSA:1.10.3210.10 58 223 8.8E-7 T 11-10-2018 AMD27_09040 f4a00c0c2d1615fcae148834cd7b459a 150 Pfam PF13328 HD domain 7 87 4.0E-7 T 11-10-2018 IPR003607 HD/PDEase domain AMD27_09040 f4a00c0c2d1615fcae148834cd7b459a 150 Gene3D G3DSA:1.10.3210.10 1 149 6.5E-23 T 11-10-2018 AMD27_09040 f4a00c0c2d1615fcae148834cd7b459a 150 SUPERFAMILY SSF109604 2 129 1.32E-22 T 11-10-2018 AMD27_14185 c784df5e30d41df0b313193c0a46f694 223 Pfam PF02470 MlaD protein 38 164 4.5E-28 T 11-10-2018 IPR003399 Mce/MlaD AMD27_09945 0c0a6e6ac309e7caf15a9352ab0c4c8f 111 Pfam PF16309 Domian of unknown function (DUF4951) 27 109 1.1E-39 T 11-10-2018 IPR032538 Protein of unknown function DUF4951 AMD27_09945 0c0a6e6ac309e7caf15a9352ab0c4c8f 111 Gene3D G3DSA:1.20.1280.230 6 109 3.5E-42 T 11-10-2018 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 SMART SM00732 8 108 1.8E-26 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 8 143 20.197 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 Pfam PF03652 Holliday junction resolvase 9 139 4.8E-33 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 11 139 4.0E-29 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 Gene3D G3DSA:3.30.420.140 7 141 1.9E-33 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMD27_01410 7d8a98fdeeaa3769ae650b7575a6113d 147 SUPERFAMILY SSF53098 8 140 5.46E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily AMD27_14800 cc53b2494c905f08891757f73121682f 182 Pfam PF05656 Protein of unknown function (DUF805) 12 124 1.3E-20 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AMD27_01800 26682b5b2cfe43c8c86f96a2338eec82 135 SUPERFAMILY SSF141066 36 134 2.49E-20 T 11-10-2018 IPR036331 Chagasin-like superfamily AMD27_01800 26682b5b2cfe43c8c86f96a2338eec82 135 Pfam PF09394 Chagasin family peptidase inhibitor I42 45 127 2.7E-15 T 11-10-2018 IPR018990 Proteinase inhibitor I42, chagasin AMD27_01800 26682b5b2cfe43c8c86f96a2338eec82 135 Gene3D G3DSA:2.60.40.2020 28 135 1.6E-21 T 11-10-2018 IPR036331 Chagasin-like superfamily AMD27_15435 19ba7c6b9932d32f28a40c9deac88651 427 Gene3D G3DSA:3.40.50.2300 164 412 1.2E-138 T 11-10-2018 AMD27_15435 19ba7c6b9932d32f28a40c9deac88651 427 Pfam PF13433 Periplasmic binding protein domain 49 426 1.6E-173 T 11-10-2018 AMD27_15435 19ba7c6b9932d32f28a40c9deac88651 427 Gene3D G3DSA:3.40.50.2300 51 393 1.2E-138 T 11-10-2018 AMD27_15435 19ba7c6b9932d32f28a40c9deac88651 427 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 49 422 1.4E-180 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AMD27_15435 19ba7c6b9932d32f28a40c9deac88651 427 SUPERFAMILY SSF53822 48 425 2.5E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 Gene3D G3DSA:1.25.40.10 25 223 9.8E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 SMART SM00671 72 106 1.4 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 SMART SM00671 186 222 230.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 SMART SM00671 107 142 2.3E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 SUPERFAMILY SSF81901 45 147 9.02E-15 T 11-10-2018 AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 Pfam PF08238 Sel1 repeat 108 141 1.3E-5 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_16390 918fd7e65235476493cf40e09085f9d2 226 Pfam PF08238 Sel1 repeat 74 97 0.023 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_03430 6366c20a214fd59b5c16e322233cedca 347 Pfam PF01435 Peptidase family M48 186 336 3.9E-22 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_04140 79f9eb86d9ed3a83057c12cf6c640b19 837 Pfam PF02687 FtsX-like permease family 303 398 6.5E-6 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMD27_04140 79f9eb86d9ed3a83057c12cf6c640b19 837 Pfam PF02687 FtsX-like permease family 740 827 4.5E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 169 197 6.2E-40 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 23 50 6.2E-40 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 118 144 6.2E-40 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 100 118 6.2E-40 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 Pfam PF00902 Sec-independent protein translocase protein (TatC) 26 236 3.4E-60 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 20 253 15.458 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_02300 6b317df5839081658ac169a6b8b17e2a 256 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 24 241 6.3E-65 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_17575 22d686aa01ac17bedd8572e53830656b 602 Pfam PF13245 AAA domain 21 279 3.2E-14 T 11-10-2018 AMD27_17575 22d686aa01ac17bedd8572e53830656b 602 SUPERFAMILY SSF52540 12 586 1.46E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_17575 22d686aa01ac17bedd8572e53830656b 602 Pfam PF13361 UvrD-like helicase C-terminal domain 454 583 9.4E-12 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMD27_13825 deb70a5f59bbdfeda646759cba9cc286 237 Pfam PF11306 Protein of unknown function (DUF3108) 30 232 5.8E-23 T 11-10-2018 IPR021457 Protein of unknown function DUF3108 AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 Pfam PF01471 Putative peptidoglycan binding domain 142 187 2.9E-10 T 11-10-2018 IPR002477 Peptidoglycan binding-like AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 SUPERFAMILY SSF141523 279 407 2.49E-27 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 SUPERFAMILY SSF47090 140 188 1.11E-11 T 11-10-2018 IPR036365 PGBD-like superfamily AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 Gene3D G3DSA:2.40.440.10 221 411 3.0E-44 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 Gene3D G3DSA:1.10.101.10 136 196 1.0E-10 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMD27_11335 4a34ce665c3ef8fbbf7c7ec8abb83333 411 Pfam PF03734 L,D-transpeptidase catalytic domain 279 406 1.6E-18 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMD27_12955 c419d2c16f6c93396fb72e19f4a3ceaf 424 Pfam PF04932 O-Antigen ligase 202 353 9.4E-22 T 11-10-2018 IPR007016 O-antigen ligase-related AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 SUPERFAMILY SSF103088 82 198 9.42E-32 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 PRINTS PR01021 OMPA domain signature 99 121 6.3E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 PRINTS PR01021 OMPA domain signature 128 143 6.3E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 PRINTS PR01021 OMPA domain signature 143 159 6.3E-11 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 Gene3D G3DSA:3.30.1330.60 74 198 4.1E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily AMD27_17490 121ad42cda6b2033a16f1a05d9981f4e 202 Pfam PF00691 OmpA family 99 192 6.8E-20 T 11-10-2018 IPR006665 OmpA-like domain AMD27_13915 59c6c281d1cad122a03754cd7c7ded11 747 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 308 738 2.2E-16 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMD27_00965 a95a09d423e5bec4414f6a11d9147aac 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 346 2.1E-72 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMD27_00965 a95a09d423e5bec4414f6a11d9147aac 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 344 2.9E-94 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AMD27_11945 c4f0280f16c4759eb25db19b43afa252 138 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 6 138 1.0E-24 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 AMD27_11945 c4f0280f16c4759eb25db19b43afa252 138 Pfam PF13994 PgaD-like protein 7 135 6.7E-19 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 AMD27_16150 910a90c3afa4c33145025703ea5ffa62 120 Gene3D G3DSA:2.40.50.200 16 120 2.2E-22 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily AMD27_16150 910a90c3afa4c33145025703ea5ffa62 120 SUPERFAMILY SSF101756 30 118 2.75E-20 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily AMD27_16150 910a90c3afa4c33145025703ea5ffa62 120 Pfam PF04076 Bacterial OB fold (BOF) protein 32 117 1.2E-18 T 11-10-2018 IPR005220 Bacterial OB-fold AMD27_03370 8498bb85c77f5ae9e90c1573fa07452d 554 Gene3D G3DSA:2.40.160.60 34 554 1.0E-58 T 11-10-2018 AMD27_03370 8498bb85c77f5ae9e90c1573fa07452d 554 SUPERFAMILY SSF56935 30 553 1.16E-52 T 11-10-2018 AMD27_03370 8498bb85c77f5ae9e90c1573fa07452d 554 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 29 553 8.8E-70 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD27_03090 e17c12af47e7b23e312465f34cc32561 168 Pfam PF01609 Transposase DDE domain 4 162 8.6E-22 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_00770 e17c12af47e7b23e312465f34cc32561 168 Pfam PF01609 Transposase DDE domain 4 162 8.6E-22 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_05230 1932986c88a06d4c83ef63e1edb1d2e6 56 Gene3D G3DSA:2.10.70.10 19 56 8.6E-18 T 11-10-2018 AMD27_05230 1932986c88a06d4c83ef63e1edb1d2e6 56 Pfam PF10636 Hemin uptake protein hemP 21 56 1.4E-16 T 11-10-2018 IPR019600 Hemin uptake protein HemP AMD27_12095 d0f1397e1b39ccffc947d1a407de7c83 286 Pfam PF08907 Domain of unknown function (DUF1853) 17 248 1.1E-43 T 11-10-2018 IPR015003 Protein of unknown function DUF1853 AMD27_07595 d0537226348f41cfde787c906a99d7f5 471 Pfam PF02667 Short chain fatty acid transporter 8 456 1.4E-91 T 11-10-2018 IPR006160 Short chain fatty acid transporter AtoE AMD27_03470 6f19e58640d9cd5b1c4f088d7144f652 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 1.1E-27 T 11-10-2018 AMD27_03470 6f19e58640d9cd5b1c4f088d7144f652 215 SUPERFAMILY SSF56784 2 214 2.51E-50 T 11-10-2018 IPR036412 HAD-like superfamily AMD27_03470 6f19e58640d9cd5b1c4f088d7144f652 215 Gene3D G3DSA:1.10.150.240 16 84 5.0E-57 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMD27_03470 6f19e58640d9cd5b1c4f088d7144f652 215 Gene3D G3DSA:3.40.50.1000 5 204 5.0E-57 T 11-10-2018 IPR023214 HAD superfamily AMD27_03470 6f19e58640d9cd5b1c4f088d7144f652 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 88 178 1.4E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMD27_09665 b7aa3b7ce2d3a89492cd85f02e80a4ac 140 Gene3D G3DSA:3.30.420.270 60 131 8.2E-6 T 11-10-2018 AMD27_09665 b7aa3b7ce2d3a89492cd85f02e80a4ac 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 134 5.3E-23 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMD27_04325 0626ae55f5eade54bfa8beec10418f25 270 Gene3D G3DSA:3.30.565.40 57 176 4.9E-15 T 11-10-2018 AMD27_04325 0626ae55f5eade54bfa8beec10418f25 270 Gene3D G3DSA:3.90.640.20 178 264 1.2E-18 T 11-10-2018 IPR037126 PdaC/RsiV-like superfamily AMD27_04325 0626ae55f5eade54bfa8beec10418f25 270 Pfam PF11738 Protein of unknown function (DUF3298) 208 249 3.1E-8 T 11-10-2018 IPR021729 Domain of unknown function DUF3298 AMD27_06560 363067c149433fbdee936036e070b5aa 125 SUPERFAMILY SSF46785 15 120 2.77E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_06560 363067c149433fbdee936036e070b5aa 125 Pfam PF01638 HxlR-like helix-turn-helix 28 115 3.1E-27 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type AMD27_06560 363067c149433fbdee936036e070b5aa 125 Gene3D G3DSA:1.10.10.10 4 125 5.5E-39 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_04745 fcba8a0317243e9433917fd98c81ec47 258 PIRSF PIRSF006157 1 258 2.4E-80 T 11-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AMD27_04745 fcba8a0317243e9433917fd98c81ec47 258 Gene3D G3DSA:3.40.830.10 2 258 1.1E-83 T 11-10-2018 AMD27_04745 fcba8a0317243e9433917fd98c81ec47 258 SUPERFAMILY SSF53213 6 258 1.1E-80 T 11-10-2018 AMD27_04745 fcba8a0317243e9433917fd98c81ec47 258 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 257 1.8E-40 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMD27_15105 f73dc141e67a95685e10f6fb3713b8e5 156 Pfam PF13359 DDE superfamily endonuclease 8 137 5.5E-19 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_08435 097c8feb19f672790f7196454e6f1ddf 275 Pfam PF05488 PAAR motif 8 78 5.3E-17 T 11-10-2018 IPR008727 PAAR motif AMD27_08435 097c8feb19f672790f7196454e6f1ddf 275 Gene3D G3DSA:2.60.200.60 2 84 3.3E-8 T 11-10-2018 AMD27_05940 75f43a3c8e37d3ee312d81649a874c30 277 Pfam PF10670 Domain of unknown function (DUF4198) 21 254 1.9E-22 T 11-10-2018 IPR019613 Protein of unknown function DUF4198 AMD27_09755 298c4b1612d010dd63db496a06c484d8 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 3.6E-47 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMD27_09755 298c4b1612d010dd63db496a06c484d8 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 16 132 8.0E-33 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMD27_09755 298c4b1612d010dd63db496a06c484d8 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 19.021 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMD27_07370 50014ce3f31052e526f8d04003efee63 222 Gene3D G3DSA:1.20.120.1760 8 213 8.6E-25 T 11-10-2018 AMD27_07370 50014ce3f31052e526f8d04003efee63 222 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 99 1.5E-12 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMD27_01730 de8d3237c2d2bc470c2398ebcf3893b9 293 Pfam PF00892 EamA-like transporter family 148 276 1.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_01730 de8d3237c2d2bc470c2398ebcf3893b9 293 SUPERFAMILY SSF103481 182 280 2.09E-10 T 11-10-2018 AMD27_05470 05045f69955910ce80d953c0a07c6351 98 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 3 95 2.5E-34 T 11-10-2018 IPR014056 Addiction module killer protein, predicted AMD27_05470 05045f69955910ce80d953c0a07c6351 98 PIRSF PIRSF028744 1 98 5.9E-35 T 11-10-2018 IPR014056 Addiction module killer protein, predicted AMD27_02210 c91be0b36b41f87f86b0b490c14b1bd8 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.5E-27 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_02210 c91be0b36b41f87f86b0b490c14b1bd8 78 SUPERFAMILY SSF143800 2 77 2.75E-30 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02210 c91be0b36b41f87f86b0b490c14b1bd8 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.225 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMD27_02210 c91be0b36b41f87f86b0b490c14b1bd8 78 Gene3D G3DSA:2.30.170.40 2 78 5.2E-33 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_02210 c91be0b36b41f87f86b0b490c14b1bd8 78 Pfam PF00830 Ribosomal L28 family 3 61 7.2E-27 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMD27_00470 84aeda35494bc3c3afc909fdffe6fb54 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 3.5E-13 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB AMD27_05395 1c6eda69aba369aea9907619f0bf853a 131 Pfam PF11342 Protein of unknown function (DUF3144) 20 105 1.3E-29 T 11-10-2018 IPR021490 Protein of unknown function DUF3144 AMD27_10960 28f3e242df7bee430d28747ef6118a15 285 Pfam PF15575 Immunity protein 49 63 253 1.8E-12 T 11-10-2018 IPR029074 Immunity protein 49 AMD27_09215 a5c02f2bb5feab4de1553cd54ef21856 504 Gene3D G3DSA:1.20.1730.10 24 502 6.8E-92 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily AMD27_09215 a5c02f2bb5feab4de1553cd54ef21856 504 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 491 9.1E-216 T 11-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 AMD27_09215 a5c02f2bb5feab4de1553cd54ef21856 504 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 438 2.9E-113 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_09215 a5c02f2bb5feab4de1553cd54ef21856 504 Pfam PF00474 Sodium:solute symporter family 35 438 1.1E-125 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMD27_09215 a5c02f2bb5feab4de1553cd54ef21856 504 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 420 440 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site AMD27_07360 c811a579611d3ae7faf4b44a9480d933 459 SUPERFAMILY SSF52799 306 455 1.41E-14 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_07360 c811a579611d3ae7faf4b44a9480d933 459 Pfam PF00782 Dual specificity phosphatase, catalytic domain 330 450 1.8E-13 T 11-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 AMD27_07360 c811a579611d3ae7faf4b44a9480d933 459 Gene3D G3DSA:3.90.190.10 314 456 1.7E-15 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_07360 c811a579611d3ae7faf4b44a9480d933 459 SMART SM00195 308 453 0.0035 T 11-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 AMD27_01885 34424f3ec4c7ed7d000b4208b94a8c33 83 Pfam PF04024 PspC domain 6 63 4.0E-21 T 11-10-2018 IPR007168 Phage shock protein, PspC, N-terminal AMD27_02025 1015e6163f97f0016d7e9f29f9cc0e19 120 Pfam PF07007 Lysozyme inhibitor LprI 23 101 1.2E-11 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMD27_02025 1015e6163f97f0016d7e9f29f9cc0e19 120 Gene3D G3DSA:1.20.1270.180 15 112 2.3E-8 T 11-10-2018 AMD27_08730 233945347c5e3752befbfbcafe9a2e6e 148 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 24 132 4.0E-31 T 11-10-2018 IPR008769 Poly granule associated AMD27_08730 233945347c5e3752befbfbcafe9a2e6e 148 Gene3D G3DSA:1.10.287.700 42 120 4.5E-5 T 11-10-2018 AMD27_04185 ea9afc0557d94349fbfab0bba0b92373 170 SUPERFAMILY SSF53474 7 145 1.56E-11 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04185 ea9afc0557d94349fbfab0bba0b92373 170 Gene3D G3DSA:3.40.50.1820 5 167 1.0E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_04185 ea9afc0557d94349fbfab0bba0b92373 170 Pfam PF05728 Uncharacterised protein family (UPF0227) 7 95 5.8E-10 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AMD27_12090 6a279a4f6cb03c43567c840bbba44625 129 PIRSF PIRSF016789 1 122 3.9E-28 T 11-10-2018 IPR007401 Protein of unknown function DUF454 AMD27_12090 6a279a4f6cb03c43567c840bbba44625 129 Pfam PF04304 Protein of unknown function (DUF454) 5 117 8.4E-34 T 11-10-2018 IPR007401 Protein of unknown function DUF454 AMD27_05125 befe8a38388261c1b75d2f7a6e09f14a 376 PIRSF PIRSF026508 6 374 8.2E-116 T 11-10-2018 IPR008863 Toxic anion resistance AMD27_05125 befe8a38388261c1b75d2f7a6e09f14a 376 Pfam PF05816 Toxic anion resistance protein (TelA) 43 364 6.5E-84 T 11-10-2018 IPR008863 Toxic anion resistance AMD27_00800 6c5687108c67d45317847c89a680409e 316 Gene3D G3DSA:3.40.50.1820 25 315 1.9E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_00800 6c5687108c67d45317847c89a680409e 316 SUPERFAMILY SSF53474 32 297 1.59E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_00800 6c5687108c67d45317847c89a680409e 316 Pfam PF12146 Serine aminopeptidase, S33 53 291 9.6E-17 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_00290 95a68b2b0913936b271bc507ff5bd452 380 Pfam PF00487 Fatty acid desaturase 74 341 7.9E-29 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMD27_16855 10fb2cbfb61136a1bbe6c038a7837c7c 375 Pfam PF05816 Toxic anion resistance protein (TelA) 40 363 3.2E-79 T 11-10-2018 IPR008863 Toxic anion resistance AMD27_16855 10fb2cbfb61136a1bbe6c038a7837c7c 375 PIRSF PIRSF026508 5 371 6.9E-106 T 11-10-2018 IPR008863 Toxic anion resistance AMD27_00390 2fa29e1abb091ac9a26c81ed3de44ec1 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 3 373 9.1E-157 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 AMD27_00390 2fa29e1abb091ac9a26c81ed3de44ec1 376 Gene3D G3DSA:3.40.50.2000 188 360 1.8E-148 T 11-10-2018 AMD27_00390 2fa29e1abb091ac9a26c81ed3de44ec1 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 373 4.3E-124 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMD27_00390 2fa29e1abb091ac9a26c81ed3de44ec1 376 SUPERFAMILY SSF53756 1 375 1.54E-136 T 11-10-2018 AMD27_00390 2fa29e1abb091ac9a26c81ed3de44ec1 376 Gene3D G3DSA:3.40.50.2000 3 371 1.8E-148 T 11-10-2018 AMD27_01090 022fdae5ec0d5f3f3e6ff459be0096c7 451 Gene3D G3DSA:1.20.1600.10 21 450 2.3E-94 T 11-10-2018 AMD27_01090 022fdae5ec0d5f3f3e6ff459be0096c7 451 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 448 7.5E-76 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 AMD27_01090 022fdae5ec0d5f3f3e6ff459be0096c7 451 Pfam PF02321 Outer membrane efflux protein 250 434 2.5E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_01090 022fdae5ec0d5f3f3e6ff459be0096c7 451 Pfam PF02321 Outer membrane efflux protein 24 225 4.2E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMD27_01090 022fdae5ec0d5f3f3e6ff459be0096c7 451 SUPERFAMILY SSF56954 2 437 2.49E-82 T 11-10-2018 AMD27_01440 41c3160f5ddb5e060b627c709fc530aa 307 Pfam PF00892 EamA-like transporter family 9 140 1.8E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_01440 41c3160f5ddb5e060b627c709fc530aa 307 Pfam PF00892 EamA-like transporter family 153 284 1.7E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_01440 41c3160f5ddb5e060b627c709fc530aa 307 SUPERFAMILY SSF103481 43 140 8.63E-11 T 11-10-2018 AMD27_09815 9dd3b153ef827c4953486f284b4f922b 211 SUPERFAMILY SSF47240 44 126 3.64E-17 T 11-10-2018 IPR009078 Ferritin-like superfamily AMD27_09815 9dd3b153ef827c4953486f284b4f922b 211 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 50 209 8.0E-43 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMD27_09815 9dd3b153ef827c4953486f284b4f922b 211 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 11 211 29.465 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMD27_17725 40f66da33fb076e5a08dfdca809e7b1f 133 Pfam PF00816 H-NS histone family 19 113 2.8E-7 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AMD27_17725 40f66da33fb076e5a08dfdca809e7b1f 133 SUPERFAMILY SSF81273 78 121 9.81E-5 T 11-10-2018 AMD27_01970 f79bf28e47bce78120d4609153cdcc1c 118 Pfam PF10947 Protein of unknown function (DUF2628) 26 96 4.9E-8 T 11-10-2018 IPR024399 Protein of unknown function DUF2628 AMD27_15900 bcd1d58e29029a565baefc6f81ecf349 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 12 146 1.5E-17 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMD27_15900 bcd1d58e29029a565baefc6f81ecf349 160 SUPERFAMILY SSF54534 13 149 2.36E-34 T 11-10-2018 AMD27_15900 bcd1d58e29029a565baefc6f81ecf349 160 Gene3D G3DSA:2.40.10.330 81 135 2.5E-37 T 11-10-2018 AMD27_15900 bcd1d58e29029a565baefc6f81ecf349 160 Gene3D G3DSA:3.10.50.40 22 147 2.5E-37 T 11-10-2018 AMD27_13110 ab9a8acacb07d092d1355c6b00cb973c 135 Pfam PF05926 Phage head completion protein (GPL) 66 125 2.1E-7 T 11-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 AMD27_11355 31cc51c050647a4522ad27b03faf0e10 168 Pfam PF01609 Transposase DDE domain 4 162 2.3E-21 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMD27_06430 e678fbed677d2c9460f2e67f541b21d0 305 SUPERFAMILY SSF48452 195 294 2.05E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_06430 e678fbed677d2c9460f2e67f541b21d0 305 Gene3D G3DSA:1.25.40.10 171 295 2.0E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_13195 5ab2999f98e25a94c604193b2431b1ca 410 Pfam PF10145 Phage-related minor tail protein 164 367 1.1E-24 T 11-10-2018 IPR010090 Phage tail tape measure protein AMD27_13195 5ab2999f98e25a94c604193b2431b1ca 410 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 122 407 3.4E-36 T 11-10-2018 IPR010090 Phage tail tape measure protein AMD27_09390 4d6442371e860ce1b132afc32d880647 416 Pfam PF14903 WG containing repeat 187 220 8.1E-6 T 11-10-2018 IPR032774 WG containing repeat AMD27_09390 4d6442371e860ce1b132afc32d880647 416 Pfam PF14903 WG containing repeat 222 242 0.13 T 11-10-2018 IPR032774 WG containing repeat AMD27_02240 9688ea0d5b71e9a8f69870dce3f12ac0 134 Gene3D G3DSA:3.30.420.270 61 130 1.2E-12 T 11-10-2018 AMD27_02240 9688ea0d5b71e9a8f69870dce3f12ac0 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 133 1.1E-28 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMD27_03975 fb46a61cf1057d8fc2c6dd53fbcf7cef 173 Gene3D G3DSA:2.60.120.10 42 173 3.3E-19 T 11-10-2018 IPR014710 RmlC-like jelly roll fold AMD27_03975 fb46a61cf1057d8fc2c6dd53fbcf7cef 173 SUPERFAMILY SSF51182 44 167 3.96E-23 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily AMD27_03975 fb46a61cf1057d8fc2c6dd53fbcf7cef 173 Pfam PF07883 Cupin domain 79 148 1.6E-10 T 11-10-2018 IPR013096 Cupin 2, conserved barrel AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 158 27.853 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 Pfam PF02590 Predicted SPOUT methyltransferase 1 157 1.8E-51 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 158 2.5E-52 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 SUPERFAMILY SSF75217 1 156 5.08E-51 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 PIRSF PIRSF004505 1 158 2.4E-51 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMD27_04750 1575b6e2d834418d54adf56677d42a9a 160 Gene3D G3DSA:3.40.1280.10 1 158 5.3E-53 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMD27_04955 bf4d3d40e47d0d25a1164758d8805400 414 Gene3D G3DSA:3.20.20.70 1 350 1.5E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_04955 bf4d3d40e47d0d25a1164758d8805400 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 340 6.6E-53 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMD27_04955 bf4d3d40e47d0d25a1164758d8805400 414 SUPERFAMILY SSF51395 1 349 2.23E-98 T 11-10-2018 AMD27_12820 b9dfdb129856063245d83af5fc91369d 161 PIRSF PIRSF030820 1 160 1.2E-33 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMD27_12820 b9dfdb129856063245d83af5fc91369d 161 Pfam PF06073 Bacterial protein of unknown function (DUF934) 52 155 2.2E-31 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMD27_04235 8dffd87ca6e67bda424badf646aba8f0 120 Gene3D G3DSA:3.40.960.10 16 119 1.0E-27 T 11-10-2018 AMD27_04235 8dffd87ca6e67bda424badf646aba8f0 120 SUPERFAMILY SSF52980 10 116 2.68E-17 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_04235 8dffd87ca6e67bda424badf646aba8f0 120 Pfam PF04480 Protein of unknown function (DUF559) 8 114 5.5E-34 T 11-10-2018 IPR007569 Protein of unknown function DUF559 AMD27_08955 1a4cb76678d221db962dd5db7ceac8f5 117 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 9 113 21.142 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMD27_08955 1a4cb76678d221db962dd5db7ceac8f5 117 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 9 112 2.7E-32 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMD27_02925 6285de69edc15062775695601185b808 607 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 14 355 4.4E-121 T 11-10-2018 IPR010839 Acyclic terpene utilisation AMD27_12990 df6e3da613482fc2c1f912e5ebf267cc 300 ProDom PD024016 LIPOPOLYSACCHARIDE BIOSYNTHESIS CORE RFAZ WAAZ 70 281 9.0E-5 T 11-10-2018 AMD27_02885 75b84ab382f3c02006535b107eb30279 299 PRINTS PR01805 VacJ lipoprotein signature 101 117 2.0E-17 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMD27_02885 75b84ab382f3c02006535b107eb30279 299 PRINTS PR01805 VacJ lipoprotein signature 187 204 2.0E-17 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMD27_02885 75b84ab382f3c02006535b107eb30279 299 PRINTS PR01805 VacJ lipoprotein signature 84 97 2.0E-17 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMD27_02885 75b84ab382f3c02006535b107eb30279 299 PRINTS PR01805 VacJ lipoprotein signature 152 169 2.0E-17 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMD27_02885 75b84ab382f3c02006535b107eb30279 299 Pfam PF04333 MlaA lipoprotein 83 273 2.9E-59 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMD27_13395 563216ef4bc747a946c9e19f30bf8e50 309 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 109 307 1.0E-15 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMD27_07280 15ba5a0240605edf2b4ae83a17847acc 294 Pfam PF01925 Sulfite exporter TauE/SafE 8 265 3.5E-49 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMD27_16105 07e93e00a81581f2a12f1d98132e8b15 397 Gene3D G3DSA:1.20.1250.20 12 391 3.2E-37 T 11-10-2018 AMD27_16105 07e93e00a81581f2a12f1d98132e8b15 397 SUPERFAMILY SSF103473 8 390 4.84E-50 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_16105 07e93e00a81581f2a12f1d98132e8b15 397 Pfam PF07690 Major Facilitator Superfamily 22 325 3.4E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_16145 f7e77e4e6a943d0c3c96fa7727a91fae 397 Pfam PF07690 Major Facilitator Superfamily 13 348 5.6E-29 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_16145 f7e77e4e6a943d0c3c96fa7727a91fae 397 SUPERFAMILY SSF103473 6 391 2.22E-44 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_16145 f7e77e4e6a943d0c3c96fa7727a91fae 397 Gene3D G3DSA:1.20.1250.20 4 192 2.4E-21 T 11-10-2018 AMD27_16145 f7e77e4e6a943d0c3c96fa7727a91fae 397 Gene3D G3DSA:1.20.1250.20 205 387 2.1E-12 T 11-10-2018 AMD27_11455 b58461b84ed8d2a0fb44987e603e0284 190 Pfam PF13430 Domain of unknown function (DUF4112) 19 118 2.1E-21 T 11-10-2018 IPR025187 Protein of unknown function DUF4112 AMD27_05305 4ac9319c3c5bf85bfea8d4013dfaaed9 209 SUPERFAMILY SSF109604 38 205 5.89E-22 T 11-10-2018 AMD27_05305 4ac9319c3c5bf85bfea8d4013dfaaed9 209 PIRSF PIRSF035170 2 209 5.6E-50 T 11-10-2018 IPR009218 Predicted HD phosphohydrolase AMD27_10400 4633d5c415ab9658a65ae7894ba6aded 304 Pfam PF01882 Protein of unknown function DUF58 200 275 1.4E-11 T 11-10-2018 IPR002881 Domain of unknown function DUF58 AMD27_11670 96b6198b5b589205171b288f4ade7bf0 299 Pfam PF04228 Putative neutral zinc metallopeptidase 1 295 6.2E-112 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMD27_12790 a3ec1c872d50da1f4bcdcf5383c69a75 484 Gene3D G3DSA:1.20.1740.10 6 476 9.7E-63 T 11-10-2018 AMD27_12790 a3ec1c872d50da1f4bcdcf5383c69a75 484 ProSitePatterns PS00218 Amino acid permeases signature. 40 71 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMD27_12790 a3ec1c872d50da1f4bcdcf5383c69a75 484 Pfam PF00324 Amino acid permease 15 467 2.3E-134 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMD27_12790 a3ec1c872d50da1f4bcdcf5383c69a75 484 PIRSF PIRSF006060 1 483 4.6E-82 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMD27_15455 2fc476adf60918e6ef3c050d8fc8bb10 165 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 3 152 8.2E-10 T 11-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AMD27_14900 d232489cdb2664e9a9b292f598e89dc6 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.5E-15 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_06990 fef4273d5541f2d581ed6bc856d7ff15 215 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 5 208 3.0E-43 T 11-10-2018 IPR011740 Protein of unknown function DUF2460 AMD27_06415 e2d80ff3189ec87755141e85da82503f 93 SUPERFAMILY SSF46689 45 90 1.02E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_06415 e2d80ff3189ec87755141e85da82503f 93 Pfam PF03811 InsA N-terminal domain 5 36 1.4E-8 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMD27_04195 95055a9f981dea0045d11fd524e0990e 485 Gene3D G3DSA:2.40.160.130 22 480 3.7E-156 T 11-10-2018 IPR038636 Capsule assembly protein Wzi superfamily AMD27_04195 95055a9f981dea0045d11fd524e0990e 485 Pfam PF14052 Capsule assembly protein Wzi 93 469 3.8E-106 T 11-10-2018 IPR026950 Capsule assembly protein Wzi AMD27_17865 5e1a5f8e2846ede6854e48f939bc47d3 210 Pfam PF15648 Restriction endonuclease fold toxin 5 109 188 1.7E-16 T 11-10-2018 IPR028904 Tox-REase-5 domain AMD27_06940 0e907f6368bd81be951d87e5e44d53d0 127 Pfam PF13262 Protein of unknown function (DUF4054) 17 105 1.2E-14 T 11-10-2018 IPR025127 Protein of unknown function DUF4054 AMD27_09320 7d6de9bd4810677840fa8f6d5d8d1ab8 207 PIRSF PIRSF006324 1 207 2.4E-40 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_09320 7d6de9bd4810677840fa8f6d5d8d1ab8 207 Pfam PF01810 LysE type translocator 13 205 2.1E-39 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_04135 230d5372c285a3675bddea901fc4f860 245 Gene3D G3DSA:3.40.50.300 13 244 4.7E-64 T 11-10-2018 AMD27_04135 230d5372c285a3675bddea901fc4f860 245 Pfam PF00005 ABC transporter 36 184 3.8E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMD27_04135 230d5372c285a3675bddea901fc4f860 245 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMD27_04135 230d5372c285a3675bddea901fc4f860 245 SMART SM00382 44 231 3.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain AMD27_04135 230d5372c285a3675bddea901fc4f860 245 SUPERFAMILY SSF52540 15 240 7.43E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMD27_08370 d85f31db2af029e2b587375dac34de1e 479 Pfam PF06074 Protein of unknown function (DUF935) 57 475 5.4E-60 T 11-10-2018 IPR009279 Protein of unknown function DUF935 AMD27_12875 26628b4f517830bf2f974b9361bfe3d1 481 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 3 447 3.9E-117 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 AMD27_04455 1124baed227be913e65250ab81b32283 161 Pfam PF06945 Protein of unknown function (DUF1289) 11 55 5.2E-14 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 AMD27_09425 07f2064d99f5ae38fcbc7f5231e4d56d 351 Gene3D G3DSA:3.90.226.10 11 348 8.8E-98 T 11-10-2018 AMD27_09425 07f2064d99f5ae38fcbc7f5231e4d56d 351 Pfam PF16113 Enoyl-CoA hydratase/isomerase 24 337 2.4E-97 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMD27_09425 07f2064d99f5ae38fcbc7f5231e4d56d 351 SUPERFAMILY SSF52096 15 337 6.89E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMD27_08390 5685c34dd656c0dda718b7c5d7e07d5f 146 Gene3D G3DSA:3.40.960.10 32 135 1.7E-5 T 11-10-2018 AMD27_01535 008cd279438cada41e3ae40499fc0217 186 Pfam PF04536 TPM domain 40 161 3.5E-14 T 11-10-2018 IPR007621 TPM domain AMD27_01535 008cd279438cada41e3ae40499fc0217 186 Gene3D G3DSA:3.10.310.50 34 182 9.4E-44 T 11-10-2018 AMD27_00810 ede2b77704d2fa34ffee68e9c48f907e 179 Pfam PF10881 Protein of unknown function (DUF2726) 36 144 3.4E-10 T 11-10-2018 IPR024402 Domain of unknown function DUF2726 AMD27_06975 0496a6e07c279a928abbcb542c9749e5 158 ProDom PD057827 ZN-RIBBON HI1126 PM0127 TRANSMEMBRANE ORF196EGC129 MEMBRANE SO2423 GLL0157 1 30 0.002 T 11-10-2018 AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 24 358 3.2E-138 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 203 214 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 SUPERFAMILY SSF46548 149 266 3.35E-16 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 17 325 44.935 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 Pfam PF13484 4Fe-4S double cluster binding domain 202 266 2.2E-19 T 11-10-2018 AMD27_09405 834a776fe5eca7d44b4d69b4375c439d 363 Pfam PF08331 Domain of unknown function (DUF1730) 72 150 7.8E-23 T 11-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AMD27_14990 87af3d388cb4d8841b00f7eb2d252cee 432 Gene3D G3DSA:1.20.1250.20 30 410 6.4E-45 T 11-10-2018 AMD27_14990 87af3d388cb4d8841b00f7eb2d252cee 432 Pfam PF07690 Major Facilitator Superfamily 243 421 3.5E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_14990 87af3d388cb4d8841b00f7eb2d252cee 432 Pfam PF07690 Major Facilitator Superfamily 39 218 3.2E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_14990 87af3d388cb4d8841b00f7eb2d252cee 432 SUPERFAMILY SSF103473 27 412 5.1E-53 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_05115 c5b193be870e5bd80e8ab4f29652cf8b 803 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 778 799 1.4E-4 T 11-10-2018 IPR020008 GlyGly-CTERM domain AMD27_05115 c5b193be870e5bd80e8ab4f29652cf8b 803 TIGRFAM TIGR04214 CSLREA_Nterm: CSLREA domain 27 52 1.1E-11 T 11-10-2018 IPR026457 CSLREA domain AMD27_05115 c5b193be870e5bd80e8ab4f29652cf8b 803 SUPERFAMILY SSF51126 12 323 2.79E-13 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor AMD27_02330 6b67d3b7ff2801e54c9e695fabe6c4a6 197 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 195 2.1E-79 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMD27_02330 6b67d3b7ff2801e54c9e695fabe6c4a6 197 SUPERFAMILY SSF53335 11 172 2.26E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_02330 6b67d3b7ff2801e54c9e695fabe6c4a6 197 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 7.4E-76 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMD27_02330 6b67d3b7ff2801e54c9e695fabe6c4a6 197 Gene3D G3DSA:3.40.50.150 2 174 9.6E-26 T 11-10-2018 AMD27_13025 b197638512737a59ab9ddf104cd414c6 292 Pfam PF14305 TupA-like ATPgrasp 45 290 6.5E-56 T 11-10-2018 IPR029465 TupA-like ATPgrasp protein AMD27_15450 2d54f2ef974999bfc48d59d3b2c1f5c9 443 SUPERFAMILY SSF53474 156 373 4.29E-20 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_15450 2d54f2ef974999bfc48d59d3b2c1f5c9 443 Pfam PF07819 PGAP1-like protein 154 375 9.2E-32 T 11-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 AMD27_15450 2d54f2ef974999bfc48d59d3b2c1f5c9 443 Gene3D G3DSA:3.40.50.1820 155 416 5.1E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_12425 b5429a5221244006c161272cf6a253c6 74 SUPERFAMILY SSF55331 2 74 2.49E-8 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_12425 b5429a5221244006c161272cf6a253c6 74 Gene3D G3DSA:3.30.429.10 2 65 4.5E-16 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 Gene3D G3DSA:1.20.81.30 61 176 6.8E-31 T 11-10-2018 AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 Pfam PF00482 Type II secretion system (T2SS), protein F 279 400 1.1E-28 T 11-10-2018 IPR018076 Type II secretion system F domain AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 197 2.3E-31 T 11-10-2018 IPR018076 Type II secretion system F domain AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 Gene3D G3DSA:1.20.81.30 261 371 2.1E-27 T 11-10-2018 AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 169 197 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 8.0E-18 T 11-10-2018 IPR003004 GspF/PilC family AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 389 408 8.0E-18 T 11-10-2018 IPR003004 GspF/PilC family AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 8.0E-18 T 11-10-2018 IPR003004 GspF/PilC family AMD27_01455 92814c0bcd63894ca593e32f044f4419 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 373 387 8.0E-18 T 11-10-2018 IPR003004 GspF/PilC family AMD27_17700 3f5328ad95638557b90842dba4758f3a 307 Pfam PF08401 Domain of unknown function (DUF1738) 14 107 1.5E-22 T 11-10-2018 IPR013610 Domain of unknown function DUF1738 AMD27_03040 e545553505ca8b2c4650bca577d2d237 268 Pfam PF01553 Acyltransferase 69 184 6.6E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_03040 e545553505ca8b2c4650bca577d2d237 268 SUPERFAMILY SSF69593 51 261 2.22E-21 T 11-10-2018 AMD27_03040 e545553505ca8b2c4650bca577d2d237 268 SMART SM00563 80 191 5.1E-16 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMD27_09275 d13271855ec892d4d2b9955760996b2c 392 Gene3D G3DSA:3.30.450.40 22 204 1.3E-36 T 11-10-2018 IPR029016 GAF-like domain superfamily AMD27_09275 d13271855ec892d4d2b9955760996b2c 392 SUPERFAMILY SSF46894 220 282 3.4E-5 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMD27_02380 4826577724c2eaf5696a853785a2c2ab 250 Pfam PF11008 Protein of unknown function (DUF2846) 59 167 2.5E-21 T 11-10-2018 IPR022548 Domain of unknown function DUF2846 AMD27_09185 3246a5175bac63bd687c507f86118a42 178 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 1.4E-10 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal AMD27_09185 3246a5175bac63bd687c507f86118a42 178 Gene3D G3DSA:1.10.10.10 1 86 4.0E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMD27_09185 3246a5175bac63bd687c507f86118a42 178 SUPERFAMILY SSF46785 3 176 2.57E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMD27_09185 3246a5175bac63bd687c507f86118a42 178 Pfam PF10400 Virulence activator alpha C-term 91 174 3.2E-18 T 11-10-2018 IPR018309 Transcription regulator PadR, C-terminal AMD27_09200 b2590a53b768913e07f3cc856c46cb3c 233 Pfam PF02146 Sir2 family 9 182 2.1E-46 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 AMD27_09200 b2590a53b768913e07f3cc856c46cb3c 233 Gene3D G3DSA:3.30.1600.10 18 154 6.8E-63 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily AMD27_09200 b2590a53b768913e07f3cc856c46cb3c 233 Gene3D G3DSA:3.40.50.1220 5 199 6.8E-63 T 11-10-2018 AMD27_09200 b2590a53b768913e07f3cc856c46cb3c 233 SUPERFAMILY SSF52467 2 229 3.6E-62 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMD27_11725 946f2e46c5186fa8c5a6217b5194df3d 446 Pfam PF03600 Citrate transporter 13 387 8.2E-52 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMD27_11725 946f2e46c5186fa8c5a6217b5194df3d 446 TIGRFAM TIGR00784 citMHS: citrate transporter 1 439 1.2E-174 T 11-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 AMD27_03025 eb1ea7db9e99400e5c917985808f32ac 224 Pfam PF04172 LrgB-like family 11 218 7.3E-49 T 11-10-2018 IPR007300 CidB/LrgB family AMD27_13410 db88dd5a12978b709f6bccfccdd4c987 184 Pfam PF04279 Intracellular septation protein A 24 173 1.3E-7 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMD27_00485 71363113581e1bcccc89e96bffba1b17 215 Pfam PF09335 SNARE associated Golgi protein 45 171 6.6E-23 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMD27_08490 669feb41c14371009aa1690751494764 259 Gene3D G3DSA:2.10.109.10 127 258 4.6E-35 T 11-10-2018 AMD27_08490 669feb41c14371009aa1690751494764 259 SUPERFAMILY SSF51306 129 257 1.23E-20 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMD27_08490 669feb41c14371009aa1690751494764 259 Gene3D G3DSA:1.10.260.40 45 114 9.8E-9 T 11-10-2018 AMD27_08490 669feb41c14371009aa1690751494764 259 Pfam PF00717 Peptidase S24-like 171 236 2.8E-10 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMD27_07725 750bb4d2bcf4fa96bb0598fb4a2c83ed 246 Pfam PF00535 Glycosyl transferase family 2 5 184 3.3E-10 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMD27_07725 750bb4d2bcf4fa96bb0598fb4a2c83ed 246 SUPERFAMILY SSF53448 3 227 1.25E-23 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_14950 ef89de37cfdb2f81b5ffc9ee7e9a18fb 359 Pfam PF04332 Protein of unknown function (DUF475) 54 356 1.3E-113 T 11-10-2018 IPR007427 Protein of unknown function DUF475 AMD27_07050 3fe9b46a790f5346959a9cfa04bd4455 176 Pfam PF05488 PAAR motif 8 78 3.6E-15 T 11-10-2018 IPR008727 PAAR motif AMD27_08555 78f02e877f6658c45858ce8954fd4bc7 116 SUPERFAMILY SSF75169 1 86 1.77E-6 T 11-10-2018 IPR027396 DsrEFH-like AMD27_08555 78f02e877f6658c45858ce8954fd4bc7 116 Gene3D G3DSA:3.40.1260.10 1 115 3.0E-13 T 11-10-2018 IPR027396 DsrEFH-like AMD27_07550 b2587b52c273b0bb5c179a3a6ff2406d 109 Gene3D G3DSA:2.102.10.10 1 108 3.8E-18 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_07550 b2587b52c273b0bb5c179a3a6ff2406d 109 SUPERFAMILY SSF50022 3 105 4.84E-21 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMD27_07550 b2587b52c273b0bb5c179a3a6ff2406d 109 Pfam PF00355 Rieske [2Fe-2S] domain 3 88 3.1E-12 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMD27_09620 04e848cb9fc9610345d47c4cd338e3e3 120 TIGRFAM TIGR01707 gspI: type II secretion system protein I 1 93 3.6E-12 T 11-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 AMD27_09620 04e848cb9fc9610345d47c4cd338e3e3 120 Pfam PF02501 Type II secretion system (T2SS), protein I 34 92 2.3E-11 T 11-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 AMD27_09620 04e848cb9fc9610345d47c4cd338e3e3 120 Gene3D G3DSA:3.30.1300.30 25 110 7.7E-12 T 11-10-2018 AMD27_09620 04e848cb9fc9610345d47c4cd338e3e3 120 SUPERFAMILY SSF54523 34 97 3.3E-15 T 11-10-2018 AMD27_06625 368d0482c7fe32826866ff473b1287d5 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 19 92 1.3E-16 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMD27_06625 368d0482c7fe32826866ff473b1287d5 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 108 2.8E-35 T 11-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AMD27_10920 62e1d9bb83129fcdceb52b612c5f8710 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 213 3.7E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMD27_10920 62e1d9bb83129fcdceb52b612c5f8710 219 Gene3D G3DSA:1.10.3720.10 1 215 9.2E-54 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_10920 62e1d9bb83129fcdceb52b612c5f8710 219 SUPERFAMILY SSF161098 11 213 4.71E-43 T 11-10-2018 IPR035906 MetI-like superfamily AMD27_10920 62e1d9bb83129fcdceb52b612c5f8710 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 107 4.3E-30 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMD27_07130 7291e90251a86a0e7adf97894fcf1483 139 Pfam PF05232 Chlorhexidine efflux transporter 70 131 9.3E-21 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter AMD27_07130 7291e90251a86a0e7adf97894fcf1483 139 Pfam PF05232 Chlorhexidine efflux transporter 4 64 1.2E-17 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter AMD27_10730 4570d0e2f53da3d3c6016c32ab88751b 151 Pfam PF06127 Protein of unknown function (DUF962) 1 135 3.2E-21 T 11-10-2018 IPR009305 Protein of unknown function DUF962 AMD27_16065 e6931db88c3d0032e64db6b936b11664 114 PIRSF PIRSF021239 1 114 3.4E-46 T 11-10-2018 IPR007437 Protein of unknown function DUF486 AMD27_16065 e6931db88c3d0032e64db6b936b11664 114 Pfam PF04342 Putative member of DMT superfamily (DUF486) 6 111 4.8E-40 T 11-10-2018 IPR007437 Protein of unknown function DUF486 AMD27_06700 9920c6bc0483df96d4058f3e76738866 200 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 7 186 5.0E-6 T 11-10-2018 IPR007296 Domain of unknown function DUF403 AMD27_02825 6ef819fe5ba35edf5ed8daa1bb684ef4 182 Pfam PF02325 YGGT family 108 178 5.7E-17 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 AMD27_02825 6ef819fe5ba35edf5ed8daa1bb684ef4 182 Pfam PF02325 YGGT family 11 78 5.0E-6 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 AMD27_04275 808844742d6a0325eefe46003d5317cb 118 SUPERFAMILY SSF117782 1 104 2.35E-36 T 11-10-2018 IPR035439 UPF0145 domain superfamily AMD27_04275 808844742d6a0325eefe46003d5317cb 118 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 25.032 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMD27_04275 808844742d6a0325eefe46003d5317cb 118 Gene3D G3DSA:3.30.110.70 2 109 1.0E-32 T 11-10-2018 AMD27_04275 808844742d6a0325eefe46003d5317cb 118 Pfam PF01906 Putative heavy-metal-binding 1 103 5.2E-38 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 SMART SM00671 55 90 3.6E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 SMART SM00671 91 126 9.6E-9 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 Gene3D G3DSA:1.25.40.10 17 197 7.3E-36 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 SUPERFAMILY SSF81901 45 154 3.66E-26 T 11-10-2018 AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 Pfam PF08238 Sel1 repeat 55 89 4.8E-6 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 Pfam PF08238 Sel1 repeat 140 154 93.0 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_02325 9ffc1c64be540c5ed7e25a2efaba4090 197 Pfam PF08238 Sel1 repeat 91 126 7.0E-8 T 11-10-2018 IPR006597 Sel1-like repeat AMD27_10195 e7fd6ee8050a7b0395882388ace93f10 411 SUPERFAMILY SSF51556 53 362 9.64E-69 T 11-10-2018 IPR032466 Metal-dependent hydrolase AMD27_10195 e7fd6ee8050a7b0395882388ace93f10 411 SUPERFAMILY SSF51338 6 409 2.47E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_10195 e7fd6ee8050a7b0395882388ace93f10 411 Gene3D G3DSA:2.30.40.10 10 409 1.3E-77 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMD27_10195 e7fd6ee8050a7b0395882388ace93f10 411 Gene3D G3DSA:3.20.20.140 53 366 1.3E-77 T 11-10-2018 AMD27_11900 d3381541ffc6e50a09d03f90ffaa5941 521 SMART SM00901 231 329 5.5E-26 T 11-10-2018 IPR014966 FRG domain AMD27_11900 d3381541ffc6e50a09d03f90ffaa5941 521 Pfam PF08867 FRG domain 234 326 2.8E-19 T 11-10-2018 IPR014966 FRG domain AMD27_00490 703856020efdb174a295ccc29c1ac98a 138 Pfam PF07681 DoxX 22 100 5.2E-20 T 11-10-2018 IPR032808 DoxX family AMD27_06015 ba5892c25e035f05e356ad01952001b2 230 Pfam PF01988 VIT family 18 225 1.0E-52 T 11-10-2018 IPR008217 Ccc1 family AMD27_03700 1af466deebac3c8c12ca204c57723265 160 Pfam PF02293 AmiS/UreI family transporter 1 158 2.5E-45 T 11-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 AMD27_03700 1af466deebac3c8c12ca204c57723265 160 Gene3D G3DSA:1.25.40.600 1 160 4.5E-42 T 11-10-2018 IPR038523 AmiS/UreI transporter superfamily AMD27_02440 e18567513ebaafd84dca3880a0c514f7 298 Gene3D G3DSA:3.40.50.150 31 280 3.8E-20 T 11-10-2018 AMD27_02440 e18567513ebaafd84dca3880a0c514f7 298 Pfam PF04072 Leucine carboxyl methyltransferase 59 182 7.4E-10 T 11-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 AMD27_02440 e18567513ebaafd84dca3880a0c514f7 298 SUPERFAMILY SSF53335 60 256 7.53E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMD27_17500 345c59c1be73811055d14858f438074d 213 Pfam PF05309 TraE protein 22 179 9.0E-25 T 11-10-2018 IPR007973 Pilus assembly TraE GO:0000746 AMD27_05610 ed8aa8844a9a40e4316994ecab92d641 325 Gene3D G3DSA:3.20.20.70 1 324 3.4E-119 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMD27_05610 ed8aa8844a9a40e4316994ecab92d641 325 SUPERFAMILY SSF51412 2 318 3.27E-65 T 11-10-2018 AMD27_05610 ed8aa8844a9a40e4316994ecab92d641 325 Pfam PF03060 Nitronate monooxygenase 5 310 2.5E-63 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMD27_02530 c75984236e386ad92ff2556fd94bf807 191 Pfam PF02342 TerD domain 1 187 2.5E-88 T 11-10-2018 IPR003325 TerD domain AMD27_02530 c75984236e386ad92ff2556fd94bf807 191 Gene3D G3DSA:2.60.60.30 19 186 6.7E-77 T 11-10-2018 AMD27_12645 abf85ed967756a1b5a31faab6cdd99e3 117 Pfam PF07179 SseB protein N-terminal domain 12 109 1.7E-16 T 11-10-2018 IPR009839 SseB protein N-terminal domain AMD27_09565 14f352df415f3b1b52ddc087ff2f271f 121 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 87 4.5E-16 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AMD27_16920 471b345e434b6d9fa35d045b8242db5f 337 Pfam PF03787 RAMP superfamily 30 279 6.0E-7 T 11-10-2018 IPR005537 CRISPR type III-associated RAMP protein AMD27_16090 cb9de396a97b6032b1cabc60c47fdbdd 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 43 92 1.0E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_08305 d12f7b833efa73c0227fdd2a97cd7956 59 Pfam PF09926 Uncharacterized small protein (DUF2158) 6 45 1.1E-11 T 11-10-2018 IPR019226 Protein of unknown function DUF2158 AMD27_11675 1d1561f1351f927c7855d9251fc29d76 308 Pfam PF05661 Protein of unknown function (DUF808) 4 294 1.7E-117 T 11-10-2018 IPR008526 Inner membrane protein YedI AMD27_11675 1d1561f1351f927c7855d9251fc29d76 308 PIRSF PIRSF016660 1 306 3.6E-128 T 11-10-2018 IPR008526 Inner membrane protein YedI AMD27_05735 92f33601975b9250266fb2f5e053da8b 104 SUPERFAMILY SSF102705 2 100 1.61E-23 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily AMD27_05735 92f33601975b9250266fb2f5e053da8b 104 Gene3D G3DSA:3.30.70.120 1 103 8.9E-40 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 SUPERFAMILY SSF54506 2 281 6.94E-63 T 11-10-2018 AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 232 1.1E-27 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 Pfam PF02567 Phenazine biosynthesis-like protein 6 275 4.7E-41 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 Gene3D G3DSA:3.10.310.10 3 273 5.2E-73 T 11-10-2018 AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 Gene3D G3DSA:3.10.310.10 117 269 5.2E-73 T 11-10-2018 AMD27_06565 895228b19afe96ac1fd807b05945cf3e 281 PIRSF PIRSF016184 1 281 1.2E-39 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMD27_03750 5f313b6ef86863c4d838e9cd27964586 508 Pfam PF07690 Major Facilitator Superfamily 22 416 4.5E-53 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMD27_03750 5f313b6ef86863c4d838e9cd27964586 508 Gene3D G3DSA:1.20.1720.10 19 254 2.2E-44 T 11-10-2018 AMD27_03750 5f313b6ef86863c4d838e9cd27964586 508 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 493 2.9E-135 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMD27_03750 5f313b6ef86863c4d838e9cd27964586 508 SUPERFAMILY SSF103473 16 498 2.22E-68 T 11-10-2018 IPR036259 MFS transporter superfamily AMD27_05045 62ff6d8c27e60d94f6bc8dec3dd32d33 294 Pfam PF13737 Transposase DDE domain 1 109 1.2E-42 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_11730 5118674092087ed907f4d07d8fe6c8a4 315 Pfam PF13737 Transposase DDE domain 22 130 8.4E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_13695 1a1c80059725ae8eb714cf60914da2a7 111 Pfam PF04273 Putative phosphatase (DUF442) 2 106 9.4E-28 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMD27_13695 1a1c80059725ae8eb714cf60914da2a7 111 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 105 3.2E-25 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMD27_13695 1a1c80059725ae8eb714cf60914da2a7 111 Gene3D G3DSA:3.90.190.10 1 110 5.5E-30 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMD27_12100 af09c510a17cdd09ded0818a212d6fdb 49 Pfam PF08085 Entericidin EcnA/B family 19 39 2.7E-9 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AMD27_01325 4fa53f1cb2d73c6af3bc497406d59fe6 367 Gene3D G3DSA:3.40.390.50 159 238 4.8E-5 T 11-10-2018 AMD27_01325 4fa53f1cb2d73c6af3bc497406d59fe6 367 Pfam PF06114 IrrE N-terminal-like domain 162 275 8.6E-20 T 11-10-2018 IPR010359 IrrE N-terminal-like domain AMD27_00385 cbebdd444631e52d4a5d453bcdc2a49f 412 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 330 409 2.5E-8 T 11-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMD27_00385 cbebdd444631e52d4a5d453bcdc2a49f 412 Pfam PF01943 Polysaccharide biosynthesis protein 10 275 1.1E-50 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AMD27_15170 1dec82a216f1c1e179a0d83d1f50d3f0 156 Pfam PF13359 DDE superfamily endonuclease 8 134 1.4E-17 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_03640 d5f7b7084d97dbf8b637740c945de87c 355 SUPERFAMILY SSF161070 35 351 2.88E-12 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 AMD27_03360 a70d2f782eb2d356464c3d8ae884d497 277 Gene3D G3DSA:3.90.70.10 49 208 1.3E-30 T 11-10-2018 AMD27_03360 a70d2f782eb2d356464c3d8ae884d497 277 Pfam PF03412 Peptidase C39 family 63 197 2.7E-16 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMD27_15775 c826cca6e4fea97fd458c81d596b0570 245 Pfam PF01738 Dienelactone hydrolase family 22 243 1.6E-43 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMD27_15775 c826cca6e4fea97fd458c81d596b0570 245 SUPERFAMILY SSF53474 6 244 1.09E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_15775 c826cca6e4fea97fd458c81d596b0570 245 Gene3D G3DSA:3.40.50.1820 1 245 2.9E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_05050 fba80da72053097b47810de3e36811b8 236 SUPERFAMILY SSF69322 18 181 8.5E-5 T 11-10-2018 AMD27_00435 b64a0620897d0fdb8c4d937bf7a4c600 291 Gene3D G3DSA:3.90.550.10 1 290 3.2E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00435 b64a0620897d0fdb8c4d937bf7a4c600 291 SUPERFAMILY SSF53448 3 279 8.79E-55 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_00435 b64a0620897d0fdb8c4d937bf7a4c600 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 267 1.0E-100 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AMD27_00435 b64a0620897d0fdb8c4d937bf7a4c600 291 Pfam PF00483 Nucleotidyl transferase 5 266 8.8E-21 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMD27_16080 58b5768a5c55552c2253aa1afeb31b2b 124 SUPERFAMILY SSF46689 3 109 1.02E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMD27_16080 58b5768a5c55552c2253aa1afeb31b2b 124 Pfam PF01710 Transposase 5 121 4.3E-5 T 11-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 AMD27_15990 7eebb56a8680fa6f9a4d9cb234e915ac 455 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 451 7.7E-126 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMD27_15990 7eebb56a8680fa6f9a4d9cb234e915ac 455 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 453 2.5E-142 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMD27_09065 7ac795f0179332d88f8216bb99d1cffb 184 Pfam PF04970 Lecithin retinol acyltransferase 9 109 6.5E-17 T 11-10-2018 IPR007053 LRAT-like domain AMD27_07340 6e3425584bb3ae5c3da681e3e49c537c 177 Pfam PF01464 Transglycosylase SLT domain 57 161 2.5E-17 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 AMD27_07340 6e3425584bb3ae5c3da681e3e49c537c 177 SUPERFAMILY SSF53955 41 174 2.44E-28 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily AMD27_07340 6e3425584bb3ae5c3da681e3e49c537c 177 Gene3D G3DSA:1.10.530.10 39 176 3.1E-26 T 11-10-2018 AMD27_04690 ebe2bd17f3a837c2e559ea4e904195aa 3880 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3797 3877 2.4E-12 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass AMD27_10815 9acaf34b374937426629517fcbe8ae4d 129 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 1.9E-22 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMD27_10815 9acaf34b374937426629517fcbe8ae4d 129 SUPERFAMILY SSF69118 4 122 1.96E-34 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMD27_10815 9acaf34b374937426629517fcbe8ae4d 129 Gene3D G3DSA:1.20.1290.10 3 128 6.6E-38 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMD27_14275 738d4bc0166f78c3aaecfc2f4ef6b34c 288 Pfam PF13557 Putative MetA-pathway of phenol degradation 54 284 5.1E-33 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative AMD27_13810 5d747a72f85093fda1849743a540a13b 100 SUPERFAMILY SSF54909 7 99 6.44E-16 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel AMD27_13810 5d747a72f85093fda1849743a540a13b 100 Gene3D G3DSA:3.30.70.100 5 95 3.8E-22 T 11-10-2018 AMD27_09030 1c16fcf8a7bf2d427d63cf3a455eb2ee 450 Pfam PF02386 Cation transport protein 39 433 1.3E-53 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMD27_04045 f9135bf372fd7dd3dbdb9c5be9db76d0 193 Pfam PF04973 Nicotinamide mononucleotide transporter 3 181 9.0E-42 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AMD27_04045 f9135bf372fd7dd3dbdb9c5be9db76d0 193 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 4 182 9.2E-23 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AMD27_08775 bad42c35c3b9f0910e88ef4c25544897 477 Gene3D G3DSA:3.30.70.1230 218 413 9.1E-63 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_08775 bad42c35c3b9f0910e88ef4c25544897 477 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 224 406 2.9E-34 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMD27_08775 bad42c35c3b9f0910e88ef4c25544897 477 SUPERFAMILY SSF55073 223 407 1.73E-53 T 11-10-2018 IPR029787 Nucleotide cyclase AMD27_08775 bad42c35c3b9f0910e88ef4c25544897 477 SMART SM00044 187 388 4.0E-19 T 11-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMD27_06295 208d5af790e6a006497f83950e78e294 88 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 20 69 1.0E-8 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA AMD27_08640 678b86ff9f3ff76e12f71896c1a75df4 156 Pfam PF13359 DDE superfamily endonuclease 8 137 2.4E-18 T 11-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMD27_11925 493f479ebe8c29ec2220b408885703cb 191 Pfam PF02417 Chromate transporter 18 174 1.8E-31 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMD27_02545 b087dad2cf30c6fa4cbe8acb410b0791 239 Gene3D G3DSA:3.60.160.10 3 235 9.1E-62 T 11-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily AMD27_02545 b087dad2cf30c6fa4cbe8acb410b0791 239 Pfam PF01987 Mitochondrial biogenesis AIM24 4 218 6.0E-49 T 11-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 AMD27_02545 b087dad2cf30c6fa4cbe8acb410b0791 239 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 10 231 9.1E-35 T 11-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 AMD27_02545 b087dad2cf30c6fa4cbe8acb410b0791 239 SUPERFAMILY SSF51219 2 237 5.23E-51 T 11-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily AMD27_03460 8c2beb6d4a2daa90162e7e2044166594 220 Pfam PF08378 Nuclease-related domain 37 150 5.7E-32 T 11-10-2018 IPR011528 Nuclease-related domain, NERD AMD27_13190 1f1767245e367ecf680b7ae91c69abc2 117 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 24 103 1.5E-7 T 11-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative AMD27_02400 133c832138ca07f7ec6d9f3efdd7027e 188 Pfam PF07799 Protein of unknown function (DUF1643) 32 145 4.1E-8 T 11-10-2018 IPR012441 Protein of unknown function DUF1643 AMD27_07085 7be55eae0dcd2b1c4835ca53483181ef 287 Pfam PF12146 Serine aminopeptidase, S33 28 244 3.3E-10 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 AMD27_07085 7be55eae0dcd2b1c4835ca53483181ef 287 PIRSF PIRSF037442 2 281 9.6E-71 T 11-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 AMD27_07085 7be55eae0dcd2b1c4835ca53483181ef 287 SUPERFAMILY SSF53474 4 268 6.87E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07085 7be55eae0dcd2b1c4835ca53483181ef 287 Gene3D G3DSA:3.40.50.1820 1 275 3.2E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold AMD27_07790 8f331c23c17beae144873150f8861aef 171 Gene3D G3DSA:3.90.1170.40 2 141 1.5E-44 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMD27_07790 8f331c23c17beae144873150f8861aef 171 Pfam PF02391 MoaE protein 13 124 5.5E-34 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMD27_07790 8f331c23c17beae144873150f8861aef 171 SUPERFAMILY SSF54690 17 143 7.59E-41 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMD27_13000 1c117af2e08addaf01b7e90cd5c149aa 253 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 4 182 3.7E-25 T 11-10-2018 IPR002654 Glycosyl transferase, family 25 AMD27_06630 35ebfc4829140b57fdcabc0b01b743cd 205 Gene3D G3DSA:1.20.120.80 17 205 1.6E-53 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06630 35ebfc4829140b57fdcabc0b01b743cd 205 SUPERFAMILY SSF81452 7 203 1.57E-56 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06630 35ebfc4829140b57fdcabc0b01b743cd 205 Pfam PF00510 Cytochrome c oxidase subunit III 13 203 4.7E-14 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMD27_06630 35ebfc4829140b57fdcabc0b01b743cd 205 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 23 205 2.5E-81 T 11-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AMD27_09175 69dbbd051fb78787a70ac9c42fade41d 135 SUPERFAMILY SSF54427 5 114 4.5E-21 T 11-10-2018 IPR032710 NTF2-like domain superfamily AMD27_09175 69dbbd051fb78787a70ac9c42fade41d 135 Pfam PF12680 SnoaL-like domain 11 106 1.0E-6 T 11-10-2018 IPR037401 SnoaL-like domain AMD27_09175 69dbbd051fb78787a70ac9c42fade41d 135 Gene3D G3DSA:3.10.450.50 3 133 3.1E-41 T 11-10-2018 AMD27_07375 73b47f635136c08b27892f5e0cb2e54f 154 Pfam PF03400 IS1 transposase 15 139 3.3E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_05350 73b47f635136c08b27892f5e0cb2e54f 154 Pfam PF03400 IS1 transposase 15 139 3.3E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_03800 73b47f635136c08b27892f5e0cb2e54f 154 Pfam PF03400 IS1 transposase 15 139 3.3E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_05455 73b47f635136c08b27892f5e0cb2e54f 154 Pfam PF03400 IS1 transposase 15 139 3.3E-23 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_15585 795904c60f055741f89212cdb8d8c771 159 Gene3D G3DSA:3.30.1050.10 28 135 9.8E-6 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMD27_07470 caa81c14e3e22079462aa8c06a57ddc6 129 Pfam PF11042 Protein of unknown function (DUF2750) 20 114 8.3E-13 T 11-10-2018 IPR021284 Protein of unknown function DUF2750 AMD27_14850 963362057ffdc88cd860131d574eaf5b 199 Pfam PF04116 Fatty acid hydroxylase superfamily 5 154 6.0E-7 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AMD27_02290 0a0b854fed2440be67258cc4db229645 259 Pfam PF05742 Transport and Golgi organisation 2 1 240 4.8E-53 T 11-10-2018 IPR008551 Transport and Golgi organisation protein 2 AMD27_01615 0ea236b701f26ca70107099050980cb4 1285 Pfam PF05567 Neisseria PilC beta-propeller domain 717 1052 4.2E-13 T 11-10-2018 IPR008707 PilC beta-propeller domain AMD27_01615 0ea236b701f26ca70107099050980cb4 1285 SUPERFAMILY SSF50998 724 1003 1.05E-6 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMD27_15730 7a60f6cf81f8593271aba72ec8224e2a 425 Pfam PF11876 Protein of unknown function (DUF3396) 120 323 1.5E-20 T 11-10-2018 IPR021815 Protein of unknown function DUF3396 AMD27_14575 f954a543f0524bc16187bdcc3ded8b16 174 PIRSF PIRSF019239 8 171 1.4E-41 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMD27_14575 f954a543f0524bc16187bdcc3ded8b16 174 Pfam PF01899 Na+/H+ ion antiporter subunit 19 163 8.7E-34 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMD27_02295 a2da1cc4370dd7d5d4ed041078554813 747 Pfam PF05787 Bacterial protein of unknown function (DUF839) 79 693 4.5E-135 T 11-10-2018 IPR008557 Protein of unknown function DUF839 AMD27_02295 a2da1cc4370dd7d5d4ed041078554813 747 SUPERFAMILY SSF63829 496 695 1.77E-5 T 11-10-2018 AMD27_00535 568b4f0c9136b6ea01ce42d483cc83ae 205 Pfam PF05036 Sporulation related domain 132 204 7.1E-16 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMD27_00535 568b4f0c9136b6ea01ce42d483cc83ae 205 Gene3D G3DSA:3.30.70.1070 126 205 3.2E-14 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMD27_00535 568b4f0c9136b6ea01ce42d483cc83ae 205 SUPERFAMILY SSF110997 132 204 1.09E-13 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMD27_07040 9cd94ad0d3aa82e2c910c4a2888c3242 366 Pfam PF11876 Protein of unknown function (DUF3396) 127 332 3.9E-43 T 11-10-2018 IPR021815 Protein of unknown function DUF3396 AMD27_06530 ded664438d5097e9503a24da56155f82 290 Pfam PF13737 Transposase DDE domain 1 109 7.0E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_01400 66f8a550ef3fe38721aa40d4d33fa158 66 Pfam PF07869 Protein of unknown function (DUF1656) 3 58 7.2E-13 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 AMD27_05870 26d3c59fa347ac97ea4a7cbb91def3cc 154 Pfam PF03400 IS1 transposase 15 139 8.3E-24 T 11-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMD27_01850 7576c70e974bf76f7c8ceca5161b05cd 405 Pfam PF01757 Acyltransferase family 9 377 7.4E-22 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMD27_06215 777fb39d03c15d5dd2da501d00cc9b8f 202 Pfam PF01810 LysE type translocator 15 201 4.0E-31 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_10075 23a82e586d8769158f60b1d4381f8c14 159 Pfam PF04612 Type II secretion system (T2SS), protein M 21 156 8.4E-14 T 11-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 AMD27_10075 23a82e586d8769158f60b1d4381f8c14 159 SUPERFAMILY SSF103054 91 155 8.11E-6 T 11-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily AMD27_11350 cbeaeec40f468d73830f99e1011437a1 294 Pfam PF13737 Transposase DDE domain 1 109 2.4E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_00595 f23653dfa9a4d6bda1402af33ebaa7be 204 Pfam PF01810 LysE type translocator 14 195 6.5E-24 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_00195 604a0be1066c20648b2e5636e543ddfd 444 SUPERFAMILY SSF52833 239 423 3.13E-6 T 11-10-2018 IPR036249 Thioredoxin-like superfamily AMD27_10000 6388bbff640f9c24c83204ececf25081 447 Pfam PF13449 Esterase-like activity of phytase 42 399 3.1E-51 T 11-10-2018 IPR027372 Phytase-like domain AMD27_01855 8adb6e84d790e975d6538b1452ef87ba 308 SUPERFAMILY SSF52266 160 302 3.3E-7 T 11-10-2018 AMD27_00940 4ba32006dd249a0d23ba3e81b3d823c3 183 Pfam PF09335 SNARE associated Golgi protein 43 168 2.2E-18 T 11-10-2018 IPR032816 SNARE associated Golgi protein AMD27_15485 0978797bdf10b753862a96e8fc16a141 471 Pfam PF03432 Relaxase/Mobilisation nuclease domain 30 215 2.7E-19 T 11-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 AMD27_15725 71fc7b3255a2aa9f68b788a6788c7e9b 303 Pfam PF08774 VRR-NUC domain 116 197 3.1E-6 T 11-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 AMD27_13010 f8dff51dbff353a56ff7480c2e0c2730 256 SUPERFAMILY SSF53448 20 255 5.34E-25 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMD27_05255 757568fae650816082ac8a44917904e6 88 Pfam PF07023 Protein of unknown function (DUF1315) 4 79 1.0E-30 T 11-10-2018 IPR009749 Protein of unknown function DUF1315 AMD27_03425 5c82c3397b5404c9fe78be2eed9409a1 368 Pfam PF05987 Bacterial protein of unknown function (DUF898) 37 361 3.1E-78 T 11-10-2018 IPR010295 Protein of unknown function DUF898 AMD27_14320 61806e6704ef9d8c291320a26b193482 432 Pfam PF03109 ABC1 family 110 227 3.9E-33 T 11-10-2018 IPR004147 UbiB domain AMD27_14320 61806e6704ef9d8c291320a26b193482 432 SUPERFAMILY SSF56112 93 305 3.95E-21 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily AMD27_07505 4b4c8291e1a1e8f328d8e2f718a7c80a 197 Pfam PF00881 Nitroreductase family 7 175 5.7E-13 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMD27_07505 4b4c8291e1a1e8f328d8e2f718a7c80a 197 Gene3D G3DSA:3.40.109.10 1 197 5.7E-81 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_07505 4b4c8291e1a1e8f328d8e2f718a7c80a 197 SUPERFAMILY SSF55469 1 196 6.81E-69 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMD27_08340 e2fa920c1e816d3b5f61b818a1710b2e 144 Pfam PF07030 Protein of unknown function (DUF1320) 2 117 1.2E-25 T 11-10-2018 IPR009752 Bacteriophage Mu, Gp36 AMD27_11450 28af8d2ee020e26eb7de4abb0e732374 123 SUPERFAMILY SSF54593 9 117 3.35E-14 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_11450 28af8d2ee020e26eb7de4abb0e732374 123 Gene3D G3DSA:3.10.180.10 4 122 1.2E-27 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMD27_11315 5d35db83f1c5b6d4739e4d92f51fd397 139 Pfam PF04143 Sulphur transport 75 124 1.5E-6 T 11-10-2018 IPR007272 Sulphur transport domain AMD27_14635 c68c7c0327927294720014a8fb7d9924 207 Pfam PF05137 Fimbrial assembly protein (PilN) 100 167 3.6E-16 T 11-10-2018 IPR007813 Fimbrial assembly PilN AMD27_12960 d000c8344d6283067a2af745c37726fb 254 Pfam PF13803 Domain of unknown function (DUF4184) 1 238 7.5E-40 T 11-10-2018 IPR025238 Protein of unknown function DUF4184 AMD27_03390 10841c65ea6ec20f04a1bb01fffbe995 204 Gene3D G3DSA:3.90.79.10 6 180 8.3E-43 T 11-10-2018 AMD27_03390 10841c65ea6ec20f04a1bb01fffbe995 204 SUPERFAMILY SSF55811 18 177 1.0E-28 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMD27_03390 10841c65ea6ec20f04a1bb01fffbe995 204 Pfam PF00293 NUDIX domain 24 134 9.0E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMD27_02550 1abbed2db83e81c97ec40342a21f65cd 193 Pfam PF02342 TerD domain 1 186 6.7E-56 T 11-10-2018 IPR003325 TerD domain AMD27_02550 1abbed2db83e81c97ec40342a21f65cd 193 Gene3D G3DSA:2.60.60.30 20 184 2.2E-53 T 11-10-2018 AMD27_15245 7897056aa781d48c90bde91cadf7fa8a 253 SUPERFAMILY SSF56935 20 226 7.85E-8 T 11-10-2018 AMD27_15245 7897056aa781d48c90bde91cadf7fa8a 253 Pfam PF16956 Putative general bacterial porin 4 150 1.6E-14 T 11-10-2018 IPR031593 Putative general bacterial porin AMD27_14260 ac75d8b7248e31c2c7c2c30635945ca7 153 Pfam PF04657 Putative inner membrane exporter, YdcZ 12 149 3.0E-40 T 11-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AMD27_06200 6dae52f0f17adb3d51d49c7bfcb40ed5 202 Pfam PF01810 LysE type translocator 14 198 5.0E-24 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_09375 8b8f90066d528179d53412e29922fcc9 212 Pfam PF01810 LysE type translocator 14 206 2.7E-28 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_03250 665bf9e9933996de55422f2f7df2e4e8 167 Pfam PF13689 Domain of unknown function (DUF4154) 34 163 8.4E-20 T 11-10-2018 IPR025293 YfiR-like AMD27_16245 90b54497849550be56d2710b0324a915 280 Pfam PF04471 Restriction endonuclease 5 116 1.9E-9 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AMD27_16245 90b54497849550be56d2710b0324a915 280 SUPERFAMILY SSF52980 6 117 9.12E-13 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_17505 67e29b1699b4baf6b73c1bd7adf92d1b 324 Pfam PF06586 TraK protein 101 309 6.9E-28 T 11-10-2018 IPR010563 Pilus assembly TraK AMD27_16095 bd981355104280612ce98eded4e39281 94 Gene3D G3DSA:3.40.630.30 2 94 1.3E-24 T 11-10-2018 AMD27_16095 bd981355104280612ce98eded4e39281 94 Pfam PF14542 GCN5-related N-acetyl-transferase 15 92 1.2E-22 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMD27_16095 bd981355104280612ce98eded4e39281 94 SUPERFAMILY SSF55729 4 93 3.72E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMD27_13270 51619753981c468ee94d044b988f2eec 131 Pfam PF04606 Ogr/Delta-like zinc finger 9 52 1.5E-11 T 11-10-2018 IPR007684 Zinc finger, Ogr/Delta-type AMD27_13540 2e03c85cd83a43652f670e92404a8db0 187 Gene3D G3DSA:3.30.160.150 28 169 1.2E-35 T 11-10-2018 AMD27_13540 2e03c85cd83a43652f670e92404a8db0 187 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 8 164 18.488 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AMD27_09775 3f67b270f7ef21fea97ee118ac09ec70 321 Pfam PF13271 Domain of unknown function (DUF4062) 5 91 7.1E-18 T 11-10-2018 IPR025139 Domain of unknown function DUF4062 AMD27_01600 ffb9f6af995ad11de9b5ed46b888442e 169 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 3.4E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMD27_01600 ffb9f6af995ad11de9b5ed46b888442e 169 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 9 137 4.4E-23 T 11-10-2018 IPR013362 Pilus modification type IV, PilV AMD27_17820 dcac093d07bb3828de1ee64fe8b76ef1 470 Gene3D G3DSA:2.60.120.260 349 466 3.7E-5 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily AMD27_14605 de24d1babdd6a8f000b553bec0f0c9eb 285 Gene3D G3DSA:3.30.70.1070 85 184 2.0E-7 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMD27_11930 cfef8b22bbdcb5498869ff266ce31825 171 Pfam PF02417 Chromate transporter 5 166 1.5E-33 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMD27_11740 58b8a1e24e2557b0fea0ce7fecc92e63 122 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 8.9E-11 T 11-10-2018 AMD27_11740 58b8a1e24e2557b0fea0ce7fecc92e63 122 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 8.9E-11 T 11-10-2018 AMD27_11740 58b8a1e24e2557b0fea0ce7fecc92e63 122 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 8.9E-11 T 11-10-2018 AMD27_11740 58b8a1e24e2557b0fea0ce7fecc92e63 122 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 79 8.3E-18 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMD27_12245 3ee2fcd3458481a4166fa31de11d66c9 151 Gene3D G3DSA:1.20.1260.50 1 150 1.5E-49 T 11-10-2018 AMD27_06290 168edec7076c5ee3fa8d0fbd92da037e 404 Pfam PF11726 Inovirus Gp2 196 346 4.4E-8 T 11-10-2018 AMD27_01150 96ab128672e73c20abd70e27ef02982e 247 Pfam PF01203 Type II secretion system (T2SS), protein N 41 212 3.7E-15 T 11-10-2018 IPR022792 Type II secretion system, protein N AMD27_11735 0a479d30bb99a821b968ead9e6d76a41 103 Pfam PF00902 Sec-independent protein translocase protein (TatC) 20 97 8.9E-12 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMD27_04795 a77bd11d746d24d424c2cfed4b33042f 333 Pfam PF08908 Domain of unknown function (DUF1852) 1 319 9.2E-160 T 11-10-2018 IPR015004 Protein of unknown function DUF1852 AMD27_10980 c9f65c459665b2a941eaf9d4d9572381 164 SUPERFAMILY SSF52980 96 145 2.68E-5 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMD27_06080 5d5c51d5eed4d17cba7afc8ec7d9644f 248 Pfam PF01435 Peptidase family M48 45 228 2.6E-21 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMD27_01975 3d6e3f9a9dbaca9cfd69e42538bde763 80 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 9.1E-28 T 11-10-2018 IPR021250 Protein of unknown function DUF2789 AMD27_01975 3d6e3f9a9dbaca9cfd69e42538bde763 80 Gene3D G3DSA:1.10.10.1130 1 79 2.8E-27 T 11-10-2018 AMD27_15240 0b2c5dc80a86d6d85a3f8729c550639a 258 Pfam PF16956 Putative general bacterial porin 1 258 1.1E-20 T 11-10-2018 IPR031593 Putative general bacterial porin AMD27_15240 0b2c5dc80a86d6d85a3f8729c550639a 258 SUPERFAMILY SSF56935 28 258 6.02E-10 T 11-10-2018 AMD27_13130 45ebc64db771e28411c14c31f3c9b3e6 131 Pfam PF06891 P2 phage tail completion protein R (GpR) 18 108 1.3E-9 T 11-10-2018 IPR009678 Bacteriophage tail completion protein R AMD27_11835 35c542b3254f66502dd49ee546df2ef8 486 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 57 486 1.1E-14 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD27_11835 35c542b3254f66502dd49ee546df2ef8 486 SUPERFAMILY SSF56935 18 486 3.16E-51 T 11-10-2018 AMD27_11835 35c542b3254f66502dd49ee546df2ef8 486 Gene3D G3DSA:2.40.160.60 183 486 5.7E-21 T 11-10-2018 AMD27_00620 af69979f04bf8106368b3a43d0246e6b 130 Pfam PF03899 ATP synthase I chain 16 112 7.7E-20 T 11-10-2018 IPR005598 ATP synthase protein I AMD27_06010 a82d9917f7bfd7ab075dabd97aed00f9 403 Pfam PF04143 Sulphur transport 53 379 4.4E-82 T 11-10-2018 IPR007272 Sulphur transport domain AMD27_13850 92d2f80bbd51a1d0380790424388bf26 294 SUPERFAMILY SSF103481 191 287 1.03E-6 T 11-10-2018 AMD27_13850 92d2f80bbd51a1d0380790424388bf26 294 Pfam PF00892 EamA-like transporter family 157 285 6.1E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMD27_08365 4f5325a017dcbd69f7885c6da6157218 415 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 56 156 2.8E-13 T 11-10-2018 IPR006528 Phage head morphogenesis domain AMD27_08365 4f5325a017dcbd69f7885c6da6157218 415 Pfam PF04233 Phage Mu protein F like protein 53 154 1.8E-23 T 11-10-2018 IPR006528 Phage head morphogenesis domain AMD27_14565 1888d233a41add5b5cd80f7b69751f59 121 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 107 6.4E-26 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMD27_15035 06912df60b78b32bb514ee6964c801df 178 Pfam PF05128 Domain of unknown function (DUF697) 35 157 1.6E-5 T 11-10-2018 IPR021147 Protein of unknown function DUF697 AMD27_08480 b46b1df06f54d4a064a1a1d8eed753c1 148 Pfam PF06892 Phage regulatory protein CII (CP76) 20 134 2.8E-6 T 11-10-2018 IPR009679 Bacteriophage 186, CII AMD27_12710 1830fd40ba3711783cd1e3baba806021 242 SUPERFAMILY SSF158668 52 163 1.49E-14 T 11-10-2018 IPR038026 MtlR-like superfamily AMD27_04090 cd3e09beb095dd29c56d1d4c131cf2ed 540 Pfam PF01384 Phosphate transporter family 82 529 3.5E-86 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AMD27_16450 a0645f9de8795ab95659a1a21c796cdd 207 SUPERFAMILY SSF117987 155 201 3.14E-5 T 11-10-2018 AMD27_15100 ebc56d08f1278f14ad41df1a0e2a9208 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 43 92 1.0E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_17495 262bc0d22ffcb6b40db8694a66e25621 95 Pfam PF07178 TraL protein 7 79 1.3E-9 T 11-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 AMD27_01055 c577926c51cf3b2354a28948d8fcd1e4 70 Pfam PF17032 zinc-ribbon family 20 66 1.5E-8 T 11-10-2018 IPR031493 Zinc-ribbon 15 AMD27_08025 fe5354f44fd07a95bbaf67a839a31fbb 178 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 178 6.9E-52 T 11-10-2018 IPR018636 Protein of unknown function DUF2058 AMD27_15165 bed19b824df99b647d4230aa56eb0ddf 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 92 4.2E-15 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_11600 04dce7266c9150efb041e479f598ee72 179 Gene3D G3DSA:2.60.40.1190 27 179 7.1E-8 T 11-10-2018 AMD27_14965 16e8146cd23690aeaf04ab1db3ead73b 117 Pfam PF06993 Protein of unknown function (DUF1304) 8 114 2.7E-40 T 11-10-2018 IPR009732 Protein of unknown function DUF1304 AMD27_09380 9093e9b50efc55783d151dae7cf1d6c0 195 Pfam PF04186 FxsA cytoplasmic membrane protein 6 113 2.4E-21 T 11-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AMD27_01720 3bb8e5aa6c565955ae5861df7952155e 152 Gene3D G3DSA:1.20.120.520 1 139 6.0E-8 T 11-10-2018 AMD27_01720 3bb8e5aa6c565955ae5861df7952155e 152 Pfam PF01814 Hemerythrin HHE cation binding domain 3 119 4.7E-11 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMD27_11310 cfd97a54d366920545bb6b7a45e86a3d 146 Pfam PF04143 Sulphur transport 35 132 4.2E-7 T 11-10-2018 IPR007272 Sulphur transport domain AMD27_05040 266a05597927eb1a4da328b8556025ed 170 Gene3D G3DSA:2.130.10.10 1 159 4.9E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMD27_01995 b913f2eb1e8eda8a39a48565d4cf60bd 78 Pfam PF09834 Predicted membrane protein (DUF2061) 17 66 3.9E-18 T 11-10-2018 IPR018638 Domain of unknown function DUF2061, membrane AMD27_17815 d76da9511245dd80e841b0db7e005c4f 490 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 184 366 7.7E-12 T 11-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN AMD27_07200 e6b0327fd832b95ef85547aeed4c77ec 399 Pfam PF02698 DUF218 domain 235 382 1.1E-19 T 11-10-2018 IPR003848 Domain of unknown function DUF218 AMD27_13340 45870b4e77aa1e08e98ec329ab934616 144 Gene3D G3DSA:3.30.110.70 53 134 5.2E-5 T 11-10-2018 AMD27_00735 9f0b633d3aee56ed90a5767d576d7863 401 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 122 350 1.3E-24 T 11-10-2018 IPR018713 Domain of unknown function DUF2236 AMD27_12240 dc7556c52d87c9c3dcb1e0d008be3d0a 207 Pfam PF01810 LysE type translocator 17 203 6.1E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_09670 8f0b1bcdfd495ab1b7c2e609bfe43360 208 Pfam PF01618 MotA/TolQ/ExbB proton channel family 64 184 5.6E-32 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMD27_17860 8c03a313521290189da05e7ea232755a 230 Pfam PF15579 Immunity protein 52 127 216 1.0E-5 T 11-10-2018 IPR028969 Immunity protein 52 AMD27_09940 2b5cfa330da750cf353aa08aeffdb5a4 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 44 91 1.8E-17 T 11-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMD27_13165 1423de2509b6165e140aa4b66c0dede2 296 Pfam PF12571 Phage tail-collar fibre protein 1 147 2.5E-25 T 11-10-2018 IPR022225 Phage tail fibre protein AMD27_11375 fb4f3310bd0be114605b04303498c0ad 315 Pfam PF13737 Transposase DDE domain 22 130 8.4E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_00480 9da90cdde22480f797c528214161fe52 196 Pfam PF01810 LysE type translocator 13 160 7.0E-7 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMD27_15000 567383581ac043f88dde05087b9e8b8b 107 Pfam PF13612 Transposase DDE domain 42 106 6.8E-9 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_15130 c4f2df4328b0822c1e54554f066b16aa 176 Pfam PF04982 HPP family 46 166 7.8E-38 T 11-10-2018 IPR007065 HPP AMD27_10005 ca3b0524950a64edd974d70e43bf05dc 184 Pfam PF14328 Domain of unknown function (DUF4385) 22 177 3.3E-67 T 11-10-2018 IPR025494 Protein of unknown function DUF4385 AMD27_08055 837f0e7ff99105119eecc64cafd98195 294 Pfam PF13737 Transposase DDE domain 1 109 9.4E-43 T 11-10-2018 IPR025668 Transposase DDE domain AMD27_12505 a013b27a9d4010bc6dd0cbb842ae4fc1 220 Pfam PF04315 Elongation factor P hydroxylase 53 214 3.3E-60 T 11-10-2018 IPR007411 Elongation factor P hydroxylase AMD27_06890 e969e849f5c4bde353fe16dac9ae9429 157 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 101 3.2E-37 T 11-10-2018 IPR018738 Protein of unknown function DUF2280 AMD27_10825 0184fa1c87e679f4aecc2eeb7d577b1e 584 Pfam PF03929 PepSY-associated TM region 15 427 2.8E-68 T 11-10-2018 IPR005625 PepSY-associated TM protein AMD27_01715 018f08ec60a96346acd384c8f8809733 255 Pfam PF01925 Sulfite exporter TauE/SafE 10 247 1.7E-38 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021