locus-tag class description AMQ28_00010 PF02322 Cytochrome bd terminal oxidase subunit II AMQ28_00015 PF01654 Cytochrome bd terminal oxidase subunit I AMQ28_00040 PF01230 HIT domain AMQ28_00055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_00055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_00065 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_00070 PF02575 YbaB/EbfC DNA-binding family AMQ28_00075 PF13662 Toprim domain AMQ28_00075 PF02132 RecR protein AMQ28_00080 PF00570 HRDC domain AMQ28_00080 PF01612 3'-5' exonuclease AMQ28_00085 PF05166 YcgL domain AMQ28_00095 PF17862 AAA+ lid domain AMQ28_00095 PF01434 Peptidase family M41 AMQ28_00095 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_00105 PF00571 CBS domain AMQ28_00105 PF00478 IMP dehydrogenase / GMP reductase domain AMQ28_00135 PF05193 Peptidase M16 inactive domain AMQ28_00135 PF00675 Insulinase (Peptidase family M16) AMQ28_00140 PF02881 SRP54-type protein, helical bundle domain AMQ28_00140 PF00448 SRP54-type protein, GTPase domain AMQ28_00180 PF13333 Integrase core domain AMQ28_00180 PF00665 Integrase core domain AMQ28_00180 PF13276 HTH-like domain AMQ28_00185 PF01527 Transposase AMQ28_00190 PF01464 Transglycosylase SLT domain AMQ28_00190 PF10145 Phage-related minor tail protein AMQ28_00190 PF01551 Peptidase family M23 AMQ28_00195 PF01965 DJ-1/PfpI family AMQ28_00205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_00205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_00205 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_00210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_00210 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_00210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_00215 PF03109 ABC1 family AMQ28_00230 PF05175 Methyltransferase small domain AMQ28_00235 PF01264 Chorismate synthase AMQ28_00245 PF02542 YgbB family AMQ28_00255 PF00793 DAHP synthetase I family AMQ28_00260 PF01925 Sulfite exporter TauE/SafE AMQ28_00275 PF07715 TonB-dependent Receptor Plug Domain AMQ28_00275 PF07660 Secretin and TonB N terminus short domain AMQ28_00275 PF00593 TonB dependent receptor AMQ28_00280 PF02684 Lipid-A-disaccharide synthetase AMQ28_00285 PF12833 Helix-turn-helix domain AMQ28_00285 PF12852 Cupin AMQ28_00290 PF00487 Fatty acid desaturase AMQ28_00295 PF00375 Sodium:dicarboxylate symporter family AMQ28_00300 PF04073 Aminoacyl-tRNA editing domain AMQ28_00310 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMQ28_00315 PF02277 Phosphoribosyltransferase AMQ28_00325 PF02654 Cobalamin-5-phosphate synthase AMQ28_00345 PF02635 DsrE/DsrF-like family AMQ28_00350 PF13333 Integrase core domain AMQ28_00350 PF00665 Integrase core domain AMQ28_00350 PF13276 HTH-like domain AMQ28_00365 PF16363 GDP-mannose 4,6 dehydratase AMQ28_00370 PF00206 Lyase AMQ28_00370 PF10415 Fumarase C C-terminus AMQ28_00390 PF01654 Cytochrome bd terminal oxidase subunit I AMQ28_00395 PF02322 Cytochrome bd terminal oxidase subunit II AMQ28_00400 PF00565 Staphylococcal nuclease homologue AMQ28_00405 PF03466 LysR substrate binding domain AMQ28_00405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_00410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_00410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_00410 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_00425 PF00106 short chain dehydrogenase AMQ28_00440 PF13091 PLD-like domain AMQ28_00445 PF00107 Zinc-binding dehydrogenase AMQ28_00445 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_00450 PF00155 Aminotransferase class I and II AMQ28_00455 PF00324 Amino acid permease AMQ28_00460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMQ28_00465 PF00793 DAHP synthetase I family AMQ28_00470 PF07690 Major Facilitator Superfamily AMQ28_00475 PF01597 Glycine cleavage H-protein AMQ28_00480 PF12833 Helix-turn-helix domain AMQ28_00480 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_00490 PF00005 ABC transporter AMQ28_00490 PF00664 ABC transporter transmembrane region AMQ28_00500 PF13737 Transposase DDE domain AMQ28_00520 PF13936 Helix-turn-helix domain AMQ28_00520 PF00665 Integrase core domain AMQ28_00525 PF00924 Mechanosensitive ion channel AMQ28_00530 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMQ28_00540 PF13276 HTH-like domain AMQ28_00540 PF13333 Integrase core domain AMQ28_00540 PF00665 Integrase core domain AMQ28_00545 PF00375 Sodium:dicarboxylate symporter family AMQ28_00550 PF00916 Sulfate permease family AMQ28_00550 PF01740 STAS domain AMQ28_00555 PF01553 Acyltransferase AMQ28_00560 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_00565 PF03466 LysR substrate binding domain AMQ28_00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_00570 PF00440 Bacterial regulatory proteins, tetR family AMQ28_00570 PF08360 QacR-like protein, C-terminal region AMQ28_00575 PF12146 Serine aminopeptidase, S33 AMQ28_00580 PF00108 Thiolase, N-terminal domain AMQ28_00580 PF02803 Thiolase, C-terminal domain AMQ28_00585 PF01144 Coenzyme A transferase AMQ28_00590 PF01144 Coenzyme A transferase AMQ28_00595 PF03594 Benzoate membrane transport protein AMQ28_00600 PF00106 short chain dehydrogenase AMQ28_00605 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_00605 PF00970 Oxidoreductase FAD-binding domain AMQ28_00605 PF00175 Oxidoreductase NAD-binding domain AMQ28_00610 PF00866 Ring hydroxylating beta subunit AMQ28_00615 PF00355 Rieske [2Fe-2S] domain AMQ28_00615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMQ28_00620 PF00775 Dioxygenase AMQ28_00620 PF04444 Catechol dioxygenase N terminus AMQ28_00625 PF02426 Muconolactone delta-isomerase AMQ28_00630 PF13378 Enolase C-terminal domain-like AMQ28_00630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMQ28_00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_00635 PF03466 LysR substrate binding domain AMQ28_00640 PF07690 Major Facilitator Superfamily AMQ28_00650 PF00175 Oxidoreductase NAD-binding domain AMQ28_00650 PF00258 Flavodoxin AMQ28_00650 PF00667 FAD binding domain AMQ28_00655 PF12802 MarR family AMQ28_00660 PF07690 Major Facilitator Superfamily AMQ28_00665 PF02667 Short chain fatty acid transporter AMQ28_00670 PF01144 Coenzyme A transferase AMQ28_00675 PF01144 Coenzyme A transferase AMQ28_00680 PF00682 HMGL-like AMQ28_00685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_00685 PF00364 Biotin-requiring enzyme AMQ28_00685 PF00289 Biotin carboxylase, N-terminal domain AMQ28_00685 PF02785 Biotin carboxylase C-terminal domain AMQ28_00690 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_00695 PF01039 Carboxyl transferase domain AMQ28_00700 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_00700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_00700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_00705 PF17925 Tetracyclin repressor-like, C-terminal domain AMQ28_00705 PF00440 Bacterial regulatory proteins, tetR family AMQ28_00710 PF13193 AMP-binding enzyme C-terminal domain AMQ28_00710 PF00501 AMP-binding enzyme AMQ28_00725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_00725 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_00730 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_00730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_00730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_00735 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_00745 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_00750 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMQ28_00750 PF18381 YcaO cyclodehydratase C-terminal domain AMQ28_00755 PF01614 Bacterial transcriptional regulator AMQ28_00755 PF09339 IclR helix-turn-helix domain AMQ28_00765 PF00698 Acyl transferase domain AMQ28_00780 PF03466 LysR substrate binding domain AMQ28_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_00785 PF00857 Isochorismatase family AMQ28_00800 PF12706 Beta-lactamase superfamily domain AMQ28_00810 PF13333 Integrase core domain AMQ28_00810 PF00665 Integrase core domain AMQ28_00810 PF13276 HTH-like domain AMQ28_00840 PF01032 FecCD transport family AMQ28_00845 PF00593 TonB dependent receptor AMQ28_00845 PF07715 TonB-dependent Receptor Plug Domain AMQ28_00850 PF00392 Bacterial regulatory proteins, gntR family AMQ28_00850 PF00155 Aminotransferase class I and II AMQ28_00860 PF00884 Sulfatase AMQ28_00865 PF03781 Sulfatase-modifying factor enzyme 1 AMQ28_00875 PF01717 Cobalamin-independent synthase, Catalytic domain AMQ28_00875 PF08267 Cobalamin-independent synthase, N-terminal domain AMQ28_00880 PF01613 Flavin reductase like domain AMQ28_00885 PF09339 IclR helix-turn-helix domain AMQ28_00885 PF01614 Bacterial transcriptional regulator AMQ28_00890 PF01494 FAD binding domain AMQ28_00895 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_00895 PF00672 HAMP domain AMQ28_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_00900 PF00486 Transcriptional regulatory protein, C terminal AMQ28_00900 PF00072 Response regulator receiver domain AMQ28_00905 PF03928 Haem-degrading AMQ28_00910 PF00576 HIUase/Transthyretin family AMQ28_00920 PF00107 Zinc-binding dehydrogenase AMQ28_00920 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_00925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMQ28_00935 PF00872 Transposase, Mutator family AMQ28_00940 PF07690 Major Facilitator Superfamily AMQ28_00955 PF03601 Conserved hypothetical protein 698 AMQ28_00970 PF01494 FAD binding domain AMQ28_00975 PF04444 Catechol dioxygenase N terminus AMQ28_00975 PF00775 Dioxygenase AMQ28_00980 PF07690 Major Facilitator Superfamily AMQ28_00990 PF00330 Aconitase family (aconitate hydratase) AMQ28_00990 PF00694 Aconitase C-terminal domain AMQ28_00995 PF07804 HipA-like C-terminal domain AMQ28_00995 PF13657 HipA N-terminal domain AMQ28_01005 PF09905 DNA-binding protein VF530 AMQ28_01025 PF12697 Alpha/beta hydrolase family AMQ28_01030 PF00753 Metallo-beta-lactamase superfamily AMQ28_01050 PF00717 Peptidase S24-like AMQ28_01060 PF11799 impB/mucB/samB family C-terminal domain AMQ28_01060 PF00817 impB/mucB/samB family AMQ28_01060 PF13438 Domain of unknown function (DUF4113) AMQ28_01065 PF01220 Dehydroquinase class II AMQ28_01070 PF00364 Biotin-requiring enzyme AMQ28_01075 PF00289 Biotin carboxylase, N-terminal domain AMQ28_01075 PF02785 Biotin carboxylase C-terminal domain AMQ28_01075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_01085 PF01425 Amidase AMQ28_01110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_01110 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_01125 PF03466 LysR substrate binding domain AMQ28_01130 PF00557 Metallopeptidase family M24 AMQ28_01135 PF13737 Transposase DDE domain AMQ28_01140 PF05525 Branched-chain amino acid transport protein AMQ28_01185 PF03616 Sodium/glutamate symporter AMQ28_01200 PF06434 Aconitate hydratase 2 N-terminus AMQ28_01200 PF11791 Aconitate B N-terminal domain AMQ28_01200 PF00330 Aconitase family (aconitate hydratase) AMQ28_01225 PF00313 'Cold-shock' DNA-binding domain AMQ28_01255 PF01103 Surface antigen AMQ28_01255 PF17243 POTRA domain TamA domain 1 AMQ28_01255 PF07244 Surface antigen variable number repeat AMQ28_01260 PF07690 Major Facilitator Superfamily AMQ28_01265 PF03232 Ubiquinone biosynthesis protein COQ7 AMQ28_01280 PF02152 Dihydroneopterin aldolase AMQ28_01285 PF03109 ABC1 family AMQ28_01290 PF00899 ThiF family AMQ28_01295 PF00501 AMP-binding enzyme AMQ28_01295 PF13193 AMP-binding enzyme C-terminal domain AMQ28_01300 PF00106 short chain dehydrogenase AMQ28_01305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_01305 PF12833 Helix-turn-helix domain AMQ28_01320 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_01325 PF17827 PrmC N-terminal domain AMQ28_01325 PF13847 Methyltransferase domain AMQ28_01330 PF03462 PCRF domain AMQ28_01330 PF00472 RF-1 domain AMQ28_01345 PF00296 Luciferase-like monooxygenase AMQ28_01350 PF05360 yiaA/B two helix domain AMQ28_01365 PF03618 Kinase/pyrophosphorylase AMQ28_01370 PF00391 PEP-utilising enzyme, mobile domain AMQ28_01370 PF02896 PEP-utilising enzyme, TIM barrel domain AMQ28_01370 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMQ28_01380 PF06481 COX Aromatic Rich Motif AMQ28_01380 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMQ28_01385 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMQ28_01390 PF00510 Cytochrome c oxidase subunit III AMQ28_01395 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMQ28_01400 PF01040 UbiA prenyltransferase family AMQ28_01405 PF01250 Ribosomal protein S6 AMQ28_01410 PF01084 Ribosomal protein S18 AMQ28_01415 PF01281 Ribosomal protein L9, N-terminal domain AMQ28_01415 PF03948 Ribosomal protein L9, C-terminal domain AMQ28_01420 PF03796 DnaB-like helicase C terminal domain AMQ28_01420 PF00772 DnaB-like helicase N terminal domain AMQ28_01425 PF01168 Alanine racemase, N-terminal domain AMQ28_01425 PF00842 Alanine racemase, C-terminal domain AMQ28_01435 PF08379 Bacterial transglutaminase-like N-terminal region AMQ28_01435 PF01841 Transglutaminase-like superfamily AMQ28_01445 PF14403 Circularly permuted ATP-grasp type 2 AMQ28_01455 PF01645 Conserved region in glutamate synthase AMQ28_01470 PF01565 FAD binding domain AMQ28_01470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMQ28_01475 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMQ28_01480 PF00465 Iron-containing alcohol dehydrogenase AMQ28_01485 PF12169 DNA polymerase III subunits gamma and tau domain III AMQ28_01485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMQ28_01485 PF12170 DNA polymerase III tau subunit V interacting with alpha AMQ28_01495 PF00144 Beta-lactamase AMQ28_01510 PF00108 Thiolase, N-terminal domain AMQ28_01510 PF02803 Thiolase, C-terminal domain AMQ28_01525 PF03466 LysR substrate binding domain AMQ28_01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_01530 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMQ28_01535 PF01810 LysE type translocator AMQ28_01540 PF03594 Benzoate membrane transport protein AMQ28_01545 PF00893 Small Multidrug Resistance protein AMQ28_01550 PF00582 Universal stress protein family AMQ28_01555 PF00582 Universal stress protein family AMQ28_01570 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMQ28_01570 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMQ28_01570 PF01433 Peptidase family M1 domain AMQ28_01590 PF02110 Hydroxyethylthiazole kinase family AMQ28_01595 PF03741 Integral membrane protein TerC family AMQ28_01595 PF03471 Transporter associated domain AMQ28_01610 PF00171 Aldehyde dehydrogenase family AMQ28_01615 PF01274 Malate synthase AMQ28_01620 PF03969 AFG1-like ATPase AMQ28_01625 PF03956 Lysine exporter LysO AMQ28_01630 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMQ28_01640 PF00216 Bacterial DNA-binding protein AMQ28_01645 PF00575 S1 RNA binding domain AMQ28_01650 PF02224 Cytidylate kinase AMQ28_01660 PF14437 MafB19-like deaminase AMQ28_01670 PF03167 Uracil DNA glycosylase superfamily AMQ28_01680 PF03934 Type II secretion system (T2SS), protein K AMQ28_01685 PF11612 Type II secretion system (T2SS), protein J AMQ28_01685 PF07963 Prokaryotic N-terminal methylation motif AMQ28_01690 PF02501 Type II secretion system (T2SS), protein I AMQ28_01690 PF07963 Prokaryotic N-terminal methylation motif AMQ28_01695 PF12019 Type II transport protein GspH AMQ28_01695 PF07963 Prokaryotic N-terminal methylation motif AMQ28_01700 PF00440 Bacterial regulatory proteins, tetR family AMQ28_01705 PF01026 TatD related DNase AMQ28_01715 PF09115 DNA polymerase III, delta subunit, C terminal AMQ28_01720 PF02348 Cytidylyltransferase AMQ28_01725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMQ28_01730 PF00664 ABC transporter transmembrane region AMQ28_01730 PF00005 ABC transporter AMQ28_01740 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_01745 PF17762 HTH domain found in ParB protein AMQ28_01745 PF02195 ParB-like nuclease domain AMQ28_01750 PF13614 AAA domain AMQ28_01755 PF02527 rRNA small subunit methyltransferase G AMQ28_01760 PF00483 Nucleotidyl transferase AMQ28_01765 PF01636 Phosphotransferase enzyme family AMQ28_01770 PF03968 OstA-like protein AMQ28_01770 PF04453 LPS transport system D AMQ28_01775 PF09312 SurA N-terminal domain AMQ28_01775 PF00639 PPIC-type PPIASE domain AMQ28_01780 PF17209 Hfq protein AMQ28_01790 PF01119 DNA mismatch repair protein, C-terminal domain AMQ28_01790 PF08676 MutL C terminal dimerisation domain AMQ28_01795 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMQ28_01800 PF00849 RNA pseudouridylate synthase AMQ28_01800 PF01479 S4 domain AMQ28_01815 PF01479 S4 domain AMQ28_01815 PF00849 RNA pseudouridylate synthase AMQ28_01820 PF04284 Protein of unknown function (DUF441) AMQ28_01825 PF03707 Bacterial signalling protein N terminal repeat AMQ28_01825 PF00563 EAL domain AMQ28_01825 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_01830 PF03466 LysR substrate binding domain AMQ28_01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_01835 PF05970 PIF1-like helicase AMQ28_01835 PF14493 Helix-turn-helix domain AMQ28_01845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMQ28_01845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMQ28_01850 PF00271 Helicase conserved C-terminal domain AMQ28_01850 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMQ28_01850 PF00270 DEAD/DEAH box helicase AMQ28_01850 PF11898 Domain of unknown function (DUF3418) AMQ28_01850 PF04408 Helicase associated domain (HA2) AMQ28_01855 PF00578 AhpC/TSA family AMQ28_01855 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_01865 PF01596 O-methyltransferase AMQ28_01875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_01875 PF13192 Thioredoxin domain AMQ28_01890 PF04143 Sulphur transport AMQ28_01910 PF03060 Nitronate monooxygenase AMQ28_01915 PF01207 Dihydrouridine synthase (Dus) AMQ28_01940 PF03358 NADPH-dependent FMN reductase AMQ28_01945 PF01758 Sodium Bile acid symporter family AMQ28_02000 PF13333 Integrase core domain AMQ28_02000 PF00665 Integrase core domain AMQ28_02000 PF13276 HTH-like domain AMQ28_02010 PF07759 Protein of unknown function (DUF1615) AMQ28_02020 PF00487 Fatty acid desaturase AMQ28_02025 PF00175 Oxidoreductase NAD-binding domain AMQ28_02025 PF00970 Oxidoreductase FAD-binding domain AMQ28_02025 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_02030 PF00440 Bacterial regulatory proteins, tetR family AMQ28_02035 PF12137 RNA polymerase recycling family C-terminal AMQ28_02035 PF00176 SNF2 family N-terminal domain AMQ28_02035 PF18339 RapA N-terminal Tudor like domain 1 AMQ28_02035 PF18337 RapA N-terminal Tudor like domain AMQ28_02035 PF00271 Helicase conserved C-terminal domain AMQ28_02040 PF00849 RNA pseudouridylate synthase AMQ28_02055 PF01527 Transposase AMQ28_02060 PF13276 HTH-like domain AMQ28_02060 PF00665 Integrase core domain AMQ28_02060 PF13333 Integrase core domain AMQ28_02070 PF03928 Haem-degrading AMQ28_02075 PF00202 Aminotransferase class-III AMQ28_02080 PF02581 Thiamine monophosphate synthase AMQ28_02090 PF01928 CYTH domain AMQ28_02110 PF05193 Peptidase M16 inactive domain AMQ28_02110 PF00675 Insulinase (Peptidase family M16) AMQ28_02115 PF02567 Phenazine biosynthesis-like protein AMQ28_02120 PF00753 Metallo-beta-lactamase superfamily AMQ28_02120 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMQ28_02145 PF03793 PASTA domain AMQ28_02145 PF00069 Protein kinase domain AMQ28_02165 PF00814 Glycoprotease family AMQ28_02170 PF01165 Ribosomal protein S21 AMQ28_02190 PF01435 Peptidase family M48 AMQ28_02190 PF13181 Tetratricopeptide repeat AMQ28_02195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_02195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_02210 PF00156 Phosphoribosyl transferase domain AMQ28_02215 PF02674 Colicin V production protein AMQ28_02220 PF01180 Dihydroorotate dehydrogenase AMQ28_02240 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMQ28_02240 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMQ28_02245 PF00881 Nitroreductase family AMQ28_02255 PF00270 DEAD/DEAH box helicase AMQ28_02255 PF00271 Helicase conserved C-terminal domain AMQ28_02260 PF00313 'Cold-shock' DNA-binding domain AMQ28_02265 PF04542 Sigma-70 region 2 AMQ28_02265 PF04545 Sigma-70, region 4 AMQ28_02265 PF00140 Sigma-70 factor, region 1.2 AMQ28_02270 PF04241 Protein of unknown function (DUF423) AMQ28_02280 PF05690 Thiazole biosynthesis protein ThiG AMQ28_02285 PF03992 Antibiotic biosynthesis monooxygenase AMQ28_02290 PF02525 Flavodoxin-like fold AMQ28_02295 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_02295 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_02300 PF00916 Sulfate permease family AMQ28_02300 PF01740 STAS domain AMQ28_02305 PF02390 Putative methyltransferase AMQ28_02320 PF05736 OprF membrane domain AMQ28_02320 PF00691 OmpA family AMQ28_02325 PF01979 Amidohydrolase family AMQ28_02330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMQ28_02330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMQ28_02340 PF02926 THUMP domain AMQ28_02340 PF01170 Putative RNA methylase family UPF0020 AMQ28_02340 PF10672 S-adenosylmethionine-dependent methyltransferase AMQ28_02355 PF02861 Clp amino terminal domain, pathogenicity island component AMQ28_02355 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_02355 PF07724 AAA domain (Cdc48 subfamily) AMQ28_02355 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_02355 PF17871 AAA lid domain AMQ28_02360 PF02566 OsmC-like protein AMQ28_02365 PF00027 Cyclic nucleotide-binding domain AMQ28_02365 PF13545 Crp-like helix-turn-helix domain AMQ28_02370 PF00248 Aldo/keto reductase family AMQ28_02385 PF00709 Adenylosuccinate synthetase AMQ28_02390 PF13393 Histidyl-tRNA synthetase AMQ28_02400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMQ28_02400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_02405 PF01411 tRNA synthetases class II (A) AMQ28_02405 PF02272 DHHA1 domain AMQ28_02405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_02410 PF00696 Amino acid kinase family AMQ28_02410 PF01842 ACT domain AMQ28_02410 PF13840 ACT domain AMQ28_02415 PF02599 Global regulator protein family AMQ28_02420 PF01351 Ribonuclease HII AMQ28_02430 PF01292 Prokaryotic cytochrome b561 AMQ28_02440 PF00962 Adenosine/AMP deaminase AMQ28_02445 PF00860 Permease family AMQ28_02450 PF00875 DNA photolyase AMQ28_02450 PF03441 FAD binding domain of DNA photolyase AMQ28_02460 PF03883 Peroxide stress protein YaaA AMQ28_02475 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMQ28_02480 PF01817 Chorismate mutase type II AMQ28_02480 PF01842 ACT domain AMQ28_02480 PF00800 Prephenate dehydratase AMQ28_02490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_02490 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_02490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_02495 PF00375 Sodium:dicarboxylate symporter family AMQ28_02500 PF02885 Glycosyl transferase family, helical bundle domain AMQ28_02500 PF00591 Glycosyl transferase family, a/b domain AMQ28_02500 PF00117 Glutamine amidotransferase class-I AMQ28_02505 PF07023 Protein of unknown function (DUF1315) AMQ28_02510 PF01513 ATP-NAD kinase AMQ28_02515 PF00905 Penicillin binding protein transpeptidase domain AMQ28_02515 PF14814 Bifunctional transglycosylase second domain AMQ28_02515 PF00912 Transglycosylase AMQ28_02525 PF00293 NUDIX domain AMQ28_02535 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_02535 PF08521 Two-component sensor kinase N-terminal AMQ28_02540 PF00072 Response regulator receiver domain AMQ28_02540 PF00486 Transcriptional regulatory protein, C terminal AMQ28_02550 PF00437 Type II/IV secretion system protein AMQ28_02555 PF18389 TrmO C-terminal domain AMQ28_02555 PF01980 tRNA-methyltransferase O AMQ28_02560 PF00175 Oxidoreductase NAD-binding domain AMQ28_02560 PF00970 Oxidoreductase FAD-binding domain AMQ28_02580 PF13411 MerR HTH family regulatory protein AMQ28_02585 PF13192 Thioredoxin domain AMQ28_02585 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_02595 PF05816 Toxic anion resistance protein (TelA) AMQ28_02605 PF00375 Sodium:dicarboxylate symporter family AMQ28_02610 PF03466 LysR substrate binding domain AMQ28_02610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_02615 PF10415 Fumarase C C-terminus AMQ28_02615 PF00206 Lyase AMQ28_02625 PF13559 Domain of unknown function (DUF4129) AMQ28_02625 PF11992 Domain of unknown function (DUF3488) AMQ28_02625 PF01841 Transglutaminase-like superfamily AMQ28_02635 PF17863 AAA lid domain AMQ28_02635 PF07726 ATPase family associated with various cellular activities (AAA) AMQ28_02640 PF04328 Selenoprotein, putative AMQ28_02645 PF02554 Carbon starvation protein CstA AMQ28_02645 PF13722 5TM C-terminal transporter carbon starvation CstA AMQ28_02650 PF08207 Elongation factor P (EF-P) KOW-like domain AMQ28_02650 PF01132 Elongation factor P (EF-P) OB domain AMQ28_02650 PF09285 Elongation factor P, C-terminal AMQ28_02655 PF04055 Radical SAM superfamily AMQ28_02670 PF01197 Ribosomal protein L31 AMQ28_02675 PF13593 SBF-like CPA transporter family (DUF4137) AMQ28_02680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMQ28_02685 PF07690 Major Facilitator Superfamily AMQ28_02690 PF05362 Lon protease (S16) C-terminal proteolytic domain AMQ28_02690 PF13654 AAA domain AMQ28_02695 PF00462 Glutaredoxin AMQ28_02700 PF00202 Aminotransferase class-III AMQ28_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_02705 PF03466 LysR substrate binding domain AMQ28_02710 PF01551 Peptidase family M23 AMQ28_02710 PF01476 LysM domain AMQ28_02715 PF01975 Survival protein SurE AMQ28_02730 PF07943 Penicillin-binding protein 5, C-terminal domain AMQ28_02730 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_02735 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_02740 PF00293 NUDIX domain AMQ28_02750 PF04356 Protein of unknown function (DUF489) AMQ28_02755 PF00206 Lyase AMQ28_02755 PF08328 Adenylosuccinate lyase C-terminal AMQ28_02770 PF01343 Peptidase family S49 AMQ28_02770 PF08496 Peptidase family S49 N-terminal AMQ28_02775 PF00005 ABC transporter AMQ28_02780 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_02785 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_02790 PF12849 PBP superfamily domain AMQ28_02795 PF07690 Major Facilitator Superfamily AMQ28_02800 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMQ28_02805 PF00202 Aminotransferase class-III AMQ28_02815 PF01569 PAP2 superfamily AMQ28_02820 PF00696 Amino acid kinase family AMQ28_02820 PF01472 PUA domain AMQ28_02825 PF01018 GTP1/OBG AMQ28_02825 PF01926 50S ribosome-binding GTPase AMQ28_02830 PF01638 HxlR-like helix-turn-helix AMQ28_02835 PF05368 NmrA-like family AMQ28_02850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMQ28_02850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_02855 PF00892 EamA-like transporter family AMQ28_02865 PF00271 Helicase conserved C-terminal domain AMQ28_02865 PF04851 Type III restriction enzyme, res subunit AMQ28_02865 PF02151 UvrB/uvrC motif AMQ28_02865 PF17757 UvrB interaction domain AMQ28_02865 PF12344 Ultra-violet resistance protein B AMQ28_02895 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMQ28_02900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_02905 PF04055 Radical SAM superfamily AMQ28_02910 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMQ28_02915 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMQ28_02920 PF11967 Recombination protein O N terminal AMQ28_02920 PF02565 Recombination protein O C terminal AMQ28_02930 PF01926 50S ribosome-binding GTPase AMQ28_02930 PF07650 KH domain AMQ28_02935 PF14622 Ribonuclease-III-like AMQ28_02935 PF00035 Double-stranded RNA binding motif AMQ28_02945 PF10502 Signal peptidase, peptidase S26 AMQ28_02950 PF00679 Elongation factor G C-terminus AMQ28_02950 PF00009 Elongation factor Tu GTP binding domain AMQ28_02950 PF03144 Elongation factor Tu domain 2 AMQ28_02950 PF06421 GTP-binding protein LepA C-terminus AMQ28_02960 PF13180 PDZ domain AMQ28_02965 PF02910 Fumarate reductase flavoprotein C-term AMQ28_02965 PF00890 FAD binding domain AMQ28_02975 PF02223 Thymidylate kinase AMQ28_02980 PF02618 YceG-like family AMQ28_03000 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_03005 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_03010 PF00005 ABC transporter AMQ28_03010 PF12857 TOBE-like domain AMQ28_03015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03015 PF03466 LysR substrate binding domain AMQ28_03025 PF14602 Hexapeptide repeat of succinyl-transferase AMQ28_03025 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_03025 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMQ28_03030 PF04055 Radical SAM superfamily AMQ28_03035 PF06508 Queuosine biosynthesis protein QueC AMQ28_03050 PF00578 AhpC/TSA family AMQ28_03055 PF04264 YceI-like domain AMQ28_03060 PF00293 NUDIX domain AMQ28_03060 PF01467 Cytidylyltransferase-like AMQ28_03065 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_03070 PF00881 Nitroreductase family AMQ28_03075 PF01784 NIF3 (NGG1p interacting factor 3) AMQ28_03080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_03080 PF09317 Domain of unknown function (DUF1974) AMQ28_03080 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_03080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_03085 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMQ28_03085 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMQ28_03085 PF02769 AIR synthase related protein, C-terminal domain AMQ28_03095 PF01966 HD domain AMQ28_03100 PF07499 RuvA, C-terminal domain AMQ28_03100 PF01330 RuvA N terminal domain AMQ28_03105 PF17864 RuvB AAA lid domain AMQ28_03105 PF05491 RuvB C-terminal winged helix domain AMQ28_03105 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMQ28_03120 PF03061 Thioesterase superfamily AMQ28_03125 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_03130 PF02472 Biopolymer transport protein ExbD/TolR AMQ28_03140 PF04052 TolB amino-terminal domain AMQ28_03140 PF07676 WD40-like Beta Propeller Repeat AMQ28_03145 PF00691 OmpA family AMQ28_03155 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMQ28_03160 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMQ28_03160 PF00588 SpoU rRNA Methylase family AMQ28_03190 PF00308 Bacterial dnaA protein AMQ28_03190 PF11638 DnaA N-terminal domain AMQ28_03190 PF08299 Bacterial dnaA protein helix-turn-helix AMQ28_03195 PF01594 AI-2E family transporter AMQ28_03200 PF02769 AIR synthase related protein, C-terminal domain AMQ28_03200 PF00586 AIR synthase related protein, N-terminal domain AMQ28_03205 PF00551 Formyl transferase AMQ28_03215 PF06965 Na+/H+ antiporter 1 AMQ28_03215 PF01343 Peptidase family S49 AMQ28_03225 PF03772 Competence protein AMQ28_03225 PF00753 Metallo-beta-lactamase superfamily AMQ28_03225 PF13567 Domain of unknown function (DUF4131) AMQ28_03230 PF00005 ABC transporter AMQ28_03235 PF12704 MacB-like periplasmic core domain AMQ28_03235 PF02687 FtsX-like permease family AMQ28_03245 PF00892 EamA-like transporter family AMQ28_03250 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMQ28_03260 PF00266 Aminotransferase class-V AMQ28_03270 PF13533 Biotin-lipoyl like AMQ28_03285 PF00375 Sodium:dicarboxylate symporter family AMQ28_03290 PF03989 DNA gyrase C-terminal domain, beta-propeller AMQ28_03290 PF00521 DNA gyrase/topoisomerase IV, subunit A AMQ28_03295 PF00766 Electron transfer flavoprotein FAD-binding domain AMQ28_03295 PF01012 Electron transfer flavoprotein domain AMQ28_03300 PF01012 Electron transfer flavoprotein domain AMQ28_03305 PF01810 LysE type translocator AMQ28_03310 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_03310 PF13359 DDE superfamily endonuclease AMQ28_03320 PF01037 Lrp/AsnC ligand binding domain AMQ28_03330 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_03330 PF00589 Phage integrase family AMQ28_03340 PF01678 Diaminopimelate epimerase AMQ28_03345 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMQ28_03345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMQ28_03355 PF00324 Amino acid permease AMQ28_03360 PF18073 Rubredoxin metal binding domain AMQ28_03405 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMQ28_03405 PF05221 S-adenosyl-L-homocysteine hydrolase AMQ28_03410 PF02219 Methylenetetrahydrofolate reductase AMQ28_03415 PF04452 RNA methyltransferase AMQ28_03420 PF00563 EAL domain AMQ28_03420 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_03420 PF00498 FHA domain AMQ28_03425 PF00390 Malic enzyme, N-terminal domain AMQ28_03425 PF03949 Malic enzyme, NAD binding domain AMQ28_03425 PF01515 Phosphate acetyl/butaryl transferase AMQ28_03430 PF01743 Poly A polymerase head domain AMQ28_03430 PF12627 Probable RNA and SrmB- binding site of polymerase A AMQ28_03435 PF00152 tRNA synthetases class II (D, K and N) AMQ28_03440 PF11890 Domain of unknown function (DUF3410) AMQ28_03440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_03440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_03445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_03445 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_03445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_03450 PF03466 LysR substrate binding domain AMQ28_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03455 PF00106 short chain dehydrogenase AMQ28_03470 PF03459 TOBE domain AMQ28_03470 PF00005 ABC transporter AMQ28_03475 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_03485 PF03453 MoeA N-terminal region (domain I and II) AMQ28_03485 PF03454 MoeA C-terminal region (domain IV) AMQ28_03485 PF00994 Probable molybdopterin binding domain AMQ28_03490 PF01967 MoaC family AMQ28_03490 PF00994 Probable molybdopterin binding domain AMQ28_03500 PF02391 MoaE protein AMQ28_03510 PF04055 Radical SAM superfamily AMQ28_03510 PF06463 Molybdenum Cofactor Synthesis C AMQ28_03515 PF12804 MobA-like NTP transferase domain AMQ28_03520 PF02634 FdhD/NarQ family AMQ28_03525 PF00384 Molybdopterin oxidoreductase AMQ28_03545 PF03466 LysR substrate binding domain AMQ28_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03550 PF03466 LysR substrate binding domain AMQ28_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03555 PF02447 GntP family permease AMQ28_03560 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_03565 PF01638 HxlR-like helix-turn-helix AMQ28_03570 PF01609 Transposase DDE domain AMQ28_03570 PF13006 Insertion element 4 transposase N-terminal AMQ28_03575 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_03575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_03585 PF00561 alpha/beta hydrolase fold AMQ28_03590 PF00561 alpha/beta hydrolase fold AMQ28_03595 PF00106 short chain dehydrogenase AMQ28_03600 PF00698 Acyl transferase domain AMQ28_03600 PF00109 Beta-ketoacyl synthase, N-terminal domain AMQ28_03600 PF08659 KR domain AMQ28_03600 PF02801 Beta-ketoacyl synthase, C-terminal domain AMQ28_03600 PF14765 Polyketide synthase dehydratase AMQ28_03600 PF00550 Phosphopantetheine attachment site AMQ28_03600 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_03600 PF16197 Ketoacyl-synthetase C-terminal extension AMQ28_03610 PF03449 Transcription elongation factor, N-terminal AMQ28_03610 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_03615 PF01464 Transglycosylase SLT domain AMQ28_03615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMQ28_03625 PF01171 PP-loop family AMQ28_03630 PF10145 Phage-related minor tail protein AMQ28_03630 PF01551 Peptidase family M23 AMQ28_03630 PF01464 Transglycosylase SLT domain AMQ28_03635 PF01435 Peptidase family M48 AMQ28_03650 PF01769 Divalent cation transporter AMQ28_03650 PF00571 CBS domain AMQ28_03650 PF03448 MgtE intracellular N domain AMQ28_03655 PF00873 AcrB/AcrD/AcrF family AMQ28_03660 PF03009 Glycerophosphoryl diester phosphodiesterase family AMQ28_03665 PF00463 Isocitrate lyase family AMQ28_03670 PF03466 LysR substrate binding domain AMQ28_03670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03675 PF00571 CBS domain AMQ28_03675 PF03471 Transporter associated domain AMQ28_03675 PF01595 Cyclin M transmembrane N-terminal domain AMQ28_03680 PF03600 Citrate transporter AMQ28_03695 PF16655 PhoD-like phosphatase, N-terminal domain AMQ28_03695 PF09423 PhoD-like phosphatase AMQ28_03710 PF00809 Pterin binding enzyme AMQ28_03715 PF17862 AAA+ lid domain AMQ28_03715 PF06480 FtsH Extracellular AMQ28_03715 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_03715 PF01434 Peptidase family M41 AMQ28_03720 PF01728 FtsJ-like methyltransferase AMQ28_03725 PF01985 CRS1 / YhbY (CRM) domain AMQ28_03740 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMQ28_03740 PF00117 Glutamine amidotransferase class-I AMQ28_03745 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMQ28_03745 PF02142 MGS-like domain AMQ28_03745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_03750 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_03750 PF03449 Transcription elongation factor, N-terminal AMQ28_03760 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_03770 PF00582 Universal stress protein family AMQ28_03775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMQ28_03780 PF00999 Sodium/hydrogen exchanger family AMQ28_03790 PF04228 Putative neutral zinc metallopeptidase AMQ28_03795 PF05661 Protein of unknown function (DUF808) AMQ28_03800 PF00579 tRNA synthetases class I (W and Y) AMQ28_03805 PF14052 Capsule assembly protein Wzi AMQ28_03810 PF01336 OB-fold nucleic acid binding domain AMQ28_03810 PF00152 tRNA synthetases class II (D, K and N) AMQ28_03820 PF00156 Phosphoribosyl transferase domain AMQ28_03825 PF00301 Rubredoxin AMQ28_03830 PF18113 Rubredoxin binding C-terminal domain AMQ28_03830 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_03835 PF00561 alpha/beta hydrolase fold AMQ28_03840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_03840 PF03466 LysR substrate binding domain AMQ28_03845 PF13090 Polyphosphate kinase C-terminal domain 2 AMQ28_03845 PF02503 Polyphosphate kinase middle domain AMQ28_03845 PF13089 Polyphosphate kinase N-terminal domain AMQ28_03845 PF17941 Polyphosphate kinase C-terminal domain 1 AMQ28_03850 PF00912 Transglycosylase AMQ28_03855 PF01694 Rhomboid family AMQ28_03865 PF00005 ABC transporter AMQ28_03870 PF13472 GDSL-like Lipase/Acylhydrolase family AMQ28_03875 PF00484 Carbonic anhydrase AMQ28_03880 PF00561 alpha/beta hydrolase fold AMQ28_03890 PF00593 TonB dependent receptor AMQ28_03890 PF07715 TonB-dependent Receptor Plug Domain AMQ28_03895 PF01106 NifU-like domain AMQ28_03895 PF01521 Iron-sulphur cluster biosynthesis AMQ28_03910 PF01384 Phosphate transporter family AMQ28_03915 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMQ28_03915 PF00809 Pterin binding enzyme AMQ28_03915 PF02607 B12 binding domain AMQ28_03915 PF02574 Homocysteine S-methyltransferase AMQ28_03915 PF02310 B12 binding domain AMQ28_03920 PF01327 Polypeptide deformylase AMQ28_03960 PF00535 Glycosyl transferase family 2 AMQ28_03985 PF13673 Acetyltransferase (GNAT) domain AMQ28_03990 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_03995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_04000 PF07152 YaeQ protein AMQ28_04005 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMQ28_04005 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMQ28_04015 PF03061 Thioesterase superfamily AMQ28_04020 PF01734 Patatin-like phospholipase AMQ28_04030 PF03616 Sodium/glutamate symporter AMQ28_04040 PF00881 Nitroreductase family AMQ28_04045 PF07690 Major Facilitator Superfamily AMQ28_04050 PF12805 FUSC-like inner membrane protein yccS AMQ28_04060 PF00175 Oxidoreductase NAD-binding domain AMQ28_04060 PF00258 Flavodoxin AMQ28_04060 PF00667 FAD binding domain AMQ28_04115 PF03734 L,D-transpeptidase catalytic domain AMQ28_04115 PF17969 L,D-transpeptidase C-terminal domain AMQ28_04120 PF04304 Protein of unknown function (DUF454) AMQ28_04135 PF07687 Peptidase dimerisation domain AMQ28_04135 PF01546 Peptidase family M20/M25/M40 AMQ28_04145 PF00072 Response regulator receiver domain AMQ28_04145 PF01584 CheW-like domain AMQ28_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_04145 PF01627 Hpt domain AMQ28_04155 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMQ28_04155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMQ28_04160 PF01584 CheW-like domain AMQ28_04165 PF00072 Response regulator receiver domain AMQ28_04170 PF00072 Response regulator receiver domain AMQ28_04185 PF00873 AcrB/AcrD/AcrF family AMQ28_04190 PF04073 Aminoacyl-tRNA editing domain AMQ28_04190 PF03129 Anticodon binding domain AMQ28_04190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_04215 PF00692 dUTPase AMQ28_04230 PF10609 NUBPL iron-transfer P-loop NTPase AMQ28_04250 PF13356 Arm DNA-binding domain AMQ28_04250 PF00589 Phage integrase family AMQ28_04330 PF13359 DDE superfamily endonuclease AMQ28_04330 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_04335 PF13289 SIR2-like domain AMQ28_04340 PF00436 Single-strand binding protein family AMQ28_04370 PF00872 Transposase, Mutator family AMQ28_04390 PF07690 Major Facilitator Superfamily AMQ28_04395 PF00529 HlyD membrane-fusion protein of T1SS AMQ28_04395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_04400 PF03061 Thioesterase superfamily AMQ28_04405 PF00490 Delta-aminolevulinic acid dehydratase AMQ28_04410 PF01266 FAD dependent oxidoreductase AMQ28_04415 PF01370 NAD dependent epimerase/dehydratase family AMQ28_04415 PF08338 Domain of unknown function (DUF1731) AMQ28_04450 PF13533 Biotin-lipoyl like AMQ28_04455 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_04465 PF05552 Conserved TM helix AMQ28_04480 PF00970 Oxidoreductase FAD-binding domain AMQ28_04480 PF00175 Oxidoreductase NAD-binding domain AMQ28_04485 PF03466 LysR substrate binding domain AMQ28_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_04505 PF00361 Proton-conducting membrane transporter AMQ28_04510 PF00361 Proton-conducting membrane transporter AMQ28_04515 PF00361 Proton-conducting membrane transporter AMQ28_04515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMQ28_04520 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMQ28_04525 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMQ28_04530 PF12838 4Fe-4S dicluster domain AMQ28_04535 PF00146 NADH dehydrogenase AMQ28_04540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_04540 PF00384 Molybdopterin oxidoreductase AMQ28_04540 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMQ28_04545 PF10531 SLBB domain AMQ28_04545 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMQ28_04545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMQ28_04555 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMQ28_04555 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMQ28_04560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMQ28_04565 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMQ28_04570 PF13737 Transposase DDE domain AMQ28_04580 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_04580 PF00672 HAMP domain AMQ28_04585 PF00486 Transcriptional regulatory protein, C terminal AMQ28_04585 PF00072 Response regulator receiver domain AMQ28_04590 PF02867 Ribonucleotide reductase, barrel domain AMQ28_04590 PF00317 Ribonucleotide reductase, all-alpha domain AMQ28_04590 PF03477 ATP cone domain AMQ28_04595 PF00268 Ribonucleotide reductase, small chain AMQ28_04600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_04600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_04605 PF07690 Major Facilitator Superfamily AMQ28_04610 PF01370 NAD dependent epimerase/dehydratase family AMQ28_04615 PF03466 LysR substrate binding domain AMQ28_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_04625 PF00920 Dehydratase family AMQ28_04630 PF00171 Aldehyde dehydrogenase family AMQ28_04640 PF10282 Lactonase, 7-bladed beta-propeller AMQ28_04645 PF00171 Aldehyde dehydrogenase family AMQ28_04655 PF07690 Major Facilitator Superfamily AMQ28_04660 PF00920 Dehydratase family AMQ28_04665 PF00392 Bacterial regulatory proteins, gntR family AMQ28_04665 PF07729 FCD domain AMQ28_04670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_04670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_04675 PF04972 BON domain AMQ28_04675 PF01476 LysM domain AMQ28_04680 PF13505 Outer membrane protein beta-barrel domain AMQ28_04680 PF00691 OmpA family AMQ28_04690 PF00108 Thiolase, N-terminal domain AMQ28_04690 PF02803 Thiolase, C-terminal domain AMQ28_04705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_04705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_04710 PF01011 PQQ enzyme repeat AMQ28_04715 PF04966 Carbohydrate-selective porin, OprB family AMQ28_04720 PF02515 CoA-transferase family III AMQ28_04725 PF02311 AraC-like ligand binding domain AMQ28_04725 PF12833 Helix-turn-helix domain AMQ28_04730 PF00108 Thiolase, N-terminal domain AMQ28_04730 PF02803 Thiolase, C-terminal domain AMQ28_04735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMQ28_04735 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_04735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMQ28_04745 PF13673 Acetyltransferase (GNAT) domain AMQ28_04750 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMQ28_04750 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMQ28_04750 PF06827 Zinc finger found in FPG and IleRS AMQ28_04760 PF01741 Large-conductance mechanosensitive channel, MscL AMQ28_04770 PF00860 Permease family AMQ28_04775 PF08468 Methyltransferase small domain N-terminal AMQ28_04775 PF05175 Methyltransferase small domain AMQ28_04780 PF00324 Amino acid permease AMQ28_04785 PF00550 Phosphopantetheine attachment site AMQ28_04795 PF00698 Acyl transferase domain AMQ28_04800 PF01783 Ribosomal L32p protein family AMQ28_04805 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMQ28_04810 PF04315 Elongation factor P hydroxylase AMQ28_04815 PF01300 Telomere recombination AMQ28_04825 PF02616 Segregation and condensation protein ScpA AMQ28_04830 PF04079 Segregation and condensation complex subunit ScpB AMQ28_04845 PF08241 Methyltransferase domain AMQ28_04850 PF00155 Aminotransferase class I and II AMQ28_04855 PF00202 Aminotransferase class-III AMQ28_04855 PF06968 Biotin and Thiamin Synthesis associated domain AMQ28_04855 PF04055 Radical SAM superfamily AMQ28_04860 PF12697 Alpha/beta hydrolase family AMQ28_04860 PF08241 Methyltransferase domain AMQ28_04865 PF00578 AhpC/TSA family AMQ28_04870 PF00210 Ferritin-like domain AMQ28_04890 PF13358 DDE superfamily endonuclease AMQ28_04895 PF00795 Carbon-nitrogen hydrolase AMQ28_04910 PF01527 Transposase AMQ28_04915 PF13333 Integrase core domain AMQ28_04915 PF00665 Integrase core domain AMQ28_04915 PF13276 HTH-like domain AMQ28_04925 PF01381 Helix-turn-helix AMQ28_04935 PF03120 NAD-dependent DNA ligase OB-fold domain AMQ28_04935 PF01653 NAD-dependent DNA ligase adenylation domain AMQ28_04935 PF00533 BRCA1 C Terminus (BRCT) domain AMQ28_04950 PF02463 RecF/RecN/SMC N terminal domain AMQ28_04950 PF06470 SMC proteins Flexible Hinge Domain AMQ28_04960 PF01925 Sulfite exporter TauE/SafE AMQ28_04970 PF03309 Type III pantothenate kinase AMQ28_04975 PF06821 Serine hydrolase AMQ28_04980 PF02881 SRP54-type protein, helical bundle domain AMQ28_04980 PF02978 Signal peptide binding domain AMQ28_04980 PF00448 SRP54-type protein, GTPase domain AMQ28_05010 PF01207 Dihydrouridine synthase (Dus) AMQ28_05015 PF08378 Nuclease-related domain AMQ28_05020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMQ28_05020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMQ28_05025 PF00893 Small Multidrug Resistance protein AMQ28_05030 PF05275 Copper resistance protein B precursor (CopB) AMQ28_05035 PF00394 Multicopper oxidase AMQ28_05035 PF07731 Multicopper oxidase AMQ28_05035 PF07732 Multicopper oxidase AMQ28_05045 PF00834 Ribulose-phosphate 3 epimerase family AMQ28_05055 PF00756 Putative esterase AMQ28_05065 PF04445 Putative SAM-dependent methyltransferase AMQ28_05070 PF02673 Bacitracin resistance protein BacA AMQ28_05075 PF00814 Glycoprotease family AMQ28_05080 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_05085 PF00293 NUDIX domain AMQ28_05125 PF00425 chorismate binding enzyme AMQ28_05125 PF04715 Anthranilate synthase component I, N terminal region AMQ28_05130 PF00155 Aminotransferase class I and II AMQ28_05135 PF00815 Histidinol dehydrogenase AMQ28_05140 PF01634 ATP phosphoribosyltransferase AMQ28_05145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMQ28_05150 PF01722 BolA-like protein AMQ28_05155 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMQ28_05160 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMQ28_05160 PF04963 Sigma-54 factor, core binding domain AMQ28_05160 PF04552 Sigma-54, DNA binding domain AMQ28_05205 PF00795 Carbon-nitrogen hydrolase AMQ28_05210 PF02566 OsmC-like protein AMQ28_05215 PF00437 Type II/IV secretion system protein AMQ28_05235 PF00476 DNA polymerase family A AMQ28_05235 PF01367 5'-3' exonuclease, C-terminal SAM fold AMQ28_05235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMQ28_05235 PF01612 3'-5' exonuclease AMQ28_05240 PF02325 YGGT family AMQ28_05245 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMQ28_05245 PF03807 NADP oxidoreductase coenzyme F420-dependent AMQ28_05250 PF11734 TilS substrate C-terminal domain AMQ28_05250 PF09179 TilS substrate binding domain AMQ28_05250 PF01171 PP-loop family AMQ28_05255 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMQ28_05260 PF02541 Ppx/GppA phosphatase family AMQ28_05265 PF00085 Thioredoxin AMQ28_05270 PF07497 Rho termination factor, RNA-binding domain AMQ28_05270 PF07498 Rho termination factor, N-terminal domain AMQ28_05270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_05280 PF00216 Bacterial DNA-binding protein AMQ28_05285 PF03483 B3/4 domain AMQ28_05285 PF03147 Ferredoxin-fold anticodon binding domain AMQ28_05285 PF01588 Putative tRNA binding domain AMQ28_05285 PF03484 tRNA synthetase B5 domain AMQ28_05285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMQ28_05290 PF01409 tRNA synthetases class II core domain (F) AMQ28_05290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMQ28_05305 PF00899 ThiF family AMQ28_05310 PF00929 Exonuclease AMQ28_05315 PF03193 RsgA GTPase AMQ28_05325 PF00462 Glutaredoxin AMQ28_05330 PF02556 Preprotein translocase subunit SecB AMQ28_05345 PF01026 TatD related DNase AMQ28_05360 PF16658 Class II release factor RF3, C-terminal domain AMQ28_05360 PF00009 Elongation factor Tu GTP binding domain AMQ28_05360 PF03144 Elongation factor Tu domain 2 AMQ28_05375 PF04851 Type III restriction enzyme, res subunit AMQ28_05375 PF08774 VRR-NUC domain AMQ28_05380 PF18273 Type III R-M EcoP15I C-terminal domain AMQ28_05380 PF01555 DNA methylase AMQ28_05390 PF00176 SNF2 family N-terminal domain AMQ28_05390 PF00271 Helicase conserved C-terminal domain AMQ28_05445 PF03707 Bacterial signalling protein N terminal repeat AMQ28_05445 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_05445 PF00563 EAL domain AMQ28_05455 PF00595 PDZ domain AMQ28_05455 PF11818 C-terminal domain of tail specific protease (DUF3340) AMQ28_05455 PF17804 Tail specific protease N-terminal domain AMQ28_05455 PF03572 Peptidase family S41 AMQ28_05460 PF00933 Glycosyl hydrolase family 3 N terminal domain AMQ28_05470 PF00561 alpha/beta hydrolase fold AMQ28_05475 PF00171 Aldehyde dehydrogenase family AMQ28_05485 PF00871 Acetokinase family AMQ28_05490 PF01515 Phosphate acetyl/butaryl transferase AMQ28_05490 PF07085 DRTGG domain AMQ28_05495 PF13649 Methyltransferase domain AMQ28_05500 PF05683 Fumarase C-terminus AMQ28_05500 PF05681 Fumarate hydratase (Fumerase) AMQ28_05505 PF13276 HTH-like domain AMQ28_05505 PF00665 Integrase core domain AMQ28_05505 PF13333 Integrase core domain AMQ28_05520 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_05520 PF06689 ClpX C4-type zinc finger AMQ28_05520 PF07724 AAA domain (Cdc48 subfamily) AMQ28_05525 PF00574 Clp protease AMQ28_05530 PF05697 Bacterial trigger factor protein (TF) AMQ28_05530 PF05698 Bacterial trigger factor protein (TF) C-terminus AMQ28_05530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_05535 PF07715 TonB-dependent Receptor Plug Domain AMQ28_05535 PF00593 TonB dependent receptor AMQ28_05540 PF07715 TonB-dependent Receptor Plug Domain AMQ28_05540 PF00593 TonB dependent receptor AMQ28_05545 PF13640 2OG-Fe(II) oxygenase superfamily AMQ28_05545 PF18331 PKHD-type hydroxylase C-terminal domain AMQ28_05550 PF00593 TonB dependent receptor AMQ28_05550 PF07715 TonB-dependent Receptor Plug Domain AMQ28_05555 PF18331 PKHD-type hydroxylase C-terminal domain AMQ28_05555 PF13640 2OG-Fe(II) oxygenase superfamily AMQ28_05560 PF01070 FMN-dependent dehydrogenase AMQ28_05565 PF08502 LeuA allosteric (dimerisation) domain AMQ28_05565 PF00682 HMGL-like AMQ28_05570 PF00561 alpha/beta hydrolase fold AMQ28_05575 PF00561 alpha/beta hydrolase fold AMQ28_05575 PF07021 Methionine biosynthesis protein MetW AMQ28_05585 PF01725 Ham1 family AMQ28_05595 PF02416 mttA/Hcf106 family AMQ28_05605 PF00902 Sec-independent protein translocase protein (TatC) AMQ28_05620 PF01790 Prolipoprotein diacylglyceryl transferase AMQ28_05635 PF00453 Ribosomal protein L20 AMQ28_05640 PF01632 Ribosomal protein L35 AMQ28_05650 PF09335 SNARE associated Golgi protein AMQ28_05660 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_05660 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_05665 PF00011 Hsp20/alpha crystallin family AMQ28_05675 PF00707 Translation initiation factor IF-3, C-terminal domain AMQ28_05675 PF05198 Translation initiation factor IF-3, N-terminal domain AMQ28_05680 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_05680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_05680 PF02824 TGS domain AMQ28_05680 PF03129 Anticodon binding domain AMQ28_05685 PF13193 AMP-binding enzyme C-terminal domain AMQ28_05685 PF00501 AMP-binding enzyme AMQ28_05690 PF04751 Protein of unknown function (DUF615) AMQ28_05695 PF00381 PTS HPr component phosphorylation site AMQ28_05700 PF03668 P-loop ATPase protein family AMQ28_05705 PF02569 Pantoate-beta-alanine ligase AMQ28_05710 PF02548 Ketopantoate hydroxymethyltransferase AMQ28_05715 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMQ28_05720 PF12626 Polymerase A arginine-rich C-terminus AMQ28_05720 PF12627 Probable RNA and SrmB- binding site of polymerase A AMQ28_05720 PF01743 Poly A polymerase head domain AMQ28_05725 PF10531 SLBB domain AMQ28_05730 PF03819 MazG nucleotide pyrophosphohydrolase domain AMQ28_05735 PF01648 4'-phosphopantetheinyl transferase superfamily AMQ28_05740 PF01926 50S ribosome-binding GTPase AMQ28_05740 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMQ28_05745 PF13360 PQQ-like domain AMQ28_05745 PF01011 PQQ enzyme repeat AMQ28_05755 PF13393 Histidyl-tRNA synthetase AMQ28_05755 PF03129 Anticodon binding domain AMQ28_05760 PF04551 GcpE protein AMQ28_05765 PF13464 Domain of unknown function (DUF4115) AMQ28_05775 PF04055 Radical SAM superfamily AMQ28_05780 PF00334 Nucleoside diphosphate kinase AMQ28_05785 PF04384 Iron-sulphur cluster assembly AMQ28_05790 PF01569 PAP2 superfamily AMQ28_05795 PF13439 Glycosyltransferase Family 4 AMQ28_05795 PF00534 Glycosyl transferases group 1 AMQ28_05825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMQ28_05825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMQ28_05830 PF10369 Small subunit of acetolactate synthase AMQ28_05835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMQ28_05835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMQ28_05835 PF00205 Thiamine pyrophosphate enzyme, central domain AMQ28_05845 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_05845 PF08264 Anticodon-binding domain of tRNA AMQ28_05845 PF13603 Leucyl-tRNA synthetase, Domain 2 AMQ28_05845 PF09334 tRNA synthetases class I (M) AMQ28_05860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_05865 PF00005 ABC transporter AMQ28_05865 PF02687 FtsX-like permease family AMQ28_05865 PF12704 MacB-like periplasmic core domain AMQ28_05870 PF02321 Outer membrane efflux protein AMQ28_05880 PF00303 Thymidylate synthase AMQ28_05885 PF00186 Dihydrofolate reductase AMQ28_05900 PF01625 Peptide methionine sulfoxide reductase AMQ28_05910 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_05920 PF01842 ACT domain AMQ28_05920 PF00551 Formyl transferase AMQ28_05925 PF00440 Bacterial regulatory proteins, tetR family AMQ28_05925 PF08360 QacR-like protein, C-terminal region AMQ28_05930 PF00171 Aldehyde dehydrogenase family AMQ28_05935 PF00830 Ribosomal L28 family AMQ28_05940 PF00471 Ribosomal protein L33 AMQ28_05945 PF02254 TrkA-N domain AMQ28_05945 PF00999 Sodium/hydrogen exchanger family AMQ28_05970 PF00580 UvrD/REP helicase N-terminal domain AMQ28_05970 PF13361 UvrD-like helicase C-terminal domain AMQ28_05975 PF02595 Glycerate kinase family AMQ28_05990 PF08272 Topoisomerase I zinc-ribbon-like AMQ28_05990 PF01396 Topoisomerase DNA binding C4 zinc finger AMQ28_05990 PF01751 Toprim domain AMQ28_05990 PF01131 DNA topoisomerase AMQ28_06005 PF04102 SlyX AMQ28_06015 PF03279 Bacterial lipid A biosynthesis acyltransferase AMQ28_06030 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMQ28_06030 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMQ28_06050 PF01416 tRNA pseudouridine synthase AMQ28_06060 PF01176 Translation initiation factor 1A / IF-1 AMQ28_06075 PF00180 Isocitrate/isopropylmalate dehydrogenase AMQ28_06085 PF00694 Aconitase C-terminal domain AMQ28_06090 PF00330 Aconitase family (aconitate hydratase) AMQ28_06105 PF03466 LysR substrate binding domain AMQ28_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_06115 PF00145 C-5 cytosine-specific DNA methylase AMQ28_06115 PF01381 Helix-turn-helix AMQ28_06120 PF00196 Bacterial regulatory proteins, luxR family AMQ28_06120 PF00072 Response regulator receiver domain AMQ28_06135 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AMQ28_06145 PF13276 HTH-like domain AMQ28_06145 PF00665 Integrase core domain AMQ28_06145 PF13333 Integrase core domain AMQ28_06160 PF00872 Transposase, Mutator family AMQ28_06175 PF00665 Integrase core domain AMQ28_06175 PF13936 Helix-turn-helix domain AMQ28_06190 PF00293 NUDIX domain AMQ28_06195 PF05524 PEP-utilising enzyme, N-terminal AMQ28_06195 PF00391 PEP-utilising enzyme, mobile domain AMQ28_06195 PF01590 GAF domain AMQ28_06195 PF02896 PEP-utilising enzyme, TIM barrel domain AMQ28_06205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_06205 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_06205 PF18158 Adaptive response protein AidB N-terminal domain AMQ28_06215 PF00199 Catalase AMQ28_06215 PF06628 Catalase-related immune-responsive AMQ28_06220 PF12706 Beta-lactamase superfamily domain AMQ28_06230 PF03466 LysR substrate binding domain AMQ28_06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_06240 PF00849 RNA pseudouridylate synthase AMQ28_06240 PF01479 S4 domain AMQ28_06245 PF12111 Polyribonucleotide phosphorylase C terminal AMQ28_06245 PF10150 Ribonuclease E/G family AMQ28_06245 PF00575 S1 RNA binding domain AMQ28_06250 PF13193 AMP-binding enzyme C-terminal domain AMQ28_06250 PF00501 AMP-binding enzyme AMQ28_06275 PF04024 PspC domain AMQ28_06285 PF02091 Glycyl-tRNA synthetase alpha subunit AMQ28_06290 PF02092 Glycyl-tRNA synthetase beta subunit AMQ28_06290 PF05746 DALR anticodon binding domain AMQ28_06315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_06315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_06345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMQ28_06345 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_06355 PF03884 DNA gyrase inhibitor YacG AMQ28_06360 PF00753 Metallo-beta-lactamase superfamily AMQ28_06365 PF00762 Ferrochelatase AMQ28_06375 PF01177 Asp/Glu/Hydantoin racemase AMQ28_06395 PF01206 Sulfurtransferase TusA AMQ28_06400 PF03471 Transporter associated domain AMQ28_06400 PF00571 CBS domain AMQ28_06405 PF00795 Carbon-nitrogen hydrolase AMQ28_06415 PF07963 Prokaryotic N-terminal methylation motif AMQ28_06415 PF08334 Type II secretion system (T2SS), protein G AMQ28_06420 PF00482 Type II secretion system (T2SS), protein F AMQ28_06425 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMQ28_06425 PF18074 Primosomal protein N C-terminal domain AMQ28_06425 PF17764 3′ DNA-binding domain (3′BD) AMQ28_06425 PF00271 Helicase conserved C-terminal domain AMQ28_06425 PF00270 DEAD/DEAH box helicase AMQ28_06430 PF00999 Sodium/hydrogen exchanger family AMQ28_06430 PF02254 TrkA-N domain AMQ28_06435 PF01430 Hsp33 protein AMQ28_06440 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_06440 PF13185 GAF domain AMQ28_06445 PF01556 DnaJ C terminal domain AMQ28_06445 PF00226 DnaJ domain AMQ28_06460 PF01544 CorA-like Mg2+ transporter protein AMQ28_06465 PF00575 S1 RNA binding domain AMQ28_06465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMQ28_06465 PF01138 3' exoribonuclease family, domain 1 AMQ28_06465 PF00013 KH domain AMQ28_06465 PF03725 3' exoribonuclease family, domain 2 AMQ28_06470 PF00312 Ribosomal protein S15 AMQ28_06480 PF13538 UvrD-like helicase C-terminal domain AMQ28_06485 PF13361 UvrD-like helicase C-terminal domain AMQ28_06485 PF00580 UvrD/REP helicase N-terminal domain AMQ28_06485 PF12705 PD-(D/E)XK nuclease superfamily AMQ28_06490 PF17946 RecC C-terminal domain AMQ28_06500 PF03976 Polyphosphate kinase 2 (PPK2) AMQ28_06510 PF01209 ubiE/COQ5 methyltransferase family AMQ28_06520 PF03109 ABC1 family AMQ28_06530 PF01502 Phosphoribosyl-AMP cyclohydrolase AMQ28_06540 PF13244 Domain of unknown function (DUF4040) AMQ28_06540 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMQ28_06540 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMQ28_06540 PF00361 Proton-conducting membrane transporter AMQ28_06545 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMQ28_06550 PF00361 Proton-conducting membrane transporter AMQ28_06560 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMQ28_06570 PF02033 Ribosome-binding factor A AMQ28_06575 PF11987 Translation-initiation factor 2 AMQ28_06575 PF04760 Translation initiation factor IF-2, N-terminal region AMQ28_06575 PF00009 Elongation factor Tu GTP binding domain AMQ28_06575 PF08364 Bacterial translation initiation factor IF-2 associated region AMQ28_06580 PF00575 S1 RNA binding domain AMQ28_06580 PF13184 NusA-like KH domain AMQ28_06580 PF08529 NusA N-terminal domain AMQ28_06585 PF02576 RimP N-terminal domain AMQ28_06585 PF17384 RimP C-terminal SH3 domain AMQ28_06610 PF03840 Preprotein translocase SecG subunit AMQ28_06615 PF00121 Triosephosphate isomerase AMQ28_06620 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMQ28_06620 PF00437 Type II/IV secretion system protein AMQ28_06625 PF00482 Type II secretion system (T2SS), protein F AMQ28_06630 PF06750 Bacterial Peptidase A24 N-terminal domain AMQ28_06630 PF01478 Type IV leader peptidase family AMQ28_06635 PF01121 Dephospho-CoA kinase AMQ28_06645 PF00588 SpoU rRNA Methylase family AMQ28_06645 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMQ28_06650 PF06865 Pyrimidine/purine nucleoside phosphorylase AMQ28_06655 PF02463 RecF/RecN/SMC N terminal domain AMQ28_06660 PF02622 Uncharacterized ACR, COG1678 AMQ28_06665 PF03652 Holliday junction resolvase AMQ28_06670 PF13533 Biotin-lipoyl like AMQ28_06680 PF04632 Fusaric acid resistance protein family AMQ28_06695 PF00664 ABC transporter transmembrane region AMQ28_06695 PF00005 ABC transporter AMQ28_06700 PF01895 PhoU domain AMQ28_06705 PF02321 Outer membrane efflux protein AMQ28_06715 PF01964 Radical SAM ThiC family AMQ28_06715 PF13667 ThiC-associated domain AMQ28_06720 PF00293 NUDIX domain AMQ28_06725 PF00149 Calcineurin-like phosphoesterase AMQ28_06730 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMQ28_06735 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_06740 PF01098 Cell cycle protein AMQ28_06745 PF02875 Mur ligase family, glutamate ligase domain AMQ28_06745 PF08245 Mur ligase middle domain AMQ28_06755 PF07664 Ferrous iron transport protein B C terminus AMQ28_06755 PF02421 Ferrous iron transport protein B AMQ28_06755 PF07670 Nucleoside recognition AMQ28_06765 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_06765 PF00589 Phage integrase family AMQ28_06770 PF10411 Disulfide bond isomerase protein N-terminus AMQ28_06770 PF13098 Thioredoxin-like domain AMQ28_06775 PF03447 Homoserine dehydrogenase, NAD binding domain AMQ28_06775 PF00742 Homoserine dehydrogenase AMQ28_06775 PF01842 ACT domain AMQ28_06780 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_06785 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_06790 PF00072 Response regulator receiver domain AMQ28_06790 PF00196 Bacterial regulatory proteins, luxR family AMQ28_06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_06795 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_06800 PF02954 Bacterial regulatory protein, Fis family AMQ28_06800 PF00072 Response regulator receiver domain AMQ28_06800 PF00158 Sigma-54 interaction domain AMQ28_06805 PF03572 Peptidase family S41 AMQ28_06805 PF00595 PDZ domain AMQ28_06810 PF01676 Metalloenzyme superfamily AMQ28_06810 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMQ28_06815 PF03739 Lipopolysaccharide export system permease LptF/LptG AMQ28_06820 PF03739 Lipopolysaccharide export system permease LptF/LptG AMQ28_06825 PF00883 Cytosol aminopeptidase family, catalytic domain AMQ28_06825 PF02789 Cytosol aminopeptidase family, N-terminal domain AMQ28_06845 PF09335 SNARE associated Golgi protein AMQ28_06850 PF00677 Lumazine binding domain AMQ28_06860 PF01872 RibD C-terminal domain AMQ28_06860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMQ28_06865 PF03477 ATP cone domain AMQ28_06870 PF00909 Ammonium Transporter Family AMQ28_06875 PF00543 Nitrogen regulatory protein P-II AMQ28_06885 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMQ28_06885 PF01078 Magnesium chelatase, subunit ChlI AMQ28_06900 PF03573 outer membrane porin, OprD family AMQ28_06905 PF00719 Inorganic pyrophosphatase AMQ28_06920 PF00501 AMP-binding enzyme AMQ28_06920 PF13193 AMP-binding enzyme C-terminal domain AMQ28_06925 PF03989 DNA gyrase C-terminal domain, beta-propeller AMQ28_06925 PF00521 DNA gyrase/topoisomerase IV, subunit A AMQ28_06930 PF07690 Major Facilitator Superfamily AMQ28_06935 PF03458 UPF0126 domain AMQ28_06940 PF02810 SEC-C motif AMQ28_06945 PF03471 Transporter associated domain AMQ28_06945 PF03741 Integral membrane protein TerC family AMQ28_06950 PF03641 Possible lysine decarboxylase AMQ28_06965 PF07690 Major Facilitator Superfamily AMQ28_06975 PF11799 impB/mucB/samB family C-terminal domain AMQ28_06975 PF00817 impB/mucB/samB family AMQ28_06975 PF11798 IMS family HHH motif AMQ28_06990 PF04055 Radical SAM superfamily AMQ28_06990 PF08497 Radical SAM N-terminal AMQ28_06990 PF11842 Domain of unknown function (DUF3362) AMQ28_06995 PF07690 Major Facilitator Superfamily AMQ28_07025 PF00440 Bacterial regulatory proteins, tetR family AMQ28_07045 PF01327 Polypeptide deformylase AMQ28_07055 PF17782 DprA winged helix domain AMQ28_07055 PF02481 DNA recombination-mediator protein A AMQ28_07060 PF01300 Telomere recombination AMQ28_07065 PF00892 EamA-like transporter family AMQ28_07080 PF00255 Glutathione peroxidase AMQ28_07090 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_07090 PF00107 Zinc-binding dehydrogenase AMQ28_07105 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMQ28_07110 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMQ28_07110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_07115 PF00231 ATP synthase AMQ28_07120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_07120 PF00306 ATP synthase alpha/beta chain, C terminal domain AMQ28_07120 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMQ28_07125 PF00213 ATP synthase delta (OSCP) subunit AMQ28_07130 PF00430 ATP synthase B/B' CF(0) AMQ28_07135 PF00137 ATP synthase subunit C AMQ28_07140 PF00119 ATP synthase A chain AMQ28_07160 PF00005 ABC transporter AMQ28_07165 PF00950 ABC 3 transport family AMQ28_07170 PF01810 LysE type translocator AMQ28_07175 PF04261 Dyp-type peroxidase family AMQ28_07180 PF00155 Aminotransferase class I and II AMQ28_07185 PF01554 MatE AMQ28_07200 PF00106 short chain dehydrogenase AMQ28_07210 PF00486 Transcriptional regulatory protein, C terminal AMQ28_07210 PF00072 Response regulator receiver domain AMQ28_07215 PF00989 PAS fold AMQ28_07215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_07215 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_07215 PF11808 Phosphate regulon sensor protein PhoR AMQ28_07225 PF05726 Pirin C-terminal cupin domain AMQ28_07225 PF02678 Pirin AMQ28_07230 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_07230 PF00072 Response regulator receiver domain AMQ28_07235 PF04471 Restriction endonuclease AMQ28_07235 PF14338 Mrr N-terminal domain AMQ28_07240 PF00117 Glutamine amidotransferase class-I AMQ28_07240 PF00958 GMP synthase C terminal domain AMQ28_07240 PF02540 NAD synthase AMQ28_07250 PF07681 DoxX AMQ28_07255 PF09335 SNARE associated Golgi protein AMQ28_07270 PF13614 AAA domain AMQ28_07280 PF01722 BolA-like protein AMQ28_07315 PF07120 Protein of unknown function (DUF1376) AMQ28_07320 PF01695 IstB-like ATP binding protein AMQ28_07330 PF00293 NUDIX domain AMQ28_07395 PF13276 HTH-like domain AMQ28_07395 PF00665 Integrase core domain AMQ28_07395 PF13333 Integrase core domain AMQ28_07405 PF12419 SNF2 Helicase protein AMQ28_07405 PF00271 Helicase conserved C-terminal domain AMQ28_07405 PF00176 SNF2 family N-terminal domain AMQ28_07425 PF13276 HTH-like domain AMQ28_07425 PF00665 Integrase core domain AMQ28_07425 PF13333 Integrase core domain AMQ28_07440 PF11799 impB/mucB/samB family C-terminal domain AMQ28_07440 PF00817 impB/mucB/samB family AMQ28_07440 PF13438 Domain of unknown function (DUF4113) AMQ28_07445 PF13610 DDE domain AMQ28_07460 PF05194 UreE urease accessory protein, C-terminal domain AMQ28_07460 PF02814 UreE urease accessory protein, N-terminal domain AMQ28_07465 PF01730 UreF AMQ28_07470 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMQ28_07480 PF01774 UreD urease accessory protein AMQ28_07485 PF00547 Urease, gamma subunit AMQ28_07490 PF00699 Urease beta subunit AMQ28_07495 PF01979 Amidohydrolase family AMQ28_07495 PF00449 Urease alpha-subunit, N-terminal domain AMQ28_07505 PF00753 Metallo-beta-lactamase superfamily AMQ28_07515 PF04143 Sulphur transport AMQ28_07525 PF13098 Thioredoxin-like domain AMQ28_07530 PF08534 Redoxin AMQ28_07535 PF02683 Cytochrome C biogenesis protein transmembrane region AMQ28_07535 PF11412 Disulphide bond corrector protein DsbC AMQ28_07540 PF00072 Response regulator receiver domain AMQ28_07540 PF00486 Transcriptional regulatory protein, C terminal AMQ28_07545 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_07545 PF08521 Two-component sensor kinase N-terminal AMQ28_07550 PF13737 Transposase DDE domain AMQ28_07570 PF00694 Aconitase C-terminal domain AMQ28_07570 PF00330 Aconitase family (aconitate hydratase) AMQ28_07585 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_07585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_07590 PF07690 Major Facilitator Superfamily AMQ28_07595 PF01527 Transposase AMQ28_07600 PF13333 Integrase core domain AMQ28_07600 PF00665 Integrase core domain AMQ28_07600 PF13276 HTH-like domain AMQ28_07610 PF07690 Major Facilitator Superfamily AMQ28_07615 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_07615 PF13359 DDE superfamily endonuclease AMQ28_07630 PF07995 Glucose / Sorbosone dehydrogenase AMQ28_07640 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMQ28_07640 PF00925 GTP cyclohydrolase II AMQ28_07645 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMQ28_07650 PF01029 NusB family AMQ28_07655 PF00586 AIR synthase related protein, N-terminal domain AMQ28_07655 PF02769 AIR synthase related protein, C-terminal domain AMQ28_07660 PF04608 Phosphatidylglycerophosphatase A AMQ28_07665 PF14602 Hexapeptide repeat of succinyl-transferase AMQ28_07665 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_07665 PF12804 MobA-like NTP transferase domain AMQ28_07670 PF01380 SIS domain AMQ28_07675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_07675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_07675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_07675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_07680 PF16363 GDP-mannose 4,6 dehydratase AMQ28_07685 PF00342 Phosphoglucose isomerase AMQ28_07690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMQ28_07690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMQ28_07690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMQ28_07695 PF00483 Nucleotidyl transferase AMQ28_07700 PF02719 Polysaccharide biosynthesis protein AMQ28_07705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMQ28_07725 PF02397 Bacterial sugar transferase AMQ28_07730 PF13477 Glycosyl transferase 4-like AMQ28_07730 PF00534 Glycosyl transferases group 1 AMQ28_07740 PF00534 Glycosyl transferases group 1 AMQ28_07740 PF13439 Glycosyltransferase Family 4 AMQ28_07750 PF00534 Glycosyl transferases group 1 AMQ28_07765 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMQ28_07765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMQ28_07765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMQ28_07770 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMQ28_07770 PF02563 Polysaccharide biosynthesis/export protein AMQ28_07770 PF10531 SLBB domain AMQ28_07775 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMQ28_07780 PF02706 Chain length determinant protein AMQ28_07780 PF13807 G-rich domain on putative tyrosine kinase AMQ28_07780 PF13614 AAA domain AMQ28_07785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_07785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMQ28_07790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMQ28_07790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_07795 PF02230 Phospholipase/Carboxylesterase AMQ28_07805 PF14815 NUDIX domain AMQ28_07805 PF00730 HhH-GPD superfamily base excision DNA repair protein AMQ28_07805 PF00633 Helix-hairpin-helix motif AMQ28_07820 PF03352 Methyladenine glycosylase AMQ28_07825 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_07825 PF00107 Zinc-binding dehydrogenase AMQ28_07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_07830 PF03466 LysR substrate binding domain AMQ28_07840 PF05173 Dihydrodipicolinate reductase, C-terminus AMQ28_07840 PF01113 Dihydrodipicolinate reductase, N-terminus AMQ28_07850 PF00684 DnaJ central domain AMQ28_07850 PF00226 DnaJ domain AMQ28_07850 PF01556 DnaJ C terminal domain AMQ28_07860 PF00873 AcrB/AcrD/AcrF family AMQ28_07865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_07870 PF00440 Bacterial regulatory proteins, tetR family AMQ28_07875 PF00311 Phosphoenolpyruvate carboxylase AMQ28_07880 PF00860 Permease family AMQ28_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_07885 PF03466 LysR substrate binding domain AMQ28_07905 PF00920 Dehydratase family AMQ28_07910 PF00920 Dehydratase family AMQ28_07915 PF02911 Formyl transferase, C-terminal domain AMQ28_07915 PF00551 Formyl transferase AMQ28_07920 PF01029 NusB family AMQ28_07920 PF01189 16S rRNA methyltransferase RsmB/F AMQ28_07925 PF02535 ZIP Zinc transporter AMQ28_07930 PF00209 Sodium:neurotransmitter symporter family AMQ28_07970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMQ28_07980 PF07859 alpha/beta hydrolase fold AMQ28_07995 PF01025 GrpE AMQ28_08000 PF00012 Hsp70 protein AMQ28_08050 PF01521 Iron-sulphur cluster biosynthesis AMQ28_08070 PF12848 ABC transporter AMQ28_08070 PF00005 ABC transporter AMQ28_08080 PF01751 Toprim domain AMQ28_08080 PF18053 DNA gyrase B subunit insert domain AMQ28_08080 PF00204 DNA gyrase B AMQ28_08080 PF00986 DNA gyrase B subunit, carboxyl terminus AMQ28_08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_08085 PF02463 RecF/RecN/SMC N terminal domain AMQ28_08090 PF00712 DNA polymerase III beta subunit, N-terminal domain AMQ28_08090 PF02767 DNA polymerase III beta subunit, central domain AMQ28_08090 PF02768 DNA polymerase III beta subunit, C-terminal domain AMQ28_08095 PF08299 Bacterial dnaA protein helix-turn-helix AMQ28_08095 PF00308 Bacterial dnaA protein AMQ28_08095 PF11638 DnaA N-terminal domain AMQ28_08100 PF00468 Ribosomal protein L34 AMQ28_08105 PF00825 Ribonuclease P AMQ28_08110 PF01809 Putative membrane protein insertion efficiency factor AMQ28_08115 PF14849 YidC periplasmic domain AMQ28_08115 PF02096 60Kd inner membrane protein AMQ28_08120 PF10396 GTP-binding protein TrmE N-terminus AMQ28_08120 PF01926 50S ribosome-binding GTPase AMQ28_08120 PF12631 MnmE helical domain AMQ28_08130 PF13098 Thioredoxin-like domain AMQ28_08130 PF10411 Disulfide bond isomerase protein N-terminus AMQ28_08140 PF00156 Phosphoribosyl transferase domain AMQ28_08145 PF01979 Amidohydrolase family AMQ28_08150 PF03741 Integral membrane protein TerC family AMQ28_08155 PF07690 Major Facilitator Superfamily AMQ28_08160 PF14542 GCN5-related N-acetyl-transferase AMQ28_08165 PF02875 Mur ligase family, glutamate ligase domain AMQ28_08165 PF01225 Mur ligase family, catalytic domain AMQ28_08165 PF08245 Mur ligase middle domain AMQ28_08175 PF00731 AIR carboxylase AMQ28_08180 PF02222 ATP-grasp domain AMQ28_08180 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMQ28_08185 PF13406 Transglycosylase SLT domain AMQ28_08190 PF03702 Anhydro-N-acetylmuramic acid kinase AMQ28_08195 PF00579 tRNA synthetases class I (W and Y) AMQ28_08225 PF07995 Glucose / Sorbosone dehydrogenase AMQ28_08235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_08240 PF01252 Signal peptidase (SPase) II AMQ28_08245 PF06827 Zinc finger found in FPG and IleRS AMQ28_08245 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_08245 PF08264 Anticodon-binding domain of tRNA AMQ28_08250 PF01687 Riboflavin kinase AMQ28_08250 PF06574 FAD synthetase AMQ28_08265 PF08362 YcdC-like protein, C-terminal region AMQ28_08265 PF00440 Bacterial regulatory proteins, tetR family AMQ28_08270 PF00005 ABC transporter AMQ28_08275 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_08295 PF00296 Luciferase-like monooxygenase AMQ28_08300 PF09084 NMT1/THI5 like AMQ28_08305 PF09084 NMT1/THI5 like AMQ28_08310 PF00696 Amino acid kinase family AMQ28_08310 PF00583 Acetyltransferase (GNAT) family AMQ28_08325 PF00106 short chain dehydrogenase AMQ28_08330 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_08340 PF01323 DSBA-like thioredoxin domain AMQ28_08345 PF00440 Bacterial regulatory proteins, tetR family AMQ28_08350 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_08350 PF00970 Oxidoreductase FAD-binding domain AMQ28_08350 PF00175 Oxidoreductase NAD-binding domain AMQ28_08355 PF00487 Fatty acid desaturase AMQ28_08360 PF01138 3' exoribonuclease family, domain 1 AMQ28_08360 PF03725 3' exoribonuclease family, domain 2 AMQ28_08365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMQ28_08365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMQ28_08370 PF01510 N-acetylmuramoyl-L-alanine amidase AMQ28_08375 PF03023 Lipid II flippase MurJ AMQ28_08380 PF03692 Putative zinc- or iron-chelating domain AMQ28_08385 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_08385 PF00563 EAL domain AMQ28_08385 PF03707 Bacterial signalling protein N terminal repeat AMQ28_08390 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_08390 PF16193 AAA C-terminal domain AMQ28_08390 PF12002 MgsA AAA+ ATPase C terminal AMQ28_08395 PF01259 SAICAR synthetase AMQ28_08405 PF00701 Dihydrodipicolinate synthetase family AMQ28_08410 PF00857 Isochorismatase family AMQ28_08415 PF01758 Sodium Bile acid symporter family AMQ28_08440 PF02580 D-Tyr-tRNA(Tyr) deacylase AMQ28_08445 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMQ28_08445 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMQ28_08450 PF00581 Rhodanese-like domain AMQ28_08455 PF02666 Phosphatidylserine decarboxylase AMQ28_08465 PF03485 Arginyl tRNA synthetase N terminal domain AMQ28_08465 PF05746 DALR anticodon binding domain AMQ28_08465 PF00750 tRNA synthetases class I (R) AMQ28_08475 PF04286 Protein of unknown function (DUF445) AMQ28_08495 PF04262 Glutamate-cysteine ligase AMQ28_08500 PF02600 Disulfide bond formation protein DsbB AMQ28_08510 PF05728 Uncharacterised protein family (UPF0227) AMQ28_08515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_08515 PF00986 DNA gyrase B subunit, carboxyl terminus AMQ28_08515 PF01751 Toprim domain AMQ28_08515 PF00204 DNA gyrase B AMQ28_08545 PF11412 Disulphide bond corrector protein DsbC AMQ28_08545 PF02683 Cytochrome C biogenesis protein transmembrane region AMQ28_08550 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_08555 PF02525 Flavodoxin-like fold AMQ28_08560 PF07859 alpha/beta hydrolase fold AMQ28_08570 PF03960 ArsC family AMQ28_08575 PF03372 Endonuclease/Exonuclease/phosphatase family AMQ28_08580 PF00156 Phosphoribosyl transferase domain AMQ28_08585 PF07715 TonB-dependent Receptor Plug Domain AMQ28_08585 PF00593 TonB dependent receptor AMQ28_08590 PF13737 Transposase DDE domain AMQ28_08595 PF01047 MarR family AMQ28_08600 PF00255 Glutathione peroxidase AMQ28_08605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMQ28_08605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMQ28_08610 PF03033 Glycosyltransferase family 28 N-terminal domain AMQ28_08610 PF04101 Glycosyltransferase family 28 C-terminal domain AMQ28_08615 PF01225 Mur ligase family, catalytic domain AMQ28_08615 PF02875 Mur ligase family, glutamate ligase domain AMQ28_08615 PF08245 Mur ligase middle domain AMQ28_08620 PF07478 D-ala D-ala ligase C-terminus AMQ28_08620 PF01820 D-ala D-ala ligase N-terminus AMQ28_08625 PF03799 Cell division protein FtsQ AMQ28_08625 PF08478 POTRA domain, FtsQ-type AMQ28_08630 PF02491 SHS2 domain inserted in FTSA AMQ28_08635 PF12327 FtsZ family, C-terminal domain AMQ28_08635 PF00091 Tubulin/FtsZ family, GTPase domain AMQ28_08640 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMQ28_08655 PF17831 Pyruvate dehydrogenase E1 component middle domain AMQ28_08655 PF00456 Transketolase, thiamine diphosphate binding domain AMQ28_08660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMQ28_08660 PF00364 Biotin-requiring enzyme AMQ28_08660 PF02817 e3 binding domain AMQ28_08665 PF01169 Uncharacterized protein family UPF0016 AMQ28_08670 PF03692 Putative zinc- or iron-chelating domain AMQ28_08675 PF00571 CBS domain AMQ28_08675 PF00478 IMP dehydrogenase / GMP reductase domain AMQ28_08680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_08680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_08680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_08680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_08685 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMQ28_08685 PF01243 Pyridoxamine 5'-phosphate oxidase AMQ28_08690 PF17768 RecJ OB domain AMQ28_08690 PF02272 DHHA1 domain AMQ28_08690 PF01368 DHH family AMQ28_08700 PF00472 RF-1 domain AMQ28_08700 PF03462 PCRF domain AMQ28_08710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_08715 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMQ28_08720 PF04452 RNA methyltransferase AMQ28_08725 PF00924 Mechanosensitive ion channel AMQ28_08735 PF13193 AMP-binding enzyme C-terminal domain AMQ28_08735 PF16177 Acetyl-coenzyme A synthetase N-terminus AMQ28_08735 PF00501 AMP-binding enzyme AMQ28_08740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_08740 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_08750 PF00296 Luciferase-like monooxygenase AMQ28_08755 PF03358 NADPH-dependent FMN reductase AMQ28_08760 PF00072 Response regulator receiver domain AMQ28_08760 PF00196 Bacterial regulatory proteins, luxR family AMQ28_08770 PF00672 HAMP domain AMQ28_08770 PF00072 Response regulator receiver domain AMQ28_08770 PF01627 Hpt domain AMQ28_08770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_08770 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_08775 PF04341 Protein of unknown function, DUF485 AMQ28_08780 PF00474 Sodium:solute symporter family AMQ28_08790 PF02028 BCCT, betaine/carnitine/choline family transporter AMQ28_08800 PF00905 Penicillin binding protein transpeptidase domain AMQ28_08805 PF17760 UvrA interaction domain AMQ28_08805 PF17755 UvrA DNA-binding domain AMQ28_08815 PF06942 GlpM protein AMQ28_08820 PF02581 Thiamine monophosphate synthase AMQ28_08820 PF03070 TENA/THI-4/PQQC family AMQ28_08820 PF08543 Phosphomethylpyrimidine kinase AMQ28_08830 PF07690 Major Facilitator Superfamily AMQ28_08845 PF13276 HTH-like domain AMQ28_08845 PF00665 Integrase core domain AMQ28_08845 PF13333 Integrase core domain AMQ28_08850 PF01527 Transposase AMQ28_08865 PF00436 Single-strand binding protein family AMQ28_08870 PF00589 Phage integrase family AMQ28_08870 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_08880 PF00872 Transposase, Mutator family AMQ28_08910 PF13276 HTH-like domain AMQ28_08910 PF00665 Integrase core domain AMQ28_08910 PF13333 Integrase core domain AMQ28_08915 PF01381 Helix-turn-helix AMQ28_08925 PF13276 HTH-like domain AMQ28_08925 PF13333 Integrase core domain AMQ28_08925 PF00665 Integrase core domain AMQ28_08940 PF13333 Integrase core domain AMQ28_08940 PF00665 Integrase core domain AMQ28_08940 PF13276 HTH-like domain AMQ28_08970 PF01527 Transposase AMQ28_08975 PF13333 Integrase core domain AMQ28_08975 PF00665 Integrase core domain AMQ28_08975 PF13276 HTH-like domain AMQ28_08980 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_08985 PF00067 Cytochrome P450 AMQ28_08990 PF14759 Reductase C-terminal AMQ28_08990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_09010 PF13359 DDE superfamily endonuclease AMQ28_09010 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_09030 PF00436 Single-strand binding protein family AMQ28_09040 PF00578 AhpC/TSA family AMQ28_09040 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_09045 PF02678 Pirin AMQ28_09045 PF05726 Pirin C-terminal cupin domain AMQ28_09050 PF01593 Flavin containing amine oxidoreductase AMQ28_09070 PF17763 Glutaminase/Asparaginase C-terminal domain AMQ28_09070 PF00710 Asparaginase, N-terminal AMQ28_09085 PF13276 HTH-like domain AMQ28_09085 PF00665 Integrase core domain AMQ28_09085 PF13333 Integrase core domain AMQ28_09100 PF13784 Fic/DOC family N-terminal AMQ28_09100 PF02661 Fic/DOC family AMQ28_09125 PF02705 K+ potassium transporter AMQ28_09155 PF00977 Histidine biosynthesis protein AMQ28_09160 PF01636 Phosphotransferase enzyme family AMQ28_09175 PF00977 Histidine biosynthesis protein AMQ28_09185 PF00117 Glutamine amidotransferase class-I AMQ28_09190 PF00475 Imidazoleglycerol-phosphate dehydratase AMQ28_09230 PF09313 Domain of unknown function (DUF1971) AMQ28_09230 PF03848 Tellurite resistance protein TehB AMQ28_09260 PF00665 Integrase core domain AMQ28_09260 PF13936 Helix-turn-helix domain AMQ28_09265 PF02803 Thiolase, C-terminal domain AMQ28_09265 PF00108 Thiolase, N-terminal domain AMQ28_09270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMQ28_09270 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_09270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMQ28_09275 PF01541 GIY-YIG catalytic domain AMQ28_09275 PF02151 UvrB/uvrC motif AMQ28_09275 PF08459 UvrC Helix-hairpin-helix N-terminal AMQ28_09285 PF01066 CDP-alcohol phosphatidyltransferase AMQ28_09290 PF04362 Bacterial Fe(2+) trafficking AMQ28_09295 PF00206 Lyase AMQ28_09295 PF14698 Argininosuccinate lyase C-terminal AMQ28_09300 PF06580 Histidine kinase AMQ28_09300 PF07694 5TMR of 5TMR-LYT AMQ28_09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_09305 PF04397 LytTr DNA-binding domain AMQ28_09305 PF00072 Response regulator receiver domain AMQ28_09310 PF03900 Porphobilinogen deaminase, C-terminal domain AMQ28_09310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMQ28_09330 PF03061 Thioesterase superfamily AMQ28_09335 PF00816 H-NS histone family AMQ28_09350 PF00263 Bacterial type II and III secretion system protein AMQ28_09350 PF03958 Bacterial type II/III secretion system short domain AMQ28_09355 PF12401 Protein of unknown function (DUF2662) AMQ28_09355 PF00498 FHA domain AMQ28_09360 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_09365 PF00425 chorismate binding enzyme AMQ28_09365 PF04715 Anthranilate synthase component I, N terminal region AMQ28_09390 PF00009 Elongation factor Tu GTP binding domain AMQ28_09390 PF03144 Elongation factor Tu domain 2 AMQ28_09390 PF03143 Elongation factor Tu C-terminal domain AMQ28_09395 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMQ28_09400 PF00467 KOW motif AMQ28_09400 PF02357 Transcription termination factor nusG AMQ28_09405 PF00298 Ribosomal protein L11, RNA binding domain AMQ28_09405 PF03946 Ribosomal protein L11, N-terminal domain AMQ28_09410 PF00687 Ribosomal protein L1p/L10e family AMQ28_09415 PF00466 Ribosomal protein L10 AMQ28_09420 PF00542 Ribosomal protein L7/L12 C-terminal domain AMQ28_09420 PF16320 Ribosomal protein L7/L12 dimerisation domain AMQ28_09425 PF04563 RNA polymerase beta subunit AMQ28_09425 PF04561 RNA polymerase Rpb2, domain 2 AMQ28_09425 PF04565 RNA polymerase Rpb2, domain 3 AMQ28_09425 PF10385 RNA polymerase beta subunit external 1 domain AMQ28_09425 PF00562 RNA polymerase Rpb2, domain 6 AMQ28_09425 PF04560 RNA polymerase Rpb2, domain 7 AMQ28_09430 PF04998 RNA polymerase Rpb1, domain 5 AMQ28_09430 PF05000 RNA polymerase Rpb1, domain 4 AMQ28_09430 PF04983 RNA polymerase Rpb1, domain 3 AMQ28_09430 PF00623 RNA polymerase Rpb1, domain 2 AMQ28_09430 PF04997 RNA polymerase Rpb1, domain 1 AMQ28_09445 PF00561 alpha/beta hydrolase fold AMQ28_09450 PF13726 Na+-H+ antiporter family AMQ28_09450 PF03553 Na+/H+ antiporter family AMQ28_09455 PF13737 Transposase DDE domain AMQ28_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_09470 PF00183 Hsp90 protein AMQ28_09500 PF01323 DSBA-like thioredoxin domain AMQ28_09510 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMQ28_09510 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMQ28_09515 PF00672 HAMP domain AMQ28_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_09515 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_09520 PF00072 Response regulator receiver domain AMQ28_09520 PF00486 Transcriptional regulatory protein, C terminal AMQ28_09525 PF00575 S1 RNA binding domain AMQ28_09525 PF09371 Tex-like protein N-terminal domain AMQ28_09525 PF16921 Tex protein YqgF-like domain AMQ28_09525 PF17674 HHH domain AMQ28_09535 PF00106 short chain dehydrogenase AMQ28_09540 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_09545 PF12848 ABC transporter AMQ28_09545 PF00005 ABC transporter AMQ28_09570 PF07517 SecA DEAD-like domain AMQ28_09570 PF01043 SecA preprotein cross-linking domain AMQ28_09570 PF07516 SecA Wing and Scaffold domain AMQ28_09570 PF02810 SEC-C motif AMQ28_09575 PF13333 Integrase core domain AMQ28_09575 PF00665 Integrase core domain AMQ28_09575 PF13276 HTH-like domain AMQ28_09580 PF01527 Transposase AMQ28_09625 PF01545 Cation efflux family AMQ28_09630 PF13276 HTH-like domain AMQ28_09630 PF13333 Integrase core domain AMQ28_09630 PF00665 Integrase core domain AMQ28_09660 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_09680 PF01795 MraW methylase family AMQ28_09690 PF00905 Penicillin binding protein transpeptidase domain AMQ28_09690 PF03717 Penicillin-binding Protein dimerisation domain AMQ28_09695 PF08245 Mur ligase middle domain AMQ28_09695 PF01225 Mur ligase family, catalytic domain AMQ28_09695 PF02875 Mur ligase family, glutamate ligase domain AMQ28_09700 PF01225 Mur ligase family, catalytic domain AMQ28_09700 PF02875 Mur ligase family, glutamate ligase domain AMQ28_09700 PF08245 Mur ligase middle domain AMQ28_09705 PF00953 Glycosyl transferase family 4 AMQ28_09710 PF13847 Methyltransferase domain AMQ28_09715 PF17092 Penicillin-binding protein OB-like domain AMQ28_09715 PF00905 Penicillin binding protein transpeptidase domain AMQ28_09715 PF00912 Transglycosylase AMQ28_09740 PF00263 Bacterial type II and III secretion system protein AMQ28_09740 PF07660 Secretin and TonB N terminus short domain AMQ28_09740 PF03958 Bacterial type II/III secretion system short domain AMQ28_09740 PF11741 AMIN domain AMQ28_09745 PF01202 Shikimate kinase AMQ28_09750 PF01761 3-dehydroquinate synthase AMQ28_09760 PF04898 Glutamate synthase central domain AMQ28_09760 PF01645 Conserved region in glutamate synthase AMQ28_09760 PF01493 GXGXG motif AMQ28_09760 PF00310 Glutamine amidotransferases class-II AMQ28_09765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMQ28_09765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_09775 PF04011 LemA family AMQ28_09780 PF04536 TPM domain AMQ28_09790 PF07963 Prokaryotic N-terminal methylation motif AMQ28_09790 PF00114 Pilin (bacterial filament) AMQ28_09805 PF15864 Protein glycosylation ligase AMQ28_09805 PF11846 Virulence factor membrane-bound polymerase, C-terminal AMQ28_09805 PF04932 O-Antigen ligase AMQ28_09810 PF00210 Ferritin-like domain AMQ28_09815 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_09820 PF01042 Endoribonuclease L-PSP AMQ28_09825 PF13291 ACT domain AMQ28_09825 PF04607 Region found in RelA / SpoT proteins AMQ28_09825 PF02824 TGS domain AMQ28_09830 PF01192 RNA polymerase Rpb6 AMQ28_09835 PF00625 Guanylate kinase AMQ28_09840 PF02401 LytB protein AMQ28_09845 PF07963 Prokaryotic N-terminal methylation motif AMQ28_09845 PF00114 Pilin (bacterial filament) AMQ28_09880 PF00886 Ribosomal protein S16 AMQ28_09885 PF05239 PRC-barrel domain AMQ28_09885 PF01782 RimM N-terminal domain AMQ28_09890 PF01746 tRNA (Guanine-1)-methyltransferase AMQ28_09895 PF01245 Ribosomal protein L19 AMQ28_09900 PF00561 alpha/beta hydrolase fold AMQ28_09905 PF00561 alpha/beta hydrolase fold AMQ28_09910 PF03280 Proteobacterial lipase chaperone protein AMQ28_09915 PF09157 Pseudouridine synthase II TruB, C-terminal AMQ28_09915 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMQ28_09915 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMQ28_09920 PF01925 Sulfite exporter TauE/SafE AMQ28_09930 PF00892 EamA-like transporter family AMQ28_09935 PF00892 EamA-like transporter family AMQ28_09940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_09940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_09945 PF02913 FAD linked oxidases, C-terminal domain AMQ28_09945 PF01565 FAD binding domain AMQ28_09955 PF07690 Major Facilitator Superfamily AMQ28_09960 PF12805 FUSC-like inner membrane protein yccS AMQ28_09965 PF00080 Copper/zinc superoxide dismutase (SODC) AMQ28_09970 PF01594 AI-2E family transporter AMQ28_09975 PF13614 AAA domain AMQ28_09985 PF01209 ubiE/COQ5 methyltransferase family AMQ28_10005 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMQ28_10010 PF01197 Ribosomal protein L31 AMQ28_10015 PF03109 ABC1 family AMQ28_10020 PF01554 MatE AMQ28_10030 PF06969 HemN C-terminal domain AMQ28_10030 PF04055 Radical SAM superfamily AMQ28_10035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_10035 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_10035 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_10035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_10040 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMQ28_10040 PF01488 Shikimate / quinate 5-dehydrogenase AMQ28_10040 PF08501 Shikimate dehydrogenase substrate binding domain AMQ28_10055 PF00925 GTP cyclohydrolase II AMQ28_10060 PF02780 Transketolase, C-terminal domain AMQ28_10060 PF02779 Transketolase, pyrimidine binding domain AMQ28_10060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMQ28_10065 PF00459 Inositol monophosphatase family AMQ28_10070 PF00270 DEAD/DEAH box helicase AMQ28_10070 PF00271 Helicase conserved C-terminal domain AMQ28_10075 PF00005 ABC transporter AMQ28_10080 PF02405 Permease MlaE AMQ28_10085 PF02470 MlaD protein AMQ28_10090 PF05494 MlaC protein AMQ28_10100 PF01544 CorA-like Mg2+ transporter protein AMQ28_10105 PF03641 Possible lysine decarboxylase AMQ28_10115 PF00156 Phosphoribosyl transferase domain AMQ28_10120 PF00270 DEAD/DEAH box helicase AMQ28_10120 PF00271 Helicase conserved C-terminal domain AMQ28_10120 PF17191 RecG wedge domain AMQ28_10130 PF01553 Acyltransferase AMQ28_10140 PF00375 Sodium:dicarboxylate symporter family AMQ28_10150 PF01926 50S ribosome-binding GTPase AMQ28_10155 PF02082 Transcriptional regulator AMQ28_10160 PF00042 Globin AMQ28_10160 PF00175 Oxidoreductase NAD-binding domain AMQ28_10160 PF00970 Oxidoreductase FAD-binding domain AMQ28_10165 PF05872 Bacterial protein of unknown function (DUF853) AMQ28_10170 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_10175 PF00958 GMP synthase C terminal domain AMQ28_10175 PF02540 NAD synthase AMQ28_10175 PF00117 Glutamine amidotransferase class-I AMQ28_10180 PF00338 Ribosomal protein S10p/S20e AMQ28_10185 PF00297 Ribosomal protein L3 AMQ28_10190 PF00573 Ribosomal protein L4/L1 family AMQ28_10195 PF00276 Ribosomal protein L23 AMQ28_10200 PF03947 Ribosomal Proteins L2, C-terminal domain AMQ28_10200 PF00181 Ribosomal Proteins L2, RNA binding domain AMQ28_10205 PF00203 Ribosomal protein S19 AMQ28_10210 PF00237 Ribosomal protein L22p/L17e AMQ28_10215 PF07650 KH domain AMQ28_10215 PF00189 Ribosomal protein S3, C-terminal domain AMQ28_10220 PF00252 Ribosomal protein L16p/L10e AMQ28_10225 PF00831 Ribosomal L29 protein AMQ28_10230 PF00366 Ribosomal protein S17 AMQ28_10235 PF00238 Ribosomal protein L14p/L23e AMQ28_10240 PF00467 KOW motif AMQ28_10240 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMQ28_10245 PF00281 Ribosomal protein L5 AMQ28_10245 PF00673 ribosomal L5P family C-terminus AMQ28_10250 PF00253 Ribosomal protein S14p/S29e AMQ28_10255 PF00410 Ribosomal protein S8 AMQ28_10260 PF00347 Ribosomal protein L6 AMQ28_10265 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMQ28_10270 PF00333 Ribosomal protein S5, N-terminal domain AMQ28_10270 PF03719 Ribosomal protein S5, C-terminal domain AMQ28_10275 PF00327 Ribosomal protein L30p/L7e AMQ28_10280 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMQ28_10285 PF00344 SecY translocase AMQ28_10290 PF00444 Ribosomal protein L36 AMQ28_10295 PF00416 Ribosomal protein S13/S18 AMQ28_10300 PF00411 Ribosomal protein S11 AMQ28_10305 PF00163 Ribosomal protein S4/S9 N-terminal domain AMQ28_10305 PF01479 S4 domain AMQ28_10310 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMQ28_10310 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMQ28_10310 PF01000 RNA polymerase Rpb3/RpoA insert domain AMQ28_10315 PF01196 Ribosomal protein L17 AMQ28_10320 PF00743 Flavin-binding monooxygenase-like AMQ28_10325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_10325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_10325 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_10330 PF03937 Flavinator of succinate dehydrogenase AMQ28_10360 PF09526 Probable metal-binding protein (DUF2387) AMQ28_10365 PF01432 Peptidase family M3 AMQ28_10370 PF17876 Cold shock domain AMQ28_10370 PF08461 Ribonuclease R winged-helix domain AMQ28_10370 PF08206 Ribonuclease B OB domain AMQ28_10370 PF00575 S1 RNA binding domain AMQ28_10370 PF00773 RNB domain AMQ28_10405 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMQ28_10410 PF03631 Virulence factor BrkB AMQ28_10415 PF03358 NADPH-dependent FMN reductase AMQ28_10455 PF02130 Uncharacterized protein family UPF0054 AMQ28_10460 PF02562 PhoH-like protein AMQ28_10465 PF01938 TRAM domain AMQ28_10465 PF00919 Uncharacterized protein family UPF0004 AMQ28_10465 PF04055 Radical SAM superfamily AMQ28_10470 PF01551 Peptidase family M23 AMQ28_10470 PF10145 Phage-related minor tail protein AMQ28_10470 PF01464 Transglycosylase SLT domain AMQ28_10480 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMQ28_10480 PF00056 lactate/malate dehydrogenase, NAD binding domain AMQ28_10505 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMQ28_10510 PF01066 CDP-alcohol phosphatidyltransferase AMQ28_10555 PF00753 Metallo-beta-lactamase superfamily AMQ28_10555 PF04273 Putative phosphatase (DUF442) AMQ28_10565 PF00085 Thioredoxin AMQ28_10570 PF03061 Thioesterase superfamily AMQ28_10580 PF04461 Protein of unknown function (DUF520) AMQ28_10590 PF01266 FAD dependent oxidoreductase AMQ28_10590 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_10605 PF04279 Intracellular septation protein A AMQ28_10615 PF01062 Bestrophin, RFP-TM, chloride channel AMQ28_10620 PF04002 RadC-like JAB domain AMQ28_10625 PF04127 DNA / pantothenate metabolism flavoprotein AMQ28_10625 PF02441 Flavoprotein AMQ28_10630 PF07361 Cytochrome b562 AMQ28_10635 PF01207 Dihydrouridine synthase (Dus) AMQ28_10640 PF00589 Phage integrase family AMQ28_10700 PF02384 N-6 DNA Methylase AMQ28_10705 PF00270 DEAD/DEAH box helicase AMQ28_10705 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AMQ28_10705 PF17191 RecG wedge domain AMQ28_10720 PF13333 Integrase core domain AMQ28_10720 PF13276 HTH-like domain AMQ28_10720 PF00665 Integrase core domain AMQ28_10750 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMQ28_10750 PF11867 Domain of unknown function (DUF3387) AMQ28_10750 PF18766 SWI2/SNF2 ATPase AMQ28_10775 PF07690 Major Facilitator Superfamily AMQ28_10780 PF00892 EamA-like transporter family AMQ28_10785 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMQ28_10785 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMQ28_10790 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMQ28_10795 PF02233 NAD(P) transhydrogenase beta subunit AMQ28_10800 PF00106 short chain dehydrogenase AMQ28_10810 PF01261 Xylose isomerase-like TIM barrel AMQ28_10815 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_10815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_10820 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_10825 PF01627 Hpt domain AMQ28_10825 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_10825 PF00072 Response regulator receiver domain AMQ28_10825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMQ28_10825 PF00672 HAMP domain AMQ28_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_10830 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_10840 PF05958 tRNA (Uracil-5-)-methyltransferase AMQ28_10845 PF04607 Region found in RelA / SpoT proteins AMQ28_10845 PF02824 TGS domain AMQ28_10845 PF13291 ACT domain AMQ28_10850 PF02355 Protein export membrane protein AMQ28_10850 PF07549 SecD/SecF GG Motif AMQ28_10855 PF13721 SecD export protein N-terminal TM region AMQ28_10855 PF02355 Protein export membrane protein AMQ28_10855 PF07549 SecD/SecF GG Motif AMQ28_10860 PF02699 Preprotein translocase subunit AMQ28_10865 PF01702 Queuine tRNA-ribosyltransferase AMQ28_10870 PF04011 LemA family AMQ28_10880 PF02547 Queuosine biosynthesis protein AMQ28_10890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMQ28_10890 PF00072 Response regulator receiver domain AMQ28_10890 PF01627 Hpt domain AMQ28_10890 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_10890 PF00672 HAMP domain AMQ28_10890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_10895 PF08335 GlnD PII-uridylyltransferase AMQ28_10895 PF03710 Glutamate-ammonia ligase adenylyltransferase AMQ28_10900 PF01063 Amino-transferase class IV AMQ28_10910 PF01522 Polysaccharide deacetylase AMQ28_10915 PF08323 Starch synthase catalytic domain AMQ28_10915 PF00534 Glycosyl transferases group 1 AMQ28_10925 PF16363 GDP-mannose 4,6 dehydratase AMQ28_10930 PF04321 RmlD substrate binding domain AMQ28_10935 PF00483 Nucleotidyl transferase AMQ28_10940 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMQ28_10950 PF13936 Helix-turn-helix domain AMQ28_10950 PF00665 Integrase core domain AMQ28_10955 PF00535 Glycosyl transferase family 2 AMQ28_10975 PF01336 OB-fold nucleic acid binding domain AMQ28_10975 PF02938 GAD domain AMQ28_10975 PF00152 tRNA synthetases class II (D, K and N) AMQ28_10985 PF07715 TonB-dependent Receptor Plug Domain AMQ28_10985 PF00593 TonB dependent receptor AMQ28_11005 PF06146 Phosphate-starvation-inducible E AMQ28_11010 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_11010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_11010 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_11010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_11015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_11015 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_11015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_11015 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_11025 PF00672 HAMP domain AMQ28_11025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_11025 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_11030 PF00486 Transcriptional regulatory protein, C terminal AMQ28_11030 PF00072 Response regulator receiver domain AMQ28_11040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMQ28_11055 PF01923 Cobalamin adenosyltransferase AMQ28_11060 PF00593 TonB dependent receptor AMQ28_11060 PF07715 TonB-dependent Receptor Plug Domain AMQ28_11065 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMQ28_11070 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_11090 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_11090 PF12833 Helix-turn-helix domain AMQ28_11095 PF00290 Tryptophan synthase alpha chain AMQ28_11100 PF01039 Carboxyl transferase domain AMQ28_11105 PF08245 Mur ligase middle domain AMQ28_11120 PF00753 Metallo-beta-lactamase superfamily AMQ28_11125 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_11125 PF00578 AhpC/TSA family AMQ28_11130 PF07516 SecA Wing and Scaffold domain AMQ28_11130 PF01043 SecA preprotein cross-linking domain AMQ28_11130 PF07517 SecA DEAD-like domain AMQ28_11130 PF02810 SEC-C motif AMQ28_11140 PF01960 ArgJ family AMQ28_11145 PF02445 Quinolinate synthetase A protein AMQ28_11220 PF04386 Stringent starvation protein B AMQ28_11225 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_11225 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_11230 PF00380 Ribosomal protein S9/S16 AMQ28_11235 PF00572 Ribosomal protein L13 AMQ28_11240 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMQ28_11245 PF00398 Ribosomal RNA adenine dimethylase AMQ28_11250 PF00149 Calcineurin-like phosphoesterase AMQ28_11275 PF13167 GTP-binding GTPase N-terminal AMQ28_11275 PF16360 GTP-binding GTPase Middle Region AMQ28_11275 PF01926 50S ribosome-binding GTPase AMQ28_11285 PF13091 PLD-like domain AMQ28_11290 PF00149 Calcineurin-like phosphoesterase AMQ28_11300 PF07690 Major Facilitator Superfamily AMQ28_11300 PF00083 Sugar (and other) transporter AMQ28_11305 PF03006 Haemolysin-III related AMQ28_11315 PF07715 TonB-dependent Receptor Plug Domain AMQ28_11315 PF00593 TonB dependent receptor AMQ28_11320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_11345 PF01571 Aminomethyltransferase folate-binding domain AMQ28_11350 PF00694 Aconitase C-terminal domain AMQ28_11350 PF00330 Aconitase family (aconitate hydratase) AMQ28_11365 PF07690 Major Facilitator Superfamily AMQ28_11370 PF00083 Sugar (and other) transporter AMQ28_11375 PF00849 RNA pseudouridylate synthase AMQ28_11390 PF08274 PhnA Zinc-Ribbon AMQ28_11390 PF03831 PhnA domain AMQ28_11400 PF02581 Thiamine monophosphate synthase AMQ28_11400 PF03070 TENA/THI-4/PQQC family AMQ28_11400 PF08543 Phosphomethylpyrimidine kinase AMQ28_11405 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_11415 PF00109 Beta-ketoacyl synthase, N-terminal domain AMQ28_11415 PF02801 Beta-ketoacyl synthase, C-terminal domain AMQ28_11425 PF00164 Ribosomal protein S12/S23 AMQ28_11430 PF00177 Ribosomal protein S7p/S5e AMQ28_11435 PF03764 Elongation factor G, domain IV AMQ28_11435 PF14492 Elongation Factor G, domain II AMQ28_11435 PF00009 Elongation factor Tu GTP binding domain AMQ28_11435 PF03144 Elongation factor Tu domain 2 AMQ28_11435 PF00679 Elongation factor G C-terminus AMQ28_11440 PF03143 Elongation factor Tu C-terminal domain AMQ28_11440 PF00009 Elongation factor Tu GTP binding domain AMQ28_11440 PF03144 Elongation factor Tu domain 2 AMQ28_11450 PF00583 Acetyltransferase (GNAT) family AMQ28_11455 PF04376 Arginine-tRNA-protein transferase, N terminus AMQ28_11455 PF04377 Arginine-tRNA-protein transferase, C terminus AMQ28_11460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMQ28_11465 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_11470 PF17854 FtsK alpha domain AMQ28_11470 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMQ28_11470 PF09397 Ftsk gamma domain AMQ28_11470 PF01580 FtsK/SpoIIIE family AMQ28_11485 PF03776 Septum formation topological specificity factor MinE AMQ28_11490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMQ28_11495 PF03775 Septum formation inhibitor MinC, C-terminal domain AMQ28_11505 PF01553 Acyltransferase AMQ28_11510 PF00691 OmpA family AMQ28_11510 PF13488 Glycine zipper AMQ28_11515 PF13361 UvrD-like helicase C-terminal domain AMQ28_11515 PF00580 UvrD/REP helicase N-terminal domain AMQ28_11520 PF00692 dUTPase AMQ28_11525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_11525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_11525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_11525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_11530 PF00696 Amino acid kinase family AMQ28_11535 PF13230 Glutamine amidotransferases class-II AMQ28_11540 PF01814 Hemerythrin HHE cation binding domain AMQ28_11550 PF03658 RnfH family Ubiquitin AMQ28_11555 PF04355 SmpA / OmlA family AMQ28_11560 PF01475 Ferric uptake regulator family AMQ28_11565 PF00437 Type II/IV secretion system protein AMQ28_11570 PF00437 Type II/IV secretion system protein AMQ28_11575 PF01168 Alanine racemase, N-terminal domain AMQ28_11585 PF00149 Calcineurin-like phosphoesterase AMQ28_11585 PF12320 Type 5 capsule protein repressor C-terminal domain AMQ28_11590 PF00360 Phytochrome region AMQ28_11590 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_11590 PF00563 EAL domain AMQ28_11590 PF01590 GAF domain AMQ28_11605 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_11605 PF13359 DDE superfamily endonuclease AMQ28_11610 PF03783 Curli production assembly/transport component CsgG AMQ28_11620 PF05643 Putative bacterial lipoprotein (DUF799) AMQ28_11625 PF09334 tRNA synthetases class I (M) AMQ28_11625 PF01588 Putative tRNA binding domain AMQ28_11645 PF05992 SbmA/BacA-like family AMQ28_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_11660 PF03466 LysR substrate binding domain AMQ28_11685 PF02934 GatB/GatE catalytic domain AMQ28_11685 PF02637 GatB domain AMQ28_11690 PF01425 Amidase AMQ28_11695 PF02686 Glu-tRNAGln amidotransferase C subunit AMQ28_11705 PF04085 rod shape-determining protein MreC AMQ28_11715 PF02545 Maf-like protein AMQ28_11720 PF10150 Ribonuclease E/G family AMQ28_11720 PF00575 S1 RNA binding domain AMQ28_11725 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMQ28_11725 PF06974 Protein of unknown function (DUF1298) AMQ28_11730 PF01507 Phosphoadenosine phosphosulfate reductase family AMQ28_11755 PF00465 Iron-containing alcohol dehydrogenase AMQ28_11765 PF00083 Sugar (and other) transporter AMQ28_11785 PF00324 Amino acid permease AMQ28_11790 PF04303 PrpF protein AMQ28_11795 PF00348 Polyprenyl synthetase AMQ28_11800 PF00474 Sodium:solute symporter family AMQ28_11805 PF01145 SPFH domain / Band 7 family AMQ28_11815 PF01734 Patatin-like phospholipase AMQ28_11835 PF00884 Sulfatase AMQ28_11835 PF08019 Phosphoethanolamine transferase EptA/EptB AMQ28_11840 PF00486 Transcriptional regulatory protein, C terminal AMQ28_11840 PF00072 Response regulator receiver domain AMQ28_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_11845 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_11845 PF08521 Two-component sensor kinase N-terminal AMQ28_11855 PF00909 Ammonium Transporter Family AMQ28_11860 PF00005 ABC transporter AMQ28_11865 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_11870 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_11875 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMQ28_11880 PF04239 Protein of unknown function (DUF421) AMQ28_11905 PF02463 RecF/RecN/SMC N terminal domain AMQ28_11910 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_11910 PF08264 Anticodon-binding domain of tRNA AMQ28_11910 PF10458 Valyl tRNA synthetase tRNA binding arm AMQ28_11920 PF00106 short chain dehydrogenase AMQ28_11925 PF01906 Putative heavy-metal-binding AMQ28_11930 PF01906 Putative heavy-metal-binding AMQ28_11935 PF02321 Outer membrane efflux protein AMQ28_11940 PF00873 AcrB/AcrD/AcrF family AMQ28_11945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_11945 PF00529 HlyD membrane-fusion protein of T1SS AMQ28_11950 PF01569 PAP2 superfamily AMQ28_11960 PF00348 Polyprenyl synthetase AMQ28_11965 PF00829 Ribosomal prokaryotic L21 protein AMQ28_11970 PF01016 Ribosomal L27 protein AMQ28_11985 PF03548 Outer membrane lipoprotein carrier protein LolA AMQ28_11995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_11995 PF02403 Seryl-tRNA synthetase N-terminal domain AMQ28_12000 PF10414 Sirohaem synthase dimerisation region AMQ28_12000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMQ28_12000 PF14824 Sirohaem biosynthesis protein central AMQ28_12005 PF00588 SpoU rRNA Methylase family AMQ28_12010 PF13520 Amino acid permease AMQ28_12015 PF00465 Iron-containing alcohol dehydrogenase AMQ28_12025 PF03099 Biotin/lipoate A/B protein ligase family AMQ28_12030 PF04359 Protein of unknown function (DUF493) AMQ28_12035 PF04539 Sigma-70 region 3 AMQ28_12035 PF04542 Sigma-70 region 2 AMQ28_12035 PF00140 Sigma-70 factor, region 1.2 AMQ28_12035 PF03979 Sigma-70 factor, region 1.1 AMQ28_12035 PF04546 Sigma-70, non-essential region AMQ28_12035 PF04545 Sigma-70, region 4 AMQ28_12050 PF09335 SNARE associated Golgi protein AMQ28_12065 PF02261 Aspartate decarboxylase AMQ28_12070 PF01195 Peptidyl-tRNA hydrolase AMQ28_12075 PF01386 Ribosomal L25p family AMQ28_12080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMQ28_12080 PF14572 Phosphoribosyl synthetase-associated domain AMQ28_12105 PF00288 GHMP kinases N terminal domain AMQ28_12105 PF08544 GHMP kinases C terminal AMQ28_12110 PF03550 Outer membrane lipoprotein LolB AMQ28_12120 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMQ28_12120 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMQ28_12120 PF01488 Shikimate / quinate 5-dehydrogenase AMQ28_12125 PF01807 CHC2 zinc finger AMQ28_12125 PF08275 DNA primase catalytic core, N-terminal domain AMQ28_12125 PF08278 DNA primase DnaG DnaB-binding AMQ28_12125 PF10410 DnaB-helicase binding domain of primase AMQ28_12130 PF13525 Outer membrane lipoprotein AMQ28_12135 PF01479 S4 domain AMQ28_12135 PF00849 RNA pseudouridylate synthase AMQ28_12145 PF03358 NADPH-dependent FMN reductase AMQ28_12150 PF01668 SmpB protein AMQ28_12155 PF01467 Cytidylyltransferase-like AMQ28_12160 PF00037 4Fe-4S binding domain AMQ28_12185 PF00795 Carbon-nitrogen hydrolase AMQ28_12185 PF02540 NAD synthase AMQ28_12215 PF00743 Flavin-binding monooxygenase-like AMQ28_12220 PF00285 Citrate synthase, C-terminal domain AMQ28_12225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMQ28_12230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMQ28_12235 PF00890 FAD binding domain AMQ28_12235 PF02910 Fumarate reductase flavoprotein C-term AMQ28_12240 PF13085 2Fe-2S iron-sulfur cluster binding domain AMQ28_12250 PF16078 2-oxoglutarate dehydrogenase N-terminus AMQ28_12250 PF16870 2-oxoglutarate dehydrogenase C-terminal AMQ28_12250 PF02779 Transketolase, pyrimidine binding domain AMQ28_12250 PF00676 Dehydrogenase E1 component AMQ28_12255 PF02817 e3 binding domain AMQ28_12255 PF00364 Biotin-requiring enzyme AMQ28_12255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMQ28_12260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_12260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_12265 PF00549 CoA-ligase AMQ28_12265 PF08442 ATP-grasp domain AMQ28_12270 PF02629 CoA binding domain AMQ28_12270 PF00549 CoA-ligase AMQ28_12275 PF01507 Phosphoadenosine phosphosulfate reductase family AMQ28_12280 PF00009 Elongation factor Tu GTP binding domain AMQ28_12290 PF00698 Acyl transferase domain AMQ28_12290 PF00109 Beta-ketoacyl synthase, N-terminal domain AMQ28_12290 PF14765 Polyketide synthase dehydratase AMQ28_12290 PF00550 Phosphopantetheine attachment site AMQ28_12290 PF08659 KR domain AMQ28_12290 PF00107 Zinc-binding dehydrogenase AMQ28_12290 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_12290 PF02801 Beta-ketoacyl synthase, C-terminal domain AMQ28_12290 PF16197 Ketoacyl-synthetase C-terminal extension AMQ28_12305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMQ28_12305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMQ28_12320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMQ28_12320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMQ28_12325 PF08220 DeoR-like helix-turn-helix domain AMQ28_12325 PF00455 DeoR C terminal sensor domain AMQ28_12330 PF01266 FAD dependent oxidoreductase AMQ28_12330 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMQ28_12335 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMQ28_12335 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMQ28_12340 PF00781 Diacylglycerol kinase catalytic domain AMQ28_12340 PF02142 MGS-like domain AMQ28_12350 PF00166 Chaperonin 10 Kd subunit AMQ28_12355 PF00118 TCP-1/cpn60 chaperonin family AMQ28_12365 PF04170 NlpE N-terminal domain AMQ28_12365 PF17185 NlpE C-terminal OB domain AMQ28_12390 PF03717 Penicillin-binding Protein dimerisation domain AMQ28_12390 PF00905 Penicillin binding protein transpeptidase domain AMQ28_12405 PF05191 Adenylate kinase, active site lid AMQ28_12415 PF10576 Iron-sulfur binding domain of endonuclease III AMQ28_12415 PF00633 Helix-hairpin-helix motif AMQ28_12415 PF00730 HhH-GPD superfamily base excision DNA repair protein AMQ28_12420 PF04060 Putative Fe-S cluster AMQ28_12425 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMQ28_12425 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMQ28_12435 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMQ28_12440 PF02590 Predicted SPOUT methyltransferase AMQ28_12455 PF04389 Peptidase family M28 AMQ28_12460 PF05362 Lon protease (S16) C-terminal proteolytic domain AMQ28_12460 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_12460 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMQ28_12465 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMQ28_12470 PF13411 MerR HTH family regulatory protein AMQ28_12485 PF00390 Malic enzyme, N-terminal domain AMQ28_12485 PF03949 Malic enzyme, NAD binding domain AMQ28_12520 PF00557 Metallopeptidase family M24 AMQ28_12520 PF05195 Aminopeptidase P, N-terminal domain AMQ28_12525 PF01494 FAD binding domain AMQ28_12530 PF01494 FAD binding domain AMQ28_12540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMQ28_12545 PF02021 Uncharacterised protein family UPF0102 AMQ28_12550 PF04972 BON domain AMQ28_12560 PF09297 NADH pyrophosphatase zinc ribbon domain AMQ28_12560 PF00293 NUDIX domain AMQ28_12570 PF00929 Exonuclease AMQ28_12575 PF01476 LysM domain AMQ28_12575 PF01464 Transglycosylase SLT domain AMQ28_12580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMQ28_12585 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_12590 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_12590 PF12911 N-terminal TM domain of oligopeptide transport permease C AMQ28_12595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMQ28_12595 PF00005 ABC transporter AMQ28_12600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_12600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_12620 PF00324 Amino acid permease AMQ28_12635 PF00929 Exonuclease AMQ28_12640 PF01979 Amidohydrolase family AMQ28_12645 PF00563 EAL domain AMQ28_12645 PF01590 GAF domain AMQ28_12645 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_12645 PF00360 Phytochrome region AMQ28_12650 PF00764 Arginosuccinate synthase AMQ28_12655 PF02652 L-lactate permease AMQ28_12660 PF07729 FCD domain AMQ28_12660 PF00392 Bacterial regulatory proteins, gntR family AMQ28_12665 PF01070 FMN-dependent dehydrogenase AMQ28_12670 PF09330 D-lactate dehydrogenase, membrane binding AMQ28_12670 PF01565 FAD binding domain AMQ28_12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_12675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_12685 PF13737 Transposase DDE domain AMQ28_12690 PF00866 Ring hydroxylating beta subunit AMQ28_12695 PF00355 Rieske [2Fe-2S] domain AMQ28_12695 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMQ28_12700 PF02678 Pirin AMQ28_12700 PF17954 Quercetinase C-terminal cupin domain AMQ28_12710 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMQ28_12715 PF05675 Protein of unknown function (DUF817) AMQ28_12735 PF01227 GTP cyclohydrolase I AMQ28_12740 PF01713 Smr domain AMQ28_12745 PF00218 Indole-3-glycerol phosphate synthase AMQ28_12750 PF00591 Glycosyl transferase family, a/b domain AMQ28_12750 PF02885 Glycosyl transferase family, helical bundle domain AMQ28_12755 PF00117 Glutamine amidotransferase class-I AMQ28_12770 PF00171 Aldehyde dehydrogenase family AMQ28_12775 PF04345 Chorismate lyase AMQ28_12780 PF01040 UbiA prenyltransferase family AMQ28_12795 PF00593 TonB dependent receptor AMQ28_12820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMQ28_12820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMQ28_12825 PF01784 NIF3 (NGG1p interacting factor 3) AMQ28_12830 PF17820 PDZ domain AMQ28_12830 PF13180 PDZ domain AMQ28_12855 PF00557 Metallopeptidase family M24 AMQ28_12860 PF00318 Ribosomal protein S2 AMQ28_12865 PF00889 Elongation factor TS AMQ28_12880 PF03330 Lytic transglycolase AMQ28_12880 PF05036 Sporulation related domain AMQ28_12885 PF13406 Transglycosylase SLT domain AMQ28_12895 PF14489 QueF-like protein AMQ28_12895 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMQ28_12900 PF01061 ABC-2 type transporter AMQ28_12905 PF00005 ABC transporter AMQ28_12920 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_12920 PF13359 DDE superfamily endonuclease AMQ28_12925 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_12925 PF13359 DDE superfamily endonuclease AMQ28_12950 PF00464 Serine hydroxymethyltransferase AMQ28_12955 PF14760 Rnk N-terminus AMQ28_12955 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_12960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_12965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_12970 PF07943 Penicillin-binding protein 5, C-terminal domain AMQ28_12970 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_12980 PF03971 Monomeric isocitrate dehydrogenase AMQ28_12985 PF00849 RNA pseudouridylate synthase AMQ28_13070 PF01381 Helix-turn-helix AMQ28_13070 PF00717 Peptidase S24-like AMQ28_13090 PF01695 IstB-like ATP binding protein AMQ28_13095 PF02498 BRO family, N-terminal domain AMQ28_13095 PF10548 P22AR C-terminal domain AMQ28_13150 PF06074 Protein of unknown function (DUF935) AMQ28_13310 PF00589 Phage integrase family AMQ28_13310 PF13356 Arm DNA-binding domain AMQ28_13315 PF00180 Isocitrate/isopropylmalate dehydrogenase AMQ28_13330 PF00155 Aminotransferase class I and II AMQ28_13335 PF01641 SelR domain AMQ28_13340 PF00255 Glutathione peroxidase AMQ28_13345 PF00155 Aminotransferase class I and II AMQ28_13350 PF08335 GlnD PII-uridylyltransferase AMQ28_13350 PF01909 Nucleotidyltransferase domain AMQ28_13350 PF01966 HD domain AMQ28_13355 PF02222 ATP-grasp domain AMQ28_13360 PF05437 Branched-chain amino acid transport protein (AzlD) AMQ28_13365 PF03591 AzlC protein AMQ28_13375 PF13545 Crp-like helix-turn-helix domain AMQ28_13375 PF00027 Cyclic nucleotide-binding domain AMQ28_13385 PF06071 Protein of unknown function (DUF933) AMQ28_13385 PF01926 50S ribosome-binding GTPase AMQ28_13395 PF01037 Lrp/AsnC ligand binding domain AMQ28_13400 PF01709 Transcriptional regulator AMQ28_13405 PF01553 Acyltransferase AMQ28_13440 PF06968 Biotin and Thiamin Synthesis associated domain AMQ28_13440 PF04055 Radical SAM superfamily AMQ28_13445 PF08331 Domain of unknown function (DUF1730) AMQ28_13450 PF01256 Carbohydrate kinase AMQ28_13450 PF03853 YjeF-related protein N-terminus AMQ28_13460 PF02075 Crossover junction endodeoxyribonuclease RuvC AMQ28_13480 PF08803 Putative mono-oxygenase ydhR AMQ28_13485 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMQ28_13485 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMQ28_13485 PF02772 S-adenosylmethionine synthetase, central domain AMQ28_13490 PF02779 Transketolase, pyrimidine binding domain AMQ28_13490 PF00456 Transketolase, thiamine diphosphate binding domain AMQ28_13490 PF02780 Transketolase, C-terminal domain AMQ28_13505 PF04264 YceI-like domain AMQ28_13510 PF01810 LysE type translocator AMQ28_13515 PF00958 GMP synthase C terminal domain AMQ28_13515 PF00117 Glutamine amidotransferase class-I AMQ28_13515 PF02540 NAD synthase AMQ28_13520 PF00171 Aldehyde dehydrogenase family AMQ28_13535 PF00106 short chain dehydrogenase AMQ28_13540 PF00005 ABC transporter AMQ28_13550 PF07690 Major Facilitator Superfamily AMQ28_13555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_13555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_13555 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_13555 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMQ28_13555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_13560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_13560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_13560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_13560 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMQ28_13560 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_13565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_13565 PF01568 Molydopterin dinucleotide binding domain AMQ28_13565 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_13565 PF00384 Molybdopterin oxidoreductase AMQ28_13570 PF12804 MobA-like NTP transferase domain AMQ28_13575 PF06463 Molybdenum Cofactor Synthesis C AMQ28_13575 PF04055 Radical SAM superfamily AMQ28_13585 PF02391 MoaE protein AMQ28_13600 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_13600 PF14497 Glutathione S-transferase, C-terminal domain AMQ28_13625 PF01406 tRNA synthetases class I (C) catalytic domain AMQ28_13625 PF09190 DALR domain AMQ28_13630 PF01380 SIS domain AMQ28_13630 PF00571 CBS domain AMQ28_13645 PF03968 OstA-like protein AMQ28_13650 PF00005 ABC transporter AMQ28_13650 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMQ28_13660 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_13660 PF13359 DDE superfamily endonuclease AMQ28_13665 PF13359 DDE superfamily endonuclease AMQ28_13665 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_13675 PF00005 ABC transporter AMQ28_13675 PF03412 Peptidase C39 family AMQ28_13675 PF00664 ABC transporter transmembrane region AMQ28_13680 PF13533 Biotin-lipoyl like AMQ28_13685 PF01205 Uncharacterized protein family UPF0029 AMQ28_13695 PF00582 Universal stress protein family AMQ28_13700 PF01596 O-methyltransferase AMQ28_13710 PF11953 Domain of unknown function (DUF3470) AMQ28_13710 PF00037 4Fe-4S binding domain AMQ28_13715 PF05188 MutS domain II AMQ28_13715 PF05190 MutS family domain IV AMQ28_13715 PF05192 MutS domain III AMQ28_13715 PF00488 MutS domain V AMQ28_13715 PF01624 MutS domain I AMQ28_13730 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_13735 PF00588 SpoU rRNA Methylase family AMQ28_13740 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMQ28_13740 PF01336 OB-fold nucleic acid binding domain AMQ28_13740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMQ28_13740 PF14579 Helix-hairpin-helix motif AMQ28_13740 PF02811 PHP domain AMQ28_13745 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_13750 PF00005 ABC transporter AMQ28_13750 PF09383 NIL domain AMQ28_13755 PF03180 NLPA lipoprotein AMQ28_13760 PF02844 Phosphoribosylglycinamide synthetase, N domain AMQ28_13760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMQ28_13760 PF02843 Phosphoribosylglycinamide synthetase, C domain AMQ28_13765 PF01808 AICARFT/IMPCHase bienzyme AMQ28_13765 PF02142 MGS-like domain AMQ28_13770 PF02954 Bacterial regulatory protein, Fis family AMQ28_13795 PF01134 Glucose inhibited division protein A AMQ28_13795 PF13932 GidA associated domain AMQ28_13805 PF00158 Sigma-54 interaction domain AMQ28_13805 PF02954 Bacterial regulatory protein, Fis family AMQ28_13805 PF00072 Response regulator receiver domain AMQ28_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_13810 PF00989 PAS fold AMQ28_13810 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_13815 PF00919 Uncharacterized protein family UPF0004 AMQ28_13815 PF18693 TRAM domain AMQ28_13815 PF04055 Radical SAM superfamily AMQ28_13820 PF00696 Amino acid kinase family AMQ28_13825 PF01765 Ribosome recycling factor AMQ28_13830 PF01255 Putative undecaprenyl diphosphate synthase AMQ28_13840 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMQ28_13840 PF13288 DXP reductoisomerase C-terminal domain AMQ28_13840 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMQ28_13845 PF13180 PDZ domain AMQ28_13845 PF17820 PDZ domain AMQ28_13845 PF02163 Peptidase family M50 AMQ28_13850 PF01103 Surface antigen AMQ28_13850 PF07244 Surface antigen variable number repeat AMQ28_13860 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_13860 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMQ28_13865 PF07977 FabA-like domain AMQ28_13870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMQ28_13870 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_13880 PF02631 RecX family AMQ28_13885 PF00154 recA bacterial DNA recombination protein AMQ28_13890 PF01479 S4 domain AMQ28_13895 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_13900 PF00459 Inositol monophosphatase family AMQ28_13910 PF01649 Ribosomal protein S20 AMQ28_13915 PF13460 NAD(P)H-binding AMQ28_13920 PF03737 Aldolase/RraA AMQ28_13930 PF08007 Cupin superfamily protein AMQ28_13935 PF02545 Maf-like protein AMQ28_13945 PF00162 Phosphoglycerate kinase AMQ28_13955 PF01116 Fructose-bisphosphate aldolase class-II AMQ28_13965 PF00881 Nitroreductase family AMQ28_13970 PF00149 Calcineurin-like phosphoesterase AMQ28_13975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMQ28_13980 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMQ28_13980 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_14030 PF05958 tRNA (Uracil-5-)-methyltransferase AMQ28_14040 PF03461 TRCF domain AMQ28_14040 PF00271 Helicase conserved C-terminal domain AMQ28_14040 PF17757 UvrB interaction domain AMQ28_14040 PF00270 DEAD/DEAH box helicase AMQ28_14040 PF02559 CarD-like/TRCF domain AMQ28_14050 PF00211 Adenylate and Guanylate cyclase catalytic domain AMQ28_14055 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_14060 PF00012 Hsp70 protein AMQ28_14065 PF07743 HSCB C-terminal oligomerisation domain AMQ28_14065 PF00226 DnaJ domain AMQ28_14070 PF01521 Iron-sulphur cluster biosynthesis AMQ28_14075 PF01592 NifU-like N terminal domain AMQ28_14080 PF00266 Aminotransferase class-V AMQ28_14085 PF02082 Transcriptional regulator AMQ28_14100 PF00216 Bacterial DNA-binding protein AMQ28_14105 PF09312 SurA N-terminal domain AMQ28_14135 PF00294 pfkB family carbohydrate kinase AMQ28_14145 PF08367 Peptidase M16C associated AMQ28_14145 PF00675 Insulinase (Peptidase family M16) AMQ28_14145 PF05193 Peptidase M16 inactive domain AMQ28_14150 PF02253 Phospholipase A1 AMQ28_14155 PF02386 Cation transport protein AMQ28_14160 PF02254 TrkA-N domain AMQ28_14160 PF02080 TrkA-C domain AMQ28_14170 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_14170 PF00585 C-terminal regulatory domain of Threonine dehydratase AMQ28_14175 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMQ28_14185 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMQ28_14185 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMQ28_14195 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMQ28_14200 PF07724 AAA domain (Cdc48 subfamily) AMQ28_14200 PF02861 Clp amino terminal domain, pathogenicity island component AMQ28_14200 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_14200 PF17871 AAA lid domain AMQ28_14200 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_14205 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMQ28_14210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMQ28_14210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMQ28_14215 PF00440 Bacterial regulatory proteins, tetR family AMQ28_14225 PF00285 Citrate synthase, C-terminal domain AMQ28_14240 PF06418 CTP synthase N-terminus AMQ28_14240 PF00117 Glutamine amidotransferase class-I AMQ28_14245 PF00793 DAHP synthetase I family AMQ28_14250 PF03952 Enolase, N-terminal domain AMQ28_14250 PF00113 Enolase, C-terminal TIM barrel domain AMQ28_14255 PF04977 Septum formation initiator AMQ28_14260 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMQ28_14265 PF01098 Cell cycle protein