AMQ28_00045 SM01324 AMQ28_00045 AMQ28_00075 SM00493 AMQ28_00075 AMQ28_00080 SM00341 Helicase and RNase D C-terminal AMQ28_00080 SM00474 3'-5' exonuclease AMQ28_00095 SM00382 ATPases associated with a variety of cellular activities AMQ28_00105 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_00140 SM00382 ATPases associated with a variety of cellular activities AMQ28_00140 SM00962 SRP54-type protein, GTPase domain AMQ28_00140 SM00963 SRP54-type protein, helical bundle domain AMQ28_00285 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_00320 SM00855 Phosphoglycerate mutase family AMQ28_00400 SM00318 Staphylococcal nuclease homologues AMQ28_00420 SM00855 Phosphoglycerate mutase family AMQ28_00440 SM00155 Phospholipase D. Active site motifs. AMQ28_00445 SM00829 Enoylreductase AMQ28_00480 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_00490 SM00382 ATPases associated with a variety of cellular activities AMQ28_00505 SM01034 Sensors of blue-light using FAD AMQ28_00555 SM00563 Phosphate acyltransferases AMQ28_00585 SM00882 Coenzyme A transferase AMQ28_00590 SM00882 Coenzyme A transferase AMQ28_00630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMQ28_00655 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_00670 SM00882 Coenzyme A transferase AMQ28_00675 SM00882 Coenzyme A transferase AMQ28_00685 SM00878 Biotin carboxylase C-terminal domain AMQ28_00685 SM01209 AMQ28_00685 AMQ28_00755 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_00765 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMQ28_00820 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_00880 SM00903 Flavin reductase like domain AMQ28_00885 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_00895 SM00387 Histidine kinase-like ATPases AMQ28_00895 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_00900 SM00448 cheY-homologous receiver domain AMQ28_00900 SM00862 Transcriptional regulatory protein, C terminal AMQ28_00910 SM00095 Transthyretin AMQ28_00920 SM00829 Enoylreductase AMQ28_01000 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_01030 SM00849 Metallo-beta-lactamase superfamily AMQ28_01075 SM00878 Biotin carboxylase C-terminal domain AMQ28_01225 SM00357 Cold shock protein domain AMQ28_01280 SM00905 Dihydroneopterin aldolase AMQ28_01300 SM00822 AMQ28_01300 AMQ28_01305 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_01315 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_01330 SM00937 AMQ28_01330 AMQ28_01425 SM01005 Alanine racemase, C-terminal domain AMQ28_01435 SM00460 Transglutaminase/protease-like homologues AMQ28_01475 SM00226 Low molecular weight phosphatase family AMQ28_01485 SM00382 ATPases associated with a variety of cellular activities AMQ28_01505 SM00822 AMQ28_01505 AMQ28_01595 SM01091 Transporter associated domain AMQ28_01600 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_01630 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMQ28_01640 SM00411 bacterial (prokaryotic) histone like domain AMQ28_01645 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_01670 SM00986 Uracil DNA glycosylase superfamily AMQ28_01670 SM00987 UreE urease accessory protein, C-terminal domain AMQ28_01730 SM00382 ATPases associated with a variety of cellular activities AMQ28_01745 SM00470 ParB-like nuclease domain AMQ28_01790 SM00853 MutL C terminal dimerisation domain AMQ28_01790 SM01340 AMQ28_01790 AMQ28_01815 SM00363 S4 RNA-binding domain AMQ28_01825 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_01825 SM00267 diguanylate cyclase AMQ28_01835 SM00382 ATPases associated with a variety of cellular activities AMQ28_01850 SM00382 ATPases associated with a variety of cellular activities AMQ28_01850 SM00487 DEAD-like helicases superfamily AMQ28_01850 SM00490 helicase superfamily c-terminal domain AMQ28_01850 SM00847 Helicase associated domain (HA2) Add an annotation AMQ28_01950 SM00226 Low molecular weight phosphatase family AMQ28_02035 SM00487 DEAD-like helicases superfamily AMQ28_02035 SM00490 helicase superfamily c-terminal domain AMQ28_02090 SM01118 AMQ28_02090 AMQ28_02095 SM00880 AMQ28_02095 AMQ28_02095 SM01118 AMQ28_02095 AMQ28_02120 SM00849 Metallo-beta-lactamase superfamily AMQ28_02145 SM00220 Serine/Threonine protein kinases, catalytic domain AMQ28_02235 SM00855 Phosphoglycerate mutase family AMQ28_02255 SM00487 DEAD-like helicases superfamily AMQ28_02255 SM00490 helicase superfamily c-terminal domain AMQ28_02260 SM00357 Cold shock protein domain AMQ28_02340 SM00981 AMQ28_02340 AMQ28_02355 SM00382 ATPases associated with a variety of cellular activities AMQ28_02355 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_02365 SM00100 Cyclic nucleotide-monophosphate binding domain AMQ28_02365 SM00419 helix_turn_helix, cAMP Regulatory protein AMQ28_02385 SM00788 Adenylosuccinate synthetase AMQ28_02400 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_02405 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_02480 SM00830 Chorismate mutase type II AMQ28_02535 SM00387 Histidine kinase-like ATPases AMQ28_02535 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_02540 SM00448 cheY-homologous receiver domain AMQ28_02540 SM00862 Transcriptional regulatory protein, C terminal AMQ28_02550 SM00382 ATPases associated with a variety of cellular activities AMQ28_02580 SM00422 helix_turn_helix, mercury resistance AMQ28_02625 SM00460 Transglutaminase/protease-like homologues AMQ28_02650 SM00841 Elongation factor P, C-terminal AMQ28_02650 SM01185 AMQ28_02650 AMQ28_02665 SM00052 Putative diguanylate phosphodiesterase AMQ28_02710 SM00257 Lysin motif AMQ28_02730 SM00936 Penicillin-binding protein 5, C-terminal domain AMQ28_02775 SM00382 ATPases associated with a variety of cellular activities AMQ28_02815 SM00014 Acid phosphatase homologues AMQ28_02820 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMQ28_02850 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_02865 SM00487 DEAD-like helicases superfamily AMQ28_02865 SM00490 helicase superfamily c-terminal domain AMQ28_02905 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_02935 SM00358 Double-stranded RNA binding motif AMQ28_02935 SM00535 Ribonuclease III family AMQ28_02960 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_03010 SM00382 ATPases associated with a variety of cellular activities AMQ28_03055 SM00867 YceI-like domain AMQ28_03085 SM01211 AMQ28_03085 AMQ28_03095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_03100 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMQ28_03105 SM00382 ATPases associated with a variety of cellular activities AMQ28_03225 SM00849 Metallo-beta-lactamase superfamily AMQ28_03230 SM00382 ATPases associated with a variety of cellular activities AMQ28_03290 SM00434 DNA Topoisomerase IV AMQ28_03295 SM00893 Electron transfer flavoprotein domain AMQ28_03300 SM00893 Electron transfer flavoprotein domain AMQ28_03320 SM00344 helix_turn_helix ASNC type AMQ28_03360 SM00382 ATPases associated with a variety of cellular activities AMQ28_03365 SM00978 AMQ28_03365 AMQ28_03385 SM00671 Sel1-like repeats. AMQ28_03405 SM00996 S-adenosyl-L-homocysteine hydrolase AMQ28_03405 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMQ28_03420 SM00052 Putative diguanylate phosphodiesterase AMQ28_03420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMQ28_03420 SM00091 PAS domain AMQ28_03420 SM00267 diguanylate cyclase AMQ28_03425 SM00919 Malic enzyme, NAD binding domain AMQ28_03425 SM01274 AMQ28_03425 AMQ28_03470 SM00382 ATPases associated with a variety of cellular activities AMQ28_03485 SM00852 Probable molybdopterin binding domain AMQ28_03490 SM00852 Probable molybdopterin binding domain AMQ28_03510 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_03600 SM00829 Enoylreductase AMQ28_03650 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_03650 SM00924 MgtE intracellular N domain AMQ28_03675 SM01091 Transporter associated domain AMQ28_03715 SM00382 ATPases associated with a variety of cellular activities AMQ28_03725 SM01103 AMQ28_03725 AMQ28_03740 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMQ28_03745 SM00851 MGS-like domain AMQ28_03745 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMQ28_03865 SM00382 ATPases associated with a variety of cellular activities AMQ28_03875 SM00947 Carbonic anhydrase AMQ28_03915 SM01018 B12 binding domain AMQ28_03990 SM00267 diguanylate cyclase AMQ28_04000 SM01322 AMQ28_04000 AMQ28_04145 SM00073 Histidine Phosphotransfer domain AMQ28_04145 SM00260 Two component signalling adaptor domain AMQ28_04145 SM00387 Histidine kinase-like ATPases AMQ28_04145 SM00448 cheY-homologous receiver domain AMQ28_04145 SM01231 AMQ28_04145 AMQ28_04155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMQ28_04160 SM00260 Two component signalling adaptor domain AMQ28_04165 SM00448 cheY-homologous receiver domain AMQ28_04170 SM00448 cheY-homologous receiver domain AMQ28_04275 SM01040 BRO family, N-terminal domain AMQ28_04405 SM01004 Delta-aminolevulinic acid dehydratase AMQ28_04495 SM00357 Cold shock protein domain AMQ28_04540 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_04540 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMQ28_04545 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMQ28_04580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_04580 SM00387 Histidine kinase-like ATPases AMQ28_04580 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_04585 SM00448 cheY-homologous receiver domain AMQ28_04585 SM00862 Transcriptional regulatory protein, C terminal AMQ28_04665 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_04665 SM00895 AMQ28_04665 AMQ28_04675 SM00257 Lysin motif AMQ28_04710 SM00564 beta-propeller repeat AMQ28_04725 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_04750 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMQ28_04750 SM01232 AMQ28_04750 AMQ28_04765 SM00838 Elongation factor G C-terminus AMQ28_04790 SM00822 AMQ28_04790 AMQ28_04795 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMQ28_04925 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_04935 SM00532 Ligase N family AMQ28_04945 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMQ28_04955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_04980 SM00382 ATPases associated with a variety of cellular activities AMQ28_04980 SM00962 SRP54-type protein, GTPase domain AMQ28_04980 SM00963 SRP54-type protein, helical bundle domain AMQ28_05195 SM00331 Sigma factor PP2C-like phosphatases AMQ28_05215 SM00382 ATPases associated with a variety of cellular activities AMQ28_05235 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMQ28_05235 SM00474 3'-5' exonuclease AMQ28_05235 SM00475 5'-3' exonuclease AMQ28_05235 SM00482 DNA polymerase A domain AMQ28_05250 SM00977 TilS substrate C-terminal domain AMQ28_05270 SM00357 Cold shock protein domain AMQ28_05270 SM00382 ATPases associated with a variety of cellular activities AMQ28_05270 SM00959 Rho termination factor, N-terminal domain AMQ28_05280 SM00411 bacterial (prokaryotic) histone like domain AMQ28_05285 SM00873 B3/4 domain AMQ28_05285 SM00874 tRNA synthetase B5 domain AMQ28_05285 SM00896 Ferredoxin-fold anticodon binding domain AMQ28_05310 SM00479 AMQ28_05310 AMQ28_05320 SM00450 Rhodanese Homology Domain AMQ28_05390 SM00487 DEAD-like helicases superfamily AMQ28_05390 SM00490 helicase superfamily c-terminal domain AMQ28_05445 SM00052 Putative diguanylate phosphodiesterase AMQ28_05445 SM00267 diguanylate cyclase AMQ28_05455 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_05455 SM00245 tail specific protease AMQ28_05520 SM00382 ATPases associated with a variety of cellular activities AMQ28_05520 SM00994 ClpX C4-type zinc finger AMQ28_05520 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_05545 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_05555 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_05565 SM00917 LeuA allosteric (dimerisation) domain AMQ28_05580 SM00671 Sel1-like repeats. AMQ28_05680 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_05725 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMQ28_05745 SM00564 beta-propeller repeat AMQ28_05770 SM00028 Tetratricopeptide repeats AMQ28_05775 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_05780 SM00562 AMQ28_05780 AMQ28_05790 SM00014 Acid phosphatase homologues AMQ28_05865 SM00382 ATPases associated with a variety of cellular activities AMQ28_05965 SM00360 RNA recognition motif AMQ28_05990 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMQ28_05990 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMQ28_05990 SM00493 AMQ28_05990 AMQ28_06010 SM00382 ATPases associated with a variety of cellular activities AMQ28_06030 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMQ28_06045 SM00870 AMQ28_06045 AMQ28_06055 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_06060 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_06075 SM01329 AMQ28_06075 AMQ28_06115 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_06120 SM00421 helix_turn_helix, Lux Regulon AMQ28_06195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_06215 SM01060 AMQ28_06215 AMQ28_06240 SM00363 S4 RNA-binding domain AMQ28_06245 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_06280 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_06360 SM00849 Metallo-beta-lactamase superfamily AMQ28_06400 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_06400 SM01091 Transporter associated domain AMQ28_06425 SM00487 DEAD-like helicases superfamily AMQ28_06425 SM00490 helicase superfamily c-terminal domain AMQ28_06440 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_06440 SM00267 diguanylate cyclase AMQ28_06445 SM00271 DnaJ molecular chaperone homology domain AMQ28_06465 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_06465 SM00322 K homology RNA-binding domain AMQ28_06470 SM01387 AMQ28_06470 AMQ28_06580 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_06645 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMQ28_06665 SM00732 Likely ribonuclease with RNase H fold. AMQ28_06685 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_06695 SM00382 ATPases associated with a variety of cellular activities AMQ28_06760 SM00899 AMQ28_06760 AMQ28_06790 SM00421 helix_turn_helix, Lux Regulon AMQ28_06790 SM00448 cheY-homologous receiver domain AMQ28_06795 SM00387 Histidine kinase-like ATPases AMQ28_06795 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_06800 SM00382 ATPases associated with a variety of cellular activities AMQ28_06800 SM00448 cheY-homologous receiver domain AMQ28_06805 SM00245 tail specific protease AMQ28_06875 SM00938 Nitrogen regulatory protein P-II AMQ28_06885 SM00382 ATPases associated with a variety of cellular activities AMQ28_06925 SM00434 DNA Topoisomerase IV AMQ28_06945 SM01091 Transporter associated domain AMQ28_06970 SM00641 Glycosyl hydrolases family 25 AMQ28_06990 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_07070 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_07090 SM00829 Enoylreductase AMQ28_07110 SM00382 ATPases associated with a variety of cellular activities AMQ28_07160 SM00382 ATPases associated with a variety of cellular activities AMQ28_07210 SM00448 cheY-homologous receiver domain AMQ28_07210 SM00862 Transcriptional regulatory protein, C terminal AMQ28_07215 SM00387 Histidine kinase-like ATPases AMQ28_07215 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_07230 SM00267 diguanylate cyclase AMQ28_07325 SM00487 DEAD-like helicases superfamily AMQ28_07325 SM00490 helicase superfamily c-terminal domain AMQ28_07360 SM00507 HNH nucleases AMQ28_07405 SM00487 DEAD-like helicases superfamily AMQ28_07405 SM00490 helicase superfamily c-terminal domain AMQ28_07410 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_07460 SM00988 UreE urease accessory protein, N-terminal domain AMQ28_07505 SM00849 Metallo-beta-lactamase superfamily AMQ28_07520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMQ28_07540 SM00448 cheY-homologous receiver domain AMQ28_07540 SM00862 Transcriptional regulatory protein, C terminal AMQ28_07545 SM00387 Histidine kinase-like ATPases AMQ28_07545 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_07575 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_07625 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_07690 SM00984 UDP binding domain AMQ28_07765 SM00984 UDP binding domain AMQ28_07775 SM00226 Low molecular weight phosphatase family AMQ28_07805 SM00478 endonuclease III AMQ28_07825 SM00829 Enoylreductase AMQ28_07850 SM00271 DnaJ molecular chaperone homology domain AMQ28_07895 SM00830 Chorismate mutase type II AMQ28_07940 SM00248 ankyrin repeats AMQ28_08005 SM00849 Metallo-beta-lactamase superfamily AMQ28_08070 SM00382 ATPases associated with a variety of cellular activities AMQ28_08080 SM00387 Histidine kinase-like ATPases AMQ28_08080 SM00433 TopoisomeraseII AMQ28_08090 SM00480 DNA polymerase III beta subunit AMQ28_08095 SM00382 ATPases associated with a variety of cellular activities AMQ28_08095 SM00760 Bacterial dnaA protein helix-turn-helix domain AMQ28_08110 SM01234 AMQ28_08110 AMQ28_08175 SM01001 AIR carboxylase AMQ28_08250 SM00904 Riboflavin kinase AMQ28_08270 SM00382 ATPases associated with a variety of cellular activities AMQ28_08300 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_08305 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_08370 SM00644 AMQ28_08370 AMQ28_08385 SM00052 Putative diguanylate phosphodiesterase AMQ28_08385 SM00267 diguanylate cyclase AMQ28_08390 SM00382 ATPases associated with a variety of cellular activities AMQ28_08405 SM01130 AMQ28_08405 AMQ28_08450 SM00450 Rhodanese Homology Domain AMQ28_08465 SM00836 DALR anticodon binding domain AMQ28_08465 SM01016 Arginyl tRNA synthetase N terminal dom AMQ28_08515 SM00387 Histidine kinase-like ATPases AMQ28_08515 SM00433 TopoisomeraseII AMQ28_08550 SM00267 diguanylate cyclase AMQ28_08595 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_08630 SM00842 Cell division protein FtsA AMQ28_08635 SM00864 Tubulin/FtsZ family, GTPase domain AMQ28_08635 SM00865 Tubulin/FtsZ family, C-terminal domain AMQ28_08675 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_08675 SM01240 AMQ28_08675 AMQ28_08700 SM00937 AMQ28_08700 AMQ28_08705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMQ28_08760 SM00421 helix_turn_helix, Lux Regulon AMQ28_08760 SM00448 cheY-homologous receiver domain AMQ28_08770 SM00387 Histidine kinase-like ATPases AMQ28_08770 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_08770 SM00448 cheY-homologous receiver domain AMQ28_08915 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_09070 SM00870 AMQ28_09070 AMQ28_09135 SM00477 DNA/RNA non-specific endonuclease AMQ28_09135 SM00892 DNA/RNA non-specific endonuclease AMQ28_09145 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_09180 SM00474 3'-5' exonuclease AMQ28_09275 SM00465 GIY-YIG type nucleases (URI domain) AMQ28_09305 SM00448 cheY-homologous receiver domain AMQ28_09305 SM00850 LytTr DNA-binding domain AMQ28_09335 SM00528 Domain in histone-like proteins of HNS family AMQ28_09355 SM00240 Forkhead associated domain AMQ28_09400 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMQ28_09400 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMQ28_09405 SM00649 Ribosomal protein L11/L12 AMQ28_09430 SM00663 RNA polymerase I subunit A N-terminus AMQ28_09470 SM00387 Histidine kinase-like ATPases AMQ28_09515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_09515 SM00387 Histidine kinase-like ATPases AMQ28_09515 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_09520 SM00448 cheY-homologous receiver domain AMQ28_09520 SM00862 Transcriptional regulatory protein, C terminal AMQ28_09525 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_09525 SM00732 Likely ribonuclease with RNase H fold. AMQ28_09535 SM00822 AMQ28_09535 AMQ28_09545 SM00382 ATPases associated with a variety of cellular activities AMQ28_09720 SM00842 Cell division protein FtsA AMQ28_09740 SM00965 Secretin and TonB N terminus short domain AMQ28_09825 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_09825 SM00954 Region found in RelA / SpoT proteins AMQ28_09830 SM01409 AMQ28_09830 AMQ28_09835 SM00072 Guanylate kinase homologues. AMQ28_10030 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_10060 SM00861 Transketolase, pyrimidine binding domain AMQ28_10070 SM00487 DEAD-like helicases superfamily AMQ28_10070 SM00490 helicase superfamily c-terminal domain AMQ28_10075 SM00382 ATPases associated with a variety of cellular activities AMQ28_10120 SM00487 DEAD-like helicases superfamily AMQ28_10120 SM00490 helicase superfamily c-terminal domain AMQ28_10130 SM00563 Phosphate acyltransferases AMQ28_10180 SM01403 AMQ28_10180 AMQ28_10200 SM01382 AMQ28_10200 AMQ28_10200 SM01383 AMQ28_10200 AMQ28_10215 SM00322 K homology RNA-binding domain AMQ28_10235 SM01374 AMQ28_10235 AMQ28_10240 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMQ28_10305 SM00363 S4 RNA-binding domain AMQ28_10305 SM01390 AMQ28_10305 AMQ28_10310 SM00662 RNA polymerases D AMQ28_10370 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_10370 SM00955 AMQ28_10370 AMQ28_10465 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_10500 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_10585 SM00450 Rhodanese Homology Domain AMQ28_10610 SM00481 DNA polymerase alpha chain like domain AMQ28_10750 SM00487 DEAD-like helicases superfamily AMQ28_10785 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMQ28_10785 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMQ28_10825 SM00073 Histidine Phosphotransfer domain AMQ28_10825 SM00387 Histidine kinase-like ATPases AMQ28_10825 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_10825 SM00448 cheY-homologous receiver domain AMQ28_10845 SM00954 Region found in RelA / SpoT proteins AMQ28_10860 SM01323 AMQ28_10860 AMQ28_10890 SM00387 Histidine kinase-like ATPases AMQ28_10890 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_11025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_11025 SM00387 Histidine kinase-like ATPases AMQ28_11025 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_11030 SM00448 cheY-homologous receiver domain AMQ28_11030 SM00862 Transcriptional regulatory protein, C terminal AMQ28_11090 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_11115 SM00195 Dual specificity phosphatase, catalytic domain AMQ28_11120 SM00849 Metallo-beta-lactamase superfamily AMQ28_11130 SM00957 SecA DEAD-like domain AMQ28_11130 SM00958 SecA preprotein cross-linking domain AMQ28_11245 SM00650 Ribosomal RNA adenine dimethylases AMQ28_11280 SM00563 Phosphate acyltransferases AMQ28_11285 SM00155 Phospholipase D. Active site motifs. AMQ28_11330 SM00671 Sel1-like repeats. AMQ28_11415 SM00825 Beta-ketoacyl synthase AMQ28_11435 SM00838 Elongation factor G C-terminus AMQ28_11435 SM00889 Elongation factor G, domain IV AMQ28_11470 SM00843 AMQ28_11470 AMQ28_11505 SM00563 Phosphate acyltransferases AMQ28_11565 SM00382 ATPases associated with a variety of cellular activities AMQ28_11570 SM00382 ATPases associated with a variety of cellular activities AMQ28_11590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMQ28_11590 SM00267 diguanylate cyclase AMQ28_11685 SM00845 GatB domain AMQ28_11720 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_11805 SM00244 prohibitin homologues AMQ28_11820 SM00563 Phosphate acyltransferases AMQ28_11840 SM00448 cheY-homologous receiver domain AMQ28_11840 SM00862 Transcriptional regulatory protein, C terminal AMQ28_11845 SM00387 Histidine kinase-like ATPases AMQ28_11845 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_11860 SM00382 ATPases associated with a variety of cellular activities AMQ28_11875 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_11920 SM00822 AMQ28_11920 AMQ28_11950 SM00014 Acid phosphatase homologues AMQ28_12055 SM00450 Rhodanese Homology Domain AMQ28_12080 SM01400 AMQ28_12080 AMQ28_12115 SM00028 Tetratricopeptide repeats AMQ28_12125 SM00400 zinc finger AMQ28_12125 SM00493 AMQ28_12125 AMQ28_12135 SM00363 S4 RNA-binding domain AMQ28_12250 SM00861 Transketolase, pyrimidine binding domain AMQ28_12270 SM00881 CoA binding domain AMQ28_12290 SM00829 Enoylreductase AMQ28_12325 SM00420 helix_turn_helix, Deoxyribose operon repressor AMQ28_12325 SM01134 AMQ28_12325 AMQ28_12340 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMQ28_12350 SM00883 Chaperonin 10 Kd subunit AMQ28_12370 SM00563 Phosphate acyltransferases AMQ28_12415 SM00478 endonuclease III AMQ28_12425 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMQ28_12460 SM00382 ATPases associated with a variety of cellular activities AMQ28_12460 SM00464 Found in ATP-dependent protease La (LON) AMQ28_12470 SM00422 helix_turn_helix, mercury resistance AMQ28_12475 SM00746 metallochaperone-like domain AMQ28_12485 SM00919 Malic enzyme, NAD binding domain AMQ28_12485 SM01274 AMQ28_12485 AMQ28_12520 SM01011 Aminopeptidase P, N-terminal domain AMQ28_12570 SM00479 AMQ28_12570 AMQ28_12575 SM00257 Lysin motif AMQ28_12595 SM00382 ATPases associated with a variety of cellular activities AMQ28_12635 SM00479 AMQ28_12635 AMQ28_12645 SM00267 diguanylate cyclase AMQ28_12660 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_12660 SM00895 AMQ28_12660 AMQ28_12740 SM00463 Small MutS-related domain AMQ28_12765 SM01230 AMQ28_12765 AMQ28_12830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_12905 SM00382 ATPases associated with a variety of cellular activities AMQ28_12940 SM00479 AMQ28_12940 AMQ28_13070 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_13095 SM01040 BRO family, N-terminal domain AMQ28_13125 SM00954 Region found in RelA / SpoT proteins AMQ28_13315 SM01329 AMQ28_13315 AMQ28_13350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_13375 SM00100 Cyclic nucleotide-monophosphate binding domain AMQ28_13375 SM00419 helix_turn_helix, cAMP Regulatory protein AMQ28_13395 SM00344 helix_turn_helix ASNC type AMQ28_13405 SM00563 Phosphate acyltransferases AMQ28_13440 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_13440 SM00876 Biotin and Thiamin Synthesis associated domain AMQ28_13490 SM00861 Transketolase, pyrimidine binding domain AMQ28_13505 SM00867 YceI-like domain AMQ28_13545 SM01012 AMQ28_13545 AMQ28_13565 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_13575 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_13610 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_13625 SM00840 AMQ28_13625 AMQ28_13630 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_13650 SM00382 ATPases associated with a variety of cellular activities AMQ28_13675 SM00382 ATPases associated with a variety of cellular activities AMQ28_13715 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMQ28_13715 SM00534 ATPase domain of DNA mismatch repair MUTS family AMQ28_13740 SM00481 DNA polymerase alpha chain like domain AMQ28_13750 SM00382 ATPases associated with a variety of cellular activities AMQ28_13750 SM00930 AMQ28_13750 AMQ28_13760 SM01209 AMQ28_13760 AMQ28_13760 SM01210 AMQ28_13760 AMQ28_13765 SM00798 AICARFT/IMPCHase bienzyme AMQ28_13765 SM00851 MGS-like domain AMQ28_13795 SM01228 AMQ28_13795 AMQ28_13805 SM00382 ATPases associated with a variety of cellular activities AMQ28_13805 SM00448 cheY-homologous receiver domain AMQ28_13810 SM00091 PAS domain AMQ28_13810 SM00387 Histidine kinase-like ATPases AMQ28_13810 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_13815 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_13845 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_13855 SM00935 Outer membrane protein (OmpH-like) AMQ28_13885 SM00382 ATPases associated with a variety of cellular activities AMQ28_13890 SM00363 S4 RNA-binding domain AMQ28_13930 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMQ28_13995 SM00421 helix_turn_helix, Lux Regulon AMQ28_14040 SM00487 DEAD-like helicases superfamily AMQ28_14040 SM00490 helicase superfamily c-terminal domain AMQ28_14040 SM00982 AMQ28_14040 AMQ28_14040 SM01058 CarD-like/TRCF domain AMQ28_14050 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AMQ28_14065 SM00271 DnaJ molecular chaperone homology domain AMQ28_14100 SM00411 bacterial (prokaryotic) histone like domain AMQ28_14145 SM01264 AMQ28_14145 AMQ28_14185 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMQ28_14200 SM00382 ATPases associated with a variety of cellular activities AMQ28_14200 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_14250 SM01192 AMQ28_14250 AMQ28_14250 SM01193 AMQ28_14250