locus-tag	class	description
AMQ28_00010	COG1294	oxidase, subunit
AMQ28_00075	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMQ28_00080	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AMQ28_00095	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMQ28_00105	COG0516	GMP reductase activity
AMQ28_00105	COG0517	IMP dehydrogenase activity
AMQ28_00135	COG0612	Peptidase, M16
AMQ28_00140	COG0552	protein localization to endoplasmic reticulum
AMQ28_00180	COG2801	Transposase and inactivated derivatives
AMQ28_00190	COG0741	lytic transglycosylase activity
AMQ28_00190	COG0739	heme binding
AMQ28_00190	COG1196	nuclear chromosome segregation
AMQ28_00195	COG0693	protein deglycase activity
AMQ28_00205	COG1960	acyl-CoA dehydrogenase activity
AMQ28_00210	COG1960	acyl-CoA dehydrogenase activity
AMQ28_00245	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMQ28_00255	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMQ28_00260	COG0730	response to heat
AMQ28_00280	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMQ28_00285	COG2207	Transcriptional regulator
AMQ28_00290	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMQ28_00295	COG1301	dicarboxylic acid transport
AMQ28_00300	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMQ28_00315	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMQ28_00345	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AMQ28_00365	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMQ28_00390	COG1271	oxidase subunit
AMQ28_00395	COG1294	oxidase, subunit
AMQ28_00400	COG1525	nuclease
AMQ28_00440	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMQ28_00450	COG1448	Aminotransferase
AMQ28_00455	COG1113	amino acid transport
AMQ28_00465	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMQ28_00470	COG2814	Major facilitator Superfamily
AMQ28_00475	COG0509	glycine decarboxylation via glycine cleavage system
AMQ28_00490	COG1132	(ABC) transporter
AMQ28_00520	COG2826	transposase and inactivated derivatives, IS30 family
AMQ28_00525	COG0668	transmembrane transport
AMQ28_00530	COG3122	Protein conserved in bacteria
AMQ28_00560	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMQ28_00575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMQ28_00580	COG0183	Belongs to the thiolase family
AMQ28_00585	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMQ28_00590	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMQ28_00595	COG3135	benzoate transporter
AMQ28_00600	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_00605	COG0543	2 iron, 2 sulfur cluster binding
AMQ28_00605	COG0633	Ferredoxin
AMQ28_00610	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AMQ28_00615	COG4638	Rieske (2fe-2S)
AMQ28_00625	COG4829	muconolactone delta-isomerase
AMQ28_00630	COG4948	Mandelate Racemase Muconate Lactonizing
AMQ28_00635	COG0583	DNA-binding transcription factor activity
AMQ28_00640	COG2814	Major facilitator Superfamily
AMQ28_00650	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMQ28_00655	COG1846	Transcriptional regulator
AMQ28_00660	COG2814	Major facilitator Superfamily
AMQ28_00665	COG2031	fatty acid transporter
AMQ28_00670	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMQ28_00695	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMQ28_00705	COG1309	transcriptional regulator
AMQ28_00710	COG0318	PFAM AMP-dependent synthetase and ligase
AMQ28_00730	COG1960	acyl-CoA dehydrogenase activity
AMQ28_00735	COG1024	Enoyl-CoA hydratase
AMQ28_00750	COG1944	ATP diphosphatase activity
AMQ28_00755	COG1414	Transcriptional regulator
AMQ28_00765	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMQ28_00785	COG1335	isochorismatase
AMQ28_00800	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AMQ28_00840	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMQ28_00850	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMQ28_00865	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMQ28_00875	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AMQ28_00880	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMQ28_00885	COG1414	Transcriptional regulator
AMQ28_00890	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMQ28_00895	COG5002	protein histidine kinase activity
AMQ28_00910	COG2351	hydroxyisourate hydrolase activity
AMQ28_00925	COG2175	clavaminate synthase activity
AMQ28_00935	COG3328	transposase activity
AMQ28_00955	COG2855	membrane
AMQ28_00980	COG2814	Major facilitator Superfamily
AMQ28_00995	COG3550	peptidyl-serine autophosphorylation
AMQ28_01005	COG4628	conserved protein (DUF2132)
AMQ28_01020	COG2801	Transposase and inactivated derivatives
AMQ28_01025	COG0596	Alpha beta hydrolase
AMQ28_01070	COG0511	ligase activity, forming carbon-carbon bonds
AMQ28_01075	COG0439	Biotin carboxylase
AMQ28_01110	COG1902	pentaerythritol trinitrate reductase activity
AMQ28_01110	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMQ28_01130	COG0024	Methionine aminopeptidase
AMQ28_01140	COG1114	Component of the transport system for branched-chain amino acids
AMQ28_01185	COG0786	glutamate:sodium symporter activity
AMQ28_01225	COG1278	Cold shock
AMQ28_01280	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMQ28_01290	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMQ28_01295	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMQ28_01320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMQ28_01325	COG2890	protein-(glutamine-N5) methyltransferase activity
AMQ28_01330	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMQ28_01345	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMQ28_01350	COG4682	membrane
AMQ28_01380	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMQ28_01385	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMQ28_01390	COG1845	cytochrome c oxidase, subunit III
AMQ28_01395	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMQ28_01405	COG0360	Binds together with S18 to 16S ribosomal RNA
AMQ28_01420	COG0305	Participates in initiation and elongation during chromosome replication
AMQ28_01425	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMQ28_01435	COG1305	Transglutaminase-like
AMQ28_01445	COG2308	Evidence 4 Homologs of previously reported genes of
AMQ28_01455	COG0069	glutamate synthase activity
AMQ28_01475	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMQ28_01480	COG1454	alcohol dehydrogenase
AMQ28_01485	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMQ28_01505	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_01525	COG0583	DNA-binding transcription factor activity
AMQ28_01530	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMQ28_01540	COG3135	benzoate transporter
AMQ28_01545	COG2076	Multidrug Resistance protein
AMQ28_01550	COG0589	response to stress
AMQ28_01555	COG0589	response to stress
AMQ28_01570	COG0308	aminopeptidase N
AMQ28_01595	COG1253	flavin adenine dinucleotide binding
AMQ28_01615	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMQ28_01620	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMQ28_01625	COG2431	L-lysine efflux transmembrane transporter activity
AMQ28_01630	COG0284	orotidine-5'-phosphate decarboxylase activity
AMQ28_01640	COG0776	regulation of translation
AMQ28_01660	COG0590	tRNA wobble adenosine to inosine editing
AMQ28_01670	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMQ28_01700	COG1309	transcriptional regulator
AMQ28_01705	COG0084	hydrolase, TatD family'
AMQ28_01725	COG1663	tetraacyldisaccharide 4'-kinase activity
AMQ28_01730	COG1132	(ABC) transporter
AMQ28_01740	COG0811	peptide transport
AMQ28_01745	COG1475	DNA binding
AMQ28_01750	COG1192	Involved in chromosome partitioning
AMQ28_01760	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMQ28_01775	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMQ28_01780	COG1923	regulation of RNA biosynthetic process
AMQ28_01790	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMQ28_01795	COG0802	atpase or kinase
AMQ28_01820	COG2707	UPF0756 membrane protein
AMQ28_01830	COG0583	DNA-binding transcription factor activity
AMQ28_01835	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMQ28_01850	COG1643	Atp-dependent helicase
AMQ28_01855	COG0450	alkyl hydroperoxide reductase
AMQ28_01875	COG3634	alkyl hydroperoxide reductase activity
AMQ28_01890	COG2391	methyltransferase activity
AMQ28_01910	COG2070	2-Nitropropane dioxygenase
AMQ28_01940	COG0431	NADPH-dependent FMN reductase
AMQ28_01945	COG0798	PFAM Bile acid sodium symporter
AMQ28_02030	COG1309	transcriptional regulator
AMQ28_02080	COG0352	thiamine-phosphate diphosphorylase activity
AMQ28_02090	COG3025	triphosphatase activity
AMQ28_02110	COG0612	Peptidase, M16
AMQ28_02120	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMQ28_02145	COG2815	serine threonine protein kinase
AMQ28_02145	COG0515	serine threonine protein kinase
AMQ28_02170	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMQ28_02190	COG4783	chaperone-mediated protein folding
AMQ28_02215	COG1286	toxin biosynthetic process
AMQ28_02220	COG0167	dihydroorotate dehydrogenase activity
AMQ28_02245	COG0778	Nitroreductase
AMQ28_02255	COG0513	Belongs to the DEAD box helicase family
AMQ28_02260	COG1278	Cold shock
AMQ28_02270	COG2363	Small membrane protein
AMQ28_02285	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AMQ28_02290	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMQ28_02300	COG0659	secondary active sulfate transmembrane transporter activity
AMQ28_02305	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMQ28_02330	COG0540	Belongs to the ATCase OTCase family
AMQ28_02360	COG1765	OsmC-like protein
AMQ28_02370	COG0667	Aldo Keto reductase
AMQ28_02385	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AMQ28_02400	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMQ28_02405	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMQ28_02410	COG0527	aspartate kinase activity
AMQ28_02420	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMQ28_02430	COG3038	cytochrome b561
AMQ28_02440	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMQ28_02445	COG2252	PERMEase
AMQ28_02450	COG0415	Belongs to the DNA photolyase family
AMQ28_02475	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMQ28_02490	COG1960	acyl-CoA dehydrogenase activity
AMQ28_02495	COG1301	dicarboxylic acid transport
AMQ28_02500	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMQ28_02500	COG0512	Glutamine amidotransferase of anthranilate synthase
AMQ28_02505	COG3139	Protein of unknown function (DUF1315)
AMQ28_02510	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMQ28_02515	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMQ28_02525	COG0494	nUDIX hydrolase
AMQ28_02535	COG0642	Histidine kinase
AMQ28_02540	COG0745	RESPONSE REGULATOR receiver
AMQ28_02555	COG1720	tRNA m6t6A37 methyltransferase activity
AMQ28_02580	COG0789	Transcriptional regulator
AMQ28_02585	COG3634	alkyl hydroperoxide reductase activity
AMQ28_02605	COG1301	dicarboxylic acid transport
AMQ28_02610	COG0583	DNA-binding transcription factor activity
AMQ28_02615	COG1027	Aspartate ammonia-lyase
AMQ28_02635	COG0714	Associated with various cellular activities
AMQ28_02640	COG2879	small protein
AMQ28_02645	COG1966	Carbon starvation protein
AMQ28_02650	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMQ28_02655	COG1509	lysine 2,3-aminomutase activity
AMQ28_02670	COG0254	rRNA binding
AMQ28_02690	COG1067	ATP-dependent peptidase activity
AMQ28_02695	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMQ28_02700	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMQ28_02705	COG0583	DNA-binding transcription factor activity
AMQ28_02730	COG1686	Belongs to the peptidase S11 family
AMQ28_02735	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMQ28_02745	COG0482	sulfurtransferase activity
AMQ28_02750	COG2915	High frequency lysogenization protein hflD homolog
AMQ28_02770	COG0616	signal peptide processing
AMQ28_02775	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMQ28_02785	COG0573	inorganic phosphate transmembrane transporter activity
AMQ28_02790	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMQ28_02795	COG2271	Major facilitator Superfamily
AMQ28_02800	COG0076	glutamate decarboxylase activity
AMQ28_02805	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AMQ28_02815	COG0671	phosphoesterase, PA-phosphatase related
AMQ28_02820	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMQ28_02830	COG1733	regulation of RNA biosynthetic process
AMQ28_02835	COG0702	epimerase
AMQ28_02865	COG0556	nucleotide-excision repair
AMQ28_02895	COG2175	clavaminate synthase activity
AMQ28_02905	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMQ28_02915	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMQ28_02930	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMQ28_02945	COG0681	Belongs to the peptidase S26 family
AMQ28_02960	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMQ28_02980	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMQ28_02990	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMQ28_03005	COG4208	sulfate ABC transporter
AMQ28_03010	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMQ28_03015	COG0583	DNA-binding transcription factor activity
AMQ28_03025	COG2171	N-acyltransferase activity
AMQ28_03030	COG0602	queuosine metabolic process
AMQ28_03035	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMQ28_03050	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMQ28_03055	COG2353	YceI-like domain
AMQ28_03060	COG1051	belongs to the nudix hydrolase family
AMQ28_03060	COG1056	cytidyltransferase-related domain
AMQ28_03065	COG1024	Enoyl-CoA hydratase
AMQ28_03070	COG0778	Nitroreductase
AMQ28_03075	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AMQ28_03085	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMQ28_03085	COG0047	phosphoribosylformylglycinamidine synthase activity
AMQ28_03100	COG0632	four-way junction helicase activity
AMQ28_03105	COG2255	four-way junction helicase activity
AMQ28_03120	COG0824	Thioesterase
AMQ28_03140	COG0823	Involved in the tonB-independent uptake of proteins
AMQ28_03145	COG2885	chlorophyll binding
AMQ28_03160	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMQ28_03195	COG0628	permease
AMQ28_03205	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMQ28_03225	COG2333	competence protein COMEC
AMQ28_03225	COG0658	competence protein
AMQ28_03230	COG1136	(ABC) transporter
AMQ28_03235	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMQ28_03245	COG0697	spore germination
AMQ28_03250	COG1671	Belongs to the UPF0178 family
AMQ28_03270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMQ28_03285	COG1301	dicarboxylic acid transport
AMQ28_03305	COG1280	lysine exporter protein (LysE YggA)
AMQ28_03320	COG1522	sequence-specific DNA binding
AMQ28_03330	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AMQ28_03345	COG0019	diaminopimelate decarboxylase activity
AMQ28_03355	COG1113	amino acid transport
AMQ28_03405	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMQ28_03415	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMQ28_03420	COG5001	Diguanylate cyclase
AMQ28_03420	COG1716	ATPase activity
AMQ28_03445	COG1960	acyl-CoA dehydrogenase activity
AMQ28_03450	COG0583	DNA-binding transcription factor activity
AMQ28_03455	COG4221	oxidoreductase activity
AMQ28_03470	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMQ28_03475	COG4149	molybdate abc transporter
AMQ28_03480	COG0725	ABC transporter, periplasmic molybdate-binding protein
AMQ28_03485	COG0303	'Molybdopterin
AMQ28_03490	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMQ28_03490	COG0315	cyclic pyranopterin monophosphate synthase activity
AMQ28_03500	COG0314	molybdopterin synthase activity
AMQ28_03510	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMQ28_03520	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMQ28_03530	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_03535	COG2610	gluconate transmembrane transporter activity
AMQ28_03545	COG0583	DNA-binding transcription factor activity
AMQ28_03550	COG0583	DNA-binding transcription factor activity
AMQ28_03555	COG2610	gluconate transmembrane transporter activity
AMQ28_03565	COG1733	regulation of RNA biosynthetic process
AMQ28_03570	COG3385	transposase activity
AMQ28_03595	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_03610	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMQ28_03615	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AMQ28_03625	COG0037	tRNA processing
AMQ28_03630	COG1196	nuclear chromosome segregation
AMQ28_03630	COG0739	heme binding
AMQ28_03630	COG0741	lytic transglycosylase activity
AMQ28_03635	COG0501	Belongs to the peptidase M48B family
AMQ28_03650	COG2239	Acts as a magnesium transporter
AMQ28_03660	COG0584	glycerophosphoryl diester phosphodiesterase
AMQ28_03675	COG1253	flavin adenine dinucleotide binding
AMQ28_03680	COG2851	Citrate transporter
AMQ28_03710	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMQ28_03715	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMQ28_03720	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMQ28_03740	COG0505	Belongs to the CarA family
AMQ28_03745	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMQ28_03760	COG0110	maltose O-acetyltransferase activity
AMQ28_03775	COG3695	enzyme binding
AMQ28_03790	COG2321	neutral zinc metallopeptidase
AMQ28_03795	COG2354	Protein conserved in bacteria
AMQ28_03820	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMQ28_03825	COG1773	rubredoxin
AMQ28_03830	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMQ28_03840	COG0583	DNA-binding transcription factor activity
AMQ28_03860	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AMQ28_03865	COG4181	ATPase activity
AMQ28_03890	COG4771	TonB-dependent receptor
AMQ28_03910	COG0306	phosphate transporter
AMQ28_03920	COG0242	peptide deformylase activity
AMQ28_03960	COG1215	transferase activity, transferring glycosyl groups
AMQ28_03985	COG0454	-acetyltransferase
AMQ28_03990	COG2203	Gaf domain
AMQ28_03990	COG2199	diguanylate cyclase activity
AMQ28_04000	COG4681	YaeQ
AMQ28_04005	COG0523	cobalamin synthesis protein
AMQ28_04015	COG1607	acyl-coa hydrolase
AMQ28_04020	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMQ28_04030	COG0786	glutamate:sodium symporter activity
AMQ28_04045	COG2814	Major facilitator Superfamily
AMQ28_04050	COG1289	transmembrane transporter activity
AMQ28_04060	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMQ28_04115	COG1376	ErfK ybiS ycfS ynhG family protein
AMQ28_04120	COG2832	Protein of unknown function (DUF454)
AMQ28_04155	COG0840	transmembrane signaling receptor activity
AMQ28_04190	COG0442	prolyl-tRNA aminoacylation
AMQ28_04230	COG0489	protein tyrosine kinase activity
AMQ28_04250	COG0582	viral genome integration into host DNA
AMQ28_04335	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMQ28_04340	COG0629	single-stranded DNA binding
AMQ28_04370	COG3328	transposase activity
AMQ28_04390	COG2814	Major facilitator Superfamily
AMQ28_04395	COG1566	PFAM secretion protein HlyD family protein
AMQ28_04400	COG2050	protein possibly involved in aromatic compounds catabolism
AMQ28_04410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMQ28_04415	COG1090	epimerase
AMQ28_04455	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AMQ28_04460	COG2081	HI0933 family
AMQ28_04465	COG0668	transmembrane transport
AMQ28_04485	COG0583	DNA-binding transcription factor activity
AMQ28_04500	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMQ28_04510	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMQ28_04515	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMQ28_04520	COG0713	ATP synthesis coupled electron transport
AMQ28_04530	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMQ28_04545	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AMQ28_04555	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMQ28_04555	COG0649	NAD binding
AMQ28_04565	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMQ28_04580	COG2205	protein histidine kinase activity
AMQ28_04585	COG0745	RESPONSE REGULATOR receiver
AMQ28_04595	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMQ28_04600	COG2084	Dehydrogenase
AMQ28_04610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMQ28_04615	COG0583	DNA-binding transcription factor activity
AMQ28_04625	COG0129	dihydroxy-acid dehydratase activity
AMQ28_04630	COG1012	belongs to the aldehyde dehydrogenase family
AMQ28_04640	COG2706	6-phosphogluconolactonase activity
AMQ28_04645	COG1012	belongs to the aldehyde dehydrogenase family
AMQ28_04665	COG2186	Transcriptional regulator
AMQ28_04670	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMQ28_04675	COG1652	LysM domain
AMQ28_04680	COG2885	chlorophyll binding
AMQ28_04680	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AMQ28_04690	COG0183	Belongs to the thiolase family
AMQ28_04720	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMQ28_04725	COG2207	Transcriptional regulator
AMQ28_04730	COG0183	Belongs to the thiolase family
AMQ28_04735	COG1024	Enoyl-CoA hydratase
AMQ28_04735	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMQ28_04745	COG2153	protein acetylation
AMQ28_04755	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMQ28_04770	COG2233	PERMEase
AMQ28_04780	COG0833	amino acid
AMQ28_04790	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_04800	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMQ28_04805	COG1399	metal-binding, possibly nucleic acid-binding protein
AMQ28_04810	COG3101	peptidyl-lysine hydroxylation
AMQ28_04815	COG0009	L-threonylcarbamoyladenylate synthase
AMQ28_04825	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMQ28_04830	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMQ28_04845	COG2226	methyltransferase
AMQ28_04860	COG2226	methyltransferase
AMQ28_04860	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMQ28_04860	COG0596	Alpha beta hydrolase
AMQ28_04865	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMQ28_04870	COG2193	ferroxidase activity
AMQ28_04890	COG3335	DDE superfamily endonuclease
AMQ28_04895	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMQ28_04900	COG2801	Transposase and inactivated derivatives
AMQ28_04935	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMQ28_04950	COG1196	nuclear chromosome segregation
AMQ28_04960	COG0730	response to heat
AMQ28_04975	COG3545	Serine hydrolase
AMQ28_04980	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMQ28_05020	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMQ28_05035	COG2132	Multicopper oxidase
AMQ28_05045	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMQ28_05070	COG1968	undecaprenyl-diphosphatase activity
AMQ28_05075	COG1214	PFAM Peptidase M22, glycoprotease
AMQ28_05085	COG0494	nUDIX hydrolase
AMQ28_05135	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMQ28_05140	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMQ28_05205	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMQ28_05210	COG1764	response to oxidative stress
AMQ28_05250	COG0037	tRNA processing
AMQ28_05260	COG0248	Ppx GppA phosphatase
AMQ28_05285	COG0072	phenylalanine-tRNA ligase activity
AMQ28_05290	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMQ28_05305	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMQ28_05310	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMQ28_05315	COG1162	GTPase activity
AMQ28_05325	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMQ28_05330	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMQ28_05345	COG0084	hydrolase, TatD family'
AMQ28_05360	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMQ28_05390	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AMQ28_05455	COG0793	Belongs to the peptidase S41A family
AMQ28_05470	COG2267	carboxylic ester hydrolase activity
AMQ28_05485	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AMQ28_05490	COG0280	phosphate acetyltransferase
AMQ28_05490	COG0857	belongs to the CobB CobQ family
AMQ28_05495	COG2890	protein-(glutamine-N5) methyltransferase activity
AMQ28_05505	COG2801	Transposase and inactivated derivatives
AMQ28_05525	COG0740	serine-type endopeptidase activity
AMQ28_05535	COG4771	TonB-dependent receptor
AMQ28_05540	COG4774	siderophore transport
AMQ28_05550	COG4774	siderophore transport
AMQ28_05555	COG3128	pkhd-type hydroxylase
AMQ28_05565	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMQ28_05570	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMQ28_05575	COG2813	Specifically methylates the guanine in position
AMQ28_05575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMQ28_05585	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMQ28_05635	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMQ28_05650	COG1238	metal cluster binding
AMQ28_05660	COG0625	glutathione transferase activity
AMQ28_05675	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMQ28_05680	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMQ28_05685	COG0318	PFAM AMP-dependent synthetase and ligase
AMQ28_05690	COG3028	Belongs to the UPF0307 family
AMQ28_05695	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMQ28_05700	COG1660	Displays ATPase and GTPase activities
AMQ28_05705	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMQ28_05715	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMQ28_05720	COG0617	tRNA 3'-terminal CCA addition
AMQ28_05725	COG1596	polysaccharide export
AMQ28_05725	COG1555	photosystem II stabilization
AMQ28_05730	COG3956	TIGRFAM MazG family protein
AMQ28_05745	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMQ28_05760	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AMQ28_05765	COG1426	Protein conserved in bacteria
AMQ28_05825	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMQ28_05830	COG0440	acetolactate synthase activity
AMQ28_05835	COG0028	Belongs to the TPP enzyme family
AMQ28_05860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMQ28_05865	COG0577	efflux transmembrane transporter activity
AMQ28_05865	COG1136	(ABC) transporter
AMQ28_05870	COG1538	Outer membrane efflux protein
AMQ28_05880	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMQ28_05920	COG0788	formyltetrahydrofolate deformylase activity
AMQ28_05935	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AMQ28_05940	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMQ28_05945	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMQ28_05945	COG4651	solute:proton antiporter activity
AMQ28_05970	COG0210	DNA helicase
AMQ28_05975	COG1929	Belongs to the glycerate kinase type-1 family
AMQ28_06005	COG2900	Belongs to the SlyX family
AMQ28_06015	COG1560	Kdo2-lipid A biosynthetic process
AMQ28_06075	COG0473	3-isopropylmalate dehydrogenase activity
AMQ28_06090	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMQ28_06105	COG0583	DNA-binding transcription factor activity
AMQ28_06120	COG2197	response regulator
AMQ28_06135	COG2026	Addiction module toxin, RelE StbE family
AMQ28_06150	COG2801	Transposase and inactivated derivatives
AMQ28_06160	COG3328	transposase activity
AMQ28_06175	COG2826	transposase and inactivated derivatives, IS30 family
AMQ28_06205	COG1960	acyl-CoA dehydrogenase activity
AMQ28_06215	COG0753	catalase activity
AMQ28_06230	COG0583	DNA-binding transcription factor activity
AMQ28_06240	COG0564	pseudouridine synthase activity
AMQ28_06245	COG1530	ribonuclease E activity
AMQ28_06275	COG1983	PspC domain protein
AMQ28_06290	COG0751	glycine-tRNA ligase activity
AMQ28_06315	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMQ28_06345	COG0493	'glutamate synthase
AMQ28_06355	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMQ28_06360	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMQ28_06375	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AMQ28_06385	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AMQ28_06385	COG0644	oxidoreductase
AMQ28_06395	COG0425	Belongs to the sulfur carrier protein TusA family
AMQ28_06400	COG4535	Mg2 and Co2 transporter CorC
AMQ28_06405	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMQ28_06425	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMQ28_06435	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMQ28_06440	COG2203	Gaf domain
AMQ28_06440	COG2199	diguanylate cyclase activity
AMQ28_06445	COG0484	heat shock protein binding
AMQ28_06450	COG0789	Transcriptional regulator
AMQ28_06460	COG0598	Magnesium transport protein CorA
AMQ28_06465	COG1185	polyribonucleotide nucleotidyltransferase activity
AMQ28_06480	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMQ28_06485	COG1074	ATP-dependent DNA helicase activity
AMQ28_06490	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMQ28_06520	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMQ28_06530	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMQ28_06540	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMQ28_06540	COG2111	Na H antiporter
AMQ28_06545	COG1006	Multisubunit Na H antiporter MnhC subunit
AMQ28_06550	COG0651	ATP synthesis coupled electron transport
AMQ28_06560	COG2212	antiporter activity
AMQ28_06570	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMQ28_06575	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMQ28_06580	COG0195	Participates in both transcription termination and antitermination
AMQ28_06585	COG0779	Required for maturation of 30S ribosomal subunits
AMQ28_06635	COG0237	dephospho-CoA kinase activity
AMQ28_06645	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMQ28_06650	COG3123	guanosine phosphorylase activity
AMQ28_06655	COG0497	DNA recombination
AMQ28_06665	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMQ28_06680	COG1289	transmembrane transporter activity
AMQ28_06695	COG1132	(ABC) transporter
AMQ28_06705	COG1538	Outer membrane efflux protein
AMQ28_06720	COG0494	nUDIX hydrolase
AMQ28_06725	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AMQ28_06730	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMQ28_06735	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMQ28_06740	COG0772	Belongs to the SEDS family
AMQ28_06765	COG4974	Belongs to the 'phage' integrase family
AMQ28_06770	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMQ28_06780	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AMQ28_06785	COG1686	Belongs to the peptidase S11 family
AMQ28_06790	COG2197	response regulator
AMQ28_06805	COG0793	Belongs to the peptidase S41A family
AMQ28_06810	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AMQ28_06815	COG0795	lipopolysaccharide-transporting ATPase activity
AMQ28_06820	COG0795	lipopolysaccharide-transporting ATPase activity
AMQ28_06845	COG0586	Pfam SNARE associated Golgi protein
AMQ28_06860	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMQ28_06860	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMQ28_06870	COG0004	ammonium transporteR
AMQ28_06875	COG0347	Belongs to the P(II) protein family
AMQ28_06885	COG0606	chelatase, subunit chli
AMQ28_06905	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMQ28_06920	COG0318	PFAM AMP-dependent synthetase and ligase
AMQ28_06930	COG0477	Major facilitator Superfamily
AMQ28_06935	COG2860	membrane
AMQ28_06945	COG1253	flavin adenine dinucleotide binding
AMQ28_06965	COG2814	Major facilitator Superfamily
AMQ28_06975	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMQ28_06995	COG2814	Major facilitator Superfamily
AMQ28_07025	COG1309	transcriptional regulator
AMQ28_07055	COG0758	DNA mediated transformation
AMQ28_07065	COG0697	spore germination
AMQ28_07080	COG0386	Belongs to the glutathione peroxidase family
AMQ28_07120	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMQ28_07160	COG1121	(ABC) transporter
AMQ28_07165	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMQ28_07175	COG2837	iron assimilation
AMQ28_07180	COG0436	Aminotransferase
AMQ28_07185	COG0534	Mate efflux family protein
AMQ28_07230	COG0745	RESPONSE REGULATOR receiver
AMQ28_07230	COG3706	GGDEF domain
AMQ28_07235	COG1715	Restriction endonuclease
AMQ28_07240	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMQ28_07240	COG0519	Catalyzes the synthesis of GMP from XMP
AMQ28_07250	COG2259	Doxx family
AMQ28_07255	COG0586	Pfam SNARE associated Golgi protein
AMQ28_07270	COG1192	Involved in chromosome partitioning
AMQ28_07280	COG0271	Belongs to the BolA IbaG family
AMQ28_07315	COG3756	Protein conserved in bacteria
AMQ28_07330	COG0494	nUDIX hydrolase
AMQ28_07405	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AMQ28_07445	COG3316	Transposase and inactivated derivatives
AMQ28_07465	COG0830	nickel cation binding
AMQ28_07480	COG0829	nickel cation binding
AMQ28_07485	COG0831	urea catabolic process
AMQ28_07495	COG0804	urea catabolic process
AMQ28_07520	COG0640	Transcriptional regulator
AMQ28_07530	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMQ28_07540	COG0745	RESPONSE REGULATOR receiver
AMQ28_07545	COG0642	Histidine kinase
AMQ28_07585	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMQ28_07590	COG2814	Major facilitator Superfamily
AMQ28_07610	COG2223	nitrite transmembrane transporter activity
AMQ28_07645	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMQ28_07650	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMQ28_07655	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMQ28_07660	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AMQ28_07665	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMQ28_07670	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMQ28_07675	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMQ28_07680	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMQ28_07695	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMQ28_07705	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMQ28_07725	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMQ28_07740	COG0438	transferase activity, transferring glycosyl groups
AMQ28_07765	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AMQ28_07795	COG0400	carboxylic ester hydrolase activity
AMQ28_07820	COG2818	Glycosylase
AMQ28_07825	COG1064	alcohol dehydrogenase
AMQ28_07830	COG0583	DNA-binding transcription factor activity
AMQ28_07865	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMQ28_07870	COG1309	transcriptional regulator
AMQ28_07880	COG2233	PERMEase
AMQ28_07885	COG0583	DNA-binding transcription factor activity
AMQ28_07905	COG0129	dihydroxy-acid dehydratase activity
AMQ28_07925	COG0428	transporter
AMQ28_07930	COG0733	neurotransmitter:sodium symporter activity
AMQ28_07970	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMQ28_08000	COG0443	Heat shock 70 kDa protein
AMQ28_08005	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AMQ28_08070	COG0488	(ABC) transporter
AMQ28_08090	COG0592	DNA-directed DNA polymerase activity
AMQ28_08095	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMQ28_08100	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AMQ28_08105	COG0594	ribonuclease P activity
AMQ28_08110	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMQ28_08115	COG0706	membrane insertase activity
AMQ28_08130	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMQ28_08145	COG0402	S-adenosylhomocysteine deaminase activity
AMQ28_08150	COG0861	Integral membrane protein TerC family
AMQ28_08160	COG2388	GCN5-related N-acetyl-transferase
AMQ28_08165	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMQ28_08180	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AMQ28_08185	COG2951	lytic endotransglycosylase activity
AMQ28_08190	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMQ28_08195	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMQ28_08225	COG2133	pyrroloquinoline quinone binding
AMQ28_08235	COG1047	Peptidyl-prolyl cis-trans
AMQ28_08245	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMQ28_08250	COG0196	riboflavin kinase activity
AMQ28_08265	COG1309	transcriptional regulator
AMQ28_08270	COG1116	anion transmembrane transporter activity
AMQ28_08275	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMQ28_08295	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMQ28_08300	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMQ28_08305	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMQ28_08310	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AMQ28_08310	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMQ28_08325	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_08330	COG0546	phosphoglycolate phosphatase activity
AMQ28_08335	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMQ28_08360	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMQ28_08380	COG2983	Belongs to the UPF0260 family
AMQ28_08385	COG3300	MHYT domain
AMQ28_08385	COG5001	Diguanylate cyclase
AMQ28_08390	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMQ28_08405	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMQ28_08410	COG1335	isochorismatase
AMQ28_08415	COG0385	Bile acid
AMQ28_08425	COG3830	Belongs to the UPF0237 family
AMQ28_08425	COG0560	Phosphoserine phosphatase
AMQ28_08475	COG2733	membrane
AMQ28_08495	COG2918	glutathione biosynthetic process
AMQ28_08510	COG3150	esterase
AMQ28_08550	COG3706	GGDEF domain
AMQ28_08555	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMQ28_08570	COG1393	Belongs to the ArsC family
AMQ28_08575	COG0708	Exodeoxyribonuclease III
AMQ28_08580	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMQ28_08595	COG1846	Transcriptional regulator
AMQ28_08600	COG0386	Belongs to the glutathione peroxidase family
AMQ28_08605	COG0189	ligase activity
AMQ28_08615	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMQ28_08625	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMQ28_08665	COG2119	membrane
AMQ28_08690	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMQ28_08710	COG1902	pentaerythritol trinitrate reductase activity
AMQ28_08715	COG1519	Transferase
AMQ28_08720	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMQ28_08725	COG0668	transmembrane transport
AMQ28_08735	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMQ28_08755	COG0431	NADPH-dependent FMN reductase
AMQ28_08770	COG2205	protein histidine kinase activity
AMQ28_08770	COG2198	Histidine kinase
AMQ28_08770	COG0784	Response regulator, receiver
AMQ28_08775	COG3162	membrane
AMQ28_08780	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMQ28_08790	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMQ28_08820	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AMQ28_08820	COG0351	phosphomethylpyrimidine kinase
AMQ28_08820	COG0352	thiamine-phosphate diphosphorylase activity
AMQ28_08830	COG2814	Major facilitator Superfamily
AMQ28_08880	COG3328	transposase activity
AMQ28_08980	COG0633	Ferredoxin
AMQ28_09030	COG0629	single-stranded DNA binding
AMQ28_09040	COG0450	alkyl hydroperoxide reductase
AMQ28_09050	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AMQ28_09100	COG3177	Filamentation induced by cAMP protein fic
AMQ28_09125	COG3158	transport of potassium into the cell
AMQ28_09160	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMQ28_09185	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMQ28_09260	COG2826	transposase and inactivated derivatives, IS30 family
AMQ28_09285	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMQ28_09300	COG3275	phosphorelay sensor kinase activity
AMQ28_09310	COG0181	hydroxymethylbilane synthase activity
AMQ28_09330	COG0824	Thioesterase
AMQ28_09355	COG1716	ATPase activity
AMQ28_09360	COG0546	phosphoglycolate phosphatase activity
AMQ28_09395	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMQ28_09405	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMQ28_09410	COG0081	regulation of translation
AMQ28_09415	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMQ28_09420	COG0222	ribosome binding
AMQ28_09425	COG0085	RNA polymerase activity
AMQ28_09430	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMQ28_09450	COG2056	Na+-H+ antiporter family
AMQ28_09470	COG0326	Molecular chaperone. Has ATPase activity
AMQ28_09500	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AMQ28_09510	COG0427	acetyl-CoA hydrolase
AMQ28_09520	COG0745	RESPONSE REGULATOR receiver
AMQ28_09535	COG4221	oxidoreductase activity
AMQ28_09545	COG0488	(ABC) transporter
AMQ28_09570	COG0653	protein targeting
AMQ28_09675	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMQ28_09680	COG0275	rRNA processing
AMQ28_09690	COG0768	penicillin binding
AMQ28_09695	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMQ28_09700	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMQ28_09705	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMQ28_09710	COG2226	methyltransferase
AMQ28_09760	COG0070	glutamate synthase
AMQ28_09760	COG0069	glutamate synthase activity
AMQ28_09760	COG0067	glutamate synthase
AMQ28_09765	COG0493	'glutamate synthase
AMQ28_09775	COG1704	LemA family
AMQ28_09780	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AMQ28_09805	COG3307	-O-antigen
AMQ28_09815	COG2906	2 iron, 2 sulfur cluster binding
AMQ28_09825	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMQ28_09830	COG1758	RNA polymerase activity
AMQ28_09835	COG0194	GDP metabolic process
AMQ28_09880	COG0228	four-way junction DNA binding
AMQ28_09885	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMQ28_09895	COG0335	large ribosomal subunit rRNA binding
AMQ28_09905	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
AMQ28_09910	COG5380	lipid catabolic process
AMQ28_09915	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMQ28_09935	COG5006	permease, DMT superfamily
AMQ28_09940	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMQ28_09945	COG0277	FAD linked oxidase domain protein
AMQ28_09960	COG1289	transmembrane transporter activity
AMQ28_09965	COG2032	superoxide dismutase activity
AMQ28_09970	COG0628	permease
AMQ28_09975	COG1192	Involved in chromosome partitioning
AMQ28_09985	COG2226	methyltransferase
AMQ28_10005	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMQ28_10010	COG0254	rRNA binding
AMQ28_10015	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMQ28_10020	COG0534	Mate efflux family protein
AMQ28_10030	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMQ28_10035	COG1960	acyl-CoA dehydrogenase activity
AMQ28_10070	COG0513	Belongs to the DEAD box helicase family
AMQ28_10075	COG1127	ABC transporter
AMQ28_10080	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMQ28_10085	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMQ28_10090	COG2854	intermembrane phospholipid transfer
AMQ28_10100	COG0598	Magnesium transport protein CorA
AMQ28_10115	COG1040	competence protein
AMQ28_10120	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMQ28_10130	COG2937	Belongs to the GPAT DAPAT family
AMQ28_10135	COG1946	Acyl-CoA thioesterase
AMQ28_10140	COG1301	dicarboxylic acid transport
AMQ28_10155	COG1959	2 iron, 2 sulfur cluster binding
AMQ28_10160	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMQ28_10160	COG1017	nitric oxide dioxygenase activity
AMQ28_10165	COG0433	COG0433 Predicted ATPase
AMQ28_10180	COG0051	transcription antitermination factor activity, RNA binding
AMQ28_10190	COG0088	Forms part of the polypeptide exit tunnel
AMQ28_10195	COG0089	rRNA binding
AMQ28_10205	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMQ28_10210	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AMQ28_10215	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMQ28_10235	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AMQ28_10240	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMQ28_10245	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMQ28_10250	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AMQ28_10255	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMQ28_10270	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AMQ28_10290	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AMQ28_10300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AMQ28_10305	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AMQ28_10310	COG0202	RNA polymerase activity
AMQ28_10315	COG0203	ribosomal protein L17
AMQ28_10320	COG2072	flavoprotein involved in K transport
AMQ28_10325	COG1960	acyl-CoA dehydrogenase activity
AMQ28_10330	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AMQ28_10360	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AMQ28_10365	COG0339	signal peptide processing
AMQ28_10370	COG0557	exoribonuclease II activity
AMQ28_10405	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMQ28_10410	COG1295	ribonuclease BN
AMQ28_10455	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMQ28_10460	COG1702	phosphate starvation-inducible protein PhoH
AMQ28_10465	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMQ28_10470	COG1196	nuclear chromosome segregation
AMQ28_10470	COG0741	lytic transglycosylase activity
AMQ28_10470	COG0739	heme binding
AMQ28_10480	COG0039	L-malate dehydrogenase activity
AMQ28_10505	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMQ28_10510	COG1183	phosphatidylcholine synthase activity
AMQ28_10555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMQ28_10555	COG3453	Protein conserved in bacteria
AMQ28_10570	COG1607	acyl-coa hydrolase
AMQ28_10615	COG3781	membrane
AMQ28_10620	COG2003	Belongs to the UPF0758 family
AMQ28_10625	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMQ28_10630	COG3783	Cytochrome b(562)
AMQ28_10635	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMQ28_10700	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AMQ28_10750	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AMQ28_10775	COG2814	Major facilitator Superfamily
AMQ28_10780	COG0697	spore germination
AMQ28_10785	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMQ28_10790	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMQ28_10795	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMQ28_10810	COG3622	Belongs to the hyi family
AMQ28_10815	COG2084	Dehydrogenase
AMQ28_10820	COG1024	Enoyl-CoA hydratase
AMQ28_10845	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMQ28_10860	COG1862	Preprotein translocase
AMQ28_10870	COG1704	LemA family
AMQ28_10880	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMQ28_10890	COG0784	Response regulator, receiver
AMQ28_10890	COG2205	protein histidine kinase activity
AMQ28_10890	COG5002	protein histidine kinase activity
AMQ28_10895	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMQ28_10910	COG0726	polysaccharide deacetylase
AMQ28_10915	COG0297	glycogen (starch) synthase activity
AMQ28_10930	COG1091	dTDP-4-dehydrorhamnose reductase activity
AMQ28_10950	COG2826	transposase and inactivated derivatives, IS30 family
AMQ28_10955	COG1215	transferase activity, transferring glycosyl groups
AMQ28_10975	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMQ28_11010	COG1960	acyl-CoA dehydrogenase activity
AMQ28_11015	COG1960	acyl-CoA dehydrogenase activity
AMQ28_11025	COG2205	protein histidine kinase activity
AMQ28_11030	COG0745	RESPONSE REGULATOR receiver
AMQ28_11040	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMQ28_11055	COG2096	Adenosyltransferase
AMQ28_11060	COG4206	TonB-dependent receptor
AMQ28_11070	COG0133	tryptophan synthase activity
AMQ28_11100	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AMQ28_11105	COG0285	dihydrofolate synthase activity
AMQ28_11125	COG0450	alkyl hydroperoxide reductase
AMQ28_11140	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AMQ28_11220	COG2969	positive regulation of protein catabolic process
AMQ28_11225	COG0625	glutathione transferase activity
AMQ28_11230	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMQ28_11235	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMQ28_11240	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMQ28_11245	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMQ28_11250	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMQ28_11275	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMQ28_11285	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMQ28_11290	COG1408	metallophosphoesterase
AMQ28_11300	COG0477	Major facilitator Superfamily
AMQ28_11305	COG1272	protein, Hemolysin III
AMQ28_11315	COG4772	TonB-dependent receptor
AMQ28_11345	COG0354	folic acid binding
AMQ28_11365	COG2814	Major facilitator Superfamily
AMQ28_11370	COG0477	Major facilitator Superfamily
AMQ28_11375	COG0564	pseudouridine synthase activity
AMQ28_11390	COG2824	Alkylphosphonate utilization operon protein PhnA
AMQ28_11400	COG0352	thiamine-phosphate diphosphorylase activity
AMQ28_11400	COG0351	phosphomethylpyrimidine kinase
AMQ28_11400	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AMQ28_11425	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMQ28_11450	COG0456	acetyltransferase
AMQ28_11460	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMQ28_11465	COG0492	ferredoxin-NADP+ reductase activity
AMQ28_11470	COG1674	ftsk spoiiie
AMQ28_11485	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AMQ28_11495	COG0850	regulation of cytokinetic process
AMQ28_11505	COG0204	Acyl-transferase
AMQ28_11510	COG2885	chlorophyll binding
AMQ28_11520	COG0756	dUTP diphosphatase activity
AMQ28_11525	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMQ28_11535	COG0121	glutamine amidotransferase
AMQ28_11550	COG2914	Belongs to the UPF0125 (RnfH) family
AMQ28_11555	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMQ28_11560	COG0735	belongs to the Fur family
AMQ28_11585	COG0420	3'-5' exonuclease activity
AMQ28_11590	COG3706	GGDEF domain
AMQ28_11590	COG5001	Diguanylate cyclase
AMQ28_11590	COG4251	negative regulation of phosphorylation
AMQ28_11590	COG2203	Gaf domain
AMQ28_11625	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMQ28_11625	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMQ28_11645	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AMQ28_11685	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMQ28_11695	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMQ28_11700	COG1077	Cell shape determining protein MreB Mrl
AMQ28_11705	COG1792	Involved in formation and maintenance of cell shape
AMQ28_11715	COG0424	maF-like protein
AMQ28_11720	COG1530	ribonuclease E activity
AMQ28_11725	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMQ28_11760	COG1028	Short-chain dehydrogenase reductase Sdr
AMQ28_11765	COG0477	Major facilitator Superfamily
AMQ28_11785	COG1113	amino acid transport
AMQ28_11790	COG2828	Protein conserved in bacteria
AMQ28_11795	COG0142	geranyltranstransferase activity
AMQ28_11800	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMQ28_11815	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMQ28_11835	COG2194	sulfuric ester hydrolase activity
AMQ28_11840	COG0745	RESPONSE REGULATOR receiver
AMQ28_11845	COG0642	Histidine kinase
AMQ28_11855	COG0004	ammonium transporteR
AMQ28_11860	COG1126	abc transporter atp-binding protein
AMQ28_11865	COG0765	amino acid transport
AMQ28_11870	COG0765	amino acid transport
AMQ28_11880	COG2323	membrane
AMQ28_11905	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMQ28_11910	COG0525	valine-tRNA ligase activity
AMQ28_11920	COG4221	oxidoreductase activity
AMQ28_11930	COG0393	Putative heavy-metal-binding
AMQ28_11935	COG1538	Outer membrane efflux protein
AMQ28_11945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMQ28_11950	COG0671	phosphoesterase, PA-phosphatase related
AMQ28_11965	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMQ28_11985	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMQ28_12000	COG1648	precorrin-2 dehydrogenase activity
AMQ28_12000	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMQ28_12005	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMQ28_12010	COG0531	amino acid
AMQ28_12025	COG0321	lipoyl(octanoyl) transferase activity
AMQ28_12030	COG2921	Belongs to the UPF0250 family
AMQ28_12050	COG0586	Pfam SNARE associated Golgi protein
AMQ28_12075	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMQ28_12080	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMQ28_12110	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMQ28_12125	COG0358	DNA primase activity
AMQ28_12150	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMQ28_12155	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMQ28_12160	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMQ28_12215	COG2072	flavoprotein involved in K transport
AMQ28_12225	COG2009	succinate dehydrogenase
AMQ28_12230	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMQ28_12235	COG1053	succinate dehydrogenase
AMQ28_12240	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMQ28_12260	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMQ28_12270	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMQ28_12275	COG0175	sulfate reduction
AMQ28_12310	COG2264	protein methyltransferase activity
AMQ28_12320	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMQ28_12335	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AMQ28_12340	COG1597	lipid kinase activity
AMQ28_12340	COG1803	Methylglyoxal synthase
AMQ28_12365	COG3015	lipoprotein NlpE involved in copper resistance
AMQ28_12385	COG0742	ribosomal rna small subunit methyltransferase
AMQ28_12390	COG0768	penicillin binding
AMQ28_12415	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMQ28_12420	COG2878	Part of a membrane complex involved in electron transport
AMQ28_12425	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AMQ28_12435	COG3384	dioxygenase
AMQ28_12455	COG2234	aminopeptidase activity
AMQ28_12465	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMQ28_12475	COG2217	Heavy metal translocating P-type atpase
AMQ28_12485	COG0281	malic enzyme
AMQ28_12520	COG0006	proline dipeptidase activity
AMQ28_12525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMQ28_12530	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMQ28_12570	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMQ28_12575	COG1388	LysM domain
AMQ28_12575	COG0741	lytic transglycosylase activity
AMQ28_12585	COG4174	ABC transporter (Permease)
AMQ28_12590	COG4239	(ABC) transporter, permease
AMQ28_12595	COG4172	Belongs to the ABC transporter superfamily
AMQ28_12620	COG0833	amino acid
AMQ28_12635	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMQ28_12640	COG0418	dihydroorotase activity
AMQ28_12645	COG2203	Gaf domain
AMQ28_12645	COG3706	GGDEF domain
AMQ28_12645	COG4251	negative regulation of phosphorylation
AMQ28_12645	COG5001	Diguanylate cyclase
AMQ28_12655	COG1620	l-lactate permease
AMQ28_12660	COG2186	Transcriptional regulator
AMQ28_12670	COG0277	FAD linked oxidase domain protein
AMQ28_12675	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMQ28_12675	COG1902	pentaerythritol trinitrate reductase activity
AMQ28_12690	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AMQ28_12695	COG4638	Rieske (2fe-2S)
AMQ28_12700	COG1741	Belongs to the pirin family
AMQ28_12710	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMQ28_12715	COG3739	integral membrane protein
AMQ28_12735	COG0302	gtp cyclohydrolase
AMQ28_12740	COG2840	Smr protein MutS2
AMQ28_12750	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMQ28_12755	COG0512	Glutamine amidotransferase of anthranilate synthase
AMQ28_12770	COG1012	belongs to the aldehyde dehydrogenase family
AMQ28_12780	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMQ28_12795	COG4774	siderophore transport
AMQ28_12820	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMQ28_12825	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AMQ28_12830	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMQ28_12855	COG0024	Methionine aminopeptidase
AMQ28_12860	COG0052	Belongs to the universal ribosomal protein uS2 family
AMQ28_12885	COG2951	lytic endotransglycosylase activity
AMQ28_12900	COG0842	Transport permease protein
AMQ28_12905	COG1131	(ABC) transporter
AMQ28_12955	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMQ28_12965	COG1252	NADH dehydrogenase
AMQ28_12970	COG1686	Belongs to the peptidase S11 family
AMQ28_12985	COG1187	pseudouridine synthase activity
AMQ28_13095	COG3617	BRO family, N-terminal domain
AMQ28_13145	COG5410	chromosome segregation
AMQ28_13150	COG4383	Mu-like prophage protein gp29
AMQ28_13310	COG0582	viral genome integration into host DNA
AMQ28_13330	COG0436	Aminotransferase
AMQ28_13335	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMQ28_13340	COG0386	Belongs to the glutathione peroxidase family
AMQ28_13365	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMQ28_13375	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMQ28_13385	COG0012	GTP binding
AMQ28_13395	COG1522	sequence-specific DNA binding
AMQ28_13405	COG0204	Acyl-transferase
AMQ28_13450	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMQ28_13450	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMQ28_13485	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMQ28_13505	COG2353	YceI-like domain
AMQ28_13510	COG1280	lysine exporter protein (LysE YggA)
AMQ28_13515	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMQ28_13515	COG0519	Catalyzes the synthesis of GMP from XMP
AMQ28_13540	COG1116	anion transmembrane transporter activity
AMQ28_13540	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMQ28_13550	COG2223	nitrite transmembrane transporter activity
AMQ28_13555	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMQ28_13560	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMQ28_13565	COG0243	molybdopterin cofactor binding
AMQ28_13575	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMQ28_13585	COG0314	molybdopterin synthase activity
AMQ28_13600	COG0625	glutathione transferase activity
AMQ28_13630	COG0517	IMP dehydrogenase activity
AMQ28_13630	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AMQ28_13635	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMQ28_13645	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMQ28_13650	COG1137	ATPase activity
AMQ28_13695	COG0589	response to stress
AMQ28_13710	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMQ28_13730	COG1045	serine acetyltransferase
AMQ28_13745	COG2011	ABC-type metal ion transport system permease component
AMQ28_13750	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AMQ28_13760	COG0151	Belongs to the GarS family
AMQ28_13765	COG0138	bifunctional purine biosynthesis protein purh
AMQ28_13770	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMQ28_13805	COG2204	response regulator
AMQ28_13810	COG3852	Histidine kinase
AMQ28_13825	COG0233	cytoplasmic translational termination
AMQ28_13830	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMQ28_13835	COG0575	Belongs to the CDS family
AMQ28_13850	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMQ28_13860	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMQ28_13870	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMQ28_13880	COG2137	regulation of response to DNA damage stimulus
AMQ28_13885	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMQ28_13890	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AMQ28_13895	COG1011	Hydrolase
AMQ28_13900	COG1218	3'(2'),5'-bisphosphate nucleotidase
AMQ28_13915	COG0702	epimerase
AMQ28_13920	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMQ28_13930	COG2850	peptidyl-arginine hydroxylation
AMQ28_13935	COG0424	maF-like protein
AMQ28_13945	COG0126	phosphoglycerate kinase activity
AMQ28_13960	COG0697	spore germination
AMQ28_13980	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMQ28_14040	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMQ28_14070	COG0316	Belongs to the HesB IscA family
AMQ28_14075	COG0822	iron-sulfur transferase activity
AMQ28_14100	COG0776	regulation of translation
AMQ28_14105	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMQ28_14135	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMQ28_14155	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMQ28_14160	COG0569	domain protein
AMQ28_14170	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMQ28_14175	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMQ28_14195	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMQ28_14200	COG0542	response to heat
AMQ28_14225	COG0372	Belongs to the citrate synthase family
AMQ28_14250	COG0148	phosphopyruvate hydratase activity
AMQ28_14265	COG0772	Belongs to the SEDS family