AMQ28_00235	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMQ28_00245	PWY-7560	methylerythritol phosphate pathway II
AMQ28_00255	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMQ28_00255	PWY-6164	3-dehydroquinate biosynthesis I
AMQ28_00255	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMQ28_00310	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMQ28_00310	PWY-7962	AMQ28_00310
AMQ28_00310	PWY-7971	AMQ28_00310
AMQ28_00310	PWY-7972	AMQ28_00310
AMQ28_00315	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMQ28_00315	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMQ28_00315	PWY-7964	AMQ28_00315
AMQ28_00315	PWY-7965	AMQ28_00315
AMQ28_00315	PWY-7966	AMQ28_00315
AMQ28_00315	PWY-7967	AMQ28_00315
AMQ28_00315	PWY-7968	AMQ28_00315
AMQ28_00315	PWY-7969	AMQ28_00315
AMQ28_00315	PWY-7970	AMQ28_00315
AMQ28_00325	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMQ28_00325	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMQ28_00325	PWY-7961	AMQ28_00325
AMQ28_00325	PWY-7963	AMQ28_00325
AMQ28_00325	PWY-7964	AMQ28_00325
AMQ28_00325	PWY-7965	AMQ28_00325
AMQ28_00325	PWY-7966	AMQ28_00325
AMQ28_00325	PWY-7967	AMQ28_00325
AMQ28_00325	PWY-7968	AMQ28_00325
AMQ28_00325	PWY-7969	AMQ28_00325
AMQ28_00325	PWY-7970	AMQ28_00325
AMQ28_00325	PWY-7975	AMQ28_00325
AMQ28_00370	PWY-5392	reductive TCA cycle II
AMQ28_00370	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_00370	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_00370	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_00370	PWY-6728	methylaspartate cycle
AMQ28_00370	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_00370	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_00370	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMQ28_00445	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMQ28_00445	PWY-3162	L-tryptophan degradation V (side chain pathway)
AMQ28_00445	PWY-5057	L-valine degradation II
AMQ28_00445	PWY-5076	L-leucine degradation III
AMQ28_00445	PWY-5078	L-isoleucine degradation II
AMQ28_00445	PWY-5079	L-phenylalanine degradation III
AMQ28_00445	PWY-5082	L-methionine degradation III
AMQ28_00445	PWY-5480	pyruvate fermentation to ethanol I
AMQ28_00445	PWY-5486	pyruvate fermentation to ethanol II
AMQ28_00445	PWY-5751	phenylethanol biosynthesis
AMQ28_00445	PWY-6313	serotonin degradation
AMQ28_00445	PWY-6333	acetaldehyde biosynthesis I
AMQ28_00445	PWY-6342	noradrenaline and adrenaline degradation
AMQ28_00445	PWY-6587	pyruvate fermentation to ethanol III
AMQ28_00445	PWY-6802	salidroside biosynthesis
AMQ28_00445	PWY-6871	3-methylbutanol biosynthesis
AMQ28_00445	PWY-7013	L-1,2-propanediol degradation
AMQ28_00445	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_00445	PWY-7118	chitin degradation to ethanol
AMQ28_00445	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMQ28_00445	PWY-7798	AMQ28_00445
AMQ28_00450	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_00450	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AMQ28_00450	PWY-6638	sulfolactate degradation III
AMQ28_00450	PWY-6642	(<i>R</i>)-cysteate degradation
AMQ28_00450	PWY-6643	coenzyme M biosynthesis II
AMQ28_00450	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMQ28_00450	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMQ28_00450	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMQ28_00465	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMQ28_00465	PWY-6164	3-dehydroquinate biosynthesis I
AMQ28_00465	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMQ28_00555	PWY-5667	CDP-diacylglycerol biosynthesis I
AMQ28_00555	PWY-6453	stigma estolide biosynthesis
AMQ28_00555	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AMQ28_00555	PWY-7587	oleate biosynthesis III (cyanobacteria)
AMQ28_00560	PWY-6936	seleno-amino acid biosynthesis
AMQ28_00575	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AMQ28_00580	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMQ28_00580	PWY-2361	3-oxoadipate degradation
AMQ28_00580	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AMQ28_00625	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AMQ28_00695	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_00695	PWY-5743	3-hydroxypropanoate cycle
AMQ28_00695	PWY-5744	glyoxylate assimilation
AMQ28_00695	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_00695	PWY-6722	candicidin biosynthesis
AMQ28_00765	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_00765	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AMQ28_00765	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMQ28_00875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMQ28_00875	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AMQ28_00875	PWY-6936	seleno-amino acid biosynthesis
AMQ28_00875	PWY-702	L-methionine biosynthesis II
AMQ28_00910	PWY-5691	urate degradation to allantoin I
AMQ28_00910	PWY-7394	urate degradation to allantoin II
AMQ28_00910	PWY-7849	AMQ28_00910
AMQ28_00970	PWY-6107	chlorosalicylate degradation
AMQ28_00970	PWY-6183	salicylate degradation I
AMQ28_00970	PWY-6184	methylsalicylate degradation
AMQ28_01065	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMQ28_01065	PWY-6416	quinate degradation II
AMQ28_01065	PWY-6707	gallate biosynthesis
AMQ28_01085	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMQ28_01130	PWY-7799	AMQ28_01130
AMQ28_01130	PWY-7800	AMQ28_01130
AMQ28_01200	PWY-5747	2-methylcitrate cycle II
AMQ28_01275	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMQ28_01275	PWY-6148	tetrahydromethanopterin biosynthesis
AMQ28_01275	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMQ28_01275	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMQ28_01275	PWY-7852	AMQ28_01275
AMQ28_01275	PWY-7853	AMQ28_01275
AMQ28_01280	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMQ28_01280	PWY-6148	tetrahydromethanopterin biosynthesis
AMQ28_01280	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMQ28_01280	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMQ28_01370	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_01370	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_01385	PWY-3781	aerobic respiration I (cytochrome c)
AMQ28_01385	PWY-4521	arsenite oxidation I (respiratory)
AMQ28_01385	PWY-6692	Fe(II) oxidation
AMQ28_01385	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMQ28_01385	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AMQ28_01425	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMQ28_01470	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_01470	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_01470	PWY-7953	AMQ28_01470
AMQ28_01530	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMQ28_01530	PWY-5723	Rubisco shunt
AMQ28_01590	PWY-6897	thiamin salvage II
AMQ28_01590	PWY-7356	thiamin salvage IV (yeast)
AMQ28_01590	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMQ28_01615	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_01615	PWY-7118	chitin degradation to ethanol
AMQ28_01615	PWY-7294	xylose degradation IV
AMQ28_01615	PWY-7295	L-arabinose degradation IV
AMQ28_01615	PWY-7854	AMQ28_01615
AMQ28_01630	PWY-5686	UMP biosynthesis
AMQ28_01630	PWY-7790	AMQ28_01630
AMQ28_01630	PWY-7791	AMQ28_01630
AMQ28_01650	PWY-7205	CMP phosphorylation
AMQ28_01720	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMQ28_01785	PWY-2781	<i>cis</i>-zeatin biosynthesis
AMQ28_01845	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_01910	PWY-723	alkylnitronates degradation
AMQ28_02075	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_02080	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMQ28_02080	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMQ28_02080	PWY-6897	thiamin salvage II
AMQ28_02080	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMQ28_02080	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMQ28_02080	PWY-7356	thiamin salvage IV (yeast)
AMQ28_02080	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMQ28_02120	PWY-5386	methylglyoxal degradation I
AMQ28_02185	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMQ28_02210	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMQ28_02210	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMQ28_02210	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMQ28_02210	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMQ28_02220	PWY-5686	UMP biosynthesis
AMQ28_02240	PWY-5667	CDP-diacylglycerol biosynthesis I
AMQ28_02240	PWY-5981	CDP-diacylglycerol biosynthesis III
AMQ28_02240	PWY-7902	AMQ28_02240
AMQ28_02280	PWY-6891	thiazole biosynthesis II (Bacillus)
AMQ28_02280	PWY-6892	thiazole biosynthesis I (E. coli)
AMQ28_02330	PWY-5686	UMP biosynthesis
AMQ28_02330	PWY-7790	AMQ28_02330
AMQ28_02330	PWY-7791	AMQ28_02330
AMQ28_02385	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_02410	PWY-2941	L-lysine biosynthesis II
AMQ28_02410	PWY-2942	L-lysine biosynthesis III
AMQ28_02410	PWY-5097	L-lysine biosynthesis VI
AMQ28_02410	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMQ28_02410	PWY-6559	spermidine biosynthesis II
AMQ28_02410	PWY-6562	norspermidine biosynthesis
AMQ28_02410	PWY-7153	grixazone biosynthesis
AMQ28_02410	PWY-7977	AMQ28_02410
AMQ28_02440	PWY-6610	adenine and adenosine salvage IV
AMQ28_02475	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMQ28_02475	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AMQ28_02480	PWY-3461	L-tyrosine biosynthesis II
AMQ28_02480	PWY-3462	L-phenylalanine biosynthesis II
AMQ28_02480	PWY-6120	L-tyrosine biosynthesis III
AMQ28_02480	PWY-6627	salinosporamide A biosynthesis
AMQ28_02480	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AMQ28_02480	PWY-7626	bacilysin biosynthesis
AMQ28_02510	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMQ28_02510	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMQ28_02510	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMQ28_02515	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_02515	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_02515	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_02515	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_02525	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMQ28_02525	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMQ28_02525	PWY-6897	thiamin salvage II
AMQ28_02525	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMQ28_02525	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMQ28_02525	PWY-7356	thiamin salvage IV (yeast)
AMQ28_02525	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMQ28_02615	PWY-5392	reductive TCA cycle II
AMQ28_02615	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_02615	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_02615	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_02615	PWY-6728	methylaspartate cycle
AMQ28_02615	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_02615	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_02615	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMQ28_02680	PWY-5386	methylglyoxal degradation I
AMQ28_02715	PWY-5381	pyridine nucleotide cycling (plants)
AMQ28_02715	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMQ28_02715	PWY-6596	adenosine nucleotides degradation I
AMQ28_02715	PWY-6606	guanosine nucleotides degradation II
AMQ28_02715	PWY-6607	guanosine nucleotides degradation I
AMQ28_02715	PWY-6608	guanosine nucleotides degradation III
AMQ28_02715	PWY-7185	UTP and CTP dephosphorylation I
AMQ28_02715	PWY-7821	AMQ28_02715
AMQ28_02730	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_02730	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_02745	PWY-7887	AMQ28_02745
AMQ28_02745	PWY-7892	AMQ28_02745
AMQ28_02755	PWY-6123	inosine-5'-phosphate biosynthesis I
AMQ28_02755	PWY-6124	inosine-5'-phosphate biosynthesis II
AMQ28_02755	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_02755	PWY-7234	inosine-5'-phosphate biosynthesis III
AMQ28_02805	PWY-6409	pyoverdine I biosynthesis
AMQ28_02805	PWY-6562	norspermidine biosynthesis
AMQ28_02805	PWY-761	rhizobactin 1021 biosynthesis
AMQ28_02805	PWY-7855	AMQ28_02805
AMQ28_02805	PWY-7988	AMQ28_02805
AMQ28_02820	PWY-3341	L-proline biosynthesis III
AMQ28_02820	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMQ28_02850	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_02850	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_02850	PWY-6901	superpathway of glucose and xylose degradation
AMQ28_02850	PWY-7003	glycerol degradation to butanol
AMQ28_02905	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMQ28_02905	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMQ28_02965	PWY-5316	nicotine biosynthesis
AMQ28_02965	PWY-7342	superpathway of nicotine biosynthesis
AMQ28_02975	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMQ28_02975	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_02975	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_02975	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMQ28_02975	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMQ28_02975	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMQ28_02985	PWY-6543	4-aminobenzoate biosynthesis
AMQ28_03030	PWY-6703	preQ<sub>0</sub> biosynthesis
AMQ28_03035	PWY-6703	preQ<sub>0</sub> biosynthesis
AMQ28_03045	PWY-6482	diphthamide biosynthesis (archaea)
AMQ28_03045	PWY-7546	diphthamide biosynthesis (eukaryotes)
AMQ28_03080	PWY-7094	fatty acid salvage
AMQ28_03080	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMQ28_03085	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMQ28_03085	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMQ28_03085	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMQ28_03155	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_03200	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMQ28_03200	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMQ28_03200	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMQ28_03205	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMQ28_03205	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMQ28_03340	PWY-2941	L-lysine biosynthesis II
AMQ28_03340	PWY-5097	L-lysine biosynthesis VI
AMQ28_03345	PWY-2941	L-lysine biosynthesis II
AMQ28_03345	PWY-2942	L-lysine biosynthesis III
AMQ28_03345	PWY-5097	L-lysine biosynthesis VI
AMQ28_03405	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMQ28_03410	PWY-2201	folate transformations I
AMQ28_03410	PWY-3841	folate transformations II
AMQ28_03425	PWY-1281	sulfoacetaldehyde degradation I
AMQ28_03425	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMQ28_03425	PWY-5482	pyruvate fermentation to acetate II
AMQ28_03425	PWY-5485	pyruvate fermentation to acetate IV
AMQ28_03425	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_03425	PWY-6637	sulfolactate degradation II
AMQ28_03425	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMQ28_03485	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_03490	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_03500	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_03500	PWY-7887	AMQ28_03500
AMQ28_03510	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_03665	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_03710	PWY-6614	tetrahydrofolate biosynthesis
AMQ28_03740	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_03740	PWY-5686	UMP biosynthesis
AMQ28_03740	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_03740	PWY-7790	AMQ28_03740
AMQ28_03740	PWY-7791	AMQ28_03740
AMQ28_03745	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_03745	PWY-5686	UMP biosynthesis
AMQ28_03745	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_03745	PWY-7790	AMQ28_03745
AMQ28_03745	PWY-7791	AMQ28_03745
AMQ28_03850	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_03850	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_03850	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_03850	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_03875	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMQ28_03875	PWY-5743	3-hydroxypropanoate cycle
AMQ28_03875	PWY-5744	glyoxylate assimilation
AMQ28_03875	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_03875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_03875	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMQ28_03875	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMQ28_03915	PWY-2201	folate transformations I
AMQ28_03915	PWY-3841	folate transformations II
AMQ28_03915	PWY-7977	AMQ28_03915
AMQ28_04405	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_04405	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMQ28_04500	PWY-7183	pyrimidine nucleobases salvage I
AMQ28_04590	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMQ28_04590	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_04590	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMQ28_04590	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMQ28_04590	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_04590	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_04590	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_04590	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMQ28_04595	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMQ28_04595	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_04595	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMQ28_04595	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMQ28_04595	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_04595	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_04595	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_04595	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMQ28_04625	PWY-5101	L-isoleucine biosynthesis II
AMQ28_04625	PWY-5103	L-isoleucine biosynthesis III
AMQ28_04625	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_04625	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_04660	PWY-5101	L-isoleucine biosynthesis II
AMQ28_04660	PWY-5103	L-isoleucine biosynthesis III
AMQ28_04660	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_04660	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_04705	PWY-6683	sulfate reduction III (assimilatory)
AMQ28_04735	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMQ28_04735	PWY-5109	2-methylbutanoate biosynthesis
AMQ28_04735	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMQ28_04735	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMQ28_04735	PWY-5177	glutaryl-CoA degradation
AMQ28_04735	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_04735	PWY-6435	4-hydroxybenzoate biosynthesis V
AMQ28_04735	PWY-6583	pyruvate fermentation to butanol I
AMQ28_04735	PWY-6863	pyruvate fermentation to hexanol
AMQ28_04735	PWY-6883	pyruvate fermentation to butanol II
AMQ28_04735	PWY-6944	androstenedione degradation
AMQ28_04735	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMQ28_04735	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMQ28_04735	PWY-7007	methyl ketone biosynthesis
AMQ28_04735	PWY-7046	4-coumarate degradation (anaerobic)
AMQ28_04735	PWY-7094	fatty acid salvage
AMQ28_04735	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMQ28_04735	PWY-735	jasmonic acid biosynthesis
AMQ28_04735	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMQ28_04735	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMQ28_04735	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMQ28_04735	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMQ28_04735	PWY-7726	AMQ28_04735
AMQ28_04735	PWY-7778	AMQ28_04735
AMQ28_04735	PWY-7779	AMQ28_04735
AMQ28_04790	PWY-5367	petroselinate biosynthesis
AMQ28_04790	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMQ28_04790	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMQ28_04790	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMQ28_04790	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMQ28_04790	PWY-6113	superpathway of mycolate biosynthesis
AMQ28_04790	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMQ28_04790	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMQ28_04790	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMQ28_04790	PWY-7663	gondoate biosynthesis (anaerobic)
AMQ28_04790	PWY-7664	oleate biosynthesis IV (anaerobic)
AMQ28_04790	PWY-7858	AMQ28_04790
AMQ28_04790	PWYG-321	mycolate biosynthesis
AMQ28_04795	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_04795	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AMQ28_04795	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMQ28_04840	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AMQ28_04845	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMQ28_04965	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMQ28_04965	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMQ28_04970	PWY-3961	phosphopantothenate biosynthesis II
AMQ28_05045	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMQ28_05045	PWY-5723	Rubisco shunt
AMQ28_05055	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMQ28_05070	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AMQ28_05125	PWY-5958	acridone alkaloid biosynthesis
AMQ28_05125	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMQ28_05125	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMQ28_05145	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_05145	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_05145	PWY-7953	AMQ28_05145
AMQ28_05245	PWY-3341	L-proline biosynthesis III
AMQ28_05245	PWY-4981	L-proline biosynthesis II (from arginine)
AMQ28_05245	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMQ28_05255	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_05255	PWY-5743	3-hydroxypropanoate cycle
AMQ28_05255	PWY-5744	glyoxylate assimilation
AMQ28_05255	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_05255	PWY-6722	candicidin biosynthesis
AMQ28_05270	PWY-7980	AMQ28_05270
AMQ28_05335	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMQ28_05335	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMQ28_05335	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMQ28_05335	PWY-6113	superpathway of mycolate biosynthesis
AMQ28_05335	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMQ28_05335	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMQ28_05335	PWY-7663	gondoate biosynthesis (anaerobic)
AMQ28_05335	PWY-7664	oleate biosynthesis IV (anaerobic)
AMQ28_05335	PWY-7858	AMQ28_05335
AMQ28_05335	PWYG-321	mycolate biosynthesis
AMQ28_05460	PWY-6902	chitin degradation II
AMQ28_05460	PWY-7822	AMQ28_05460
AMQ28_05460	PWY-7883	AMQ28_05460
AMQ28_05475	PWY-3341	L-proline biosynthesis III
AMQ28_05475	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMQ28_05485	PWY-5482	pyruvate fermentation to acetate II
AMQ28_05485	PWY-5485	pyruvate fermentation to acetate IV
AMQ28_05485	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_05490	PWY-1281	sulfoacetaldehyde degradation I
AMQ28_05490	PWY-5482	pyruvate fermentation to acetate II
AMQ28_05490	PWY-5485	pyruvate fermentation to acetate IV
AMQ28_05490	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_05490	PWY-6637	sulfolactate degradation II
AMQ28_05500	PWY-5392	reductive TCA cycle II
AMQ28_05500	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_05500	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_05500	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_05500	PWY-6728	methylaspartate cycle
AMQ28_05500	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_05500	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_05500	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMQ28_05565	PWY-6871	3-methylbutanol biosynthesis
AMQ28_05575	PWY-5344	L-homocysteine biosynthesis
AMQ28_05710	PWY-6654	phosphopantothenate biosynthesis III
AMQ28_05715	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMQ28_05715	PWY-6148	tetrahydromethanopterin biosynthesis
AMQ28_05715	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMQ28_05715	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMQ28_05715	PWY-7852	AMQ28_05715
AMQ28_05715	PWY-7853	AMQ28_05715
AMQ28_05735	PWY-6012	acyl carrier protein metabolism I
AMQ28_05735	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMQ28_05735	PWY-6289	petrobactin biosynthesis
AMQ28_05780	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMQ28_05780	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMQ28_05780	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_05780	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_05780	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMQ28_05780	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMQ28_05780	PWY-7205	CMP phosphorylation
AMQ28_05780	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMQ28_05780	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_05780	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_05780	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_05780	PWY-7224	purine deoxyribonucleosides salvage
AMQ28_05780	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_05780	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMQ28_05825	PWY-5103	L-isoleucine biosynthesis III
AMQ28_05825	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_05830	PWY-5101	L-isoleucine biosynthesis II
AMQ28_05830	PWY-5103	L-isoleucine biosynthesis III
AMQ28_05830	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_05830	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMQ28_05830	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMQ28_05830	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMQ28_05830	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_05835	PWY-5101	L-isoleucine biosynthesis II
AMQ28_05835	PWY-5103	L-isoleucine biosynthesis III
AMQ28_05835	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_05835	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMQ28_05835	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMQ28_05835	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMQ28_05835	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_05880	PWY-3841	folate transformations II
AMQ28_05880	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMQ28_05880	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMQ28_05880	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMQ28_05880	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMQ28_05880	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMQ28_05885	PWY-3841	folate transformations II
AMQ28_05885	PWY-6614	tetrahydrofolate biosynthesis
AMQ28_05920	PWY-2201	folate transformations I
AMQ28_05920	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_05920	PWY-7909	AMQ28_05920
AMQ28_06030	PWY-2941	L-lysine biosynthesis II
AMQ28_06030	PWY-2942	L-lysine biosynthesis III
AMQ28_06030	PWY-5097	L-lysine biosynthesis VI
AMQ28_06030	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_06030	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMQ28_06030	PWY-6559	spermidine biosynthesis II
AMQ28_06030	PWY-6562	norspermidine biosynthesis
AMQ28_06030	PWY-7153	grixazone biosynthesis
AMQ28_06030	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_06030	PWY-7977	AMQ28_06030
AMQ28_06075	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMQ28_06340	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMQ28_06375	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_06375	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_06510	PWY-5839	menaquinol-7 biosynthesis
AMQ28_06510	PWY-5844	menaquinol-9 biosynthesis
AMQ28_06510	PWY-5849	menaquinol-6 biosynthesis
AMQ28_06510	PWY-5890	menaquinol-10 biosynthesis
AMQ28_06510	PWY-5891	menaquinol-11 biosynthesis
AMQ28_06510	PWY-5892	menaquinol-12 biosynthesis
AMQ28_06510	PWY-5895	menaquinol-13 biosynthesis
AMQ28_06615	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_06615	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_06615	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_06615	PWY-7003	glycerol degradation to butanol
AMQ28_06635	PWY-7851	AMQ28_06635
AMQ28_06650	PWY-5532	adenosine nucleotides degradation IV
AMQ28_06650	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMQ28_06715	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AMQ28_06740	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_06740	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_06740	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_06740	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_06745	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_06745	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_06810	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_06810	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMQ28_06810	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_06810	PWY-5723	Rubisco shunt
AMQ28_06810	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_06810	PWY-6886	1-butanol autotrophic biosynthesis
AMQ28_06810	PWY-6901	superpathway of glucose and xylose degradation
AMQ28_06810	PWY-7003	glycerol degradation to butanol
AMQ28_06810	PWY-7124	ethylene biosynthesis V (engineered)
AMQ28_06810	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMQ28_06850	PWY-6167	flavin biosynthesis II (archaea)
AMQ28_06850	PWY-6168	flavin biosynthesis III (fungi)
AMQ28_06850	PWY-7980	AMQ28_06850
AMQ28_06860	PWY-7991	AMQ28_06860
AMQ28_06905	PWY-7805	AMQ28_06905
AMQ28_06905	PWY-7807	AMQ28_06905
AMQ28_07110	PWY-7980	AMQ28_07110
AMQ28_07120	PWY-7980	AMQ28_07120
AMQ28_07240	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_07485	PWY-5704	urea degradation II
AMQ28_07490	PWY-5704	urea degradation II
AMQ28_07495	PWY-5704	urea degradation II
AMQ28_07585	PWY-4081	glutathione redox reactions I
AMQ28_07640	PWY-6167	flavin biosynthesis II (archaea)
AMQ28_07640	PWY-6168	flavin biosynthesis III (fungi)
AMQ28_07640	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMQ28_07640	PWY-7991	AMQ28_07640
AMQ28_07645	PWY-6167	flavin biosynthesis II (archaea)
AMQ28_07645	PWY-6168	flavin biosynthesis III (fungi)
AMQ28_07655	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMQ28_07655	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMQ28_07655	PWY-6896	thiamin salvage I
AMQ28_07655	PWY-6897	thiamin salvage II
AMQ28_07660	PWY-5269	cardiolipin biosynthesis II
AMQ28_07660	PWY-5668	cardiolipin biosynthesis I
AMQ28_07660	PWY-7817	AMQ28_07660
AMQ28_07665	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMQ28_07670	PWY-6749	CMP-legionaminate biosynthesis I
AMQ28_07675	PWY-6749	CMP-legionaminate biosynthesis I
AMQ28_07680	PWY-3821	galactose degradation III
AMQ28_07680	PWY-6317	galactose degradation I (Leloir pathway)
AMQ28_07680	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMQ28_07680	PWY-6527	stachyose degradation
AMQ28_07680	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMQ28_07680	PWY-7344	UDP-D-galactose biosynthesis
AMQ28_07685	PWY-3801	sucrose degradation II (sucrose synthase)
AMQ28_07685	PWY-5054	sorbitol biosynthesis I
AMQ28_07685	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AMQ28_07685	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMQ28_07685	PWY-5659	GDP-mannose biosynthesis
AMQ28_07685	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_07685	PWY-621	sucrose degradation III (sucrose invertase)
AMQ28_07685	PWY-622	starch biosynthesis
AMQ28_07685	PWY-6981	chitin biosynthesis
AMQ28_07685	PWY-6992	1,5-anhydrofructose degradation
AMQ28_07685	PWY-7238	sucrose biosynthesis II
AMQ28_07685	PWY-7347	sucrose biosynthesis III
AMQ28_07685	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMQ28_07690	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AMQ28_07690	PWY-7820	AMQ28_07690
AMQ28_07695	PWY-3801	sucrose degradation II (sucrose synthase)
AMQ28_07695	PWY-6527	stachyose degradation
AMQ28_07695	PWY-7238	sucrose biosynthesis II
AMQ28_07695	PWY-7343	UDP-glucose biosynthesis
AMQ28_07695	PWY-7817	AMQ28_07695
AMQ28_07715	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMQ28_07715	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMQ28_07715	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMQ28_07840	PWY-2941	L-lysine biosynthesis II
AMQ28_07840	PWY-2942	L-lysine biosynthesis III
AMQ28_07840	PWY-5097	L-lysine biosynthesis VI
AMQ28_07875	PWY-1622	formaldehyde assimilation I (serine pathway)
AMQ28_07875	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMQ28_07875	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_07875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_07875	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AMQ28_07875	PWY-6549	L-glutamine biosynthesis III
AMQ28_07875	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMQ28_07875	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMQ28_07875	PWY-7124	ethylene biosynthesis V (engineered)
AMQ28_07895	PWY-3461	L-tyrosine biosynthesis II
AMQ28_07895	PWY-3462	L-phenylalanine biosynthesis II
AMQ28_07895	PWY-6120	L-tyrosine biosynthesis III
AMQ28_07895	PWY-6627	salinosporamide A biosynthesis
AMQ28_07895	PWY-7626	bacilysin biosynthesis
AMQ28_07905	PWY-5101	L-isoleucine biosynthesis II
AMQ28_07905	PWY-5103	L-isoleucine biosynthesis III
AMQ28_07905	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_07905	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_07910	PWY-5101	L-isoleucine biosynthesis II
AMQ28_07910	PWY-5103	L-isoleucine biosynthesis III
AMQ28_07910	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_07910	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMQ28_07975	PWY-5451	acetone degradation I (to methylglyoxal)
AMQ28_07975	PWY-6588	pyruvate fermentation to acetone
AMQ28_07975	PWY-6876	isopropanol biosynthesis
AMQ28_07975	PWY-7466	acetone degradation III (to propane-1,2-diol)
AMQ28_08140	PWY-6599	guanine and guanosine salvage II
AMQ28_08140	PWY-6609	adenine and adenosine salvage III
AMQ28_08140	PWY-6610	adenine and adenosine salvage IV
AMQ28_08140	PWY-6620	guanine and guanosine salvage
AMQ28_08145	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_08145	PWY-6606	guanosine nucleotides degradation II
AMQ28_08145	PWY-6608	guanosine nucleotides degradation III
AMQ28_08145	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMQ28_08165	PWY-7883	AMQ28_08165
AMQ28_08175	PWY-6123	inosine-5'-phosphate biosynthesis I
AMQ28_08175	PWY-7234	inosine-5'-phosphate biosynthesis III
AMQ28_08190	PWY-7883	AMQ28_08190
AMQ28_08240	PWY-7884	AMQ28_08240
AMQ28_08250	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMQ28_08250	PWY-6167	flavin biosynthesis II (archaea)
AMQ28_08250	PWY-6168	flavin biosynthesis III (fungi)
AMQ28_08250	PWY-7863	AMQ28_08250
AMQ28_08310	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_08335	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AMQ28_08335	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AMQ28_08335	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AMQ28_08335	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AMQ28_08335	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AMQ28_08335	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AMQ28_08335	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AMQ28_08335	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AMQ28_08335	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AMQ28_08335	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AMQ28_08365	PWY-5316	nicotine biosynthesis
AMQ28_08365	PWY-5381	pyridine nucleotide cycling (plants)
AMQ28_08365	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMQ28_08365	PWY-7342	superpathway of nicotine biosynthesis
AMQ28_08395	PWY-6123	inosine-5'-phosphate biosynthesis I
AMQ28_08395	PWY-6124	inosine-5'-phosphate biosynthesis II
AMQ28_08395	PWY-7234	inosine-5'-phosphate biosynthesis III
AMQ28_08405	PWY-2941	L-lysine biosynthesis II
AMQ28_08405	PWY-2942	L-lysine biosynthesis III
AMQ28_08405	PWY-5097	L-lysine biosynthesis VI
AMQ28_08445	PWY-5381	pyridine nucleotide cycling (plants)
AMQ28_08455	PWY-5669	phosphatidylethanolamine biosynthesis I
AMQ28_08495	PWY-6840	homoglutathione biosynthesis
AMQ28_08495	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMQ28_08580	PWY-5686	UMP biosynthesis
AMQ28_08580	PWY-7790	AMQ28_08580
AMQ28_08580	PWY-7791	AMQ28_08580
AMQ28_08610	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_08610	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_08610	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_08610	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_08615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_08615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_08615	PWY-7953	AMQ28_08615
AMQ28_08620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_08620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_08620	PWY-7953	AMQ28_08620
AMQ28_08655	PWY-6891	thiazole biosynthesis II (Bacillus)
AMQ28_08655	PWY-6892	thiazole biosynthesis I (E. coli)
AMQ28_08655	PWY-7560	methylerythritol phosphate pathway II
AMQ28_08675	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMQ28_08675	PWY-6596	adenosine nucleotides degradation I
AMQ28_08675	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_08680	PWY-6749	CMP-legionaminate biosynthesis I
AMQ28_08685	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMQ28_08685	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMQ28_08690	PWY-7805	AMQ28_08690
AMQ28_08690	PWY-7807	AMQ28_08690
AMQ28_08715	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AMQ28_08735	PWY-5108	L-isoleucine biosynthesis V
AMQ28_08735	PWY-5132	humulone biosynthesis
AMQ28_08735	PWY-5133	cohumulone biosynthesis
AMQ28_08735	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMQ28_08735	PWY-7118	chitin degradation to ethanol
AMQ28_08735	PWY-7857	AMQ28_08735
AMQ28_08750	PWY-6059	dimethyl sulfide degradation II (oxidation)
AMQ28_08820	PWY-6899	base-degraded thiamin salvage
AMQ28_08820	PWY-7356	thiamin salvage IV (yeast)
AMQ28_09160	PWY-702	L-methionine biosynthesis II
AMQ28_09265	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMQ28_09265	PWY-6435	4-hydroxybenzoate biosynthesis V
AMQ28_09265	PWY-6863	pyruvate fermentation to hexanol
AMQ28_09265	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMQ28_09265	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMQ28_09265	PWY-6948	sitosterol degradation to androstenedione
AMQ28_09265	PWY-7094	fatty acid salvage
AMQ28_09265	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
AMQ28_09265	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AMQ28_09265	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AMQ28_09265	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
AMQ28_09265	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AMQ28_09265	PWY-735	jasmonic acid biosynthesis
AMQ28_09265	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMQ28_09265	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMQ28_09265	PWY-7726	AMQ28_09265
AMQ28_09270	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMQ28_09270	PWY-5109	2-methylbutanoate biosynthesis
AMQ28_09270	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMQ28_09270	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
AMQ28_09270	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMQ28_09270	PWY-5177	glutaryl-CoA degradation
AMQ28_09270	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_09270	PWY-6435	4-hydroxybenzoate biosynthesis V
AMQ28_09270	PWY-6583	pyruvate fermentation to butanol I
AMQ28_09270	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
AMQ28_09270	PWY-6863	pyruvate fermentation to hexanol
AMQ28_09270	PWY-6883	pyruvate fermentation to butanol II
AMQ28_09270	PWY-6944	androstenedione degradation
AMQ28_09270	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMQ28_09270	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMQ28_09270	PWY-7007	methyl ketone biosynthesis
AMQ28_09270	PWY-7046	4-coumarate degradation (anaerobic)
AMQ28_09270	PWY-7094	fatty acid salvage
AMQ28_09270	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMQ28_09270	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
AMQ28_09270	PWY-7292	oleate &beta;-oxidation (thioesterase-dependent, yeast)
AMQ28_09270	PWY-7307	oleate &beta;-oxidation (reductase-dependent, yeast)
AMQ28_09270	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AMQ28_09270	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AMQ28_09270	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AMQ28_09270	PWY-735	jasmonic acid biosynthesis
AMQ28_09270	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMQ28_09270	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMQ28_09270	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMQ28_09270	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMQ28_09270	PWY-7726	AMQ28_09270
AMQ28_09270	PWY-7778	AMQ28_09270
AMQ28_09270	PWY-7779	AMQ28_09270
AMQ28_09285	PWY-5269	cardiolipin biosynthesis II
AMQ28_09285	PWY-5668	cardiolipin biosynthesis I
AMQ28_09285	PWY-7817	AMQ28_09285
AMQ28_09295	PWY-4983	L-citrulline-nitric oxide cycle
AMQ28_09295	PWY-4984	urea cycle
AMQ28_09295	PWY-5	canavanine biosynthesis
AMQ28_09295	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_09295	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_09310	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_09310	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMQ28_09315	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_09315	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMQ28_09360	PWY-181	photorespiration
AMQ28_09365	PWY-5958	acridone alkaloid biosynthesis
AMQ28_09365	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMQ28_09365	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMQ28_09660	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_09690	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_09690	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_09700	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMQ28_09700	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMQ28_09700	PWY-7953	AMQ28_09700
AMQ28_09705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_09705	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_09705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_09715	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_09715	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_09715	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_09715	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_09745	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMQ28_09750	PWY-6164	3-dehydroquinate biosynthesis I
AMQ28_09835	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_09840	PWY-7560	methylerythritol phosphate pathway II
AMQ28_09890	PWY-6829	tRNA methylation (yeast)
AMQ28_09890	PWY-7285	methylwyosine biosynthesis
AMQ28_09890	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AMQ28_09965	PWY-6854	ethylene biosynthesis III (microbes)
AMQ28_10040	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMQ28_10050	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMQ28_10055	PWY-6168	flavin biosynthesis III (fungi)
AMQ28_10055	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMQ28_10055	PWY-7991	AMQ28_10055
AMQ28_10060	PWY-6891	thiazole biosynthesis II (Bacillus)
AMQ28_10060	PWY-6892	thiazole biosynthesis I (E. coli)
AMQ28_10060	PWY-7560	methylerythritol phosphate pathway II
AMQ28_10130	PWY-5667	CDP-diacylglycerol biosynthesis I
AMQ28_10130	PWY-6453	stigma estolide biosynthesis
AMQ28_10130	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AMQ28_10130	PWY-7587	oleate biosynthesis III (cyanobacteria)
AMQ28_10415	PWY-7731	AMQ28_10415
AMQ28_10480	PWY-1622	formaldehyde assimilation I (serine pathway)
AMQ28_10480	PWY-5392	reductive TCA cycle II
AMQ28_10480	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_10480	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_10480	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_10480	PWY-6728	methylaspartate cycle
AMQ28_10480	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_10480	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMQ28_10480	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMQ28_10510	PWY-5669	phosphatidylethanolamine biosynthesis I
AMQ28_10590	PWY-7892	AMQ28_10590
AMQ28_10625	PWY-7851	AMQ28_10625
AMQ28_10830	PWY-6936	seleno-amino acid biosynthesis
AMQ28_10865	PWY-6700	queuosine biosynthesis
AMQ28_10880	PWY-6700	queuosine biosynthesis
AMQ28_10900	PWY-5057	L-valine degradation II
AMQ28_10900	PWY-5076	L-leucine degradation III
AMQ28_10900	PWY-5078	L-isoleucine degradation II
AMQ28_10900	PWY-5101	L-isoleucine biosynthesis II
AMQ28_10900	PWY-5103	L-isoleucine biosynthesis III
AMQ28_10900	PWY-5104	L-isoleucine biosynthesis IV
AMQ28_10900	PWY-5108	L-isoleucine biosynthesis V
AMQ28_10900	PWY-7767	AMQ28_10900
AMQ28_10925	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMQ28_10925	PWY-6808	dTDP-D-forosamine biosynthesis
AMQ28_10925	PWY-6942	dTDP-D-desosamine biosynthesis
AMQ28_10925	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMQ28_10925	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMQ28_10925	PWY-6974	dTDP-L-olivose biosynthesis
AMQ28_10925	PWY-6976	dTDP-L-mycarose biosynthesis
AMQ28_10925	PWY-7104	dTDP-L-megosamine biosynthesis
AMQ28_10925	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMQ28_10925	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMQ28_10925	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMQ28_10925	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMQ28_10925	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMQ28_10925	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMQ28_10925	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMQ28_10925	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMQ28_10925	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMQ28_10925	PWY-7688	AMQ28_10925
AMQ28_10925	PWY-7814	AMQ28_10925
AMQ28_10935	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMQ28_10935	PWY-6808	dTDP-D-forosamine biosynthesis
AMQ28_10935	PWY-6942	dTDP-D-desosamine biosynthesis
AMQ28_10935	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMQ28_10935	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMQ28_10935	PWY-6974	dTDP-L-olivose biosynthesis
AMQ28_10935	PWY-6976	dTDP-L-mycarose biosynthesis
AMQ28_10935	PWY-7104	dTDP-L-megosamine biosynthesis
AMQ28_10935	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMQ28_10935	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMQ28_10935	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMQ28_10935	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMQ28_10935	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMQ28_10935	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMQ28_10935	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMQ28_10935	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMQ28_10935	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMQ28_10935	PWY-7688	AMQ28_10935
AMQ28_10935	PWY-7814	AMQ28_10935
AMQ28_11045	PWY-5987	sorgoleone biosynthesis
AMQ28_11045	PWY-5996	oleate biosynthesis II (animals and fungi)
AMQ28_11100	PWY-4381	fatty acid biosynthesis initiation I
AMQ28_11100	PWY-5743	3-hydroxypropanoate cycle
AMQ28_11100	PWY-5744	glyoxylate assimilation
AMQ28_11100	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMQ28_11100	PWY-6722	candicidin biosynthesis
AMQ28_11105	PWY-2161	folate polyglutamylation
AMQ28_11140	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_11145	PWY-5316	nicotine biosynthesis
AMQ28_11145	PWY-7342	superpathway of nicotine biosynthesis
AMQ28_11455	PWY-7802	AMQ28_11455
AMQ28_11460	PWY-7801	AMQ28_11460
AMQ28_11525	PWY-6749	CMP-legionaminate biosynthesis I
AMQ28_11530	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_11530	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_11575	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMQ28_11690	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMQ28_11755	PWY-6349	CDP-archaeol biosynthesis
AMQ28_11995	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AMQ28_12000	PWY-5194	siroheme biosynthesis
AMQ28_12000	PWY-5196	factor 430 biosynthesis
AMQ28_12000	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMQ28_12025	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMQ28_12025	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMQ28_12065	PWY-5155	&beta;-alanine biosynthesis III
AMQ28_12070	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMQ28_12105	PWY-7560	methylerythritol phosphate pathway II
AMQ28_12120	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMQ28_12155	PWY-7851	AMQ28_12155
AMQ28_12185	PWY-5381	pyridine nucleotide cycling (plants)
AMQ28_12185	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMQ28_12185	PWY-7761	AMQ28_12185
AMQ28_12235	PWY-3781	aerobic respiration I (cytochrome c)
AMQ28_12235	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMQ28_12235	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_12235	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_12235	PWY-6728	methylaspartate cycle
AMQ28_12235	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_12235	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_12235	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMQ28_12240	PWY-3781	aerobic respiration I (cytochrome c)
AMQ28_12240	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMQ28_12240	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMQ28_12240	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_12240	PWY-6728	methylaspartate cycle
AMQ28_12240	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_12240	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_12240	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMQ28_12250	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMQ28_12255	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMQ28_12260	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMQ28_12260	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMQ28_12265	PWY-5392	reductive TCA cycle II
AMQ28_12265	PWY-5537	pyruvate fermentation to acetate V
AMQ28_12265	PWY-5538	pyruvate fermentation to acetate VI
AMQ28_12265	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_12265	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_12265	PWY-6728	methylaspartate cycle
AMQ28_12265	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_12265	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMQ28_12270	PWY-5392	reductive TCA cycle II
AMQ28_12270	PWY-5537	pyruvate fermentation to acetate V
AMQ28_12270	PWY-5538	pyruvate fermentation to acetate VI
AMQ28_12270	PWY-5690	TCA cycle II (plants and fungi)
AMQ28_12270	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_12270	PWY-6728	methylaspartate cycle
AMQ28_12270	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_12270	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMQ28_12275	PWY-5278	sulfite oxidation III
AMQ28_12275	PWY-5340	sulfate activation for sulfonation
AMQ28_12275	PWY-6683	sulfate reduction III (assimilatory)
AMQ28_12275	PWY-6932	selenate reduction
AMQ28_12280	PWY-5278	sulfite oxidation III
AMQ28_12280	PWY-5340	sulfate activation for sulfonation
AMQ28_12280	PWY-6683	sulfate reduction III (assimilatory)
AMQ28_12280	PWY-6932	selenate reduction
AMQ28_12305	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMQ28_12305	PWY-2201	folate transformations I
AMQ28_12305	PWY-3841	folate transformations II
AMQ28_12305	PWY-5030	L-histidine degradation III
AMQ28_12305	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_12305	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMQ28_12305	PWY-7909	AMQ28_12305
AMQ28_12320	PWY-4261	glycerol degradation I
AMQ28_12330	PWY-4261	glycerol degradation I
AMQ28_12330	PWY-6118	glycerol-3-phosphate shuttle
AMQ28_12330	PWY-6952	glycerophosphodiester degradation
AMQ28_12335	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMQ28_12390	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_12390	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMQ28_12405	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMQ28_12485	PWY-6339	syringate degradation
AMQ28_12560	PWY-5381	pyridine nucleotide cycling (plants)
AMQ28_12560	PWY-7761	AMQ28_12560
AMQ28_12640	PWY-5686	UMP biosynthesis
AMQ28_12640	PWY-7790	AMQ28_12640
AMQ28_12640	PWY-7791	AMQ28_12640
AMQ28_12650	PWY-4983	L-citrulline-nitric oxide cycle
AMQ28_12650	PWY-4984	urea cycle
AMQ28_12650	PWY-5	canavanine biosynthesis
AMQ28_12650	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_12650	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_12670	PWY-5386	methylglyoxal degradation I
AMQ28_12670	PWY-7425	2-chloroacrylate degradation I
AMQ28_12690	PWY-2421	indole-3-acetate degradation VIII (bacterial)
AMQ28_12690	PWY-5648	2-nitrobenzoate degradation II
AMQ28_12690	PWY-6079	anthranilate degradation I (aerobic)
AMQ28_12695	PWY-2421	indole-3-acetate degradation VIII (bacterial)
AMQ28_12695	PWY-5648	2-nitrobenzoate degradation II
AMQ28_12695	PWY-6079	anthranilate degradation I (aerobic)
AMQ28_12710	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMQ28_12710	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMQ28_12710	PWY-7766	AMQ28_12710
AMQ28_12735	PWY-5663	tetrahydrobiopterin biosynthesis I
AMQ28_12735	PWY-5664	tetrahydrobiopterin biosynthesis II
AMQ28_12735	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMQ28_12735	PWY-6703	preQ<sub>0</sub> biosynthesis
AMQ28_12735	PWY-6983	tetrahydrobiopterin biosynthesis III
AMQ28_12735	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMQ28_12735	PWY-7852	AMQ28_12735
AMQ28_12755	PWY-5958	acridone alkaloid biosynthesis
AMQ28_12755	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMQ28_12755	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMQ28_12765	PWY-381	nitrate reduction II (assimilatory)
AMQ28_12765	PWY-5675	nitrate reduction V (assimilatory)
AMQ28_12765	PWY-6549	L-glutamine biosynthesis III
AMQ28_12765	PWY-6963	ammonia assimilation cycle I
AMQ28_12765	PWY-6964	ammonia assimilation cycle II
AMQ28_12775	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AMQ28_12775	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AMQ28_12775	PWY-6148	tetrahydromethanopterin biosynthesis
AMQ28_12775	PWY-7742	AMQ28_12775
AMQ28_12775	PWY-7745	AMQ28_12775
AMQ28_12775	PWY-7929	AMQ28_12775
AMQ28_12775	PWY-7934	AMQ28_12775
AMQ28_12775	PWY-7935	AMQ28_12775
AMQ28_12820	PWY-6854	ethylene biosynthesis III (microbes)
AMQ28_12855	PWY-7799	AMQ28_12855
AMQ28_12855	PWY-7800	AMQ28_12855
AMQ28_12895	PWY-6700	queuosine biosynthesis
AMQ28_12950	PWY-1622	formaldehyde assimilation I (serine pathway)
AMQ28_12950	PWY-181	photorespiration
AMQ28_12950	PWY-2161	folate polyglutamylation
AMQ28_12950	PWY-2201	folate transformations I
AMQ28_12950	PWY-3661	glycine betaine degradation I
AMQ28_12950	PWY-3661-1	glycine betaine degradation II (mammalian)
AMQ28_12950	PWY-3841	folate transformations II
AMQ28_12950	PWY-5497	purine nucleobases degradation II (anaerobic)
AMQ28_12980	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_12980	PWY-6549	L-glutamine biosynthesis III
AMQ28_12980	PWY-6728	methylaspartate cycle
AMQ28_12980	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_12980	PWY-7124	ethylene biosynthesis V (engineered)
AMQ28_12980	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_12980	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMQ28_13315	PWY-5913	TCA cycle VI (obligate autotrophs)
AMQ28_13315	PWY-6549	L-glutamine biosynthesis III
AMQ28_13315	PWY-6728	methylaspartate cycle
AMQ28_13315	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMQ28_13315	PWY-7124	ethylene biosynthesis V (engineered)
AMQ28_13315	PWY-7254	TCA cycle VII (acetate-producers)
AMQ28_13315	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMQ28_13440	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AMQ28_13445	PWY-6700	queuosine biosynthesis
AMQ28_13450	PWY-6938	NADH repair
AMQ28_13485	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMQ28_13485	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AMQ28_13490	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMQ28_13490	PWY-5723	Rubisco shunt
AMQ28_13490	PWY-6891	thiazole biosynthesis II (Bacillus)
AMQ28_13490	PWY-6892	thiazole biosynthesis I (E. coli)
AMQ28_13490	PWY-6901	superpathway of glucose and xylose degradation
AMQ28_13490	PWY-7560	methylerythritol phosphate pathway II
AMQ28_13555	PWY-6683	sulfate reduction III (assimilatory)
AMQ28_13575	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_13585	PWY-6823	molybdenum cofactor biosynthesis
AMQ28_13585	PWY-7887	AMQ28_13585
AMQ28_13635	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMQ28_13635	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMQ28_13705	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_13730	PWY-6936	seleno-amino acid biosynthesis
AMQ28_13730	PWY-7274	D-cycloserine biosynthesis
AMQ28_13730	PWY-7870	AMQ28_13730
AMQ28_13760	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMQ28_13760	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMQ28_13760	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMQ28_13765	PWY-6123	inosine-5'-phosphate biosynthesis I
AMQ28_13765	PWY-6124	inosine-5'-phosphate biosynthesis II
AMQ28_13765	PWY-7234	inosine-5'-phosphate biosynthesis III
AMQ28_13835	PWY-5667	CDP-diacylglycerol biosynthesis I
AMQ28_13835	PWY-5981	CDP-diacylglycerol biosynthesis III
AMQ28_13835	PWY-7817	AMQ28_13835
AMQ28_13840	PWY-7560	methylerythritol phosphate pathway II
AMQ28_13865	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMQ28_13865	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMQ28_13865	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMQ28_13865	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMQ28_13865	PWY-6113	superpathway of mycolate biosynthesis
AMQ28_13865	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMQ28_13865	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMQ28_13865	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMQ28_13865	PWY-7663	gondoate biosynthesis (anaerobic)
AMQ28_13865	PWY-7664	oleate biosynthesis IV (anaerobic)
AMQ28_13865	PWY-7858	AMQ28_13865
AMQ28_13865	PWYG-321	mycolate biosynthesis
AMQ28_13945	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_13945	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_13945	PWY-6886	1-butanol autotrophic biosynthesis
AMQ28_13945	PWY-6901	superpathway of glucose and xylose degradation
AMQ28_13945	PWY-7003	glycerol degradation to butanol
AMQ28_13955	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_13955	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMQ28_13955	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_13955	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_13955	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMQ28_14080	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMQ28_14150	PWY-6803	phosphatidylcholine acyl editing
AMQ28_14150	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AMQ28_14150	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AMQ28_14150	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AMQ28_14150	PWY-7783	AMQ28_14150
AMQ28_14175	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMQ28_14175	PWY-5723	Rubisco shunt
AMQ28_14185	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMQ28_14185	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_14210	PWY-4981	L-proline biosynthesis II (from arginine)
AMQ28_14210	PWY-4984	urea cycle
AMQ28_14210	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMQ28_14220	PWY-5747	2-methylcitrate cycle II
AMQ28_14240	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMQ28_14240	PWY-7177	UTP and CTP dephosphorylation II
AMQ28_14240	PWY-7185	UTP and CTP dephosphorylation I
AMQ28_14245	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMQ28_14245	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMQ28_14250	PWY-1042	glycolysis IV (plant cytosol)
AMQ28_14250	PWY-1622	formaldehyde assimilation I (serine pathway)
AMQ28_14250	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMQ28_14250	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMQ28_14250	PWY-5723	Rubisco shunt
AMQ28_14250	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMQ28_14250	PWY-6886	1-butanol autotrophic biosynthesis
AMQ28_14250	PWY-6901	superpathway of glucose and xylose degradation
AMQ28_14250	PWY-7003	glycerol degradation to butanol
AMQ28_14250	PWY-7124	ethylene biosynthesis V (engineered)
AMQ28_14250	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMQ28_14260	PWY-7560	methylerythritol phosphate pathway II
AMQ28_14265	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMQ28_14265	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMQ28_14265	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMQ28_14265	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
