AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 145 2.5E-26 T 10-10-2018 IPR021131 Ribosomal protein L18e/L15P AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 141 - T 10-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 145 6.3E-44 T 10-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 Gene3D G3DSA:3.100.10.10 73 146 2.8E-12 T 10-10-2018 AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 SUPERFAMILY SSF52080 6 145 2.22E-41 T 10-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AMQ28_10280 31d89830c95df58bdf0cb7dc8adc43f8 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 146 17.608 T 10-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMQ28_12340 b4e7e5d9cda0963aadc611be0124200d 312 SUPERFAMILY SSF111331 5 310 2.35E-57 T 10-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMQ28_12340 b4e7e5d9cda0963aadc611be0124200d 312 Gene3D G3DSA:3.40.50.10330 4 139 3.2E-26 T 10-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMQ28_12340 b4e7e5d9cda0963aadc611be0124200d 312 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 136 6.3E-25 T 10-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMQ28_12340 b4e7e5d9cda0963aadc611be0124200d 312 Gene3D G3DSA:2.60.200.40 140 295 7.1E-18 T 10-10-2018 AMQ28_12340 b4e7e5d9cda0963aadc611be0124200d 312 SMART SM00046 7 139 7.8E-4 T 10-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMQ28_11195 1c060ce7b9545db0549d62835ca644af 137 Pfam PF03259 Roadblock/LC7 domain 24 99 2.9E-5 T 10-10-2018 IPR004942 Roadblock/LAMTOR2 domain AMQ28_11195 1c060ce7b9545db0549d62835ca644af 137 SUPERFAMILY SSF103196 20 134 1.64E-13 T 10-10-2018 AMQ28_11195 1c060ce7b9545db0549d62835ca644af 137 Gene3D G3DSA:3.30.450.30 19 137 2.9E-18 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.1E-15 T 10-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SUPERFAMILY SSF50249 39 197 1.1E-51 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SUPERFAMILY SSF46955 405 475 5.49E-16 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Pfam PF03483 B3/4 domain 211 384 8.0E-66 T 10-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:3.30.70.380 699 792 5.4E-27 T 10-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SMART SM00874 402 471 5.8E-22 T 10-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Pfam PF01588 Putative tRNA binding domain 45 145 9.5E-26 T 10-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:3.30.930.10 486 688 7.0E-51 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SUPERFAMILY SSF54991 694 791 2.88E-28 T 10-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:3.30.56.10 400 474 1.0E-20 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:3.30.56.10 7 179 1.0E-71 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:2.40.50.140 39 154 1.0E-71 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 6.0E-26 T 10-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SMART SM00896 698 791 2.7E-38 T 10-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 5.1E-256 T 10-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SUPERFAMILY SSF55681 467 687 1.19E-46 T 10-10-2018 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Gene3D G3DSA:3.50.40.10 198 393 1.1E-72 T 10-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SMART SM00873 211 384 9.1E-87 T 10-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.415 T 10-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMQ28_05285 ce5c212dc6f3a848b4d9b84c22ea5490 793 SUPERFAMILY SSF56037 204 393 8.37E-68 T 10-10-2018 AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 Gene3D G3DSA:3.40.50.300 11 296 2.9E-90 T 10-10-2018 AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 SUPERFAMILY SSF52540 8 144 3.41E-16 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 307 27.788 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 294 2.3E-84 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 Pfam PF01715 IPP transferase 41 291 7.7E-77 T 10-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMQ28_01785 bc8ee07ba95efd2ae7730e6ae021496b 314 Gene3D G3DSA:1.10.20.140 114 186 2.9E-90 T 10-10-2018 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 SUPERFAMILY SSF51735 6 244 1.08E-80 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.6E-43 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 Gene3D G3DSA:3.40.50.720 1 245 3.4E-79 T 10-10-2018 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 4.7E-93 T 10-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 4.1E-6 T 10-10-2018 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 4.2E-63 T 10-10-2018 AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04790 22b136b9b066db0dab0bb958db5ddbc9 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 12 264 1.0E-96 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 SUPERFAMILY SSF55920 10 268 2.49E-89 T 10-10-2018 IPR036005 Creatinase/aminopeptidase-like AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 Hamap MF_01974 Methionine aminopeptidase [map]. 10 265 41.228 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 95 1.3E-22 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 219 1.3E-22 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 176 188 1.3E-22 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 1.3E-22 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 Gene3D G3DSA:3.90.230.10 10 274 5.2E-107 T 10-10-2018 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 Pfam PF00557 Metallopeptidase family M24 19 256 5.5E-52 T 10-10-2018 IPR000994 Peptidase M24 AMQ28_12855 7f6ae00af6a000c101a62d4209fe8878 275 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 182 200 - T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_08110 1a728c8673432d6d70601051b9f5ec62 106 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 73 2.9E-27 T 10-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMQ28_08110 1a728c8673432d6d70601051b9f5ec62 106 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 3.0E-22 T 10-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMQ28_08110 1a728c8673432d6d70601051b9f5ec62 106 Pfam PF01809 Haemolytic domain 3 68 2.2E-29 T 10-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMQ28_08110 1a728c8673432d6d70601051b9f5ec62 106 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 23.995 T 10-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMQ28_08110 1a728c8673432d6d70601051b9f5ec62 106 SMART SM01234 1 68 1.4E-42 T 10-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Gene3D G3DSA:3.40.50.300 4 278 9.5E-66 T 10-10-2018 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Pfam PF00005 ABC transporter 336 468 1.2E-17 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Pfam PF16326 ABC transporter C-terminal domain 561 629 9.2E-19 T 10-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 SUPERFAMILY SSF52540 309 502 5.06E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Gene3D G3DSA:1.10.287.380 551 635 2.9E-19 T 10-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 SUPERFAMILY SSF52540 3 241 1.37E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 ProSitePatterns PS00211 ABC transporters family signature. 440 454 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 SMART SM00382 344 514 5.1E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 SMART SM00382 28 229 6.7E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Pfam PF12848 ABC transporter 223 296 1.6E-11 T 10-10-2018 IPR032781 ABC-transporter extension domain AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Pfam PF00005 ABC transporter 19 183 4.4E-25 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_06010 cbaa5ef3330968ebe5d3a1182fb8813e 635 Gene3D G3DSA:3.40.50.300 280 550 2.2E-59 T 10-10-2018 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 Gene3D G3DSA:3.40.50.1370 21 321 3.3E-91 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 Gene3D G3DSA:3.40.50.1370 152 310 3.3E-91 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 56 78 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 151 168 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 94 103 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 304 318 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 280 285 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 239 248 2.1E-29 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 20 325 40.239 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 SUPERFAMILY SSF53671 20 324 3.4E-93 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 21 164 7.4E-41 T 10-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 21 323 2.1E-92 T 10-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 174 321 6.0E-29 T 10-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 66 73 - T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 152 163 1.6E-20 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 66 85 1.6E-20 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 276 285 1.6E-20 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_02330 c19f2a01907fe83e37db834b25a8aab8 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 288 311 1.6E-20 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 SUPERFAMILY SSF52540 416 905 1.73E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Gene3D G3DSA:1.10.486.10 528 748 2.2E-108 T 10-10-2018 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Gene3D G3DSA:3.40.50.300 397 898 2.2E-108 T 10-10-2018 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Gene3D G3DSA:3.40.50.10930 2 99 2.2E-11 T 10-10-2018 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 2 1228 13.798 T 10-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 PIRSF PIRSF000980 2 1214 5.1E-150 T 10-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 SUPERFAMILY SSF52980 916 1224 7.51E-38 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 3 897 7.5E-177 T 10-10-2018 AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 SUPERFAMILY SSF52540 3 408 7.7E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06490 bab03bbfb2cc7b0a8f5064f256877620 1230 Gene3D G3DSA:3.40.50.10930 157 385 1.1E-35 T 10-10-2018 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 434 7.1E-194 T 10-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 471 51.707 T 10-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 Gene3D G3DSA:2.40.30.10 241 328 1.0E-27 T 10-10-2018 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 SUPERFAMILY SSF52540 16 235 1.23E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 SUPERFAMILY SSF50465 334 435 4.03E-31 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 SUPERFAMILY SSF50447 242 327 4.71E-23 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 214 1.9E-14 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 PRINTS PR00315 GTP-binding elongation factor signature 26 39 1.3E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 PRINTS PR00315 GTP-binding elongation factor signature 107 117 1.3E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 PRINTS PR00315 GTP-binding elongation factor signature 123 134 1.3E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 PRINTS PR00315 GTP-binding elongation factor signature 160 169 1.3E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 PRINTS PR00315 GTP-binding elongation factor signature 87 95 1.3E-13 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 Gene3D G3DSA:2.40.30.10 331 434 4.4E-33 T 10-10-2018 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 Gene3D G3DSA:3.40.50.300 1 239 2.8E-75 T 10-10-2018 AMQ28_12280 57c0fae7e7e8ee4866497c60b8c07f92 538 Pfam PF00009 Elongation factor Tu GTP binding domain 24 215 2.7E-45 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 SUPERFAMILY SSF50447 190 308 3.06E-29 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 SUPERFAMILY SSF54980 310 395 6.83E-15 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Pfam PF03144 Elongation factor Tu domain 2 227 297 7.3E-9 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 161 1.8E-23 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Gene3D G3DSA:3.30.70.870 314 598 1.8E-131 T 10-10-2018 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 SMART SM00838 403 491 0.0085 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Gene3D G3DSA:3.30.70.240 397 490 1.8E-131 T 10-10-2018 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Gene3D G3DSA:2.40.50.250 491 607 1.8E-131 T 10-10-2018 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Pfam PF00679 Elongation factor G C-terminus 404 484 3.0E-22 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 SUPERFAMILY SSF52540 4 227 6.73E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Gene3D G3DSA:3.40.50.300 4 206 4.4E-62 T 10-10-2018 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.9E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.9E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.9E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.9E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 607 4.5E-281 T 10-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Gene3D G3DSA:2.40.30.10 207 307 7.5E-35 T 10-10-2018 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 Pfam PF00009 Elongation factor Tu GTP binding domain 6 202 5.0E-52 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_04765 8dc4a6d5160d01ff4b0459663f9e2269 611 SUPERFAMILY SSF54980 406 521 2.69E-26 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 SUPERFAMILY SSF51230 65 135 9.82E-22 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 Gene3D G3DSA:2.40.50.100 61 135 2.4E-27 T 10-10-2018 AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 97 1.7E-13 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 66 79 1.7E-13 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 98 111 1.7E-13 T 10-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMQ28_01070 d1d72c6dbd04c232dbea88e1d4107f95 138 Pfam PF00364 Biotin-requiring enzyme 65 135 1.4E-20 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 375 4.5E-67 T 10-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 384 4.1E-187 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 3.5E-44 T 10-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 386 57.032 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 SUPERFAMILY SSF55973 6 110 1.06E-45 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 10-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Gene3D G3DSA:3.30.300.10 12 271 1.5E-173 T 10-10-2018 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Gene3D G3DSA:3.30.300.10 6 234 1.5E-173 T 10-10-2018 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 102 1.2E-41 T 10-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 PIRSF PIRSF000497 1 387 1.1E-170 T 10-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 Gene3D G3DSA:3.30.300.10 103 378 1.5E-173 T 10-10-2018 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 SUPERFAMILY SSF55973 111 233 1.84E-50 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 10-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_13485 bd0c5be6366bc8ea26aaf2189f639d88 388 SUPERFAMILY SSF55973 234 385 1.69E-68 T 10-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 SUPERFAMILY SSF55781 96 272 7.85E-40 T 10-10-2018 AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 SMART SM00346 27 115 3.9E-18 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 Pfam PF01614 Bacterial transcriptional regulator 148 272 4.6E-41 T 10-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 23 273 3.9E-95 T 10-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 SUPERFAMILY SSF46785 29 97 5.73E-10 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 Pfam PF09339 IclR helix-turn-helix domain 30 80 6.0E-13 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 Gene3D G3DSA:1.10.10.10 13 92 3.1E-15 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00755 b390a953c008e2086e498cffb8cd02d5 274 Gene3D G3DSA:3.30.450.40 95 274 1.0E-49 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_03720 4da8f6c965cf6c278c671852fe0661ce 216 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 19 212 30.187 T 10-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMQ28_03720 4da8f6c965cf6c278c671852fe0661ce 216 SUPERFAMILY SSF53335 34 212 1.16E-38 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_03720 4da8f6c965cf6c278c671852fe0661ce 216 Pfam PF01728 FtsJ-like methyltransferase 35 210 2.5E-56 T 10-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMQ28_03720 4da8f6c965cf6c278c671852fe0661ce 216 Gene3D G3DSA:3.40.50.150 31 215 2.3E-59 T 10-10-2018 AMQ28_03720 4da8f6c965cf6c278c671852fe0661ce 216 PIRSF PIRSF005461 3 216 3.0E-79 T 10-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMQ28_04945 b31735e5caac091f0e64cc10c5bfdfa7 332 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 196 320 5.2E-29 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMQ28_04945 b31735e5caac091f0e64cc10c5bfdfa7 332 SUPERFAMILY SSF64383 196 325 7.32E-27 T 10-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 AMQ28_04945 b31735e5caac091f0e64cc10c5bfdfa7 332 SMART SM00771 193 321 7.9E-40 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMQ28_04945 b31735e5caac091f0e64cc10c5bfdfa7 332 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 208 329 2.0E-46 T 10-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AMQ28_04945 b31735e5caac091f0e64cc10c5bfdfa7 332 Gene3D G3DSA:3.30.1400.10 193 329 5.1E-29 T 10-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 AMQ28_11725 02d9906266be62d1f6a4f1cb1f06c8e1 459 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 446 5.8E-156 T 10-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMQ28_11725 02d9906266be62d1f6a4f1cb1f06c8e1 459 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 261 9.8E-67 T 10-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMQ28_11725 02d9906266be62d1f6a4f1cb1f06c8e1 459 Pfam PF06974 Protein of unknown function (DUF1298) 300 443 1.3E-41 T 10-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 SUPERFAMILY SSF74653 364 442 4.71E-10 T 10-10-2018 AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 Pfam PF13103 TonB C terminal 366 426 8.1E-6 T 10-10-2018 AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 TIGRFAM TIGR02794 tolA_full: protein TolA 238 441 5.8E-24 T 10-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 TIGRFAM TIGR02794 tolA_full: protein TolA 14 268 1.7E-18 T 10-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 Pfam PF08017 Fibrinogen binding protein 127 367 5.1E-22 T 10-10-2018 IPR012969 Fibrinogen binding protein AMQ28_03135 ea1c555ced32e7d28d23de8542a8b5e6 443 Gene3D G3DSA:3.30.1150.10 337 441 7.1E-14 T 10-10-2018 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 SUPERFAMILY SSF54913 1 112 5.08E-46 T 10-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 PIRSF PIRSF039144 1 112 2.5E-55 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 83 103 2.0E-44 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 23 41 2.0E-44 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 52 75 2.0E-44 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 PRINTS PR00340 P-II protein signature 2 17 2.0E-44 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 SMART SM00938 4 105 8.4E-67 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 10-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 Gene3D G3DSA:3.30.70.120 1 112 1.0E-46 T 10-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-43 T 10-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMQ28_06875 b061b3e4c16ca8ac5542667d38b1a6bc 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 10-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 Gene3D G3DSA:3.40.50.300 1 194 8.8E-35 T 10-10-2018 AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 Pfam PF14493 Helix-turn-helix domain 467 567 1.5E-15 T 10-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 Pfam PF05970 PIF1-like helicase 193 297 2.3E-7 T 10-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 Pfam PF05970 PIF1-like helicase 11 182 2.6E-37 T 10-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 SMART SM00382 12 168 2.8E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 SUPERFAMILY SSF52540 125 405 6.91E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01835 19a7dd96fff9dd3fb7ad8c43913f991e 571 SUPERFAMILY SSF52540 3 178 3.2E-27 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07610 4ba2743e5ad8030dcda306f49723616c 411 Gene3D G3DSA:1.20.1250.20 19 202 2.5E-24 T 10-10-2018 AMQ28_07610 4ba2743e5ad8030dcda306f49723616c 411 SUPERFAMILY SSF103473 1 401 5.89E-59 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_07610 4ba2743e5ad8030dcda306f49723616c 411 Pfam PF07690 Major Facilitator Superfamily 31 195 3.3E-22 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_07610 4ba2743e5ad8030dcda306f49723616c 411 Pfam PF07690 Major Facilitator Superfamily 236 405 2.8E-18 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_07610 4ba2743e5ad8030dcda306f49723616c 411 Gene3D G3DSA:1.20.1250.20 225 408 4.5E-21 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 6.2E-60 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.70.1430 561 656 0.0 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82693 40 132 5.75E-24 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82693 560 651 6.28E-9 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:1.20.1640.10 10 506 0.0 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82866 798 1021 3.27E-49 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82866 289 488 1.03E-45 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82693 138 323 2.88E-19 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.70.1430 40 809 0.0 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.2090.10 706 801 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:1.20.1640.10 507 1015 0.0 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Pfam PF00873 AcrB/AcrD/AcrF family 5 1018 3.4E-267 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.70.1440 657 858 0.0 T 10-10-2018 AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82714 707 799 8.5E-9 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 SUPERFAMILY SSF82714 182 264 6.93E-15 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_04185 55116d86a5097b07d256f62dbfcefe71 1034 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 10-10-2018 AMQ28_01390 02720273b44d61847949a3c821a9abd6 205 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 23 205 1.1E-79 T 10-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AMQ28_01390 02720273b44d61847949a3c821a9abd6 205 Pfam PF00510 Cytochrome c oxidase subunit III 20 203 2.5E-15 T 10-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01390 02720273b44d61847949a3c821a9abd6 205 Gene3D G3DSA:1.20.120.80 17 205 6.2E-53 T 10-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01390 02720273b44d61847949a3c821a9abd6 205 SUPERFAMILY SSF81452 7 203 1.57E-55 T 10-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 61 414 8.1E-112 T 10-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 414 3.6E-131 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 PIRSF PIRSF000726 1 62 2.1E-20 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 PIRSF PIRSF000726 53 422 4.0E-138 T 10-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 SUPERFAMILY SSF55021 340 416 2.65E-25 T 10-10-2018 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 Gene3D G3DSA:3.40.1160.10 1 257 1.4E-87 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 Pfam PF01842 ACT domain 279 336 1.2E-10 T 10-10-2018 IPR002912 ACT domain AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 SUPERFAMILY SSF55021 260 338 1.21E-17 T 10-10-2018 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 SUPERFAMILY SSF53633 4 255 3.14E-77 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 Gene3D G3DSA:3.30.2130.10 258 424 2.3E-60 T 10-10-2018 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 Pfam PF00696 Amino acid kinase family 3 229 1.5E-51 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 Pfam PF13840 ACT domain 349 410 1.3E-17 T 10-10-2018 IPR027795 CASTOR, ACT domain AMQ28_02410 3ed97feb19e5fd4eb8e0c3b40f257ea0 426 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 10-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 SUPERFAMILY SSF47973 6 149 1.44E-59 T 10-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 PIRSF PIRSF002122 3 156 1.3E-58 T 10-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 10-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.166 T 10-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 1.2E-67 T 10-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 4.9E-65 T 10-10-2018 IPR023798 Ribosomal protein S7 domain AMQ28_11430 f5b60b6e3cc160eaa407e06962ed5450 156 Gene3D G3DSA:1.10.455.10 2 155 2.4E-59 T 10-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 Gene3D G3DSA:3.10.310.10 117 263 3.3E-80 T 10-10-2018 AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 SUPERFAMILY SSF54506 2 275 2.27E-67 T 10-10-2018 AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 PIRSF PIRSF016184 1 275 1.0E-48 T 10-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 Gene3D G3DSA:3.10.310.10 3 267 3.3E-80 T 10-10-2018 AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 271 1.1E-37 T 10-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMQ28_02115 dcc36f1e98dbb014dc6b87e7c0a943e1 275 Pfam PF02567 Phenazine biosynthesis-like protein 6 270 1.6E-52 T 10-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMQ28_07435 4017fe7caec10738bb88ea122a9adbe3 113 Pfam PF02643 Uncharacterized ACR, COG1430 41 110 1.4E-6 T 10-10-2018 IPR003795 Protein of unknown function DUF192 AMQ28_07435 4017fe7caec10738bb88ea122a9adbe3 113 Gene3D G3DSA:2.60.120.1140 10 113 1.5E-7 T 10-10-2018 IPR038695 Saro_0823-like superfamily AMQ28_11495 a039967ea94bfddde67f91fb9701d201 244 SUPERFAMILY SSF63848 137 235 3.53E-26 T 10-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 AMQ28_11495 a039967ea94bfddde67f91fb9701d201 244 Gene3D G3DSA:2.160.20.70 119 241 1.2E-25 T 10-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 AMQ28_11495 a039967ea94bfddde67f91fb9701d201 244 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 140 235 1.4E-25 T 10-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AMQ28_11495 a039967ea94bfddde67f91fb9701d201 244 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 3 243 19.398 T 10-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMQ28_11495 a039967ea94bfddde67f91fb9701d201 244 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 235 5.8E-40 T 10-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 Gene3D G3DSA:1.10.287.470 92 164 6.4E-71 T 10-10-2018 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 SUPERFAMILY SSF111369 48 217 1.57E-20 T 10-10-2018 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 Gene3D G3DSA:2.40.420.20 43 350 6.4E-71 T 10-10-2018 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 352 1.1E-66 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 265 1.9E-18 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 Gene3D G3DSA:2.40.30.170 44 279 6.4E-71 T 10-10-2018 AMQ28_07865 db955439d5848cfc17b156d2e487a6b9 368 Gene3D G3DSA:2.40.50.100 58 204 6.4E-71 T 10-10-2018 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Gene3D G3DSA:2.40.240.10 363 566 9.0E-77 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 51 360 1.5E-105 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 233 243 3.9E-7 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 83 96 3.9E-7 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 PRINTS PR00987 Glutamyl-tRNA synthetase signature 54 66 3.9E-7 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 363 548 6.1E-56 T 10-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 SUPERFAMILY SSF52374 51 369 1.74E-93 T 10-10-2018 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 51 569 1.6E-225 T 10-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Gene3D G3DSA:1.10.1160.10 284 362 5.5E-33 T 10-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Gene3D G3DSA:3.90.800.10 124 232 4.9E-100 T 10-10-2018 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Gene3D G3DSA:3.40.50.620 51 270 4.9E-100 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 SUPERFAMILY SSF50715 363 568 8.37E-68 T 10-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 23 569 49.597 T 10-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 AMQ28_13980 51d2a6e84f94a4cbb6f25fd4c00904f1 574 Gene3D G3DSA:2.40.240.10 371 485 9.0E-77 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 10-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 6.3E-59 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.6E-35 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.6E-35 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.6E-35 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.6E-35 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.6E-35 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 45.919 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 Gene3D G3DSA:3.30.420.10 2 158 3.6E-51 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 SUPERFAMILY SSF53098 3 155 4.17E-52 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_13460 c556c989f7df913b356ebd4453a44ce9 181 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 7.5E-62 T 10-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Gene3D G3DSA:3.40.50.80 202 335 1.3E-35 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Pfam PF00175 Oxidoreductase NAD-binding domain 215 317 1.8E-21 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 1.1E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 156 163 1.1E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 1.1E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 SUPERFAMILY SSF52343 205 335 1.83E-33 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Gene3D G3DSA:2.40.30.10 105 201 2.4E-25 T 10-10-2018 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Gene3D G3DSA:3.10.20.30 1 104 2.1E-30 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Pfam PF00970 Oxidoreductase FAD-binding domain 111 205 2.3E-20 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 SUPERFAMILY SSF54292 10 101 1.06E-26 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 139 151 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 208 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 156 163 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 239 248 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 9.3E-23 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 88 4.9E-16 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMQ28_00605 b733b002157f5780a93c8728a869f392 338 SUPERFAMILY SSF63380 108 205 2.87E-24 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_00605 b733b002157f5780a93c8728a869f392 338 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 10-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 Pfam PF00578 AhpC/TSA family 6 132 1.9E-34 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 PIRSF PIRSF000239 1 187 3.5E-55 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 2.4E-6 T 10-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 9.2E-103 T 10-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 SUPERFAMILY SSF52833 1 186 3.68E-58 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_09040 7a0bbaf7b7443467b4e07e60d742cbe8 187 Gene3D G3DSA:3.40.30.10 1 186 1.0E-64 T 10-10-2018 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 SUPERFAMILY SSF53850 23 330 1.38E-83 T 10-10-2018 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 Gene3D G3DSA:3.40.190.10 118 328 3.3E-129 T 10-10-2018 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 149 157 - T 10-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 Gene3D G3DSA:3.40.190.10 30 298 3.3E-129 T 10-10-2018 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 Pfam PF13531 Bacterial extracellular solute-binding protein 48 283 4.2E-42 T 10-10-2018 AMQ28_02990 3d27705e2173ac7625e98dbfd9240c7c 336 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 20 329 3.1E-144 T 10-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 SUPERFAMILY SSF54980 301 379 1.22E-17 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Gene3D G3DSA:3.30.70.2570 488 562 1.4E-32 T 10-10-2018 IPR038363 LepA, C-terminal domain superfamily AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Gene3D G3DSA:3.30.70.3380 377 487 3.3E-38 T 10-10-2018 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 PRINTS PR00315 GTP-binding elongation factor signature 15 28 1.5E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.5E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.5E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.5E-14 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Gene3D G3DSA:2.40.30.10 195 293 1.6E-31 T 10-10-2018 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 TIGRFAM TIGR01393 lepA: elongation factor 4 12 604 1.3E-287 T 10-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Pfam PF03144 Elongation factor Tu domain 2 214 284 7.0E-11 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Pfam PF06421 GTP-binding protein LepA C-terminus 496 602 6.8E-50 T 10-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AMQ28_02950 6679a6462b251eee742640198bad3a24 605 SUPERFAMILY SSF54980 408 502 1.44E-24 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Gene3D G3DSA:3.30.70.870 295 376 6.7E-34 T 10-10-2018 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Pfam PF00009 Elongation factor Tu GTP binding domain 12 190 1.3E-51 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 SUPERFAMILY SSF52540 5 236 2.35E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Gene3D G3DSA:3.40.50.300 8 194 3.0E-69 T 10-10-2018 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 181 2.9E-18 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_02950 6679a6462b251eee742640198bad3a24 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Pfam PF00679 Elongation factor G C-terminus 408 493 4.4E-20 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like AMQ28_02950 6679a6462b251eee742640198bad3a24 605 Hamap MF_00071 Elongation factor 4 [lepA]. 1 605 290.596 T 10-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMQ28_10850 9eac068473b16141b102b7079082175b 323 SUPERFAMILY SSF82866 114 300 4.58E-37 T 10-10-2018 AMQ28_10850 9eac068473b16141b102b7079082175b 323 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 49 292 2.3E-73 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMQ28_10850 9eac068473b16141b102b7079082175b 323 Gene3D G3DSA:1.20.1640.10 108 304 7.2E-13 T 10-10-2018 AMQ28_10850 9eac068473b16141b102b7079082175b 323 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 77 290 3.9E-47 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 PRINTS PR01755 Bacterial translocase SecF protein signature 161 175 1.2E-26 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 PRINTS PR01755 Bacterial translocase SecF protein signature 209 227 1.2E-26 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 PRINTS PR01755 Bacterial translocase SecF protein signature 241 256 1.2E-26 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 PRINTS PR01755 Bacterial translocase SecF protein signature 48 63 1.2E-26 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 Pfam PF07549 SecD/SecF GG Motif 43 70 3.5E-9 T 10-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMQ28_10850 9eac068473b16141b102b7079082175b 323 Pfam PF02355 Protein export membrane protein 126 299 1.6E-60 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMQ28_10850 9eac068473b16141b102b7079082175b 323 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 21 303 26.224 T 10-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 PIRSF PIRSF002786 1 314 3.2E-87 T 10-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 Gene3D G3DSA:3.30.1300.30 42 300 1.9E-65 T 10-10-2018 AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 Pfam PF03934 Type II secretion system (T2SS), protein K 29 306 1.2E-74 T 10-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 SUPERFAMILY SSF158544 101 205 2.09E-28 T 10-10-2018 IPR038072 GspK, central domain superfamily AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 SUPERFAMILY SSF54523 37 310 8.0E-19 T 10-10-2018 AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 Gene3D G3DSA:1.10.40.60 208 275 1.9E-65 T 10-10-2018 IPR038072 GspK, central domain superfamily AMQ28_01680 636efa5c5b9092a5f661a18a05196a3f 315 Gene3D G3DSA:1.10.40.60 99 207 1.9E-65 T 10-10-2018 IPR038072 GspK, central domain superfamily AMQ28_00650 650a637a0784517b2621227496d88b12 126 Pfam PF00175 Oxidoreductase NAD-binding domain 15 104 2.2E-11 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_00650 650a637a0784517b2621227496d88b12 126 SUPERFAMILY SSF52343 17 125 1.44E-25 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_00650 650a637a0784517b2621227496d88b12 126 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 22 31 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00650 650a637a0784517b2621227496d88b12 126 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 89 97 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00650 650a637a0784517b2621227496d88b12 126 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 66 82 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00650 650a637a0784517b2621227496d88b12 126 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 35 46 1.5E-6 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_00650 650a637a0784517b2621227496d88b12 126 Gene3D G3DSA:3.40.50.80 5 126 2.7E-30 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_03505 0e74ba64ee656a487cb9293f0f5997e9 84 Gene3D G3DSA:3.10.20.30 6 84 4.5E-9 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_03505 0e74ba64ee656a487cb9293f0f5997e9 84 Pfam PF02597 ThiS family 24 84 3.3E-5 T 10-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMQ28_03505 0e74ba64ee656a487cb9293f0f5997e9 84 SUPERFAMILY SSF54285 6 84 1.18E-6 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Gene3D G3DSA:3.40.1190.10 94 322 4.4E-82 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 42 463 1.9E-122 T 10-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 465 30.175 T 10-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Pfam PF01225 Mur ligase family, catalytic domain 36 91 1.8E-7 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 SUPERFAMILY SSF53244 325 463 6.41E-27 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 SUPERFAMILY SSF53623 114 323 6.93E-53 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Gene3D G3DSA:3.40.1390.10 1 93 2.4E-34 T 10-10-2018 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Pfam PF08245 Mur ligase middle domain 120 303 2.2E-42 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 403 1.9E-13 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 Gene3D G3DSA:3.90.190.20 323 468 1.9E-41 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_09700 097e3df42cbe2624379f1020d80dc551 468 SUPERFAMILY SSF63418 12 108 2.49E-21 T 10-10-2018 IPR035911 MurE/MurF, N-terminal AMQ28_10405 56ad582e86cc0d1777dab6fa29953514 213 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 7 199 9.6E-44 T 10-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMQ28_10405 56ad582e86cc0d1777dab6fa29953514 213 SUPERFAMILY SSF56529 3 201 9.68E-61 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_10405 56ad582e86cc0d1777dab6fa29953514 213 Gene3D G3DSA:3.90.850.10 1 206 8.8E-63 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 293 322 - T 10-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 SUPERFAMILY SSF53335 3 359 7.92E-52 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 Gene3D G3DSA:3.40.50.150 8 356 1.5E-130 T 10-10-2018 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 Gene3D G3DSA:3.40.1350.30 39 181 1.5E-130 T 10-10-2018 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 5 359 3.8E-160 T 10-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 1 360 42.298 T 10-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 5 359 1.3E-163 T 10-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AMQ28_14030 e93ed1ec1c2ac0f05dfb7140185a94e1 360 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 342 352 - T 10-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 Pfam PF01026 TatD related DNase 3 254 4.6E-71 T 10-10-2018 IPR001130 TatD family GO:0016788 AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 255 5.0E-82 T 10-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 SUPERFAMILY SSF51556 2 257 6.01E-81 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 PIRSF PIRSF005902 1 257 3.7E-72 T 10-10-2018 IPR001130 TatD family GO:0016788 AMQ28_01705 7e0ce529f27b018d50dec3763a73628c 257 Gene3D G3DSA:3.20.20.140 1 257 2.2E-85 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 359 374 2.9E-5 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 88 108 2.9E-5 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Pfam PF13533 Biotin-lipoyl like 80 124 2.0E-8 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 SUPERFAMILY SSF111369 220 293 1.14E-7 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Gene3D G3DSA:2.40.50.100 77 109 4.4E-11 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Gene3D G3DSA:2.40.30.170 258 375 2.2E-35 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Gene3D G3DSA:1.10.287.470 110 136 4.4E-11 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Gene3D G3DSA:1.10.287.470 137 219 7.1E-9 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 SUPERFAMILY SSF111369 80 155 4.32E-9 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 Pfam PF13437 HlyD family secretion protein 243 362 3.6E-14 T 10-10-2018 AMQ28_04450 2fead663b6e90bcdd227474c1ef3bdfa 376 SUPERFAMILY SSF111369 147 204 6.15E-6 T 10-10-2018 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF00575 S1 RNA binding domain 621 692 1.3E-18 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 PIRSF PIRSF005499 3 697 1.9E-284 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 243 322 5.2E-21 T 10-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Gene3D G3DSA:3.30.230.70 234 551 1.6E-111 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF54791 558 642 4.93E-22 T 10-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF55666 146 235 1.96E-29 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF01138 3' exoribonuclease family, domain 1 18 145 1.4E-18 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 5.4E-19 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF00013 KH domain 559 615 7.9E-12 T 10-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF54211 295 490 8.6E-46 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SMART SM00316 622 692 2.1E-26 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Gene3D G3DSA:3.30.1370.10 552 622 4.2E-19 T 10-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF54211 3 145 1.72E-45 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.822 T 10-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF55666 452 550 8.84E-29 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Gene3D G3DSA:2.40.50.140 623 696 1.6E-28 T 10-10-2018 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF03725 3' exoribonuclease family, domain 2 461 530 9.1E-7 T 10-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 4.5E-14 T 10-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 Gene3D G3DSA:3.30.230.70 1 229 5.0E-76 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SMART SM00322 554 619 5.9E-13 T 10-10-2018 IPR004087 K Homology domain GO:0003676 AMQ28_06465 6b8ca06db70fec91a757eb56621767ee 697 SUPERFAMILY SSF50249 621 694 4.03E-20 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_02740 05087e0aa1eeb479b93a6b18d317d657 161 SUPERFAMILY SSF55811 3 147 7.72E-30 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_02740 05087e0aa1eeb479b93a6b18d317d657 161 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_02740 05087e0aa1eeb479b93a6b18d317d657 161 Pfam PF00293 NUDIX domain 7 126 3.3E-17 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_02740 05087e0aa1eeb479b93a6b18d317d657 161 Gene3D G3DSA:3.90.79.10 1 153 7.5E-38 T 10-10-2018 AMQ28_08845 77bbfcf21fc6cccf975bb5c9e0db1d17 300 SUPERFAMILY SSF53098 122 287 4.25E-38 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08845 77bbfcf21fc6cccf975bb5c9e0db1d17 300 Gene3D G3DSA:3.30.420.10 119 274 1.4E-14 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_08845 77bbfcf21fc6cccf975bb5c9e0db1d17 300 Pfam PF13276 HTH-like domain 52 103 3.1E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_08845 77bbfcf21fc6cccf975bb5c9e0db1d17 300 Pfam PF00665 Integrase core domain 128 242 7.8E-27 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Pfam PF02151 UvrB/uvrC motif 640 671 8.4E-9 T 10-10-2018 IPR001943 UVR domain GO:0005515 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 SUPERFAMILY SSF46600 635 672 1.22E-10 T 10-10-2018 IPR036876 UVR domain superfamily AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 SMART SM00490 462 548 5.9E-21 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Pfam PF00271 Helicase conserved C-terminal domain 444 546 1.7E-17 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Gene3D G3DSA:3.40.50.300 417 591 1.9E-48 T 10-10-2018 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 SUPERFAMILY SSF52540 6 417 6.22E-142 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 SMART SM00487 12 428 1.5E-28 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Gene3D G3DSA:3.40.50.300 1 239 6.3E-76 T 10-10-2018 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Pfam PF04851 Type III restriction enzyme, res subunit 18 100 2.3E-11 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Pfam PF12344 Ultra-violet resistance protein B 554 594 1.7E-19 T 10-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 SUPERFAMILY SSF52540 36 585 1.77E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Gene3D G3DSA:3.40.50.300 273 416 7.9E-52 T 10-10-2018 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 8 669 0.0 T 10-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Gene3D G3DSA:4.10.860.10 617 674 5.9E-9 T 10-10-2018 AMQ28_02865 dd8791af5d3b0e2ea3c9231898450c82 674 Hamap MF_00204 UvrABC system protein B [uvrB]. 6 671 42.84 T 10-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 Pfam PF00072 Response regulator receiver domain 3 112 2.5E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 Gene3D G3DSA:3.40.50.2300 1 121 6.6E-33 T 10-10-2018 AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 Gene3D G3DSA:1.10.10.10 123 223 2.6E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 SUPERFAMILY SSF52172 3 175 8.04E-36 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 SMART SM00862 145 216 3.7E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 5.7E-24 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_07540 d5b2ad7da8d57475a9293c1bf4985360 224 SMART SM00448 1 112 2.0E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04845 90e628ed3f386a1f1d451f98e773f340 257 Pfam PF08241 Methyltransferase domain 52 142 1.3E-11 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMQ28_04845 90e628ed3f386a1f1d451f98e773f340 257 Gene3D G3DSA:3.40.50.150 38 255 1.0E-21 T 10-10-2018 AMQ28_04845 90e628ed3f386a1f1d451f98e773f340 257 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 4 255 27.452 T 10-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 AMQ28_04845 90e628ed3f386a1f1d451f98e773f340 257 SUPERFAMILY SSF53335 10 185 2.92E-25 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_04845 90e628ed3f386a1f1d451f98e773f340 257 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 12 254 6.6E-59 T 10-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 Gene3D G3DSA:3.30.750.44 61 344 8.9E-70 T 10-10-2018 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 SMART SM00245 181 369 1.2E-50 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 374 5.9E-71 T 10-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 Pfam PF03572 Peptidase family S41 207 367 7.8E-45 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 Gene3D G3DSA:2.30.42.10 110 195 8.9E-70 T 10-10-2018 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 SUPERFAMILY SSF50156 120 185 9.93E-7 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 Gene3D G3DSA:3.90.226.10 196 365 8.9E-70 T 10-10-2018 AMQ28_06805 7f7d709720631b9555aba5b600bb06cd 390 SUPERFAMILY SSF52096 37 370 7.12E-63 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_04900 e641dba6913d70d7da8282e601c1505d 445 SUPERFAMILY SSF53098 133 290 2.58E-17 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_04900 e641dba6913d70d7da8282e601c1505d 445 Gene3D G3DSA:3.30.420.10 129 329 2.4E-15 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_04900 e641dba6913d70d7da8282e601c1505d 445 Pfam PF13518 Helix-turn-helix domain 11 61 9.6E-9 T 10-10-2018 AMQ28_04900 e641dba6913d70d7da8282e601c1505d 445 SUPERFAMILY SSF46689 10 115 2.87E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_02570 b0e413d9b557db72606554bf9e8d0cb2 279 Gene3D G3DSA:1.20.910.10 31 278 2.2E-20 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMQ28_02570 b0e413d9b557db72606554bf9e8d0cb2 279 SUPERFAMILY SSF48613 37 271 3.61E-6 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 Gene3D G3DSA:3.30.230.10 1 120 1.5E-35 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 116 15.927 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 Pfam PF00825 Ribonuclease P 6 113 1.1E-23 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 11 116 1.0E-21 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 10-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 101 1.0E-37 T 10-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMQ28_08105 c5db63c2069bc6d1fc70edbc4870f594 129 SUPERFAMILY SSF54211 6 119 1.31E-25 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 401 7.9E-143 T 10-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 4.6E-30 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 4.6E-30 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 4.6E-30 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 4.6E-30 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 Pfam PF00482 Type II secretion system (T2SS), protein F 69 191 2.0E-29 T 10-10-2018 IPR018076 Type II secretion system F domain AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 Pfam PF00482 Type II secretion system (T2SS), protein F 271 393 1.3E-28 T 10-10-2018 IPR018076 Type II secretion system F domain AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 Gene3D G3DSA:1.20.81.30 254 364 5.9E-26 T 10-10-2018 AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 Gene3D G3DSA:1.20.81.30 55 170 1.8E-27 T 10-10-2018 AMQ28_06420 afcb5ee52ae0c86e873081afd3cef408 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 10-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AMQ28_06475 1743ab025cc1b9a61aa7fcae3dfb89f4 432 SUPERFAMILY SSF56601 37 386 2.56E-66 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_06475 1743ab025cc1b9a61aa7fcae3dfb89f4 432 Gene3D G3DSA:3.40.710.30 34 408 4.6E-74 T 10-10-2018 AMQ28_06475 1743ab025cc1b9a61aa7fcae3dfb89f4 432 Pfam PF00144 Beta-lactamase 47 389 1.3E-50 T 10-10-2018 IPR001466 Beta-lactamase-related AMQ28_04520 d50abdbb04de03547a22053405b5c9ba 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 17.933 T 10-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMQ28_04520 d50abdbb04de03547a22053405b5c9ba 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 96 5.1E-21 T 10-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMQ28_12230 b2d6b49d4afc875b59e5611c671828b8 121 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 9 119 4.7E-33 T 10-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMQ28_12230 b2d6b49d4afc875b59e5611c671828b8 121 SUPERFAMILY SSF81343 4 119 2.78E-25 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12230 b2d6b49d4afc875b59e5611c671828b8 121 PIRSF PIRSF000169 1 121 3.6E-39 T 10-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMQ28_12230 b2d6b49d4afc875b59e5611c671828b8 121 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 106 3.7E-7 T 10-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12230 b2d6b49d4afc875b59e5611c671828b8 121 Gene3D G3DSA:1.20.1300.10 1 120 1.7E-28 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 PIRSF PIRSF006276 1 146 2.9E-23 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 SUPERFAMILY SSF52402 3 145 1.67E-40 T 10-10-2018 AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 Pfam PF00582 Universal stress protein family 3 145 2.4E-33 T 10-10-2018 IPR006016 UspA AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 Gene3D G3DSA:3.40.50.620 1 146 8.0E-42 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 PRINTS PR01438 Universal stress protein signature 123 145 2.0E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 PRINTS PR01438 Universal stress protein signature 105 117 2.0E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_03770 4b5ae4dca32d35951c84060d642c5621 146 PRINTS PR01438 Universal stress protein signature 3 21 2.0E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_14135 ca30b234a17cac9bc7b7071e8514500a 334 Gene3D G3DSA:3.40.1190.20 7 314 6.9E-76 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_14135 ca30b234a17cac9bc7b7071e8514500a 334 Gene3D G3DSA:3.30.1110.10 14 133 6.9E-76 T 10-10-2018 AMQ28_14135 ca30b234a17cac9bc7b7071e8514500a 334 Pfam PF00294 pfkB family carbohydrate kinase 57 319 6.1E-52 T 10-10-2018 IPR011611 Carbohydrate kinase PfkB AMQ28_14135 ca30b234a17cac9bc7b7071e8514500a 334 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 62 86 - T 10-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMQ28_14135 ca30b234a17cac9bc7b7071e8514500a 334 SUPERFAMILY SSF53613 1 322 2.18E-73 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 5.6E-230 T 10-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Pfam PF10415 Fumarase C C-terminus 407 459 2.3E-24 T 10-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 90.158 T 10-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 SUPERFAMILY SSF48557 4 458 4.71E-158 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 8.3E-5 T 10-10-2018 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 332 8.3E-5 T 10-10-2018 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Gene3D G3DSA:1.10.40.30 406 463 7.7E-26 T 10-10-2018 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Gene3D G3DSA:1.10.275.10 4 137 3.6E-58 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Gene3D G3DSA:1.20.200.10 138 405 4.2E-119 T 10-10-2018 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 9.3E-35 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 9.3E-35 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 9.3E-35 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 9.3E-35 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_00370 91c0ecd9ecdb35635997d70ed65decf6 464 Pfam PF00206 Lyase 11 341 9.4E-116 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 7.6E-33 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 SUPERFAMILY SSF143800 1 68 5.49E-26 T 10-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 29.721 T 10-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 Gene3D G3DSA:2.30.170.50 1 70 8.1E-31 T 10-10-2018 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 PRINTS PR01249 Ribosomal protein L31 signature 32 47 7.4E-21 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 PRINTS PR01249 Ribosomal protein L31 signature 47 65 7.4E-21 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.4E-21 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02670 269de6fcac9d955778028f4388b5f3a6 74 Pfam PF01197 Ribosomal protein L31 1 65 1.6E-29 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 Pfam PF00588 SpoU rRNA Methylase family 98 241 2.4E-36 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 SUPERFAMILY SSF75217 70 248 1.7E-44 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 SMART SM00967 6 82 3.8E-16 T 10-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 247 2.0E-63 T 10-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 Gene3D G3DSA:3.40.1280.10 81 248 6.9E-51 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 SUPERFAMILY SSF55315 2 78 2.0E-17 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 Gene3D G3DSA:3.30.1330.30 1 78 1.8E-23 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like AMQ28_06645 1c4b2b1dae5d7d8547c583befbcf0e39 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 1.7E-17 T 10-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PIRSF PIRSF000350 1 469 3.9E-85 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 471 5.6E-158 T 10-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 45 55 - T 10-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 44 59 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 1.2E-70 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 Gene3D G3DSA:3.30.390.30 353 478 1.7E-43 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 355 462 1.8E-35 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 5.1E-68 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 SUPERFAMILY SSF55424 349 472 2.06E-38 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 SUPERFAMILY SSF51905 1 344 8.64E-63 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.9E-34 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.9E-34 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.9E-34 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.9E-34 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 2.9E-34 T 10-10-2018 AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 Gene3D G3DSA:3.50.50.60 163 284 1.6E-112 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12260 afa43adc3f5de23537fc3308002876f3 478 Gene3D G3DSA:3.50.50.60 5 341 1.6E-112 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10055 7b473b350d59b7a1eacede4a1b60b09a 200 Pfam PF00925 GTP cyclohydrolase II 8 171 1.3E-65 T 10-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_10055 7b473b350d59b7a1eacede4a1b60b09a 200 Gene3D G3DSA:3.40.50.10990 2 175 5.9E-71 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_10055 7b473b350d59b7a1eacede4a1b60b09a 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 197 42.771 T 10-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_10055 7b473b350d59b7a1eacede4a1b60b09a 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 1.9E-76 T 10-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_10055 7b473b350d59b7a1eacede4a1b60b09a 200 SUPERFAMILY SSF142695 3 174 8.63E-60 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 Pfam PF00216 Bacterial DNA-binding protein 6 96 3.7E-27 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 SMART SM00411 6 96 3.9E-36 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 7 97 2.2E-38 T 10-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 52 71 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 Gene3D G3DSA:4.10.520.10 6 98 6.3E-31 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 SUPERFAMILY SSF47729 6 96 1.24E-27 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 PRINTS PR01727 Prokaryotic integration host factor signature 64 77 1.3E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 PRINTS PR01727 Prokaryotic integration host factor signature 46 61 1.3E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_01640 0549b3ef75e1444fbaa5f3b62070fcc8 101 PRINTS PR01727 Prokaryotic integration host factor signature 80 94 1.3E-18 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 216 3.5E-28 T 10-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Gene3D G3DSA:1.10.8.50 129 267 5.5E-45 T 10-10-2018 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 SMART SM00898 2 113 4.2E-44 T 10-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Pfam PF06827 Zinc finger found in FPG and IleRS 239 267 2.8E-7 T 10-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 111 2.3E-27 T 10-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 SUPERFAMILY SSF57716 215 267 6.84E-15 T 10-10-2018 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Gene3D G3DSA:3.20.190.10 2 126 1.0E-35 T 10-10-2018 IPR035937 MutM-like, N-terminal AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 SUPERFAMILY SSF46946 128 220 2.49E-29 T 10-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 266 6.2E-88 T 10-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 SUPERFAMILY SSF81624 2 136 1.57E-35 T 10-10-2018 IPR035937 MutM-like, N-terminal AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 SMART SM01232 127 219 3.8E-45 T 10-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMQ28_04750 200236b0994152f76851e11ecb4e81da 285 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 267 39.242 T 10-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMQ28_12590 c43a200a8e26742dbf8e2b9951b539c5 337 Gene3D G3DSA:1.10.3720.10 125 336 4.1E-18 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_12590 c43a200a8e26742dbf8e2b9951b539c5 337 SUPERFAMILY SSF161098 132 319 2.22E-21 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_12590 c43a200a8e26742dbf8e2b9951b539c5 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 336 6.3E-27 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 11 247 2.8E-120 T 10-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 Gene3D G3DSA:3.40.50.300 9 248 2.6E-69 T 10-10-2018 AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 SMART SM00382 35 220 8.2E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 Pfam PF00005 ABC transporter 26 173 6.3E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 243 7.5E-9 T 10-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMQ28_13650 185d66bd6eb268c322f4b1289a6c4873 248 SUPERFAMILY SSF52540 11 243 3.08E-62 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 369 8.7E-172 T 10-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 127 362 9.1E-92 T 10-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 365 56.451 T 10-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 Gene3D G3DSA:3.20.20.105 1 368 1.1E-170 T 10-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 SUPERFAMILY SSF51713 1 365 1.7E-160 T 10-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_10865 157a49399d7bd495e135f6ca0e84e337 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 368 8.7E-163 T 10-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 168 306 2.0E-39 T 10-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 SUPERFAMILY SSF51735 159 315 1.57E-30 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 152 3.7E-46 T 10-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 27.904 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 SUPERFAMILY SSF69742 1 153 4.71E-45 T 10-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 419 2.2E-117 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Gene3D G3DSA:3.30.460.30 2 154 1.6E-51 T 10-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 SUPERFAMILY SSF69075 317 414 3.01E-19 T 10-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 412 3.2E-14 T 10-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 PIRSF PIRSF000445 1 429 5.7E-138 T 10-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 95 118 - T 10-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AMQ28_12120 bf1ccd67a14dac380d8ba6c66db7ffe6 429 Gene3D G3DSA:3.40.50.720 157 313 7.3E-41 T 10-10-2018 AMQ28_10805 44119d437441613a62eb6bd9a71645d6 133 Pfam PF02410 Ribosomal silencing factor during starvation 31 125 9.7E-26 T 10-10-2018 AMQ28_10805 44119d437441613a62eb6bd9a71645d6 133 Gene3D G3DSA:3.30.460.10 22 133 4.2E-36 T 10-10-2018 AMQ28_10805 44119d437441613a62eb6bd9a71645d6 133 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 29 125 2.0E-35 T 10-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMQ28_10805 44119d437441613a62eb6bd9a71645d6 133 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 21 126 24.403 T 10-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMQ28_10805 44119d437441613a62eb6bd9a71645d6 133 SUPERFAMILY SSF81301 24 129 6.21E-36 T 10-10-2018 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 Gene3D G3DSA:3.20.20.70 2 332 1.4E-130 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 PIRSF PIRSF000164 15 336 4.6E-94 T 10-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 333 50.612 T 10-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 334 2.8E-128 T 10-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 Pfam PF01180 Dihydroorotate dehydrogenase 44 334 8.5E-86 T 10-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 77 96 - T 10-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMQ28_02220 20a59c1b35247db5e35e7e6546b01cdc 336 SUPERFAMILY SSF51395 1 334 5.86E-105 T 10-10-2018 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 PIRSF PIRSF000194 2 170 9.2E-53 T 10-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 PRINTS PR00070 Dihydrofolate reductase signature 46 57 2.1E-15 T 10-10-2018 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 PRINTS PR00070 Dihydrofolate reductase signature 33 41 2.1E-15 T 10-10-2018 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 PRINTS PR00070 Dihydrofolate reductase signature 104 118 2.1E-15 T 10-10-2018 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 PRINTS PR00070 Dihydrofolate reductase signature 19 29 2.1E-15 T 10-10-2018 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 Pfam PF00186 Dihydrofolate reductase 8 170 1.2E-52 T 10-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 19 41 - T 10-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 SUPERFAMILY SSF53597 5 170 3.65E-49 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMQ28_05885 897975f76ec36dc78d5e2034e9307d75 170 Gene3D G3DSA:3.40.430.10 2 170 3.9E-50 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 SMART SM00732 8 108 4.3E-26 T 10-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 Pfam PF03652 Holliday junction resolvase 9 139 3.3E-34 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 11 139 9.5E-31 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 SUPERFAMILY SSF53098 8 140 7.74E-34 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 8 143 20.771 T 10-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMQ28_06665 2846b83c241917b54b4c7214e9bf589f 147 Gene3D G3DSA:3.30.420.140 7 141 8.5E-34 T 10-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMQ28_12780 81d5e20c97e39f24a04dc9e58843f1e5 292 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 8 292 28.222 T 10-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMQ28_12780 81d5e20c97e39f24a04dc9e58843f1e5 292 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 13 291 2.2E-96 T 10-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMQ28_12780 81d5e20c97e39f24a04dc9e58843f1e5 292 Gene3D G3DSA:1.10.357.140 26 171 6.7E-39 T 10-10-2018 AMQ28_12780 81d5e20c97e39f24a04dc9e58843f1e5 292 Pfam PF01040 UbiA prenyltransferase family 31 273 3.7E-58 T 10-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMQ28_12780 81d5e20c97e39f24a04dc9e58843f1e5 292 Gene3D G3DSA:1.20.120.1780 172 292 3.8E-12 T 10-10-2018 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Gene3D G3DSA:3.40.50.720 92 254 1.1E-107 T 10-10-2018 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 253 2.7E-37 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 355 41.049 T 10-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 195 211 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMQ28_03440 e115ade112560204bbff960de3b94e51 355 SUPERFAMILY SSF52283 17 112 1.45E-17 T 10-10-2018 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Gene3D G3DSA:3.30.1370.170 290 351 4.3E-12 T 10-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Pfam PF11890 Domain of unknown function (DUF3410) 297 350 4.3E-14 T 10-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 SUPERFAMILY SSF51735 91 254 1.53E-35 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Gene3D G3DSA:3.40.50.720 2 272 1.1E-107 T 10-10-2018 AMQ28_03440 e115ade112560204bbff960de3b94e51 355 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 29 273 1.1E-18 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 SUPERFAMILY SSF52833 103 196 3.73E-21 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 492 2.6E-45 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 Gene3D G3DSA:3.50.50.60 327 450 2.7E-106 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 Gene3D G3DSA:3.40.30.80 1 199 2.2E-62 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 2.0E-230 T 10-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 Gene3D G3DSA:3.50.50.60 212 509 2.7E-106 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 SUPERFAMILY SSF52833 1 100 9.51E-27 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 Pfam PF13192 Thioredoxin domain 120 194 6.3E-10 T 10-10-2018 IPR012336 Thioredoxin-like fold AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 10-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.3E-38 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.3E-38 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.3E-38 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.3E-38 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.3E-38 T 10-10-2018 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 PIRSF PIRSF000238 1 521 3.7E-251 T 10-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMQ28_02585 be989f2eefdb3478f7fe9c2b583adf54 521 SUPERFAMILY SSF51905 206 516 1.06E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SUPERFAMILY SSF52540 580 810 1.62E-53 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 701 717 - T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Pfam PF00488 MutS domain V 624 809 4.1E-79 T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Gene3D G3DSA:1.10.1420.10 400 516 2.1E-95 T 10-10-2018 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Gene3D G3DSA:3.40.1170.10 5 126 4.0E-48 T 10-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Gene3D G3DSA:3.30.420.110 134 273 5.2E-35 T 10-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 13 868 23.78 T 10-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SUPERFAMILY SSF48334 278 578 8.76E-81 T 10-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Pfam PF05188 MutS domain II 141 264 1.8E-20 T 10-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Gene3D G3DSA:1.10.1420.10 277 572 2.1E-95 T 10-10-2018 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Pfam PF01624 MutS domain I 14 124 3.3E-40 T 10-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 13 873 0.0 T 10-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SMART SM00533 293 604 6.9E-93 T 10-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Pfam PF05192 MutS domain III 281 572 1.6E-34 T 10-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SMART SM00534 620 806 3.4E-110 T 10-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SUPERFAMILY SSF53150 119 277 1.44E-36 T 10-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 SUPERFAMILY SSF55271 7 120 1.15E-38 T 10-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 PIRSF PIRSF037677 7 842 1.5E-148 T 10-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Gene3D G3DSA:3.40.50.300 582 873 8.3E-95 T 10-10-2018 AMQ28_13715 d10d7b8c650344354770d95d0d397125 878 Pfam PF05190 MutS family domain IV 441 531 3.8E-31 T 10-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 SUPERFAMILY SSF88946 19 126 5.1E-39 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 256 282 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Pfam PF04545 Sigma-70, region 4 233 283 1.2E-15 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Pfam PF04542 Sigma-70 region 2 57 126 4.0E-16 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 PIRSF PIRSF000770 13 289 4.5E-32 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 19 287 1.5E-121 T 10-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Gene3D G3DSA:1.20.120.1810 22 126 1.5E-26 T 10-10-2018 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Gene3D G3DSA:1.10.10.10 213 288 3.3E-14 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 PRINTS PR00046 Major sigma-70 factor signature 256 271 9.7E-18 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 PRINTS PR00046 Major sigma-70 factor signature 237 249 9.7E-18 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 PRINTS PR00046 Major sigma-70 factor signature 81 94 9.7E-18 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 PRINTS PR00046 Major sigma-70 factor signature 271 282 9.7E-18 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 SUPERFAMILY SSF88659 201 287 4.49E-18 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Pfam PF00140 Sigma-70 factor, region 1.2 20 44 2.6E-5 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 81 94 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 5 288 51.918 T 10-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_02265 6a7d33c1d0268d4915825ffe135d9ae1 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 52 286 8.5E-33 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMQ28_02275 f0593f840be8fcb11d2900635f0d0195 65 Gene3D G3DSA:3.10.20.30 1 65 2.2E-18 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_02275 f0593f840be8fcb11d2900635f0d0195 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 1.6E-17 T 10-10-2018 IPR010035 ThiS, thiamine-biosynthesis AMQ28_02275 f0593f840be8fcb11d2900635f0d0195 65 Pfam PF02597 ThiS family 6 65 1.5E-9 T 10-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMQ28_02275 f0593f840be8fcb11d2900635f0d0195 65 SUPERFAMILY SSF54285 3 64 2.29E-15 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 Pfam PF04079 Segregation and condensation complex subunit ScpB 21 179 1.9E-47 T 10-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 SUPERFAMILY SSF46785 15 92 3.81E-12 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 Gene3D G3DSA:1.10.10.10 11 92 1.1E-13 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 SUPERFAMILY SSF46785 95 170 1.87E-22 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 Gene3D G3DSA:1.10.10.10 93 188 1.8E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 21 184 4.0E-33 T 10-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMQ28_04830 a989b5ecb06652b2cc2529177d766949 196 PIRSF PIRSF019345 5 196 6.5E-53 T 10-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 PIRSF PIRSF001267 1 502 6.4E-197 T 10-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 SUPERFAMILY SSF53067 135 311 1.8E-47 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 SUPERFAMILY SSF53067 11 131 4.58E-35 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 Pfam PF02541 Ppx/GppA phosphatase family 25 308 4.3E-84 T 10-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 11 306 3.1E-98 T 10-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 Gene3D G3DSA:3.30.420.40 12 303 1.8E-90 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 Gene3D G3DSA:3.30.420.150 115 295 1.8E-90 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 Gene3D G3DSA:1.10.3210.10 310 505 1.7E-55 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 SUPERFAMILY SSF109604 313 500 1.08E-44 T 10-10-2018 AMQ28_05260 0897f80f18eb530dfc6ec2c909b82779 506 Pfam PF01966 HD domain 335 419 1.6E-4 T 10-10-2018 IPR006674 HD domain AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 141 6.8E-38 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 343 42.35 T 10-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 SUPERFAMILY SSF55347 149 317 1.03E-46 T 10-10-2018 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 320 3.0E-19 T 10-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 349 9.8E-128 T 10-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 Gene3D G3DSA:3.30.360.10 147 317 2.3E-127 T 10-10-2018 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 SUPERFAMILY SSF51735 2 164 3.11E-55 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 10-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 Gene3D G3DSA:3.40.50.720 4 335 2.3E-127 T 10-10-2018 AMQ28_14185 6dee1129eeedf4b2ad1af7e3e4b83393 349 SMART SM00859 3 141 6.8E-58 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 Pfam PF00107 Zinc-binding dehydrogenase 180 302 4.3E-21 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 SUPERFAMILY SSF50129 8 164 1.12E-40 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 138 5.3E-24 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 173 200 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 Gene3D G3DSA:3.90.180.10 19 336 1.2E-111 T 10-10-2018 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 SMART SM00829 15 336 1.4E-8 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 SUPERFAMILY SSF51735 143 306 1.71E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07825 6233d29dd7918ea0b663f7471b3cc82f 341 Gene3D G3DSA:3.40.50.720 154 308 1.2E-111 T 10-10-2018 AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 Gene3D G3DSA:3.40.50.1100 116 238 5.6E-195 T 10-10-2018 AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 73 399 9.8E-58 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 Gene3D G3DSA:3.40.50.1100 23 438 5.6E-195 T 10-10-2018 AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 10 438 2.7E-223 T 10-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 SUPERFAMILY SSF53686 77 437 4.39E-49 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_03560 0275b79caf70ea3a09dd68fa1a400c53 443 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 443 262.426 T 10-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AMQ28_09715 2e169d29330462872613771f7b676744 842 SUPERFAMILY SSF53955 54 260 1.41E-72 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_09715 2e169d29330462872613771f7b676744 842 Pfam PF00912 Transglycosylase 64 235 7.0E-59 T 10-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09715 2e169d29330462872613771f7b676744 842 Pfam PF17092 Penicillin-binding protein OB-like domain 325 419 3.2E-20 T 10-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09715 2e169d29330462872613771f7b676744 842 Pfam PF00905 Penicillin binding protein transpeptidase domain 424 594 2.2E-25 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMQ28_09715 2e169d29330462872613771f7b676744 842 Gene3D G3DSA:1.10.3810.10 55 250 1.8E-71 T 10-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09715 2e169d29330462872613771f7b676744 842 SUPERFAMILY SSF56601 217 756 5.48E-122 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_09715 2e169d29330462872613771f7b676744 842 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 74 747 3.1E-180 T 10-10-2018 AMQ28_09715 2e169d29330462872613771f7b676744 842 Gene3D G3DSA:2.40.50.140 322 416 1.2E-28 T 10-10-2018 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 112 9.1E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 140 153 9.1E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 154 167 9.1E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 262 276 9.1E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 Pfam PF00561 alpha/beta hydrolase fold 72 302 2.4E-23 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 SUPERFAMILY SSF53474 48 317 5.36E-52 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03590 e57032b8ee567a67a89a34549abbc0be 318 Gene3D G3DSA:3.40.50.1820 36 317 7.8E-64 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 Pfam PF02575 YbaB/EbfC DNA-binding family 7 99 5.4E-29 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 105 1.2E-24 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 PIRSF PIRSF004555 1 109 9.8E-32 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 SUPERFAMILY SSF82607 7 103 8.11E-29 T 10-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 Gene3D G3DSA:3.30.1310.10 1 109 1.1E-34 T 10-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMQ28_00070 7767a58b8409d93b3949be28f5577838 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 96 20.37 T 10-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 4.7E-35 T 10-10-2018 AMQ28_06540 3055514499785727e0765290efd9e85f 946 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 798 924 9.1E-34 T 10-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AMQ28_06540 3055514499785727e0765290efd9e85f 946 Pfam PF00361 Proton-conducting membrane transporter 130 413 2.8E-65 T 10-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06540 3055514499785727e0765290efd9e85f 946 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 107 1.4E-7 T 10-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06540 3055514499785727e0765290efd9e85f 946 Pfam PF13244 Domain of unknown function (DUF4040) 622 685 6.2E-18 T 10-10-2018 IPR025383 Domain of unknown function DUF4040 AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 SMART SM00257 53 97 1.3E-12 T 10-10-2018 IPR018392 LysM domain AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 SUPERFAMILY SSF51261 53 266 1.2E-40 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 Gene3D G3DSA:2.70.70.10 139 266 1.1E-29 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 Gene3D G3DSA:3.10.350.10 48 111 7.4E-15 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 Pfam PF01551 Peptidase family M23 170 262 1.5E-26 T 10-10-2018 IPR016047 Peptidase M23 AMQ28_02710 4967403074e79d2e431d13daded71fbe 269 Pfam PF01476 LysM domain 54 96 5.0E-13 T 10-10-2018 IPR018392 LysM domain AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Gene3D G3DSA:3.40.50.720 23 110 2.4E-32 T 10-10-2018 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 SUPERFAMILY SSF53244 326 474 8.61E-45 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Pfam PF08245 Mur ligase middle domain 127 307 4.5E-29 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 SUPERFAMILY SSF51984 22 109 2.35E-29 T 10-10-2018 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 SUPERFAMILY SSF53623 108 325 1.7E-72 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 416 1.8E-21 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 480 42.315 T 10-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Pfam PF01225 Mur ligase family, catalytic domain 24 122 3.3E-28 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Gene3D G3DSA:3.40.1190.10 111 323 1.7E-79 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 Gene3D G3DSA:3.90.190.20 324 481 2.8E-45 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_08615 212f0c700456cb3df0f6a2e07d010947 482 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 24 472 5.2E-168 T 10-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 320 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 Gene3D G3DSA:1.20.1250.20 12 438 3.6E-96 T 10-10-2018 AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 SUPERFAMILY SSF103473 8 436 6.8E-93 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_06930 96d15c96ecb9194235dc9ef8bb7ccbcb 439 Pfam PF00083 Sugar (and other) transporter 33 437 3.7E-51 T 10-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 SUPERFAMILY SSF53223 2 121 2.11E-37 T 10-10-2018 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 258 266 - T 10-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 1.9E-37 T 10-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 Gene3D G3DSA:3.40.50.10860 7 275 6.0E-101 T 10-10-2018 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 281 34.63 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 SUPERFAMILY SSF51735 126 278 7.84E-44 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 280 2.7E-60 T 10-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 6.7E-61 T 10-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMQ28_12305 ce4e849aa2547c8a0537dd2ba5aa7605 282 Gene3D G3DSA:3.40.50.720 5 257 6.0E-101 T 10-10-2018 AMQ28_09195 4e912a81aeb979948007d058eeab3530 125 SUPERFAMILY SSF55729 6 108 2.03E-9 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_09195 4e912a81aeb979948007d058eeab3530 125 Gene3D G3DSA:3.40.630.30 1 111 6.4E-15 T 10-10-2018 AMQ28_09195 4e912a81aeb979948007d058eeab3530 125 Pfam PF12568 Acetyltransferase (GNAT) domain 3 98 1.1E-8 T 10-10-2018 IPR000182 GNAT domain AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 337 5.1E-126 T 10-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 Gene3D G3DSA:3.40.50.1440 9 225 1.9E-80 T 10-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 ProSitePatterns PS01135 FtsZ protein signature 2. 103 124 - T 10-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 PRINTS PR00423 Cell division protein FtsZ signature 132 153 8.6E-46 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 PRINTS PR00423 Cell division protein FtsZ signature 194 216 8.6E-46 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 PRINTS PR00423 Cell division protein FtsZ signature 217 238 8.6E-46 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 PRINTS PR00423 Cell division protein FtsZ signature 104 124 8.6E-46 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 21 178 1.0E-43 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 Gene3D G3DSA:3.30.1330.20 226 337 1.7E-34 T 10-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 Pfam PF12327 FtsZ family, C-terminal domain 227 322 4.9E-31 T 10-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 SMART SM00865 212 331 3.9E-47 T 10-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 SUPERFAMILY SSF52490 18 213 5.23E-69 T 10-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 15 377 36.257 T 10-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 SUPERFAMILY SSF55307 209 325 1.3E-37 T 10-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 SMART SM00864 19 210 8.0E-112 T 10-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMQ28_08635 82f72f51c9d75fa4ef1d3aad1f244e8b 396 ProSitePatterns PS01134 FtsZ protein signature 1. 50 84 - T 10-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 Gene3D G3DSA:3.40.50.720 125 266 1.3E-103 T 10-10-2018 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 SMART SM00829 15 327 1.2E-51 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 91 2.5E-10 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 SUPERFAMILY SSF51735 116 293 1.42E-43 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 SUPERFAMILY SSF50129 5 154 1.02E-40 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 6 328 3.7E-139 T 10-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 Pfam PF00107 Zinc-binding dehydrogenase 156 276 1.3E-22 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMQ28_12290 4bcc5c1aabd066105c95868ba5bb90f8 330 Gene3D G3DSA:3.90.180.10 18 327 1.3E-103 T 10-10-2018 AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 Gene3D G3DSA:3.30.70.1060 1 94 1.6E-35 T 10-10-2018 AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 4.0E-26 T 10-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 8.3E-48 T 10-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 SUPERFAMILY SSF54909 1 95 8.31E-39 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 2.0E-40 T 10-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMQ28_00625 35cf3079029be71b4740c9162581f23f 96 PIRSF PIRSF001486 1 94 3.3E-49 T 10-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 AMQ28_02325 70a81540bb4a5420fcef0cec28c2be0a 411 Gene3D G3DSA:3.20.20.140 53 365 2.4E-77 T 10-10-2018 AMQ28_02325 70a81540bb4a5420fcef0cec28c2be0a 411 Gene3D G3DSA:2.30.40.10 10 409 2.4E-77 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_02325 70a81540bb4a5420fcef0cec28c2be0a 411 SUPERFAMILY SSF51556 53 364 7.85E-70 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_02325 70a81540bb4a5420fcef0cec28c2be0a 411 SUPERFAMILY SSF51338 5 409 5.59E-9 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_13360 4d3d140f609e2e7dd877e341c475f144 115 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 107 1.0E-8 T 10-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMQ28_10350 e99302319a197c4861633e7920e55e3b 732 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 313 723 5.0E-17 T 10-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 3.5E-22 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 2.7E-36 T 10-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 SUPERFAMILY SSF89360 1 95 1.8E-31 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 2 106 3.8E-50 T 10-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 Gene3D G3DSA:2.60.300.12 1 106 2.2E-36 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_14070 39a0cb9cf9e04dbcbec7e6945cc6d576 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 10-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 1.1E-27 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 Pfam PF01649 Ribosomal protein S20 2 84 1.2E-25 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 SUPERFAMILY SSF46992 3 86 1.19E-30 T 10-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.71 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 Gene3D G3DSA:1.20.58.110 1 87 3.0E-27 T 10-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_13910 91b09eb9d3cf98ada3309f6886e4ea46 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 8.0E-28 T 10-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Gene3D G3DSA:2.40.30.10 29 127 1.8E-15 T 10-10-2018 AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 SUPERFAMILY SSF52343 125 252 3.54E-21 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 269 309 3.6E-4 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 SUPERFAMILY SSF54292 245 339 5.11E-14 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Gene3D G3DSA:3.10.20.30 253 340 3.7E-10 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Pfam PF00970 Oxidoreductase FAD-binding domain 35 127 3.4E-9 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Gene3D G3DSA:3.40.50.80 128 252 8.8E-22 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 SUPERFAMILY SSF63380 24 129 2.15E-20 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_08350 917c4b3587b03b3bf985cc402e960c0e 340 Pfam PF00175 Oxidoreductase NAD-binding domain 138 232 2.6E-8 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 SMART SM00271 4 62 3.6E-34 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Pfam PF00226 DnaJ domain 5 67 6.6E-30 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 PRINTS PR00625 DnaJ domain signature 25 40 2.3E-33 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 PRINTS PR00625 DnaJ domain signature 7 25 2.3E-33 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 PRINTS PR00625 DnaJ domain signature 42 62 2.3E-33 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 PRINTS PR00625 DnaJ domain signature 62 81 2.3E-33 T 10-10-2018 IPR001623 DnaJ domain AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 SUPERFAMILY SSF49493 115 268 9.55E-20 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 10-10-2018 IPR018253 DnaJ domain, conserved site AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Gene3D G3DSA:1.10.287.110 1 115 1.2E-38 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Gene3D G3DSA:2.60.260.20 119 250 3.0E-36 T 10-10-2018 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Gene3D G3DSA:2.60.260.20 255 367 3.3E-30 T 10-10-2018 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 370 41.034 T 10-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 SUPERFAMILY SSF46565 1 109 1.57E-36 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 SUPERFAMILY SSF57938 136 211 1.83E-21 T 10-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Pfam PF01556 DnaJ C terminal domain 123 334 2.9E-42 T 10-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 4.8E-139 T 10-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 SUPERFAMILY SSF49493 260 345 2.09E-22 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Gene3D G3DSA:2.10.230.10 149 209 3.0E-36 T 10-10-2018 AMQ28_07850 6d9a5947682c4cc6f5c51a942b245f88 371 Pfam PF00684 DnaJ central domain 149 209 3.7E-14 T 10-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 24.894 T 10-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 5.9E-20 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 SUPERFAMILY SSF54534 80 156 7.72E-18 T 10-10-2018 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Gene3D G3DSA:3.10.50.30 77 158 1.3E-26 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 157 47.433 T 10-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 156 8.0E-68 T 10-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 SUPERFAMILY SSF46557 3 78 4.58E-25 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 PIRSF PIRSF006092 1 158 8.5E-41 T 10-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Gene3D G3DSA:1.10.287.180 1 76 1.4E-28 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03610 ef2a71c2b4acae828d5c237aa292c2ba 164 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.9E-23 T 10-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 SUPERFAMILY SSF56042 175 341 9.27E-60 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 Gene3D G3DSA:3.30.1330.10 10 174 3.7E-67 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 Pfam PF02769 AIR synthase related protein, C-terminal domain 180 343 1.5E-35 T 10-10-2018 IPR010918 PurM-like, C-terminal domain AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 SUPERFAMILY SSF55326 11 174 5.08E-52 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 11 338 7.4E-142 T 10-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 Gene3D G3DSA:3.90.650.10 175 346 1.7E-66 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 11 353 46.336 T 10-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_03200 c7ff321da46857c3fae55a9523d34e59 355 Pfam PF00586 AIR synthase related protein, N-terminal domain 63 168 2.1E-15 T 10-10-2018 IPR016188 PurM-like, N-terminal domain AMQ28_02695 cccecc62ca43124c39d254c9f8b299a9 113 Pfam PF00462 Glutaredoxin 21 85 5.8E-17 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMQ28_02695 cccecc62ca43124c39d254c9f8b299a9 113 Gene3D G3DSA:3.40.30.10 6 109 6.2E-30 T 10-10-2018 AMQ28_02695 cccecc62ca43124c39d254c9f8b299a9 113 SUPERFAMILY SSF52833 7 108 7.14E-33 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_02695 cccecc62ca43124c39d254c9f8b299a9 113 PIRSF PIRSF005894 2 112 8.8E-47 T 10-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AMQ28_02695 cccecc62ca43124c39d254c9f8b299a9 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 10 105 1.5E-43 T 10-10-2018 IPR004480 Monothiol glutaredoxin-related AMQ28_01535 8416897048889c80de6a4590397fca5e 216 Pfam PF01810 LysE type translocator 17 214 7.4E-38 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_01535 8416897048889c80de6a4590397fca5e 216 PIRSF PIRSF006324 2 216 5.7E-46 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_12445 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_12445 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_12445 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_12445 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_03975 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_03975 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_03975 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_03975 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09620 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09620 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09620 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_09620 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09105 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09105 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09105 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_09105 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_08965 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08965 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_08965 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_08965 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_01230 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_01230 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_01230 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_01230 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_04245 a86ec219722f20a079d41d57a7f296fa 275 SUPERFAMILY SSF53098 110 269 2.78E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_04245 a86ec219722f20a079d41d57a7f296fa 275 Gene3D G3DSA:3.30.420.10 107 272 6.6E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_04245 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF13276 HTH-like domain 36 88 3.4E-13 T 10-10-2018 IPR025948 HTH-like domain AMQ28_04245 a86ec219722f20a079d41d57a7f296fa 275 Pfam PF00665 Integrase core domain 112 223 3.2E-23 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_04335 6807e066a40ce8febd291074bd898e6e 586 Pfam PF13289 SIR2-like domain 121 251 8.9E-16 T 10-10-2018 IPR039444 SIR2-like domain AMQ28_04335 6807e066a40ce8febd291074bd898e6e 586 SUPERFAMILY SSF52467 19 242 3.97E-10 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 6.9E-135 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 Pfam PF01264 Chorismate synthase 10 345 2.3E-136 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 Gene3D G3DSA:3.60.150.10 1 363 1.7E-159 T 10-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 10-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 PIRSF PIRSF001456 3 359 6.0E-136 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.105 T 10-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_00235 38d030c4da6560d328c6e6594de4ef1e 364 SUPERFAMILY SSF103263 4 351 1.57E-142 T 10-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 29 37 - T 10-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 Pfam PF00710 Asparaginase, N-terminal 26 217 7.2E-52 T 10-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 PIRSF PIRSF500176 23 353 2.1E-81 T 10-10-2018 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 26 353 2.5E-110 T 10-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 PIRSF PIRSF001220 22 353 3.4E-86 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 PRINTS PR00139 Asparaginase/glutaminase family signature 27 38 5.4E-22 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 PRINTS PR00139 Asparaginase/glutaminase family signature 107 125 5.4E-22 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 PRINTS PR00139 Asparaginase/glutaminase family signature 287 305 5.4E-22 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 SUPERFAMILY SSF53774 25 352 5.36E-91 T 10-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 Gene3D G3DSA:3.40.50.40 240 353 1.5E-34 T 10-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 108 118 - T 10-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 SMART SM00870 26 347 1.4E-117 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_09070 a78952ec8df8eb4197dd239288939e68 353 Gene3D G3DSA:3.40.50.1170 24 239 5.9E-85 T 10-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 AMQ28_03070 3ff57a3fb6b6227e737f9336f595b409 253 Gene3D G3DSA:3.40.109.10 20 253 1.8E-52 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_03070 3ff57a3fb6b6227e737f9336f595b409 253 Pfam PF00881 Nitroreductase family 29 230 8.1E-34 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMQ28_03070 3ff57a3fb6b6227e737f9336f595b409 253 SUPERFAMILY SSF55469 24 250 1.96E-46 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_07040 5a9d4d5e8c4942ffa8f21f2c5debcb88 141 Pfam PF11162 Protein of unknown function (DUF2946) 12 138 7.8E-7 T 10-10-2018 IPR021333 Protein of unknown function DUF2946 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 27 243 3.4E-63 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 120 6.2E-38 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 120 146 6.2E-38 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 25 52 6.2E-38 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 171 199 6.2E-38 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 6 255 15.683 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_05605 f7009d38c8df2f8987ff4ecc6b333b6a 261 Pfam PF00902 Sec-independent protein translocase protein (TatC) 29 238 3.7E-59 T 10-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Gene3D G3DSA:3.30.160.20 210 305 8.5E-95 T 10-10-2018 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 349 37.91 T 10-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 SUPERFAMILY SSF75620 15 346 5.62E-130 T 10-10-2018 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 SMART SM00937 69 179 2.2E-58 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 4 347 7.0E-156 T 10-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Pfam PF00472 RF-1 domain 212 321 9.4E-39 T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Pfam PF03462 PCRF domain 15 204 4.6E-60 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Gene3D G3DSA:1.20.58.410 1 100 1.7E-27 T 10-10-2018 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 Gene3D G3DSA:3.30.70.1660 114 342 8.5E-95 T 10-10-2018 AMQ28_08700 993ddf8a3e9930bfd95b9d3cdc88789c 349 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 229 245 - T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Gene3D G3DSA:1.10.1740.10 312 398 3.0E-28 T 10-10-2018 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 SUPERFAMILY SSF55347 127 274 3.27E-60 T 10-10-2018 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 PIRSF PIRSF006205 2 398 2.8E-146 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 SUPERFAMILY SSF51735 3 151 1.39E-41 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.2E-37 T 10-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 SUPERFAMILY SSF69055 304 393 2.49E-27 T 10-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Gene3D G3DSA:3.40.50.720 1 151 1.4E-53 T 10-10-2018 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 133 6.7E-42 T 10-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 392 44.307 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 394 2.3E-139 T 10-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_13840 eb3c9e08b83d1519db18837aa42294dd 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 239 1.6E-38 T 10-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 334 2.7E-58 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 159 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 49 64 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 186 211 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 5.8E-53 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 Gene3D G3DSA:3.50.50.60 15 337 1.6E-89 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 SUPERFAMILY SSF55424 352 468 1.03E-29 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 SUPERFAMILY SSF51905 14 327 5.18E-57 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PIRSF PIRSF000350 3 468 8.9E-70 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 1.1E-29 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 1.1E-29 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 186 204 1.1E-29 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.1E-29 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 1.1E-29 T 10-10-2018 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 461 6.0E-27 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 Gene3D G3DSA:3.30.390.30 352 470 2.5E-31 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_02900 14ffbb0819ffcde57c92a1d5f566f495 471 Gene3D G3DSA:3.50.50.60 159 277 1.6E-89 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 Pfam PF08212 Lipocalin-like domain 45 192 2.7E-45 T 10-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 ProSitePatterns PS00213 Lipocalin signature. 46 57 - T 10-10-2018 IPR022272 Lipocalin family conserved site AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 Gene3D G3DSA:2.40.128.20 28 194 1.2E-47 T 10-10-2018 IPR012674 Calycin AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 PIRSF PIRSF036893 10 195 7.2E-55 T 10-10-2018 IPR022271 Lipocalin, ApoD type AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 PRINTS PR01171 Bacterial lipocalin signature 82 91 1.7E-7 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 PRINTS PR01171 Bacterial lipocalin signature 181 191 1.7E-7 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 PRINTS PR01171 Bacterial lipocalin signature 45 59 1.7E-7 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 PRINTS PR01171 Bacterial lipocalin signature 154 165 1.7E-7 T 10-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 AMQ28_02860 7964fa2c95f493fb769da180513c7660 195 SUPERFAMILY SSF50814 36 194 3.74E-43 T 10-10-2018 IPR012674 Calycin AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 SUPERFAMILY SSF111148 1 89 8.24E-34 T 10-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 24.307 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 PIRSF PIRSF029827 1 90 7.0E-37 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 2.0E-32 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 Gene3D G3DSA:1.10.3880.10 1 90 5.9E-32 T 10-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 AMQ28_09290 fc8b887b049cc4714f70fafef51a71a8 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.4E-36 T 10-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 Gene3D G3DSA:3.40.640.10 71 338 1.1E-131 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 15 455 4.7E-245 T 10-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 Pfam PF00202 Aminotransferase class-III 34 447 1.5E-91 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 Gene3D G3DSA:3.90.1150.10 23 441 1.1E-131 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 SUPERFAMILY SSF53383 24 449 7.03E-119 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 PIRSF PIRSF000521 137 407 4.6E-33 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02805 a21d99fdc91de317b6ecb0d59bfafc4b 457 PIRSF PIRSF000521 6 144 6.9E-7 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 SUPERFAMILY SSF47323 685 879 1.16E-25 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 437 593 5.9E-7 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 640 680 3.5E-7 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Gene3D G3DSA:3.40.50.620 38 587 0.0 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 SUPERFAMILY SSF52374 10 689 9.71E-144 T 10-10-2018 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Gene3D G3DSA:3.10.20.590 820 879 1.8E-19 T 10-10-2018 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Gene3D G3DSA:3.90.740.10 233 433 0.0 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 545 567 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 158 174 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 506 524 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 190 203 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 578 588 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 221 240 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 PRINTS PR00985 Leucyl-tRNA synthetase signature 132 149 3.5E-48 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 9 879 22.74 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 227 422 4.5E-66 T 10-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Pfam PF08264 Anticodon-binding domain of tRNA 723 842 3.4E-12 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 SUPERFAMILY SSF50677 232 431 1.26E-47 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Gene3D G3DSA:3.10.330.110 588 650 0.0 T 10-10-2018 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 10 879 0.0 T 10-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Pfam PF09334 tRNA synthetases class I (M) 41 177 4.9E-19 T 10-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05845 775e590cda2fb0d43cd04ba94267ad25 879 Gene3D G3DSA:1.10.730.10 14 811 0.0 T 10-10-2018 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 PRINTS PR00050 Cold shock protein signature 7 22 6.9E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 PRINTS PR00050 Cold shock protein signature 27 36 6.9E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 PRINTS PR00050 Cold shock protein signature 42 60 6.9E-18 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 SUPERFAMILY SSF50249 2 69 2.36E-24 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 Gene3D G3DSA:2.40.50.140 1 70 1.9E-27 T 10-10-2018 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 PIRSF PIRSF002599 1 70 1.9E-22 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 10-10-2018 IPR019844 Cold-shock conserved site AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 SMART SM00357 6 69 3.0E-28 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 AMQ28_02260 6a41fc5719169d0cbafffba088315fdb 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 5.8E-28 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Gene3D G3DSA:3.10.580.10 131 258 4.5E-40 T 10-10-2018 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SMART SM00116 205 253 3.2 T 10-10-2018 IPR000644 CBS domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SMART SM00116 141 194 1.5 T 10-10-2018 IPR000644 CBS domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Gene3D G3DSA:1.10.357.20 274 449 1.9E-51 T 10-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SUPERFAMILY SSF54631 133 265 1.25E-29 T 10-10-2018 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Pfam PF00571 CBS domain 134 192 2.4E-7 T 10-10-2018 IPR000644 CBS domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Pfam PF00571 CBS domain 199 250 1.5E-5 T 10-10-2018 IPR000644 CBS domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Gene3D G3DSA:1.25.60.10 6 129 4.2E-18 T 10-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Pfam PF01769 Divalent cation transporter 322 441 2.1E-24 T 10-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SMART SM00924 33 134 9.3E-20 T 10-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 Pfam PF03448 MgtE intracellular N domain 35 131 1.9E-18 T 10-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 TIGRFAM TIGR00400 mgtE: magnesium transporter 14 449 2.1E-101 T 10-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SUPERFAMILY SSF158791 10 129 2.22E-21 T 10-10-2018 AMQ28_03650 1946b6815a5e3c37a23719e9ba2a5e5f 453 SUPERFAMILY SSF161093 280 448 1.96E-45 T 10-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AMQ28_13550 614b7018307762dbdecf8ce11bb36923 457 Pfam PF07690 Major Facilitator Superfamily 30 359 7.3E-26 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_13550 614b7018307762dbdecf8ce11bb36923 457 Gene3D G3DSA:1.20.1250.20 10 424 3.4E-72 T 10-10-2018 AMQ28_13550 614b7018307762dbdecf8ce11bb36923 457 SUPERFAMILY SSF103473 19 430 4.32E-56 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_05975 4d79b833799976f895b4822b200dad53 385 Gene3D G3DSA:3.90.1510.10 44 279 3.6E-134 T 10-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 AMQ28_05975 4d79b833799976f895b4822b200dad53 385 SUPERFAMILY SSF110738 4 372 4.97E-128 T 10-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 AMQ28_05975 4d79b833799976f895b4822b200dad53 385 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 5 371 1.6E-144 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMQ28_05975 4d79b833799976f895b4822b200dad53 385 Gene3D G3DSA:3.40.50.10350 4 365 3.6E-134 T 10-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold AMQ28_05975 4d79b833799976f895b4822b200dad53 385 Pfam PF02595 Glycerate kinase family 6 372 3.1E-137 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMQ28_05975 4d79b833799976f895b4822b200dad53 385 PIRSF PIRSF006078 3 381 3.8E-130 T 10-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Gene3D G3DSA:1.20.140.10 252 405 1.2E-39 T 10-10-2018 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 356 375 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 SUPERFAMILY SSF47203 250 399 7.89E-41 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 142 238 6.6E-21 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Gene3D G3DSA:2.40.110.10 141 250 2.4E-37 T 10-10-2018 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 26 138 1.3E-33 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 SUPERFAMILY SSF56645 13 249 2.36E-77 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Gene3D G3DSA:1.10.540.10 8 140 8.6E-42 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_03445 5707ca378d95233f7e479d45a4c365d0 405 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 396 4.1E-27 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 SUPERFAMILY SSF50891 21 182 4.09E-59 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 Gene3D G3DSA:2.40.100.10 20 184 2.9E-62 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 PIRSF PIRSF001467 9 186 9.0E-31 T 10-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 38 53 1.6E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 1.6E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 1.6E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 - T 10-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMQ28_07970 616a9b0d7058d5b328f5476e83d5abb3 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 25 181 2.6E-49 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_06450 9fe74c022d6f34ba71dfe9853957a554 112 Gene3D G3DSA:1.10.1660.10 21 110 5.9E-20 T 10-10-2018 AMQ28_06450 9fe74c022d6f34ba71dfe9853957a554 112 Pfam PF13591 MerR HTH family regulatory protein 27 106 6.9E-15 T 10-10-2018 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 10-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 SUPERFAMILY SSF54631 93 202 1.19E-26 T 10-10-2018 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 PIRSF PIRSF000130 1 488 9.9E-202 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 SUPERFAMILY SSF51412 2 478 2.09E-126 T 10-10-2018 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 Pfam PF00571 CBS domain 89 137 6.9E-11 T 10-10-2018 IPR000644 CBS domain AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 Pfam PF00571 CBS domain 157 203 0.0016 T 10-10-2018 IPR000644 CBS domain AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 SMART SM00116 96 143 3.0E-9 T 10-10-2018 IPR000644 CBS domain AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 SMART SM00116 157 205 1.4E-5 T 10-10-2018 IPR000644 CBS domain AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 SMART SM01240 7 474 0.0 T 10-10-2018 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 Gene3D G3DSA:3.20.20.70 2 487 1.4E-207 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 487 82.381 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 2.9E-186 T 10-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMQ28_08675 ad1e3f7c4cea28c13ac7d5347decbdc0 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 474 2.2E-159 T 10-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMQ28_09725 1c289618b484cb16c000d46a352028a3 209 Pfam PF05137 Fimbrial assembly protein (PilN) 100 186 1.4E-15 T 10-10-2018 IPR007813 Fimbrial assembly PilN AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Gene3D G3DSA:3.30.160.40 219 303 8.2E-27 T 10-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 10-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 3.0E-112 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 2.9E-78 T 10-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Gene3D G3DSA:3.40.190.10 101 200 2.4E-83 T 10-10-2018 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.9E-49 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.9E-49 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.9E-49 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.9E-49 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.9E-49 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 293 2.0E-20 T 10-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Gene3D G3DSA:3.40.190.10 4 208 2.4E-83 T 10-10-2018 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 PIRSF PIRSF001438 1 305 5.1E-118 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 SUPERFAMILY SSF54782 219 304 1.31E-25 T 10-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 SUPERFAMILY SSF53850 2 215 3.04E-82 T 10-10-2018 AMQ28_09310 da06a86655c2db4de0395824ed05f0c0 305 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 38.235 T 10-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 2.8E-15 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.6E-57 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 3.6E-224 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Gene3D G3DSA:2.40.30.10 340 395 2.4E-28 T 10-10-2018 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.103 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 SUPERFAMILY SSF50447 207 303 6.48E-30 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Gene3D G3DSA:2.40.30.10 208 336 5.0E-53 T 10-10-2018 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Gene3D G3DSA:3.40.50.300 1 205 2.4E-68 T 10-10-2018 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Pfam PF03143 Elongation factor Tu C-terminal domain 301 394 4.9E-34 T 10-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 3.5E-18 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 SUPERFAMILY SSF52540 6 221 9.26E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 SUPERFAMILY SSF50465 301 394 2.01E-36 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11440 f9699be45bfab8de203ccb61ae62d2b3 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_12160 29eb85d444dfd5070659f48e218b2b03 87 SUPERFAMILY SSF54862 4 76 1.33E-18 T 10-10-2018 AMQ28_12160 29eb85d444dfd5070659f48e218b2b03 87 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_12160 29eb85d444dfd5070659f48e218b2b03 87 Gene3D G3DSA:3.30.70.20 2 81 9.0E-32 T 10-10-2018 AMQ28_12160 29eb85d444dfd5070659f48e218b2b03 87 Pfam PF00037 4Fe-4S binding domain 5 24 1.9E-6 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 30 388 75.739 T 10-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 Gene3D G3DSA:3.20.20.70 92 373 2.4E-108 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 Gene3D G3DSA:1.10.150.530 12 91 1.3E-25 T 10-10-2018 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 PIRSF PIRSF006004 23 402 1.1E-147 T 10-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 SMART SM00729 135 360 0.0037 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 29 393 3.3E-143 T 10-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 Pfam PF04055 Radical SAM superfamily 140 317 7.5E-18 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_05775 30d9b7373428b42751891cb8e8ef47b8 411 SUPERFAMILY SSF102114 135 356 4.97E-17 T 10-10-2018 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 165 1.0E-19 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 51.02 T 10-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 SUPERFAMILY SSF50447 262 393 1.89E-26 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 2.9E-47 T 10-10-2018 IPR032090 Peptide chain release factor 3, C-terminal AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 SUPERFAMILY SSF54980 393 468 2.05E-17 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 SUPERFAMILY SSF52540 10 277 5.6E-83 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Gene3D G3DSA:3.40.50.300 110 275 3.9E-110 T 10-10-2018 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Gene3D G3DSA:3.30.70.3280 390 529 5.9E-53 T 10-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Pfam PF00009 Elongation factor Tu GTP binding domain 14 277 2.8E-48 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 Gene3D G3DSA:3.40.50.300 72 379 3.9E-110 T 10-10-2018 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.0E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 2.0E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.0E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.0E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 2.0E-12 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_05360 6986678c7cfdcf5a241810f712bdb820 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 1.5E-260 T 10-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 Gene3D G3DSA:3.20.20.70 4 370 6.7E-123 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 SUPERFAMILY SSF51971 335 519 3.3E-41 T 10-10-2018 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 378 400 5.0E-5 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 496 520 5.0E-5 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 SUPERFAMILY SSF51395 2 364 1.02E-109 T 10-10-2018 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 638 5.5E-24 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 SUPERFAMILY SSF51905 471 631 1.22E-12 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 1.2E-74 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 Gene3D G3DSA:3.50.50.60 473 629 1.8E-106 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 Gene3D G3DSA:3.40.50.720 377 670 1.8E-106 T 10-10-2018 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 379 398 3.2E-12 T 10-10-2018 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 518 3.2E-12 T 10-10-2018 AMQ28_12675 a3ac7867f850fa89d6cc91a91b13f741 677 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 461 479 3.2E-12 T 10-10-2018 AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 Gene3D G3DSA:3.30.70.250 121 190 2.5E-66 T 10-10-2018 AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 4 300 5.7E-99 T 10-10-2018 IPR017554 Malonate decarboxylase, McdH subunit AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 Gene3D G3DSA:3.40.366.10 5 279 2.5E-66 T 10-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 SUPERFAMILY SSF55048 122 189 4.32E-12 T 10-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 PIRSF PIRSF000446 1 301 1.7E-59 T 10-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 Pfam PF00698 Acyl transferase domain 4 284 2.0E-23 T 10-10-2018 IPR014043 Acyl transferase AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 306 1.7E-17 T 10-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMQ28_00765 0a7b3074e2e1bd4244a3463b99e40dc0 307 SUPERFAMILY SSF52151 3 290 8.63E-48 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 SUPERFAMILY SSF47144 77 161 6.28E-19 T 10-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 SUPERFAMILY SSF46565 1 68 1.44E-13 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 Pfam PF00226 DnaJ domain 3 65 7.6E-9 T 10-10-2018 IPR001623 DnaJ domain AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 82 152 1.2E-14 T 10-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 160 16.776 T 10-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 Gene3D G3DSA:1.10.287.110 1 74 1.5E-18 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 Gene3D G3DSA:1.20.1280.20 77 161 1.1E-18 T 10-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 SMART SM00271 1 61 2.3E-8 T 10-10-2018 IPR001623 DnaJ domain AMQ28_14065 f9e4534eae7b7753407386abcce4fb11 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 15 158 4.8E-28 T 10-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 2.5E-93 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 8.2E-90 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 Gene3D G3DSA:3.20.20.70 1 345 1.1E-150 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 SUPERFAMILY SSF51569 3 328 4.54E-104 T 10-10-2018 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 344 2.1E-190 T 10-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AMQ28_13955 510ee7cf15225b5658a776ff5f8b7948 345 PIRSF PIRSF001359 1 329 1.3E-79 T 10-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 Gene3D G3DSA:3.40.190.10 182 275 1.7E-34 T 10-10-2018 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 Gene3D G3DSA:1.10.10.10 12 100 7.2E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00405 bf273181addd9406afb1198d60b31872 305 SUPERFAMILY SSF53850 109 302 2.17E-23 T 10-10-2018 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 SUPERFAMILY SSF46785 16 95 1.47E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00405 bf273181addd9406afb1198d60b31872 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 4.9E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 Pfam PF03466 LysR substrate binding domain 109 289 2.5E-7 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_00405 bf273181addd9406afb1198d60b31872 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 79 1.4E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00405 bf273181addd9406afb1198d60b31872 305 Gene3D G3DSA:3.40.190.10 107 298 1.7E-34 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 Gene3D G3DSA:3.40.50.261 126 291 2.3E-73 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 Pfam PF00549 CoA-ligase 153 268 4.2E-19 T 10-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 PIRSF PIRSF001553 1 293 2.0E-131 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 154 183 - T 10-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 2.3E-38 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 2.3E-38 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 2.3E-38 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.3E-38 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 290 42.935 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 SMART SM00881 4 100 1.4E-36 T 10-10-2018 IPR003781 CoA-binding GO:0048037 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 SUPERFAMILY SSF52210 125 290 2.22E-55 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 SUPERFAMILY SSF51735 1 124 1.28E-39 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 238 251 - T 10-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 Pfam PF02629 CoA binding domain 6 99 4.8E-30 T 10-10-2018 IPR003781 CoA-binding GO:0048037 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 Gene3D G3DSA:3.40.50.720 1 125 5.7E-49 T 10-10-2018 AMQ28_12270 d786fe11daa09476388db8d8df932a6e 296 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 290 3.7E-138 T 10-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_11375 34a1a94ad363816276fa956274d8d256 221 Gene3D G3DSA:3.30.2350.10 7 220 8.4E-66 T 10-10-2018 AMQ28_11375 34a1a94ad363816276fa956274d8d256 221 SUPERFAMILY SSF55120 12 220 1.17E-57 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_11375 34a1a94ad363816276fa956274d8d256 221 Pfam PF00849 RNA pseudouridylate synthase 24 171 1.7E-29 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12700 219dc28d21c46289a2c4979d3ddc8cee 230 Gene3D G3DSA:2.60.120.10 9 228 1.2E-75 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_12700 219dc28d21c46289a2c4979d3ddc8cee 230 PIRSF PIRSF006232 2 225 3.7E-43 T 10-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMQ28_12700 219dc28d21c46289a2c4979d3ddc8cee 230 Pfam PF02678 Pirin 11 119 5.0E-30 T 10-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMQ28_12700 219dc28d21c46289a2c4979d3ddc8cee 230 Gene3D G3DSA:2.60.120.10 12 135 1.2E-75 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_12700 219dc28d21c46289a2c4979d3ddc8cee 230 SUPERFAMILY SSF51182 5 227 5.77E-59 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 16 492 37.335 T 10-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 SUPERFAMILY SSF55931 18 309 1.05E-114 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 Gene3D G3DSA:1.10.150.380 310 430 3.8E-33 T 10-10-2018 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 17 491 7.4E-165 T 10-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 SUPERFAMILY SSF89095 310 417 1.29E-30 T 10-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 Pfam PF02934 GatB/GatE catalytic domain 19 302 1.2E-107 T 10-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 Gene3D G3DSA:1.10.10.410 432 492 2.0E-24 T 10-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 158 172 - T 10-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 Pfam PF02637 GatB domain 347 491 1.3E-49 T 10-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMQ28_11685 e8d00369735fddbc93365d9929705a42 492 SMART SM00845 341 491 9.5E-76 T 10-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMQ28_11790 e34199a204437626266203a2433dae3a 397 SUPERFAMILY SSF54506 2 182 1.02E-70 T 10-10-2018 AMQ28_11790 e34199a204437626266203a2433dae3a 397 SUPERFAMILY SSF54506 190 393 5.02E-75 T 10-10-2018 AMQ28_11790 e34199a204437626266203a2433dae3a 397 Gene3D G3DSA:3.10.310.10 11 388 1.6E-148 T 10-10-2018 AMQ28_11790 e34199a204437626266203a2433dae3a 397 Gene3D G3DSA:3.10.310.10 181 374 1.6E-148 T 10-10-2018 AMQ28_11790 e34199a204437626266203a2433dae3a 397 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 393 3.5E-224 T 10-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 AMQ28_11790 e34199a204437626266203a2433dae3a 397 Pfam PF04303 PrpF protein 6 391 3.4E-173 T 10-10-2018 IPR007400 PrpF protein AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:3.30.65.10 760 822 1.2E-20 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:3.30.65.10 714 759 1.3E-6 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:3.30.65.10 598 664 1.5E-5 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:1.10.460.10 186 590 4.6E-155 T 10-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Hamap MF_00952 DNA topoisomerase 1 [topA]. 23 749 54.539 T 10-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SUPERFAMILY SSF57783 759 822 8.33E-15 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SUPERFAMILY SSF57783 824 878 8.84E-17 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SUPERFAMILY SSF57783 600 639 3.74E-9 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 329 343 - T 10-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF01751 Toprim domain 25 163 8.3E-32 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SMART SM00437 292 546 6.5E-118 T 10-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SUPERFAMILY SSF57783 716 756 1.24E-6 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SMART SM00436 154 242 1.5E-49 T 10-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 212 230 8.4E-37 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 410 426 8.4E-37 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 127 140 8.4E-37 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 509 523 8.4E-37 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 334 343 8.4E-37 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF01131 DNA topoisomerase 179 584 2.6E-125 T 10-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:2.20.25.10 823 879 9.8E-22 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:2.70.20.10 234 492 4.6E-155 T 10-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 614 639 4.0E-6 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 728 759 6.8E-6 T 10-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 25 649 1.6E-241 T 10-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SUPERFAMILY SSF56712 24 626 7.32E-198 T 10-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 SMART SM00493 23 153 1.1E-29 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:3.40.50.140 21 184 1.1E-65 T 10-10-2018 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 839 878 1.2E-16 T 10-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 773 808 2.3E-11 T 10-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMQ28_05990 0a0cca7e38a138823af28419cd1084dd 879 Gene3D G3DSA:1.10.290.10 300 424 4.6E-155 T 10-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 362 7.6E-32 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Gene3D G3DSA:3.40.120.10 175 359 2.6E-65 T 10-10-2018 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 137 1.5E-41 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 45.746 T 10-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 SUPERFAMILY SSF53738 2 181 9.03E-48 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 439 2.7E-182 T 10-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 SUPERFAMILY SSF53738 156 256 1.14E-32 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 1.1E-19 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 2.0E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 2.0E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 2.0E-14 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Gene3D G3DSA:3.30.310.50 367 443 6.6E-21 T 10-10-2018 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Gene3D G3DSA:3.40.120.10 1 154 2.0E-46 T 10-10-2018 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 439 6.1E-15 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 SUPERFAMILY SSF55957 355 441 9.68E-22 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 SUPERFAMILY SSF53738 258 363 1.35E-27 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_08680 3a66a88428bac11c57bad49abf00373d 443 Gene3D G3DSA:3.40.120.10 257 336 2.6E-65 T 10-10-2018 AMQ28_12980 0709085d5f02cfa85e7b46189c6dde95 745 PIRSF PIRSF009407 1 744 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMQ28_12980 0709085d5f02cfa85e7b46189c6dde95 745 SUPERFAMILY SSF53659 5 742 0.0 T 10-10-2018 AMQ28_12980 0709085d5f02cfa85e7b46189c6dde95 745 Gene3D G3DSA:3.40.718.10 407 664 8.1E-7 T 10-10-2018 AMQ28_12980 0709085d5f02cfa85e7b46189c6dde95 745 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 2 744 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMQ28_12980 0709085d5f02cfa85e7b46189c6dde95 745 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 10-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 5.0E-72 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 873 9.2E-36 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 1.2E-65 T 10-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:3.40.50.1380 945 1075 4.3E-37 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SMART SM01096 424 547 1.6E-72 T 10-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:1.10.1030.10 404 553 1.9E-47 T 10-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF56059 128 401 1.33E-109 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF56059 673 933 2.83E-103 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SMART SM00851 961 1047 5.2E-33 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:3.30.470.20 119 403 2.2E-129 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF52440 558 675 2.01E-49 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 3 1059 0.0 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.458 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF52335 947 1073 9.29E-41 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:3.40.50.20 554 662 1.3E-48 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.097 T 10-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF52440 2 127 1.73E-50 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:3.40.50.20 1 116 1.9E-50 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Pfam PF02142 MGS-like domain 963 1047 2.9E-20 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 SUPERFAMILY SSF48108 396 554 1.12E-53 T 10-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Gene3D G3DSA:3.30.470.20 665 935 3.5E-119 T 10-10-2018 AMQ28_03745 b49281f5f029e7d37103649de339d800 1076 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 8.7E-39 T 10-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 SUPERFAMILY SSF54211 78 157 7.33E-26 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 ProSitePatterns PS00585 Ribosomal protein S5 signature. 27 59 - T 10-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 162 33.781 T 10-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 1.1E-28 T 10-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 74 2.2E-27 T 10-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 SUPERFAMILY SSF54768 7 75 1.04E-22 T 10-10-2018 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 Gene3D G3DSA:3.30.160.20 1 72 4.6E-29 T 10-10-2018 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 161 7.7E-64 T 10-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMQ28_10270 2171fa5ddaaf69a3a190343126c6e8fc 165 Gene3D G3DSA:3.30.230.10 73 165 6.4E-35 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 495 519 - T 10-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 206 6.4E-37 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Gene3D G3DSA:1.10.1040.50 499 711 9.3E-77 T 10-10-2018 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 SUPERFAMILY SSF48179 626 716 4.76E-24 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 716 0.0 T 10-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 1.8E-61 T 10-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 SUPERFAMILY SSF52096 6 308 1.66E-66 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Gene3D G3DSA:3.90.226.10 1 314 4.8E-96 T 10-10-2018 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 SUPERFAMILY SSF48179 497 642 1.79E-29 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Gene3D G3DSA:3.40.50.720 315 498 1.4E-67 T 10-10-2018 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 498 593 1.6E-22 T 10-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 SUPERFAMILY SSF51735 314 497 1.39E-56 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_09270 ad635277cab51ee8b08b251d5745a99d 717 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 410 1.2E-204 T 10-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 SMART SM01086 316 410 1.6E-31 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 SMART SM00382 111 332 3.3E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 SUPERFAMILY SSF57716 9 44 1.71E-10 T 10-10-2018 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Gene3D G3DSA:3.40.50.300 53 314 7.9E-111 T 10-10-2018 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Gene3D G3DSA:1.10.8.60 315 422 3.4E-36 T 10-10-2018 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.3E-51 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 391 9.9E-15 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 SMART SM00994 8 47 1.4E-19 T 10-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 SUPERFAMILY SSF52540 59 400 2.46E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Gene3D G3DSA:3.30.50.30 2 47 9.4E-17 T 10-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 414 52.18 T 10-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMQ28_05520 1e0dc5aaff09e50a10f15c540e5b7769 436 Pfam PF06689 ClpX C4-type zinc finger 9 45 1.8E-17 T 10-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMQ28_05900 bf75c38e4da9bb46b50d707730355d15 174 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 37.173 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMQ28_05900 bf75c38e4da9bb46b50d707730355d15 174 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 1.2E-63 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMQ28_05900 bf75c38e4da9bb46b50d707730355d15 174 Gene3D G3DSA:3.30.1060.10 1 160 8.0E-71 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMQ28_05900 bf75c38e4da9bb46b50d707730355d15 174 SUPERFAMILY SSF55068 1 163 9.16E-72 T 10-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMQ28_05900 bf75c38e4da9bb46b50d707730355d15 174 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 3 152 8.4E-60 T 10-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 SUPERFAMILY SSF51246 328 398 1.05E-16 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 15 398 1.3E-166 T 10-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 Gene3D G3DSA:3.40.50.20 3 124 9.3E-49 T 10-10-2018 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 9 399 49.944 T 10-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 Gene3D G3DSA:3.30.470.20 199 401 1.6E-58 T 10-10-2018 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 Pfam PF02222 ATP-grasp domain 125 303 7.1E-50 T 10-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 SUPERFAMILY SSF56059 115 322 3.89E-54 T 10-10-2018 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 Gene3D G3DSA:3.30.1490.20 125 198 1.2E-31 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_13355 8dddb31578f39576764ffdf75b913316 401 SUPERFAMILY SSF52440 4 114 1.44E-28 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_10430 0f1fe6247e8bea25b772c8d8c33aa388 191 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 190 3.6E-85 T 10-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 AMQ28_10430 0f1fe6247e8bea25b772c8d8c33aa388 191 Gene3D G3DSA:3.40.50.2020 3 188 2.5E-52 T 10-10-2018 AMQ28_10430 0f1fe6247e8bea25b772c8d8c33aa388 191 SUPERFAMILY SSF53271 4 185 8.47E-44 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_10430 0f1fe6247e8bea25b772c8d8c33aa388 191 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 42.001 T 10-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 AMQ28_06350 97845d53ec80960c70805ea21964e778 222 Pfam PF02390 Putative methyltransferase 23 155 1.8E-20 T 10-10-2018 AMQ28_06350 97845d53ec80960c70805ea21964e778 222 SUPERFAMILY SSF53335 18 153 1.63E-9 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_06350 97845d53ec80960c70805ea21964e778 222 Gene3D G3DSA:3.40.50.150 3 195 7.6E-26 T 10-10-2018 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 Gene3D G3DSA:1.10.10.10 1 93 1.6E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 Gene3D G3DSA:3.40.190.10 94 290 1.0E-45 T 10-10-2018 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.0E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 SUPERFAMILY SSF53850 87 294 1.71E-29 T 10-10-2018 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 Gene3D G3DSA:3.40.190.10 165 271 1.0E-45 T 10-10-2018 AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 Pfam PF03466 LysR substrate binding domain 87 292 1.7E-34 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_11660 3617a5f468c2ecfef9160adc3411205b 303 SUPERFAMILY SSF46785 1 87 2.5E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_10250 9c43bf55039c1d755094cfd32b0fe1c9 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.717 T 10-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AMQ28_10250 9c43bf55039c1d755094cfd32b0fe1c9 101 Gene3D G3DSA:4.10.830.10 42 101 3.4E-22 T 10-10-2018 AMQ28_10250 9c43bf55039c1d755094cfd32b0fe1c9 101 SUPERFAMILY SSF57716 2 101 3.07E-38 T 10-10-2018 AMQ28_10250 9c43bf55039c1d755094cfd32b0fe1c9 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 6.8E-26 T 10-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10250 9c43bf55039c1d755094cfd32b0fe1c9 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 10-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_01400 e06dd6efd1e9ea5822f2ad5c48ab1858 292 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 17.125 T 10-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMQ28_01400 e06dd6efd1e9ea5822f2ad5c48ab1858 292 Pfam PF01040 UbiA prenyltransferase family 19 267 8.7E-56 T 10-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMQ28_01400 e06dd6efd1e9ea5822f2ad5c48ab1858 292 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 277 8.2E-84 T 10-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMQ28_01400 e06dd6efd1e9ea5822f2ad5c48ab1858 292 Gene3D G3DSA:1.10.357.140 13 164 4.6E-21 T 10-10-2018 AMQ28_01400 e06dd6efd1e9ea5822f2ad5c48ab1858 292 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 10-10-2018 IPR030470 UbiA prenyltransferase conserved site AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 2.5E-17 T 10-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 SUPERFAMILY SSF55129 1 58 2.22E-20 T 10-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 2.8E-20 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 PIRSF PIRSF002211 1 58 9.4E-25 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.318 T 10-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10275 f56ec03c1bec2268becb5bf8d196186e 58 Gene3D G3DSA:3.30.1390.20 1 58 2.4E-23 T 10-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMQ28_02915 d2d2253bf73f84b80666160246f31250 241 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 5 238 1.8E-95 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMQ28_02915 d2d2253bf73f84b80666160246f31250 241 SUPERFAMILY SSF63892 3 239 5.89E-99 T 10-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMQ28_02915 d2d2253bf73f84b80666160246f31250 241 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 241 127.41 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMQ28_02915 d2d2253bf73f84b80666160246f31250 241 Gene3D G3DSA:3.20.20.70 1 241 3.1E-105 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02915 d2d2253bf73f84b80666160246f31250 241 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 5 237 1.0E-102 T 10-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 SUPERFAMILY SSF53474 54 325 2.84E-45 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 Gene3D G3DSA:3.40.50.1820 37 332 1.3E-74 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 Pfam PF00561 alpha/beta hydrolase fold 77 311 1.3E-21 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 PRINTS PR00111 Alpha/beta hydrolase fold signature 162 175 1.8E-11 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 117 1.8E-11 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 1.8E-11 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03880 83baa09a4e76f7149d86bcda26bb1a60 342 PRINTS PR00111 Alpha/beta hydrolase fold signature 269 283 1.8E-11 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 SUPERFAMILY SSF50249 3 123 6.34E-51 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 7.3E-42 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.21 T 10-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PIRSF PIRSF002133 1 124 5.0E-53 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.4E-59 T 10-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.7E-68 T 10-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11425 7c7b3416756e0725e721ae3cbe5099a9 124 Gene3D G3DSA:2.40.50.140 1 124 3.3E-62 T 10-10-2018 AMQ28_03630 7eca3fb995b82eb84a11fbf754931f4d 288 Gene3D G3DSA:1.10.530.10 41 217 4.9E-49 T 10-10-2018 AMQ28_03630 7eca3fb995b82eb84a11fbf754931f4d 288 SUPERFAMILY SSF53955 85 212 5.04E-48 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_03630 7eca3fb995b82eb84a11fbf754931f4d 288 Pfam PF01464 Transglycosylase SLT domain 94 199 2.8E-30 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 AMQ28_07320 444c08aa69d208e6b64c8231d9529122 248 SUPERFAMILY SSF52540 87 239 3.2E-14 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07320 444c08aa69d208e6b64c8231d9529122 248 Gene3D G3DSA:3.40.50.300 54 234 3.3E-38 T 10-10-2018 AMQ28_07320 444c08aa69d208e6b64c8231d9529122 248 Pfam PF01695 IstB-like ATP binding protein 95 219 1.1E-15 T 10-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Gene3D G3DSA:2.120.10.90 533 668 9.9E-40 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Gene3D G3DSA:2.120.10.90 689 952 1.9E-65 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Gene3D G3DSA:3.90.199.10 31 524 5.4E-219 T 10-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Gene3D G3DSA:1.10.268.10 368 496 5.4E-219 T 10-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 856 901 6.9E-13 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 780 813 1.1E-9 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 732 775 7.4E-8 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 906 951 2.3E-11 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 640 7.4E-9 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 541 588 2.3E-10 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 SUPERFAMILY SSF101904 536 644 1.19E-34 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 SMART SM00434 9 502 1.1E-266 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 6 653 5.0E-284 T 10-10-2018 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 SUPERFAMILY SSF56719 28 525 1.83E-173 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Gene3D G3DSA:3.30.1360.40 234 331 5.4E-219 T 10-10-2018 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 509 1.8E-152 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 SUPERFAMILY SSF101904 726 967 1.44E-57 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_03290 ab8dceb7083ad707fecadbf3167f8ce0 1002 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 953 23.184 T 10-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_11965 ab86688ffe90f451517fa7a3e1338df4 103 SUPERFAMILY SSF141091 1 101 1.96E-38 T 10-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11965 ab86688ffe90f451517fa7a3e1338df4 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.024 T 10-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11965 ab86688ffe90f451517fa7a3e1338df4 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 10-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11965 ab86688ffe90f451517fa7a3e1338df4 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.0E-41 T 10-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11965 ab86688ffe90f451517fa7a3e1338df4 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 6.0E-40 T 10-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 Gene3D G3DSA:3.40.50.720 24 219 8.5E-53 T 10-10-2018 AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 358 2.4E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 297 308 2.4E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 370 389 2.4E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 Gene3D G3DSA:3.40.50.720 221 462 6.2E-59 T 10-10-2018 AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 232 456 3.3E-44 T 10-10-2018 AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 357 385 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 SUPERFAMILY SSF51735 222 457 3.3E-54 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 423 443 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 244 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 390 407 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 297 308 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 370 389 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 344 360 1.6E-31 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01505 4784d825db2bc0660d42a47be8ff59f6 463 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 226 400 1.2E-4 T 10-10-2018 AMQ28_05505 e0c60daddff0ffe1f6cfad9efc13fe63 261 Pfam PF00665 Integrase core domain 98 213 4.0E-29 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_05505 e0c60daddff0ffe1f6cfad9efc13fe63 261 Pfam PF13276 HTH-like domain 21 72 4.6E-16 T 10-10-2018 IPR025948 HTH-like domain AMQ28_05505 e0c60daddff0ffe1f6cfad9efc13fe63 261 SUPERFAMILY SSF53098 93 252 1.27E-35 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05505 e0c60daddff0ffe1f6cfad9efc13fe63 261 Gene3D G3DSA:3.30.420.10 95 247 6.8E-15 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 128 2.2E-65 T 10-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 Gene3D G3DSA:3.10.180.10 1 132 2.8E-49 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 3.5E-22 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 10-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMQ28_02680 72a77c6fbfb2c058e0dc06740b2494da 133 SUPERFAMILY SSF54593 1 127 2.55E-35 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 280 1.0E-137 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 Gene3D G3DSA:3.30.572.10 1 280 4.1E-129 T 10-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 Hamap MF_00008 Thymidylate synthase [thyA]. 1 280 39.24 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 SUPERFAMILY SSF55831 1 280 1.31E-126 T 10-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 PRINTS PR00108 Thymidylate synthase family signature 213 230 3.7E-47 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 PRINTS PR00108 Thymidylate synthase family signature 131 150 3.7E-47 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 PRINTS PR00108 Thymidylate synthase family signature 157 172 3.7E-47 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.7E-47 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 PRINTS PR00108 Thymidylate synthase family signature 175 201 3.7E-47 T 10-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 ProSitePatterns PS00091 Thymidylate synthase active site. 142 170 - T 10-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_05880 9b9cba7b7b1dc53772f8007ced6290dd 280 Pfam PF00303 Thymidylate synthase 2 280 8.3E-117 T 10-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Gene3D G3DSA:3.30.56.50 2 51 2.0E-6 T 10-10-2018 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Gene3D G3DSA:2.40.30.10 808 905 1.1E-27 T 10-10-2018 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 SUPERFAMILY SSF52156 684 813 1.27E-33 T 10-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 409 565 4.4E-32 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Pfam PF11987 Translation-initiation factor 2 691 796 3.4E-34 T 10-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 SUPERFAMILY SSF52540 401 571 9.14E-53 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 98 5.2E-14 T 10-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Pfam PF00009 Elongation factor Tu GTP binding domain 410 566 4.5E-35 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 ProSitePatterns PS01176 Initiation factor 2 signature. 857 879 - T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 325 906 3.8E-244 T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Gene3D G3DSA:2.40.30.10 578 696 4.3E-40 T 10-10-2018 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 SUPERFAMILY SSF46955 3 51 6.77E-8 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 SUPERFAMILY SSF50447 580 662 7.51E-24 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 330 379 8.2E-11 T 10-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Gene3D G3DSA:3.40.50.10050 701 807 1.1E-34 T 10-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 SUPERFAMILY SSF50447 808 904 9.98E-28 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Gene3D G3DSA:3.40.50.300 404 577 5.7E-70 T 10-10-2018 AMQ28_06575 f120d34b4246e70eb44e3e52450f6beb 906 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 904 16.613 T 10-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 45 172 2.3E-40 T 10-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 13 595 68.575 T 10-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 134 155 - T 10-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 207 595 40.624 T 10-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Gene3D G3DSA:3.30.460.80 7 153 5.9E-35 T 10-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 SUPERFAMILY SSF56762 221 595 2.22E-119 T 10-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 46 173 2.0E-40 T 10-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Gene3D G3DSA:1.10.645.20 210 595 1.1E-141 T 10-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 325 595 2.9E-98 T 10-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 101 155 2.0E-24 T 10-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 248 259 - T 10-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 SUPERFAMILY SSF143243 22 225 6.15E-58 T 10-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 22 181 25.101 T 10-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04555 735136689d0456b57d907b7bdd64a8d8 595 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 211 595 2.9E-161 T 10-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Gene3D G3DSA:3.30.565.10 1 215 6.6E-74 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 SUPERFAMILY SSF55874 3 214 1.44E-63 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 SUPERFAMILY SSF56719 388 617 1.05E-73 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 620 2.0E-287 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 554 616 2.1E-21 T 10-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 SUPERFAMILY SSF54211 217 382 1.65E-43 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Gene3D G3DSA:3.30.230.10 216 388 1.7E-52 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 10-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Pfam PF00204 DNA gyrase B 218 385 5.1E-40 T 10-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 SMART SM00387 26 173 7.4E-24 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 580 594 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 4.8E-94 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 558 574 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 30 45 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 108 122 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 65 78 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 266 279 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.7E-59 T 10-10-2018 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Pfam PF01751 Toprim domain 413 512 2.6E-12 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Gene3D G3DSA:3.40.50.670 389 619 1.3E-87 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 SMART SM00433 33 620 2.6E-201 T 10-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 624 45.992 T 10-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08515 5cd122abf7c3f922fb04c9499e6ae5b1 626 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 171 1.9E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_09180 655c115fd63cfdd130de07e754b441d2 208 Gene3D G3DSA:3.30.420.10 17 200 6.4E-38 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09180 655c115fd63cfdd130de07e754b441d2 208 SUPERFAMILY SSF53098 9 198 2.91E-39 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09180 655c115fd63cfdd130de07e754b441d2 208 SMART SM00474 30 201 6.5E-10 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_09180 655c115fd63cfdd130de07e754b441d2 208 Pfam PF01612 3'-5' exonuclease 32 198 3.3E-22 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 SUPERFAMILY SSF53901 266 389 4.01E-43 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 10-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 10-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 SUPERFAMILY SSF53901 5 262 1.66E-72 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 PIRSF PIRSF000429 3 390 2.2E-123 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 ProSitePatterns PS00099 Thiolases active site. 371 384 - T 10-10-2018 IPR020610 Thiolase, active site GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 Pfam PF02803 Thiolase, C-terminal domain 265 389 5.4E-47 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 Gene3D G3DSA:3.40.47.10 138 384 8.2E-141 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 8 390 3.7E-189 T 10-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 Gene3D G3DSA:3.40.47.10 9 271 8.2E-141 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 6 390 61.301 T 10-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 Pfam PF00108 Thiolase, N-terminal domain 9 257 1.3E-72 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMQ28_09265 c5d7d9e8759f78e8a46952e19f9caf6a 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 388 4.4E-129 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Pfam PF01645 Conserved region in glutamate synthase 806 1167 7.7E-148 T 10-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 SUPERFAMILY SSF51395 460 1200 9.16E-247 T 10-10-2018 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Gene3D G3DSA:3.20.20.70 444 804 0.0 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Gene3D G3DSA:3.20.20.70 496 1182 0.0 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Pfam PF04898 Glutamate synthase central domain 470 749 4.4E-105 T 10-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Gene3D G3DSA:3.60.20.10 25 558 0.0 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 SUPERFAMILY SSF56235 25 443 1.45E-139 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 SUPERFAMILY SSF69336 1225 1478 5.23E-88 T 10-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Gene3D G3DSA:2.160.20.60 1222 1491 1.3E-98 T 10-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Pfam PF01493 GXGXG motif 1247 1435 8.7E-77 T 10-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMQ28_09760 9748c20965cb43355d225a2250a6e2b0 1493 Pfam PF00310 Glutamine amidotransferases class-II 25 439 1.7E-160 T 10-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 SMART SM00878 334 440 4.7E-62 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Gene3D G3DSA:3.30.470.20 87 430 1.3E-145 T 10-10-2018 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Gene3D G3DSA:3.30.1490.20 131 201 1.3E-145 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 SUPERFAMILY SSF56059 83 344 1.2E-66 T 10-10-2018 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 4.6E-207 T 10-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 SUPERFAMILY SSF51246 329 442 1.78E-41 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 SUPERFAMILY SSF52440 1 113 9.35E-48 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 320 2.0E-73 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.0E-44 T 10-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Gene3D G3DSA:3.40.50.20 1 85 1.2E-34 T 10-10-2018 AMQ28_01075 b83bdc12a638e674fcb6c94015ec1e49 455 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 1.2E-38 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_11785 d5ea5e4de5e91d8e56f4862ff021093d 451 Pfam PF00324 Amino acid permease 16 421 3.6E-111 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_11785 d5ea5e4de5e91d8e56f4862ff021093d 451 Gene3D G3DSA:1.20.1740.10 8 451 3.9E-63 T 10-10-2018 AMQ28_11785 d5ea5e4de5e91d8e56f4862ff021093d 451 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 10-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMQ28_11785 d5ea5e4de5e91d8e56f4862ff021093d 451 PIRSF PIRSF006060 2 451 8.7E-81 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_03850 2c978461d75d6e4051c1c771b2943895 224 SUPERFAMILY SSF53955 51 220 2.53E-59 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_03850 2c978461d75d6e4051c1c771b2943895 224 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 7 224 37.797 T 10-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_03850 2c978461d75d6e4051c1c771b2943895 224 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 10 223 2.7E-97 T 10-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_03850 2c978461d75d6e4051c1c771b2943895 224 Gene3D G3DSA:1.10.3810.10 47 223 2.7E-57 T 10-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_03850 2c978461d75d6e4051c1c771b2943895 224 Pfam PF00912 Transglycosylase 53 218 4.2E-55 T 10-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SUPERFAMILY SSF50447 271 411 7.29E-36 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SMART SM00838 610 698 2.2E-56 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Pfam PF14492 Elongation Factor G, domain II 411 485 1.6E-34 T 10-10-2018 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SMART SM00889 487 608 1.8E-62 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 5.4E-30 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SUPERFAMILY SSF54980 613 701 2.11E-29 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Gene3D G3DSA:3.40.50.300 1 298 1.2E-111 T 10-10-2018 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Gene3D G3DSA:3.30.70.240 614 685 1.0E-85 T 10-10-2018 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SUPERFAMILY SSF54211 489 609 3.54E-41 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Gene3D G3DSA:3.30.70.870 413 487 5.7E-33 T 10-10-2018 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Gene3D G3DSA:2.40.30.10 299 412 4.1E-44 T 10-10-2018 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 111.296 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SUPERFAMILY SSF52540 6 288 8.6E-105 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 SUPERFAMILY SSF54980 411 488 3.53E-25 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 702 0.0 T 10-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Pfam PF00679 Elongation factor G C-terminus 610 696 5.8E-31 T 10-10-2018 IPR000640 Elongation factor EFG, domain V-like AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Gene3D G3DSA:3.30.230.10 491 697 1.0E-85 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.0E-15 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.0E-15 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.0E-15 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 PRINTS PR00315 GTP-binding elongation factor signature 101 112 5.0E-15 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.0E-15 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.8E-18 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Pfam PF03764 Elongation factor G, domain IV 486 607 9.0E-41 T 10-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMQ28_11435 e4dc37f2d903024ad40503882470f484 712 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.5E-64 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_08320 851210c5bb7b740c9f4d94d1d5d2279a 134 Pfam PF11776 Nickel/cobalt transporter regulator 81 130 2.6E-15 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_08320 851210c5bb7b740c9f4d94d1d5d2279a 134 Gene3D G3DSA:3.10.450.160 67 133 9.1E-13 T 10-10-2018 AMQ28_08320 851210c5bb7b740c9f4d94d1d5d2279a 134 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 76 129 4.0E-19 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 2.8E-15 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.6E-57 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 SUPERFAMILY SSF50465 304 396 1.53E-36 T 10-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.174 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 3.4E-224 T 10-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 SUPERFAMILY SSF50447 207 303 6.48E-30 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Gene3D G3DSA:2.40.30.10 208 336 5.0E-53 T 10-10-2018 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Gene3D G3DSA:3.40.50.300 1 205 2.4E-68 T 10-10-2018 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Pfam PF03143 Elongation factor Tu C-terminal domain 301 394 4.9E-34 T 10-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 3.5E-18 T 10-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 SUPERFAMILY SSF52540 6 221 9.26E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 10-10-2018 IPR031157 Tr-type G domain, conserved site AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 Gene3D G3DSA:2.40.30.10 340 394 2.3E-28 T 10-10-2018 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_09390 b7e3161d3921568d823b607ab62226c3 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 6.1E-24 T 10-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMQ28_10115 25a2898f53b86fcd971f21b2392a66c8 210 Gene3D G3DSA:3.40.50.2020 67 210 1.2E-14 T 10-10-2018 AMQ28_10115 25a2898f53b86fcd971f21b2392a66c8 210 SUPERFAMILY SSF53271 53 206 5.67E-20 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_10115 25a2898f53b86fcd971f21b2392a66c8 210 Pfam PF00156 Phosphoribosyl transferase domain 116 206 3.7E-7 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMQ28_14140 2ebf14098add20f1c2380634f40a11a9 149 Pfam PF00583 Acetyltransferase (GNAT) family 39 132 1.0E-13 T 10-10-2018 IPR000182 GNAT domain AMQ28_14140 2ebf14098add20f1c2380634f40a11a9 149 Gene3D G3DSA:3.40.630.30 2 145 3.0E-31 T 10-10-2018 AMQ28_14140 2ebf14098add20f1c2380634f40a11a9 149 SUPERFAMILY SSF55729 17 142 6.98E-22 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 412 1.3E-111 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 Gene3D G3DSA:3.40.718.10 1 417 2.9E-178 T 10-10-2018 AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 417 8.3E-215 T 10-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 SMART SM01329 30 412 3.6E-173 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 SUPERFAMILY SSF53659 4 416 1.38E-139 T 10-10-2018 AMQ28_13315 b789bb16c79d3d3e08b7a4c1db90b831 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 303 322 - T 10-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMQ28_04330 38e28fbca8f283b718a7f3daf7fe83b0 134 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 46 97 3.6E-16 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_03310 38e28fbca8f283b718a7f3daf7fe83b0 134 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 46 97 3.6E-16 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_11605 38e28fbca8f283b718a7f3daf7fe83b0 134 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 46 97 3.6E-16 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 677 693 - T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 SUPERFAMILY SSF51905 2 186 9.07E-39 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 7.6E-14 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 7.6E-14 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 7.6E-14 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 7.6E-14 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Gene3D G3DSA:3.30.413.10 628 801 9.3E-33 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 558 618 6.5E-10 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 421 469 3.7E-9 T 10-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 SUPERFAMILY SSF55124 500 639 2.45E-25 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 280 2.4E-48 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Gene3D G3DSA:3.50.50.60 106 241 3.3E-85 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 3 798 0.0 T 10-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 4.1E-8 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 101 110 4.1E-8 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 4.1E-8 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 4.1E-8 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 SUPERFAMILY SSF51905 145 305 2.16E-28 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 SUPERFAMILY SSF56014 631 805 1.96E-49 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PIRSF PIRSF037149 1 836 0.0 T 10-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Gene3D G3DSA:3.50.50.60 4 278 3.3E-85 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Gene3D G3DSA:1.10.10.1100 421 475 1.5E-10 T 10-10-2018 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00397 Sirohaem Fe-binding site signature 634 652 1.2E-6 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 PRINTS PR00397 Sirohaem Fe-binding site signature 677 695 1.2E-6 T 10-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_13555 74c2f1142c637d82a5f91c1582ad4f62 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 630 746 1.9E-15 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_01650 fd73cd7b38ebbad880982efb3c95b80e 227 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 217 4.3E-69 T 10-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMQ28_01650 fd73cd7b38ebbad880982efb3c95b80e 227 Hamap MF_00238 Cytidylate kinase [cmk]. 4 225 31.161 T 10-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMQ28_01650 fd73cd7b38ebbad880982efb3c95b80e 227 SUPERFAMILY SSF52540 1 221 4.32E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01650 fd73cd7b38ebbad880982efb3c95b80e 227 Pfam PF02224 Cytidylate kinase 6 219 5.9E-65 T 10-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMQ28_01650 fd73cd7b38ebbad880982efb3c95b80e 227 Gene3D G3DSA:3.40.50.300 1 227 5.5E-75 T 10-10-2018 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 ProSitePatterns PS00056 Ribosomal protein S17 signature. 57 69 - T 10-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 Gene3D G3DSA:2.40.50.140 2 84 7.9E-36 T 10-10-2018 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 77 1.0E-33 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 SUPERFAMILY SSF50249 7 83 2.91E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 81 25.117 T 10-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 Pfam PF00366 Ribosomal protein S17 11 78 8.0E-32 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 3.1E-12 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 3.1E-12 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 3.1E-12 T 10-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10230 7177fa63ce53371f99fe6d9900677b81 85 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 77 1.4E-36 T 10-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 10-10-2018 IPR010916 TonB box, conserved site AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 Pfam PF00593 TonB dependent receptor 241 679 4.7E-58 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 Gene3D G3DSA:2.40.170.20 173 684 3.7E-123 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 162 1.9E-29 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 Gene3D G3DSA:2.170.130.10 35 167 2.4E-41 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_03890 9e6fc228bcb1bbcf11541d1f80fb0493 684 SUPERFAMILY SSF56935 34 684 1.67E-128 T 10-10-2018 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 Pfam PF00849 RNA pseudouridylate synthase 123 272 9.1E-31 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 166 180 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 SUPERFAMILY SSF55120 109 344 4.32E-74 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 SMART SM00363 50 112 0.0058 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 48 344 1.3E-91 T 10-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 Gene3D G3DSA:3.10.290.10 34 107 1.1E-15 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 Gene3D G3DSA:3.30.2350.10 115 347 4.5E-68 T 10-10-2018 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 Pfam PF01479 S4 domain 51 93 1.6E-5 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_12135 d85b14b2bbe28d3686107c0ef54f29c3 350 SUPERFAMILY SSF55174 47 136 1.14E-8 T 10-10-2018 AMQ28_10965 5ffa9652bcfbf6596ea651e5a78a0eb8 289 PIRSF PIRSF026649 1 285 1.3E-72 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_10965 5ffa9652bcfbf6596ea651e5a78a0eb8 289 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 277 7.1E-50 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 TIGRFAM TIGR03138 QueF: queuine synthase 4 271 3.8E-108 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 Gene3D G3DSA:3.30.1130.10 14 130 4.2E-39 T 10-10-2018 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 Gene3D G3DSA:3.30.1130.10 132 271 9.0E-53 T 10-10-2018 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 SUPERFAMILY SSF55620 155 256 7.41E-12 T 10-10-2018 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 271 114.78 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 Pfam PF14489 QueF-like protein 184 255 3.9E-22 T 10-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 PIRSF PIRSF004750 1 271 3.5E-106 T 10-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMQ28_12895 a8af64ef9ee3ca1706328dc798cec191 271 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 121 7.5E-37 T 10-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 Gene3D G3DSA:3.30.70.100 9 110 3.8E-29 T 10-10-2018 AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 Hamap MF_00469 UPF0176 protein YceA [yceA]. 17 267 42.995 T 10-10-2018 IPR020936 Uncharacterised protein family UPF0176 AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 Pfam PF00581 Rhodanese-like domain 128 223 1.4E-11 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 SMART SM00450 126 227 4.7E-22 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 SUPERFAMILY SSF52821 122 252 5.35E-32 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_12055 aa8fa5bc8a8ed09ceff41d0fb2e06d39 310 Gene3D G3DSA:3.40.250.10 114 260 7.2E-51 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_13890 8bb2385a7a8fce126ecdaf900a8e4e0c 146 PIRSF PIRSF016821 10 135 3.3E-38 T 10-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 AMQ28_13890 8bb2385a7a8fce126ecdaf900a8e4e0c 146 SUPERFAMILY SSF55174 12 107 8.37E-26 T 10-10-2018 AMQ28_13890 8bb2385a7a8fce126ecdaf900a8e4e0c 146 Pfam PF01479 S4 domain 13 58 7.7E-11 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_13890 8bb2385a7a8fce126ecdaf900a8e4e0c 146 Gene3D G3DSA:3.10.290.10 6 112 1.0E-33 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_13890 8bb2385a7a8fce126ecdaf900a8e4e0c 146 SMART SM00363 13 76 1.5E-8 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PIRSF PIRSF001369 39 425 5.0E-170 T 10-10-2018 IPR024176 Citrate synthase, bacterial-type AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 10-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 SUPERFAMILY SSF48256 6 422 3.01E-164 T 10-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 Gene3D G3DSA:2.20.28.60 2 52 3.2E-23 T 10-10-2018 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 Gene3D G3DSA:1.10.580.10 59 411 5.4E-145 T 10-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 422 2.4E-236 T 10-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 Pfam PF00285 Citrate synthase, C-terminal domain 48 411 4.6E-134 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 167 180 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 222 237 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 360 376 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 244 272 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 297 317 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 PRINTS PR00143 Citrate synthase signature 380 394 4.5E-55 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_12220 738a68c615b47864015ebc7cb43b3880 425 Gene3D G3DSA:1.10.230.10 271 377 5.4E-145 T 10-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 SMART SM01193 4 134 2.1E-92 T 10-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 Gene3D G3DSA:3.20.20.120 128 429 1.3E-131 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 SMART SM01192 142 427 9.4E-210 T 10-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 10-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 SUPERFAMILY SSF54826 4 137 7.51E-56 T 10-10-2018 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 Gene3D G3DSA:3.30.390.10 1 127 1.1E-55 T 10-10-2018 IPR029017 Enolase-like, N-terminal AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PIRSF PIRSF001400 1 427 1.4E-190 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 SUPERFAMILY SSF51604 143 416 1.16E-124 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 Hamap MF_00318 Enolase [eno]. 2 415 44.202 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 425 9.8E-132 T 10-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 7.2E-202 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 Pfam PF03952 Enolase, N-terminal domain 4 134 5.4E-59 T 10-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 164 177 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 367 384 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 37 51 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 338 352 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 107 123 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14250 859a178dbdc47d16ad7e16bfff3722f4 429 PRINTS PR00148 Enolase signature 315 326 1.8E-43 T 10-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SMART SM00982 1010 1110 9.6E-48 T 10-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 35 1108 27.092 T 10-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.40.50.11140 359 455 4.2E-9 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SUPERFAMILY SSF52540 8 345 8.85E-83 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.30.2060.10 128 213 6.9E-99 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.40.50.300 480 991 7.9E-228 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.40.50.300 544 783 7.9E-228 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Pfam PF03461 TRCF domain 1011 1101 9.7E-28 T 10-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Pfam PF00271 Helicase conserved C-terminal domain 807 911 1.8E-18 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.40.50.11180 27 338 6.9E-99 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Pfam PF00270 DEAD/DEAH box helicase 609 766 1.6E-19 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:3.90.1150.50 1006 1152 7.3E-44 T 10-10-2018 IPR037235 TRCF-like, C-terminal domain AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SUPERFAMILY SSF52540 353 467 3.07E-21 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SMART SM00490 828 912 4.6E-20 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SMART SM00487 602 797 8.9E-29 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SUPERFAMILY SSF141259 473 550 1.57E-21 T 10-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SMART SM01058 481 578 7.8E-44 T 10-10-2018 IPR003711 CarD-like/TRCF domain AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Gene3D G3DSA:2.30.30.840 485 543 7.9E-228 T 10-10-2018 AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 Pfam PF02559 CarD-like/TRCF domain 482 575 2.9E-21 T 10-10-2018 IPR003711 CarD-like/TRCF domain AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SUPERFAMILY SSF143517 997 1148 2.75E-43 T 10-10-2018 IPR037235 TRCF-like, C-terminal domain AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 SUPERFAMILY SSF52540 653 922 4.53E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14040 aff28f6ea32b0cd5db15fe9a05348a00 1153 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1083 0.0 T 10-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.5E-7 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.5E-7 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 35.981 T 10-10-2018 IPR022927 RNA pyrophosphohydrolase RppH AMQ28_06190 03c1187620b729f25133156334f7aedf 158 SUPERFAMILY SSF55811 7 153 2.71E-30 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 Pfam PF00293 NUDIX domain 7 145 1.1E-25 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_06190 03c1187620b729f25133156334f7aedf 158 Gene3D G3DSA:3.90.79.10 1 155 3.5E-45 T 10-10-2018 AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SUPERFAMILY SSF50998 42 366 1.96E-60 T 10-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 Gene3D G3DSA:2.130.10.10 47 381 2.2E-80 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 9 380 3.8E-110 T 10-10-2018 IPR017687 Outer membrane protein assembly factor BamB AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 381 28.153 T 10-10-2018 IPR017687 Outer membrane protein assembly factor BamB AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 Pfam PF13360 PQQ-like domain 79 310 2.9E-43 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 104 136 6.7E-5 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 280 311 1.2 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 321 352 8.1 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 145 176 0.0061 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 242 273 75.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_05745 2b1b10868aa216d4a47e450fe63cd553 382 SMART SM00564 190 222 5.3 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 Pfam PF03949 Malic enzyme, NAD binding domain 272 531 2.5E-101 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 SUPERFAMILY SSF51735 272 563 5.25E-95 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 ProSitePatterns PS00331 Malic enzymes signature. 268 284 - T 10-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 1 566 69.927 T 10-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PIRSF PIRSF000106 2 564 4.2E-231 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 SMART SM00919 272 532 1.1E-129 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 268 284 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 243 261 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 409 425 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 299 315 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 148 177 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 88 112 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 PRINTS PR00072 Malic enzyme signature 184 206 1.3E-74 T 10-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 SMART SM01274 82 262 6.5E-106 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 SUPERFAMILY SSF53223 5 271 4.53E-110 T 10-10-2018 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 Gene3D G3DSA:3.40.50.720 270 566 2.8E-109 T 10-10-2018 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 Pfam PF00390 Malic enzyme, N-terminal domain 82 262 8.3E-79 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMQ28_12485 8d1c69887878687574b9aa900dde2ca8 566 Gene3D G3DSA:3.40.50.10380 17 269 7.0E-115 T 10-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMQ28_09820 06901683458abe5915d33110606ffb58 128 Pfam PF01042 Endoribonuclease L-PSP 8 124 1.6E-37 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMQ28_09820 06901683458abe5915d33110606ffb58 128 SUPERFAMILY SSF55298 1 126 8.48E-44 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMQ28_09820 06901683458abe5915d33110606ffb58 128 Gene3D G3DSA:3.30.1330.40 3 126 6.1E-50 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMQ28_09820 06901683458abe5915d33110606ffb58 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 1.6E-48 T 10-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 AMQ28_09820 06901683458abe5915d33110606ffb58 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 10-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 Pfam PF04060 Putative Fe-S cluster 15 47 1.2E-9 T 10-10-2018 IPR007202 4Fe-4S domain GO:0051536 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 SUPERFAMILY SSF54862 9 144 2.93E-24 T 10-10-2018 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 6 148 6.4E-55 T 10-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 Gene3D G3DSA:3.20.20.20 7 65 2.1E-5 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 122 133 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 Pfam PF14697 4Fe-4S dicluster domain 85 138 1.7E-15 T 10-10-2018 AMQ28_12420 25c0bbcec78c729b622ee69d034e931f 264 Gene3D G3DSA:3.30.70.20 66 157 2.0E-18 T 10-10-2018 AMQ28_00795 484b1bb9af2d8d433081145574b537d1 237 Pfam PF00665 Integrase core domain 74 185 1.4E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00795 484b1bb9af2d8d433081145574b537d1 237 Gene3D G3DSA:3.30.420.10 69 234 2.0E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00795 484b1bb9af2d8d433081145574b537d1 237 SUPERFAMILY SSF53098 72 231 3.79E-48 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00795 484b1bb9af2d8d433081145574b537d1 237 Pfam PF13276 HTH-like domain 1 50 8.6E-12 T 10-10-2018 IPR025948 HTH-like domain AMQ28_01015 484b1bb9af2d8d433081145574b537d1 237 Pfam PF00665 Integrase core domain 74 185 1.4E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_01015 484b1bb9af2d8d433081145574b537d1 237 Gene3D G3DSA:3.30.420.10 69 234 2.0E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_01015 484b1bb9af2d8d433081145574b537d1 237 SUPERFAMILY SSF53098 72 231 3.79E-48 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_01015 484b1bb9af2d8d433081145574b537d1 237 Pfam PF13276 HTH-like domain 1 50 8.6E-12 T 10-10-2018 IPR025948 HTH-like domain AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 Pfam PF03466 LysR substrate binding domain 99 297 4.5E-29 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 Gene3D G3DSA:1.10.10.10 7 93 1.9E-10 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 SUPERFAMILY SSF46785 7 83 3.72E-9 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 61 3.9E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 Gene3D G3DSA:3.40.190.290 99 301 1.6E-31 T 10-10-2018 AMQ28_00780 7c97bafac3e5f69c3a641ebc7c644513 303 SUPERFAMILY SSF53850 97 295 8.69E-25 T 10-10-2018 AMQ28_02975 8127891809f67b8da4a86604383617b2 199 SUPERFAMILY SSF52540 1 197 2.87E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02975 8127891809f67b8da4a86604383617b2 199 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 191 1.5E-55 T 10-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMQ28_02975 8127891809f67b8da4a86604383617b2 199 Hamap MF_00165 Thymidylate kinase [tmk]. 1 198 27.658 T 10-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMQ28_02975 8127891809f67b8da4a86604383617b2 199 Pfam PF02223 Thymidylate kinase 5 193 1.4E-52 T 10-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMQ28_02975 8127891809f67b8da4a86604383617b2 199 Gene3D G3DSA:3.40.50.300 1 199 2.2E-65 T 10-10-2018 AMQ28_11980 0ff5a8fb8e391e8d163ad6fdb1ba77fd 254 SUPERFAMILY SSF101967 33 147 1.7E-18 T 10-10-2018 AMQ28_11980 0ff5a8fb8e391e8d163ad6fdb1ba77fd 254 Gene3D G3DSA:3.30.1300.30 156 253 1.8E-29 T 10-10-2018 AMQ28_11980 0ff5a8fb8e391e8d163ad6fdb1ba77fd 254 Gene3D G3DSA:2.150.10.10 42 155 2.3E-18 T 10-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMQ28_11980 0ff5a8fb8e391e8d163ad6fdb1ba77fd 254 Pfam PF03895 YadA-like membrane anchor domain 193 253 5.9E-16 T 10-10-2018 IPR005594 YadA-like, C-terminal AMQ28_11980 0ff5a8fb8e391e8d163ad6fdb1ba77fd 254 SUPERFAMILY SSF54523 160 253 1.18E-18 T 10-10-2018 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 2.6E-108 T 10-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:3.30.1480.10 1 133 6.1E-35 T 10-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 415 27.812 T 10-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Pfam PF14520 Helix-hairpin-helix domain 436 490 7.8E-8 T 10-10-2018 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF50249 138 204 7.76E-15 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SMART SM00316 138 203 4.4E-8 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:3.30.300.20 283 351 9.8E-21 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:1.10.150.20 358 426 7.2E-15 T 10-10-2018 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:1.10.150.20 434 492 1.8E-20 T 10-10-2018 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:3.30.300.20 204 282 3.0E-31 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Pfam PF08529 NusA N-terminal domain 4 128 9.4E-35 T 10-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF54814 284 345 3.47E-10 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF47794 432 493 5.65E-14 T 10-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF54814 206 283 1.31E-28 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Gene3D G3DSA:2.40.50.140 140 203 1.4E-14 T 10-10-2018 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF69705 1 130 1.16E-32 T 10-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 Pfam PF13184 NusA-like KH domain 235 302 6.6E-28 T 10-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AMQ28_06580 ec8ea4aa696e043724e4d0311ddabbe3 494 SUPERFAMILY SSF47794 360 420 2.67E-9 T 10-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMQ28_13225 21a37d9368a48bf907ed39cf256ee709 293 Pfam PF10547 P22_AR N-terminal domain 8 118 5.1E-48 T 10-10-2018 IPR018875 Antirepressor protein ANT, N-terminal AMQ28_13225 21a37d9368a48bf907ed39cf256ee709 293 PRINTS PR01994 Antirepressor protein ANT signature 26 47 1.5E-31 T 10-10-2018 IPR018875 Antirepressor protein ANT, N-terminal AMQ28_13225 21a37d9368a48bf907ed39cf256ee709 293 PRINTS PR01994 Antirepressor protein ANT signature 94 116 1.5E-31 T 10-10-2018 IPR018875 Antirepressor protein ANT, N-terminal AMQ28_13225 21a37d9368a48bf907ed39cf256ee709 293 PRINTS PR01994 Antirepressor protein ANT signature 70 93 1.5E-31 T 10-10-2018 IPR018875 Antirepressor protein ANT, N-terminal AMQ28_01605 60927dc80f629fae18d3f5152b4e0696 220 Pfam PF02586 SOS response associated peptidase (SRAP) 26 205 4.9E-28 T 10-10-2018 IPR003738 SOS response associated peptidase (SRAP) AMQ28_01605 60927dc80f629fae18d3f5152b4e0696 220 SUPERFAMILY SSF143081 21 202 2.35E-45 T 10-10-2018 IPR036590 SOS response associated peptidase-like AMQ28_01605 60927dc80f629fae18d3f5152b4e0696 220 Gene3D G3DSA:3.90.1680.10 2 210 7.3E-47 T 10-10-2018 IPR036590 SOS response associated peptidase-like AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Pfam PF13437 HlyD family secretion protein 200 283 5.4E-9 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Gene3D G3DSA:2.40.30.170 214 335 2.7E-22 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Pfam PF13533 Biotin-lipoyl like 48 101 1.6E-12 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 SUPERFAMILY SSF111369 47 124 2.22E-10 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Gene3D G3DSA:1.10.287.470 109 176 7.3E-10 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Gene3D G3DSA:1.10.287.470 82 108 1.3E-12 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 Gene3D G3DSA:2.40.50.100 48 81 1.3E-12 T 10-10-2018 AMQ28_06670 73d110f084af4550c0bc6d4b802608a2 336 SUPERFAMILY SSF111369 112 247 1.83E-7 T 10-10-2018 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 SUPERFAMILY SSF50129 318 369 1.37E-11 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.7E-220 T 10-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 SMART SM00829 12 367 2.5E-4 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 SUPERFAMILY SSF50129 1 184 1.83E-70 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 7.9E-26 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 Gene3D G3DSA:3.40.50.720 174 312 2.5E-150 T 10-10-2018 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 Pfam PF00107 Zinc-binding dehydrogenase 197 330 2.4E-24 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 SUPERFAMILY SSF51735 161 333 2.52E-46 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00445 883d2bec0d5ec6c72a1a67095728929f 371 Gene3D G3DSA:3.90.180.10 6 364 2.5E-150 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 SUPERFAMILY SSF50022 11 123 7.85E-35 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Pfam PF13806 Rieske-like [2Fe-2S] domain 12 114 1.6E-36 T 10-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Gene3D G3DSA:3.50.50.60 244 369 3.7E-91 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Gene3D G3DSA:2.102.10.10 3 116 8.2E-34 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 12 114 5.4E-33 T 10-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 SUPERFAMILY SSF51905 274 436 1.41E-30 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Gene3D G3DSA:3.30.390.30 446 530 2.1E-5 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Gene3D G3DSA:3.50.50.60 136 434 3.7E-91 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 409 4.8E-11 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 301 4.8E-11 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 377 4.8E-11 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 156 4.8E-11 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 134 412 1.3E-55 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 362 378 8.9E-19 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 249 8.9E-19 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 387 409 8.9E-19 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 8.9E-19 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 154 8.9E-19 T 10-10-2018 AMQ28_13560 e3ad431cda31f26701c169ae326e5bd4 541 SUPERFAMILY SSF51905 131 322 7.52E-44 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF04545 Sigma-70, region 4 561 614 5.4E-18 T 10-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF03979 Sigma-70 factor, region 1.1 8 84 7.2E-27 T 10-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF04539 Sigma-70 region 3 472 547 1.3E-30 T 10-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 SUPERFAMILY SSF88659 466 539 1.48E-20 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Gene3D G3DSA:1.10.220.120 5 66 8.0E-26 T 10-10-2018 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Gene3D G3DSA:1.10.601.10 116 462 6.2E-128 T 10-10-2018 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 SUPERFAMILY SSF88659 523 625 7.85E-27 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 PRINTS PR00046 Major sigma-70 factor signature 601 612 5.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 PRINTS PR00046 Major sigma-70 factor signature 565 577 5.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 PRINTS PR00046 Major sigma-70 factor signature 441 449 5.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 PRINTS PR00046 Major sigma-70 factor signature 586 601 5.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 PRINTS PR00046 Major sigma-70 factor signature 417 430 5.0E-31 T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF04546 Sigma-70, non-essential region 142 362 2.4E-52 T 10-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 586 612 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 389 625 6.0E-122 T 10-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Gene3D G3DSA:1.10.10.10 542 627 4.3E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF00140 Sigma-70 factor, region 1.2 101 131 2.2E-12 T 10-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 SUPERFAMILY SSF88946 118 460 2.35E-93 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Pfam PF04542 Sigma-70 region 2 393 462 1.8E-21 T 10-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Gene3D G3DSA:1.10.10.10 466 541 1.4E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 417 430 - T 10-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 389 614 5.0E-38 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMQ28_12035 858f2bd51889c5fbad66228fcfc327e4 628 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 626 44.028 T 10-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMQ28_09345 6cc9ed4da482463750b3f5d09dc3d25b 281 Pfam PF11356 Type II secretion system protein C 26 146 1.3E-15 T 10-10-2018 IPR024961 Type II secretion system protein C, N-terminal AMQ28_09345 6cc9ed4da482463750b3f5d09dc3d25b 281 SUPERFAMILY SSF50156 192 277 6.84E-13 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_09345 6cc9ed4da482463750b3f5d09dc3d25b 281 Gene3D G3DSA:2.30.30.830 83 147 1.7E-7 T 10-10-2018 AMQ28_09345 6cc9ed4da482463750b3f5d09dc3d25b 281 Pfam PF13180 PDZ domain 214 276 6.9E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_09345 6cc9ed4da482463750b3f5d09dc3d25b 281 Gene3D G3DSA:2.30.42.10 183 280 4.3E-13 T 10-10-2018 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Gene3D G3DSA:3.30.565.10 868 1027 1.3E-31 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SUPERFAMILY SSF47384 792 869 5.89E-11 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SMART SM00387 913 1027 4.6E-20 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SMART SM00448 1046 1155 3.6E-4 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Pfam PF00072 Response regulator receiver domain 1048 1153 2.6E-10 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SUPERFAMILY SSF55785 644 764 3.56E-9 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Pfam PF12860 PAS fold 657 770 1.7E-43 T 10-10-2018 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Pfam PF00512 His Kinase A (phospho-acceptor) domain 804 869 8.9E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SMART SM00388 804 869 6.2E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SUPERFAMILY SSF55874 860 1031 1.22E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Gene3D G3DSA:3.40.50.2300 1040 1158 8.0E-16 T 10-10-2018 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 SUPERFAMILY SSF52172 1046 1156 4.13E-13 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Gene3D G3DSA:1.10.287.130 771 867 1.3E-12 T 10-10-2018 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Gene3D G3DSA:3.30.450.20 639 770 4.8E-12 T 10-10-2018 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1011 1024 1.5E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 987 1005 1.5E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 PRINTS PR00344 Bacterial sensor protein C-terminal signature 952 966 1.5E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_08770 d5acc0eda4c87c4014a787b7eb246a03 1163 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 914 1024 7.6E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 Gene3D G3DSA:1.10.1900.20 56 119 1.7E-24 T 10-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 Gene3D G3DSA:1.10.720.90 2 55 2.1E-23 T 10-10-2018 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.1E-38 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.1E-38 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.1E-38 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.3E-45 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-21 T 10-10-2018 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.959 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 SUPERFAMILY SSF74731 3 117 2.75E-46 T 10-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05635 d17cdba171853a734f6e8de4dc10cf6f 119 Pfam PF00453 Ribosomal protein L20 3 109 1.7E-45 T 10-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 7.3E-191 T 10-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 Pfam PF13481 AAA domain 86 224 7.7E-12 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 176 200 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 10 34 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 84 112 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 126 143 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 250 276 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 323 346 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 PRINTS PR01874 DNA repair protein radA signature 215 243 6.7E-92 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 SMART SM00382 92 247 1.2E-6 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 SUPERFAMILY SSF52540 71 289 9.16E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 SUPERFAMILY SSF54211 257 457 4.17E-39 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 42.718 T 10-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 Pfam PF13541 Subunit ChlI of Mg-chelatase 347 431 1.1E-6 T 10-10-2018 AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 Gene3D G3DSA:3.30.230.10 313 459 1.7E-17 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_03360 206ce1b677e1ac1f18902f58acf92f23 463 Gene3D G3DSA:3.40.50.300 68 281 6.4E-39 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Pfam PF08335 GlnD PII-uridylyltransferase 785 880 2.9E-9 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Pfam PF08335 GlnD PII-uridylyltransferase 270 409 1.2E-40 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Gene3D G3DSA:1.20.120.1510 409 517 1.7E-16 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 1 907 18.042 T 10-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 SUPERFAMILY SSF81301 481 773 3.11E-77 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 SUPERFAMILY SSF81301 3 259 4.74E-67 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 SUPERFAMILY SSF81593 260 409 1.18E-41 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Gene3D G3DSA:1.20.120.330 258 408 3.3E-50 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Gene3D G3DSA:3.30.460.100 15 253 1.1E-58 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Gene3D G3DSA:3.30.460.100 518 769 1.6E-74 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Gene3D G3DSA:1.20.120.330 770 907 1.4E-42 T 10-10-2018 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 4 243 3.0E-62 T 10-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 509 762 1.9E-69 T 10-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMQ28_10895 0181dad00c9c0d7881c92131a32dae02 914 SUPERFAMILY SSF81593 775 905 8.63E-29 T 10-10-2018 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 10-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Gene3D G3DSA:3.30.479.20 57 148 8.4E-26 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Gene3D G3DSA:1.10.286.20 188 234 7.2E-36 T 10-10-2018 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 10-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Pfam PF00889 Elongation factor TS 71 269 2.9E-61 T 10-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 286 7.9E-94 T 10-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Gene3D G3DSA:3.30.479.20 153 268 7.2E-36 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Gene3D G3DSA:1.10.8.10 1 56 1.7E-24 T 10-10-2018 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 72.771 T 10-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 SUPERFAMILY SSF46934 4 54 6.38E-18 T 10-10-2018 IPR009060 UBA-like superfamily GO:0005515 AMQ28_12865 f0286b45ceff3b7fe8c5640182beea17 291 SUPERFAMILY SSF54713 57 269 1.23E-42 T 10-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMQ28_06235 c6ca9bef7944e19598f607308c89b3ec 222 Gene3D G3DSA:1.10.150.240 20 83 2.1E-48 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMQ28_06235 c6ca9bef7944e19598f607308c89b3ec 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 1.2E-32 T 10-10-2018 AMQ28_06235 c6ca9bef7944e19598f607308c89b3ec 222 Gene3D G3DSA:3.40.50.1000 8 204 2.1E-48 T 10-10-2018 IPR023214 HAD superfamily AMQ28_06235 c6ca9bef7944e19598f607308c89b3ec 222 SUPERFAMILY SSF56784 3 214 6.14E-54 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_06235 c6ca9bef7944e19598f607308c89b3ec 222 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 75 176 7.4E-11 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Gene3D G3DSA:2.40.50.100 2 79 3.4E-21 T 10-10-2018 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Pfam PF02817 e3 binding domain 122 152 6.4E-10 T 10-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Gene3D G3DSA:4.10.320.10 117 158 1.1E-11 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 401 3.5E-176 T 10-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 SUPERFAMILY SSF52777 174 401 1.56E-87 T 10-10-2018 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 172 399 1.2E-80 T 10-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Gene3D G3DSA:3.30.559.10 170 402 1.1E-94 T 10-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 SUPERFAMILY SSF51230 1 92 9.55E-24 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 SUPERFAMILY SSF47005 120 156 2.09E-9 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMQ28_12255 c24c1013f60f7b66c280df4b92e5c897 402 Pfam PF00364 Biotin-requiring enzyme 4 75 3.3E-19 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 133 466 2.1E-113 T 10-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 290 297 - T 10-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 286 304 2.2E-19 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 250 263 2.2E-19 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 313 329 2.2E-19 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 369 386 2.2E-19 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 410 425 2.2E-19 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 132 242 2.0E-21 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 SUPERFAMILY SSF51735 132 308 3.88E-44 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 Gene3D G3DSA:3.30.360.10 291 456 3.8E-115 T 10-10-2018 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 297 454 2.0E-47 T 10-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 SUPERFAMILY SSF55347 292 455 2.83E-55 T 10-10-2018 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 Gene3D G3DSA:3.40.50.720 133 467 3.8E-115 T 10-10-2018 AMQ28_02850 3ddeb3ec9c4ee1e4231b5f4de89e8fc5 485 SMART SM00846 131 292 6.4E-53 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF56042 423 606 3.14E-49 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF56042 810 1016 2.09E-44 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1021 1275 1.2E-103 T 10-10-2018 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:3.40.50.880 964 1276 5.7E-133 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 5 1274 0.0 T 10-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF55326 215 420 4.19E-60 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF82697 1 145 8.37E-31 T 10-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF55326 612 809 4.71E-66 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF109736 149 214 1.96E-20 T 10-10-2018 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SUPERFAMILY SSF52317 1018 1275 8.4E-95 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 SMART SM01211 1021 1275 1.6E-150 T 10-10-2018 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:1.10.8.750 147 207 8.1E-27 T 10-10-2018 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:3.30.1330.10 610 797 1.1E-26 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1276 20.213 T 10-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:3.90.650.10 801 963 3.8E-21 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:3.90.650.10 415 599 4.1E-58 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Gene3D G3DSA:3.30.1330.10 208 414 5.5E-41 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 424 582 4.1E-28 T 10-10-2018 IPR010918 PurM-like, C-terminal domain AMQ28_03085 dcb674516630d70454ec4d6c0821758b 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 858 948 4.7E-7 T 10-10-2018 IPR010918 PurM-like, C-terminal domain AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 1.1E-35 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SMART SM00878 336 443 3.0E-48 T 10-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Gene3D G3DSA:2.40.50.100 581 657 3.5E-23 T 10-10-2018 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SUPERFAMILY SSF52440 1 113 2.88E-49 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Gene3D G3DSA:3.30.470.130 1 451 7.1E-197 T 10-10-2018 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SMART SM01209 114 293 0.0079 T 10-10-2018 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 5.2E-75 T 10-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SUPERFAMILY SSF51230 582 656 3.93E-20 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SUPERFAMILY SSF51246 331 447 5.76E-37 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 SUPERFAMILY SSF56059 83 347 4.95E-67 T 10-10-2018 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 613 630 - T 10-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Pfam PF00364 Biotin-requiring enzyme 591 655 2.1E-15 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_00685 6bc2f48b66cea4da675e1997667c720e 664 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.6E-46 T 10-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 401 420 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 180 279 3.8E-14 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 SUPERFAMILY SSF47203 287 445 1.26E-37 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 442 1.7E-31 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 SUPERFAMILY SSF56645 120 296 1.97E-28 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 Gene3D G3DSA:1.20.140.10 290 444 3.9E-35 T 10-10-2018 AMQ28_06205 34c7cf6ae9e45a67439f352979b9bea4 549 Gene3D G3DSA:2.40.110.20 130 289 2.1E-51 T 10-10-2018 AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 Gene3D G3DSA:1.10.8.590 191 276 1.2E-20 T 10-10-2018 AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 PIRSF PIRSF004808 11 268 2.0E-67 T 10-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 14 263 3.1E-67 T 10-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 SUPERFAMILY SSF75217 13 174 3.56E-36 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 Gene3D G3DSA:3.40.1280.10 12 178 1.8E-61 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_13735 3871cbc7a482dad96f69b7fc5f439923 285 Pfam PF00588 SpoU rRNA Methylase family 16 167 5.8E-34 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 PIRSF PIRSF000216 5 169 1.3E-48 T 10-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 Gene3D G3DSA:3.40.30.10 86 168 5.4E-23 T 10-10-2018 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 126 144 - T 10-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 SUPERFAMILY SSF52833 18 168 5.81E-46 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 24 168 1.7E-45 T 10-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 168 8.3E-46 T 10-10-2018 AMQ28_04550 df966955da7cdad005b99cb3121cbff8 169 Gene3D G3DSA:1.10.10.1590 16 85 3.7E-15 T 10-10-2018 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 SMART SM00245 360 570 1.9E-36 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 236 589 3.5E-76 T 10-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 SUPERFAMILY SSF52096 225 574 5.14E-54 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 Gene3D G3DSA:3.90.226.10 359 589 2.0E-54 T 10-10-2018 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 Gene3D G3DSA:2.30.42.10 268 353 1.6E-12 T 10-10-2018 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 SMART SM00228 276 356 9.2E-9 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 274 351 1.2E-10 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 Pfam PF03572 Peptidase family S41 395 568 2.2E-41 T 10-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 SUPERFAMILY SSF50156 272 359 4.66E-13 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_05455 be96f402d060111e22ce52ebb1b2f046 733 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 574 722 1.6E-30 T 10-10-2018 IPR020992 Tail specific protease, C-terminal AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 PIRSF PIRSF006487 5 209 8.0E-7 T 10-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 115 179 7.0E-22 T 10-10-2018 IPR017703 YgfZ/GcvT conserved site AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 SUPERFAMILY SSF103025 7 167 9.26E-35 T 10-10-2018 AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 Gene3D G3DSA:2.40.30.160 124 227 1.7E-17 T 10-10-2018 AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 84 4.6E-6 T 10-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMQ28_11345 86cfc646d4351fd9aaaef36aeec1ee3f 240 Gene3D G3DSA:3.30.70.1400 8 92 1.5E-18 T 10-10-2018 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Gene3D G3DSA:1.10.3090.10 122 410 4.8E-41 T 10-10-2018 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 SUPERFAMILY SSF81301 2 119 2.72E-32 T 10-10-2018 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Gene3D G3DSA:3.30.460.10 1 121 9.0E-31 T 10-10-2018 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 SUPERFAMILY SSF81891 120 361 6.41E-52 T 10-10-2018 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 406 52.104 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 PIRSF PIRSF000813 1 407 9.5E-189 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Pfam PF01743 Poly A polymerase head domain 3 122 3.3E-20 T 10-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 150 212 7.2E-14 T 10-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMQ28_03430 0d2e55ba059a6ef9e0bfe90491f1e17c 411 Hamap MF_01262 CCA-adding enzyme [cca]. 1 400 40.112 T 10-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AMQ28_10475 6fc0370c3132c644c7b5e2186e93c02a 212 SUPERFAMILY SSF55895 26 208 7.72E-17 T 10-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMQ28_10475 6fc0370c3132c644c7b5e2186e93c02a 212 Pfam PF00445 Ribonuclease T2 family 34 190 2.7E-4 T 10-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMQ28_10475 6fc0370c3132c644c7b5e2186e93c02a 212 Gene3D G3DSA:3.90.730.10 25 211 4.9E-10 T 10-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 10-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.976 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.6E-57 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 Gene3D G3DSA:3.90.1170.10 1 137 9.4E-56 T 10-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 SUPERFAMILY SSF54686 1 134 2.09E-54 T 10-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 6.5E-48 T 10-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 8.9E-38 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 8.9E-38 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 8.9E-38 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10220 41e033a4716b9768def081f5a8cf977f 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 8.9E-38 T 10-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 4.8E-37 T 10-10-2018 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.8E-37 T 10-10-2018 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 4.8E-37 T 10-10-2018 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.8E-37 T 10-10-2018 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 4.8E-37 T 10-10-2018 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 301 3.6E-47 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 SUPERFAMILY SSF51905 2 313 1.3E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 313 1.7E-118 T 10-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 Gene3D G3DSA:3.50.50.60 117 244 4.8E-119 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 294 313 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 1.2E-78 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 10-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMQ28_11465 efa53114c310a3034aebbf35bfaf215a 318 Gene3D G3DSA:3.50.50.60 8 312 4.8E-119 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09260 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09260 bf63f9f9eed18f0d700b621c1ec70555 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09260 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 10-10-2018 IPR025246 Transposase IS30-like HTH domain AMQ28_09260 bf63f9f9eed18f0d700b621c1ec70555 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_06175 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_06175 bf63f9f9eed18f0d700b621c1ec70555 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_06175 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 10-10-2018 IPR025246 Transposase IS30-like HTH domain AMQ28_06175 bf63f9f9eed18f0d700b621c1ec70555 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00520 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00520 bf63f9f9eed18f0d700b621c1ec70555 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00520 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 10-10-2018 IPR025246 Transposase IS30-like HTH domain AMQ28_00520 bf63f9f9eed18f0d700b621c1ec70555 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_10950 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_10950 bf63f9f9eed18f0d700b621c1ec70555 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_10950 bf63f9f9eed18f0d700b621c1ec70555 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 10-10-2018 IPR025246 Transposase IS30-like HTH domain AMQ28_10950 bf63f9f9eed18f0d700b621c1ec70555 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00645 2e29d68edfd0d35436c9aa24e560630f 455 Gene3D G3DSA:2.40.160.10 91 455 6.6E-6 T 10-10-2018 IPR023614 Porin domain superfamily AMQ28_00645 2e29d68edfd0d35436c9aa24e560630f 455 SUPERFAMILY SSF56935 93 447 1.67E-24 T 10-10-2018 AMQ28_00465 34148995dacef7eabaa1a717b94f8153 352 Gene3D G3DSA:3.20.20.70 5 347 4.2E-133 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_00465 34148995dacef7eabaa1a717b94f8153 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 17 345 7.7E-122 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMQ28_00465 34148995dacef7eabaa1a717b94f8153 352 Pfam PF00793 DAHP synthetase I family 45 335 5.6E-76 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_00465 34148995dacef7eabaa1a717b94f8153 352 PIRSF PIRSF001361 2 350 2.3E-134 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMQ28_00465 34148995dacef7eabaa1a717b94f8153 352 SUPERFAMILY SSF51569 14 344 9.84E-108 T 10-10-2018 AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 SUPERFAMILY SSF55920 180 438 4.45E-83 T 10-10-2018 IPR036005 Creatinase/aminopeptidase-like AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 SMART SM01011 4 141 2.5E-55 T 10-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 128 1.5E-36 T 10-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 Gene3D G3DSA:3.90.230.10 177 441 1.3E-96 T 10-10-2018 AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 Gene3D G3DSA:3.40.350.10 4 176 4.6E-54 T 10-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 Pfam PF00557 Metallopeptidase family M24 185 417 2.7E-60 T 10-10-2018 IPR000994 Peptidase M24 AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 352 364 - T 10-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AMQ28_12520 9b931a8016a0a650eb74986e5bb82fa9 441 SUPERFAMILY SSF53092 5 179 4.19E-47 T 10-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 Pfam PF01521 Iron-sulphur cluster biosynthesis 7 106 3.5E-17 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 Gene3D G3DSA:2.60.300.12 6 111 1.4E-32 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 8 110 4.6E-37 T 10-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 92 109 - T 10-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 SUPERFAMILY SSF89360 4 97 2.55E-29 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_08050 5e1e93a8da167ee96dc34edb57141114 111 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 111 32.728 T 10-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 SUPERFAMILY SSF52540 147 395 1.29E-72 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Gene3D G3DSA:2.40.50.920 25 101 5.6E-13 T 10-10-2018 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Gene3D G3DSA:3.40.50.300 141 327 1.8E-70 T 10-10-2018 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 SUPERFAMILY SSF140990 407 602 8.89E-73 T 10-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Gene3D G3DSA:1.10.8.60 328 401 4.2E-27 T 10-10-2018 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 SMART SM00382 189 328 1.4E-25 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 ProSitePatterns PS00674 AAA-protein family signature. 296 314 - T 10-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 1.4E-45 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Gene3D G3DSA:1.20.58.760 402 600 1.3E-70 T 10-10-2018 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Pfam PF01434 Peptidase family M41 387 593 6.3E-77 T 10-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 594 1.2E-232 T 10-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 609 36.415 T 10-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMQ28_03715 d08664eb7dc80a93e61c1be6302e81ff 629 Pfam PF06480 FtsH Extracellular 9 75 1.7E-8 T 10-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AMQ28_11735 96e74309a15e4affeaa3e00303a9f0ae 205 SUPERFAMILY SSF56784 1 195 4.06E-44 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_11735 96e74309a15e4affeaa3e00303a9f0ae 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 201 1.3E-94 T 10-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 AMQ28_11735 96e74309a15e4affeaa3e00303a9f0ae 205 Gene3D G3DSA:3.40.50.1000 3 191 2.5E-77 T 10-10-2018 IPR023214 HAD superfamily AMQ28_11735 96e74309a15e4affeaa3e00303a9f0ae 205 Gene3D G3DSA:3.90.1470.10 13 128 2.5E-77 T 10-10-2018 AMQ28_11735 96e74309a15e4affeaa3e00303a9f0ae 205 Pfam PF00702 haloacid dehalogenase-like hydrolase 59 164 4.5E-11 T 10-10-2018 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 SMART SM00388 220 282 5.1E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 SUPERFAMILY SSF47384 204 281 2.55E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 SMART SM00387 328 437 2.3E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 1.2E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 415 1.2E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 379 1.2E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 SUPERFAMILY SSF55874 272 436 3.01E-35 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 Gene3D G3DSA:1.10.287.130 169 282 1.8E-18 T 10-10-2018 AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 Gene3D G3DSA:3.30.565.10 288 437 2.9E-31 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 330 436 1.4E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_11845 3171ee70e904a48a166782e9da97e5bd 437 Pfam PF00512 His Kinase A (phospho-acceptor) domain 221 281 2.7E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 Gene3D G3DSA:2.60.130.10 1 306 8.3E-118 T 10-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 Pfam PF04444 Catechol dioxygenase N terminus 23 92 2.5E-21 T 10-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 SUPERFAMILY SSF49482 15 292 3.01E-81 T 10-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 133 161 - T 10-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 2 287 6.5E-144 T 10-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 AMQ28_00620 54add29ea45e2cfd807f34160e308f54 306 Pfam PF00775 Dioxygenase 101 288 2.0E-58 T 10-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMQ28_06765 6636093b6d25d83200037872b5083860 305 Pfam PF00589 Phage integrase family 122 290 4.3E-51 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_06765 6636093b6d25d83200037872b5083860 305 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 24 305 2.4E-107 T 10-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMQ28_06765 6636093b6d25d83200037872b5083860 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 19 305 54.526 T 10-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMQ28_06765 6636093b6d25d83200037872b5083860 305 Gene3D G3DSA:1.10.443.10 120 299 2.1E-68 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_06765 6636093b6d25d83200037872b5083860 305 Gene3D G3DSA:1.10.150.130 18 108 5.9E-14 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_06765 6636093b6d25d83200037872b5083860 305 SUPERFAMILY SSF47823 24 107 2.16E-13 T 10-10-2018 AMQ28_06765 6636093b6d25d83200037872b5083860 305 SUPERFAMILY SSF56349 118 303 5.89E-57 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_06765 6636093b6d25d83200037872b5083860 305 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 17 305 54.506 T 10-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMQ28_06765 6636093b6d25d83200037872b5083860 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 21 99 1.5E-13 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Gene3D G3DSA:3.30.420.40 11 375 8.0E-84 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Pfam PF14450 Cell division protein FtsA 208 377 3.2E-20 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 161 1.1E-8 T 10-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Gene3D G3DSA:3.90.640.10 236 299 8.0E-84 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Gene3D G3DSA:3.30.420.40 198 351 8.0E-84 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Gene3D G3DSA:3.30.1490.110 83 170 8.0E-84 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 379 8.4E-92 T 10-10-2018 IPR020823 Cell division protein FtsA AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 420 22.412 T 10-10-2018 IPR020823 Cell division protein FtsA AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 Pfam PF14450 Cell division protein FtsA 9 165 2.8E-9 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 SUPERFAMILY SSF53067 199 380 1.58E-34 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 SUPERFAMILY SSF53067 8 198 2.1E-37 T 10-10-2018 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 SMART SM00842 8 197 6.5E-62 T 10-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMQ28_08630 30c8ccce9ce0b54e415860c83e33942e 420 PIRSF PIRSF003101 1 420 6.7E-101 T 10-10-2018 IPR020823 Cell division protein FtsA AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 SMART SM00882 6 219 6.5E-76 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 1.4E-118 T 10-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 Gene3D G3DSA:3.40.1080.10 1 226 1.7E-75 T 10-10-2018 AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 Pfam PF01144 Coenzyme A transferase 7 218 6.9E-71 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 10-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AMQ28_00590 3c15f680d518f12cd91c0e2eca030e12 228 SUPERFAMILY SSF100950 2 221 5.51E-76 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_13645 880939131b6dde24b05dee30c247114e 188 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 13 178 24.64 T 10-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AMQ28_13645 880939131b6dde24b05dee30c247114e 188 Pfam PF03968 OstA-like protein 45 153 2.7E-27 T 10-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMQ28_13645 880939131b6dde24b05dee30c247114e 188 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 34 177 1.2E-40 T 10-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AMQ28_13645 880939131b6dde24b05dee30c247114e 188 Gene3D G3DSA:2.60.450.10 34 181 2.9E-44 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 SUPERFAMILY SSF55124 253 419 1.31E-22 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 SUPERFAMILY SSF55124 1 125 1.8E-28 T 10-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 SUPERFAMILY SSF56014 120 279 2.36E-42 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Gene3D G3DSA:3.30.413.10 119 315 7.5E-74 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 SUPERFAMILY SSF56014 406 545 9.03E-39 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Gene3D G3DSA:3.30.413.10 406 547 5.2E-30 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Gene3D G3DSA:3.90.480.10 53 387 7.5E-74 T 10-10-2018 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 408 544 1.3E-9 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 1.0E-40 T 10-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 1.5E-15 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_04705 8c39c85747d455594ba6aeea60ac47aa 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 328 396 9.8E-14 T 10-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 SUPERFAMILY SSF47203 300 425 1.61E-36 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 80 190 4.2E-17 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 Gene3D G3DSA:1.20.140.10 298 429 1.4E-35 T 10-10-2018 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 SUPERFAMILY SSF56645 75 287 4.19E-31 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 Gene3D G3DSA:1.10.540.10 69 192 1.7E-20 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 302 425 1.0E-29 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 Gene3D G3DSA:2.40.110.10 194 296 2.2E-9 T 10-10-2018 AMQ28_00210 8826ab373f626d33a92d48fc9b72b8d7 431 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 399 418 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 184 1.7E-13 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Pfam PF00183 Hsp90 protein 222 639 1.2E-125 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Gene3D G3DSA:1.20.120.790 511 641 2.1E-40 T 10-10-2018 IPR037196 HSP90, C-terminal domain AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 SUPERFAMILY SSF54211 247 504 2.28E-94 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Gene3D G3DSA:3.30.230.80 246 417 3.7E-66 T 10-10-2018 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 95 112 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 7 27 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 192 210 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 28 50 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 122 144 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 174 191 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PRINTS PR00775 90kDa heat shock protein signature 77 94 7.9E-62 T 10-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Gene3D G3DSA:3.30.565.10 1 229 2.8E-77 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Gene3D G3DSA:3.40.50.11260 418 505 3.3E-32 T 10-10-2018 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 PIRSF PIRSF002583 1 641 2.1E-213 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 SMART SM00387 29 186 4.0E-5 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 640 30.932 T 10-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 SUPERFAMILY SSF110942 530 640 2.62E-33 T 10-10-2018 IPR037196 HSP90, C-terminal domain AMQ28_09470 091f44a7a571b6db656caf01cccb7148 641 SUPERFAMILY SSF55874 7 217 1.16E-66 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.4E-209 T 10-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.1E-31 T 10-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SMART SM00959 5 47 8.6E-17 T 10-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SUPERFAMILY SSF50249 48 125 2.06E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Gene3D G3DSA:2.40.50.140 47 123 9.8E-34 T 10-10-2018 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Gene3D G3DSA:1.10.720.10 1 46 4.1E-20 T 10-10-2018 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Gene3D G3DSA:3.40.50.300 130 417 2.3E-127 T 10-10-2018 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SUPERFAMILY SSF52540 90 370 5.04E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-15 T 10-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SMART SM00357 52 118 1.5E-18 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.7E-22 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SUPERFAMILY SSF68912 1 46 2.2E-11 T 10-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 240.906 T 10-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMQ28_05270 5c165b50b7a33ffbc7145132ddef0622 422 SMART SM00382 170 355 1.7E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 SUPERFAMILY SSF47336 2 77 1.7E-21 T 10-10-2018 IPR036736 ACP-like superfamily AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 Pfam PF00550 Phosphopantetheine attachment site 7 73 1.4E-15 T 10-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 7.0E-14 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 3 76 8.8E-29 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 20.243 T 10-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 10-10-2018 IPR006162 Phosphopantetheine attachment site AMQ28_04785 715c1def2f2bf8894b59eaa44f27edb6 78 Gene3D G3DSA:1.10.1200.10 2 77 2.5E-25 T 10-10-2018 IPR036736 ACP-like superfamily AMQ28_08830 a2171634bee3e16af31ff8bdd5b148e2 454 Pfam PF07690 Major Facilitator Superfamily 15 349 9.3E-41 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_08830 a2171634bee3e16af31ff8bdd5b148e2 454 Gene3D G3DSA:1.20.1250.20 1 383 8.8E-70 T 10-10-2018 AMQ28_08830 a2171634bee3e16af31ff8bdd5b148e2 454 Gene3D G3DSA:3.30.70.100 384 448 9.3E-9 T 10-10-2018 AMQ28_08830 a2171634bee3e16af31ff8bdd5b148e2 454 SUPERFAMILY SSF103473 6 385 6.15E-57 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Gene3D G3DSA:1.10.166.10 1 70 1.3E-28 T 10-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 57.187 T 10-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 3.5E-24 T 10-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 SUPERFAMILY SSF51161 2 256 9.43E-74 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 1.1E-12 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 271 2.0E-144 T 10-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Gene3D G3DSA:2.160.10.10 87 257 3.6E-56 T 10-10-2018 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMQ28_03025 d6f1b88d0917a4eecf8615c1dd89f5f0 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0014 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 SUPERFAMILY SSF56655 1 272 3.8E-74 T 10-10-2018 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 Gene3D G3DSA:3.40.190.80 145 271 7.7E-32 T 10-10-2018 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 Gene3D G3DSA:3.30.540.10 1 144 3.3E-44 T 10-10-2018 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 221 235 - T 10-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 10-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 218 242 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 187 208 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 4.7E-48 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_10065 cc9e6357412d8768762c205ff7e8f530 276 Pfam PF00459 Inositol monophosphatase family 2 263 7.0E-65 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 Pfam PF00582 Universal stress protein family 3 146 3.1E-29 T 10-10-2018 IPR006016 UspA AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 Gene3D G3DSA:3.40.50.620 1 147 4.6E-35 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 PRINTS PR01438 Universal stress protein signature 106 118 4.3E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 PRINTS PR01438 Universal stress protein signature 3 21 4.3E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 PRINTS PR01438 Universal stress protein signature 124 146 4.3E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 PIRSF PIRSF006276 1 147 4.8E-23 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01550 e9d2f8da781d9406674e082a3ed753cf 147 SUPERFAMILY SSF52402 1 146 6.61E-35 T 10-10-2018 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 12 392 2.0E-179 T 10-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 SUPERFAMILY SSF53383 26 393 3.76E-117 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 Gene3D G3DSA:3.40.640.10 6 258 2.1E-87 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 Gene3D G3DSA:3.90.1150.10 261 395 2.0E-49 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 13 393 53.868 T 10-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 PIRSF PIRSF001434 1 395 3.2E-130 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_00065 9e7346a4f1dc1d2a2a570b52e3e865c4 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 392 1.7E-138 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 SUPERFAMILY SSF55205 1 418 2.78E-143 T 10-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 5.3E-175 T 10-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 2.3E-108 T 10-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 Gene3D G3DSA:3.65.10.10 6 414 2.2E-174 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 Gene3D G3DSA:3.65.10.10 21 229 2.2E-174 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMQ28_05145 41a42224b2eebe84f209f17289a253b5 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.16 T 10-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_04850 1fde85cb87f52684dc47895979baf916 385 Gene3D G3DSA:3.40.640.10 56 290 4.7E-111 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_04850 1fde85cb87f52684dc47895979baf916 385 Pfam PF00155 Aminotransferase class I and II 40 384 3.7E-55 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_04850 1fde85cb87f52684dc47895979baf916 385 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 10-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMQ28_04850 1fde85cb87f52684dc47895979baf916 385 Gene3D G3DSA:3.90.1150.10 40 383 4.7E-111 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_04850 1fde85cb87f52684dc47895979baf916 385 SUPERFAMILY SSF53383 12 385 8.53E-85 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 Pfam PF09339 IclR helix-turn-helix domain 8 54 5.3E-5 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 SUPERFAMILY SSF46785 4 74 1.99E-8 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 SMART SM00346 3 94 0.009 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 Gene3D G3DSA:3.30.450.40 76 243 1.6E-19 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 Pfam PF01614 Bacterial transcriptional regulator 129 246 8.4E-9 T 10-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 Gene3D G3DSA:1.10.10.10 2 75 4.4E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06685 6e237414920176861a86695f72ab1c5f 257 SUPERFAMILY SSF55781 80 246 1.7E-22 T 10-10-2018 AMQ28_09685 4b35c14f8cfa15d0ac93a11233be7461 110 Pfam PF03356 Viral late protein H2 7 71 2.3E-6 T 10-10-2018 IPR005023 Viral late protein H2 AMQ28_09685 4b35c14f8cfa15d0ac93a11233be7461 110 Pfam PF04999 Cell division protein FtsL 20 101 1.7E-26 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMQ28_09685 4b35c14f8cfa15d0ac93a11233be7461 110 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 20 100 1.4E-13 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMQ28_09685 4b35c14f8cfa15d0ac93a11233be7461 110 Hamap MF_00910 Cell division protein FtsL [ftsL]. 15 100 13.856 T 10-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 AMQ28_14105 d159057e49b227fa349c03a90f7254cb 622 Pfam PF13616 PPIC-type PPIASE domain 257 360 4.3E-26 T 10-10-2018 AMQ28_14105 d159057e49b227fa349c03a90f7254cb 622 SUPERFAMILY SSF54534 268 359 8.5E-22 T 10-10-2018 AMQ28_14105 d159057e49b227fa349c03a90f7254cb 622 Pfam PF13624 SurA N-terminal domain 1 158 5.9E-36 T 10-10-2018 AMQ28_14105 d159057e49b227fa349c03a90f7254cb 622 Gene3D G3DSA:3.10.50.40 267 362 6.2E-25 T 10-10-2018 AMQ28_14105 d159057e49b227fa349c03a90f7254cb 622 SUPERFAMILY SSF109998 42 235 1.14E-24 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 4.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.3E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 Gene3D G3DSA:3.40.50.720 1 260 2.5E-69 T 10-10-2018 AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.1E-36 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 SUPERFAMILY SSF51735 8 258 2.34E-69 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00600 ae351fa8e464921968560ebe74b37719 261 Pfam PF00106 short chain dehydrogenase 10 192 1.5E-53 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_12045 a64902f2bb172d23624ce630a1a27ffc 174 Gene3D G3DSA:1.20.120.740 7 159 3.8E-7 T 10-10-2018 AMQ28_12045 a64902f2bb172d23624ce630a1a27ffc 174 SUPERFAMILY SSF101327 4 172 4.97E-24 T 10-10-2018 IPR036255 YgfB-like superfamily AMQ28_12045 a64902f2bb172d23624ce630a1a27ffc 174 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 6 169 1.5E-22 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMQ28_12045 a64902f2bb172d23624ce630a1a27ffc 174 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 170 1.2E-20 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMQ28_09055 86b6506d039aaec59df2f8e7d8409007 276 Gene3D G3DSA:3.40.50.150 16 272 1.5E-20 T 10-10-2018 AMQ28_09055 86b6506d039aaec59df2f8e7d8409007 276 SUPERFAMILY SSF53335 33 273 5.27E-26 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_09055 86b6506d039aaec59df2f8e7d8409007 276 Pfam PF02353 Mycolic acid cyclopropane synthetase 36 221 6.5E-8 T 10-10-2018 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 Pfam PF01479 S4 domain 4 44 2.0E-7 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 SUPERFAMILY SSF55120 47 229 9.35E-37 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 Gene3D G3DSA:3.30.70.1560 129 210 1.4E-49 T 10-10-2018 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 Gene3D G3DSA:3.30.70.580 62 226 1.4E-49 T 10-10-2018 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 Gene3D G3DSA:3.10.290.10 1 57 5.8E-9 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 Pfam PF00849 RNA pseudouridylate synthase 62 193 1.2E-17 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 SUPERFAMILY SSF55174 3 46 7.85E-8 T 10-10-2018 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 3.3E-40 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMQ28_01815 2933e131d6ca42039f3d1a6ecba4ca85 236 SMART SM00363 1 69 1.1E-4 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 SUPERFAMILY SSF52009 304 424 9.29E-27 T 10-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 SUPERFAMILY SSF47831 208 320 1.83E-24 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 SMART SM00065 21 168 1.1E-21 T 10-10-2018 IPR003018 GAF domain GO:0005515 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Pfam PF05524 PEP-utilising enzyme, N-terminal 183 305 3.0E-22 T 10-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 SUPERFAMILY SSF55781 4 162 3.27E-32 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Gene3D G3DSA:3.30.450.40 2 168 2.0E-47 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 431 718 1.3E-95 T 10-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Gene3D G3DSA:1.10.274.10 201 325 8.6E-58 T 10-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 SUPERFAMILY SSF51621 432 724 1.28E-97 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Pfam PF13185 GAF domain 20 158 2.6E-14 T 10-10-2018 IPR003018 GAF domain GO:0005515 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Gene3D G3DSA:3.50.30.10 184 411 8.6E-58 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 1.4E-23 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 1.4E-23 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 1.4E-23 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 1.4E-23 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Gene3D G3DSA:3.20.20.60 412 752 2.2E-104 T 10-10-2018 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 10-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 184 736 3.1E-126 T 10-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMQ28_06195 025da4ad351eb2cf43861adf9608a265 765 Pfam PF00391 PEP-utilising enzyme, mobile domain 331 403 6.3E-17 T 10-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 Gene3D G3DSA:3.50.50.60 6 309 1.3E-105 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 Pfam PF14759 Reductase C-terminal 320 404 1.1E-28 T 10-10-2018 IPR028202 Reductase, C-terminal AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 2.0E-20 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 2.0E-20 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.0E-20 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 2.0E-20 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.0E-20 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 Gene3D G3DSA:3.30.390.30 320 410 3.9E-32 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 SUPERFAMILY SSF51905 3 191 2.51E-45 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 SUPERFAMILY SSF55424 313 407 9.06E-27 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 SUPERFAMILY SSF51905 146 310 9.99E-32 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 301 7.0E-62 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 3.2E-14 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 3.2E-14 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 3.2E-14 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 3.2E-14 T 10-10-2018 AMQ28_08990 0920f99cdb9df5cf354d018b211246ce 411 Gene3D G3DSA:3.50.50.60 114 238 1.3E-105 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 30.389 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 9.1E-31 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 9.1E-31 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 9.1E-31 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 9.1E-31 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 Gene3D G3DSA:3.10.420.10 1 150 1.7E-49 T 10-10-2018 IPR035958 SecB-like superfamily AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 Pfam PF02556 Preprotein translocase subunit SecB 4 142 9.6E-49 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 SUPERFAMILY SSF54611 2 141 1.24E-44 T 10-10-2018 IPR035958 SecB-like superfamily AMQ28_05330 548b31acd23c5872865b13f27b719e07 151 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 6 141 1.3E-45 T 10-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 Gene3D G3DSA:3.90.226.10 42 297 7.7E-75 T 10-10-2018 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 178 196 5.2E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 215 232 5.2E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 266 275 5.2E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 244 255 5.2E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 144 158 5.2E-39 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 296 35.427 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 Pfam PF01039 Carboxyl transferase domain 112 257 3.2E-16 T 10-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 SUPERFAMILY SSF52096 43 296 3.22E-77 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_11100 5d2d8010f1df5d7f70ede100d6842908 298 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 42 296 2.5E-109 T 10-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 3 121 2.4E-29 T 10-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 SMART SM00480 17 377 5.7E-114 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 SUPERFAMILY SSF55979 129 259 1.45E-21 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Pfam PF02767 DNA polymerase III beta subunit, central domain 133 258 7.1E-30 T 10-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 SUPERFAMILY SSF55979 3 119 2.06E-22 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 SUPERFAMILY SSF55979 260 381 5.8E-34 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Gene3D G3DSA:3.10.150.10 263 381 4.7E-34 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 380 8.1E-95 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 PIRSF PIRSF000804 1 381 4.9E-105 T 10-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Gene3D G3DSA:3.10.150.10 1 124 2.1E-34 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Gene3D G3DSA:3.10.150.10 128 262 1.1E-32 T 10-10-2018 AMQ28_08090 6ec065c78d5468557fee5e7d21eb75a1 381 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 260 380 1.3E-33 T 10-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMQ28_11750 4faf3e31dd7b8f6886e614204bab3470 166 Pfam PF12973 ChrR Cupin-like domain 30 118 8.7E-15 T 10-10-2018 IPR025979 ChrR-like cupin domain AMQ28_11750 4faf3e31dd7b8f6886e614204bab3470 166 SUPERFAMILY SSF51182 25 145 1.2E-25 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_11750 4faf3e31dd7b8f6886e614204bab3470 166 Gene3D G3DSA:2.60.120.10 19 166 3.4E-46 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_07360 df88b104068371e24be7a246f4134f19 349 Gene3D G3DSA:3.30.40.60 214 331 4.4E-12 T 10-10-2018 AMQ28_07360 df88b104068371e24be7a246f4134f19 349 Pfam PF13395 HNH endonuclease 235 282 4.2E-9 T 10-10-2018 IPR003615 HNH nuclease AMQ28_07360 df88b104068371e24be7a246f4134f19 349 SMART SM00507 222 275 2.3E-6 T 10-10-2018 IPR003615 HNH nuclease AMQ28_02630 22e6373928b7b858c13c4831abeab89b 301 Pfam PF01882 Protein of unknown function DUF58 199 273 5.4E-9 T 10-10-2018 IPR002881 Domain of unknown function DUF58 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Gene3D G3DSA:3.30.43.10 1 72 6.3E-18 T 10-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 329 4.1E-62 T 10-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 72.397 T 10-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 SUPERFAMILY SSF56176 9 196 3.41E-36 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 SUPERFAMILY SSF56194 209 336 1.7E-43 T 10-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 211 332 1.0E-30 T 10-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Gene3D G3DSA:3.90.78.10 223 341 3.9E-39 T 10-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Pfam PF01565 FAD binding domain 24 145 8.1E-20 T 10-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMQ28_01470 8724bf3d51ed218728b16fb11e580e6f 344 Gene3D G3DSA:3.30.465.10 73 222 1.3E-50 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 SUPERFAMILY SSF100879 237 336 4.32E-20 T 10-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Gene3D G3DSA:1.10.150.20 165 227 1.5E-18 T 10-10-2018 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Gene3D G3DSA:3.30.70.270 4 163 6.9E-62 T 10-10-2018 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Hamap MF_01113 DNA polymerase IV [dinB]. 1 350 36.54 T 10-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Pfam PF11798 IMS family HHH motif 168 196 1.8E-8 T 10-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Pfam PF00817 impB/mucB/samB family 7 153 5.2E-51 T 10-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Gene3D G3DSA:2.30.40.20 21 72 6.9E-62 T 10-10-2018 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 SUPERFAMILY SSF56672 1 233 5.78E-90 T 10-10-2018 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Gene3D G3DSA:3.30.1490.100 239 347 6.9E-20 T 10-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_06975 84b2f0fdabe756327b074b775ff50565 352 Pfam PF11799 impB/mucB/samB family C-terminal domain 232 345 6.8E-13 T 10-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_03165 c74d7001fd9e84d71f2c4e43085f732d 204 SUPERFAMILY SSF88659 105 193 8.6E-17 T 10-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMQ28_03165 c74d7001fd9e84d71f2c4e43085f732d 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 43 191 2.2E-19 T 10-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMQ28_03165 c74d7001fd9e84d71f2c4e43085f732d 204 Gene3D G3DSA:1.10.10.10 115 195 1.1E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03165 c74d7001fd9e84d71f2c4e43085f732d 204 Pfam PF08281 Sigma-70, region 4 136 185 2.6E-15 T 10-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMQ28_03165 c74d7001fd9e84d71f2c4e43085f732d 204 SUPERFAMILY SSF88946 35 98 2.75E-6 T 10-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMQ28_04440 28243bb600c063aca84914a68f6e28e8 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 7.1E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_04440 28243bb600c063aca84914a68f6e28e8 182 SUPERFAMILY SSF48498 80 182 2.45E-12 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_04440 28243bb600c063aca84914a68f6e28e8 182 Gene3D G3DSA:1.10.357.10 2 182 4.6E-24 T 10-10-2018 AMQ28_04440 28243bb600c063aca84914a68f6e28e8 182 SUPERFAMILY SSF46689 5 70 1.54E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 SUPERFAMILY SSF46689 16 90 9.75E-16 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 73 9.4E-15 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 Gene3D G3DSA:1.10.10.60 8 73 1.1E-20 T 10-10-2018 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 8.6E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 8.6E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_14215 e5f5d5d48e92af4000c33f065c4e1669 216 Gene3D G3DSA:1.10.357.10 88 216 1.7E-17 T 10-10-2018 AMQ28_10425 4f2b1cdc825aff2bac3d86e5b3daef2f 119 SUPERFAMILY SSF54593 5 117 6.85E-13 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_10425 4f2b1cdc825aff2bac3d86e5b3daef2f 119 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 112 3.5E-6 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMQ28_10425 4f2b1cdc825aff2bac3d86e5b3daef2f 119 Gene3D G3DSA:3.10.180.10 6 115 3.7E-11 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_07525 377026523c747545f3e4698b6da7e605 246 SUPERFAMILY SSF52833 93 235 2.04E-29 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_07525 377026523c747545f3e4698b6da7e605 246 Pfam PF13098 Thioredoxin-like domain 115 227 3.5E-11 T 10-10-2018 IPR012336 Thioredoxin-like fold AMQ28_07525 377026523c747545f3e4698b6da7e605 246 Gene3D G3DSA:3.10.450.70 23 90 1.1E-17 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_07525 377026523c747545f3e4698b6da7e605 246 SUPERFAMILY SSF54423 24 79 2.62E-9 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_07525 377026523c747545f3e4698b6da7e605 246 Gene3D G3DSA:3.40.30.10 105 246 8.4E-34 T 10-10-2018 AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 Gene3D G3DSA:3.50.50.60 156 243 1.5E-13 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 Gene3D G3DSA:3.50.50.60 307 479 1.2E-11 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 SUPERFAMILY SSF51905 1 301 1.2E-46 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 Pfam PF00743 Flavin-binding monooxygenase-like 7 389 3.3E-17 T 10-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 SUPERFAMILY SSF51905 281 415 3.05E-11 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10320 d5d34de9411991350128e6bf8e37d80c 496 Gene3D G3DSA:3.50.50.60 3 155 7.1E-33 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 265 273 - T 10-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 18 237 1.5E-98 T 10-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 SUPERFAMILY SSF68923 4 240 1.83E-96 T 10-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Gene3D G3DSA:3.90.228.20 241 600 1.6E-258 T 10-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 241 603 7.6E-168 T 10-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 6 607 50.562 T 10-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Gene3D G3DSA:2.170.8.10 53 394 1.6E-258 T 10-10-2018 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 PIRSF PIRSF001348 1 609 9.7E-270 T 10-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 SUPERFAMILY SSF53795 241 605 3.2E-154 T 10-10-2018 AMQ28_12335 a8e7520cec138f97df98198540f3500d 610 Gene3D G3DSA:3.40.449.10 17 240 1.6E-258 T 10-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMQ28_03050 f741346f463d0446e8215d036f9b51ea 152 Gene3D G3DSA:3.40.30.10 4 151 5.1E-35 T 10-10-2018 AMQ28_03050 f741346f463d0446e8215d036f9b51ea 152 PIRSF PIRSF000239 3 152 1.1E-23 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_03050 f741346f463d0446e8215d036f9b51ea 152 SUPERFAMILY SSF52833 6 150 4.35E-38 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_03050 f741346f463d0446e8215d036f9b51ea 152 Pfam PF00578 AhpC/TSA family 13 126 2.6E-26 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_01275 a2f4d0de439c75f2aedb91b87380d54f 143 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 10 128 1.3E-10 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_01275 a2f4d0de439c75f2aedb91b87380d54f 143 SUPERFAMILY SSF55083 8 138 2.09E-14 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_01275 a2f4d0de439c75f2aedb91b87380d54f 143 Gene3D G3DSA:3.30.70.560 6 142 1.5E-12 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 286 6.8E-55 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 Gene3D G3DSA:3.40.50.720 98 285 1.4E-113 T 10-10-2018 AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 SUPERFAMILY SSF52283 9 137 1.76E-28 T 10-10-2018 AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 SUPERFAMILY SSF51735 102 287 5.53E-53 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 315 1.4E-24 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMQ28_06315 d3f0760f4c63e953d3a46f2015665b99 317 Gene3D G3DSA:3.40.50.720 17 314 1.4E-113 T 10-10-2018 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 200 392 3.3E-10 T 10-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 Gene3D G3DSA:3.90.380.10 28 446 1.1E-101 T 10-10-2018 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 65 80 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 86 106 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 149 175 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 107 127 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 35 60 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 192 214 1.0E-34 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 SUPERFAMILY SSF55961 169 459 1.1E-55 T 10-10-2018 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 Pfam PF00355 Rieske [2Fe-2S] domain 51 134 1.1E-23 T 10-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 SUPERFAMILY SSF50022 18 164 3.4E-46 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 93 116 - T 10-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 Gene3D G3DSA:2.102.10.10 50 174 1.1E-101 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_12695 621fa5fa3b01fb2e570a2dbf903035fa 471 TIGRFAM TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit 13 450 3.3E-282 T 10-10-2018 IPR017638 Anthranilate 1,2-dioxygenase, large subunit KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 897 961 9.2E-20 T 10-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 SUPERFAMILY SSF50677 196 367 4.58E-52 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 PRINTS PR00986 Valyl-tRNA synthetase signature 374 387 1.2E-33 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 PRINTS PR00986 Valyl-tRNA synthetase signature 474 495 1.2E-33 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 PRINTS PR00986 Valyl-tRNA synthetase signature 511 529 1.2E-33 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 PRINTS PR00986 Valyl-tRNA synthetase signature 242 259 1.2E-33 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 PRINTS PR00986 Valyl-tRNA synthetase signature 40 51 1.2E-33 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Pfam PF08264 Anticodon-binding domain of tRNA 685 833 1.4E-39 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Gene3D G3DSA:3.40.50.620 336 566 2.5E-71 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_11910 b24899690960def388f84e1d020799b9 964 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 962 15.699 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Gene3D G3DSA:1.10.287.380 890 962 7.0E-20 T 10-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMQ28_11910 b24899690960def388f84e1d020799b9 964 SUPERFAMILY SSF52374 8 652 8.7E-138 T 10-10-2018 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 642 1.2E-208 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Gene3D G3DSA:3.90.740.10 243 335 3.9E-10 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 SUPERFAMILY SSF46589 897 961 1.94E-15 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMQ28_11910 b24899690960def388f84e1d020799b9 964 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 SUPERFAMILY SSF47323 653 912 9.35E-68 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Gene3D G3DSA:3.40.50.620 9 221 2.3E-68 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_11910 b24899690960def388f84e1d020799b9 964 TIGRFAM TIGR00422 valS: valine--tRNA ligase 9 944 0.0 T 10-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMQ28_11910 b24899690960def388f84e1d020799b9 964 Gene3D G3DSA:1.10.730.10 589 830 2.5E-70 T 10-10-2018 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 PIRSF PIRSF000303 1 160 3.2E-67 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 10-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 1.8E-19 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 1.8E-19 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 PRINTS PR01011 Glutathione peroxidase family signature 123 132 1.8E-19 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 SUPERFAMILY SSF52833 3 159 8.81E-61 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 10-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 Pfam PF00255 Glutathione peroxidase 4 110 4.5E-43 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_08600 d08f4a76a49ceeda87084bf5972b610f 160 Gene3D G3DSA:3.40.30.10 1 160 2.6E-71 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:3.10.20.310 271 347 7.7E-14 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:3.10.20.310 179 269 1.5E-18 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 28 567 6.3E-178 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:3.10.20.310 22 95 2.7E-17 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF01103 Surface antigen 452 860 1.8E-77 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF07244 Surface antigen variable number repeat 351 425 7.8E-14 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF07244 Surface antigen variable number repeat 180 267 4.8E-13 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF07244 Surface antigen variable number repeat 98 176 1.8E-12 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF07244 Surface antigen variable number repeat 29 95 1.6E-4 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Pfam PF07244 Surface antigen variable number repeat 271 348 5.1E-10 T 10-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 PIRSF PIRSF006076 1 860 5.2E-240 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:2.40.160.50 597 860 3.5E-72 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:2.40.160.50 431 596 3.4E-34 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:3.10.20.310 348 425 1.3E-22 T 10-10-2018 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 3 860 23.303 T 10-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMQ28_13850 68029418cfdacef2ef444c0a7a9bab75 860 Gene3D G3DSA:3.10.20.310 96 177 8.2E-16 T 10-10-2018 AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 174 334 1.4E-41 T 10-10-2018 IPR000160 GGDEF domain AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 SMART SM00065 28 171 3.9E-6 T 10-10-2018 IPR003018 GAF domain GO:0005515 AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 Pfam PF00990 Diguanylate cyclase, GGDEF domain 176 332 7.8E-43 T 10-10-2018 IPR000160 GGDEF domain AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 Pfam PF13185 GAF domain 27 160 4.7E-16 T 10-10-2018 IPR003018 GAF domain GO:0005515 AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 SUPERFAMILY SSF55781 13 165 1.4E-21 T 10-10-2018 AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 SMART SM00267 165 336 1.3E-44 T 10-10-2018 IPR000160 GGDEF domain AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 Gene3D G3DSA:3.30.450.40 8 170 4.7E-23 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 SUPERFAMILY SSF55073 181 334 2.59E-41 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_01825 508bdc9acfa783101fa8bd5ab55df2fd 337 Gene3D G3DSA:3.30.70.270 171 336 7.1E-50 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 320 332 5.9E-5 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 208 222 5.9E-5 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 323 329 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 505 692 1.7E-21 T 10-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Pfam PF01170 Putative RNA methylase family UPF0020 175 384 1.3E-36 T 10-10-2018 IPR000241 Putative RNA methylase domain AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Gene3D G3DSA:3.30.2130.30 12 269 5.3E-111 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Gene3D G3DSA:3.40.50.150 182 387 5.3E-111 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Gene3D G3DSA:3.30.750.80 420 511 2.0E-31 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 SUPERFAMILY SSF53335 162 368 1.13E-30 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Gene3D G3DSA:3.40.50.150 512 731 4.1E-68 T 10-10-2018 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 10 732 29.31 T 10-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 SMART SM00981 70 167 4.1E-8 T 10-10-2018 IPR004114 THUMP domain GO:0003723 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 Pfam PF02926 THUMP domain 40 154 8.1E-11 T 10-10-2018 IPR004114 THUMP domain GO:0003723 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 PIRSF PIRSF037618 6 733 3.4E-283 T 10-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 SUPERFAMILY SSF53335 423 731 5.23E-61 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_02340 1ff982663565259d11ef7f759fb73b2f 734 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 210 221 - T 10-10-2018 IPR000241 Putative RNA methylase domain AMQ28_11805 882c6874b8292207324c808914491444 284 SMART SM00244 21 179 6.6E-54 T 10-10-2018 IPR001107 Band 7 domain AMQ28_11805 882c6874b8292207324c808914491444 284 Pfam PF01145 SPFH domain / Band 7 family 25 195 1.0E-35 T 10-10-2018 IPR001107 Band 7 domain AMQ28_11805 882c6874b8292207324c808914491444 284 SUPERFAMILY SSF117892 52 186 9.02E-38 T 10-10-2018 IPR036013 Band 7/SPFH domain superfamily AMQ28_11805 882c6874b8292207324c808914491444 284 PRINTS PR00721 Stomatin signature 131 154 1.4E-23 T 10-10-2018 IPR001972 Stomatin family GO:0016020 AMQ28_11805 882c6874b8292207324c808914491444 284 PRINTS PR00721 Stomatin signature 155 173 1.4E-23 T 10-10-2018 IPR001972 Stomatin family GO:0016020 AMQ28_11805 882c6874b8292207324c808914491444 284 PRINTS PR00721 Stomatin signature 111 128 1.4E-23 T 10-10-2018 IPR001972 Stomatin family GO:0016020 AMQ28_11805 882c6874b8292207324c808914491444 284 PRINTS PR00721 Stomatin signature 174 195 1.4E-23 T 10-10-2018 IPR001972 Stomatin family GO:0016020 AMQ28_11805 882c6874b8292207324c808914491444 284 PRINTS PR00721 Stomatin signature 76 97 1.4E-23 T 10-10-2018 IPR001972 Stomatin family GO:0016020 AMQ28_11805 882c6874b8292207324c808914491444 284 Gene3D G3DSA:3.30.479.30 49 181 3.2E-38 T 10-10-2018 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 Gene3D G3DSA:3.10.290.10 329 401 2.6E-9 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 164 179 3.8E-24 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 49 71 3.8E-24 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 3.8E-24 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 3.8E-24 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 5 402 45.824 T 10-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 55 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 SUPERFAMILY SSF52374 8 312 3.49E-95 T 10-10-2018 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 Gene3D G3DSA:3.40.50.620 7 220 8.3E-75 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 Gene3D G3DSA:1.10.240.10 221 328 1.7E-30 T 10-10-2018 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 SUPERFAMILY SSF55174 327 402 7.46E-12 T 10-10-2018 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 Pfam PF00579 tRNA synthetases class I (W and Y) 33 313 6.0E-77 T 10-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_08195 f11cea25c01ac8955bb95054547c2114 404 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 400 2.7E-116 T 10-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 Gene3D G3DSA:3.40.190.290 92 291 5.7E-41 T 10-10-2018 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.8E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 Pfam PF03466 LysR substrate binding domain 89 291 9.1E-34 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 Gene3D G3DSA:1.10.10.10 1 91 1.6E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 SUPERFAMILY SSF53850 91 290 9.46E-36 T 10-10-2018 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03545 84ad98c2932738d6513a84e388b5518c 293 SUPERFAMILY SSF46785 1 83 4.31E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_02165 08855bef4222866dac504240fec42df5 338 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 304 1.2E-117 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 312 1.4E-132 T 10-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMQ28_02165 08855bef4222866dac504240fec42df5 338 Gene3D G3DSA:3.30.420.40 129 291 5.3E-126 T 10-10-2018 AMQ28_02165 08855bef4222866dac504240fec42df5 338 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 10-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 AMQ28_02165 08855bef4222866dac504240fec42df5 338 Pfam PF00814 Glycoprotease family 25 305 1.6E-102 T 10-10-2018 IPR000905 Gcp-like domain AMQ28_02165 08855bef4222866dac504240fec42df5 338 Gene3D G3DSA:3.30.420.40 3 313 5.3E-126 T 10-10-2018 AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 261 270 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 4.3E-50 T 10-10-2018 IPR017861 Kae1/TsaD family AMQ28_02165 08855bef4222866dac504240fec42df5 338 SUPERFAMILY SSF53067 101 307 6.48E-44 T 10-10-2018 AMQ28_02165 08855bef4222866dac504240fec42df5 338 SUPERFAMILY SSF53067 3 121 6.15E-30 T 10-10-2018 AMQ28_02165 08855bef4222866dac504240fec42df5 338 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 329 62.567 T 10-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 SUPERFAMILY SSF63411 49 281 1.48E-35 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 Gene3D G3DSA:3.30.830.10 285 482 2.8E-46 T 10-10-2018 AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 SUPERFAMILY SSF63411 291 474 1.08E-36 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 Pfam PF05193 Peptidase M16 inactive domain 227 402 5.8E-21 T 10-10-2018 IPR007863 Peptidase M16, C-terminal AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 Pfam PF00675 Insulinase (Peptidase family M16) 81 221 2.0E-13 T 10-10-2018 IPR011765 Peptidase M16, N-terminal AMQ28_00130 81dba129ecd7ef491ed99d2459b33f56 527 Gene3D G3DSA:3.30.830.10 62 275 1.5E-40 T 10-10-2018 AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 149 226 1.8E-18 T 10-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 146 162 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 Gene3D G3DSA:3.40.47.10 2 211 3.4E-52 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 275 367 3.1E-18 T 10-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 Gene3D G3DSA:3.40.47.10 213 369 4.0E-35 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01845 1457440c6bc2fe2018fa1409b2875859 372 SUPERFAMILY SSF53901 2 367 2.27E-45 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 18 227 5.4E-81 T 10-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 SUPERFAMILY SSF52141 15 235 1.35E-87 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 70 79 - T 10-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 Gene3D G3DSA:3.40.470.10 1 237 2.8E-96 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 SMART SM00986 62 223 8.5E-35 T 10-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 Pfam PF03167 Uracil DNA glycosylase superfamily 67 222 3.6E-26 T 10-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 SMART SM00987 62 223 8.5E-35 T 10-10-2018 AMQ28_01670 76b8768bd516525355e613c0ebfe6fa5 237 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 17 234 39.36 T 10-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_11880 6aa81d7fdc26bda60447bb6b5c13f1ad 225 Pfam PF04239 Protein of unknown function (DUF421) 101 166 7.0E-12 T 10-10-2018 IPR007353 Protein of unknown function DUF421 AMQ28_11880 6aa81d7fdc26bda60447bb6b5c13f1ad 225 Gene3D G3DSA:3.30.240.20 92 165 2.0E-15 T 10-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 Pfam PF02272 DHHA1 domain 314 446 3.2E-25 T 10-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 Pfam PF01368 DHH family 71 224 2.2E-11 T 10-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 Gene3D G3DSA:3.90.1640.30 46 318 3.6E-89 T 10-10-2018 AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 Gene3D G3DSA:3.10.310.30 320 450 1.5E-31 T 10-10-2018 AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 SUPERFAMILY SSF64182 52 449 9.03E-110 T 10-10-2018 IPR038763 DHH phosphoesterase superfamily AMQ28_08690 7cf9a38b2f83921d22a4342122ce1037 567 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 561 1.2E-155 T 10-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMQ28_09100 e52d7716d01efeca786a411a93ceddd7 376 Pfam PF02661 Fic/DOC family 151 214 6.9E-17 T 10-10-2018 IPR003812 Fido domain AMQ28_09100 e52d7716d01efeca786a411a93ceddd7 376 Pfam PF13784 Fic/DOC family N-terminal 28 109 4.4E-24 T 10-10-2018 IPR025758 Fic/DOC N-terminal AMQ28_09100 e52d7716d01efeca786a411a93ceddd7 376 SUPERFAMILY SSF140931 95 280 6.15E-32 T 10-10-2018 IPR036597 Fido-like domain superfamily AMQ28_09100 e52d7716d01efeca786a411a93ceddd7 376 PIRSF PIRSF038925 1 361 5.7E-113 T 10-10-2018 IPR026287 Adenosine monophosphate-protein transferase AMQ28_09100 e52d7716d01efeca786a411a93ceddd7 376 Gene3D G3DSA:1.10.3290.10 50 286 2.2E-36 T 10-10-2018 IPR036597 Fido-like domain superfamily AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 SUPERFAMILY SSF55031 181 290 2.09E-30 T 10-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 Gene3D G3DSA:3.40.630.10 12 364 9.6E-129 T 10-10-2018 AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 52.239 T 10-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 374 3.1E-168 T 10-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 Pfam PF07687 Peptidase dimerisation domain 177 284 2.2E-22 T 10-10-2018 IPR011650 Peptidase M20, dimerisation domain AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 Gene3D G3DSA:3.30.70.360 181 294 9.6E-129 T 10-10-2018 AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 SUPERFAMILY SSF53187 3 375 6.83E-63 T 10-10-2018 AMQ28_04135 550972acceb4cb543342ae3d7daf358c 378 Pfam PF01546 Peptidase family M20/M25/M40 64 373 4.9E-43 T 10-10-2018 IPR002933 Peptidase M20 GO:0016787 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 113 127 2.5E-31 T 10-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 192 214 2.5E-31 T 10-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 371 382 2.5E-31 T 10-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 234 254 2.5E-31 T 10-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 PIRSF PIRSF000185 21 447 7.3E-112 T 10-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Gene3D G3DSA:1.10.285.10 7 383 1.6E-167 T 10-10-2018 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 SMART SM00839 203 445 5.1E-87 T 10-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 SUPERFAMILY SSF51735 201 446 4.19E-76 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Gene3D G3DSA:3.40.50.720 208 372 1.6E-167 T 10-10-2018 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 SUPERFAMILY SSF53223 6 195 3.52E-73 T 10-10-2018 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 56 183 3.6E-48 T 10-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Gene3D G3DSA:3.40.50.10860 54 189 1.6E-167 T 10-10-2018 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 201 445 7.9E-86 T 10-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 Gene3D G3DSA:1.10.285.10 384 447 9.5E-12 T 10-10-2018 AMQ28_12425 1483b46ea2436afb76f9ba4484727d81 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 121 134 - T 10-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 Gene3D G3DSA:1.10.1660.10 1 133 6.8E-30 T 10-10-2018 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 SMART SM00422 8 77 1.3E-22 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 5.9E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 5.9E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 5.9E-6 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 Pfam PF00376 MerR family regulatory protein 10 46 1.9E-11 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 Pfam PF09278 MerR, DNA binding 51 113 5.3E-16 T 10-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMQ28_02580 a228351895b4eaee0b4a09754d12d4cd 138 SUPERFAMILY SSF46955 8 126 1.36E-29 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily AMQ28_04065 410f4ee2147bdf22319bc639cf11fa99 260 Gene3D G3DSA:3.40.50.620 148 228 2.8E-8 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_04065 410f4ee2147bdf22319bc639cf11fa99 260 Pfam PF02698 DUF218 domain 104 249 1.8E-28 T 10-10-2018 IPR003848 Domain of unknown function DUF218 AMQ28_01320 fed58037ecf73917916b9ac075bd87c2 277 SUPERFAMILY SSF161098 75 256 8.76E-32 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_01320 fed58037ecf73917916b9ac075bd87c2 277 Gene3D G3DSA:1.10.3720.10 71 268 3.0E-24 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_01320 fed58037ecf73917916b9ac075bd87c2 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 267 2.2E-24 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Pfam PF00072 Response regulator receiver domain 6 115 2.1E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Gene3D G3DSA:1.10.10.60 392 480 1.7E-23 T 10-10-2018 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 477 6.0E-223 T 10-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 SUPERFAMILY SSF52540 141 385 1.36E-70 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Gene3D G3DSA:1.10.8.60 313 391 5.7E-17 T 10-10-2018 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Pfam PF02954 Bacterial regulatory protein, Fis family 439 477 1.1E-14 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Gene3D G3DSA:3.40.50.2300 1 123 3.0E-39 T 10-10-2018 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 SMART SM00382 162 305 8.5E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 SMART SM00448 4 115 1.1E-35 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 SUPERFAMILY SSF52172 1 187 1.21E-43 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 SUPERFAMILY SSF46689 404 480 2.54E-18 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 460 3.2E-10 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 480 3.2E-10 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Gene3D G3DSA:3.40.50.300 127 312 1.0E-66 T 10-10-2018 AMQ28_13805 8898cf90816ed0a18bdf9ae17ec7b03b 492 Pfam PF00158 Sigma-54 interaction domain 142 309 6.0E-71 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 Gene3D G3DSA:3.40.50.1260 10 389 1.5E-154 T 10-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 3.1E-78 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 Gene3D G3DSA:3.40.50.1260 165 383 1.5E-154 T 10-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 10-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 PIRSF PIRSF000724 1 395 6.5E-126 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 SUPERFAMILY SSF53748 2 392 8.72E-136 T 10-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 37.506 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_13945 3f2b17c614a77fd3c727870e8b5446a6 395 Pfam PF00162 Phosphoglycerate kinase 6 383 8.9E-137 T 10-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 ProSitePatterns PS00855 Signal peptidases II signature. 112 124 - T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 Pfam PF01252 Signal peptidase (SPase) II 24 165 6.1E-38 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 TIGRFAM TIGR00077 lspA: signal peptidase II 17 172 6.2E-43 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 15 170 17.719 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 109 124 3.7E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 3.7E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_08240 1c32c73cf694f9feb2daf585fdcfd2fb 180 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 61 69 3.7E-19 T 10-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 SMART SM00798 133 456 2.4E-203 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 524 44.905 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 SUPERFAMILY SSF53927 212 524 1.3E-127 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 455 1.9E-115 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Gene3D G3DSA:3.40.140.20 387 524 8.3E-60 T 10-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 SUPERFAMILY SSF52335 3 192 6.67E-71 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Pfam PF02142 MGS-like domain 15 128 8.1E-31 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 SMART SM00851 15 128 1.2E-61 T 10-10-2018 IPR011607 Methylglyoxal synthase-like domain AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 524 6.3E-233 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Gene3D G3DSA:3.40.50.1380 1 196 3.1E-84 T 10-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 PIRSF PIRSF000414 1 524 2.6E-218 T 10-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_13765 1c7182f4ab4478322d41cd605f3a2463 524 Gene3D G3DSA:3.40.140.20 209 364 2.3E-55 T 10-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 Gene3D G3DSA:3.40.50.1100 70 400 1.9E-185 T 10-10-2018 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 SUPERFAMILY SSF53686 19 404 3.67E-150 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 97 111 - T 10-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 23 405 2.8E-190 T 10-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 Gene3D G3DSA:3.40.50.1100 26 222 1.9E-185 T 10-10-2018 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 69 394 3.6E-48 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 18 407 52.119 T 10-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11070 87e54bf5db1753e84cc255c6d47a3c71 414 PIRSF PIRSF001413 3 413 3.8E-166 T 10-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 Gene3D G3DSA:3.30.420.10 1 160 7.9E-53 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 Pfam PF00075 RNase H 4 136 4.0E-42 T 10-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 SUPERFAMILY SSF53098 234 407 2.53E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 241 425 1.4E-54 T 10-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 238 463 7.3E-78 T 10-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 SMART SM00479 238 408 3.1E-37 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 Pfam PF00929 Exonuclease 240 399 4.9E-30 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 Hamap MF_00042 Ribonuclease H [rnhA]. 2 145 27.013 T 10-10-2018 IPR022892 Ribonuclease HI GO:0004523 AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 SUPERFAMILY SSF53098 4 139 3.16E-48 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_12570 b0b35155e8bee426395bba88df71c4f2 466 Gene3D G3DSA:3.30.420.10 236 412 7.8E-48 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_12775 81768efceb53eaa3728b91e092ee4681 166 SUPERFAMILY SSF64288 5 156 1.73E-37 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMQ28_12775 81768efceb53eaa3728b91e092ee4681 166 Pfam PF04345 Chorismate lyase 12 150 3.8E-18 T 10-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 AMQ28_12775 81768efceb53eaa3728b91e092ee4681 166 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 1 156 20.185 T 10-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 AMQ28_12775 81768efceb53eaa3728b91e092ee4681 166 Gene3D G3DSA:3.40.1410.10 2 156 9.3E-34 T 10-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 Gene3D G3DSA:1.10.287.130 184 303 1.0E-12 T 10-10-2018 AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 SMART SM00388 238 307 3.0E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 Gene3D G3DSA:3.30.565.10 304 451 2.2E-16 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 439 2.0E-13 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 306 1.1E-9 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 SUPERFAMILY SSF47384 226 306 2.94E-12 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 SUPERFAMILY SSF55874 314 442 1.17E-18 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_07545 2dcee7e5ca87e5f67f3abd1b37b9b1f6 462 SMART SM00387 351 455 1.1E-12 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Pfam PF06827 Zinc finger found in FPG and IleRS 907 934 6.9E-6 T 10-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 36 650 2.2E-203 T 10-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Pfam PF08264 Anticodon-binding domain of tRNA 698 853 4.3E-27 T 10-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Gene3D G3DSA:3.40.50.620 34 642 4.2E-231 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 11 938 21.008 T 10-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 67 78 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 24 853 2.8E-274 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 SUPERFAMILY SSF52374 11 661 4.1E-137 T 10-10-2018 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 SUPERFAMILY SSF50677 213 416 6.07E-50 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Gene3D G3DSA:3.90.740.10 204 421 4.2E-231 T 10-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 574 583 2.7E-32 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 60 71 2.7E-32 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 246 269 2.7E-32 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 540 553 2.7E-32 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 414 429 2.7E-32 T 10-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 Gene3D G3DSA:1.10.730.20 653 937 6.0E-87 T 10-10-2018 AMQ28_08245 fac055f4be8c39b5457b40324c173367 948 SUPERFAMILY SSF47323 665 934 5.61E-72 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82866 830 1021 8.63E-39 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:1.20.1640.10 9 509 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82866 301 498 3.01E-47 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82693 39 132 5.76E-27 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82693 669 844 1.2E-12 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.70.1440 666 861 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:1.20.1640.10 510 1018 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82714 183 273 4.97E-20 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82693 137 331 2.62E-22 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Pfam PF00873 AcrB/AcrD/AcrF family 3 1022 0.0 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.70.1430 39 814 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 5.9E-100 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.70.1430 564 665 0.0 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82693 562 668 4.6E-22 T 10-10-2018 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1029 0.0 T 10-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 SUPERFAMILY SSF82714 720 804 2.09E-16 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_03655 0e1e700d396a54cfb09c80e14db05b37 1031 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_00320 d20cb1e6026c6f08502df7422f106fb6 203 SUPERFAMILY SSF53254 1 195 1.71E-43 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_00320 d20cb1e6026c6f08502df7422f106fb6 203 Gene3D G3DSA:3.40.50.1240 1 202 3.3E-42 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_00320 d20cb1e6026c6f08502df7422f106fb6 203 SMART SM00855 3 164 2.5E-10 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_00320 d20cb1e6026c6f08502df7422f106fb6 203 PIRSF PIRSF000709 3 192 5.5E-5 T 10-10-2018 AMQ28_00320 d20cb1e6026c6f08502df7422f106fb6 203 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 195 8.5E-39 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 SUPERFAMILY SSF63411 32 247 4.58E-60 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 Pfam PF05193 Peptidase M16 inactive domain 196 375 2.2E-29 T 10-10-2018 IPR007863 Peptidase M16, C-terminal AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 SUPERFAMILY SSF63411 259 446 6.7E-27 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 Gene3D G3DSA:3.30.830.10 28 249 2.8E-79 T 10-10-2018 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 63 86 - T 10-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 Gene3D G3DSA:3.30.830.10 253 444 9.0E-41 T 10-10-2018 AMQ28_00135 4402e08dcd98bb0d27700279388da4ee 450 Pfam PF00675 Insulinase (Peptidase family M16) 42 187 3.7E-25 T 10-10-2018 IPR011765 Peptidase M16, N-terminal AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 833 23.108 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 SMART SM00563 318 445 9.3E-23 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 47 824 2.3E-294 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 PIRSF PIRSF000437 41 841 8.4E-221 T 10-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 SUPERFAMILY SSF69593 258 501 3.53E-25 T 10-10-2018 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 PIRSF PIRSF500064 32 839 8.9E-227 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMQ28_10130 adf5119ba1f148740591a113b3c562b3 858 Pfam PF01553 Acyltransferase 301 440 1.6E-19 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 PRINTS PR00061 Ribosomal protein L19 signature 91 116 6.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 PRINTS PR00061 Ribosomal protein L19 signature 7 36 6.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 PRINTS PR00061 Ribosomal protein L19 signature 37 66 6.9E-41 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 PIRSF PIRSF002191 1 124 1.9E-50 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 10-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 Pfam PF01245 Ribosomal protein L19 7 116 4.0E-50 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 SUPERFAMILY SSF50104 5 119 2.81E-46 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 7 116 1.4E-49 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 5 117 31.046 T 10-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09895 47fb045f49dcb08a9d6c863933c5ab96 124 Gene3D G3DSA:2.30.30.790 15 121 5.3E-15 T 10-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02555 e9020d5b6ae4543a77a1e6d79ea23abc 244 SUPERFAMILY SSF118196 2 231 5.62E-66 T 10-10-2018 IPR036413 YaeB-like superfamily AMQ28_02555 e9020d5b6ae4543a77a1e6d79ea23abc 244 Gene3D G3DSA:2.40.30.70 22 151 4.0E-45 T 10-10-2018 IPR036414 YaeB, N-terminal domain superfamily AMQ28_02555 e9020d5b6ae4543a77a1e6d79ea23abc 244 Pfam PF01980 Uncharacterised protein family UPF0066 21 147 7.7E-41 T 10-10-2018 IPR023370 YaeB-like, N-terminal domain AMQ28_02555 e9020d5b6ae4543a77a1e6d79ea23abc 244 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 153 3.0E-38 T 10-10-2018 IPR023370 YaeB-like, N-terminal domain AMQ28_02555 e9020d5b6ae4543a77a1e6d79ea23abc 244 Gene3D G3DSA:3.30.2310.10 152 235 2.2E-11 T 10-10-2018 AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 Gene3D G3DSA:3.30.300.20 2 111 5.5E-36 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 4.5E-26 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 117 25.202 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 SUPERFAMILY SSF89919 1 119 5.63E-32 T 10-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 104 8.0E-48 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMQ28_06570 5bc9a13019a47559f94793b9d033af93 135 Pfam PF02033 Ribosome-binding factor A 6 114 7.8E-31 T 10-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 10-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 Gene3D G3DSA:3.40.50.1220 184 310 4.4E-54 T 10-10-2018 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 SMART SM00893 3 182 2.2E-53 T 10-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 PIRSF PIRSF000089 1 310 1.4E-101 T 10-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 Pfam PF01012 Electron transfer flavoprotein domain 4 168 6.7E-39 T 10-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 SUPERFAMILY SSF52402 2 186 1.84E-57 T 10-10-2018 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 Gene3D G3DSA:3.40.50.620 2 183 1.1E-55 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 3.9E-34 T 10-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMQ28_03295 a27a47e3db2cf76d3a40855ae379d8e8 310 SUPERFAMILY SSF52467 189 309 2.37E-44 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 SUPERFAMILY SSF52507 6 186 3.53E-61 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 9 410 2.7E-142 T 10-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 SUPERFAMILY SSF102645 198 415 4.84E-73 T 10-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 Gene3D G3DSA:3.40.50.1950 4 194 1.5E-57 T 10-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 Gene3D G3DSA:3.40.50.10300 197 418 7.2E-76 T 10-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 199 382 7.3E-70 T 10-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMQ28_10625 49462a1038c0e36cc4646c2fd2ea1aa5 422 Pfam PF02441 Flavoprotein 11 183 2.8E-46 T 10-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 Gene3D G3DSA:3.40.50.880 1 205 5.4E-75 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 SUPERFAMILY SSF52317 2 203 1.86E-56 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 203 2.0E-68 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 Pfam PF00117 Glutamine amidotransferase class-I 6 200 9.6E-21 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 PIRSF PIRSF000495 2 205 2.0E-69 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMQ28_09185 92dbedeb190a6ee1730bff05c311a44a 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 203 34.433 T 10-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF00072 Response regulator receiver domain 1335 1446 2.0E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF01584 CheW-like domain 1174 1309 1.4E-18 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1032 1167 4.8E-18 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF50341 1168 1305 1.24E-18 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:3.30.565.10 982 1168 2.0E-54 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF47226 685 755 2.36E-14 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF47226 23 120 2.09E-22 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00073 679 780 1.4E-4 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00073 193 287 0.063 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00073 23 120 1.0E-5 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00073 502 599 1.0E-8 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:2.40.50.180 1192 1261 5.9E-31 T 10-10-2018 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF47226 193 303 4.19E-17 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF47226 501 611 2.36E-23 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:1.20.120.160 16 115 3.5E-21 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF55874 986 1166 6.68E-36 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SUPERFAMILY SSF52172 1334 1451 1.42E-37 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:3.40.50.12740 1333 1454 2.3E-39 T 10-10-2018 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00260 1161 1307 7.7E-21 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF01627 Hpt domain 25 93 4.8E-12 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF01627 Hpt domain 504 590 5.1E-13 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF01627 Hpt domain 685 749 2.6E-9 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Pfam PF01627 Hpt domain 196 268 2.4E-10 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00387 1028 1169 9.6E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM01231 846 983 2.5E-8 T 10-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1153 1166 1.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1073 1087 1.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1129 1147 1.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1113 1123 1.0E-13 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 SMART SM00448 1333 1446 2.1E-36 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:1.20.120.160 500 641 1.2E-22 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:2.30.30.40 1169 1302 5.9E-31 T 10-10-2018 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:1.20.120.160 679 792 2.3E-14 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_04145 08720d5c0d4bb252407e3fa924696a4e 1455 Gene3D G3DSA:1.20.120.160 190 317 2.6E-16 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 144 1.4E-11 T 10-10-2018 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Gene3D G3DSA:3.30.1370.100 508 603 1.1E-51 T 10-10-2018 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 SMART SM01340 220 338 1.2E-52 T 10-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 8 648 26.712 T 10-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 100 106 - T 10-10-2018 IPR014762 DNA mismatch repair, conserved site AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Gene3D G3DSA:3.30.230.10 225 337 1.2E-35 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 SUPERFAMILY SSF54211 205 338 9.1E-34 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 SMART SM00853 464 608 1.0E-43 T 10-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 SUPERFAMILY SSF55874 8 209 1.06E-49 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 221 337 4.0E-36 T 10-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Gene3D G3DSA:3.30.565.10 9 223 4.4E-63 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 SUPERFAMILY SSF118116 459 650 7.32E-55 T 10-10-2018 IPR037198 MutL, C-terminal domain superfamily AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Gene3D G3DSA:2.30.42.20 466 645 1.1E-51 T 10-10-2018 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 Pfam PF08676 MutL C terminal dimerisation domain 460 608 1.6E-43 T 10-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMQ28_01790 7c5f67c057c0d79298a12d9f40d8a1d4 652 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 9 318 1.4E-94 T 10-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AMQ28_00740 333d9ab3f0f442052c4f9c9307f13f02 364 Pfam PF16113 Enoyl-CoA hydratase/isomerase 27 341 1.7E-98 T 10-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMQ28_00740 333d9ab3f0f442052c4f9c9307f13f02 364 SUPERFAMILY SSF52096 17 335 1.65E-61 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_00740 333d9ab3f0f442052c4f9c9307f13f02 364 Gene3D G3DSA:3.90.226.10 12 363 1.4E-97 T 10-10-2018 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 SUPERFAMILY SSF102114 49 313 5.36E-66 T 10-10-2018 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 SMART SM00729 81 286 6.0E-21 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 PIRSF PIRSF005963 1 334 8.4E-128 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 33 70 5.7E-7 T 10-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 Pfam PF04055 Radical SAM superfamily 88 249 7.1E-15 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 Gene3D G3DSA:3.20.20.70 81 294 4.3E-22 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 Hamap MF_00206 Lipoyl synthase [lipA]. 1 322 149.892 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_02905 62c06ef1eda1f7775788291f2b984d5a 337 TIGRFAM TIGR00510 lipA: lipoyl synthase 31 310 5.9E-122 T 10-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 PIRSF PIRSF009283 1 349 8.7E-109 T 10-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 348 1.3E-114 T 10-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 267 1.7E-19 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 5 128 9.6E-51 T 10-10-2018 AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 Gene3D G3DSA:3.10.180.10 2 147 4.0E-43 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 Gene3D G3DSA:3.10.180.10 148 349 6.5E-70 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_00460 eeb424f41d0be1db2eed63ab55e9a34a 353 SUPERFAMILY SSF54593 5 335 1.88E-76 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_10795 b99e3e1de5181ff7046827fe96cd7f14 484 Pfam PF02233 NAD(P) transhydrogenase beta subunit 10 477 2.8E-182 T 10-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMQ28_10795 b99e3e1de5181ff7046827fe96cd7f14 484 Gene3D G3DSA:3.40.50.1220 302 480 2.8E-81 T 10-10-2018 AMQ28_10795 b99e3e1de5181ff7046827fe96cd7f14 484 PIRSF PIRSF000204 4 481 7.5E-191 T 10-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMQ28_10795 b99e3e1de5181ff7046827fe96cd7f14 484 SUPERFAMILY SSF52467 308 480 3.27E-73 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 SMART SM00387 45 189 7.5E-28 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Gene3D G3DSA:3.30.565.10 15 232 1.5E-88 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 SUPERFAMILY SSF56719 408 817 1.99E-86 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 ProSitePatterns PS00177 DNA topoisomerase II signature. 436 444 - T 10-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 SMART SM00433 49 817 2.2E-259 T 10-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 753 813 9.8E-30 T 10-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 519 536 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 501 517 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 282 295 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 434 448 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 539 551 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 756 772 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 49 64 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 84 97 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR00418 DNA topoisomerase II family signature 127 141 1.6E-70 T 10-10-2018 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Pfam PF00204 DNA gyrase B 234 404 1.0E-60 T 10-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Gene3D G3DSA:3.30.230.10 233 412 3.6E-70 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 19 29 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 326 342 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 194 209 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 256 274 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 484 493 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 209 222 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 777 789 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 233 255 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 388 408 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 374 388 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 PRINTS PR01159 DNA gyrase subunit B signature 793 809 7.2E-79 T 10-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Gene3D G3DSA:3.40.50.670 711 822 7.2E-26 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Gene3D G3DSA:3.40.50.670 413 584 1.5E-72 T 10-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 19 819 2.8E-298 T 10-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Pfam PF01751 Toprim domain 433 545 2.8E-17 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 SUPERFAMILY SSF55874 19 231 2.49E-70 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 16 823 100.173 T 10-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 186 9.7E-22 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_08080 ae40b6b12066f0fbb4335db72bf69c9f 823 SUPERFAMILY SSF54211 234 406 4.17E-57 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 5 163 27.615 T 10-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 Gene3D G3DSA:3.30.70.3270 31 174 4.4E-41 T 10-10-2018 AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 14 137 5.2E-48 T 10-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 SUPERFAMILY SSF54862 40 160 1.72E-27 T 10-10-2018 AMQ28_04530 f4f6e82cc24acc2a4093cafd0fca6761 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 7.8E-12 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMQ28_11900 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_11900 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_13990 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_13990 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_07345 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07345 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_10735 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_10735 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_09245 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09245 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_04310 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_04310 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_01205 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_01205 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_00030 e133fa5c56ab57e96bd36baf7203157c 158 SUPERFAMILY SSF46689 15 133 1.13E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00030 e133fa5c56ab57e96bd36baf7203157c 158 Pfam PF13565 Homeodomain-like domain 58 129 1.3E-8 T 10-10-2018 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 Gene3D G3DSA:1.10.287.130 176 289 7.5E-20 T 10-10-2018 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 444 3.6E-21 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 SUPERFAMILY SSF47384 210 288 1.43E-14 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 Gene3D G3DSA:3.30.565.10 290 444 2.1E-32 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 SMART SM00387 336 445 3.6E-28 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 SUPERFAMILY SSF55874 280 443 8.51E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 1.8E-8 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 423 1.8E-8 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 288 1.4E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_02535 67f839a47f3d513c3a93eccc6650dc42 447 SMART SM00388 227 290 2.3E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 Gene3D G3DSA:3.30.70.580 1 66 6.0E-18 T 10-10-2018 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 7 176 6.3E-47 T 10-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 SUPERFAMILY SSF55120 3 189 1.12E-36 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 Pfam PF00849 RNA pseudouridylate synthase 3 147 4.2E-11 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 38 52 - T 10-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMQ28_12985 7e8eecad96ca97275c53e4395ee81663 273 Gene3D G3DSA:3.30.70.1560 67 166 3.9E-39 T 10-10-2018 AMQ28_07980 316f05bfc630b79d52809687f1a97e94 356 Pfam PF07859 alpha/beta hydrolase fold 123 328 7.6E-60 T 10-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMQ28_07980 316f05bfc630b79d52809687f1a97e94 356 SUPERFAMILY SSF53474 79 334 1.67E-57 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_07980 316f05bfc630b79d52809687f1a97e94 356 Gene3D G3DSA:3.40.50.1820 45 350 5.7E-72 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 1.2E-31 T 10-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 99 2.0E-16 T 10-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 SUPERFAMILY SSF54736 50 121 1.67E-25 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 49 1.4E-16 T 10-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 SUPERFAMILY SSF48300 4 57 3.01E-14 T 10-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 3.2E-46 T 10-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 24.605 T 10-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 Gene3D G3DSA:3.30.1390.10 51 121 5.0E-33 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMQ28_09420 8cdd82f8eeed375ef45527e726c40f7d 121 Gene3D G3DSA:1.20.5.710 2 50 2.2E-19 T 10-10-2018 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 SMART SM00729 44 251 2.0E-40 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 TIGRFAM TIGR00433 bioB: biotin synthase 15 311 1.3E-121 T 10-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 SMART SM00876 221 313 9.4E-41 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 Gene3D G3DSA:3.20.20.70 5 316 1.8E-128 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 Pfam PF04055 Radical SAM superfamily 51 207 1.3E-12 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 SUPERFAMILY SSF102114 6 312 8.63E-88 T 10-10-2018 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 Hamap MF_01694 Biotin synthase [bioB]. 6 314 42.141 T 10-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 PIRSF PIRSF001619 1 320 2.5E-138 T 10-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMQ28_13440 cac5d75bcaa61c11717962184e59194b 330 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 221 311 1.4E-18 T 10-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMQ28_08440 187d07303a55feb1f865d02bfc45595d 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.3E-49 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMQ28_08440 187d07303a55feb1f865d02bfc45595d 146 SUPERFAMILY SSF69500 1 144 4.19E-53 T 10-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AMQ28_08440 187d07303a55feb1f865d02bfc45595d 146 Gene3D G3DSA:3.50.80.10 1 145 3.5E-52 T 10-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily AMQ28_08440 187d07303a55feb1f865d02bfc45595d 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 31.77 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMQ28_08440 187d07303a55feb1f865d02bfc45595d 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 7.4E-54 T 10-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AMQ28_06905 e5009b3add87091fca775848e487ca7e 174 SUPERFAMILY SSF50324 3 173 3.4E-67 T 10-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMQ28_06905 e5009b3add87091fca775848e487ca7e 174 Gene3D G3DSA:3.90.80.10 1 174 1.1E-71 T 10-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMQ28_06905 e5009b3add87091fca775848e487ca7e 174 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 10-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMQ28_06905 e5009b3add87091fca775848e487ca7e 174 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.157 T 10-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMQ28_06905 e5009b3add87091fca775848e487ca7e 174 Pfam PF00719 Inorganic pyrophosphatase 18 173 6.0E-53 T 10-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMQ28_00355 074d39b588d0786b8ae262bacb5e6dde 99 Pfam PF01527 Transposase 3 77 1.6E-14 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_00355 074d39b588d0786b8ae262bacb5e6dde 99 Gene3D G3DSA:1.10.10.60 9 96 8.0E-12 T 10-10-2018 AMQ28_00355 074d39b588d0786b8ae262bacb5e6dde 99 SUPERFAMILY SSF46689 4 97 7.7E-20 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09635 074d39b588d0786b8ae262bacb5e6dde 99 Pfam PF01527 Transposase 3 77 1.6E-14 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_09635 074d39b588d0786b8ae262bacb5e6dde 99 Gene3D G3DSA:1.10.10.60 9 96 8.0E-12 T 10-10-2018 AMQ28_09635 074d39b588d0786b8ae262bacb5e6dde 99 SUPERFAMILY SSF46689 4 97 7.7E-20 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07390 074d39b588d0786b8ae262bacb5e6dde 99 Pfam PF01527 Transposase 3 77 1.6E-14 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_07390 074d39b588d0786b8ae262bacb5e6dde 99 Gene3D G3DSA:1.10.10.60 9 96 8.0E-12 T 10-10-2018 AMQ28_07390 074d39b588d0786b8ae262bacb5e6dde 99 SUPERFAMILY SSF46689 4 97 7.7E-20 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 PRINTS PR01650 Bacterial translocase SecE signature 66 87 8.8E-17 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 PRINTS PR01650 Bacterial translocase SecE signature 111 131 8.8E-17 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 PRINTS PR01650 Bacterial translocase SecE signature 87 107 8.8E-17 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 PRINTS PR01650 Bacterial translocase SecE signature 131 146 8.8E-17 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 Gene3D G3DSA:1.20.5.1030 88 144 6.0E-16 T 10-10-2018 IPR038379 SecE superfamily AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 143 12.109 T 10-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 145 1.6E-17 T 10-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 93 121 - T 10-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_09395 a938c302e1119dc5e022c1df65893baf 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 94 144 6.3E-17 T 10-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 Gene3D G3DSA:3.40.228.10 198 425 3.3E-71 T 10-10-2018 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 26 776 7.0E-284 T 10-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 Pfam PF00384 Molybdopterin oxidoreductase 122 499 9.6E-28 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 PIRSF PIRSF000144 7 781 0.0 T 10-10-2018 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 Gene3D G3DSA:3.40.50.740 134 502 3.3E-71 T 10-10-2018 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 SUPERFAMILY SSF53706 60 644 1.57E-143 T 10-10-2018 AMQ28_03525 11637c694c04aeec08a9ae05967ed3b9 794 SUPERFAMILY SSF50692 664 780 1.88E-11 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMQ28_01665 655d86671d000f2cb214af3003bb0c24 376 SUPERFAMILY SSF52096 13 346 1.53E-51 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_01665 655d86671d000f2cb214af3003bb0c24 376 Gene3D G3DSA:3.90.226.10 13 353 6.3E-87 T 10-10-2018 AMQ28_01665 655d86671d000f2cb214af3003bb0c24 376 Pfam PF16113 Enoyl-CoA hydratase/isomerase 24 341 8.3E-83 T 10-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMQ28_10915 098c5fc81a9b0a81a8e532aabe05d0a5 330 Pfam PF13439 Glycosyltransferase Family 4 13 144 1.4E-13 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMQ28_10915 098c5fc81a9b0a81a8e532aabe05d0a5 330 Pfam PF00534 Glycosyl transferases group 1 155 290 2.5E-25 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_10915 098c5fc81a9b0a81a8e532aabe05d0a5 330 Gene3D G3DSA:3.40.50.2000 156 298 8.3E-35 T 10-10-2018 AMQ28_10915 098c5fc81a9b0a81a8e532aabe05d0a5 330 SUPERFAMILY SSF53756 13 328 1.71E-61 T 10-10-2018 AMQ28_10915 098c5fc81a9b0a81a8e532aabe05d0a5 330 Gene3D G3DSA:3.40.50.2000 1 155 3.9E-20 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82714 733 819 9.68E-16 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82866 300 486 4.58E-37 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.70.1430 42 827 1.8E-252 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.70.1440 680 879 1.8E-252 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 3.3E-22 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 3.3E-22 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 3.3E-22 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 3.3E-22 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 3.3E-22 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.2090.10 731 819 1.8E-252 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.2090.10 181 270 1.8E-252 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82714 187 266 1.03E-12 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:1.20.1640.10 527 1031 1.8E-252 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82693 581 672 9.94E-7 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:1.20.1640.10 13 506 1.8E-252 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82866 815 1039 2.49E-45 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Pfam PF00873 AcrB/AcrD/AcrF family 7 1032 5.6E-165 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82693 139 325 3.66E-16 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.70.1320 138 328 1.8E-252 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 SUPERFAMILY SSF82693 42 138 2.09E-18 T 10-10-2018 AMQ28_07860 1818fd432f699df2a0968a5c5f2738ea 1044 Gene3D G3DSA:3.30.70.1430 581 679 1.8E-252 T 10-10-2018 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 Gene3D G3DSA:3.10.20.10 26 111 1.7E-7 T 10-10-2018 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 Gene3D G3DSA:3.40.140.10 118 262 1.5E-44 T 10-10-2018 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 SUPERFAMILY SSF53927 6 258 1.86E-71 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 4 262 30.172 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 PIRSF PIRSF015626 3 261 7.3E-72 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 20 259 1.8E-62 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMQ28_03520 994af169d9eba8f0490d4b3b96d51086 262 Pfam PF02634 FdhD/NarQ family 24 259 1.1E-63 T 10-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 Gene3D G3DSA:1.10.10.1330 121 269 1.6E-21 T 10-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 Pfam PF04963 Sigma-54 factor, core binding domain 119 312 6.7E-53 T 10-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 6 48 1.6E-13 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 464 471 - T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 Pfam PF04552 Sigma-54, DNA binding domain 326 483 5.9E-67 T 10-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 PIRSF PIRSF000774 1 485 1.6E-141 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 483 5.2E-151 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 373 392 - T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 PRINTS PR00045 Sigma-54 factor signature 385 397 2.2E-32 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 PRINTS PR00045 Sigma-54 factor signature 196 213 2.2E-32 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 PRINTS PR00045 Sigma-54 factor signature 459 477 2.2E-32 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 PRINTS PR00045 Sigma-54 factor signature 401 412 2.2E-32 T 10-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMQ28_05160 7cf8e01eed28df0868322c0840934460 486 Gene3D G3DSA:1.10.10.60 426 484 6.0E-24 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Gene3D G3DSA:3.40.50.300 1 223 1.7E-13 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Pfam PF07085 DRTGG domain 233 344 6.1E-21 T 10-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 SUPERFAMILY SSF52540 1 239 1.27E-18 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Gene3D G3DSA:3.40.1390.20 224 366 3.9E-14 T 10-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 SUPERFAMILY SSF75138 229 353 7.65E-19 T 10-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Gene3D G3DSA:3.40.50.10750 527 680 2.0E-129 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 SUPERFAMILY SSF53659 392 708 1.89E-88 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 405 704 3.9E-128 T 10-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Gene3D G3DSA:3.40.50.10950 398 707 2.0E-129 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Pfam PF01515 Phosphate acetyl/butaryl transferase 390 704 2.5E-118 T 10-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 Pfam PF13500 AAA domain 2 226 2.5E-25 T 10-10-2018 AMQ28_05490 765ac76c18ad53cdd57c1680acfb9458 713 PIRSF PIRSF006107 1 712 0.0 T 10-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 Gene3D G3DSA:3.40.50.1970 1 188 1.1E-56 T 10-10-2018 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 Gene3D G3DSA:1.20.1090.10 190 394 1.1E-55 T 10-10-2018 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 177 205 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 SUPERFAMILY SSF56796 5 394 5.23E-108 T 10-10-2018 AMQ28_12015 869808a0db6812095b5c9034fab01edc 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 385 2.0E-106 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMQ28_05405 3c1d81a1fee473d7d6e695fe2e60903b 354 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 44 198 3.5E-38 T 10-10-2018 IPR017482 Putative phage-type endonuclease AMQ28_05405 3c1d81a1fee473d7d6e695fe2e60903b 354 SUPERFAMILY SSF52980 43 232 2.36E-33 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_05405 3c1d81a1fee473d7d6e695fe2e60903b 354 Gene3D G3DSA:3.90.320.10 44 249 2.3E-38 T 10-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMQ28_05405 3c1d81a1fee473d7d6e695fe2e60903b 354 Pfam PF09588 YqaJ-like viral recombinase domain 47 189 3.0E-34 T 10-10-2018 IPR019080 YqaJ viral recombinase AMQ28_09965 e90f1eda9696594d5c0d79fc1c97b661 181 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 46 181 1.5E-33 T 10-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMQ28_09965 e90f1eda9696594d5c0d79fc1c97b661 181 Gene3D G3DSA:2.60.40.200 31 181 8.2E-52 T 10-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMQ28_09965 e90f1eda9696594d5c0d79fc1c97b661 181 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 76 86 - T 10-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMQ28_09965 e90f1eda9696594d5c0d79fc1c97b661 181 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 170 181 - T 10-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMQ28_09965 e90f1eda9696594d5c0d79fc1c97b661 181 SUPERFAMILY SSF49329 35 181 1.09E-45 T 10-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 339 358 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 304 330 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 86 111 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 157 179 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 PRINTS PR00173 Glutamate-aspartate symporter signature 56 76 3.6E-31 T 10-10-2018 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 48 63 - T 10-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 14 432 36.556 T 10-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 SUPERFAMILY SSF118215 21 414 1.57E-115 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 Pfam PF00375 Sodium:dicarboxylate symporter family 21 413 2.1E-106 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 307 330 - T 10-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMQ28_00295 64b09313a1ff9798615a83da637fa9e4 432 Gene3D G3DSA:1.10.3860.10 9 430 2.0E-119 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 Pfam PF00072 Response regulator receiver domain 4 116 2.3E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 Gene3D G3DSA:3.40.50.12740 2 209 1.4E-60 T 10-10-2018 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.9E-7 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.9E-7 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.9E-7 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 SMART SM00421 146 203 9.7E-15 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 SUPERFAMILY SSF52172 2 132 4.27E-34 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 SMART SM00448 2 115 3.7E-30 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 SUPERFAMILY SSF46894 137 209 2.65E-19 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_06790 e05746bf68a056c360a9ffb8c921e68f 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 9.6E-15 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 SUPERFAMILY SSF53738 264 370 7.85E-21 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 11 137 9.3E-29 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Gene3D G3DSA:3.30.310.50 379 469 1.8E-15 T 10-10-2018 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 SUPERFAMILY SSF55957 390 464 6.1E-12 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 161 258 7.2E-22 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 98 112 8.7E-18 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 8.7E-18 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 8.7E-18 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 8.7E-18 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 SUPERFAMILY SSF53738 162 259 8.24E-24 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Gene3D G3DSA:3.40.120.10 256 376 9.7E-31 T 10-10-2018 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 264 373 7.7E-16 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Gene3D G3DSA:3.40.120.10 177 254 7.9E-23 T 10-10-2018 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Gene3D G3DSA:3.40.120.10 2 144 1.4E-34 T 10-10-2018 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 411 457 3.8E-5 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 99 108 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_11525 7d12b61466b783203b76e4524c57fc7f 474 SUPERFAMILY SSF53738 7 181 1.26E-28 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 SUPERFAMILY SSF53955 168 329 1.5E-32 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 Gene3D G3DSA:1.10.530.10 206 367 4.7E-34 T 10-10-2018 AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 SUPERFAMILY SSF53850 52 126 1.86E-5 T 10-10-2018 AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 Pfam PF01464 Transglycosylase SLT domain 213 323 5.1E-22 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 230 258 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMQ28_03615 4968a62cab70a11a8e9daf31400462be 370 Gene3D G3DSA:3.40.190.10 36 185 1.7E-12 T 10-10-2018 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 SMART SM00448 2 112 7.1E-41 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 SMART SM00862 144 223 8.1E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 Gene3D G3DSA:3.40.50.2300 1 126 1.3E-37 T 10-10-2018 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 Gene3D G3DSA:1.10.10.10 127 225 4.4E-30 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 SUPERFAMILY SSF52172 1 127 1.85E-41 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 SUPERFAMILY SSF46894 129 225 1.93E-24 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 223 3.9E-24 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_11030 4503763a52d2cfba6c7b24bbde4caa2d 228 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_08940 ef5e175e6b49fc58718d2e7736238053 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_08940 ef5e175e6b49fc58718d2e7736238053 230 Pfam PF13276 HTH-like domain 4 42 1.4E-6 T 10-10-2018 IPR025948 HTH-like domain AMQ28_08940 ef5e175e6b49fc58718d2e7736238053 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08940 ef5e175e6b49fc58718d2e7736238053 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 SMART SM00382 245 368 1.5E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 Pfam PF00437 Type II/IV secretion system protein 119 384 9.3E-88 T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 Gene3D G3DSA:3.40.50.300 220 493 1.3E-115 T 10-10-2018 AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 SUPERFAMILY SSF52540 102 490 7.23E-104 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 SUPERFAMILY SSF160246 8 70 1.65E-14 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 312 326 - T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 8 490 1.2E-209 T 10-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 Gene3D G3DSA:3.30.300.160 2 84 5.2E-6 T 10-10-2018 AMQ28_05215 b02918b36af86e9921ce3547801315c6 495 Gene3D G3DSA:3.30.450.90 85 217 1.6E-51 T 10-10-2018 AMQ28_00310 c84e8e4d32473b2e8e7981de0a98353a 172 Gene3D G3DSA:3.40.50.300 2 169 8.0E-56 T 10-10-2018 AMQ28_00310 c84e8e4d32473b2e8e7981de0a98353a 172 PIRSF PIRSF006135 1 171 1.3E-55 T 10-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMQ28_00310 c84e8e4d32473b2e8e7981de0a98353a 172 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 167 1.6E-58 T 10-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMQ28_00310 c84e8e4d32473b2e8e7981de0a98353a 172 SUPERFAMILY SSF52540 2 169 1.4E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03990 7b0b296419e44a29381ee2a8f6b06d2b 626 Gene3D G3DSA:3.30.70.270 440 620 1.1E-44 T 10-10-2018 AMQ28_03990 7b0b296419e44a29381ee2a8f6b06d2b 626 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 450 618 7.4E-40 T 10-10-2018 IPR000160 GGDEF domain AMQ28_03990 7b0b296419e44a29381ee2a8f6b06d2b 626 SUPERFAMILY SSF55073 459 620 1.49E-37 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_03990 7b0b296419e44a29381ee2a8f6b06d2b 626 SMART SM00267 443 621 3.3E-51 T 10-10-2018 IPR000160 GGDEF domain AMQ28_03990 7b0b296419e44a29381ee2a8f6b06d2b 626 Pfam PF00990 Diguanylate cyclase, GGDEF domain 455 617 5.0E-38 T 10-10-2018 IPR000160 GGDEF domain AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 Pfam PF00696 Amino acid kinase family 11 220 1.6E-22 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 2.1E-93 T 10-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 PIRSF PIRSF005650 4 242 3.5E-84 T 10-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 Gene3D G3DSA:3.40.1160.10 2 242 8.1E-66 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 241 41.278 T 10-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMQ28_13820 99ca25d649a3a3106faeb07fb7e3e0bf 242 SUPERFAMILY SSF53633 7 241 5.24E-62 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_12615 d5ca504be562fa7e989422db0256ab19 297 Gene3D G3DSA:3.40.50.1820 79 297 3.6E-7 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12615 d5ca504be562fa7e989422db0256ab19 297 SUPERFAMILY SSF53474 165 242 7.35E-7 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09675 56ce57b9538f49fbdb4eff72a77aad49 339 SUPERFAMILY SSF53850 29 335 5.44E-80 T 10-10-2018 AMQ28_09675 56ce57b9538f49fbdb4eff72a77aad49 339 Gene3D G3DSA:3.40.190.10 122 333 5.0E-128 T 10-10-2018 AMQ28_09675 56ce57b9538f49fbdb4eff72a77aad49 339 Pfam PF13531 Bacterial extracellular solute-binding protein 52 288 5.7E-39 T 10-10-2018 AMQ28_09675 56ce57b9538f49fbdb4eff72a77aad49 339 Gene3D G3DSA:3.40.190.10 35 303 5.0E-128 T 10-10-2018 AMQ28_09675 56ce57b9538f49fbdb4eff72a77aad49 339 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 22 334 9.1E-137 T 10-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMQ28_07505 29fc881018a50880190c3c7c1170a50e 290 Pfam PF00753 Metallo-beta-lactamase superfamily 14 206 3.0E-25 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_07505 29fc881018a50880190c3c7c1170a50e 290 Gene3D G3DSA:3.60.15.10 3 289 3.8E-103 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_07505 29fc881018a50880190c3c7c1170a50e 290 SMART SM00849 16 206 1.6E-24 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_07505 29fc881018a50880190c3c7c1170a50e 290 SUPERFAMILY SSF56281 16 255 1.15E-47 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_09930 6872a1868685778cf8cef7888dbbb78b 291 SUPERFAMILY SSF103481 183 281 2.88E-11 T 10-10-2018 AMQ28_09930 6872a1868685778cf8cef7888dbbb78b 291 Pfam PF00892 EamA-like transporter family 7 132 9.3E-8 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_09930 6872a1868685778cf8cef7888dbbb78b 291 Pfam PF00892 EamA-like transporter family 146 279 2.1E-17 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_01430 c359c5b68ea1645af87e7be9a506c809 244 PIRSF PIRSF009120 1 243 3.6E-105 T 10-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 AMQ28_01430 c359c5b68ea1645af87e7be9a506c809 244 Pfam PF00227 Proteasome subunit 4 183 4.1E-8 T 10-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMQ28_01430 c359c5b68ea1645af87e7be9a506c809 244 SUPERFAMILY SSF56235 2 234 1.36E-37 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_01430 c359c5b68ea1645af87e7be9a506c809 244 Gene3D G3DSA:3.60.20.10 2 237 3.6E-30 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_11890 f5bf0fe753b1c834ca43162ee2a44f93 198 Pfam PF14491 Protein of unknown function (DUF4435) 6 94 3.5E-7 T 10-10-2018 IPR029492 Domain of unknown function DUF4435 AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 2 382 48.865 T 10-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 SUPERFAMILY SSF52540 79 365 7.34E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 Gene3D G3DSA:3.40.50.300 1 217 1.2E-72 T 10-10-2018 AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 Pfam PF00270 DEAD/DEAH box helicase 27 200 2.0E-47 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 SMART SM00490 265 346 2.0E-29 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 Pfam PF00271 Helicase conserved C-terminal domain 237 346 9.3E-30 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 SMART SM00487 22 229 4.1E-56 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_02255 df2263d097c038cda6a9c0c840922cfe 383 Gene3D G3DSA:3.40.50.300 220 380 2.8E-50 T 10-10-2018 AMQ28_00680 63e3c678163ef2ba34953121fe17197e 298 SUPERFAMILY SSF51569 2 291 2.56E-66 T 10-10-2018 AMQ28_00680 63e3c678163ef2ba34953121fe17197e 298 Pfam PF00682 HMGL-like 5 276 9.0E-47 T 10-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMQ28_00680 63e3c678163ef2ba34953121fe17197e 298 Gene3D G3DSA:3.20.20.70 1 297 9.0E-120 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 Pfam PF00561 alpha/beta hydrolase fold 27 272 7.1E-16 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 PRINTS PR00412 Epoxide hydrolase signature 33 51 4.0E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 PRINTS PR00412 Epoxide hydrolase signature 262 284 4.0E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 PRINTS PR00412 Epoxide hydrolase signature 99 112 4.0E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 Gene3D G3DSA:3.40.50.1820 2 287 4.8E-40 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09445 6643501f678a6fc56fb39ef0d01c223e 289 SUPERFAMILY SSF53474 4 284 2.15E-39 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 359 371 5.7E-5 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 329 343 5.7E-5 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 343 359 5.7E-5 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 SMART SM00421 326 383 9.3E-10 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 Pfam PF00196 Bacterial regulatory proteins, luxR family 329 382 2.1E-12 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 SUPERFAMILY SSF46894 319 385 3.03E-13 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_06120 dbb3c474db9921670fd57dd2bc47f92e 390 Gene3D G3DSA:1.10.10.10 299 388 1.1E-12 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 Gene3D G3DSA:3.40.190.10 94 292 5.6E-51 T 10-10-2018 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 Gene3D G3DSA:3.40.190.10 163 267 5.6E-51 T 10-10-2018 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 SUPERFAMILY SSF53850 93 292 1.63E-35 T 10-10-2018 AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 SUPERFAMILY SSF46785 1 86 9.16E-24 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 Gene3D G3DSA:1.10.10.10 1 93 9.6E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 Pfam PF03466 LysR substrate binding domain 87 290 2.1E-38 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_06230 d2a3108be1d4cd55f1db6616b8e07aad 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.7E-22 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 SMART SM01134 73 233 3.3E-60 T 10-10-2018 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 2.9E-21 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 Gene3D G3DSA:1.10.10.10 2 53 2.9E-8 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 Gene3D G3DSA:3.30.750.70 70 134 4.8E-6 T 10-10-2018 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 SMART SM00420 6 58 3.6E-24 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 SUPERFAMILY SSF100950 75 234 4.95E-26 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 SUPERFAMILY SSF46785 6 71 1.63E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.1E-12 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.1E-12 T 10-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMQ28_12325 0f96516ddf517a357d231724a0daef6f 254 Pfam PF00455 DeoR C terminal sensor domain 75 231 1.0E-47 T 10-10-2018 IPR014036 DeoR C-terminal sensor domain AMQ28_01600 b6371e91782776dfde4ee3db547ce418 154 Gene3D G3DSA:1.10.10.10 2 153 6.3E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_01600 b6371e91782776dfde4ee3db547ce418 154 Pfam PF01047 MarR family 51 102 1.2E-5 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_01600 b6371e91782776dfde4ee3db547ce418 154 SMART SM00347 38 138 9.7E-10 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_01600 b6371e91782776dfde4ee3db547ce418 154 SUPERFAMILY SSF46785 15 152 1.75E-25 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_02440 980a288253fd7bd76ef4a66bb7a5d7d2 333 Pfam PF00962 Adenosine/AMP deaminase 10 327 6.3E-81 T 10-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 AMQ28_02440 980a288253fd7bd76ef4a66bb7a5d7d2 333 SUPERFAMILY SSF51556 5 332 2.12E-92 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_02440 980a288253fd7bd76ef4a66bb7a5d7d2 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 10 329 5.9E-127 T 10-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 AMQ28_02440 980a288253fd7bd76ef4a66bb7a5d7d2 333 Hamap MF_01962 Adenine deaminase. 6 318 89.509 T 10-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMQ28_02440 980a288253fd7bd76ef4a66bb7a5d7d2 333 Gene3D G3DSA:3.20.20.140 1 333 3.8E-109 T 10-10-2018 AMQ28_02910 9f433482e9ff059e320ce87f3575bcb7 217 PIRSF PIRSF020736 1 215 3.0E-87 T 10-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMQ28_02910 9f433482e9ff059e320ce87f3575bcb7 217 SUPERFAMILY SSF47240 10 213 5.25E-72 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_02910 9f433482e9ff059e320ce87f3575bcb7 217 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 62 210 4.0E-49 T 10-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMQ28_02910 9f433482e9ff059e320ce87f3575bcb7 217 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 10 59 2.2E-15 T 10-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AMQ28_02910 9f433482e9ff059e320ce87f3575bcb7 217 Gene3D G3DSA:1.20.1260.10 6 217 4.0E-72 T 10-10-2018 IPR012347 Ferritin-like AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 227 41.19 T 10-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 Pfam PF00318 Ribosomal protein S2 11 226 1.4E-94 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 Gene3D G3DSA:3.40.50.10490 11 221 5.9E-92 T 10-10-2018 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 160 184 - T 10-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 SUPERFAMILY SSF52313 8 234 7.46E-94 T 10-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 39 48 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 160 177 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 89 106 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 8 26 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 177 188 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 PRINTS PR00395 Ribosomal protein S2 signature 198 212 5.4E-36 T 10-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 10-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 6 228 1.7E-103 T 10-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_12860 70d1b44c060b861cb5b26f820ac47cc0 255 Gene3D G3DSA:1.10.287.610 105 152 5.9E-92 T 10-10-2018 AMQ28_09570 6532c68e5d9cc2de4f596a52a8968a91 737 Gene3D G3DSA:3.10.450.50 694 736 1.5E-8 T 10-10-2018 AMQ28_09570 6532c68e5d9cc2de4f596a52a8968a91 737 Pfam PF08378 Nuclease-related domain 311 417 2.8E-7 T 10-10-2018 IPR011528 Nuclease-related domain, NERD AMQ28_09570 6532c68e5d9cc2de4f596a52a8968a91 737 SUPERFAMILY SSF103642 716 736 4.09E-7 T 10-10-2018 AMQ28_09570 6532c68e5d9cc2de4f596a52a8968a91 737 Pfam PF02810 SEC-C motif 719 735 1.4E-9 T 10-10-2018 IPR004027 SEC-C motif AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 Gene3D G3DSA:1.10.357.10 4 225 2.9E-62 T 10-10-2018 AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 4.0E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 4.0E-8 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 Pfam PF13972 Bacterial transcriptional repressor 62 208 1.2E-35 T 10-10-2018 IPR025722 Bacterial transcriptional repressor TetR AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 SUPERFAMILY SSF46689 7 80 1.18E-16 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_05925 c77b99e8d39063380248f16eaf04846d 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.7E-12 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_08975 13b69a80a8d4d02f2130f501772201bf 290 Gene3D G3DSA:3.30.420.10 122 274 1.2E-13 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_08975 13b69a80a8d4d02f2130f501772201bf 290 Pfam PF13276 HTH-like domain 50 103 1.4E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_08975 13b69a80a8d4d02f2130f501772201bf 290 Pfam PF00665 Integrase core domain 128 242 3.6E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_08975 13b69a80a8d4d02f2130f501772201bf 290 SUPERFAMILY SSF53098 122 281 2.12E-32 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 SMART SM00490 493 577 8.2E-21 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 SUPERFAMILY SSF50249 4 166 4.63E-30 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Pfam PF17191 RecG wedge domain 6 163 1.7E-20 T 10-10-2018 IPR033454 RecG, wedge domain AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Gene3D G3DSA:3.40.50.300 198 439 1.9E-82 T 10-10-2018 AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Gene3D G3DSA:2.40.50.140 40 133 6.8E-6 T 10-10-2018 AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 22 652 8.9E-226 T 10-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 SUPERFAMILY SSF52540 282 639 4.51E-41 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 SUPERFAMILY SSF52540 188 442 1.2E-58 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Pfam PF00271 Helicase conserved C-terminal domain 468 576 1.7E-16 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Pfam PF00270 DEAD/DEAH box helicase 262 422 1.7E-17 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 Gene3D G3DSA:3.40.50.300 446 618 1.2E-52 T 10-10-2018 AMQ28_10120 f172cd4b7c57e5c696c2e7510065a1c3 681 SMART SM00487 255 448 1.3E-30 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 PIRSF PIRSF000103 1 288 1.4E-55 T 10-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 157 1.0E-37 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 Gene3D G3DSA:3.40.50.720 2 157 2.1E-40 T 10-10-2018 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 SUPERFAMILY SSF51735 4 158 2.54E-34 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 160 281 3.2E-35 T 10-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 Gene3D G3DSA:1.10.1040.10 159 290 2.9E-30 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 SUPERFAMILY SSF48179 160 286 9.64E-28 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_00055 3e53899c563e8829c51409ac25eb799d 290 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 10-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 21 201 5.3E-57 T 10-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 20 225 54.693 T 10-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 Gene3D G3DSA:3.40.190.10 22 213 1.2E-69 T 10-10-2018 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 160 181 - T 10-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 Gene3D G3DSA:3.40.190.10 112 193 1.2E-69 T 10-10-2018 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 Pfam PF01634 ATP phosphoribosyltransferase 70 221 6.0E-49 T 10-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMQ28_05140 ecc417d36431c0969a736ffad7efbaa8 231 SUPERFAMILY SSF53850 19 225 8.69E-65 T 10-10-2018 AMQ28_10095 bb9e69c4060c41d731fe1a035a47b807 96 Gene3D G3DSA:3.30.750.24 7 96 6.1E-9 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_10095 bb9e69c4060c41d731fe1a035a47b807 96 SUPERFAMILY SSF52091 9 93 1.61E-8 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_10095 bb9e69c4060c41d731fe1a035a47b807 96 Pfam PF13466 STAS domain 9 83 1.6E-11 T 10-10-2018 IPR002645 STAS domain AMQ28_09335 23c650ab9486000c2435c9f7e16dea0f 108 SMART SM00528 63 108 7.8E-13 T 10-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AMQ28_09335 23c650ab9486000c2435c9f7e16dea0f 108 Gene3D G3DSA:4.10.430.10 58 108 3.0E-17 T 10-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 AMQ28_09335 23c650ab9486000c2435c9f7e16dea0f 108 SUPERFAMILY SSF81273 67 108 5.1E-11 T 10-10-2018 AMQ28_09335 23c650ab9486000c2435c9f7e16dea0f 108 Pfam PF00816 H-NS histone family 12 101 1.0E-19 T 10-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 SUPERFAMILY SSF52833 493 605 3.98E-17 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 SUPERFAMILY SSF74863 33 142 2.48E-25 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 Pfam PF11412 Disulphide bond corrector protein DsbC 34 142 4.8E-26 T 10-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 Gene3D G3DSA:2.60.40.1250 26 156 9.4E-30 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 ProSitePatterns PS00194 Thioredoxin family active site. 516 534 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 218 419 1.4E-16 T 10-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 Gene3D G3DSA:3.40.30.10 483 611 4.2E-20 T 10-10-2018 AMQ28_08545 5567bf7e1bc360833d5093bcccac6f7a 613 Pfam PF00085 Thioredoxin 497 603 3.6E-7 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMQ28_12005 b97b0e6a14030fe993ffda5094c964e5 159 Pfam PF00588 SpoU rRNA Methylase family 2 147 9.7E-33 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMQ28_12005 b97b0e6a14030fe993ffda5094c964e5 159 PIRSF PIRSF029256 1 159 1.7E-58 T 10-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMQ28_12005 b97b0e6a14030fe993ffda5094c964e5 159 Gene3D G3DSA:3.40.1280.10 1 159 1.2E-57 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_12005 b97b0e6a14030fe993ffda5094c964e5 159 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 156 30.242 T 10-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMQ28_12005 b97b0e6a14030fe993ffda5094c964e5 159 SUPERFAMILY SSF75217 2 157 6.08E-40 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 SUPERFAMILY SSF111369 60 234 8.5E-20 T 10-10-2018 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Pfam PF13533 Biotin-lipoyl like 72 118 1.7E-8 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 349 5.7E-50 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Gene3D G3DSA:2.40.50.100 71 211 1.6E-50 T 10-10-2018 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Pfam PF13437 HlyD family secretion protein 182 271 1.2E-17 T 10-10-2018 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Gene3D G3DSA:1.10.287.470 105 175 1.6E-50 T 10-10-2018 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Gene3D G3DSA:2.40.30.170 59 291 1.6E-50 T 10-10-2018 AMQ28_04180 37acae135887ebdfb4cbc27e9397567b 368 Gene3D G3DSA:2.40.420.20 56 349 1.6E-50 T 10-10-2018 AMQ28_03870 96567056fbbd39acd70ae749c137b0a9 209 Gene3D G3DSA:3.40.50.1110 28 209 9.7E-63 T 10-10-2018 IPR036514 SGNH hydrolase superfamily AMQ28_03870 96567056fbbd39acd70ae749c137b0a9 209 SUPERFAMILY SSF52266 29 207 3.05E-44 T 10-10-2018 AMQ28_03870 96567056fbbd39acd70ae749c137b0a9 209 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 194 2.9E-21 T 10-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMQ28_10195 bdb2db6302d06bc5526bc51dfb4b8fe6 106 SUPERFAMILY SSF54189 2 91 1.8E-30 T 10-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10195 bdb2db6302d06bc5526bc51dfb4b8fe6 106 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 20.662 T 10-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMQ28_10195 bdb2db6302d06bc5526bc51dfb4b8fe6 106 Pfam PF00276 Ribosomal protein L23 9 93 1.4E-29 T 10-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMQ28_10195 bdb2db6302d06bc5526bc51dfb4b8fe6 106 Gene3D G3DSA:3.30.70.330 1 97 8.8E-33 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 SMART SM00363 98 162 2.4E-16 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 10-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 SUPERFAMILY SSF55174 2 208 1.15E-65 T 10-10-2018 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.801 T 10-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 4.2E-31 T 10-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 Pfam PF01479 S4 domain 99 145 7.3E-18 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 Gene3D G3DSA:3.10.290.10 97 193 1.5E-77 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 Gene3D G3DSA:1.10.1050.10 6 208 1.5E-77 T 10-10-2018 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 1.2E-79 T 10-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMQ28_10305 685e89f5ce8f215bb4fb167cb99304f6 208 SMART SM01390 3 97 9.4E-45 T 10-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMQ28_09510 b540bc7525216578df21df888a223d9c 505 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 495 2.6E-234 T 10-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 AMQ28_09510 b540bc7525216578df21df888a223d9c 505 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 321 464 1.3E-42 T 10-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain AMQ28_09510 b540bc7525216578df21df888a223d9c 505 SUPERFAMILY SSF100950 230 495 3.18E-83 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_09510 b540bc7525216578df21df888a223d9c 505 Gene3D G3DSA:3.40.1080.20 337 478 3.0E-40 T 10-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily AMQ28_09510 b540bc7525216578df21df888a223d9c 505 SUPERFAMILY SSF100950 4 218 2.51E-75 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_09510 b540bc7525216578df21df888a223d9c 505 Gene3D G3DSA:3.30.750.70 247 326 5.0E-6 T 10-10-2018 AMQ28_09510 b540bc7525216578df21df888a223d9c 505 Gene3D G3DSA:3.40.1080.10 13 184 6.5E-17 T 10-10-2018 AMQ28_09510 b540bc7525216578df21df888a223d9c 505 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 11 215 5.9E-31 T 10-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Gene3D G3DSA:3.30.70.2740 341 426 1.1E-26 T 10-10-2018 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 SUPERFAMILY SSF56176 9 222 4.3E-66 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Gene3D G3DSA:1.10.45.10 427 466 3.8E-14 T 10-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Gene3D G3DSA:3.30.70.2190 227 338 4.4E-26 T 10-10-2018 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Gene3D G3DSA:3.30.465.40 7 226 1.2E-67 T 10-10-2018 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Pfam PF01565 FAD binding domain 46 184 5.9E-39 T 10-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 466 1.2E-59 T 10-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMQ28_09945 7d3ae98f8d24bb79cc819c168850b340 469 SUPERFAMILY SSF55103 226 468 6.05E-62 T 10-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 10-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 Gene3D G3DSA:1.10.1200.120 3 143 1.9E-40 T 10-10-2018 IPR036019 Gated mechanosensitive channel AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 SUPERFAMILY SSF81330 12 136 1.11E-33 T 10-10-2018 IPR036019 Gated mechanosensitive channel AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 141 3.7E-35 T 10-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 7.0E-11 T 10-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 103 112 7.0E-11 T 10-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 94 102 7.0E-11 T 10-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 141 23.094 T 10-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMQ28_04760 f6a484f1747694dd54aafe8a53ae2b3a 145 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 140 7.3E-42 T 10-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L AMQ28_01020 d9d98bdda44f802343c661d62a318bb4 444 SUPERFAMILY SSF46689 10 115 6.81E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_01020 d9d98bdda44f802343c661d62a318bb4 444 SUPERFAMILY SSF53098 133 290 2.28E-17 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_01020 d9d98bdda44f802343c661d62a318bb4 444 Pfam PF13518 Helix-turn-helix domain 11 61 2.3E-7 T 10-10-2018 AMQ28_01020 d9d98bdda44f802343c661d62a318bb4 444 Gene3D G3DSA:3.30.420.10 129 303 1.3E-16 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_01020 d9d98bdda44f802343c661d62a318bb4 444 Pfam PF00665 Integrase core domain 140 260 5.2E-8 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 PRINTS PR01576 Peptide deformylase signature 37 66 7.9E-29 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 PRINTS PR01576 Peptide deformylase signature 113 131 7.9E-29 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 PRINTS PR01576 Peptide deformylase signature 101 112 7.9E-29 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 PRINTS PR01576 Peptide deformylase signature 132 161 7.9E-29 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 SUPERFAMILY SSF56420 3 160 8.77E-50 T 10-10-2018 IPR036821 Peptide deformylase superfamily AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 Gene3D G3DSA:3.90.45.10 1 161 2.9E-51 T 10-10-2018 IPR036821 Peptide deformylase superfamily AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 30 160 1.8E-39 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 Pfam PF01327 Polypeptide deformylase 6 160 3.7E-43 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 PIRSF PIRSF004749 1 161 6.7E-45 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_03920 c393e927d484d1dd260433e641ca89ec 161 Hamap MF_00163 Peptide deformylase [def]. 3 161 22.818 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07305 19878d110518f5e0af856b101a255827 394 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 85 141 2.1E-7 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMQ28_07305 19878d110518f5e0af856b101a255827 394 Pfam PF12167 Arm DNA-binding domain 1 64 3.5E-21 T 10-10-2018 IPR022000 Min27-like integrase, DNA-binding domain AMQ28_07305 19878d110518f5e0af856b101a255827 394 SUPERFAMILY SSF56349 85 373 9.12E-51 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_07305 19878d110518f5e0af856b101a255827 394 Pfam PF00589 Phage integrase family 201 364 1.9E-17 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_07305 19878d110518f5e0af856b101a255827 394 Gene3D G3DSA:1.10.443.10 185 381 6.6E-38 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_07305 19878d110518f5e0af856b101a255827 394 Gene3D G3DSA:1.10.150.130 85 184 9.6E-9 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 Pfam PF00106 short chain dehydrogenase 4 193 5.6E-54 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 Gene3D G3DSA:3.40.50.720 2 264 2.1E-60 T 10-10-2018 AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.8E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.8E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.8E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 5.7E-25 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 5.7E-25 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.7E-25 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 5.7E-25 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.7E-25 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_03455 5007346b7ce93d1bf7dcff00bdb21a1b 274 SUPERFAMILY SSF51735 3 254 7.35E-61 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 SMART SM00739 122 149 0.0085 T 10-10-2018 IPR005824 KOW AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 Gene3D G3DSA:2.30.30.30 118 175 1.2E-19 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 9.0E-16 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 9.0E-16 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 9.0E-16 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 SUPERFAMILY SSF82679 1 112 6.41E-38 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 SMART SM00738 1 110 1.3E-44 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 Pfam PF02357 Transcription termination factor nusG 2 107 4.4E-28 T 10-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 175 8.4E-63 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 176 22.656 T 10-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 Gene3D G3DSA:3.30.70.940 1 117 5.0E-46 T 10-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMQ28_09400 705d4b07f433ef5e08116859aea4dca7 177 SUPERFAMILY SSF50104 120 175 3.76E-15 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 797 841 8.63E-9 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF53955 129 288 9.9E-42 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 988 1031 1.3E-11 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 720 764 2.3E-5 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 649 690 1.1E-8 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 586 626 2.2E-7 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 918 960 1.7E-10 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 850 892 4.8E-11 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 1037 1080 3.7E-8 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01476 LysM domain 798 841 1.5E-11 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 797 841 3.0E-12 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 917 961 7.1E-9 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 719 764 0.047 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 849 893 1.7E-12 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 987 1031 2.3E-12 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 585 629 0.0044 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 648 692 1.4E-9 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SMART SM00257 1036 1080 6.5E-9 T 10-10-2018 IPR018392 LysM domain AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 647 691 9.16E-8 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:1.10.530.10 127 275 9.4E-31 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 845 903 1.1E-12 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 150 178 - T 10-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 584 628 2.62E-7 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 987 1031 9.55E-9 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 849 892 1.23E-8 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 904 973 3.5E-13 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 572 637 2.2E-10 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 705 780 1.7E-6 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 781 844 4.2E-13 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 638 704 1.7E-12 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 1034 1082 4.5E-10 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Gene3D G3DSA:3.10.350.10 974 1033 4.0E-14 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 917 960 2.22E-8 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 1035 1080 1.7E-7 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 SUPERFAMILY SSF54106 719 764 9.68E-5 T 10-10-2018 AMQ28_12575 343e57e1e159bac94409531306d13793 1082 Pfam PF01464 Transglycosylase SLT domain 137 239 1.1E-23 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 AMQ28_10715 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_08905 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_00815 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_09080 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_00535 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_02005 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 Pfam PF01842 ACT domain 10 69 9.5E-8 T 10-10-2018 IPR002912 ACT domain AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 Gene3D G3DSA:3.40.50.170 94 288 1.2E-68 T 10-10-2018 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 SUPERFAMILY SSF53328 94 288 3.92E-57 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PIRSF PIRSF036480 6 288 4.4E-111 T 10-10-2018 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 Gene3D G3DSA:3.30.70.260 5 90 1.9E-22 T 10-10-2018 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 287 43.916 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 44 56 3.5E-58 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 287 1.3E-115 T 10-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 SUPERFAMILY SSF55021 8 90 1.13E-13 T 10-10-2018 AMQ28_05920 b32196cc28c79f64b7324aaa33f64184 288 Pfam PF00551 Formyl transferase 94 269 1.7E-34 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_00875 07392c22ca788c2e15a1ecc138386478 342 SUPERFAMILY SSF51726 7 340 2.62E-70 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMQ28_00875 07392c22ca788c2e15a1ecc138386478 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 4.9E-38 T 10-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMQ28_00875 07392c22ca788c2e15a1ecc138386478 342 Gene3D G3DSA:3.20.20.210 1 342 1.2E-134 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMQ28_00875 07392c22ca788c2e15a1ecc138386478 342 PIRSF PIRSF005632 1 342 2.0E-199 T 10-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 PRINTS PR00618 DksA/TraR zinc finger signature 150 162 8.5E-5 T 10-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 PRINTS PR00618 DksA/TraR zinc finger signature 138 149 8.5E-5 T 10-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 56 164 7.1E-51 T 10-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 52 174 29.169 T 10-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 138 162 - T 10-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 SUPERFAMILY SSF57716 135 172 3.28E-10 T 10-10-2018 AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 134 167 1.1E-11 T 10-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 SUPERFAMILY SSF109635 38 134 2.62E-34 T 10-10-2018 IPR037187 DksA, N-terminal domain superfamily AMQ28_06730 93f224c03ba60a71fdd3f9b83cfdab77 175 Gene3D G3DSA:1.20.120.910 45 174 1.5E-36 T 10-10-2018 AMQ28_06055 96263ba91fa991a10fd57eefddad5c07 337 Gene3D G3DSA:1.10.10.60 229 337 1.4E-24 T 10-10-2018 AMQ28_06055 96263ba91fa991a10fd57eefddad5c07 337 Pfam PF12833 Helix-turn-helix domain 256 333 1.4E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_06055 96263ba91fa991a10fd57eefddad5c07 337 SUPERFAMILY SSF46689 284 333 1.3E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_06055 96263ba91fa991a10fd57eefddad5c07 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 1.5E-33 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_06055 96263ba91fa991a10fd57eefddad5c07 337 SMART SM00342 249 331 1.2E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 SMART SM00729 137 362 1.0E-51 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 10-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Pfam PF04055 Radical SAM superfamily 143 320 1.1E-28 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Gene3D G3DSA:3.40.50.12160 5 125 2.0E-28 T 10-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 438 5.5E-182 T 10-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Gene3D G3DSA:3.80.30.20 135 376 2.0E-71 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Pfam PF00919 Uncharacterized protein family UPF0004 5 95 1.7E-20 T 10-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 439 4.3E-104 T 10-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 SUPERFAMILY SSF102114 121 367 6.02E-52 T 10-10-2018 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 441 61.286 T 10-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMQ28_13815 c4be17fcb3e26b9eaa79dc578262d475 447 Gene3D G3DSA:2.40.50.140 377 446 1.8E-19 T 10-10-2018 AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 SUPERFAMILY SSF52833 1 83 4.0E-28 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 Pfam PF00462 Glutaredoxin 4 64 8.0E-22 T 10-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 PRINTS PR00160 Glutaredoxin signature 47 60 6.0E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 PRINTS PR00160 Glutaredoxin signature 4 22 6.0E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 PRINTS PR00160 Glutaredoxin signature 61 74 6.0E-14 T 10-10-2018 IPR014025 Glutaredoxin subgroup AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 1.2E-31 T 10-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 10-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AMQ28_05325 654fbe670abaeb110ecdd54a086186b8 84 Gene3D G3DSA:3.40.30.10 1 84 1.2E-29 T 10-10-2018 AMQ28_00695 425790c5206a5b8a172508f275717561 533 Gene3D G3DSA:3.90.226.10 272 533 4.4E-99 T 10-10-2018 AMQ28_00695 425790c5206a5b8a172508f275717561 533 Pfam PF01039 Carboxyl transferase domain 48 523 1.2E-146 T 10-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMQ28_00695 425790c5206a5b8a172508f275717561 533 SUPERFAMILY SSF52096 237 515 9.62E-83 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_00695 425790c5206a5b8a172508f275717561 533 Gene3D G3DSA:3.90.226.10 1 271 3.1E-98 T 10-10-2018 AMQ28_00695 425790c5206a5b8a172508f275717561 533 SUPERFAMILY SSF52096 22 270 1.52E-71 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 427 2.1E-161 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 Gene3D G3DSA:3.40.50.1980 31 232 1.4E-124 T 10-10-2018 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 10-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 5.3E-79 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 SUPERFAMILY SSF53720 27 428 3.33E-87 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 PIRSF PIRSF000099 2 429 1.9E-158 T 10-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 Pfam PF00815 Histidinol dehydrogenase 25 427 6.4E-169 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 428 40.627 T 10-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMQ28_05135 5d58adadc04544aba05678b97593aa33 429 Gene3D G3DSA:3.40.50.1980 234 350 1.4E-124 T 10-10-2018 AMQ28_01500 b6a32a8db7154a2d2fad9b2e32462013 284 Gene3D G3DSA:3.10.129.10 33 284 1.3E-65 T 10-10-2018 AMQ28_01500 b6a32a8db7154a2d2fad9b2e32462013 284 Pfam PF01575 MaoC like domain 174 228 9.9E-12 T 10-10-2018 IPR002539 MaoC-like dehydratase domain AMQ28_01500 b6a32a8db7154a2d2fad9b2e32462013 284 SUPERFAMILY SSF54637 170 279 2.69E-17 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_01500 b6a32a8db7154a2d2fad9b2e32462013 284 SUPERFAMILY SSF54637 34 155 1.17E-6 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_13450 284d12665059c004546291f106b394fe 511 PIRSF PIRSF017184 8 497 1.3E-100 T 10-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMQ28_13450 284d12665059c004546291f106b394fe 511 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 220 494 19.124 T 10-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMQ28_13450 284d12665059c004546291f106b394fe 511 Gene3D G3DSA:3.40.50.10260 6 213 2.2E-46 T 10-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMQ28_13450 284d12665059c004546291f106b394fe 511 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 28 206 5.5E-32 T 10-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMQ28_13450 284d12665059c004546291f106b394fe 511 SUPERFAMILY SSF64153 10 242 2.75E-49 T 10-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMQ28_13450 284d12665059c004546291f106b394fe 511 Gene3D G3DSA:3.40.1190.20 223 493 6.1E-67 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_13450 284d12665059c004546291f106b394fe 511 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 227 490 4.7E-54 T 10-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMQ28_13450 284d12665059c004546291f106b394fe 511 Pfam PF01256 Carbohydrate kinase 243 483 2.1E-45 T 10-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMQ28_13450 284d12665059c004546291f106b394fe 511 Pfam PF03853 YjeF-related protein N-terminus 33 190 7.4E-34 T 10-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMQ28_13450 284d12665059c004546291f106b394fe 511 SUPERFAMILY SSF53613 225 490 5.06E-56 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 SUPERFAMILY SSF47781 383 555 6.45E-23 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 SUPERFAMILY SSF50249 303 381 1.01E-17 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 308 381 6.4E-17 T 10-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 246 300 5.5E-6 T 10-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 41 214 1.5E-16 T 10-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Gene3D G3DSA:3.30.470.90 90 303 1.2E-21 T 10-10-2018 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Gene3D G3DSA:2.40.50.140 304 387 1.5E-17 T 10-10-2018 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 SUPERFAMILY SSF52113 566 644 1.06E-13 T 10-10-2018 IPR036420 BRCT domain superfamily AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 SUPERFAMILY SSF56091 36 299 2.47E-44 T 10-10-2018 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 PIRSF PIRSF001604 30 244 7.2E-22 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 PIRSF PIRSF001604 225 645 3.8E-100 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Hamap MF_01588 DNA ligase [ligA]. 31 644 36.95 T 10-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Gene3D G3DSA:3.40.50.10190 554 645 4.3E-23 T 10-10-2018 IPR036420 BRCT domain superfamily AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Gene3D G3DSA:1.10.150.20 409 479 3.3E-9 T 10-10-2018 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Pfam PF14520 Helix-hairpin-helix domain 421 475 8.4E-5 T 10-10-2018 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 SMART SM00532 32 425 1.9E-24 T 10-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMQ28_04935 3f89bb4db542c8c19998938cb02f983e 645 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 573 641 7.0E-10 T 10-10-2018 IPR001357 BRCT domain AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 Pfam PF00361 Proton-conducting membrane transporter 143 433 3.1E-36 T 10-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 148 167 3.9E-8 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 340 359 3.9E-8 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 394 420 3.9E-8 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 3.9E-8 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06550 e96b892705f01f11b8e3a01dd3b2521d 602 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 3.9E-8 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04325 b8e3056c4edec5368f210c3b400e27e7 75 Pfam PF13359 DDE superfamily endonuclease 2 65 2.2E-8 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_11600 b8e3056c4edec5368f210c3b400e27e7 75 Pfam PF13359 DDE superfamily endonuclease 2 65 2.2E-8 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_03315 b8e3056c4edec5368f210c3b400e27e7 75 Pfam PF13359 DDE superfamily endonuclease 2 65 2.2E-8 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_12370 e5e7a6e31d40f9eda546341a923d8cc9 199 Pfam PF01553 Acyltransferase 33 143 1.0E-7 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_12370 e5e7a6e31d40f9eda546341a923d8cc9 199 SMART SM00563 33 148 2.2E-12 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_12370 e5e7a6e31d40f9eda546341a923d8cc9 199 SUPERFAMILY SSF69593 30 152 1.29E-10 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Gene3D G3DSA:3.40.228.10 162 601 3.4E-166 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Gene3D G3DSA:2.40.40.20 615 735 5.5E-40 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 18 72 7.8E-17 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 PIRSF PIRSF036643 884 928 340.0 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 PIRSF PIRSF036643 1 756 2.2E-154 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Pfam PF01568 Molydopterin dinucleotide binding domain 618 729 4.5E-32 T 10-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Gene3D G3DSA:2.20.25.90 14 73 4.2E-15 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Gene3D G3DSA:1.10.10.1100 873 927 4.3E-5 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 SMART SM00926 17 74 5.9E-17 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Pfam PF00384 Molybdopterin oxidoreductase 77 507 3.2E-76 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Gene3D G3DSA:3.40.50.740 95 598 3.4E-166 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 SUPERFAMILY SSF53706 16 620 2.09E-178 T 10-10-2018 AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 SUPERFAMILY SSF50692 608 747 6.56E-43 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 Pfam PF04324 BFD-like [2Fe-2S] binding domain 873 922 8.5E-12 T 10-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMQ28_13565 782640244bc5f6d3b415c0e6dae1db78 930 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 22 40 - T 10-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 2.0E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 SUPERFAMILY SSF46785 4 88 6.53E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 SUPERFAMILY SSF53850 90 293 6.88E-20 T 10-10-2018 AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 Gene3D G3DSA:3.40.190.290 95 279 1.2E-20 T 10-10-2018 AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 Pfam PF03466 LysR substrate binding domain 89 291 8.8E-16 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_01525 d57745c94a08a606233cfdda5533d7f2 296 Gene3D G3DSA:1.10.10.10 1 87 4.0E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Gene3D G3DSA:1.10.268.10 370 455 9.5E-176 T 10-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Gene3D G3DSA:3.90.199.10 33 484 9.5E-176 T 10-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 596 617 2.1 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 646 690 1.0E-4 T 10-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 735 1.7E-302 T 10-10-2018 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 SUPERFAMILY SSF56719 32 484 3.66E-154 T 10-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 SUPERFAMILY SSF101904 502 735 4.05E-44 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Gene3D G3DSA:3.30.1360.40 239 332 9.5E-176 T 10-10-2018 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 1.5E-134 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 SMART SM00434 12 462 1.3E-218 T 10-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Gene3D G3DSA:2.120.10.90 502 736 5.3E-14 T 10-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMQ28_06925 e7d7726451cedbe4413781a0a27d0511 739 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 736 32.696 T 10-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 SUPERFAMILY SSF55200 96 181 3.92E-31 T 10-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 SUPERFAMILY SSF54364 17 90 1.7E-26 T 10-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 19 182 8.9E-64 T 10-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 Gene3D G3DSA:3.10.20.80 14 87 1.5E-27 T 10-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 95 180 2.9E-35 T 10-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 13 182 28.225 T 10-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 Gene3D G3DSA:3.30.110.10 88 183 3.6E-35 T 10-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMQ28_05675 38c7f7b4a55322afc39d4a33d60a1184 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 19 88 3.3E-27 T 10-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMQ28_11000 4682d168fa45e4a3c4fb10e40b7621f3 152 Pfam PF11776 Nickel/cobalt transporter regulator 121 149 2.4E-7 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_11000 4682d168fa45e4a3c4fb10e40b7621f3 152 Gene3D G3DSA:3.10.450.160 85 152 4.5E-8 T 10-10-2018 AMQ28_11000 4682d168fa45e4a3c4fb10e40b7621f3 152 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 103 151 0.005 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_08910 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_08910 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08910 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_02000 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_02000 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_02000 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09085 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09085 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09085 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00540 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00540 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00540 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00810 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00810 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00810 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_10720 2cf19d78d4eb234607106dac51fcdfa9 230 Pfam PF00665 Integrase core domain 66 176 6.6E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_10720 2cf19d78d4eb234607106dac51fcdfa9 230 SUPERFAMILY SSF53098 66 224 1.1E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_10720 2cf19d78d4eb234607106dac51fcdfa9 230 Gene3D G3DSA:3.30.420.10 61 209 8.8E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 SUPERFAMILY SSF74778 2 160 1.03E-66 T 10-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 SUPERFAMILY SSF53732 381 865 4.45E-142 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Pfam PF11791 Aconitate B N-terminal domain 4 156 4.9E-65 T 10-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Gene3D G3DSA:3.40.1060.10 387 689 3.4E-144 T 10-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 384 2.1E-90 T 10-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Gene3D G3DSA:3.30.499.10 407 534 3.4E-144 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 863 0.0 T 10-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Gene3D G3DSA:3.30.499.10 691 874 4.1E-67 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 SUPERFAMILY SSF52016 162 374 1.04E-62 T 10-10-2018 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 PIRSF PIRSF036687 1 868 0.0 T 10-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Gene3D G3DSA:1.25.40.310 1 161 4.2E-67 T 10-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 ProSitePatterns PS01244 Aconitase family signature 2. 770 783 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Gene3D G3DSA:3.20.19.10 162 363 2.1E-71 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMQ28_01200 3157c7d74e5378f1de3bd0efe4773fd6 879 Pfam PF00330 Aconitase family (aconitate hydratase) 477 827 2.2E-39 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 SUPERFAMILY SSF81271 3 61 1.99E-15 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 528 4.3E-46 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Gene3D G3DSA:3.30.930.10 222 530 2.1E-128 T 10-10-2018 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 SMART SM00863 169 218 1.0E-19 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Gene3D G3DSA:3.30.980.10 69 221 3.7E-60 T 10-10-2018 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 628 4.8E-222 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 SUPERFAMILY SSF52954 528 630 3.78E-29 T 10-10-2018 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Gene3D G3DSA:3.10.20.30 3 63 2.2E-21 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Gene3D G3DSA:3.30.54.20 130 186 3.7E-60 T 10-10-2018 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Pfam PF02824 TGS domain 4 61 3.7E-10 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Pfam PF03129 Anticodon binding domain 540 628 5.7E-19 T 10-10-2018 IPR004154 Anticodon-binding AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 4.6E-52 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 4.6E-52 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 4.6E-52 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 4.6E-52 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 4.6E-52 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 218 4.7E-14 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 SUPERFAMILY SSF55681 242 525 8.04E-99 T 10-10-2018 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Gene3D G3DSA:3.40.50.800 531 636 8.1E-28 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.415 T 10-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMQ28_05680 35f155617903420ca3e1b7f26260c863 640 SUPERFAMILY SSF55186 63 240 1.22E-63 T 10-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMQ28_01655 f44cb90836c01e539a6735c43b758c11 143 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 142 1.2E-9 T 10-10-2018 IPR019587 Polyketide cyclase/dehydrase AMQ28_01655 f44cb90836c01e539a6735c43b758c11 143 SUPERFAMILY SSF55961 1 142 1.16E-15 T 10-10-2018 AMQ28_01655 f44cb90836c01e539a6735c43b758c11 143 Gene3D G3DSA:3.30.530.20 1 143 1.0E-16 T 10-10-2018 IPR023393 START-like domain superfamily AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 Gene3D G3DSA:3.50.50.60 5 284 2.4E-78 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 SUPERFAMILY SSF51905 2 309 2.11E-38 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 283 6.4E-53 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 Gene3D G3DSA:3.30.390.120 320 384 6.5E-14 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 Gene3D G3DSA:3.50.50.60 111 248 2.4E-78 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 4.8E-24 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 4.8E-24 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 4.8E-24 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 4.8E-24 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 4.8E-24 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.2E-17 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.2E-17 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 3.2E-17 T 10-10-2018 AMQ28_03830 0b55ff7e69a5d3ea0c76c16ddbf625d9 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 237 251 3.2E-17 T 10-10-2018 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 SUPERFAMILY SSF52374 2 157 3.22E-45 T 10-10-2018 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 6.6E-48 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 6.6E-48 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 6.6E-48 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 6.6E-48 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 6.6E-48 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 Pfam PF01467 Cytidylyltransferase-like 7 135 1.6E-21 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 Gene3D G3DSA:3.40.50.620 1 163 8.9E-59 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 158 7.1E-58 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 35.056 T 10-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMQ28_12155 e6fbee79cc7a0e8a3a47a1295016bd3b 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 61 4.4E-18 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMQ28_00985 86766181938728276d6cff555da9493a 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 6.6E-14 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00985 86766181938728276d6cff555da9493a 296 Gene3D G3DSA:3.40.190.10 167 264 3.3E-51 T 10-10-2018 AMQ28_00985 86766181938728276d6cff555da9493a 296 SUPERFAMILY SSF46785 1 80 2.63E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00985 86766181938728276d6cff555da9493a 296 SUPERFAMILY SSF53850 85 292 2.02E-36 T 10-10-2018 AMQ28_00985 86766181938728276d6cff555da9493a 296 Gene3D G3DSA:3.40.190.10 87 288 3.3E-51 T 10-10-2018 AMQ28_00985 86766181938728276d6cff555da9493a 296 Gene3D G3DSA:1.10.10.10 1 83 7.5E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00985 86766181938728276d6cff555da9493a 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00985 86766181938728276d6cff555da9493a 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00985 86766181938728276d6cff555da9493a 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.6E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00985 86766181938728276d6cff555da9493a 296 Pfam PF03466 LysR substrate binding domain 91 291 2.8E-20 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 9.6E-11 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SMART SM00929 88 128 1.8E-17 T 10-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SUPERFAMILY SSF54862 82 213 1.13E-31 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Pfam PF00384 Molybdopterin oxidoreductase 568 628 5.5E-5 T 10-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 126 6.6E-14 T 10-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SUPERFAMILY SSF50692 797 878 9.72E-8 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 10-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SUPERFAMILY SSF54292 1 77 4.2E-19 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 10-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SMART SM00926 221 275 6.8E-11 T 10-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Gene3D G3DSA:2.20.25.90 221 275 4.7E-13 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 645 1.6E-198 T 10-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 74 5.0E-11 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Gene3D G3DSA:3.10.20.740 1 128 8.4E-29 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 Gene3D G3DSA:3.40.50.740 481 680 5.3E-12 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 SUPERFAMILY SSF53706 219 679 6.64E-78 T 10-10-2018 AMQ28_04540 55334f75ba684f094b40c5ebafceb8ed 894 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 10-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 162 4.3E-19 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 SUPERFAMILY SSF56935 28 741 1.45E-117 T 10-10-2018 AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 741 7.8E-80 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 Gene3D G3DSA:2.170.130.10 45 175 6.0E-38 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 Pfam PF00593 TonB dependent receptor 274 740 7.1E-48 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_05550 8baadd7804ebc0f0f369990d55d393ba 741 Gene3D G3DSA:2.40.170.20 177 741 1.9E-112 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 SUPERFAMILY SSF52540 14 257 5.33E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 Pfam PF00005 ABC transporter 303 451 3.3E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 ProSitePatterns PS00211 ABC transporters family signature. 423 437 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 SMART SM00382 38 235 2.9E-17 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 SMART SM00382 310 508 8.1E-19 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 Pfam PF00005 ABC transporter 30 185 1.4E-27 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 SUPERFAMILY SSF52540 295 522 2.25E-62 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 Gene3D G3DSA:3.40.50.300 11 272 6.9E-80 T 10-10-2018 AMQ28_12595 33515c6288d5d86de3051f26746a812a 529 Gene3D G3DSA:3.40.50.300 273 529 1.4E-77 T 10-10-2018 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 158 3.3E-29 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 Gene3D G3DSA:3.30.160.70 3 74 3.8E-17 T 10-10-2018 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 8 75 2.6E-6 T 10-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 SUPERFAMILY SSF53155 3 83 3.92E-17 T 10-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 SUPERFAMILY SSF46767 77 158 1.44E-29 T 10-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 158 40.862 T 10-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 Gene3D G3DSA:1.10.10.10 77 159 2.9E-33 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_05020 8f7b4cb715a9a0dd2e815f9e30677764 159 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 78 157 2.6E-33 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMQ28_09005 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 10-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMQ28_09005 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03400 IS1 transposase 102 220 1.4E-25 T 10-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMQ28_11295 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 10-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMQ28_11295 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03400 IS1 transposase 102 220 1.4E-25 T 10-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMQ28_06840 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 10-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMQ28_06840 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03400 IS1 transposase 102 220 1.4E-25 T 10-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMQ28_01955 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 10-10-2018 IPR003220 InsA N-terminal domain GO:0006313 AMQ28_01955 fabd65d38b9f2749a9cabaf92adf9750 233 Pfam PF03400 IS1 transposase 102 220 1.4E-25 T 10-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 Pfam PF13438 Domain of unknown function (DUF4113) 381 429 2.9E-9 T 10-10-2018 IPR025188 Domain of unknown function DUF4113 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 Gene3D G3DSA:3.30.70.270 10 165 1.1E-38 T 10-10-2018 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 SUPERFAMILY SSF56672 7 246 1.25E-60 T 10-10-2018 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 Pfam PF00817 impB/mucB/samB family 11 158 6.2E-33 T 10-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 Gene3D G3DSA:2.30.40.20 16 79 1.1E-38 T 10-10-2018 AMQ28_07440 55dd21d69bb3b637ea21f67944e1adb2 431 Pfam PF11799 impB/mucB/samB family C-terminal domain 250 364 7.5E-11 T 10-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 Pfam PF00334 Nucleoside diphosphate kinase 4 138 9.4E-55 T 10-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 Gene3D G3DSA:3.30.70.141 1 143 2.8E-58 T 10-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 2.3E-38 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 2.3E-38 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 2.3E-38 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 2.3E-38 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 2.3E-38 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 SUPERFAMILY SSF54919 1 140 6.15E-55 T 10-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 SMART SM00562 3 140 3.5E-82 T 10-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.662 T 10-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMQ28_05780 1230c1cbbfb19d460e40ce03f281b43c 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 10-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 PIRSF PIRSF002134 1 118 3.2E-40 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 Pfam PF00416 Ribosomal protein S13/S18 3 62 2.1E-13 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 Pfam PF00416 Ribosomal protein S13/S18 65 108 7.8E-17 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 Gene3D G3DSA:4.10.910.10 72 118 3.8E-27 T 10-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 SUPERFAMILY SSF46946 2 114 2.62E-45 T 10-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 10-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.047 T 10-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 5.0E-53 T 10-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10295 505c15e2d1ff81544acd6030880fcd63 118 Gene3D G3DSA:1.10.8.50 1 71 5.3E-26 T 10-10-2018 AMQ28_02290 9f7752eb6cfd0b7e76c7bea155e3bced 193 Gene3D G3DSA:3.40.50.360 1 193 3.2E-60 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_02290 9f7752eb6cfd0b7e76c7bea155e3bced 193 Pfam PF02525 Flavodoxin-like fold 3 188 1.6E-32 T 10-10-2018 IPR003680 Flavodoxin-like fold AMQ28_02290 9f7752eb6cfd0b7e76c7bea155e3bced 193 SUPERFAMILY SSF52218 1 192 3.75E-36 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_10470 1e97cae8674984e4762e2fa29547f003 651 Gene3D G3DSA:1.10.530.10 479 643 7.2E-42 T 10-10-2018 AMQ28_10470 1e97cae8674984e4762e2fa29547f003 651 Gene3D G3DSA:1.25.20.10 29 388 2.6E-57 T 10-10-2018 AMQ28_10470 1e97cae8674984e4762e2fa29547f003 651 SUPERFAMILY SSF53955 483 642 1.27E-43 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_10470 1e97cae8674984e4762e2fa29547f003 651 SUPERFAMILY SSF48435 31 481 7.19E-88 T 10-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMQ28_10470 1e97cae8674984e4762e2fa29547f003 651 Pfam PF01464 Transglycosylase SLT domain 493 600 2.2E-22 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 SUPERFAMILY SSF82866 428 626 5.36E-46 T 10-10-2018 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 618 8.2E-135 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Pfam PF02355 Protein export membrane protein 455 620 3.0E-18 T 10-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Pfam PF07549 SecD/SecF GG Motif 115 139 2.6E-7 T 10-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Gene3D G3DSA:3.30.70.3400 221 455 4.7E-48 T 10-10-2018 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Gene3D G3DSA:1.20.1640.10 468 625 2.7E-14 T 10-10-2018 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 5.2E-8 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 PRINTS PR00702 Acriflavin resistance protein family signature 520 544 5.2E-8 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 PRINTS PR00702 Acriflavin resistance protein family signature 595 618 5.2E-8 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Gene3D G3DSA:3.30.1360.200 279 449 4.7E-48 T 10-10-2018 AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Pfam PF13721 SecD export protein N-terminal TM region 2 102 2.1E-34 T 10-10-2018 IPR027398 SecD export protein N-terminal TM domain AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 356 611 3.8E-72 T 10-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMQ28_10855 8e6ab92b49af22ec5cde5d39d68fbeba 633 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 632 49.698 T 10-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMQ28_12645 ae5fe607dbf3a42bddfac9f057cda621 419 Pfam PF00990 Diguanylate cyclase, GGDEF domain 248 407 3.2E-50 T 10-10-2018 IPR000160 GGDEF domain AMQ28_12645 ae5fe607dbf3a42bddfac9f057cda621 419 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 245 411 4.3E-53 T 10-10-2018 IPR000160 GGDEF domain AMQ28_12645 ae5fe607dbf3a42bddfac9f057cda621 419 SMART SM00267 236 411 1.1E-56 T 10-10-2018 IPR000160 GGDEF domain AMQ28_12645 ae5fe607dbf3a42bddfac9f057cda621 419 SUPERFAMILY SSF55073 252 410 1.41E-46 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_12645 ae5fe607dbf3a42bddfac9f057cda621 419 Gene3D G3DSA:3.30.70.270 237 412 2.1E-54 T 10-10-2018 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 472 2.9E-47 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Pfam PF12705 PD-(D/E)XK nuclease superfamily 988 1196 5.3E-7 T 10-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Gene3D G3DSA:3.40.50.300 17 472 3.8E-74 T 10-10-2018 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Gene3D G3DSA:1.10.3170.10 165 382 3.8E-74 T 10-10-2018 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Pfam PF13361 UvrD-like helicase C-terminal domain 481 860 7.2E-28 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 SUPERFAMILY SSF52980 926 1225 3.32E-57 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Gene3D G3DSA:3.90.320.10 922 1230 4.7E-68 T 10-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 SUPERFAMILY SSF52540 21 863 1.95E-85 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 5 1225 15.575 T 10-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Gene3D G3DSA:3.40.50.300 486 868 1.3E-68 T 10-10-2018 AMQ28_06485 3a3517ae6c12e665e1fc0930ee54d0c8 1232 Gene3D G3DSA:1.10.486.10 613 758 1.3E-68 T 10-10-2018 AMQ28_13775 fe6dd6c253b2c0e937c9f23a5bf39cb3 291 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 40 2.9E-9 T 10-10-2018 IPR011723 Zinc finger/thioredoxin putative AMQ28_13775 fe6dd6c253b2c0e937c9f23a5bf39cb3 291 Pfam PF11906 Protein of unknown function (DUF3426) 150 288 2.8E-13 T 10-10-2018 IPR021834 Protein of unknown function DUF3426 AMQ28_00955 665fb64a90f8c1a0b557c56b7e3fa1b4 342 Pfam PF03601 Conserved hypothetical protein 698 25 321 9.2E-72 T 10-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 Pfam PF00731 AIR carboxylase 12 159 4.4E-63 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 SMART SM01001 10 161 2.5E-102 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 SUPERFAMILY SSF52255 11 166 1.44E-65 T 10-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 165 2.9E-64 T 10-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 PIRSF PIRSF001338 7 167 8.4E-66 T 10-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 31.984 T 10-10-2018 IPR033747 Class I PurE AMQ28_08175 18a347752a770802b8a8407b5b51dbac 170 Gene3D G3DSA:3.40.50.7700 1 169 6.3E-73 T 10-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Pfam PF01043 SecA preprotein cross-linking domain 232 355 1.0E-36 T 10-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 830 19.623 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Gene3D G3DSA:3.90.1440.10 229 365 7.8E-169 T 10-10-2018 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 ProSitePatterns PS01312 SecA family signature. 498 513 - T 10-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 410 423 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 170 190 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 336 358 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 63 87 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 373 390 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 117 127 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 PRINTS PR00906 SecA protein signature 101 115 2.1E-68 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Pfam PF02810 SEC-C motif 890 908 6.5E-10 T 10-10-2018 IPR004027 SEC-C motif AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Gene3D G3DSA:1.10.3060.10 619 830 1.1E-72 T 10-10-2018 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SMART SM00957 6 399 4.0E-285 T 10-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SMART SM00958 228 355 4.8E-71 T 10-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 815 0.0 T 10-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Gene3D G3DSA:3.40.50.300 22 412 7.8E-169 T 10-10-2018 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Gene3D G3DSA:3.10.450.50 831 909 8.3E-7 T 10-10-2018 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Pfam PF07516 SecA Wing and Scaffold domain 615 827 4.0E-66 T 10-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Pfam PF07517 SecA DEAD-like domain 8 399 2.8E-127 T 10-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SUPERFAMILY SSF52540 413 616 1.56E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SUPERFAMILY SSF81767 227 365 2.35E-40 T 10-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SUPERFAMILY SSF81886 618 898 1.96E-78 T 10-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 Gene3D G3DSA:3.40.50.300 414 618 2.8E-84 T 10-10-2018 AMQ28_11130 e23d6575671f01fae23b1af40d3daed3 909 SUPERFAMILY SSF52540 6 412 6.84E-81 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14160 01e449c5900488c530d0c2e9844c5a9a 216 SUPERFAMILY SSF51735 3 133 7.66E-35 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_14160 01e449c5900488c530d0c2e9844c5a9a 216 Gene3D G3DSA:3.40.50.720 2 136 7.1E-37 T 10-10-2018 AMQ28_14160 01e449c5900488c530d0c2e9844c5a9a 216 SUPERFAMILY SSF116726 131 213 2.75E-8 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMQ28_14160 01e449c5900488c530d0c2e9844c5a9a 216 Gene3D G3DSA:3.30.70.1450 137 213 3.0E-7 T 10-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMQ28_14160 01e449c5900488c530d0c2e9844c5a9a 216 Pfam PF02254 TrkA-N domain 4 119 7.1E-28 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMQ28_03130 23cfcb61fc1d709b64a9ab45740d701c 149 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 147 1.9E-24 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMQ28_03130 23cfcb61fc1d709b64a9ab45740d701c 149 Gene3D G3DSA:3.30.420.270 63 138 5.5E-9 T 10-10-2018 AMQ28_03130 23cfcb61fc1d709b64a9ab45740d701c 149 TIGRFAM TIGR02801 tolR: protein TolR 17 146 5.4E-39 T 10-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMQ28_03130 23cfcb61fc1d709b64a9ab45740d701c 149 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 10 146 26.523 T 10-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMQ28_00200 06dababde47246d6e5b10ed8e82072a0 161 Gene3D G3DSA:3.40.630.30 1 149 5.4E-24 T 10-10-2018 AMQ28_00200 06dababde47246d6e5b10ed8e82072a0 161 SUPERFAMILY SSF55729 1 160 9.43E-26 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_00200 06dababde47246d6e5b10ed8e82072a0 161 Pfam PF00583 Acetyltransferase (GNAT) family 36 137 1.7E-14 T 10-10-2018 IPR000182 GNAT domain AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 Gene3D G3DSA:1.10.8.260 268 321 5.4E-59 T 10-10-2018 IPR023166 HI0933-like insert domain superfamily AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 Gene3D G3DSA:2.40.30.10 190 338 5.4E-59 T 10-10-2018 AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 Pfam PF03486 HI0933-like protein 4 390 6.4E-83 T 10-10-2018 AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 26 396 1.4E-159 T 10-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 SUPERFAMILY SSF160996 201 338 4.97E-15 T 10-10-2018 AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 389 3.1E-75 T 10-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 SUPERFAMILY SSF51905 1 393 5.56E-38 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_06345 4086ff60c8d653e92046518c092dea0a 405 Gene3D G3DSA:3.50.50.60 5 389 5.4E-59 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 SUPERFAMILY SSF47384 244 317 6.67E-12 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 SMART SM00304 206 259 4.2E-4 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 460 3.8E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 1.8E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 1.8E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 SMART SM00387 355 463 1.1E-26 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 Pfam PF00672 HAMP domain 206 251 7.4E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 Gene3D G3DSA:3.30.565.10 321 469 3.8E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 Gene3D G3DSA:1.10.287.130 203 314 9.6E-20 T 10-10-2018 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 SMART SM00388 260 319 1.3E-7 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 315 9.4E-8 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_09515 67e5c39d9fe9a457d8a5f2fe7b31312c 486 SUPERFAMILY SSF55874 316 465 8.25E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11475 e668b7c147dfcfd99882523de49a85fe 300 Gene3D G3DSA:1.20.1530.20 156 300 1.9E-8 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_11475 e668b7c147dfcfd99882523de49a85fe 300 Pfam PF03547 Membrane transport protein 155 295 9.7E-9 T 10-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 Pfam PF00691 OmpA family 81 175 2.4E-20 T 10-10-2018 IPR006665 OmpA-like domain AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 181 28.992 T 10-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 Gene3D G3DSA:3.30.1330.60 69 182 7.5E-40 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 79 181 6.0E-43 T 10-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 ProSitePatterns PS01068 OmpA-like domain. 113 157 - T 10-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 PRINTS PR01021 OMPA domain signature 111 126 3.5E-17 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 PRINTS PR01021 OMPA domain signature 126 142 3.5E-17 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 PRINTS PR01021 OMPA domain signature 81 103 3.5E-17 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_03145 78c3aa803092dc1ce53e9ff80b64e1c0 189 SUPERFAMILY SSF103088 69 179 6.54E-34 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 SUPERFAMILY SSF101386 135 224 5.79E-19 T 10-10-2018 AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 Gene3D G3DSA:1.10.287.1080 124 252 3.2E-35 T 10-10-2018 AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 Gene3D G3DSA:1.10.287.1080 1 120 1.2E-41 T 10-10-2018 AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 21 94 5.9E-25 T 10-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 163 218 1.6E-6 T 10-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 SUPERFAMILY SSF101386 1 95 2.33E-23 T 10-10-2018 AMQ28_05730 17cd0325c99f3c66266f04cb82a7bd56 254 TIGRFAM TIGR00444 mazG: MazG family protein 7 249 2.1E-76 T 10-10-2018 IPR011551 NTP pyrophosphohydrolase MazG AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SMART SM00448 664 787 3.2E-33 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Gene3D G3DSA:1.20.120.160 810 934 1.2E-22 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SUPERFAMILY SSF47226 770 893 6.93E-17 T 10-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 456 2.5E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 470 2.5E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 495 2.5E-9 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 401 518 1.8E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Pfam PF01627 Hpt domain 833 922 1.2E-9 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SMART SM00073 823 920 7.4E-6 T 10-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Pfam PF00512 His Kinase A (phospho-acceptor) domain 288 354 2.8E-21 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SUPERFAMILY SSF52172 662 795 6.12E-33 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Pfam PF00072 Response regulator receiver domain 666 787 1.5E-22 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SMART SM00388 288 354 1.4E-23 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Gene3D G3DSA:3.30.565.10 353 526 5.6E-48 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SMART SM00387 401 522 1.4E-34 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Gene3D G3DSA:3.40.50.2300 651 798 9.7E-38 T 10-10-2018 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SUPERFAMILY SSF47384 274 355 1.63E-22 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 Gene3D G3DSA:1.10.287.130 251 352 4.2E-27 T 10-10-2018 AMQ28_10825 8d9f397561169cf2f1b98567eed61251 936 SUPERFAMILY SSF55874 343 517 6.68E-41 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_02030 59b3c346558fa359111adb3b6b9dd6d5 230 Gene3D G3DSA:1.10.357.10 78 229 6.7E-28 T 10-10-2018 AMQ28_02030 59b3c346558fa359111adb3b6b9dd6d5 230 Gene3D G3DSA:1.10.10.60 27 77 1.0E-16 T 10-10-2018 AMQ28_02030 59b3c346558fa359111adb3b6b9dd6d5 230 SUPERFAMILY SSF46689 27 100 2.92E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_02030 59b3c346558fa359111adb3b6b9dd6d5 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 87 6.5E-9 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_01460 e479c3adb4ee54a1e711a380fa6cde8b 347 Gene3D G3DSA:3.40.50.1820 70 344 2.4E-37 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01460 e479c3adb4ee54a1e711a380fa6cde8b 347 SUPERFAMILY SSF53474 72 332 4.83E-31 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01460 e479c3adb4ee54a1e711a380fa6cde8b 347 Pfam PF12146 Serine aminopeptidase, S33 88 323 3.7E-33 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 Pfam PF05175 Methyltransferase small domain 164 333 9.1E-54 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 SUPERFAMILY SSF53335 150 330 6.03E-25 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 Gene3D G3DSA:3.40.50.150 1 150 5.3E-39 T 10-10-2018 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 Pfam PF08468 Methyltransferase small domain N-terminal 5 156 1.8E-42 T 10-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 Gene3D G3DSA:3.40.50.150 151 340 2.3E-41 T 10-10-2018 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 266 272 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_04775 2407fb9002bb45888971bd258611a51a 341 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 337 38.514 T 10-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 PIRSF PIRSF000103 1 291 3.5E-67 T 10-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 Gene3D G3DSA:1.10.1040.10 162 290 2.5E-35 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 SUPERFAMILY SSF48179 163 289 5.55E-33 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 3.3E-43 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 282 4.8E-29 T 10-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 SUPERFAMILY SSF51735 2 160 2.12E-41 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_04600 c840bcf874e3a66550603d99fa56d9c7 292 Gene3D G3DSA:3.40.50.720 1 161 2.2E-43 T 10-10-2018 AMQ28_03020 66256f8ec7dab159cf3104cc979adc2e 248 SUPERFAMILY SSF56925 43 203 5.23E-7 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMQ28_03020 66256f8ec7dab159cf3104cc979adc2e 248 Gene3D G3DSA:2.40.160.170 23 248 1.3E-77 T 10-10-2018 AMQ28_06635 bb6708f81d845cca7f95e56d6e6b277e 196 SUPERFAMILY SSF52540 1 195 1.62E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06635 bb6708f81d845cca7f95e56d6e6b277e 196 Gene3D G3DSA:3.40.50.300 1 196 4.8E-64 T 10-10-2018 AMQ28_06635 bb6708f81d845cca7f95e56d6e6b277e 196 Pfam PF01121 Dephospho-CoA kinase 4 180 2.1E-63 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMQ28_06635 bb6708f81d845cca7f95e56d6e6b277e 196 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 186 1.0E-52 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMQ28_06635 bb6708f81d845cca7f95e56d6e6b277e 196 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 26.329 T 10-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMQ28_03820 13c2f01eb3c5e7fce5d611799f187af8 180 Pfam PF00156 Phosphoribosyl transferase domain 57 152 1.5E-14 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMQ28_03820 13c2f01eb3c5e7fce5d611799f187af8 180 SUPERFAMILY SSF53271 6 156 2.35E-29 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_03820 13c2f01eb3c5e7fce5d611799f187af8 180 Gene3D G3DSA:3.40.50.2020 6 173 1.5E-39 T 10-10-2018 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Gene3D G3DSA:3.40.50.10070 26 161 4.3E-33 T 10-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Pfam PF04052 TolB amino-terminal domain 31 125 2.2E-20 T 10-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 SUPERFAMILY SSF52964 41 158 3.66E-29 T 10-10-2018 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Pfam PF07676 WD40-like Beta Propeller Repeat 236 270 4.0E-8 T 10-10-2018 IPR011659 WD40-like Beta Propeller AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Pfam PF07676 WD40-like Beta Propeller Repeat 371 395 0.003 T 10-10-2018 IPR011659 WD40-like Beta Propeller AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Pfam PF07676 WD40-like Beta Propeller Repeat 278 314 1.9E-10 T 10-10-2018 IPR011659 WD40-like Beta Propeller AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Pfam PF07676 WD40-like Beta Propeller Repeat 201 226 0.0024 T 10-10-2018 IPR011659 WD40-like Beta Propeller AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Gene3D G3DSA:2.120.10.30 162 428 4.1E-80 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 22 425 1.1E-150 T 10-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 SUPERFAMILY SSF69304 151 427 1.83E-51 T 10-10-2018 AMQ28_03140 a836162a2ab19de8006ffa13c17af873 428 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 13 425 41.525 T 10-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 SUPERFAMILY SSF51735 2 190 1.48E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_02400 c17400e07790867d8adc523e9667442d 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 167 322 2.5E-48 T 10-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 SMART SM00846 2 162 8.5E-68 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 112 6.1E-34 T 10-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 183 199 8.4E-27 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 8.4E-27 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 156 174 8.4E-27 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 8.4E-27 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 8.4E-27 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 160 167 - T 10-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 SUPERFAMILY SSF55347 162 323 5.66E-54 T 10-10-2018 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 Gene3D G3DSA:3.40.50.720 3 336 6.8E-125 T 10-10-2018 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 Gene3D G3DSA:3.30.360.10 161 324 6.8E-125 T 10-10-2018 AMQ28_02400 c17400e07790867d8adc523e9667442d 340 PIRSF PIRSF000149 1 340 1.9E-113 T 10-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 SMART SM00852 185 327 1.1E-26 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 172 2.8E-31 T 10-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Gene3D G3DSA:2.170.190.11 53 146 1.4E-100 T 10-10-2018 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Pfam PF03454 MoeA C-terminal region (domain IV) 340 404 2.1E-12 T 10-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 SUPERFAMILY SSF53218 181 334 2.36E-30 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 182 320 1.1E-26 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 SUPERFAMILY SSF63867 336 408 8.5E-12 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 SUPERFAMILY SSF63882 9 180 4.84E-41 T 10-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Pfam PF00994 Probable molybdopterin binding domain 185 321 7.7E-24 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Gene3D G3DSA:2.40.340.10 336 403 1.4E-100 T 10-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Gene3D G3DSA:3.40.980.10 180 335 1.4E-100 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMQ28_03485 1a5df77a0dff1fd8f1d08465f8685f57 409 Gene3D G3DSA:3.90.105.10 31 179 1.4E-100 T 10-10-2018 AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Gene3D G3DSA:1.10.10.10 412 472 2.1E-9 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Gene3D G3DSA:3.30.565.60 212 378 5.5E-46 T 10-10-2018 IPR038475 RecG, C-terminal domain superfamily AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 SUPERFAMILY SSF46785 406 464 4.62E-11 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Pfam PF13412 Winged helix-turn-helix DNA-binding 412 458 2.0E-9 T 10-10-2018 AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 290 376 1.4E-23 T 10-10-2018 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Gene3D G3DSA:3.30.950.30 3 138 1.4E-27 T 10-10-2018 IPR038461 Schlafen, AAA domain superfamily AMQ28_10705 e520e2c2ab1ae014f285112287f30ecb 477 Pfam PF04326 Putative DNA-binding domain 15 129 1.7E-20 T 10-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 AMQ28_01305 405860fbcd1ec5402a4849c2f9016813 340 SMART SM00342 252 335 5.0E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_01305 405860fbcd1ec5402a4849c2f9016813 340 Gene3D G3DSA:1.10.10.60 233 340 1.6E-24 T 10-10-2018 AMQ28_01305 405860fbcd1ec5402a4849c2f9016813 340 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 206 2.3E-31 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_01305 405860fbcd1ec5402a4849c2f9016813 340 SUPERFAMILY SSF46689 288 337 1.48E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_01305 405860fbcd1ec5402a4849c2f9016813 340 Pfam PF12833 Helix-turn-helix domain 259 336 2.8E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 SMART SM00388 237 303 5.5E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 8 455 1.3E-105 T 10-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 301 3.5E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 SMART SM00387 348 457 5.3E-15 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 Gene3D G3DSA:1.10.287.130 187 304 3.8E-19 T 10-10-2018 AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 Gene3D G3DSA:3.30.565.10 307 457 2.7E-29 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 455 2.5E-13 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 SUPERFAMILY SSF55874 292 456 1.83E-29 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_00895 1b8cad98ce440ebf811281ac92c19f30 457 SUPERFAMILY SSF47384 221 302 1.14E-14 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_11875 a0a630f5eecce7474c8c2a1c98fc918c 297 Gene3D G3DSA:3.40.190.10 27 272 1.2E-94 T 10-10-2018 AMQ28_11875 a0a630f5eecce7474c8c2a1c98fc918c 297 SMART SM00062 37 269 1.4E-47 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMQ28_11875 a0a630f5eecce7474c8c2a1c98fc918c 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 267 7.3E-47 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMQ28_11875 a0a630f5eecce7474c8c2a1c98fc918c 297 SUPERFAMILY SSF53850 23 270 4.6E-58 T 10-10-2018 AMQ28_11875 a0a630f5eecce7474c8c2a1c98fc918c 297 Gene3D G3DSA:3.40.190.10 132 226 1.2E-94 T 10-10-2018 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 20 325 6.5E-114 T 10-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 SUPERFAMILY SSF55681 19 327 9.16E-63 T 10-10-2018 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 Pfam PF00152 tRNA synthetases class II (D, K and N) 18 327 1.6E-40 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 PRINTS PR00982 Lysyl-tRNA synthetase signature 35 45 1.1E-10 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 PRINTS PR00982 Lysyl-tRNA synthetase signature 101 118 1.1E-10 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 PRINTS PR00982 Lysyl-tRNA synthetase signature 83 96 1.1E-10 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 PRINTS PR00982 Lysyl-tRNA synthetase signature 212 228 1.1E-10 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03435 37acc1bd30e10f0b510f88fe25ddfbf9 330 Gene3D G3DSA:3.30.930.10 5 329 1.9E-88 T 10-10-2018 AMQ28_10930 15822b5ecae129e1472ead3f577234cf 297 Pfam PF04321 RmlD substrate binding domain 1 294 1.4E-102 T 10-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMQ28_10930 15822b5ecae129e1472ead3f577234cf 297 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 293 8.2E-98 T 10-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMQ28_10930 15822b5ecae129e1472ead3f577234cf 297 Gene3D G3DSA:3.40.50.720 3 281 1.6E-109 T 10-10-2018 AMQ28_10930 15822b5ecae129e1472ead3f577234cf 297 SUPERFAMILY SSF51735 1 294 1.06E-94 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10930 15822b5ecae129e1472ead3f577234cf 297 Gene3D G3DSA:3.90.25.10 163 288 1.6E-109 T 10-10-2018 AMQ28_00085 3cbd3f91d608561926fbb02619e3a89a 102 SUPERFAMILY SSF160191 1 86 8.63E-26 T 10-10-2018 IPR038068 YcgL-like superfamily AMQ28_00085 3cbd3f91d608561926fbb02619e3a89a 102 Hamap MF_01866 Protein YcgL [ycgL]. 1 96 22.732 T 10-10-2018 IPR027354 YcgL domain AMQ28_00085 3cbd3f91d608561926fbb02619e3a89a 102 Pfam PF05166 YcgL domain 3 85 8.5E-27 T 10-10-2018 IPR027354 YcgL domain AMQ28_00085 3cbd3f91d608561926fbb02619e3a89a 102 Gene3D G3DSA:3.10.510.20 1 84 1.3E-28 T 10-10-2018 IPR038068 YcgL-like superfamily AMQ28_00085 3cbd3f91d608561926fbb02619e3a89a 102 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 86 8.0E-30 T 10-10-2018 IPR027354 YcgL domain AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 100 1.2E-43 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 267 38.558 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 105 118 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 86 102 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 40 51 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 65 83 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 149 158 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 121 134 2.2E-39 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 7 266 7.6E-114 T 10-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 SUPERFAMILY SSF52096 8 265 6.4E-83 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_05255 4fef979a389f0b4724c6d881ce2a28a4 273 Gene3D G3DSA:3.90.226.10 1 267 1.2E-94 T 10-10-2018 AMQ28_04755 2660b2cbe52065bcd7dfcaa24d64eb86 93 Pfam PF00639 PPIC-type PPIASE domain 14 88 4.6E-19 T 10-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMQ28_04755 2660b2cbe52065bcd7dfcaa24d64eb86 93 SUPERFAMILY SSF54534 3 87 2.22E-27 T 10-10-2018 AMQ28_04755 2660b2cbe52065bcd7dfcaa24d64eb86 93 Gene3D G3DSA:3.10.50.40 1 91 5.7E-31 T 10-10-2018 AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 2 263 30.54 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 SUPERFAMILY SSF54211 1 156 7.59E-46 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 Gene3D G3DSA:3.30.70.890 159 275 2.3E-18 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 Gene3D G3DSA:3.30.230.10 1 156 2.5E-56 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 Pfam PF00288 GHMP kinases N terminal domain 85 141 8.0E-11 T 10-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 SUPERFAMILY SSF55060 158 271 1.15E-21 T 10-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 PIRSF PIRSF010376 1 269 1.2E-77 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMQ28_12105 07b5a3c4193c45b57683b191ccd3e7e5 277 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 257 6.4E-78 T 10-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Pfam PF08206 Ribonuclease B OB domain 90 140 4.9E-5 T 10-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 714 8.2E-229 T 10-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SUPERFAMILY SSF50249 139 240 1.57E-11 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Gene3D G3DSA:2.40.50.140 634 746 2.6E-21 T 10-10-2018 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SUPERFAMILY SSF50249 73 148 6.29E-8 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Pfam PF00575 S1 RNA binding domain 632 712 4.6E-11 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Hamap MF_01895 Ribonuclease R [rnr]. 41 714 49.972 T 10-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SMART SM00316 631 714 4.1E-11 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SMART SM00955 262 588 2.8E-169 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 77 714 1.3E-188 T 10-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Gene3D G3DSA:2.40.50.140 70 148 2.2E-6 T 10-10-2018 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 Pfam PF00773 RNB domain 262 587 1.1E-106 T 10-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SUPERFAMILY SSF50249 230 631 6.43E-138 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 SUPERFAMILY SSF50249 632 715 1.12E-19 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10370 c24f0aedb52f3ec45e08e69ced74fe13 805 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 10-10-2018 IPR022966 Ribonuclease II/R, conserved site AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 SUPERFAMILY SSF81442 44 560 1.27E-174 T 10-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 Gene3D G3DSA:1.20.210.10 18 565 2.5E-185 T 10-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 281 335 - T 10-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 4 648 0.0 T 10-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 48 73 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 98 121 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 384 402 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 279 300 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 199 217 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 125 149 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 228 247 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 412 431 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 340 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 462 483 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 167 179 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 349 370 7.5E-95 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01385 39d8867b399e09cacd051f7d31a017d2 662 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 57 505 7.6E-137 T 10-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_05065 021cfc6cc5eba971f1a15a710a51fabb 272 Gene3D G3DSA:3.40.50.150 71 271 6.2E-60 T 10-10-2018 AMQ28_05065 021cfc6cc5eba971f1a15a710a51fabb 272 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 4 268 27.387 T 10-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AMQ28_05065 021cfc6cc5eba971f1a15a710a51fabb 272 SUPERFAMILY SSF53335 37 271 1.73E-50 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_05065 021cfc6cc5eba971f1a15a710a51fabb 272 Pfam PF04445 Putative SAM-dependent methyltransferase 78 266 1.4E-49 T 10-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 Pfam PF00425 chorismate binding enzyme 176 430 3.0E-92 T 10-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 Gene3D G3DSA:3.60.120.10 12 440 2.7E-123 T 10-10-2018 IPR005801 ADC synthase GO:0009058 AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 SUPERFAMILY SSF56322 53 439 5.76E-111 T 10-10-2018 IPR005801 ADC synthase GO:0009058 AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 PRINTS PR00095 Anthranilate synthase component I signature 292 305 2.3E-10 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 PRINTS PR00095 Anthranilate synthase component I signature 278 291 2.3E-10 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_05125 13c6413c8a9d431928b55e43d299b12c 445 PRINTS PR00095 Anthranilate synthase component I signature 372 386 2.3E-10 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.243 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 10-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 SUPERFAMILY SSF46561 1 63 1.02E-18 T 10-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 Pfam PF00831 Ribosomal L29 protein 4 60 5.9E-19 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 8.3E-18 T 10-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10225 14f82c3046c9bc666d86bee6a76552d9 65 Gene3D G3DSA:1.10.287.310 1 63 1.3E-21 T 10-10-2018 AMQ28_10150 9147e5ec2be420b49cab4645848b14fd 302 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 50 234 26.86 T 10-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMQ28_10150 9147e5ec2be420b49cab4645848b14fd 302 SUPERFAMILY SSF52540 53 236 3.58E-32 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10150 9147e5ec2be420b49cab4645848b14fd 302 Pfam PF01926 50S ribosome-binding GTPase 64 175 1.1E-17 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_10150 9147e5ec2be420b49cab4645848b14fd 302 Gene3D G3DSA:3.40.50.300 39 236 1.8E-48 T 10-10-2018 AMQ28_10150 9147e5ec2be420b49cab4645848b14fd 302 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 45 230 9.4E-73 T 10-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 Gene3D G3DSA:3.40.220.10 1 145 2.5E-7 T 10-10-2018 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 SUPERFAMILY SSF53187 163 477 3.45E-123 T 10-10-2018 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 169 470 9.7E-124 T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 PRINTS PR00481 Cytosol aminopeptidase signature 327 347 1.3E-54 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 PRINTS PR00481 Cytosol aminopeptidase signature 355 370 1.3E-54 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 PRINTS PR00481 Cytosol aminopeptidase signature 246 263 1.3E-54 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 PRINTS PR00481 Cytosol aminopeptidase signature 268 289 1.3E-54 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 PRINTS PR00481 Cytosol aminopeptidase signature 305 326 1.3E-54 T 10-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 32 135 9.8E-7 T 10-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 SUPERFAMILY SSF52949 1 150 4.94E-8 T 10-10-2018 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 331 338 - T 10-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 Gene3D G3DSA:3.40.630.10 164 479 1.4E-137 T 10-10-2018 AMQ28_06825 308d8dc225f8727ac86952679d0af34b 482 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 479 34.909 T 10-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMQ28_07395 362b05a0787fa6710e67821288ef85ff 284 Pfam PF13276 HTH-like domain 44 94 9.4E-8 T 10-10-2018 IPR025948 HTH-like domain AMQ28_07395 362b05a0787fa6710e67821288ef85ff 284 Gene3D G3DSA:3.30.420.10 116 277 4.0E-11 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_07395 362b05a0787fa6710e67821288ef85ff 284 SUPERFAMILY SSF53098 113 273 1.06E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_07395 362b05a0787fa6710e67821288ef85ff 284 Pfam PF00665 Integrase core domain 119 233 3.5E-28 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00350 362b05a0787fa6710e67821288ef85ff 284 Pfam PF13276 HTH-like domain 44 94 9.4E-8 T 10-10-2018 IPR025948 HTH-like domain AMQ28_00350 362b05a0787fa6710e67821288ef85ff 284 Gene3D G3DSA:3.30.420.10 116 277 4.0E-11 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00350 362b05a0787fa6710e67821288ef85ff 284 SUPERFAMILY SSF53098 113 273 1.06E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00350 362b05a0787fa6710e67821288ef85ff 284 Pfam PF00665 Integrase core domain 119 233 3.5E-28 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09630 362b05a0787fa6710e67821288ef85ff 284 Pfam PF13276 HTH-like domain 44 94 9.4E-8 T 10-10-2018 IPR025948 HTH-like domain AMQ28_09630 362b05a0787fa6710e67821288ef85ff 284 Gene3D G3DSA:3.30.420.10 116 277 4.0E-11 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09630 362b05a0787fa6710e67821288ef85ff 284 SUPERFAMILY SSF53098 113 273 1.06E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09630 362b05a0787fa6710e67821288ef85ff 284 Pfam PF00665 Integrase core domain 119 233 3.5E-28 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_02455 bbb0be270f441b3ae9a3d3344b46618e 210 Gene3D G3DSA:1.10.3210.10 23 182 2.2E-6 T 10-10-2018 AMQ28_02455 bbb0be270f441b3ae9a3d3344b46618e 210 SUPERFAMILY SSF109604 32 203 1.21E-20 T 10-10-2018 AMQ28_02455 bbb0be270f441b3ae9a3d3344b46618e 210 PIRSF PIRSF035170 1 209 4.5E-46 T 10-10-2018 IPR009218 Predicted HD phosphohydrolase AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 405 8.2E-208 T 10-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 Gene3D G3DSA:3.40.640.10 16 263 4.2E-156 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 10-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 SUPERFAMILY SSF53383 3 391 9.11E-103 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 Pfam PF00266 Aminotransferase class-V 5 369 4.7E-80 T 10-10-2018 IPR000192 Aminotransferase class V domain AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 Gene3D G3DSA:3.90.1150.10 5 374 4.2E-156 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 PIRSF PIRSF005572 2 385 1.2E-124 T 10-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMQ28_14080 0d986ca24b4d88febc2cdfeaf599778f 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 396 53.197 T 10-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 219 1.5E-93 T 10-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 Gene3D G3DSA:1.10.10.10 125 223 2.2E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 SMART SM00862 144 219 5.0E-27 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 SMART SM00448 1 111 1.7E-41 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 SUPERFAMILY SSF52172 1 178 6.04E-41 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 Gene3D G3DSA:3.40.50.2300 1 124 5.5E-36 T 10-10-2018 AMQ28_00900 d5a0968e369a1698d8e1bd5a3513f0f7 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 5.1E-28 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_09855 6e66e8368c27bbcdc4399c36a6a20912 351 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 4.5E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09855 6e66e8368c27bbcdc4399c36a6a20912 351 Pfam PF16074 Type IV Pilus-assembly protein W 196 346 6.0E-13 T 10-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 AMQ28_09855 6e66e8368c27bbcdc4399c36a6a20912 351 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 29 2.1E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09855 6e66e8368c27bbcdc4399c36a6a20912 351 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09500 d99e40425c0cf669a122b9d0ad118dc8 233 Gene3D G3DSA:3.40.30.10 1 207 2.5E-68 T 10-10-2018 AMQ28_09500 d99e40425c0cf669a122b9d0ad118dc8 233 SUPERFAMILY SSF52833 1 208 7.67E-39 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_09500 d99e40425c0cf669a122b9d0ad118dc8 233 Pfam PF01323 DSBA-like thioredoxin domain 2 201 4.1E-41 T 10-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 SUPERFAMILY SSF51735 313 495 2.37E-55 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 202 7.3E-31 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Gene3D G3DSA:3.40.50.720 314 497 2.1E-65 T 10-10-2018 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 SUPERFAMILY SSF48179 619 708 1.19E-15 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 SUPERFAMILY SSF48179 496 634 1.7E-19 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 SUPERFAMILY SSF52096 1 300 1.01E-60 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Gene3D G3DSA:1.10.1040.50 498 701 1.3E-54 T 10-10-2018 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 597 1.8E-15 T 10-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Gene3D G3DSA:3.90.226.10 1 313 2.1E-96 T 10-10-2018 AMQ28_04735 0349442f4846f0b10031222fb491e765 711 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 3.1E-59 T 10-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 SUPERFAMILY SSF54211 134 277 1.37E-47 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 42.193 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 Gene3D G3DSA:3.30.1700.10 128 300 1.7E-61 T 10-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 3.6E-111 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 274 1.3E-96 T 10-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 SUPERFAMILY SSF54211 3 125 1.52E-37 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_08640 e0f43b30334d5fc5f20fa9822e51eeb0 300 Gene3D G3DSA:3.30.230.20 1 127 4.7E-43 T 10-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 Pfam PF07650 KH domain 271 327 5.4E-14 T 10-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 SUPERFAMILY SSF54814 214 340 1.37E-37 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 TIGRFAM TIGR00436 era: GTP-binding protein Era 40 322 5.4E-96 T 10-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 SUPERFAMILY SSF52540 41 251 3.76E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02930 e35b72850019288534571ff7375cabb1 342 Gene3D G3DSA:3.30.300.20 217 341 7.4E-41 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_02930 e35b72850019288534571ff7375cabb1 342 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 40 201 4.2E-34 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 Gene3D G3DSA:3.40.50.300 36 213 7.1E-52 T 10-10-2018 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 Hamap MF_00367 GTPase Era [era]. 37 339 36.494 T 10-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 Pfam PF01926 50S ribosome-binding GTPase 42 156 1.4E-25 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 110 128 2.8E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02930 e35b72850019288534571ff7375cabb1 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 42 62 2.8E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_06145 928ba2d4755931aff506e4b8e22bbada 300 SUPERFAMILY SSF53098 122 287 5.31E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_06145 928ba2d4755931aff506e4b8e22bbada 300 Pfam PF00665 Integrase core domain 128 242 1.2E-25 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_06145 928ba2d4755931aff506e4b8e22bbada 300 Pfam PF13276 HTH-like domain 52 103 2.2E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_06145 928ba2d4755931aff506e4b8e22bbada 300 Gene3D G3DSA:3.30.420.10 122 273 6.3E-14 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 SMART SM00862 151 227 1.2E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 227 3.8E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 Pfam PF00072 Response regulator receiver domain 6 119 1.1E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 4 228 1.1E-101 T 10-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 SMART SM00448 4 118 4.9E-42 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 Gene3D G3DSA:3.40.50.2300 2 131 1.3E-36 T 10-10-2018 AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 Gene3D G3DSA:1.10.10.10 132 231 1.3E-34 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 SUPERFAMILY SSF52172 5 130 2.42E-40 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_07210 2568ac43a4a577dd194d8e5b2eefe66e 236 SUPERFAMILY SSF46894 130 228 3.97E-29 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_10730 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_10730 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_04315 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_04315 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_11895 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_11895 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_00025 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_00025 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_09250 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_09250 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_07340 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_07340 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_13985 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_13985 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_01210 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Pfam PF13358 DDE superfamily endonuclease 8 102 7.7E-18 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_01210 a4e1c495af58b36b06f5fd4ac8e2c02c 127 Gene3D G3DSA:3.30.420.470 1 124 4.0E-10 T 10-10-2018 AMQ28_02835 42c1fea48d66ca9d1afb96bfcfb12f3d 287 Gene3D G3DSA:3.40.50.720 4 268 1.2E-87 T 10-10-2018 AMQ28_02835 42c1fea48d66ca9d1afb96bfcfb12f3d 287 SUPERFAMILY SSF51735 2 251 2.56E-54 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_02835 42c1fea48d66ca9d1afb96bfcfb12f3d 287 Pfam PF13460 NAD(P)H-binding 7 185 1.7E-20 T 10-10-2018 IPR016040 NAD(P)-binding domain AMQ28_02835 42c1fea48d66ca9d1afb96bfcfb12f3d 287 Gene3D G3DSA:3.90.25.10 138 269 1.2E-87 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 SUPERFAMILY SSF64484 11 1361 0.0 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF04565 RNA polymerase Rpb2, domain 3 522 589 3.5E-30 T 10-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:2.40.50.100 723 797 4.0E-31 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1110.10 320 450 2.0E-31 T 10-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:2.40.270.10 800 841 5.3E-6 T 10-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1110.10 160 249 1.0E-28 T 10-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 358 463 1.1E-13 T 10-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 153 224 5.3E-7 T 10-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1100.10 657 722 2.4E-20 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF04560 RNA polymerase Rpb2, domain 7 1285 1359 4.8E-26 T 10-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF00562 RNA polymerase Rpb2, domain 6 726 1283 2.1E-158 T 10-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1084 1096 - T 10-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1361 12.243 T 10-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1800.10 1271 1324 7.8E-11 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1100.10 18 159 2.3E-51 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:3.90.1100.10 451 634 5.8E-69 T 10-10-2018 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:2.40.270.10 1042 1261 1.3E-86 T 10-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF10385 RNA polymerase beta subunit external 1 domain 600 665 4.2E-21 T 10-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1358 0.0 T 10-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Pfam PF04563 RNA polymerase beta subunit 26 508 1.4E-40 T 10-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09425 affc8aed0dc53d8fbe81cd65188b15e6 1362 Gene3D G3DSA:2.40.50.150 842 964 3.0E-44 T 10-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 1.3E-74 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 Pfam PF00925 GTP cyclohydrolase II 211 365 2.7E-29 T 10-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 Gene3D G3DSA:3.90.870.10 1 206 1.3E-85 T 10-10-2018 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 SUPERFAMILY SSF142695 205 366 1.57E-34 T 10-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 2.9E-82 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 PIRSF PIRSF001259 2 373 2.5E-114 T 10-10-2018 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.39 T 10-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07640 f60493f7b7f6cd0511dd5d649e099a36 373 SUPERFAMILY SSF55821 2 202 9.16E-85 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 440 549 4.6E-17 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 Gene3D G3DSA:3.30.565.10 405 552 9.8E-32 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 Gene3D G3DSA:1.20.1480.50 247 335 3.0E-10 T 10-10-2018 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SUPERFAMILY SSF55874 385 549 5.5E-33 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 490 7.2E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 504 7.2E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 529 7.2E-6 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SUPERFAMILY SSF158472 280 322 3.79E-7 T 10-10-2018 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SUPERFAMILY SSF47384 316 396 7.46E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SMART SM00388 331 395 1.1E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 Pfam PF00512 His Kinase A (phospho-acceptor) domain 331 394 1.3E-11 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 Gene3D G3DSA:1.10.287.130 336 396 3.2E-10 T 10-10-2018 AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SMART SM00387 439 551 6.4E-30 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_11025 9a391494e159d95fa82662e13703f1a8 553 SMART SM00304 278 330 5.8E-4 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 Gene3D G3DSA:3.30.930.10 105 423 2.2E-117 T 10-10-2018 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 40.988 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.3E-30 T 10-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 SUPERFAMILY SSF46589 1 112 8.89E-31 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 399 9.5E-40 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PIRSF PIRSF001529 1 423 1.3E-182 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 SUPERFAMILY SSF55681 116 419 6.17E-103 T 10-10-2018 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 5.5E-171 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 Gene3D G3DSA:1.10.287.40 1 104 7.0E-24 T 10-10-2018 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 2.9E-31 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 2.9E-31 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 2.9E-31 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 2.9E-31 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_11995 a063059047b14aa7d5ae9a129bf94723 423 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 2.9E-31 T 10-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMQ28_02360 174935a980180e03647f510ad2b5d7cb 140 Gene3D G3DSA:3.30.300.20 39 139 7.6E-29 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_02360 174935a980180e03647f510ad2b5d7cb 140 Pfam PF02566 OsmC-like protein 33 132 2.0E-19 T 10-10-2018 IPR003718 OsmC/Ohr family AMQ28_02360 174935a980180e03647f510ad2b5d7cb 140 Gene3D G3DSA:2.20.25.10 1 32 1.1E-8 T 10-10-2018 AMQ28_02360 174935a980180e03647f510ad2b5d7cb 140 SUPERFAMILY SSF82784 1 138 4.71E-40 T 10-10-2018 IPR036102 OsmC/Ohr superfamily AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 Gene3D G3DSA:3.40.50.620 17 194 4.6E-119 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 20 28 - T 10-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 Gene3D G3DSA:1.10.287.400 380 443 1.8E-30 T 10-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 Gene3D G3DSA:3.90.1260.10 77 370 4.6E-119 T 10-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 SUPERFAMILY SSF52402 8 191 1.01E-34 T 10-10-2018 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 SUPERFAMILY SSF69864 193 445 5.36E-81 T 10-10-2018 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 Pfam PF00764 Arginosuccinate synthase 19 413 4.8E-61 T 10-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 16 422 1.6E-164 T 10-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 132 143 - T 10-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_12650 ee37e22c2bff6f8c94cdbdc747cdd24f 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 4 446 68.356 T 10-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 SUPERFAMILY SSF53686 19 325 1.96E-93 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 315 1.8E-64 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 Gene3D G3DSA:3.40.50.1100 25 321 7.8E-121 T 10-10-2018 AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 TIGRFAM TIGR01136 cysKM: cysteine synthase 22 326 1.4E-125 T 10-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 TIGRFAM TIGR01139 cysK: cysteine synthase A 22 326 8.0E-131 T 10-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 46 64 - T 10-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMQ28_00560 29720ae1df7930fe0de07bc458c52150 332 Gene3D G3DSA:3.40.50.1100 58 160 7.8E-121 T 10-10-2018 AMQ28_03215 344d58c4cc535a846edbb5c24b41fdf9 341 Gene3D G3DSA:3.90.226.10 87 289 4.1E-65 T 10-10-2018 AMQ28_03215 344d58c4cc535a846edbb5c24b41fdf9 341 Pfam PF01343 Peptidase family S49 149 300 1.5E-36 T 10-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMQ28_03215 344d58c4cc535a846edbb5c24b41fdf9 341 Gene3D G3DSA:3.40.1750.20 189 255 4.1E-65 T 10-10-2018 AMQ28_03215 344d58c4cc535a846edbb5c24b41fdf9 341 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 85 292 2.2E-47 T 10-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMQ28_03215 344d58c4cc535a846edbb5c24b41fdf9 341 SUPERFAMILY SSF52096 81 286 8.42E-41 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 Gene3D G3DSA:1.10.10.10 148 228 1.2E-14 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 Pfam PF13545 Crp-like helix-turn-helix domain 153 226 5.9E-13 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 SMART SM00100 15 136 2.5E-4 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 SUPERFAMILY SSF51206 9 139 6.55E-31 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 Pfam PF00027 Cyclic nucleotide-binding domain 34 118 1.0E-17 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 SUPERFAMILY SSF46785 150 229 3.81E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 SMART SM00419 172 219 1.3E-5 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_13375 41e0cad32986931fbfb6cc796bbfd3fe 234 Gene3D G3DSA:2.60.120.10 8 146 2.0E-24 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_00415 6eca9b43e6a5425f6919a8640632e040 375 SUPERFAMILY SSF56112 20 338 2.68E-55 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_00415 6eca9b43e6a5425f6919a8640632e040 375 Gene3D G3DSA:3.30.200.20 15 116 6.2E-28 T 10-10-2018 AMQ28_00415 6eca9b43e6a5425f6919a8640632e040 375 Gene3D G3DSA:3.90.1200.10 123 354 3.5E-61 T 10-10-2018 AMQ28_00415 6eca9b43e6a5425f6919a8640632e040 375 Pfam PF01636 Phosphotransferase enzyme family 38 267 1.0E-38 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase AMQ28_02955 1b76e760e61ed56c680d9662cefe1086 147 Pfam PF03061 Thioesterase superfamily 20 85 1.4E-9 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_02955 1b76e760e61ed56c680d9662cefe1086 147 Gene3D G3DSA:3.10.129.10 31 146 1.5E-24 T 10-10-2018 AMQ28_02955 1b76e760e61ed56c680d9662cefe1086 147 Gene3D G3DSA:3.10.129.10 2 30 8.4E-7 T 10-10-2018 AMQ28_02955 1b76e760e61ed56c680d9662cefe1086 147 SUPERFAMILY SSF54637 1 135 7.88E-41 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 SUPERFAMILY SSF63418 14 94 3.66E-9 T 10-10-2018 IPR035911 MurE/MurF, N-terminal AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 415 3.4E-19 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Pfam PF08245 Mur ligase middle domain 108 311 2.6E-51 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Gene3D G3DSA:3.90.190.20 342 496 2.9E-56 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 484 30.584 T 10-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Gene3D G3DSA:3.40.1190.10 99 336 3.0E-71 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 Gene3D G3DSA:3.40.1390.10 6 95 1.7E-9 T 10-10-2018 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 23 484 1.3E-141 T 10-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 SUPERFAMILY SSF53244 333 484 1.3E-48 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_09695 982e5c77202618275eeacc6325be7f8b 497 SUPERFAMILY SSF53623 99 331 1.14E-68 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_01000 345442fee0967ae5fecf2bd5fa4fde05 86 SMART SM00530 10 65 1.3E-8 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_01000 345442fee0967ae5fecf2bd5fa4fde05 86 Pfam PF01381 Helix-turn-helix 12 62 2.8E-9 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_01000 345442fee0967ae5fecf2bd5fa4fde05 86 SUPERFAMILY SSF47413 4 63 3.43E-13 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_01000 345442fee0967ae5fecf2bd5fa4fde05 86 Gene3D G3DSA:1.10.260.40 1 76 1.4E-13 T 10-10-2018 AMQ28_09165 0c608e7f2fd7cb24c5bb06cbc613a5c3 206 Gene3D G3DSA:2.40.50.140 1 86 2.7E-12 T 10-10-2018 AMQ28_09165 0c608e7f2fd7cb24c5bb06cbc613a5c3 206 SUPERFAMILY SSF50249 8 70 1.44E-10 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_09165 0c608e7f2fd7cb24c5bb06cbc613a5c3 206 Pfam PF00313 'Cold-shock' DNA-binding domain 8 67 1.3E-8 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_09165 0c608e7f2fd7cb24c5bb06cbc613a5c3 206 Pfam PF06961 Protein of unknown function (DUF1294) 125 179 2.5E-19 T 10-10-2018 IPR010718 Protein of unknown function DUF1294 AMQ28_01660 c9b1ca2d5cd268d39ae03a1ff597181b 173 SUPERFAMILY SSF53927 6 159 2.17E-49 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMQ28_01660 c9b1ca2d5cd268d39ae03a1ff597181b 173 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 58 96 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMQ28_01660 c9b1ca2d5cd268d39ae03a1ff597181b 173 Pfam PF14437 MafB19-like deaminase 8 155 1.5E-31 T 10-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMQ28_01660 c9b1ca2d5cd268d39ae03a1ff597181b 173 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 13 155 39.724 T 10-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMQ28_01660 c9b1ca2d5cd268d39ae03a1ff597181b 173 Gene3D G3DSA:3.40.140.10 2 172 1.3E-54 T 10-10-2018 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 575 23.296 T 10-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 Gene3D G3DSA:2.70.98.90 82 374 1.2E-96 T 10-10-2018 IPR038221 YidC, periplasmic domain superfamily AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 394 573 4.8E-70 T 10-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 Pfam PF02096 60Kd inner membrane protein 395 573 2.8E-60 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR01900 YidC translocation/secretion protein signature 380 396 7.6E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR01900 YidC translocation/secretion protein signature 528 552 7.6E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR01900 YidC translocation/secretion protein signature 509 524 7.6E-25 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 393 2.5E-105 T 10-10-2018 IPR028053 Membrane insertase YidC, N-terminal AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 Pfam PF14849 YidC periplasmic domain 86 382 2.1E-69 T 10-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 3 24 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 503 525 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 192 212 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 250 268 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 456 479 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 283 298 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 365 385 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_08115 b293b7673cd6e859f48786676410cfd6 585 PRINTS PR00701 60kDa inner membrane protein signature 539 562 3.2E-70 T 10-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 58 696 5.7E-108 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 SUPERFAMILY SSF56935 49 696 1.07E-125 T 10-10-2018 AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 Pfam PF00593 TonB dependent receptor 231 695 3.6E-58 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 159 1.8E-16 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 Gene3D G3DSA:2.170.130.10 39 171 5.4E-27 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_12795 2ee330688aaa8d7d8d96f43028ca74c8 696 Gene3D G3DSA:2.40.170.20 172 696 8.0E-113 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Gene3D G3DSA:3.30.1840.10 13 324 6.2E-103 T 10-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 SUPERFAMILY SSF143724 123 324 5.1E-65 T 10-10-2018 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Pfam PF13089 Polyphosphate kinase N-terminal domain 20 125 1.9E-33 T 10-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 SUPERFAMILY SSF140356 17 121 4.05E-35 T 10-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Gene3D G3DSA:3.30.870.10 327 510 2.0E-71 T 10-10-2018 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Pfam PF13090 Polyphosphate kinase C-terminal domain 341 688 1.4E-154 T 10-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 SUPERFAMILY SSF56024 327 503 1.49E-56 T 10-10-2018 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Gene3D G3DSA:3.30.870.10 511 693 3.4E-68 T 10-10-2018 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Hamap MF_00347 Polyphosphate kinase [ppk]. 17 688 27.842 T 10-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 PIRSF PIRSF015589 2 693 6.9E-278 T 10-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 19 689 2.2E-287 T 10-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 SUPERFAMILY SSF56024 511 690 3.81E-72 T 10-10-2018 AMQ28_03845 6c893a406485f0134eb6ce84dc987294 693 Pfam PF02503 Polyphosphate kinase middle domain 135 332 1.9E-61 T 10-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMQ28_03900 d9e974eb6d4c07c7655a3000fb5f3d0b 205 Gene3D G3DSA:1.20.1540.10 4 195 4.0E-26 T 10-10-2018 IPR035952 Rhomboid-like superfamily AMQ28_03900 d9e974eb6d4c07c7655a3000fb5f3d0b 205 Pfam PF01694 Rhomboid family 41 190 2.7E-24 T 10-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMQ28_03900 d9e974eb6d4c07c7655a3000fb5f3d0b 205 SUPERFAMILY SSF144091 8 192 1.57E-34 T 10-10-2018 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 SMART SM00357 6 69 3.3E-28 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 SUPERFAMILY SSF50249 4 68 6.32E-24 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01225 930f6e00e1055e73d63451027316abde 69 PRINTS PR00050 Cold shock protein signature 27 36 4.0E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 PRINTS PR00050 Cold shock protein signature 42 60 4.0E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 PRINTS PR00050 Cold shock protein signature 7 22 4.0E-17 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 PIRSF PIRSF002599 1 69 7.8E-24 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 Gene3D G3DSA:2.40.50.140 4 67 4.3E-28 T 10-10-2018 AMQ28_01225 930f6e00e1055e73d63451027316abde 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 10-10-2018 IPR019844 Cold-shock conserved site AMQ28_01225 930f6e00e1055e73d63451027316abde 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 1.2E-28 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Gene3D G3DSA:1.10.10.10 257 333 1.6E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 328 8.0E-28 T 10-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 333 175.118 T 10-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 SUPERFAMILY SSF52540 20 252 1.44E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 2.2E-141 T 10-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 6.3E-29 T 10-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 SUPERFAMILY SSF46785 257 330 1.18E-21 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Gene3D G3DSA:1.10.8.60 182 255 6.8E-31 T 10-10-2018 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 235 4.4E-115 T 10-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 SMART SM00382 51 178 9.0E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03105 429d371dd2b4f260f37889e15eb77f85 333 Gene3D G3DSA:3.40.50.300 18 181 1.0E-37 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 SUPERFAMILY SSF51735 164 448 3.81E-86 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Pfam PF01515 Phosphate acetyl/butaryl transferase 426 748 1.9E-94 T 10-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Gene3D G3DSA:3.40.50.720 162 441 1.1E-82 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 SMART SM00919 164 397 9.1E-128 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Gene3D G3DSA:3.40.50.10750 569 724 1.1E-93 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Pfam PF00390 Malic enzyme, N-terminal domain 21 152 3.5E-26 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 SUPERFAMILY SSF53223 10 162 2.66E-52 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Pfam PF03949 Malic enzyme, NAD binding domain 166 357 3.2E-23 T 10-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 SUPERFAMILY SSF53659 426 751 3.37E-89 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 SMART SM01274 19 152 2.5E-79 T 10-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Gene3D G3DSA:3.40.50.10950 442 748 1.1E-93 T 10-10-2018 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 PIRSF PIRSF036684 1 756 0.0 T 10-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMQ28_03425 d6c0fce35e794cde686a48e135f1eca5 756 Gene3D G3DSA:3.40.50.10380 1 161 7.9E-69 T 10-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMQ28_03335 9d9b32f65304fb10b0bfcb7255c3baaa 211 SUPERFAMILY SSF53474 4 200 1.4E-33 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03335 9d9b32f65304fb10b0bfcb7255c3baaa 211 Gene3D G3DSA:3.40.50.1820 2 203 1.4E-31 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03335 9d9b32f65304fb10b0bfcb7255c3baaa 211 Pfam PF00561 alpha/beta hydrolase fold 8 130 3.7E-9 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03335 9d9b32f65304fb10b0bfcb7255c3baaa 211 Pfam PF08386 TAP-like protein 133 203 1.1E-5 T 10-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 238 35.516 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 SUPERFAMILY SSF64005 8 233 1.02E-79 T 10-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 183 200 - T 10-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 237 1.8E-82 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 Gene3D G3DSA:3.40.1180.10 2 238 1.8E-86 T 10-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMQ28_13830 2c4194b3ed0fcfc04601fbe343739af3 250 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 237 1.7E-72 T 10-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 PIRSF PIRSF004505 1 158 1.2E-51 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 158 6.7E-54 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 158 27.992 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 SUPERFAMILY SSF75217 1 156 4.34E-51 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 Gene3D G3DSA:3.40.1280.10 1 158 1.5E-53 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_12440 d35b7b86c9ca2d674bbabef61f95b68c 160 Pfam PF02590 Predicted SPOUT methyltransferase 1 157 8.0E-52 T 10-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMQ28_13905 54eb930b7efcd95630e7bcb228729325 245 Gene3D G3DSA:3.40.50.1240 26 209 1.7E-9 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_13905 54eb930b7efcd95630e7bcb228729325 245 SUPERFAMILY SSF53254 27 198 1.7E-13 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_13905 54eb930b7efcd95630e7bcb228729325 245 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 27 93 2.2E-6 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 162 5.3E-38 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 1.2E-22 T 10-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 SUPERFAMILY SSF51735 7 163 3.35E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 SUPERFAMILY SSF48179 163 287 2.15E-27 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 Gene3D G3DSA:1.10.1040.10 165 288 2.8E-30 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 Gene3D G3DSA:3.40.50.720 2 164 7.8E-40 T 10-10-2018 AMQ28_10815 2dfbd827836a68fcb59a02cc4c2abc7a 288 PIRSF PIRSF000103 2 288 4.2E-60 T 10-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_04610 ec9276409699493b2fd2388777be9381 330 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 207 9.3E-23 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMQ28_04610 ec9276409699493b2fd2388777be9381 330 Gene3D G3DSA:3.40.50.720 6 305 5.3E-114 T 10-10-2018 AMQ28_04610 ec9276409699493b2fd2388777be9381 330 Gene3D G3DSA:3.90.25.10 178 315 5.3E-114 T 10-10-2018 AMQ28_04610 ec9276409699493b2fd2388777be9381 330 SUPERFAMILY SSF51735 1 322 9.19E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 35 183 4.1E-58 T 10-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 SUPERFAMILY SSF88697 244 300 2.78E-5 T 10-10-2018 IPR015947 PUA-like superfamily AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 184 237 5.8E-7 T 10-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Gene3D G3DSA:3.30.2350.10 4 242 3.7E-84 T 10-10-2018 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 245 299 5.6E-9 T 10-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 14 220 8.4E-73 T 10-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 13 299 18.326 T 10-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 SUPERFAMILY SSF55120 12 236 1.18E-76 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_09915 e6851a024773d132e8095de8382b2865 301 Gene3D G3DSA:2.30.130.10 243 300 1.8E-5 T 10-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 30 683 48.728 T 10-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 SUPERFAMILY SSF102114 404 657 1.83E-10 T 10-10-2018 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 Pfam PF11842 Domain of unknown function (DUF3362) 631 781 2.1E-63 T 10-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 417 437 - T 10-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 30 681 3.4E-256 T 10-10-2018 IPR022946 Uncharacterised protein family UPF0313 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 Pfam PF04055 Radical SAM superfamily 417 620 1.1E-18 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 SMART SM00729 413 663 2.1E-7 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 Pfam PF08497 Radical SAM N-terminal 30 416 6.2E-140 T 10-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal AMQ28_06990 a1135cf1e5fc8c5e9a817b39d1c4247e 805 Gene3D G3DSA:3.80.30.20 413 676 2.9E-15 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMQ28_04720 d06dc83c79cddd047e9b8bd4166a388d 372 SUPERFAMILY SSF89796 4 368 5.1E-105 T 10-10-2018 IPR023606 CoA-transferase family III domain superfamily AMQ28_04720 d06dc83c79cddd047e9b8bd4166a388d 372 Gene3D G3DSA:3.30.1540.10 226 314 6.0E-105 T 10-10-2018 AMQ28_04720 d06dc83c79cddd047e9b8bd4166a388d 372 Gene3D G3DSA:3.40.50.10540 5 331 6.0E-105 T 10-10-2018 IPR023606 CoA-transferase family III domain superfamily AMQ28_04720 d06dc83c79cddd047e9b8bd4166a388d 372 Pfam PF02515 CoA-transferase family III 5 361 7.4E-90 T 10-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMQ28_00280 2acc75d3c73608aff565ffdc5a091088 406 SUPERFAMILY SSF53756 7 351 4.5E-25 T 10-10-2018 AMQ28_00280 2acc75d3c73608aff565ffdc5a091088 406 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 386 1.3E-97 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMQ28_00280 2acc75d3c73608aff565ffdc5a091088 406 Pfam PF02684 Lipid-A-disaccharide synthetase 8 371 3.6E-101 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMQ28_00280 2acc75d3c73608aff565ffdc5a091088 406 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 390 35.362 T 10-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMQ28_06820 96926316826dea5e0dacb4a3e39e4182 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 346 4.8E-91 T 10-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AMQ28_06820 96926316826dea5e0dacb4a3e39e4182 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 347 7.1E-72 T 10-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 265 39.642 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 PIRSF PIRSF000388 1 268 1.4E-92 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 Gene3D G3DSA:3.20.20.60 1 269 1.9E-97 T 10-10-2018 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 SUPERFAMILY SSF51621 2 265 3.34E-95 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 260 3.3E-99 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMQ28_05710 f99a4f1bbaac7997379d4e3dc4b0821c 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 6 266 5.2E-96 T 10-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMQ28_10410 34eef287adf772efbc44ef558f69ff66 415 Pfam PF03631 Virulence factor BrkB 30 277 4.2E-52 T 10-10-2018 IPR017039 Virulence factor BrkB AMQ28_10410 34eef287adf772efbc44ef558f69ff66 415 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 278 1.3E-56 T 10-10-2018 IPR017039 Virulence factor BrkB AMQ28_10410 34eef287adf772efbc44ef558f69ff66 415 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 2 302 21.055 T 10-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.3E-53 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 10-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 Gene3D G3DSA:2.40.150.20 1 122 9.7E-54 T 10-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.858 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 SUPERFAMILY SSF50193 1 122 1.57E-50 T 10-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 3.6E-57 T 10-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMQ28_10235 e1102c3270b3d43aa537b7381f58b3f2 122 SMART SM01374 1 122 1.9E-84 T 10-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 PIRSF PIRSF006769 7 364 6.9E-121 T 10-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 Gene3D G3DSA:3.40.140.10 2 149 1.0E-45 T 10-10-2018 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 59 97 - T 10-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 SUPERFAMILY SSF53927 12 153 8.5E-47 T 10-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 Pfam PF01872 RibD C-terminal domain 156 356 1.0E-40 T 10-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 108 1.3E-19 T 10-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 16 357 1.6E-115 T 10-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 SUPERFAMILY SSF53597 153 358 1.96E-50 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 Gene3D G3DSA:3.40.430.10 150 367 4.8E-68 T 10-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMQ28_06860 3cad8a91a4b9e26002a8cc1847ff9121 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 155 359 2.0E-48 T 10-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AMQ28_08380 d93a57202962d56472b61728989d2f7b 150 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 5 150 37.786 T 10-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMQ28_08380 d93a57202962d56472b61728989d2f7b 150 PIRSF PIRSF006173 1 150 1.1E-65 T 10-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMQ28_08380 d93a57202962d56472b61728989d2f7b 150 Pfam PF03692 Putative zinc- or iron-chelating domain 27 95 9.7E-9 T 10-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 78 3.3E-12 T 10-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 Pfam PF13098 Thioredoxin-like domain 108 226 7.1E-26 T 10-10-2018 IPR012336 Thioredoxin-like fold AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 SUPERFAMILY SSF54423 30 81 1.88E-10 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 Gene3D G3DSA:3.40.30.10 99 231 3.5E-32 T 10-10-2018 AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 ProSitePatterns PS00194 Thioredoxin family active site. 115 133 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 SUPERFAMILY SSF52833 90 227 2.07E-27 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08130 156e4e9bc952cf85c0e0a0b25f6e479e 233 Gene3D G3DSA:3.10.450.70 19 83 9.2E-10 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 Pfam PF00270 DEAD/DEAH box helicase 27 199 2.4E-46 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 Pfam PF00271 Helicase conserved C-terminal domain 246 349 1.1E-25 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 SMART SM00490 268 349 8.1E-32 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 Gene3D G3DSA:3.40.50.300 1 227 1.7E-71 T 10-10-2018 AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 SMART SM00487 22 231 1.7E-55 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 162 170 - T 10-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 Gene3D G3DSA:3.40.50.300 228 389 3.8E-47 T 10-10-2018 AMQ28_10070 60d6d9e7fef45fe335bf27ebe6646109 650 SUPERFAMILY SSF52540 84 369 2.04E-68 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 SMART SM00487 258 480 7.0E-7 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 4 701 4.1E-188 T 10-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Pfam PF04851 Type III restriction enzyme, res subunit 266 447 8.7E-16 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 SUPERFAMILY SSF52540 227 504 1.11E-23 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Pfam PF11867 Domain of unknown function (DUF3387) 701 1029 6.2E-118 T 10-10-2018 IPR021810 Protein of unknown function DUF3387 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Gene3D G3DSA:3.90.1570.50 99 256 1.9E-27 T 10-10-2018 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Gene3D G3DSA:3.40.50.300 466 707 3.4E-46 T 10-10-2018 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Gene3D G3DSA:3.40.50.300 262 465 1.3E-49 T 10-10-2018 AMQ28_10750 f3f7f41388d2cab3cf3ac4a367a4bbd3 1033 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 2 207 7.9E-41 T 10-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 Pfam PF00121 Triosephosphate isomerase 9 255 3.8E-83 T 10-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 250 1.3E-54 T 10-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 6 258 55.005 T 10-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 Gene3D G3DSA:3.20.20.70 5 263 1.7E-87 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 ProSitePatterns PS00171 Triosephosphate isomerase active site. 176 186 - T 10-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_06615 170b12b86cfefe9fdecd7b49254a2c24 263 SUPERFAMILY SSF51351 7 259 1.03E-81 T 10-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_01750 6bb593cd7e254216468d7e88a03b653f 260 PIRSF PIRSF009320 85 259 1.2E-9 T 10-10-2018 AMQ28_01750 6bb593cd7e254216468d7e88a03b653f 260 PIRSF PIRSF009320 2 84 5.5E-16 T 10-10-2018 AMQ28_01750 6bb593cd7e254216468d7e88a03b653f 260 Pfam PF13614 AAA domain 3 177 1.5E-59 T 10-10-2018 IPR025669 AAA domain AMQ28_01750 6bb593cd7e254216468d7e88a03b653f 260 Gene3D G3DSA:3.40.50.300 2 259 7.5E-79 T 10-10-2018 AMQ28_01750 6bb593cd7e254216468d7e88a03b653f 260 SUPERFAMILY SSF52540 1 252 9.69E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13690 7342970024463cb792723b364c2f10d4 205 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 159 187 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMQ28_13690 7342970024463cb792723b364c2f10d4 205 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 151 185 3.8E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13690 7342970024463cb792723b364c2f10d4 205 Gene3D G3DSA:2.160.10.10 40 204 2.0E-42 T 10-10-2018 AMQ28_13690 7342970024463cb792723b364c2f10d4 205 SUPERFAMILY SSF51161 50 204 7.07E-36 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 184 25.187 T 10-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 SUPERFAMILY SSF55194 1 184 6.54E-66 T 10-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 Gene3D G3DSA:3.30.1360.40 31 104 1.8E-61 T 10-10-2018 AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 184 2.2E-64 T 10-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 Pfam PF01765 Ribosome recycling factor 21 182 1.0E-57 T 10-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AMQ28_13825 67494f0c4ad902ff0d6ab18bd210dcef 184 Gene3D G3DSA:1.10.132.20 12 181 1.8E-61 T 10-10-2018 AMQ28_05300 feea9b440da9e0e22ac2805cf276cd56 165 SUPERFAMILY SSF50475 5 137 2.36E-17 T 10-10-2018 AMQ28_05300 feea9b440da9e0e22ac2805cf276cd56 165 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 6 153 5.3E-34 T 10-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain AMQ28_05300 feea9b440da9e0e22ac2805cf276cd56 165 Gene3D G3DSA:2.30.110.10 2 163 6.9E-40 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 Gene3D G3DSA:3.30.230.40 1 91 1.0E-37 T 10-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 10-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 10-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 1.5E-63 T 10-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 40.992 T 10-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 SUPERFAMILY SSF54211 4 88 3.29E-33 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 Gene3D G3DSA:3.30.230.40 92 197 1.3E-37 T 10-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMQ28_09190 bfe1b88d4b9a11b685e17da412201048 197 SUPERFAMILY SSF54211 90 180 5.94E-35 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 127 156 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 297 314 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 210 238 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 165 194 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 93 122 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 PRINTS PR00142 RecA protein signature 243 272 5.0E-83 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 SMART SM00382 57 228 1.1E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 ProSitePatterns PS00321 recA signature. 213 221 - T 10-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 Hamap MF_00268 Protein RecA [recA]. 5 329 51.523 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 Gene3D G3DSA:3.40.50.300 26 267 1.2E-84 T 10-10-2018 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 1.2E-170 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 Gene3D G3DSA:3.30.250.10 269 327 1.7E-23 T 10-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 SUPERFAMILY SSF54752 269 325 6.15E-19 T 10-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 Pfam PF00154 recA bacterial DNA recombination protein 7 268 5.9E-148 T 10-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMQ28_13885 987e2402d3ce1b4369b8493f9ca947c8 347 SUPERFAMILY SSF52540 3 267 1.07E-68 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08290 e06b946ec016ffeb17d41985eec77b3f 189 SUPERFAMILY SSF53098 42 184 2.43E-5 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08290 e06b946ec016ffeb17d41985eec77b3f 189 Pfam PF01609 Transposase DDE domain 93 183 1.2E-6 T 10-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 SUPERFAMILY SSF102114 41 119 1.57E-13 T 10-10-2018 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 PIRSF PIRSF000370 16 236 2.1E-65 T 10-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 Pfam PF13394 4Fe-4S single cluster domain 39 120 8.1E-11 T 10-10-2018 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 Pfam PF04055 Radical SAM superfamily 42 127 6.5E-13 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 Gene3D G3DSA:3.20.20.70 18 230 4.1E-36 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 233 36.598 T 10-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMQ28_03030 3454b3d85eec8a0f0025695f4a6bb7ab 236 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 236 2.4E-99 T 10-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 SMART SM00729 183 403 4.9E-57 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 32 477 68.755 T 10-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Pfam PF04055 Radical SAM superfamily 187 361 4.9E-28 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Gene3D G3DSA:3.40.50.12160 32 165 8.5E-35 T 10-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Pfam PF01938 TRAM domain 415 477 5.3E-10 T 10-10-2018 IPR002792 TRAM domain AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 SUPERFAMILY SSF102114 165 407 1.44E-60 T 10-10-2018 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 33 470 3.5E-174 T 10-10-2018 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Gene3D G3DSA:3.80.30.20 181 415 2.4E-79 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 Pfam PF00919 Uncharacterized protein family UPF0004 33 133 4.0E-29 T 10-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 187 207 - T 10-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMQ28_10465 20215feb08cd53c684925c97b05802c7 484 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 33 468 2.5E-140 T 10-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMQ28_12435 464e12c1e82e3c2603649a3be025ee01 258 PIRSF PIRSF006157 1 258 2.5E-81 T 10-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AMQ28_12435 464e12c1e82e3c2603649a3be025ee01 258 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 257 4.2E-42 T 10-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMQ28_12435 464e12c1e82e3c2603649a3be025ee01 258 SUPERFAMILY SSF53213 6 258 1.26E-79 T 10-10-2018 AMQ28_12435 464e12c1e82e3c2603649a3be025ee01 258 Gene3D G3DSA:3.40.830.10 1 258 1.4E-83 T 10-10-2018 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 584 607 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 413 432 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 547 558 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 650 673 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 727 754 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 622 644 1.3E-46 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 716 738 - T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 Pfam PF02867 Ribonucleotide reductase, barrel domain 338 872 2.0E-183 T 10-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 261 332 5.2E-19 T 10-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 264 874 1.3E-211 T 10-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 Pfam PF03477 ATP cone domain 123 202 1.3E-5 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 Pfam PF03477 ATP cone domain 12 109 5.8E-18 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 SUPERFAMILY SSF48168 128 336 2.62E-58 T 10-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 Gene3D G3DSA:3.20.70.20 219 882 3.6E-247 T 10-10-2018 AMQ28_04590 20264745603c30491d0b57d4bc3d29e6 943 SUPERFAMILY SSF51998 337 874 7.94E-183 T 10-10-2018 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Pfam PF00271 Helicase conserved C-terminal domain 472 580 2.1E-11 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 SMART SM00490 496 580 5.8E-15 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Gene3D G3DSA:2.30.30.140 5 57 1.9E-24 T 10-10-2018 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Pfam PF12137 RNA polymerase recycling family C-terminal 585 942 1.1E-118 T 10-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Pfam PF00176 SNF2 family N-terminal domain 180 353 1.7E-11 T 10-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Gene3D G3DSA:3.40.50.300 432 612 3.9E-38 T 10-10-2018 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 SUPERFAMILY SSF52540 159 372 1.69E-35 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Gene3D G3DSA:3.30.360.80 691 762 4.4E-21 T 10-10-2018 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 SMART SM00487 156 355 2.5E-20 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Gene3D G3DSA:3.40.50.10810 156 429 7.7E-85 T 10-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 5 943 26.437 T 10-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 AMQ28_02035 cd0b92e20a14f360e958c7d979ef0d13 945 SUPERFAMILY SSF52540 282 619 1.85E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10075 61298b30e2ecd3c4a8b516c9ab1c6772 271 Gene3D G3DSA:3.40.50.300 9 263 1.6E-66 T 10-10-2018 AMQ28_10075 61298b30e2ecd3c4a8b516c9ab1c6772 271 SUPERFAMILY SSF52540 11 242 5.7E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10075 61298b30e2ecd3c4a8b516c9ab1c6772 271 SMART SM00382 36 224 3.7E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_10075 61298b30e2ecd3c4a8b516c9ab1c6772 271 Pfam PF00005 ABC transporter 27 176 1.5E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_05785 d9b6f0bdb9648c26c78225c6001deeaf 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 1.2E-30 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMQ28_05785 d9b6f0bdb9648c26c78225c6001deeaf 66 SUPERFAMILY SSF140319 3 64 1.23E-25 T 10-10-2018 IPR036762 IscX-like superfamily AMQ28_05785 d9b6f0bdb9648c26c78225c6001deeaf 66 PIRSF PIRSF039003 3 66 1.8E-34 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMQ28_05785 d9b6f0bdb9648c26c78225c6001deeaf 66 Gene3D G3DSA:1.10.10.600 1 66 6.9E-27 T 10-10-2018 IPR036762 IscX-like superfamily AMQ28_05785 d9b6f0bdb9648c26c78225c6001deeaf 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 1.0E-30 T 10-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMQ28_01085 f2aafae1209fa97dbb83a8f58c73b6a1 496 Pfam PF01425 Amidase 27 475 1.2E-76 T 10-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_01085 f2aafae1209fa97dbb83a8f58c73b6a1 496 ProSitePatterns PS00571 Amidases signature. 150 181 - T 10-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMQ28_01085 f2aafae1209fa97dbb83a8f58c73b6a1 496 Gene3D G3DSA:3.90.1300.10 4 495 3.1E-149 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_01085 f2aafae1209fa97dbb83a8f58c73b6a1 496 SUPERFAMILY SSF75304 2 484 6.28E-116 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_14045 43f68a6cda9ad22383203d439e87354e 144 Pfam PF01230 HIT domain 10 98 8.5E-12 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_14045 43f68a6cda9ad22383203d439e87354e 144 SUPERFAMILY SSF54197 1 132 9.78E-30 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_14045 43f68a6cda9ad22383203d439e87354e 144 PIRSF PIRSF000714 1 138 1.7E-46 T 10-10-2018 IPR026026 Histidine triad hydrolase, Hint-type AMQ28_14045 43f68a6cda9ad22383203d439e87354e 144 Gene3D G3DSA:3.30.428.10 1 136 1.1E-37 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 1.3E-16 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Gene3D G3DSA:2.40.110.10 161 281 1.0E-92 T 10-10-2018 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Gene3D G3DSA:1.10.540.10 44 160 1.0E-92 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 SUPERFAMILY SSF56645 38 279 1.83E-56 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 584 3.5E-24 T 10-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 9.3E-17 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 1.9E-6 T 10-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 SUPERFAMILY SSF47203 288 474 3.38E-46 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Gene3D G3DSA:1.20.140.10 282 451 1.0E-92 T 10-10-2018 AMQ28_11010 e411e7c08e3447f9bc36d067a896dd83 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 3.9E-15 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 SUPERFAMILY SSF54565 1 75 7.32E-28 T 10-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 10-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 Gene3D G3DSA:3.30.1320.10 1 82 5.4E-31 T 10-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.301 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 Pfam PF00886 Ribosomal protein S16 8 68 1.6E-24 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09880 50b92b795bffb37259d667d190eb9f48 85 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.0E-28 T 10-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 SUPERFAMILY SSF52833 1 100 1.34E-26 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.2E-62 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 2.2E-230 T 10-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 Pfam PF13192 Thioredoxin domain 120 194 6.3E-10 T 10-10-2018 IPR012336 Thioredoxin-like fold AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 SUPERFAMILY SSF52833 103 196 3.73E-21 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 492 2.6E-45 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 Gene3D G3DSA:3.40.30.80 1 199 1.2E-62 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 Gene3D G3DSA:3.50.50.60 212 509 2.7E-106 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PIRSF PIRSF000238 1 521 4.2E-251 T 10-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 10-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.3E-38 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.3E-38 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.3E-38 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.3E-38 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.3E-38 T 10-10-2018 AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 Gene3D G3DSA:3.50.50.60 327 450 2.7E-106 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_01875 fb010f6cf9a15fe70410bb44a46848b9 521 SUPERFAMILY SSF51905 206 516 1.06E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 SUPERFAMILY SSF53067 2 182 2.1E-65 T 10-10-2018 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 SUPERFAMILY SSF53067 186 381 3.95E-67 T 10-10-2018 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Gene3D G3DSA:3.90.640.10 228 315 1.0E-165 T 10-10-2018 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Gene3D G3DSA:2.60.34.10 382 522 1.7E-63 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 SUPERFAMILY SSF100920 384 539 1.44E-58 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 387 406 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 137 157 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 364 384 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 468 484 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 53 61 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 197 207 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 333 349 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.3E-77 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 2.2E-282 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 SUPERFAMILY SSF100934 534 609 1.22E-9 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Gene3D G3DSA:3.30.420.40 5 378 1.0E-165 T 10-10-2018 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 641 36.085 T 10-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Gene3D G3DSA:3.30.420.40 179 365 1.0E-165 T 10-10-2018 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Pfam PF00012 Hsp70 protein 4 602 1.1E-259 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMQ28_08000 0b41f6900db210d72b767855eb68f5e2 646 Gene3D G3DSA:1.20.1270.10 523 602 4.2E-20 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 514 717 1.0E-46 T 10-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 Gene3D G3DSA:3.40.50.300 450 725 2.6E-73 T 10-10-2018 AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 Pfam PF02706 Chain length determinant protein 9 100 4.1E-19 T 10-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 SUPERFAMILY SSF52540 532 710 1.51E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 Pfam PF13614 AAA domain 545 691 2.0E-11 T 10-10-2018 IPR025669 AAA domain AMQ28_07780 25524b0dc441ec019e6abd12a56e64f3 727 Pfam PF13807 G-rich domain on putative tyrosine kinase 377 458 1.2E-30 T 10-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.2E-24 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 6.2E-15 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 6.2E-15 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 6.2E-15 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 6.2E-15 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 Gene3D G3DSA:1.20.5.1150 16 54 1.2E-20 T 10-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 Pfam PF01165 Ribosomal protein S21 3 55 4.1E-22 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 10-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 5.0E-10 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_02170 c349c11dd68e8fcbfad6a09541def5d4 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 10-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10910 d0cbdbbaf44f86120142725a09d39e3a 269 SUPERFAMILY SSF88713 49 247 4.45E-44 T 10-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMQ28_10910 d0cbdbbaf44f86120142725a09d39e3a 269 Gene3D G3DSA:3.20.20.370 28 263 3.6E-65 T 10-10-2018 AMQ28_10910 d0cbdbbaf44f86120142725a09d39e3a 269 Pfam PF01522 Polysaccharide deacetylase 84 225 1.2E-30 T 10-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 SUPERFAMILY SSF111337 1 340 2.09E-124 T 10-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 44.058 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 340 1.2E-134 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 Gene3D G3DSA:3.40.1780.10 14 340 9.1E-114 T 10-10-2018 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 Gene3D G3DSA:2.40.10.240 63 159 9.1E-114 T 10-10-2018 AMQ28_10880 97b94f75f5717d6c85a6476c5ee92659 345 Pfam PF02547 Queuosine biosynthesis protein 3 340 2.8E-124 T 10-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 254 265 - T 10-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 PIRSF PIRSF036492 2 482 2.1E-159 T 10-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 Pfam PF00171 Aldehyde dehydrogenase family 3 447 3.5E-93 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 Gene3D G3DSA:3.40.309.10 230 432 2.6E-151 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 226 233 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 Gene3D G3DSA:3.40.605.10 30 452 2.6E-151 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_05930 861d44a3692d9fd24c477a28f151804b 482 SUPERFAMILY SSF53720 6 454 8.64E-117 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 SUPERFAMILY SSF50249 15 157 1.6E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 SUPERFAMILY SSF55681 164 505 1.19E-113 T 10-10-2018 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 Gene3D G3DSA:3.30.930.10 160 508 5.0E-126 T 10-10-2018 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 Pfam PF00152 tRNA synthetases class II (D, K and N) 165 504 1.3E-78 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 389 405 7.9E-38 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 246 259 7.9E-38 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 201 211 7.9E-38 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 217 233 7.9E-38 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 264 281 7.9E-38 T 10-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 507 43.403 T 10-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 Gene3D G3DSA:2.40.50.140 8 159 8.8E-34 T 10-10-2018 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 19 506 7.8E-197 T 10-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMQ28_03810 657ccb27f496ee731de393aae3df3662 508 Pfam PF01336 OB-fold nucleic acid binding domain 75 148 5.8E-10 T 10-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMQ28_05650 76d8802fbee6c4850249b4df1a0908a7 140 Pfam PF09335 SNARE associated Golgi protein 18 136 4.8E-13 T 10-10-2018 IPR032816 SNARE associated Golgi protein AMQ28_05650 76d8802fbee6c4850249b4df1a0908a7 140 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 20 130 0.002 T 10-10-2018 IPR020143 Uncharacterised protein family, RP436 AMQ28_00820 fa3915401763e3f9c66d2b776b8a23c6 72 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 11 53 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMQ28_00820 fa3915401763e3f9c66d2b776b8a23c6 72 SUPERFAMILY SSF46689 11 60 8.96E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00820 fa3915401763e3f9c66d2b776b8a23c6 72 Pfam PF12833 Helix-turn-helix domain 1 58 3.0E-11 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_00820 fa3915401763e3f9c66d2b776b8a23c6 72 Gene3D G3DSA:1.10.10.60 4 61 5.3E-14 T 10-10-2018 AMQ28_00820 fa3915401763e3f9c66d2b776b8a23c6 72 SMART SM00342 1 57 0.0041 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 SUPERFAMILY SSF111369 59 305 1.03E-79 T 10-10-2018 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Gene3D G3DSA:2.40.30.170 57 308 5.8E-105 T 10-10-2018 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Pfam PF00529 HlyD membrane-fusion protein of T1SS 299 365 1.1E-9 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Gene3D G3DSA:2.40.420.20 309 378 5.8E-105 T 10-10-2018 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 380 1.1E-80 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Gene3D G3DSA:2.40.50.100 70 214 5.8E-105 T 10-10-2018 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Gene3D G3DSA:1.10.287.470 105 178 5.8E-105 T 10-10-2018 AMQ28_11945 aee9b50793739b48c9d8eb17a979ca23 419 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 298 2.6E-15 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 SUPERFAMILY SSF52440 1 103 7.77E-36 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 330 420 4.4E-28 T 10-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 SUPERFAMILY SSF56059 104 319 1.73E-64 T 10-10-2018 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Gene3D G3DSA:3.30.1490.20 122 190 7.9E-28 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Gene3D G3DSA:3.90.600.10 329 423 3.6E-33 T 10-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 4.6E-34 T 10-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 SUPERFAMILY SSF51246 328 423 9.42E-31 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 1.2E-174 T 10-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 42.676 T 10-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 7.7E-85 T 10-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Gene3D G3DSA:3.40.50.20 2 95 4.7E-36 T 10-10-2018 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 SMART SM01209 103 296 2.7E-137 T 10-10-2018 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 SMART SM01210 329 422 9.8E-49 T 10-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 10-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMQ28_13760 825ed46ed2407fe979f4b2f1de5576e3 427 Gene3D G3DSA:3.30.470.20 191 328 2.6E-57 T 10-10-2018 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 SUPERFAMILY SSF56059 99 303 1.4E-55 T 10-10-2018 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 SUPERFAMILY SSF52440 9 99 4.51E-26 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 Gene3D G3DSA:3.30.470.20 89 289 4.3E-77 T 10-10-2018 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 10-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 246 274 - T 10-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 8 304 33.974 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 Pfam PF01820 D-ala D-ala ligase N-terminus 9 88 1.7E-16 T 10-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 9 303 7.9E-99 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 Pfam PF07478 D-ala D-ala ligase C-terminus 107 300 2.9E-53 T 10-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 Gene3D G3DSA:3.40.50.20 1 87 1.2E-32 T 10-10-2018 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 PIRSF PIRSF039102 5 52 1.1E-7 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_08620 bc1a8371c435525be659404f329ad01a 309 PIRSF PIRSF039102 41 309 9.1E-80 T 10-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 SUPERFAMILY SSF50129 1 148 1.42E-38 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 1.9E-12 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 SUPERFAMILY SSF51735 115 296 1.23E-42 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 Gene3D G3DSA:3.40.50.720 123 299 7.4E-106 T 10-10-2018 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 Gene3D G3DSA:3.90.180.10 9 328 7.4E-106 T 10-10-2018 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 10-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 Pfam PF13602 Zinc-binding dehydrogenase 185 328 7.9E-36 T 10-10-2018 AMQ28_03600 f073704eecb97be7faa2850f40d40983 332 SMART SM00829 10 328 9.8E-54 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_12490 b00233bda11d25d8320b8cd8f9e099fa 292 Pfam PF13612 Transposase DDE domain 105 258 1.7E-43 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_12285 b00233bda11d25d8320b8cd8f9e099fa 292 Pfam PF13612 Transposase DDE domain 105 258 1.7E-43 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Hamap MF_00942 Endonuclease III [nth]. 9 220 36.968 T 10-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Pfam PF00633 Helix-hairpin-helix motif 111 138 5.8E-9 T 10-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 SMART SM00478 49 196 1.0E-51 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Gene3D G3DSA:1.10.1670.10 22 214 1.6E-75 T 10-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 SUPERFAMILY SSF48150 12 217 2.51E-70 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 PIRSF PIRSF001435 9 220 1.4E-51 T 10-10-2018 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 TIGRFAM TIGR01083 nth: endonuclease III 15 205 3.9E-83 T 10-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Gene3D G3DSA:1.10.340.30 32 143 1.6E-75 T 10-10-2018 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 198 214 6.0E-6 T 10-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 ProSitePatterns PS01155 Endonuclease III family signature. 113 142 - T 10-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 198 214 - T 10-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMQ28_12415 f7a10380c4d747348fd653fef66c1e2b 237 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 45 179 6.7E-17 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 267 4.2E-85 T 10-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 Gene3D G3DSA:3.40.50.150 7 203 3.7E-68 T 10-10-2018 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 SUPERFAMILY SSF53335 10 268 1.22E-77 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 73 - T 10-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 14 267 2.8E-65 T 10-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 Gene3D G3DSA:1.10.8.100 205 270 4.6E-21 T 10-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 SMART SM00650 30 202 3.2E-81 T 10-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMQ28_11245 285364019b8bbf43fb8a385f843dbf41 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 269 57.428 T 10-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 44.238 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 97 108 - T 10-10-2018 IPR018215 ClpP, Ser active site AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 4.8E-106 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 1.8E-51 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 1.8E-51 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 1.8E-51 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 1.8E-51 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 1.8E-51 T 10-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 SUPERFAMILY SSF52096 18 199 6.33E-75 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 Pfam PF00574 Clp protease 20 199 4.4E-88 T 10-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 119 132 - T 10-10-2018 IPR033135 ClpP, histidine active site AMQ28_05525 3cbc304942aef27d2b7a8f2872736eb7 201 Gene3D G3DSA:3.90.226.10 3 201 1.2E-83 T 10-10-2018 AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 SUPERFAMILY SSF51338 32 437 4.94E-7 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 Gene3D G3DSA:2.30.40.10 10 429 9.3E-200 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 Pfam PF01979 Amidohydrolase family 73 434 3.6E-72 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 Gene3D G3DSA:3.20.20.140 76 393 9.3E-200 T 10-10-2018 AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 SUPERFAMILY SSF51556 75 378 1.32E-102 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_08145 30c2753a3e7831e0dcadfc4911ba1fec 438 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 32 431 3.0E-192 T 10-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 Gene3D G3DSA:3.20.20.450 435 685 1.1E-93 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 SUPERFAMILY SSF141868 438 682 8.5E-85 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 Pfam PF03707 Bacterial signalling protein N terminal repeat 116 172 2.2E-5 T 10-10-2018 IPR005330 MHYT domain AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 261 420 4.0E-37 T 10-10-2018 IPR000160 GGDEF domain AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 SUPERFAMILY SSF55073 266 422 4.55E-43 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 SMART SM00267 250 421 1.7E-48 T 10-10-2018 IPR000160 GGDEF domain AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 Gene3D G3DSA:3.30.70.270 256 434 1.7E-49 T 10-10-2018 AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 Pfam PF00563 EAL domain 438 673 6.8E-70 T 10-10-2018 IPR001633 EAL domain AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 417 5.4E-42 T 10-10-2018 IPR000160 GGDEF domain AMQ28_05445 0bc4cce2490e640fc070f24bb085042f 688 SMART SM00052 432 678 4.3E-110 T 10-10-2018 IPR001633 EAL domain AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 Pfam PF03462 PCRF domain 13 203 6.7E-73 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 SUPERFAMILY SSF75620 12 353 5.76E-135 T 10-10-2018 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 4.7E-161 T 10-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 SMART SM00937 63 178 8.0E-65 T 10-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.188 T 10-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 Gene3D G3DSA:3.30.160.20 210 297 1.4E-94 T 10-10-2018 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 Pfam PF00472 RF-1 domain 213 321 6.2E-40 T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 10-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMQ28_01330 7f939dcb25b378ea08460d60ad1f9b97 362 Gene3D G3DSA:3.30.70.1660 112 342 1.4E-94 T 10-10-2018 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 SUPERFAMILY SSF52540 5 648 1.86E-157 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Gene3D G3DSA:1.10.10.160 112 188 2.9E-91 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 5 678 39.08 T 10-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Gene3D G3DSA:1.10.486.10 384 553 4.4E-118 T 10-10-2018 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Gene3D G3DSA:3.40.50.300 8 273 2.9E-91 T 10-10-2018 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Pfam PF13361 UvrD-like helicase C-terminal domain 278 622 4.7E-69 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 272 6.5E-71 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMQ28_11515 4a3604b33d0bf7e5a59f79933ff70107 679 Gene3D G3DSA:3.40.50.300 281 641 4.4E-118 T 10-10-2018 AMQ28_01265 707307f4b847596f7ed2f5a0b8ce18eb 211 SUPERFAMILY SSF47240 48 181 2.06E-16 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_01265 707307f4b847596f7ed2f5a0b8ce18eb 211 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 50 209 4.8E-44 T 10-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMQ28_01265 707307f4b847596f7ed2f5a0b8ce18eb 211 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 11 211 30.042 T 10-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMQ28_01265 707307f4b847596f7ed2f5a0b8ce18eb 211 Gene3D G3DSA:1.20.1260.10 42 194 2.0E-5 T 10-10-2018 IPR012347 Ferritin-like AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.8E-26 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 3.8E-26 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 3.8E-26 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 3.8E-26 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 Pfam PF01494 FAD binding domain 5 345 1.8E-88 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 SUPERFAMILY SSF51905 5 389 1.18E-49 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 SUPERFAMILY SSF54373 177 277 2.39E-44 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 Gene3D G3DSA:3.30.9.10 76 389 1.2E-163 T 10-10-2018 AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 Gene3D G3DSA:3.50.50.60 5 353 1.2E-163 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_00890 3915d8b9d92fcbcfb53670f6405ab472 400 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 4 392 1.1E-210 T 10-10-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 Gene3D G3DSA:3.50.50.60 319 490 6.6E-24 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 SUPERFAMILY SSF51905 283 485 1.25E-14 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 SUPERFAMILY SSF51905 13 471 4.49E-52 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 175 199 1.2E-7 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 136 144 1.2E-7 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 14 36 1.2E-7 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 16 193 9.1E-19 T 10-10-2018 AMQ28_12215 2770b64ab055f9cd729d0dd54aa3cdb1 491 Gene3D G3DSA:3.50.50.60 2 172 1.1E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09850 b8604850d89ef8debe41733c14826bc8 169 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 9 137 1.2E-30 T 10-10-2018 IPR013362 Pilus modification type IV, PilV AMQ28_09850 b8604850d89ef8debe41733c14826bc8 169 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 3.9E-4 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09850 b8604850d89ef8debe41733c14826bc8 169 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 1.9E-5 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Gene3D G3DSA:3.20.20.450 698 947 4.7E-95 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SUPERFAMILY SSF55073 529 687 3.37E-31 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Gene3D G3DSA:3.30.450.20 285 391 1.0E-15 T 10-10-2018 AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SMART SM00052 695 940 1.3E-104 T 10-10-2018 IPR001633 EAL domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SMART SM00267 513 685 3.6E-23 T 10-10-2018 IPR000160 GGDEF domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 400 520 4.7E-14 T 10-10-2018 IPR000014 PAS domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 318 394 3.0E-6 T 10-10-2018 IPR000014 PAS domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Pfam PF00990 Diguanylate cyclase, GGDEF domain 525 680 4.0E-27 T 10-10-2018 IPR000160 GGDEF domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SUPERFAMILY SSF55785 316 389 3.98E-9 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Gene3D G3DSA:3.30.450.20 396 522 6.9E-20 T 10-10-2018 AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Pfam PF08447 PAS fold 316 382 3.6E-12 T 10-10-2018 IPR013655 PAS fold-3 GO:0005515 AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Gene3D G3DSA:3.30.70.270 523 697 5.0E-35 T 10-10-2018 AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 526 683 1.5E-16 T 10-10-2018 IPR000160 GGDEF domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Pfam PF00563 EAL domain 701 935 2.2E-74 T 10-10-2018 IPR001633 EAL domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SUPERFAMILY SSF141868 700 948 3.27E-85 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SUPERFAMILY SSF55785 408 520 3.38E-17 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 Pfam PF13426 PAS domain 408 512 8.3E-10 T 10-10-2018 IPR000014 PAS domain AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SMART SM00086 471 513 0.0017 T 10-10-2018 IPR001610 PAC motif AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SMART SM00086 345 389 0.028 T 10-10-2018 IPR001610 PAC motif AMQ28_03420 514e209014a98c764b2744fc6bdd67bc 953 SMART SM00091 397 462 0.0059 T 10-10-2018 IPR000014 PAS domain AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 SUPERFAMILY SSF110849 39 133 2.3E-28 T 10-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 Gene3D G3DSA:1.10.10.2830 118 230 4.2E-36 T 10-10-2018 AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 SUPERFAMILY SSF109709 124 232 8.37E-35 T 10-10-2018 AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 Gene3D G3DSA:3.90.1530.30 52 117 1.0E-27 T 10-10-2018 AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 Pfam PF02195 ParB-like nuclease domain 40 131 3.1E-26 T 10-10-2018 IPR003115 ParB/Sulfiredoxin AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 215 1.6E-57 T 10-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMQ28_01745 9425065a65b4beef19b9f1c62c1b9e02 295 SMART SM00470 39 131 4.3E-33 T 10-10-2018 IPR003115 ParB/Sulfiredoxin AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 5 88 4.3E-33 T 10-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 SUPERFAMILY SSF54719 90 200 4.19E-42 T 10-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 Gene3D G3DSA:1.10.287.990 21 88 2.8E-25 T 10-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 Gene3D G3DSA:2.40.500.20 91 207 1.2E-41 T 10-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PIRSF PIRSF000349 1 208 7.3E-80 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 10-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 SUPERFAMILY SSF46609 3 88 6.55E-35 T 10-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 9.4E-37 T 10-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 1.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 1.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 1.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PRINTS PR01703 Manganese superoxide dismutase signature 71 84 1.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_12820 55f31353ab8eced6825c7e3fc34d5523 208 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 1.0E-21 T 10-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 PIRSF PIRSF000094 3 263 6.1E-114 T 10-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 Gene3D G3DSA:3.40.50.720 1 267 3.4E-62 T 10-10-2018 AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 255 1.1E-85 T 10-10-2018 AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 SUPERFAMILY SSF51735 8 257 7.27E-63 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_05335 c9e70aa7818d2f71f6d8394283bf3b37 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 116 443 3.7E-123 T 10-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Pfam PF13188 PAS domain 119 161 1.5E-4 T 10-10-2018 IPR000014 PAS domain AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 SUPERFAMILY SSF47384 213 291 2.55E-20 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 SUPERFAMILY SSF55874 279 445 6.16E-42 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Pfam PF11808 Domain of unknown function (DUF3329) 27 106 1.3E-13 T 10-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Gene3D G3DSA:3.30.450.20 107 221 1.6E-6 T 10-10-2018 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Gene3D G3DSA:3.30.565.10 292 450 1.8E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 SMART SM00388 224 290 1.5E-20 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 SMART SM00387 335 447 4.4E-34 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 446 5.0E-23 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Gene3D G3DSA:1.10.287.130 222 291 8.8E-23 T 10-10-2018 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 1.9E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 400 1.9E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 1.9E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.9E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_07215 e35c398e47b44ba3cc073cbba6137d7b 453 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 289 4.2E-18 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_02080 477df2baf8e079670b058131cacc1c70 206 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 4 185 7.5E-47 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_02080 477df2baf8e079670b058131cacc1c70 206 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 1 203 21.045 T 10-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_02080 477df2baf8e079670b058131cacc1c70 206 Gene3D G3DSA:3.20.20.70 3 200 4.9E-50 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02080 477df2baf8e079670b058131cacc1c70 206 Pfam PF02581 Thiamine monophosphate synthase 4 183 3.7E-51 T 10-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_02080 477df2baf8e079670b058131cacc1c70 206 SUPERFAMILY SSF51391 3 185 5.1E-50 T 10-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 10 511 2.9E-156 T 10-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 Pfam PF00361 Proton-conducting membrane transporter 139 441 1.8E-66 T 10-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 348 367 3.8E-34 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 400 426 3.8E-34 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 260 284 3.8E-34 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 145 164 3.8E-34 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04510 0e00236f4914527048e75a95d26740da 536 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 180 204 3.8E-34 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_12945 1e36d346eebe2fc9b3e6f157a4238e6f 408 PIRSF PIRSF029171 5 408 4.2E-82 T 10-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 AMQ28_12945 1e36d346eebe2fc9b3e6f157a4238e6f 408 Gene3D G3DSA:3.40.50.1820 39 246 1.3E-50 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12945 1e36d346eebe2fc9b3e6f157a4238e6f 408 Pfam PF12697 Alpha/beta hydrolase family 96 386 1.5E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_12945 1e36d346eebe2fc9b3e6f157a4238e6f 408 Gene3D G3DSA:3.40.50.1820 327 406 1.4E-5 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12945 1e36d346eebe2fc9b3e6f157a4238e6f 408 SUPERFAMILY SSF53474 63 403 5.63E-27 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 402 3.5E-100 T 10-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 Gene3D G3DSA:3.30.9.50 84 283 3.4E-89 T 10-10-2018 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 308 321 - T 10-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 Gene3D G3DSA:3.50.50.60 10 351 3.4E-89 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 SUPERFAMILY SSF51905 10 396 4.07E-50 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 Pfam PF01494 FAD binding domain 10 356 4.0E-30 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 1.3E-19 T 10-10-2018 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 1.3E-19 T 10-10-2018 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 325 1.3E-19 T 10-10-2018 AMQ28_12530 dbcf574e26df23c057886d7bf9d65ece 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 1.3E-19 T 10-10-2018 AMQ28_09415 e8e1c813fe93ba997ece5cf62f39f645 168 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 163 26.106 T 10-10-2018 IPR022973 Ribosomal protein L10 AMQ28_09415 e8e1c813fe93ba997ece5cf62f39f645 168 SUPERFAMILY SSF160369 5 162 2.09E-43 T 10-10-2018 AMQ28_09415 e8e1c813fe93ba997ece5cf62f39f645 168 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 10-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_09415 e8e1c813fe93ba997ece5cf62f39f645 168 Pfam PF00466 Ribosomal protein L10 6 103 1.3E-23 T 10-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMQ28_09415 e8e1c813fe93ba997ece5cf62f39f645 168 Gene3D G3DSA:3.30.70.1730 1 126 4.8E-32 T 10-10-2018 AMQ28_05585 67eed0b849493befd13ca802f13ba5c0 208 Pfam PF01725 Ham1 family 12 203 1.5E-52 T 10-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMQ28_05585 67eed0b849493befd13ca802f13ba5c0 208 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 12 206 1.6E-53 T 10-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMQ28_05585 67eed0b849493befd13ca802f13ba5c0 208 Hamap MF_01405 dITP/XTP pyrophosphatase. 10 208 47.149 T 10-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 AMQ28_05585 67eed0b849493befd13ca802f13ba5c0 208 Gene3D G3DSA:3.90.950.10 8 208 6.0E-69 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_05585 67eed0b849493befd13ca802f13ba5c0 208 SUPERFAMILY SSF52972 7 206 8.63E-66 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_00185 9a02761fa915ed285a5ad9d56c1d4aa1 183 SUPERFAMILY SSF46689 57 165 1.49E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00185 9a02761fa915ed285a5ad9d56c1d4aa1 183 Pfam PF13518 Helix-turn-helix domain 8 53 6.6E-6 T 10-10-2018 AMQ28_00185 9a02761fa915ed285a5ad9d56c1d4aa1 183 Pfam PF13518 Helix-turn-helix domain 64 118 8.2E-12 T 10-10-2018 AMQ28_00185 9a02761fa915ed285a5ad9d56c1d4aa1 183 SUPERFAMILY SSF48295 3 56 2.3E-8 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 SUPERFAMILY SSF51735 3 243 1.3E-54 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.7E-6 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.7E-6 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-6 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 Pfam PF00106 short chain dehydrogenase 3 194 6.7E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 Gene3D G3DSA:3.40.50.720 2 243 7.3E-55 T 10-10-2018 AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.2E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 7.2E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.2E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 7.2E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_00425 9a3b7e58542436260bbddb8be4298889 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.2E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 Gene3D G3DSA:3.40.50.12280 19 190 3.9E-70 T 10-10-2018 AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 44 179 7.2E-68 T 10-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 25 179 42.685 T 10-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 146 162 - T 10-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 SUPERFAMILY SSF56770 43 182 1.09E-63 T 10-10-2018 AMQ28_04560 206d9e90062c0e2d5d020c8378db5071 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 87 172 3.1E-22 T 10-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Gene3D G3DSA:3.40.50.10490 245 611 1.9E-140 T 10-10-2018 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 612 2.3E-251 T 10-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 SUPERFAMILY SSF53697 244 612 1.48E-106 T 10-10-2018 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 SUPERFAMILY SSF56235 2 222 3.35E-70 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Gene3D G3DSA:3.60.20.10 2 237 3.2E-76 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Pfam PF13522 Glutamine amidotransferase domain 66 180 2.4E-20 T 10-10-2018 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Pfam PF01380 SIS domain 466 594 1.2E-27 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Pfam PF01380 SIS domain 292 420 2.9E-28 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Gene3D G3DSA:3.40.50.10490 450 597 1.9E-140 T 10-10-2018 AMQ28_07670 21688f9ead3ec09c6c107e2b21840e40 612 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 612 40.218 T 10-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMQ28_04455 7837dc79fd9b85849897b7bd236942b9 293 Gene3D G3DSA:3.40.50.1100 18 284 4.4E-57 T 10-10-2018 AMQ28_04455 7837dc79fd9b85849897b7bd236942b9 293 SUPERFAMILY SSF53686 19 287 1.14E-50 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_04455 7837dc79fd9b85849897b7bd236942b9 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 281 8.0E-17 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_04455 7837dc79fd9b85849897b7bd236942b9 293 Gene3D G3DSA:3.40.50.1100 37 142 4.4E-57 T 10-10-2018 AMQ28_04455 7837dc79fd9b85849897b7bd236942b9 293 PIRSF PIRSF006278 6 293 1.4E-68 T 10-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AMQ28_02940 ba86de3f977c624b72540671b453303a 124 Pfam PF16137 Domain of unknown function (DUF4845) 33 112 1.7E-14 T 10-10-2018 IPR032314 Protein of unknown function DUF4845 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Gene3D G3DSA:3.40.190.10 181 265 1.3E-58 T 10-10-2018 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 SUPERFAMILY SSF53850 101 285 9.56E-61 T 10-10-2018 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 SUPERFAMILY SSF55021 271 365 4.23E-27 T 10-10-2018 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Gene3D G3DSA:1.20.59.10 14 100 9.9E-30 T 10-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Gene3D G3DSA:3.30.70.260 279 368 1.9E-28 T 10-10-2018 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 SUPERFAMILY SSF48600 11 97 1.42E-19 T 10-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 PIRSF PIRSF001500 7 369 2.1E-134 T 10-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 TIGRFAM TIGR01807 CM_P2: chorismate mutase 15 89 7.0E-26 T 10-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Gene3D G3DSA:3.40.190.10 103 274 1.3E-58 T 10-10-2018 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Pfam PF00800 Prephenate dehydratase 101 278 1.8E-62 T 10-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 SMART SM00830 18 99 4.8E-28 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 252 274 - T 10-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Pfam PF01842 ACT domain 287 351 1.1E-11 T 10-10-2018 IPR002912 ACT domain AMQ28_02480 3e8bee783e91d5b740988de5784a33d9 369 Pfam PF01817 Chorismate mutase type II 18 96 9.1E-22 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 SMART SM00962 164 365 1.7E-120 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 SMART SM00382 163 343 1.8E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 Gene3D G3DSA:3.40.50.300 162 353 5.4E-114 T 10-10-2018 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 Pfam PF00448 SRP54-type protein, GTPase domain 164 364 2.3E-76 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 Pfam PF02881 SRP54-type protein, helical bundle domain 84 145 9.4E-11 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 92 365 60.352 T 10-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 93 364 6.6E-108 T 10-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 338 351 - T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 SUPERFAMILY SSF47364 63 143 5.89E-19 T 10-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 Gene3D G3DSA:1.20.120.140 65 363 5.4E-114 T 10-10-2018 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 SMART SM00963 68 149 4.9E-22 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00140 5007266f2f1d2684c82cc2535efa3d50 368 SUPERFAMILY SSF52540 162 365 3.24E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 388 531 1.4E-48 T 10-10-2018 IPR001162 UvrC family homology region AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 SMART SM00465 19 100 5.9E-23 T 10-10-2018 IPR000305 GIY-YIG endonuclease AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Pfam PF02151 UvrB/uvrC motif 208 240 5.8E-7 T 10-10-2018 IPR001943 UVR domain GO:0005515 AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Gene3D G3DSA:3.30.420.340 377 541 1.1E-52 T 10-10-2018 IPR038476 UvrC homology region 2 superfamily AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Gene3D G3DSA:1.10.150.20 544 598 2.0E-17 T 10-10-2018 AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 578 1.8E-175 T 10-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 SUPERFAMILY SSF47781 510 598 2.35E-22 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 SUPERFAMILY SSF46600 193 246 3.14E-12 T 10-10-2018 IPR036876 UVR domain superfamily AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Gene3D G3DSA:3.40.1440.10 5 104 3.3E-31 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Pfam PF01541 GIY-YIG catalytic domain 21 95 3.7E-9 T 10-10-2018 IPR000305 GIY-YIG endonuclease AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 SUPERFAMILY SSF82771 19 102 4.05E-23 T 10-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMQ28_09275 2b37cd80e5f960174f8d5dd4e0da1575 599 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 596 26.43 T 10-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 Gene3D G3DSA:3.40.720.10 10 509 6.6E-203 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 SUPERFAMILY SSF53649 11 511 3.4E-68 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 PIRSF PIRSF001492 4 514 1.2E-191 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 SUPERFAMILY SSF64158 82 310 5.89E-78 T 10-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 511 4.4E-215 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 9 512 47.724 T 10-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 Pfam PF01676 Metalloenzyme superfamily 11 499 1.5E-74 T 10-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 Gene3D G3DSA:3.40.1450.10 82 312 6.6E-203 T 10-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_06810 29b644a97f075ca869b744053dc098fa 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 87 299 3.3E-74 T 10-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 SUPERFAMILY SSF89550 3 254 1.37E-13 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 SMART SM00481 4 71 2.6E-14 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 986 0.0 T 10-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 Gene3D G3DSA:3.20.20.140 1 261 7.1E-78 T 10-10-2018 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 Gene3D G3DSA:1.10.10.1600 428 511 4.8E-25 T 10-10-2018 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 Pfam PF14579 Helix-hairpin-helix motif 800 888 5.9E-26 T 10-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 288 725 1.6E-164 T 10-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_13740 2cc2bd0374e98946c89b6bef350784e9 1187 Pfam PF02811 PHP domain 5 161 2.1E-27 T 10-10-2018 IPR004013 PHP domain GO:0003824 AMQ28_06085 b59a80850ec25b1a16d23ebd1fe1a14f 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.8E-82 T 10-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMQ28_06085 b59a80850ec25b1a16d23ebd1fe1a14f 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.103 T 10-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMQ28_06085 b59a80850ec25b1a16d23ebd1fe1a14f 216 Pfam PF00694 Aconitase C-terminal domain 1 131 5.2E-36 T 10-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMQ28_06085 b59a80850ec25b1a16d23ebd1fe1a14f 216 SUPERFAMILY SSF52016 1 204 1.69E-59 T 10-10-2018 AMQ28_06085 b59a80850ec25b1a16d23ebd1fe1a14f 216 Gene3D G3DSA:3.20.19.10 1 184 1.8E-74 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 Gene3D G3DSA:2.30.30.230 1 119 4.4E-39 T 10-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 Pfam PF09298 Fumarylacetoacetase N-terminal 20 122 3.7E-28 T 10-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 7 420 4.4E-179 T 10-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 SUPERFAMILY SSF63433 6 122 3.14E-35 T 10-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 Gene3D G3DSA:3.90.850.10 120 422 3.1E-126 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 SUPERFAMILY SSF56529 124 420 5.1E-101 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_13605 dff0413fb7ad85dc32ca6b1542bee2de 438 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 128 417 4.9E-58 T 10-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 PIRSF PIRSF001549 6 363 6.4E-35 T 10-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 Gene3D G3DSA:3.30.930.10 5 325 1.6E-58 T 10-10-2018 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 15 324 1.3E-82 T 10-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 Pfam PF13393 Histidyl-tRNA synthetase 12 322 4.3E-97 T 10-10-2018 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 367 24.779 T 10-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AMQ28_02390 74c4a69d93bca636ad60843c2d06ac43 388 SUPERFAMILY SSF55681 7 319 2.71E-50 T 10-10-2018 AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 SUPERFAMILY SSF47616 83 208 3.48E-20 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 Pfam PF14497 Glutathione S-transferase, C-terminal domain 136 203 1.1E-5 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 4.3E-17 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 SUPERFAMILY SSF52833 1 80 5.49E-19 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 Gene3D G3DSA:1.20.1050.10 84 208 9.8E-25 T 10-10-2018 AMQ28_07220 51d35ba30828cf65becfa37f01436418 215 Gene3D G3DSA:3.40.30.10 1 83 1.9E-31 T 10-10-2018 AMQ28_14245 9b3da531571b917d8f0209081aa76810 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 17 279 48.055 T 10-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_14245 9b3da531571b917d8f0209081aa76810 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 22 277 6.9E-114 T 10-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_14245 9b3da531571b917d8f0209081aa76810 285 SUPERFAMILY SSF51569 8 281 1.83E-100 T 10-10-2018 AMQ28_14245 9b3da531571b917d8f0209081aa76810 285 Pfam PF00793 DAHP synthetase I family 14 276 8.3E-72 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_14245 9b3da531571b917d8f0209081aa76810 285 Gene3D G3DSA:3.20.20.70 5 285 5.3E-96 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Gene3D G3DSA:3.30.70.270 217 398 1.7E-45 T 10-10-2018 AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Gene3D G3DSA:3.20.20.450 399 652 2.3E-72 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 SUPERFAMILY SSF55785 14 120 4.36E-10 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 SUPERFAMILY SSF141868 403 648 2.75E-68 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 378 6.6E-40 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Pfam PF00563 EAL domain 403 635 2.4E-59 T 10-10-2018 IPR001633 EAL domain AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 225 383 2.0E-36 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Pfam PF08447 PAS fold 32 97 2.5E-6 T 10-10-2018 IPR013655 PAS fold-3 GO:0005515 AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 Gene3D G3DSA:3.30.450.20 10 118 3.9E-11 T 10-10-2018 AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 SUPERFAMILY SSF55073 228 384 1.1E-42 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 SMART SM00267 212 384 9.1E-42 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08385 5f6d86edd964ee23ac139d974051914e 653 SMART SM00052 397 641 1.7E-60 T 10-10-2018 IPR001633 EAL domain AMQ28_10980 2212cea18eb3fda03cf621d6b54ff60d 254 Pfam PF13803 Domain of unknown function (DUF4184) 1 216 1.7E-34 T 10-10-2018 IPR025238 Protein of unknown function DUF4184 AMQ28_00455 41a2373aad3272722f98a01be99ebe1f 466 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 10-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMQ28_00455 41a2373aad3272722f98a01be99ebe1f 466 PIRSF PIRSF006060 1 464 3.7E-78 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_00455 41a2373aad3272722f98a01be99ebe1f 466 Gene3D G3DSA:1.20.1740.10 8 465 2.9E-64 T 10-10-2018 AMQ28_00455 41a2373aad3272722f98a01be99ebe1f 466 Pfam PF00324 Amino acid permease 17 449 8.5E-109 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 Pfam PF00005 ABC transporter 18 164 1.6E-36 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 SUPERFAMILY SSF50331 240 348 4.36E-5 T 10-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 SMART SM00382 27 214 1.3E-20 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 Gene3D G3DSA:3.40.50.300 2 313 2.6E-81 T 10-10-2018 AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 Pfam PF12857 TOBE-like domain 286 343 2.0E-8 T 10-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 SUPERFAMILY SSF52540 3 244 6.9E-86 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03010 36d1b3dbaf9ba2563fcb71ffa02dd71b 353 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 4.4E-121 T 10-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 AMQ28_13170 27d5d62bac8e50e3a40238cc5480c9dc 357 Gene3D G3DSA:3.30.1930.10 176 298 1.4E-40 T 10-10-2018 AMQ28_13170 27d5d62bac8e50e3a40238cc5480c9dc 357 Pfam PF03864 Phage major capsid protein E 20 353 1.4E-45 T 10-10-2018 IPR005564 Major capsid protein GpE AMQ28_13170 27d5d62bac8e50e3a40238cc5480c9dc 357 Gene3D G3DSA:3.15.30.10 38 345 1.4E-40 T 10-10-2018 AMQ28_05765 fd30a3d2ce7e459d4d59bba02693ee4c 261 Pfam PF13464 Domain of unknown function (DUF4115) 188 259 1.3E-10 T 10-10-2018 IPR025194 Domain of unknown function DUF4115 AMQ28_05765 fd30a3d2ce7e459d4d59bba02693ee4c 261 Pfam PF13413 Helix-turn-helix domain 28 87 7.4E-19 T 10-10-2018 AMQ28_05765 fd30a3d2ce7e459d4d59bba02693ee4c 261 Gene3D G3DSA:1.10.260.40 17 106 1.0E-21 T 10-10-2018 AMQ28_00775 3359f8b5cac27cb8c9224dbd766f5432 253 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 3 253 5.7E-131 T 10-10-2018 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 AMQ28_00775 3359f8b5cac27cb8c9224dbd766f5432 253 Pfam PF03818 Malonate/sodium symporter MadM subunit 2 60 3.7E-22 T 10-10-2018 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal AMQ28_10140 56957a178037619b2bf72d526e38b695 412 Gene3D G3DSA:1.10.3860.10 1 411 2.1E-124 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 SUPERFAMILY SSF118215 3 403 4.97E-108 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 47 67 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 229 248 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 2.7E-56 T 10-10-2018 AMQ28_10140 56957a178037619b2bf72d526e38b695 412 Pfam PF00375 Sodium:dicarboxylate symporter family 3 403 3.4E-119 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 Pfam PF04397 LytTr DNA-binding domain 150 243 7.2E-21 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 SMART SM00448 1 111 3.2E-31 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 SMART SM00850 147 244 3.2E-27 T 10-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 Gene3D G3DSA:2.40.50.40 138 206 1.8E-10 T 10-10-2018 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 Pfam PF00072 Response regulator receiver domain 3 111 1.0E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 SUPERFAMILY SSF52172 1 180 1.34E-35 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_09305 2b0099df71af35eaeed7e1f3fbb24c71 246 Gene3D G3DSA:3.40.50.2300 1 132 3.2E-37 T 10-10-2018 AMQ28_11960 540da4457e8fc40f69132762f3dbaeb9 325 SUPERFAMILY SSF48576 6 323 3.04E-94 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMQ28_11960 540da4457e8fc40f69132762f3dbaeb9 325 Pfam PF00348 Polyprenyl synthetase 35 263 5.8E-73 T 10-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMQ28_11960 540da4457e8fc40f69132762f3dbaeb9 325 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 206 218 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMQ28_11960 540da4457e8fc40f69132762f3dbaeb9 325 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 99 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMQ28_11960 540da4457e8fc40f69132762f3dbaeb9 325 Gene3D G3DSA:1.10.600.10 3 324 5.0E-107 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 163 4.5E-18 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Gene3D G3DSA:1.10.1670.10 9 209 2.2E-81 T 10-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 SMART SM00478 39 188 3.9E-36 T 10-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Gene3D G3DSA:1.10.340.30 21 130 2.2E-81 T 10-10-2018 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 SUPERFAMILY SSF48150 6 223 2.36E-72 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Gene3D G3DSA:3.90.79.10 223 343 1.9E-16 T 10-10-2018 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 ProSitePatterns PS01155 Endonuclease III family signature. 100 127 - T 10-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Pfam PF00633 Helix-hairpin-helix motif 99 125 7.8E-6 T 10-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 Pfam PF14815 NUDIX domain 233 340 3.1E-20 T 10-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 10-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 SUPERFAMILY SSF55811 218 341 8.43E-20 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_07805 1faa25c5e18a4f2259576a2bf342a540 344 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 269 2.1E-103 T 10-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Gene3D G3DSA:3.30.1390.30 85 160 4.4E-47 T 10-10-2018 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 609 49.221 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 605 4.3E-216 T 10-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 SUPERFAMILY SSF56519 56 249 4.19E-51 T 10-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Gene3D G3DSA:3.90.1310.10 64 245 4.4E-47 T 10-10-2018 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 SUPERFAMILY SSF56601 250 605 1.88E-94 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Gene3D G3DSA:3.40.710.10 249 611 1.8E-98 T 10-10-2018 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 602 9.8E-71 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMQ28_12390 7b9ac527b4acc4234bd17261d5fa9df4 670 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 234 5.3E-45 T 10-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMQ28_10570 6abcb334f3ff723a253c592b0417fd1f 141 Pfam PF03061 Thioesterase superfamily 27 99 1.1E-17 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_10570 6abcb334f3ff723a253c592b0417fd1f 141 SUPERFAMILY SSF54637 8 130 4.31E-34 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_10570 6abcb334f3ff723a253c592b0417fd1f 141 Gene3D G3DSA:3.10.129.10 2 138 1.9E-37 T 10-10-2018 AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 Gene3D G3DSA:3.40.50.1100 46 151 1.1E-111 T 10-10-2018 AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 SUPERFAMILY SSF53686 17 303 3.93E-94 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 TIGRFAM TIGR01138 cysM: cysteine synthase B 16 303 8.8E-146 T 10-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 292 5.8E-71 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 TIGRFAM TIGR01136 cysKM: cysteine synthase 17 303 2.1E-123 T 10-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 Gene3D G3DSA:3.40.50.1100 19 299 1.1E-111 T 10-10-2018 AMQ28_10830 2642514ade9b23e1721891245cd2bfdd 309 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 41 59 - T 10-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMQ28_05310 1b3c5d5ee756b7beb9f074e96bd78204 183 SUPERFAMILY SSF53098 5 180 1.9E-45 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05310 1b3c5d5ee756b7beb9f074e96bd78204 183 SMART SM00479 8 181 1.4E-18 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_05310 1b3c5d5ee756b7beb9f074e96bd78204 183 Gene3D G3DSA:3.30.420.10 1 183 3.6E-73 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_05310 1b3c5d5ee756b7beb9f074e96bd78204 183 Pfam PF00929 Exonuclease 10 171 1.5E-33 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_05310 1b3c5d5ee756b7beb9f074e96bd78204 183 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 42.797 T 10-10-2018 IPR022894 Oligoribonuclease GO:0000175 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Gene3D G3DSA:3.65.10.10 318 734 2.0E-166 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 314 743 33.036 T 10-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 ProSitePatterns PS00885 EPSP synthase signature 2. 647 665 - T 10-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 314 735 5.1E-117 T 10-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Gene3D G3DSA:3.40.50.720 6 183 5.0E-50 T 10-10-2018 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 SUPERFAMILY SSF48179 181 288 4.31E-33 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Pfam PF02153 Prephenate dehydrogenase 27 278 4.2E-69 T 10-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 318 740 4.1E-128 T 10-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 SUPERFAMILY SSF55205 309 741 4.41E-131 T 10-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Gene3D G3DSA:3.65.10.10 326 536 2.0E-166 T 10-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 ProSitePatterns PS00104 EPSP synthase signature 1. 393 407 - T 10-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 Gene3D G3DSA:1.10.3660.10 184 288 4.0E-35 T 10-10-2018 AMQ28_02475 6fbb0db57fbf03d985b86b2d4d16f672 748 SUPERFAMILY SSF51735 8 176 2.04E-43 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Pfam PF13538 UvrD-like helicase C-terminal domain 510 556 9.1E-14 T 10-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Gene3D G3DSA:3.40.50.300 92 311 2.3E-50 T 10-10-2018 AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 59 580 1.3E-123 T 10-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Gene3D G3DSA:3.40.50.300 459 571 7.6E-20 T 10-10-2018 AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 SUPERFAMILY SSF52540 126 562 1.52E-50 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Pfam PF13604 AAA domain 127 324 5.2E-32 T 10-10-2018 AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Gene3D G3DSA:3.40.50.300 312 453 1.8E-10 T 10-10-2018 AMQ28_06480 4c8db9e3adb34ee1b0595d9305f6b784 587 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 10 579 39.326 T 10-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AMQ28_03960 d14aacd519ca59dcd18c0e85792a3f6b 430 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 13 415 7.4E-180 T 10-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 AMQ28_03960 d14aacd519ca59dcd18c0e85792a3f6b 430 Pfam PF13641 Glycosyltransferase like family 2 53 277 2.8E-37 T 10-10-2018 AMQ28_03960 d14aacd519ca59dcd18c0e85792a3f6b 430 Gene3D G3DSA:3.90.550.10 33 267 3.3E-42 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_03960 d14aacd519ca59dcd18c0e85792a3f6b 430 SUPERFAMILY SSF53448 48 324 5.12E-61 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 345 2.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 2.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 2.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 SMART SM00387 292 406 3.2E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 Gene3D G3DSA:1.10.287.130 150 244 3.2E-10 T 10-10-2018 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 SUPERFAMILY SSF47384 165 244 1.75E-11 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 SMART SM00388 179 247 1.3E-6 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 296 405 1.8E-20 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 Gene3D G3DSA:3.30.565.10 250 404 2.6E-35 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_10890 30404af52333900996eb5c20c4d8860c 423 SUPERFAMILY SSF55874 237 408 4.71E-36 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_02285 997ec4e4eb814c376aaf8dbb7ad5fee8 106 Gene3D G3DSA:3.30.70.100 1 105 1.5E-26 T 10-10-2018 AMQ28_02285 997ec4e4eb814c376aaf8dbb7ad5fee8 106 SUPERFAMILY SSF54909 1 99 1.94E-23 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_02285 997ec4e4eb814c376aaf8dbb7ad5fee8 106 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 86 6.4E-17 T 10-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMQ28_00045 9ebd698317f412af68b8c692ab1a4e26 89 Gene3D G3DSA:1.20.58.1690 6 83 1.3E-5 T 10-10-2018 IPR038434 YARHG domain superfamily AMQ28_00045 9ebd698317f412af68b8c692ab1a4e26 89 SMART SM01324 11 84 2.6E-8 T 10-10-2018 IPR025582 YARHG domain AMQ28_00045 9ebd698317f412af68b8c692ab1a4e26 89 Pfam PF13308 YARHG domain 25 83 2.7E-8 T 10-10-2018 IPR025582 YARHG domain AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 Gene3D G3DSA:3.90.1280.10 231 287 1.4E-16 T 10-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 SUPERFAMILY SSF118352 231 286 8.24E-14 T 10-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 Pfam PF01430 Hsp33 protein 6 278 7.3E-70 T 10-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 PIRSF PIRSF005261 1 289 1.4E-63 T 10-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 Gene3D G3DSA:3.55.30.10 2 175 2.4E-49 T 10-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 Gene3D G3DSA:1.10.287.480 182 230 3.5E-16 T 10-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily AMQ28_06435 442c00487616092192cbe1d96fd9db92 291 SUPERFAMILY SSF64397 4 237 9.94E-59 T 10-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMQ28_07770 54eddea25a4cc05e3e55cc042912c4e3 367 Gene3D G3DSA:3.10.560.10 48 337 1.6E-78 T 10-10-2018 AMQ28_07770 54eddea25a4cc05e3e55cc042912c4e3 367 Pfam PF02563 Polysaccharide biosynthesis/export protein 75 162 2.7E-21 T 10-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMQ28_07770 54eddea25a4cc05e3e55cc042912c4e3 367 Gene3D G3DSA:3.30.1950.10 82 166 1.6E-78 T 10-10-2018 AMQ28_07770 54eddea25a4cc05e3e55cc042912c4e3 367 Gene3D G3DSA:3.10.560.10 60 252 1.6E-78 T 10-10-2018 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 PIRSF PIRSF000728 12 295 1.2E-108 T 10-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 28 270 7.3E-78 T 10-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 SUPERFAMILY SSF53633 7 295 4.32E-94 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 Hamap MF_00082 Acetylglutamate kinase [argB]. 26 288 50.591 T 10-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 Gene3D G3DSA:3.40.1160.10 3 296 2.0E-99 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 Pfam PF00696 Amino acid kinase family 27 272 1.1E-44 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 PRINTS PR00474 Glutamate 5-kinase family signature 58 72 1.9E-6 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 PRINTS PR00474 Glutamate 5-kinase family signature 245 265 1.9E-6 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_11530 dd5bf6b486169d09a8e948ea7e4065da 298 PRINTS PR00474 Glutamate 5-kinase family signature 195 222 1.9E-6 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 Gene3D G3DSA:1.10.3730.40 182 338 2.0E-71 T 10-10-2018 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 PIRSF PIRSF000116 2 206 2.3E-52 T 10-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 PIRSF PIRSF000116 201 333 2.8E-13 T 10-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 SUPERFAMILY SSF51735 1 182 6.96E-74 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 Gene3D G3DSA:3.40.50.720 1 181 4.2E-78 T 10-10-2018 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 SUPERFAMILY SSF48179 183 332 5.1E-66 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.387 T 10-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 4.8E-131 T 10-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 1.2E-74 T 10-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_05825 6cc714bc8f0dfd8298ae4bbf2de1984a 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 6.2E-60 T 10-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMQ28_11300 47e96d8279990195bfc59d730d9ef874 437 Pfam PF00083 Sugar (and other) transporter 21 429 6.3E-30 T 10-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMQ28_11300 47e96d8279990195bfc59d730d9ef874 437 SUPERFAMILY SSF103473 15 432 1.96E-66 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11300 47e96d8279990195bfc59d730d9ef874 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 302 317 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_11300 47e96d8279990195bfc59d730d9ef874 437 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 27 419 1.4E-139 T 10-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 AMQ28_11300 47e96d8279990195bfc59d730d9ef874 437 Gene3D G3DSA:1.20.1250.20 16 436 7.6E-66 T 10-10-2018 AMQ28_08995 acf5bc33125dcc05331d0d12c13f569a 258 SUPERFAMILY SSF54637 19 108 1.62E-10 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_08995 acf5bc33125dcc05331d0d12c13f569a 258 Pfam PF13622 Thioesterase-like superfamily 22 255 5.1E-33 T 10-10-2018 AMQ28_08995 acf5bc33125dcc05331d0d12c13f569a 258 SUPERFAMILY SSF54637 117 256 1.09E-16 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_08995 acf5bc33125dcc05331d0d12c13f569a 258 Gene3D G3DSA:3.10.129.90 4 257 1.5E-56 T 10-10-2018 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 Pfam PF12848 ABC transporter 230 303 1.4E-10 T 10-10-2018 IPR032781 ABC-transporter extension domain AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 Gene3D G3DSA:3.40.50.300 1 286 7.9E-82 T 10-10-2018 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 SUPERFAMILY SSF52540 302 531 1.84E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 Pfam PF00005 ABC transporter 22 191 3.4E-27 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 Gene3D G3DSA:3.40.50.300 287 551 6.8E-72 T 10-10-2018 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 ProSitePatterns PS00211 ABC transporters family signature. 445 459 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 551 5.3E-282 T 10-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 SMART SM00382 348 521 8.7E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 SMART SM00382 31 242 9.9E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 Pfam PF00005 ABC transporter 340 473 2.6E-22 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_09545 3b5af61b503f844dbba19a013510c23d 553 SUPERFAMILY SSF52540 9 243 5.33E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 SUPERFAMILY SSF56645 4 247 1.83E-86 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 PIRSF PIRSF016578 131 390 6.2E-13 T 10-10-2018 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 PIRSF PIRSF016578 13 99 0.019 T 10-10-2018 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Gene3D G3DSA:1.20.140.10 239 388 1.1E-41 T 10-10-2018 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 385 2.0E-37 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.0E-26 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 SUPERFAMILY SSF47203 233 388 4.03E-42 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 123 3.9E-35 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Gene3D G3DSA:2.40.110.10 126 238 5.6E-46 T 10-10-2018 AMQ28_00700 bddca8228a033f4c987c66034b9f45b1 390 Gene3D G3DSA:1.10.540.10 2 125 4.2E-44 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 SUPERFAMILY SSF53383 28 356 6.6E-73 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 Gene3D G3DSA:3.90.1150.10 26 350 6.4E-107 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 13 358 1.9E-92 T 10-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 Gene3D G3DSA:3.40.640.10 44 268 6.4E-107 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 Pfam PF00155 Aminotransferase class I and II 31 355 1.5E-51 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_05130 ce40cfe4d47e7af283e1ea05e95a9235 362 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 361 55.818 T 10-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 PRINTS PR00332 Histidine triad family signature 8 24 4.1E-18 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 PRINTS PR00332 Histidine triad family signature 29 47 4.1E-18 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 PRINTS PR00332 Histidine triad family signature 96 106 4.1E-18 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 Gene3D G3DSA:3.30.428.10 1 137 5.5E-37 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 SUPERFAMILY SSF54197 1 136 1.5E-37 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_00040 47312441e6bf8fe3d2de3d6d1181c5a0 137 Pfam PF01230 HIT domain 15 108 6.1E-26 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_03635 ed1d9dc016c9aafc464e137cb8ad1c61 301 Hamap MF_00188 Protease HtpX [htpX]. 1 298 25.044 T 10-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AMQ28_03635 ed1d9dc016c9aafc464e137cb8ad1c61 301 Gene3D G3DSA:3.30.2010.10 74 165 8.7E-33 T 10-10-2018 AMQ28_03635 ed1d9dc016c9aafc464e137cb8ad1c61 301 Pfam PF01435 Peptidase family M48 82 298 3.2E-40 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 SUPERFAMILY SSF55620 2 181 6.23E-73 T 10-10-2018 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 10-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 Pfam PF01227 GTP cyclohydrolase I 4 179 6.7E-72 T 10-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 Gene3D G3DSA:3.30.1130.10 51 183 2.5E-58 T 10-10-2018 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 3 180 5.3E-70 T 10-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 Gene3D G3DSA:1.10.286.10 1 48 1.5E-17 T 10-10-2018 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 34.437 T 10-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMQ28_12735 3a3fae0b3312a52c27790fc031e5eb2c 184 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 10-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 SUPERFAMILY SSF54909 65 144 4.11E-15 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 45 2.2E-8 T 10-10-2018 AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 SUPERFAMILY SSF46785 2 90 4.85E-9 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 7.0E-18 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 Gene3D G3DSA:3.30.70.920 56 140 4.3E-21 T 10-10-2018 AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 SMART SM00344 3 112 1.4E-23 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMQ28_13395 e5405bbd96e24492019f7b5250e3b512 156 Gene3D G3DSA:1.10.10.10 1 55 5.4E-9 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04170 08f9f4a09039e32c22c33cbf4081c3d7 127 Gene3D G3DSA:3.40.50.12740 7 127 5.1E-40 T 10-10-2018 AMQ28_04170 08f9f4a09039e32c22c33cbf4081c3d7 127 SUPERFAMILY SSF52172 6 125 2.13E-38 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_04170 08f9f4a09039e32c22c33cbf4081c3d7 127 SMART SM00448 8 121 1.6E-38 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04170 08f9f4a09039e32c22c33cbf4081c3d7 127 Pfam PF00072 Response regulator receiver domain 10 122 2.7E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.7E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 Gene3D G3DSA:1.10.10.10 1 86 6.7E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 SUPERFAMILY SSF46785 1 111 1.41E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 Pfam PF03466 LysR substrate binding domain 92 291 6.2E-49 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 SUPERFAMILY SSF53850 93 291 1.09E-43 T 10-10-2018 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.0E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04485 821b6f7084b387fc83c924b804f702e6 293 Gene3D G3DSA:3.40.190.290 92 293 6.1E-41 T 10-10-2018 AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 Gene3D G3DSA:3.40.47.10 1 252 1.8E-60 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 Gene3D G3DSA:3.40.47.10 258 408 4.2E-45 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 364 5.3E-31 T 10-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 SUPERFAMILY SSF53901 213 407 1.11E-62 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 10-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 7.4E-41 T 10-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 SMART SM00825 Beta-ketoacyl synthase 4 409 1.6E-14 T 10-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMQ28_11415 7292224ffdf15f8465738ee7140c1a50 409 SUPERFAMILY SSF53901 2 251 5.19E-59 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Pfam PF04434 SWIM zinc finger 60 85 1.1E-4 T 10-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Pfam PF00271 Helicase conserved C-terminal domain 949 1058 1.0E-18 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Gene3D G3DSA:3.40.50.10810 651 863 5.5E-68 T 10-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Pfam PF00176 SNF2 family N-terminal domain 652 934 6.6E-67 T 10-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 SUPERFAMILY SSF52540 637 862 3.06E-59 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 SMART SM00490 978 1058 3.7E-23 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 SMART SM00487 646 831 2.4E-32 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Gene3D G3DSA:1.20.120.850 884 1107 1.6E-82 T 10-10-2018 AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 SUPERFAMILY SSF52540 864 1113 3.12E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07405 e73320feefc2aaa314ce406a7673aab8 1115 Gene3D G3DSA:3.40.50.300 869 1072 1.6E-82 T 10-10-2018 AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 3.0E-9 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 3.0E-9 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 Gene3D G3DSA:3.30.700.10 8 151 3.7E-23 T 10-10-2018 AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 SUPERFAMILY SSF54523 8 153 4.94E-23 T 10-10-2018 AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 117 2.4E-12 T 10-10-2018 IPR031982 Type IV minor pilin ComP AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 4.2E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09875 b29e4ca7aeaffd0985730a9455077701 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 6.6E-11 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_11870 490d05ec49560eb56ec2a74f30f58b9d 247 SUPERFAMILY SSF161098 26 223 1.2E-38 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_11870 490d05ec49560eb56ec2a74f30f58b9d 247 Gene3D G3DSA:1.10.3720.10 19 239 4.9E-45 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_11870 490d05ec49560eb56ec2a74f30f58b9d 247 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 237 1.7E-23 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_11870 490d05ec49560eb56ec2a74f30f58b9d 247 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 26 131 1.8E-14 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 Gene3D G3DSA:3.20.20.140 2 343 1.8E-106 T 10-10-2018 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 Hamap MF_00219 Dihydroorotase [pyrC]. 2 344 44.734 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 2.7E-136 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 10-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 Pfam PF01979 Amidohydrolase family 11 310 1.3E-16 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 10-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 PIRSF PIRSF001237 1 344 6.3E-140 T 10-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_12640 fb6e1bb95c86bb0023ff31e3b814a24a 344 SUPERFAMILY SSF51556 2 342 2.08E-140 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 3.9E-26 T 10-10-2018 IPR013185 Translation elongation factor, KOW-like AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 SUPERFAMILY SSF50249 132 189 6.85E-17 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Gene3D G3DSA:2.40.50.140 132 189 9.5E-27 T 10-10-2018 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 SUPERFAMILY SSF50249 69 130 4.71E-14 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Gene3D G3DSA:2.30.30.30 1 65 4.2E-29 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 SMART SM00841 133 188 1.2E-30 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Hamap MF_00141 Elongation factor P [efp]. 3 189 48.562 T 10-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Pfam PF09285 Elongation factor P, C-terminal 133 188 3.4E-24 T 10-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 SMART SM01185 69 125 9.8E-23 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Gene3D G3DSA:2.40.50.140 66 131 2.3E-28 T 10-10-2018 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 PIRSF PIRSF005901 2 189 3.2E-63 T 10-10-2018 IPR020599 Translation elongation factor P/YeiP AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 125 5.4E-20 T 10-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 SUPERFAMILY SSF50104 2 63 2.51E-21 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMQ28_02650 c7e9d475b10d0f30d9a2d3d1e65f873c 189 TIGRFAM TIGR00038 efp: translation elongation factor P 4 189 2.0E-75 T 10-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMQ28_10960 1c7ac2d8996eb292267aa961bcb642e7 316 SUPERFAMILY SSF53756 14 300 6.59E-6 T 10-10-2018 AMQ28_10960 1c7ac2d8996eb292267aa961bcb642e7 316 Pfam PF13524 Glycosyl transferases group 1 225 309 1.2E-10 T 10-10-2018 AMQ28_10960 1c7ac2d8996eb292267aa961bcb642e7 316 Gene3D G3DSA:3.40.50.2000 151 302 2.7E-5 T 10-10-2018 AMQ28_10960 1c7ac2d8996eb292267aa961bcb642e7 316 Pfam PF12996 DUF based on E. rectale Gene description (DUF3880) 121 170 5.5E-5 T 10-10-2018 IPR024542 Domain of unknown function DUF3880 AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 SUPERFAMILY SSF51735 1 272 7.89E-63 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.6E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.6E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.6E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.6E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.6E-23 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 Gene3D G3DSA:3.40.50.720 1 276 3.4E-68 T 10-10-2018 AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.8E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.8E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.8E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07200 d43c64e6413b4529b130121fb40bf7c2 280 Pfam PF00106 short chain dehydrogenase 7 198 2.8E-46 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 1 226 34.906 T 10-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 SMART SM00934 2 222 7.5E-93 T 10-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 Gene3D G3DSA:3.20.20.70 2 225 6.0E-81 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 4 222 4.8E-59 T 10-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 SUPERFAMILY SSF51366 3 225 2.89E-71 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 54 67 - T 10-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_01630 850de781f6ea1cab1fb6aae1e45c1883 226 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 3 221 1.2E-47 T 10-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 3.3E-47 T 10-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.09 T 10-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 10-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 46 1.1E-19 T 10-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 Gene3D G3DSA:3.10.430.100 61 148 4.9E-29 T 10-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 SUPERFAMILY SSF55658 1 56 2.79E-17 T 10-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 4.4E-26 T 10-10-2018 IPR020069 Ribosomal protein L9, C-terminal AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 SUPERFAMILY SSF55653 60 148 2.22E-25 T 10-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMQ28_01415 b1871a4a78d55f0b054e96e6e77de8d5 148 Gene3D G3DSA:3.40.5.10 1 50 1.1E-20 T 10-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 267 6.8E-83 T 10-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 271 38.201 T 10-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 14 270 1.6E-68 T 10-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 SUPERFAMILY SSF53335 12 268 7.36E-50 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 Gene3D G3DSA:3.40.50.150 84 270 1.4E-52 T 10-10-2018 AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 Pfam PF13847 Methyltransferase domain 107 243 1.0E-16 T 10-10-2018 IPR025714 Methyltransferase domain AMQ28_01325 af5af530726d0b909bd47f44c9e3c9b4 272 Gene3D G3DSA:1.10.8.10 2 81 2.4E-16 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 290 306 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 246 270 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 116 138 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 208 224 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 325 344 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00145 Argininosuccinate lyase family signature 157 177 5.1E-67 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 ProSitePatterns PS00163 Fumarate lyases signature. 290 299 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 SUPERFAMILY SSF48557 18 471 5.97E-153 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Gene3D G3DSA:1.10.275.10 40 244 1.5E-191 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Hamap MF_00006 Argininosuccinate lyase [argH]. 17 469 43.749 T 10-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Gene3D G3DSA:1.10.40.30 375 448 1.5E-191 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Gene3D G3DSA:1.20.200.10 134 464 1.5E-191 T 10-10-2018 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Pfam PF14698 Argininosuccinate lyase C-terminal 378 447 1.2E-25 T 10-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 Pfam PF00206 Lyase 21 315 1.1E-77 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 TIGRFAM TIGR00838 argH: argininosuccinate lyase 18 471 3.7E-193 T 10-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00149 Fumarate lyase superfamily signature 246 273 1.2E-29 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.2E-29 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00149 Fumarate lyase superfamily signature 162 180 1.2E-29 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_09295 acb42cd92ce8d3215ddf9f54f45a6b71 476 PRINTS PR00149 Fumarate lyase superfamily signature 290 306 1.2E-29 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 25 280 5.8E-98 T 10-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 SUPERFAMILY SSF51717 11 280 3.92E-99 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 25 40 - T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 Gene3D G3DSA:3.20.20.20 3 283 3.1E-112 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03710 b53230f9da193a188259b2d9664f8819 283 Pfam PF00809 Pterin binding enzyme 26 265 2.1E-83 T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_08785 fbbd593f85fef99871ca50679c8a3e0b 229 Gene3D G3DSA:1.10.287.70 118 217 4.9E-9 T 10-10-2018 AMQ28_08785 fbbd593f85fef99871ca50679c8a3e0b 229 SUPERFAMILY SSF81324 18 215 4.58E-5 T 10-10-2018 AMQ28_08785 fbbd593f85fef99871ca50679c8a3e0b 229 Pfam PF07885 Ion channel 132 214 1.8E-5 T 10-10-2018 IPR013099 Potassium channel domain AMQ28_11695 f02b2a587694e07d3cb128404a463e1e 104 Gene3D G3DSA:1.10.20.60 9 102 2.0E-21 T 10-10-2018 AMQ28_11695 f02b2a587694e07d3cb128404a463e1e 104 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 13 104 3.5E-28 T 10-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMQ28_11695 f02b2a587694e07d3cb128404a463e1e 104 SUPERFAMILY SSF141000 12 102 1.31E-27 T 10-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AMQ28_11695 f02b2a587694e07d3cb128404a463e1e 104 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 11 104 22.793 T 10-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMQ28_11695 f02b2a587694e07d3cb128404a463e1e 104 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 28 99 1.2E-17 T 10-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 34.211 T 10-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 1.8E-93 T 10-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 Gene3D G3DSA:3.30.70.980 85 236 6.7E-52 T 10-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 Gene3D G3DSA:1.10.10.200 1 81 8.1E-33 T 10-10-2018 IPR017856 Integrase-like, N-terminal AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 Pfam PF01709 Transcriptional regulator 5 237 9.9E-90 T 10-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 Gene3D G3DSA:3.30.70.980 130 204 6.7E-52 T 10-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_13400 4b78419391c1d2c6e33be16304279393 249 SUPERFAMILY SSF75625 3 246 4.84E-90 T 10-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 SUPERFAMILY SSF47729 4 94 1.77E-30 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 Gene3D G3DSA:4.10.520.10 2 97 2.1E-34 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.1E-16 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.1E-16 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.1E-16 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 SMART SM00411 4 93 1.6E-37 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 Pfam PF00216 Bacterial DNA-binding protein 4 92 9.6E-30 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 95 3.4E-44 T 10-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMQ28_05280 f65c5d23b638535dc9d65e57db430ca1 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 29.382 T 10-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 SUPERFAMILY SSF52518 315 498 2.22E-56 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 SUPERFAMILY SSF52922 489 623 6.41E-27 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 16 284 3.9E-101 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Gene3D G3DSA:3.40.50.970 313 487 2.2E-66 T 10-10-2018 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 18 624 1.4E-234 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 SUPERFAMILY SSF52518 11 378 3.64E-74 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Pfam PF02779 Transketolase, pyrimidine binding domain 317 476 6.8E-38 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 15 628 41.308 T 10-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Gene3D G3DSA:3.40.50.920 500 630 6.7E-35 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 Pfam PF02780 Transketolase, C-terminal domain 503 619 2.8E-26 T 10-10-2018 IPR033248 Transketolase, C-terminal domain AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 SMART SM00861 316 480 3.8E-65 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_10060 9f65196899de9eb3710927e88977ccbd 636 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 10-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 Pfam PF00593 TonB dependent receptor 217 617 5.5E-42 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 SUPERFAMILY SSF56935 37 617 1.2E-98 T 10-10-2018 AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 44 - T 10-10-2018 IPR010916 TonB box, conserved site AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 Gene3D G3DSA:2.170.130.10 36 160 8.2E-31 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 Gene3D G3DSA:2.40.170.20 162 603 5.9E-71 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_11060 fca8080544119b44ad3567ad4aa17b31 618 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 156 9.2E-23 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 Pfam PF05299 M61 glycyl aminopeptidase 268 384 4.4E-46 T 10-10-2018 IPR007963 Peptidase M61, catalytic domain AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 Gene3D G3DSA:2.60.40.3650 1 172 6.5E-52 T 10-10-2018 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 SUPERFAMILY SSF55486 182 413 1.68E-12 T 10-10-2018 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 PIRSF PIRSF016493 1 568 1.0E-195 T 10-10-2018 IPR024191 Peptidase M61 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 Gene3D G3DSA:2.30.42.10 468 568 8.3E-15 T 10-10-2018 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 Gene3D G3DSA:1.10.390.60 175 445 2.9E-98 T 10-10-2018 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 SUPERFAMILY SSF50156 471 541 6.57E-9 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_12975 8d1ac41d143f808ff1301c499a5f7fa6 568 Pfam PF13180 PDZ domain 471 518 7.3E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Gene3D G3DSA:3.30.70.1050 1 114 6.8E-35 T 10-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 TIGRFAM TIGR00115 tig: trigger factor 12 419 5.2E-140 T 10-10-2018 IPR005215 Trigger factor GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Gene3D G3DSA:1.10.3120.10 115 424 6.9E-95 T 10-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 235 4.9E-16 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 419 1.9E-35 T 10-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 PIRSF PIRSF003095 1 441 2.3E-125 T 10-10-2018 IPR005215 Trigger factor GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 SUPERFAMILY SSF102735 1 127 1.96E-36 T 10-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 SUPERFAMILY SSF109998 247 436 1.57E-42 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 4.9E-41 T 10-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 SUPERFAMILY SSF54534 102 239 2.75E-35 T 10-10-2018 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Hamap MF_00303 Trigger factor [tig]. 1 425 21.626 T 10-10-2018 IPR005215 Trigger factor GO:0015031 AMQ28_05530 ff760a7d27a2f49195fbcc96ba7c5d0b 444 Gene3D G3DSA:3.10.50.40 149 245 6.9E-95 T 10-10-2018 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 199 29.793 T 10-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Gene3D G3DSA:1.10.8.10 152 198 3.4E-13 T 10-10-2018 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 SUPERFAMILY SSF50249 1 62 3.77E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 SMART SM00278 72 91 0.52 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 SMART SM00278 107 126 0.087 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 SUPERFAMILY SSF47781 65 134 5.84E-22 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Pfam PF01330 RuvA N terminal domain 1 61 6.2E-19 T 10-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Pfam PF07499 RuvA, C-terminal domain 155 198 1.1E-12 T 10-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Gene3D G3DSA:1.10.150.20 66 138 8.8E-26 T 10-10-2018 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 SUPERFAMILY SSF46929 153 198 6.67E-9 T 10-10-2018 IPR036267 RuvA, C-terminal domain superfamily AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Gene3D G3DSA:2.40.50.140 1 65 8.4E-23 T 10-10-2018 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 Pfam PF14520 Helix-hairpin-helix domain 71 129 1.1E-17 T 10-10-2018 AMQ28_03100 27df27aff442c237d0ad02e853351eff 200 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 196 2.4E-54 T 10-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMQ28_04675 5b3d007660f6005764266d8673ac45b4 157 Gene3D G3DSA:3.10.350.10 107 155 9.1E-14 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_04675 5b3d007660f6005764266d8673ac45b4 157 SMART SM00257 107 156 3.0E-12 T 10-10-2018 IPR018392 LysM domain AMQ28_04675 5b3d007660f6005764266d8673ac45b4 157 Pfam PF04972 BON domain 34 99 1.6E-8 T 10-10-2018 IPR007055 BON domain AMQ28_04675 5b3d007660f6005764266d8673ac45b4 157 SUPERFAMILY SSF54106 106 156 2.88E-7 T 10-10-2018 AMQ28_04675 5b3d007660f6005764266d8673ac45b4 157 Pfam PF01476 LysM domain 108 156 1.0E-11 T 10-10-2018 IPR018392 LysM domain AMQ28_11370 b32f17ceb98ed726ca994c026f250ac6 431 SUPERFAMILY SSF103473 13 424 1.83E-68 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11370 b32f17ceb98ed726ca994c026f250ac6 431 Gene3D G3DSA:1.20.1250.20 14 426 3.5E-69 T 10-10-2018 AMQ28_11370 b32f17ceb98ed726ca994c026f250ac6 431 Pfam PF00083 Sugar (and other) transporter 21 223 1.2E-26 T 10-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMQ28_11370 b32f17ceb98ed726ca994c026f250ac6 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_11370 b32f17ceb98ed726ca994c026f250ac6 431 Pfam PF07690 Major Facilitator Superfamily 253 425 6.9E-12 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 238 1.4E-89 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 PIRSF PIRSF000386 1 245 4.4E-90 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 225 1.0E-54 T 10-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 SUPERFAMILY SSF75217 1 244 4.71E-95 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 Gene3D G3DSA:3.40.1280.10 1 169 2.1E-62 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 101.914 T 10-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMQ28_09890 f65b53f7de6e492f2989c62257e55c5a 246 Gene3D G3DSA:1.10.1270.20 170 246 4.3E-30 T 10-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 SUPERFAMILY SSF63380 1 88 2.38E-26 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 Gene3D G3DSA:2.40.30.20 101 204 2.4E-33 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 SUPERFAMILY SSF63380 92 193 1.45E-30 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 PIRSF PIRSF000498 1 212 2.1E-76 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 Gene3D G3DSA:2.40.30.20 1 88 4.5E-27 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 3.3E-63 T 10-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 Pfam PF00677 Lumazine binding domain 99 183 8.3E-23 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_06850 b265c3a1e9961cc3fbe50338ba12422d 219 Pfam PF00677 Lumazine binding domain 3 86 1.7E-21 T 10-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 SUPERFAMILY SSF55048 138 202 4.19E-14 T 10-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 Gene3D G3DSA:3.30.70.250 134 207 1.3E-92 T 10-10-2018 AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 14 298 6.9E-101 T 10-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 18 312 3.3E-40 T 10-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 PIRSF PIRSF000446 12 321 7.6E-107 T 10-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 SUPERFAMILY SSF52151 15 318 5.23E-70 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 Gene3D G3DSA:3.40.366.10 17 296 1.3E-92 T 10-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMQ28_04795 7fc156d5573b3a017d2cb52d1c54fb54 328 Pfam PF00698 Acyl transferase domain 17 289 1.9E-35 T 10-10-2018 IPR014043 Acyl transferase AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Gene3D G3DSA:1.10.390.10 287 450 1.6E-58 T 10-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 451 556 1.2E-23 T 10-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 SUPERFAMILY SSF63737 12 200 4.18E-37 T 10-10-2018 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 560 867 8.0E-70 T 10-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 SUPERFAMILY SSF55486 212 456 1.21E-71 T 10-10-2018 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Gene3D G3DSA:1.10.1740.60 202 286 1.6E-37 T 10-10-2018 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Pfam PF01433 Peptidase family M1 domain 215 443 1.6E-54 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 1.9E-8 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 1.9E-8 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 1.9E-8 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 1.9E-8 T 10-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Gene3D G3DSA:2.60.40.1840 451 557 6.0E-25 T 10-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Gene3D G3DSA:2.60.40.1730 22 201 5.8E-64 T 10-10-2018 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 19 866 1.2E-296 T 10-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AMQ28_01570 e4925a7e995f0bbf5e960159f4baabed 869 Gene3D G3DSA:1.25.50.10 558 868 6.7E-68 T 10-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Gene3D G3DSA:2.170.120.12 53 175 1.3E-79 T 10-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 154 1.3E-20 T 10-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Gene3D G3DSA:1.10.150.20 243 327 2.4E-37 T 10-10-2018 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 SUPERFAMILY SSF47789 249 322 6.54E-26 T 10-10-2018 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 306 4.8E-24 T 10-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Gene3D G3DSA:3.30.1360.10 17 225 1.3E-79 T 10-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 SMART SM00662 23 232 2.4E-87 T 10-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 SUPERFAMILY SSF56553 53 176 3.66E-36 T 10-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 314 1.4E-105 T 10-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 315 34.73 T 10-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 225 8.9E-24 T 10-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 SUPERFAMILY SSF55257 6 231 3.45E-31 T 10-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10310 3cd2df75b7ff9713f7cef052c9775c0f 335 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 324 7.0E-35 T 10-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_10125 ebf9b13d22c15631b85eb080bf396a20 266 Pfam PF13460 NAD(P)H-binding 9 194 4.3E-10 T 10-10-2018 IPR016040 NAD(P)-binding domain AMQ28_10125 ebf9b13d22c15631b85eb080bf396a20 266 SUPERFAMILY SSF51735 3 228 2.38E-25 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10125 ebf9b13d22c15631b85eb080bf396a20 266 Gene3D G3DSA:3.40.50.720 1 266 4.9E-53 T 10-10-2018 AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 17 325 45.608 T 10-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 SUPERFAMILY SSF54862 192 334 8.79E-16 T 10-10-2018 AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 Pfam PF08331 Domain of unknown function (DUF1730) 72 150 1.8E-23 T 10-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 Pfam PF13484 4Fe-4S double cluster binding domain 202 266 3.8E-20 T 10-10-2018 AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 203 214 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_13445 6928c3680caa5606b628fe97bab1b334 366 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 24 358 1.9E-140 T 10-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 4.6E-27 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 Gene3D G3DSA:3.40.50.720 1 255 3.8E-77 T 10-10-2018 AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 197 5.9E-4 T 10-10-2018 AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 SUPERFAMILY SSF51735 1 253 3.86E-64 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.8E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.8E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.8E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_01300 38bb7e20441c5c71be9bcfd26039c1d7 256 Pfam PF00106 short chain dehydrogenase 6 205 8.0E-51 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_02675 b7fcfb858680335db7a2cfec81e7c23c 325 Gene3D G3DSA:1.20.1530.20 5 324 2.6E-29 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_02675 b7fcfb858680335db7a2cfec81e7c23c 325 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 317 5.7E-87 T 10-10-2018 IPR016833 Putative sodium bile acid cotransporter AMQ28_02675 b7fcfb858680335db7a2cfec81e7c23c 325 PIRSF PIRSF026166 1 325 1.5E-117 T 10-10-2018 IPR016833 Putative sodium bile acid cotransporter AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 383 6.8E-7 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 262 283 6.8E-7 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 77 97 6.8E-7 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 SUPERFAMILY SSF111369 197 302 6.67E-12 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Gene3D G3DSA:1.10.287.470 136 217 4.5E-11 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Gene3D G3DSA:1.10.287.470 99 125 9.0E-13 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Gene3D G3DSA:2.40.30.170 265 382 2.6E-31 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 165 322 2.3E-13 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Gene3D G3DSA:2.40.50.100 65 98 9.0E-13 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 SUPERFAMILY SSF111369 63 124 1.57E-8 T 10-10-2018 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 Pfam PF00529 HlyD membrane-fusion protein of T1SS 43 379 1.0E-14 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_04395 16b76d7d6eee9f59e49b74f5434a829b 383 SUPERFAMILY SSF111369 144 201 2.48E-5 T 10-10-2018 AMQ28_11075 e119f908c096b261140c3be4abbdaddd 169 Gene3D G3DSA:3.50.100.10 68 157 2.4E-24 T 10-10-2018 AMQ28_11075 e119f908c096b261140c3be4abbdaddd 169 Pfam PF07566 Domain of Unknown Function (DUF1543) 16 65 1.4E-19 T 10-10-2018 IPR011440 Domain of unknown function DUF1543 AMQ28_11075 e119f908c096b261140c3be4abbdaddd 169 Gene3D G3DSA:3.10.20.10 1 67 1.6E-23 T 10-10-2018 AMQ28_08570 b9b562817d55208d17a49a746f7c3549 115 Gene3D G3DSA:3.40.30.10 1 115 8.2E-38 T 10-10-2018 AMQ28_08570 b9b562817d55208d17a49a746f7c3549 115 Pfam PF03960 ArsC family 5 113 8.2E-14 T 10-10-2018 IPR006660 Arsenate reductase-like AMQ28_08570 b9b562817d55208d17a49a746f7c3549 115 SUPERFAMILY SSF52833 1 114 7.91E-29 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08570 b9b562817d55208d17a49a746f7c3549 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 113 4.2E-25 T 10-10-2018 IPR006504 Transcriptional regulator Spx/MgsR AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 734 0.0 T 10-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 644 5.7E-47 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Gene3D G3DSA:1.10.1780.10 1 143 9.4E-39 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 3.1E-15 T 10-10-2018 IPR004176 Clp, N-terminal AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 308 4.9E-13 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 1.0E-37 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 1.0E-37 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 1.0E-37 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 1.0E-37 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Gene3D G3DSA:3.40.50.300 438 651 3.4E-78 T 10-10-2018 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Gene3D G3DSA:1.10.8.60 652 755 2.4E-28 T 10-10-2018 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 732 2.5E-23 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SMART SM01086 652 742 2.0E-26 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 10-10-2018 IPR028299 ClpA/B, conserved site 2 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SMART SM00382 206 352 5.4E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SMART SM00382 486 653 1.6E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Gene3D G3DSA:3.40.50.300 168 355 9.3E-64 T 10-10-2018 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SUPERFAMILY SSF52540 169 421 9.62E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 Gene3D G3DSA:1.10.8.60 356 437 4.6E-31 T 10-10-2018 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 302 314 - T 10-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SUPERFAMILY SSF81923 1 141 6.93E-49 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMQ28_14200 1dcbbc63354b515b2c61bc38bd3e57c3 758 SUPERFAMILY SSF52540 436 728 1.39E-73 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 Pfam PF10415 Fumarase C C-terminus 413 465 7.9E-12 T 10-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 Pfam PF00206 Lyase 19 346 6.6E-94 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 Gene3D G3DSA:1.10.40.30 413 462 9.3E-12 T 10-10-2018 AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 Gene3D G3DSA:1.10.275.10 5 143 2.1E-54 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 SUPERFAMILY SSF48557 7 465 5.34E-129 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 3.2E-28 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 3.2E-28 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 3.2E-28 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 3.2E-28 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02615 fe790cef9f3e51431c4f2f7c2ddace73 471 Gene3D G3DSA:1.20.200.10 144 411 1.6E-104 T 10-10-2018 AMQ28_11575 0185824825d541281069407f21be06f5 228 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMQ28_11575 0185824825d541281069407f21be06f5 228 SUPERFAMILY SSF51419 3 222 6.15E-73 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_11575 0185824825d541281069407f21be06f5 228 PIRSF PIRSF004848 1 228 1.2E-70 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMQ28_11575 0185824825d541281069407f21be06f5 228 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 224 6.7E-70 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMQ28_11575 0185824825d541281069407f21be06f5 228 Gene3D G3DSA:3.20.20.10 2 227 8.7E-77 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_11575 0185824825d541281069407f21be06f5 228 Pfam PF01168 Alanine racemase, N-terminal domain 28 224 2.3E-24 T 10-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_11575 0185824825d541281069407f21be06f5 228 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 223 30.106 T 10-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 Pfam PF00381 PTS HPr component phosphorylation site 4 82 3.3E-23 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 SUPERFAMILY SSF55594 1 87 3.79E-24 T 10-10-2018 IPR035895 HPr-like superfamily AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 1.3E-23 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.0E-12 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.0E-12 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.0E-12 T 10-10-2018 IPR000032 Phosphocarrier protein HPr-like AMQ28_05695 b1ad0c942ccbe5b60bd3831c20b0da7e 89 Gene3D G3DSA:3.30.1340.10 1 88 8.8E-26 T 10-10-2018 IPR035895 HPr-like superfamily AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 Gene3D G3DSA:1.10.540.10 11 117 5.9E-25 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 Gene3D G3DSA:1.20.140.10 220 393 2.7E-49 T 10-10-2018 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 234 368 1.8E-17 T 10-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 SUPERFAMILY SSF56645 15 217 2.49E-37 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 17 114 1.7E-9 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 SUPERFAMILY SSF47203 232 382 1.01E-19 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 PIRSF PIRSF016578 2 390 6.6E-29 T 10-10-2018 AMQ28_08740 166b9daef554ed98200545d9b1349d83 393 Gene3D G3DSA:2.40.110.10 118 216 1.0E-24 T 10-10-2018 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 SUPERFAMILY SSF117916 111 204 1.29E-20 T 10-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 198 9.0E-27 T 10-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 SUPERFAMILY SSF89360 14 110 7.06E-19 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 16 211 39.866 T 10-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 112 3.3E-6 T 10-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 Gene3D G3DSA:3.30.300.130 121 210 1.5E-19 T 10-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 Pfam PF01106 NifU-like domain 127 198 5.3E-19 T 10-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 18 211 9.7E-86 T 10-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AMQ28_03895 f88cca23efa92e0edd015ecdb76c713a 212 Gene3D G3DSA:2.60.300.12 17 113 1.9E-8 T 10-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMQ28_05105 c3c6ab4ede15b455c98ddae76eb7ca5e 554 SUPERFAMILY SSF56935 31 553 1.34E-57 T 10-10-2018 AMQ28_05105 c3c6ab4ede15b455c98ddae76eb7ca5e 554 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 35 553 1.3E-72 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMQ28_05105 c3c6ab4ede15b455c98ddae76eb7ca5e 554 Gene3D G3DSA:2.40.160.60 116 554 1.1E-58 T 10-10-2018 AMQ28_03835 6db59118793b540902be3244c03fb788 314 Pfam PF00561 alpha/beta hydrolase fold 40 165 1.3E-16 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03835 6db59118793b540902be3244c03fb788 314 Gene3D G3DSA:3.40.50.1820 20 307 5.6E-58 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03835 6db59118793b540902be3244c03fb788 314 SUPERFAMILY SSF53474 12 308 6.7E-59 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 Pfam PF03861 ANTAR domain 131 183 1.5E-13 T 10-10-2018 IPR005561 ANTAR domain GO:0003723 AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 PIRSF PIRSF036382 1 190 9.8E-45 T 10-10-2018 IPR008327 Signal transduction response regulator, antiterminator AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 Gene3D G3DSA:3.40.50.2300 1 129 2.2E-12 T 10-10-2018 AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 SUPERFAMILY SSF52172 1 183 6.26E-38 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 SMART SM01012 128 183 3.5E-16 T 10-10-2018 IPR005561 ANTAR domain GO:0003723 AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 Pfam PF00072 Response regulator receiver domain 6 112 7.9E-7 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_13545 7dd67340c0b628630a4b68181184d18a 195 Gene3D G3DSA:1.10.10.10 131 191 7.6E-14 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_05985 857981f6359fe084ef6d9c643487970e 326 Gene3D G3DSA:1.10.10.1880 188 254 2.4E-21 T 10-10-2018 AMQ28_05985 857981f6359fe084ef6d9c643487970e 326 Pfam PF01936 NYN domain 7 141 2.3E-30 T 10-10-2018 IPR021139 NYN domain, limkain-b1-type AMQ28_05985 857981f6359fe084ef6d9c643487970e 326 Pfam PF12872 OST-HTH/LOTUS domain 191 248 2.5E-10 T 10-10-2018 IPR025605 OST-HTH/LOTUS domain AMQ28_05985 857981f6359fe084ef6d9c643487970e 326 Gene3D G3DSA:3.40.50.1010 2 145 1.7E-12 T 10-10-2018 AMQ28_04715 06334461675822aecd4d001ee70536f8 393 Pfam PF04966 Carbohydrate-selective porin, OprB family 55 393 6.4E-85 T 10-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 AMQ28_04715 06334461675822aecd4d001ee70536f8 393 Gene3D G3DSA:2.40.160.180 10 393 2.5E-123 T 10-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 Gene3D G3DSA:2.30.210.20 1 59 2.0E-22 T 10-10-2018 AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 243 79.944 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 202 1.8E-63 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 SUPERFAMILY SSF55729 3 225 2.49E-81 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 Gene3D G3DSA:3.40.630.70 60 238 1.2E-57 T 10-10-2018 AMQ28_11460 f8152be3974873384a8c27049b0cad5c 243 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 30 215 1.4E-54 T 10-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 PRINTS PR00773 GrpE protein signature 161 180 2.6E-16 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 PRINTS PR00773 GrpE protein signature 136 151 2.6E-16 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 PRINTS PR00773 GrpE protein signature 85 100 2.6E-16 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 SUPERFAMILY SSF58014 34 129 2.88E-18 T 10-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 SUPERFAMILY SSF51064 135 181 2.48E-10 T 10-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 ProSitePatterns PS01071 grpE protein signature. 139 180 - T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 Pfam PF01025 GrpE 26 181 1.5E-35 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 Gene3D G3DSA:2.30.22.10 129 182 5.1E-13 T 10-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 Hamap MF_01151 Protein GrpE [grpE]. 4 182 16.133 T 10-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMQ28_07995 9b751c732b9df0776716d9a8d2dfcd18 182 Gene3D G3DSA:3.90.20.20 23 128 4.0E-17 T 10-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMQ28_08705 2150171af945e3708f6213f39084db2f 99 SMART SM00418 5 93 4.6E-10 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_08705 2150171af945e3708f6213f39084db2f 99 SUPERFAMILY SSF46785 2 98 2.8E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_08705 2150171af945e3708f6213f39084db2f 99 Pfam PF12840 Helix-turn-helix domain 4 74 6.3E-15 T 10-10-2018 AMQ28_08705 2150171af945e3708f6213f39084db2f 99 Gene3D G3DSA:1.10.10.10 1 99 1.3E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Gene3D G3DSA:1.10.287.1080 149 249 9.9E-27 T 10-10-2018 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Gene3D G3DSA:3.10.20.400 2 97 1.5E-38 T 10-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 150 243 19.746 T 10-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 SUPERFAMILY SSF141734 4 122 8.11E-49 T 10-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 55 109 2.0E-26 T 10-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 SUPERFAMILY SSF101386 152 247 1.83E-21 T 10-10-2018 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 32 106 6.1E-34 T 10-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 157 246 1.3E-11 T 10-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 248 34.335 T 10-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 6 110 31.909 T 10-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMQ28_06530 2acd10a8f59b246d7d32971078758144 260 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 153 243 2.5E-25 T 10-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 1.3E-252 T 10-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Gene3D G3DSA:1.10.1140.10 349 464 1.4E-57 T 10-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.9E-62 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 10-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 SUPERFAMILY SSF50615 1 73 1.86E-25 T 10-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 SUPERFAMILY SSF47917 349 463 4.19E-53 T 10-10-2018 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Gene3D G3DSA:2.40.10.170 1 73 1.3E-29 T 10-10-2018 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.698 T 10-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 SMART SM00382 140 331 2.8E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Gene3D G3DSA:3.40.50.300 74 348 1.8E-111 T 10-10-2018 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 70 2.0E-19 T 10-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07110 4a103d0cba225d6d4f2db17713035a88 464 SUPERFAMILY SSF52540 75 352 1.39E-90 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 SUPERFAMILY SSF56801 40 540 1.7E-120 T 10-10-2018 AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 Gene3D G3DSA:3.30.300.310 438 542 2.6E-26 T 10-10-2018 AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 Gene3D G3DSA:3.40.50.12780 19 437 3.7E-86 T 10-10-2018 AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 Pfam PF00501 AMP-binding enzyme 42 441 1.8E-68 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_01295 85ec8d307e8b60044ae9d89ec4ffb799 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 528 6.3E-21 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:1.10.274.100 495 645 8.7E-42 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:1.10.150.390 1312 1372 2.1E-27 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:1.10.40.90 379 421 2.1E-20 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:1.10.1790.20 1131 1310 7.5E-65 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 SUPERFAMILY SSF64484 21 1362 0.0 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:2.40.50.100 1147 1211 7.5E-65 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:2.40.50.100 1028 1122 3.0E-20 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:1.10.132.30 646 795 6.7E-67 T 10-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF04998 RNA polymerase Rpb1, domain 5 771 1312 2.9E-78 T 10-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF05000 RNA polymerase Rpb1, domain 4 679 768 1.6E-19 T 10-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF04983 RNA polymerase Rpb1, domain 3 494 649 1.0E-29 T 10-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 25 1362 0.0 T 10-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF04997 RNA polymerase Rpb1, domain 1 21 347 4.1E-89 T 10-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 18 1373 19.087 T 10-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Gene3D G3DSA:2.40.50.100 953 1027 8.6E-26 T 10-10-2018 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 SMART SM00663 240 519 3.4E-179 T 10-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 349 389 1.3E-7 T 10-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09430 140e180671004c8bb62d51dcf4852c10 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 490 5.3E-28 T 10-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 218 53.936 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 Gene3D G3DSA:3.40.50.620 2 220 1.3E-73 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 SUPERFAMILY SSF52402 4 222 5.29E-64 T 10-10-2018 AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 Pfam PF06508 Queuosine biosynthesis protein QueC 4 211 5.8E-77 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 205 1.4E-62 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMQ28_03035 0a0138d27ca13017bac78a422bac4969 223 PIRSF PIRSF006293 1 223 7.8E-78 T 10-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMQ28_09025 f8c7e6e2204016599f6cea07503006d5 196 Gene3D G3DSA:1.10.357.10 6 195 1.1E-41 T 10-10-2018 AMQ28_09025 f8c7e6e2204016599f6cea07503006d5 196 SUPERFAMILY SSF46689 10 79 1.28E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09025 f8c7e6e2204016599f6cea07503006d5 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 61 4.9E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_09025 f8c7e6e2204016599f6cea07503006d5 196 SUPERFAMILY SSF48498 83 193 2.05E-19 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 SUPERFAMILY SSF46785 11 71 4.39E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 Gene3D G3DSA:1.10.10.10 3 65 9.8E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 Gene3D G3DSA:3.30.70.920 66 148 6.4E-22 T 10-10-2018 AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 Pfam PF01037 Lrp/AsnC ligand binding domain 85 146 3.1E-16 T 10-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 SUPERFAMILY SSF54909 82 161 5.63E-15 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 SMART SM00344 12 121 4.2E-43 T 10-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 2.7E-18 T 10-10-2018 AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 1.3E-17 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 1.3E-17 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMQ28_03320 7e8f6d22582f665b89a85d12a2a31dce 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 1.3E-17 T 10-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMQ28_13585 5f91f2aa6471aee538c3857007a691a8 179 Gene3D G3DSA:3.90.1170.40 6 148 1.1E-42 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_13585 5f91f2aa6471aee538c3857007a691a8 179 SUPERFAMILY SSF54690 11 142 2.48E-40 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_13585 5f91f2aa6471aee538c3857007a691a8 179 Pfam PF02391 MoaE protein 15 122 1.0E-32 T 10-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_06330 99897e5bd8b8430e3f4211f342cc1e92 260 SUPERFAMILY SSF53335 11 215 2.79E-29 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_06330 99897e5bd8b8430e3f4211f342cc1e92 260 Pfam PF08241 Methyltransferase domain 49 137 2.6E-15 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMQ28_06330 99897e5bd8b8430e3f4211f342cc1e92 260 Gene3D G3DSA:3.40.50.150 11 253 1.4E-34 T 10-10-2018 AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 Gene3D G3DSA:3.40.710.10 75 349 7.1E-67 T 10-10-2018 AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 SUPERFAMILY SSF56601 95 343 3.57E-58 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 100 327 2.0E-59 T 10-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 132 143 1.3E-12 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 184 201 1.3E-12 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_06785 6b9d033e7bd3bd6ae48ce6a17748836d 350 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 211 224 1.3E-12 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 387 401 - T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 SUPERFAMILY SSF160246 7 147 5.23E-30 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 Gene3D G3DSA:3.30.300.160 68 148 1.2E-5 T 10-10-2018 AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 55 149 1.5E-13 T 10-10-2018 IPR007831 General secretory system II, protein E, N-terminal AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 SUPERFAMILY SSF52540 171 568 2.0E-100 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 Pfam PF00437 Type II/IV secretion system protein 193 459 9.4E-90 T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 13 569 6.1E-261 T 10-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 Gene3D G3DSA:3.40.50.300 295 570 2.6E-105 T 10-10-2018 AMQ28_06620 0104f5bd130e1fbfd46058e4b60c7c6f 570 Gene3D G3DSA:3.30.450.90 154 292 1.2E-48 T 10-10-2018 AMQ28_07180 2650c5b5c0c41c0019754147d2685763 384 Pfam PF00155 Aminotransferase class I and II 29 377 8.8E-64 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_07180 2650c5b5c0c41c0019754147d2685763 384 Gene3D G3DSA:3.40.640.10 42 279 6.3E-126 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_07180 2650c5b5c0c41c0019754147d2685763 384 Gene3D G3DSA:3.90.1150.10 14 377 6.3E-126 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_07180 2650c5b5c0c41c0019754147d2685763 384 SUPERFAMILY SSF53383 4 382 9.14E-97 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_11985 dda486e289e6d40f40bebd5aff6d1775 232 Gene3D G3DSA:2.50.20.10 35 232 5.4E-52 T 10-10-2018 AMQ28_11985 dda486e289e6d40f40bebd5aff6d1775 232 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 48 222 1.8E-39 T 10-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMQ28_11985 dda486e289e6d40f40bebd5aff6d1775 232 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 20 232 28.784 T 10-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AMQ28_11985 dda486e289e6d40f40bebd5aff6d1775 232 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 36 232 6.0E-24 T 10-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AMQ28_11985 dda486e289e6d40f40bebd5aff6d1775 232 SUPERFAMILY SSF89392 39 232 6.28E-46 T 10-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 Gene3D G3DSA:1.10.940.10 9 143 1.0E-32 T 10-10-2018 IPR035926 NusB-like superfamily AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 Pfam PF01029 NusB family 14 131 1.2E-19 T 10-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 19 433 2.9E-110 T 10-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 Gene3D G3DSA:3.40.50.150 144 433 3.4E-71 T 10-10-2018 AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 SUPERFAMILY SSF53335 144 434 1.47E-64 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 223 237 3.1E-26 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 252 262 3.1E-26 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 318 330 3.1E-26 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 416 433 3.1E-26 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 368 384 3.1E-26 T 10-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 430 3.3E-53 T 10-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMQ28_07920 58d9c55eba8cd18ad94e52bcf3aa4309 435 SUPERFAMILY SSF48013 13 150 1.31E-27 T 10-10-2018 IPR035926 NusB-like superfamily AMQ28_10445 e70a3907c019aa3e82ae83dfd059ece0 292 SUPERFAMILY SSF74653 186 285 4.32E-16 T 10-10-2018 AMQ28_10445 e70a3907c019aa3e82ae83dfd059ece0 292 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 205 282 4.6E-12 T 10-10-2018 IPR037682 TonB, C-terminal GO:0055085 AMQ28_10445 e70a3907c019aa3e82ae83dfd059ece0 292 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 207 284 3.6E-13 T 10-10-2018 IPR006260 TonB/TolA, C-terminal AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 Gene3D G3DSA:3.10.580.10 195 349 5.1E-33 T 10-10-2018 AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 SMART SM01091 349 429 3.0E-28 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 Gene3D G3DSA:3.30.465.10 350 429 5.3E-30 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 SUPERFAMILY SSF56176 347 432 1.85E-22 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 Pfam PF00571 CBS domain 286 331 3.3E-6 T 10-10-2018 IPR000644 CBS domain AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 SUPERFAMILY SSF54631 201 336 4.72E-22 T 10-10-2018 AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 Pfam PF01595 Domain of unknown function DUF21 8 199 1.8E-36 T 10-10-2018 IPR002550 CNNM, transmembrane domain AMQ28_03675 da886c5874f522df02aaf4219f00c2f1 443 Pfam PF03471 Transporter associated domain 350 427 6.1E-21 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Gene3D G3DSA:3.40.50.1000 596 865 6.3E-81 T 10-10-2018 IPR023214 HAD superfamily AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Pfam PF00702 haloacid dehalogenase-like hydrolase 611 828 2.2E-36 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Gene3D G3DSA:3.40.1110.10 626 746 6.3E-81 T 10-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 464 478 1.9E-24 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 761 771 1.9E-24 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 814 833 1.9E-24 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 629 1.9E-24 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 837 849 1.9E-24 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 617 623 - T 10-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 344 923 1.3E-179 T 10-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SUPERFAMILY SSF56784 613 921 1.17E-51 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Gene3D G3DSA:1.10.620.20 7 78 4.2E-9 T 10-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Gene3D G3DSA:1.10.620.20 155 223 3.3E-6 T 10-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Pfam PF00122 E1-E2 ATPase 415 595 2.9E-52 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SUPERFAMILY SSF81653 417 514 3.01E-25 T 10-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Pfam PF04945 YHS domain 22 64 2.2E-17 T 10-10-2018 IPR007029 YHS domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Pfam PF04945 YHS domain 94 137 2.4E-14 T 10-10-2018 IPR007029 YHS domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Pfam PF04945 YHS domain 176 218 2.3E-15 T 10-10-2018 IPR007029 YHS domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 324 924 2.0E-165 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SUPERFAMILY SSF47240 22 63 8.65E-7 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 386 893 8.1E-86 T 10-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SUPERFAMILY SSF81665 357 910 4.32E-16 T 10-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 Gene3D G3DSA:2.70.150.20 407 519 9.5E-35 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 384 403 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 537 551 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 791 808 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 848 862 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 404 422 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 PRINTS PR00943 Copper-transporting ATPase signature 598 613 1.2E-11 T 10-10-2018 AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SMART SM00746 23 60 2.9E-7 T 10-10-2018 IPR011017 TRASH domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SMART SM00746 177 214 4.0E-10 T 10-10-2018 IPR011017 TRASH domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SMART SM00746 96 133 1.4E-5 T 10-10-2018 IPR011017 TRASH domain AMQ28_12475 0f880aabfb1d35ab8c73d228298bfdbc 927 SUPERFAMILY SSF47240 176 217 1.65E-5 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 Pfam PF05194 UreE urease accessory protein, C-terminal domain 73 159 1.5E-25 T 10-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 PIRSF PIRSF036402 3 160 4.0E-36 T 10-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 Pfam PF02814 UreE urease accessory protein, N-terminal domain 17 64 5.3E-10 T 10-10-2018 IPR004029 UreE urease accessory, N-terminal AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 SUPERFAMILY SSF69737 72 139 3.79E-18 T 10-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 Gene3D G3DSA:3.30.70.790 73 144 9.6E-26 T 10-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 Gene3D G3DSA:2.60.260.20 1 71 9.0E-15 T 10-10-2018 AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 SMART SM00988 1 66 8.7E-11 T 10-10-2018 IPR004029 UreE urease accessory, N-terminal AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 SUPERFAMILY SSF69287 1 72 3.92E-13 T 10-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily AMQ28_07460 7c74b189ec5e226d7222ffa14c5694ab 160 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 21.191 T 10-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 SUPERFAMILY SSF56784 189 396 6.27E-52 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 178 396 1.4E-80 T 10-10-2018 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 193 363 6.6E-32 T 10-10-2018 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 Gene3D G3DSA:3.30.70.260 2 84 5.6E-9 T 10-10-2018 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 Gene3D G3DSA:3.40.50.1000 105 397 5.6E-84 T 10-10-2018 IPR023214 HAD superfamily AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 Pfam PF13740 ACT domain 3 79 2.5E-22 T 10-10-2018 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 SUPERFAMILY SSF55021 1 83 6.66E-10 T 10-10-2018 AMQ28_08425 c8579903b56c65142b51e8e7aebca2d8 406 Pfam PF12710 haloacid dehalogenase-like hydrolase 194 361 2.3E-22 T 10-10-2018 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 Gene3D G3DSA:1.10.10.250 73 141 5.1E-26 T 10-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 2.3E-31 T 10-10-2018 IPR020784 Ribosomal protein L11, N-terminal AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 SMART SM00649 9 141 6.2E-83 T 10-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 SUPERFAMILY SSF54747 3 73 4.97E-31 T 10-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 SUPERFAMILY SSF46906 68 141 1.44E-24 T 10-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 Gene3D G3DSA:3.30.1550.10 2 72 7.7E-36 T 10-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 3.0E-16 T 10-10-2018 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.915 T 10-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 7.9E-65 T 10-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 141 - T 10-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_09405 4c0217d5db9282698396133c1113bba8 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.1E-22 T 10-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMQ28_10265 fc8b712bfff2fc10a081f778b27173e2 116 SUPERFAMILY SSF53137 4 114 6.11E-50 T 10-10-2018 AMQ28_10265 fc8b712bfff2fc10a081f778b27173e2 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 7.1E-41 T 10-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10265 fc8b712bfff2fc10a081f778b27173e2 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 25.753 T 10-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10265 fc8b712bfff2fc10a081f778b27173e2 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 2.2E-39 T 10-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10265 fc8b712bfff2fc10a081f778b27173e2 116 Gene3D G3DSA:3.30.420.100 2 116 2.5E-40 T 10-10-2018 AMQ28_07730 408659c46f9c4431d7a5dcc079547445 378 Gene3D G3DSA:3.40.50.2000 188 363 2.4E-38 T 10-10-2018 AMQ28_07730 408659c46f9c4431d7a5dcc079547445 378 Pfam PF13477 Glycosyl transferase 4-like 9 157 1.8E-12 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMQ28_07730 408659c46f9c4431d7a5dcc079547445 378 Pfam PF00534 Glycosyl transferases group 1 198 354 7.7E-30 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_07730 408659c46f9c4431d7a5dcc079547445 378 SUPERFAMILY SSF53756 19 377 1.33E-64 T 10-10-2018 AMQ28_07730 408659c46f9c4431d7a5dcc079547445 378 Gene3D G3DSA:3.40.50.2000 16 187 2.6E-9 T 10-10-2018 AMQ28_14120 e63009b691328abacd3e5cb3a535305c 214 Gene3D G3DSA:1.10.10.690 61 214 3.1E-26 T 10-10-2018 IPR027405 YidB-like AMQ28_14120 e63009b691328abacd3e5cb3a535305c 214 SUPERFAMILY SSF140804 63 212 9.02E-26 T 10-10-2018 IPR027405 YidB-like AMQ28_14120 e63009b691328abacd3e5cb3a535305c 214 Pfam PF06078 Bacterial protein of unknown function (DUF937) 15 188 2.1E-14 T 10-10-2018 IPR009282 Protein of unknown function DUF937 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 10-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 SUPERFAMILY SSF75615 115 210 1.19E-25 T 10-10-2018 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 10-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Gene3D G3DSA:3.40.50.720 1 113 4.6E-28 T 10-10-2018 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 SUPERFAMILY SSF53790 212 456 5.63E-83 T 10-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Gene3D G3DSA:3.30.950.10 332 457 1.4E-47 T 10-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 4.3E-97 T 10-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 1.5E-51 T 10-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Gene3D G3DSA:3.30.160.110 114 149 4.0E-15 T 10-10-2018 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Gene3D G3DSA:3.40.1010.10 215 331 6.8E-47 T 10-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Hamap MF_01646 Siroheme synthase [cysG]. 1 458 49.867 T 10-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Pfam PF10414 Sirohaem synthase dimerisation region 152 208 1.1E-16 T 10-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Gene3D G3DSA:1.10.8.210 150 211 2.2E-8 T 10-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 Pfam PF13241 Putative NAD(P)-binding 7 116 1.2E-24 T 10-10-2018 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 208 1.7E-59 T 10-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 SUPERFAMILY SSF51735 2 113 3.26E-18 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_12000 6268b1f17f482e6643383c9d1d1f32a1 458 PIRSF PIRSF036426 1 458 4.8E-198 T 10-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 SUPERFAMILY SSF55681 10 481 1.79E-104 T 10-10-2018 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 SUPERFAMILY SSF55826 218 393 1.44E-21 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 462 2.1E-46 T 10-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Gene3D G3DSA:3.30.930.10 11 468 6.1E-233 T 10-10-2018 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 40.858 T 10-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 570 8.8E-247 T 10-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 9.4E-18 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 9.4E-18 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 9.4E-18 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 9.4E-18 T 10-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Gene3D G3DSA:3.40.50.800 4 557 6.1E-233 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 PIRSF PIRSF001535 1 571 5.2E-261 T 10-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Pfam PF04073 Aminoacyl-tRNA editing domain 256 379 1.1E-18 T 10-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Pfam PF03129 Anticodon binding domain 478 570 1.4E-18 T 10-10-2018 IPR004154 Anticodon-binding AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 Gene3D G3DSA:3.90.960.10 240 392 6.1E-233 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_04190 1e9f54ea3109079de041b166fb4acd75 571 SUPERFAMILY SSF52954 466 570 1.64E-29 T 10-10-2018 AMQ28_12940 9a65f7e936aa4e6990b5c711144044db 232 Pfam PF00929 Exonuclease 4 161 2.3E-4 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12940 9a65f7e936aa4e6990b5c711144044db 232 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 187 212 7.6E-5 T 10-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AMQ28_12940 9a65f7e936aa4e6990b5c711144044db 232 SMART SM00479 2 170 6.3E-4 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12940 9a65f7e936aa4e6990b5c711144044db 232 Gene3D G3DSA:3.30.420.10 3 214 6.3E-20 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_12940 9a65f7e936aa4e6990b5c711144044db 232 SUPERFAMILY SSF53098 3 192 2.94E-21 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08260 2ee7fd0cb1487eb8328eefa5c47f8ab2 188 Gene3D G3DSA:3.40.50.1580 2 186 5.1E-34 T 10-10-2018 AMQ28_08260 2ee7fd0cb1487eb8328eefa5c47f8ab2 188 Pfam PF01048 Phosphorylase superfamily 27 176 3.2E-12 T 10-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMQ28_08260 2ee7fd0cb1487eb8328eefa5c47f8ab2 188 SUPERFAMILY SSF53167 4 182 1.31E-31 T 10-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMQ28_00180 7e12a5ab350cbcc7d28807be27dba0fd 261 Pfam PF13333 Integrase core domain 203 258 2.0E-25 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_00180 7e12a5ab350cbcc7d28807be27dba0fd 261 SUPERFAMILY SSF53098 93 252 2.12E-33 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00180 7e12a5ab350cbcc7d28807be27dba0fd 261 Gene3D G3DSA:3.30.420.10 94 254 2.4E-10 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00180 7e12a5ab350cbcc7d28807be27dba0fd 261 Pfam PF13276 HTH-like domain 21 72 2.3E-17 T 10-10-2018 IPR025948 HTH-like domain AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 Pfam PF00085 Thioredoxin 5 106 2.7E-33 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 Gene3D G3DSA:3.40.30.10 1 108 4.4E-33 T 10-10-2018 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-7 T 10-10-2018 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-7 T 10-10-2018 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-7 T 10-10-2018 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 PIRSF PIRSF000077 2 108 1.2E-38 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 SUPERFAMILY SSF52833 3 107 1.05E-35 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_05265 cc42a50b2563c5e18be9738ebba77edf 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 1.4E-35 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 SUPERFAMILY SSF81464 14 115 6.54E-23 T 10-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 10 236 3.4E-96 T 10-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 PIRSF PIRSF000292 1 349 1.5E-124 T 10-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 Gene3D G3DSA:2.60.40.420 111 265 3.8E-45 T 10-10-2018 IPR008972 Cupredoxin AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 144 222 3.6E-5 T 10-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 SUPERFAMILY SSF49503 117 318 2.43E-42 T 10-10-2018 IPR008972 Cupredoxin AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 Gene3D G3DSA:1.10.287.90 26 110 5.7E-30 T 10-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMQ28_01380 59704f2ea50349fbfc90822331b42adb 351 Pfam PF06481 COX Aromatic Rich Motif 294 320 5.5E-10 T 10-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AMQ28_10940 0fb800f7cf197202bedc0e9126071abb 183 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 179 1.7E-74 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMQ28_10940 0fb800f7cf197202bedc0e9126071abb 183 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 6.0E-94 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMQ28_10940 0fb800f7cf197202bedc0e9126071abb 183 Gene3D G3DSA:2.60.120.10 1 183 7.4E-76 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_10940 0fb800f7cf197202bedc0e9126071abb 183 SUPERFAMILY SSF51182 1 182 5.7E-76 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_10940 0fb800f7cf197202bedc0e9126071abb 183 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 181 2.4E-75 T 10-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMQ28_06020 3dd4c06b9e0f3f6551bf0c1c945cbd1b 368 Gene3D G3DSA:3.40.50.2000 1 171 3.7E-23 T 10-10-2018 AMQ28_06020 3dd4c06b9e0f3f6551bf0c1c945cbd1b 368 SUPERFAMILY SSF53756 6 367 1.49E-65 T 10-10-2018 AMQ28_06020 3dd4c06b9e0f3f6551bf0c1c945cbd1b 368 Gene3D G3DSA:3.40.50.2000 183 350 2.5E-30 T 10-10-2018 AMQ28_06020 3dd4c06b9e0f3f6551bf0c1c945cbd1b 368 Pfam PF00534 Glycosyl transferases group 1 184 337 1.2E-27 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_06020 3dd4c06b9e0f3f6551bf0c1c945cbd1b 368 Pfam PF13439 Glycosyltransferase Family 4 13 166 2.3E-25 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMQ28_09985 a3438402a6fd98ec443e216fcaa822c4 213 SUPERFAMILY SSF53335 7 203 8.36E-31 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_09985 a3438402a6fd98ec443e216fcaa822c4 213 Gene3D G3DSA:3.40.50.150 29 211 2.4E-27 T 10-10-2018 AMQ28_09985 a3438402a6fd98ec443e216fcaa822c4 213 Pfam PF08241 Methyltransferase domain 40 133 5.3E-20 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 Gene3D G3DSA:3.40.50.10800 125 348 4.9E-96 T 10-10-2018 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 41 350 4.3E-112 T 10-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 SUPERFAMILY SSF142754 39 349 3.27E-108 T 10-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 355 67.046 T 10-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 Pfam PF02445 Quinolinate synthetase A protein 42 348 3.7E-104 T 10-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 Gene3D G3DSA:3.40.50.10800 42 330 4.9E-96 T 10-10-2018 AMQ28_11145 31c75707e083b4fe600674c5a3332dfb 355 Gene3D G3DSA:3.40.50.10800 210 305 4.9E-96 T 10-10-2018 AMQ28_01760 2bdfde3559f6f96f4d96ee6ecdd06208 229 Gene3D G3DSA:3.90.550.10 1 225 5.3E-55 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_01760 2bdfde3559f6f96f4d96ee6ecdd06208 229 Pfam PF00483 Nucleotidyl transferase 2 136 1.2E-20 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMQ28_01760 2bdfde3559f6f96f4d96ee6ecdd06208 229 SUPERFAMILY SSF53448 1 223 1.58E-52 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 10-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.2E-7 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.2E-7 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.2E-7 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 Pfam PF00137 ATP synthase subunit C 10 72 8.8E-9 T 10-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 Gene3D G3DSA:1.20.20.10 1 77 3.0E-27 T 10-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.2E-28 T 10-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.695 T 10-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07135 94b12579d392b38dd17e2e4359e55ecc 81 SUPERFAMILY SSF81333 2 78 4.05E-18 T 10-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 Gene3D G3DSA:1.20.81.30 261 371 1.8E-26 T 10-10-2018 AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 2.7E-18 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 389 408 2.7E-18 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 373 387 2.7E-18 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 2.7E-18 T 10-10-2018 IPR003004 GspF/PilC family AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 Gene3D G3DSA:1.20.81.30 61 176 7.8E-31 T 10-10-2018 AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 169 197 - T 10-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 197 2.3E-31 T 10-10-2018 IPR018076 Type II secretion system F domain AMQ28_06625 4cd2a061ded586ab766b558f275097e1 408 Pfam PF00482 Type II secretion system (T2SS), protein F 279 400 1.4E-28 T 10-10-2018 IPR018076 Type II secretion system F domain AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 4.5E-36 T 10-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 5.6E-46 T 10-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 10-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 SUPERFAMILY SSF54843 1 107 3.27E-41 T 10-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 Gene3D G3DSA:3.90.470.10 1 109 5.3E-45 T 10-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10210 b9d12cea54e29948b4c9462a26fae21b 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 25.537 T 10-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 SUPERFAMILY SSF53732 7 476 1.7E-160 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 8 477 4.9E-231 T 10-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 ProSitePatterns PS01244 Aconitase family signature 2. 411 424 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 ProSitePatterns PS00450 Aconitase family signature 1. 350 366 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 Pfam PF00330 Aconitase family (aconitate hydratase) 13 469 9.2E-158 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 7 477 58.736 T 10-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 Gene3D G3DSA:3.30.499.10 338 477 4.8E-49 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 Gene3D G3DSA:3.30.499.20 10 297 5.1E-94 T 10-10-2018 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 354 365 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 411 424 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 93 106 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 119 127 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 130 143 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 297 311 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 206 219 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 144 159 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_06090 c6a0161587a9c1146c846a8ace53bf95 477 PRINTS PR00415 Aconitase family signature 220 233 2.2E-45 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 SUPERFAMILY SSF142984 254 337 8.24E-21 T 10-10-2018 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 355 366 - T 10-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 59 230 9.5E-50 T 10-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 SMART SM00928 342 387 4.3E-21 T 10-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 178 193 - T 10-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 SUPERFAMILY SSF142019 21 245 6.41E-85 T 10-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Pfam PF10531 SLBB domain 259 303 2.0E-6 T 10-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 19 429 3.7E-178 T 10-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Gene3D G3DSA:3.40.50.11540 64 241 1.3E-78 T 10-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 344 427 2.2E-24 T 10-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Gene3D G3DSA:3.10.20.600 245 339 2.1E-28 T 10-10-2018 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 SUPERFAMILY SSF140490 339 432 2.48E-30 T 10-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04545 30daa93f1c99168bcdc840b1c47443ee 443 Gene3D G3DSA:1.20.1440.230 340 440 1.1E-25 T 10-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 353 2.0E-156 T 10-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 10-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 354 4.1E-137 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 Gene3D G3DSA:3.40.718.10 2 359 5.6E-146 T 10-10-2018 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 SUPERFAMILY SSF53659 1 358 2.16E-121 T 10-10-2018 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 SMART SM01329 4 354 1.2E-199 T 10-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMQ28_06075 064cda19c97e18768d5202f807adfedb 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 358 51.487 T 10-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMQ28_05055 70d270e12e9de79a26822941effd0b2f 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 275 5.1E-121 T 10-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AMQ28_05055 70d270e12e9de79a26822941effd0b2f 278 SUPERFAMILY SSF53474 1 272 2.46E-79 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_05055 70d270e12e9de79a26822941effd0b2f 278 Pfam PF00756 Putative esterase 21 270 1.8E-56 T 10-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMQ28_05055 70d270e12e9de79a26822941effd0b2f 278 Gene3D G3DSA:3.40.50.1820 1 278 3.1E-86 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 350 5.0E-134 T 10-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 Gene3D G3DSA:3.20.20.210 1 356 2.2E-161 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 351 1.7E-137 T 10-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 SUPERFAMILY SSF51726 1 355 3.01E-118 T 10-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMQ28_12710 3e8298a93bb7a55d81f46e42c2d15054 356 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 352 48.729 T 10-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMQ28_11705 19a0bf5f4b8df4513f2cccae6ebe0823 285 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 6 274 2.6E-47 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMQ28_11705 19a0bf5f4b8df4513f2cccae6ebe0823 285 Pfam PF04085 rod shape-determining protein MreC 125 271 7.2E-37 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMQ28_11705 19a0bf5f4b8df4513f2cccae6ebe0823 285 PIRSF PIRSF038471 4 285 1.2E-63 T 10-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMQ28_11705 19a0bf5f4b8df4513f2cccae6ebe0823 285 Gene3D G3DSA:2.40.10.350 182 259 1.3E-35 T 10-10-2018 AMQ28_11705 19a0bf5f4b8df4513f2cccae6ebe0823 285 Gene3D G3DSA:2.40.10.340 123 270 1.3E-35 T 10-10-2018 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 PRINTS PR00147 DNA photolyase signature 388 402 6.1E-21 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 PRINTS PR00147 DNA photolyase signature 329 345 6.1E-21 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 PRINTS PR00147 DNA photolyase signature 349 367 6.1E-21 T 10-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 SUPERFAMILY SSF48173 202 471 1.44E-103 T 10-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 Gene3D G3DSA:3.40.50.620 3 206 2.1E-70 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 Pfam PF03441 FAD binding domain of DNA photolyase 279 471 2.4E-80 T 10-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 SUPERFAMILY SSF52425 1 176 1.27E-41 T 10-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 Gene3D G3DSA:1.25.40.80 132 290 2.1E-70 T 10-10-2018 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 Gene3D G3DSA:1.10.579.10 297 473 4.3E-76 T 10-10-2018 AMQ28_02450 352b0f8c163a95f9066810bf9e932075 473 Pfam PF00875 DNA photolyase 3 166 9.5E-38 T 10-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Pfam PF13180 PDZ domain 260 350 3.2E-18 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Pfam PF13180 PDZ domain 370 453 3.9E-11 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Pfam PF13365 Trypsin-like peptidase domain 87 220 2.5E-32 T 10-10-2018 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 SMART SM00228 370 450 2.7E-10 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 SMART SM00228 259 341 1.7E-13 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 SUPERFAMILY SSF50156 369 456 7.49E-14 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 29 455 2.7E-137 T 10-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Gene3D G3DSA:2.40.10.120 28 252 8.1E-75 T 10-10-2018 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 SUPERFAMILY SSF50156 240 349 1.73E-23 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 SUPERFAMILY SSF50494 11 268 2.45E-61 T 10-10-2018 IPR009003 Peptidase S1, PA clan AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Gene3D G3DSA:2.30.42.10 367 460 3.3E-15 T 10-10-2018 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 Gene3D G3DSA:2.30.42.10 254 356 4.3E-29 T 10-10-2018 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 117 137 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 96 108 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 157 181 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 213 230 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 299 311 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02960 ec09d286635cc190f69aabfd481834bb 460 PRINTS PR00834 HtrA/DegQ protease family signature 191 208 1.0E-46 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 Gene3D G3DSA:1.10.3860.10 1 433 1.6E-124 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 310 333 - T 10-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 3 445 37.48 T 10-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 Pfam PF00375 Sodium:dicarboxylate symporter family 10 416 2.8E-112 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 307 333 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 207 226 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 342 361 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 89 114 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 160 182 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 4.4E-28 T 10-10-2018 AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 51 66 - T 10-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMQ28_02495 f68fb99a852f1bbd7d4eb0ced4671bd2 448 SUPERFAMILY SSF118215 10 416 1.15E-120 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_13060 9367599df8a2ceaa0f02e0a0014d9cea 71 Pfam PF13619 KTSC domain 7 60 8.7E-5 T 10-10-2018 IPR025309 KTSC domain AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 Pfam PF00576 HIUase/Transthyretin family 23 131 7.8E-36 T 10-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 Gene3D G3DSA:2.60.40.180 14 131 5.8E-39 T 10-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 21 131 7.4E-41 T 10-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 ProSitePatterns PS00769 Transthyretin signature 2. 115 127 - T 10-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 PRINTS PR00189 Transthyretin signature 54 79 5.7E-12 T 10-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 PRINTS PR00189 Transthyretin signature 22 42 5.7E-12 T 10-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 PRINTS PR00189 Transthyretin signature 110 132 5.7E-12 T 10-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 SUPERFAMILY SSF49472 17 132 1.03E-37 T 10-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_00910 0d7e52c13e5f14eb17dc6f8d6e9f9cf3 132 SMART SM00095 18 132 0.0017 T 10-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 424 511 8.7E-23 T 10-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 327 416 1.5E-22 T 10-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 511 1.9E-214 T 10-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Gene3D G3DSA:3.40.50.1100 14 325 3.5E-126 T 10-10-2018 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 314 1.3E-72 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 SUPERFAMILY SSF55021 417 511 7.55E-24 T 10-10-2018 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Gene3D G3DSA:3.40.50.1100 50 146 3.5E-126 T 10-10-2018 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 Gene3D G3DSA:3.40.1020.10 336 512 3.2E-62 T 10-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMQ28_14170 b76762744aa9f30e7f7e5d6607a46eee 512 SUPERFAMILY SSF53686 6 363 5.24E-93 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 SUPERFAMILY SSF69765 4 159 1.57E-63 T 10-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 Gene3D G3DSA:3.30.1330.50 2 163 2.8E-66 T 10-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 10-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 34.736 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 Pfam PF02542 YgbB family 5 158 1.4E-64 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_00245 f2c3068464675b7162eb1498673ec5d6 163 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 2.5E-65 T 10-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 98 113 - T 10-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 Pfam PF01209 ubiE/COQ5 methyltransferase family 83 312 6.1E-99 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 220 234 - T 10-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 87 312 4.7E-83 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 SUPERFAMILY SSF53335 82 310 2.63E-48 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 Gene3D G3DSA:3.40.50.150 93 313 4.0E-74 T 10-10-2018 AMQ28_06510 5b18ea14b84f409b090e5b4f8c198e02 313 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 78 312 38.489 T 10-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 SMART SM00072 2 184 1.2E-59 T 10-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 Gene3D G3DSA:3.30.63.10 34 93 1.3E-62 T 10-10-2018 AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 Pfam PF00625 Guanylate kinase 6 180 8.9E-49 T 10-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 34.74 T 10-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 SUPERFAMILY SSF52540 2 183 5.64E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.2E-71 T 10-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMQ28_09835 67b818d0b2d41fba3fba5cada426a45d 207 Gene3D G3DSA:3.40.50.300 7 180 1.3E-62 T 10-10-2018 AMQ28_11825 61961b931f0e28390f9e9c0af2bc491e 418 SUPERFAMILY SSF103473 5 407 1.31E-24 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11825 61961b931f0e28390f9e9c0af2bc491e 418 Pfam PF13000 Acetyl-coenzyme A transporter 1 5 154 9.7E-24 T 10-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 AMQ28_11825 61961b931f0e28390f9e9c0af2bc491e 418 Gene3D G3DSA:1.20.1250.20 2 405 6.2E-16 T 10-10-2018 AMQ28_04115 a451ecb10a0e5a470981880e2b4abc25 171 Gene3D G3DSA:2.40.440.10 3 171 3.5E-23 T 10-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMQ28_04115 a451ecb10a0e5a470981880e2b4abc25 171 SUPERFAMILY SSF141523 7 160 1.31E-21 T 10-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMQ28_04115 a451ecb10a0e5a470981880e2b4abc25 171 Pfam PF03734 L,D-transpeptidase catalytic domain 10 160 1.6E-15 T 10-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 SMART SM00267 154 311 3.0E-32 T 10-10-2018 IPR000160 GGDEF domain AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 Pfam PF00990 Diguanylate cyclase, GGDEF domain 166 310 1.8E-30 T 10-10-2018 IPR000160 GGDEF domain AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 Gene3D G3DSA:3.30.450.40 6 154 6.7E-8 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 SUPERFAMILY SSF55073 170 308 6.98E-35 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 SUPERFAMILY SSF55781 11 151 7.2E-15 T 10-10-2018 AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 161 310 8.5E-36 T 10-10-2018 IPR000160 GGDEF domain AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 Gene3D G3DSA:3.30.70.270 155 314 1.2E-39 T 10-10-2018 AMQ28_06440 603e2c294b3bdef5eb81ce4190e01d7f 314 SMART SM00065 8 151 0.0057 T 10-10-2018 IPR003018 GAF domain GO:0005515 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 1.0E-214 T 10-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 2.4E-69 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 Gene3D G3DSA:3.30.390.30 338 450 5.6E-47 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PIRSF PIRSF000350 1 447 2.6E-85 T 10-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 318 8.0E-66 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 SUPERFAMILY SSF51905 1 359 4.86E-52 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 SUPERFAMILY SSF55424 336 450 8.25E-35 T 10-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 1.7E-33 T 10-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 Gene3D G3DSA:3.50.50.60 144 261 3.1E-120 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 10-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 5.8E-28 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 5.8E-28 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 5.8E-28 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 5.8E-28 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.8E-28 T 10-10-2018 AMQ28_07585 d5dd8fccc2b93692331105a02d394113 450 Gene3D G3DSA:3.50.50.60 5 318 3.1E-120 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 SUPERFAMILY SSF55282 3 178 1.2E-77 T 10-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 Pfam PF00281 Ribosomal protein L5 24 80 1.2E-27 T 10-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 PIRSF PIRSF002161 1 178 4.9E-67 T 10-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 178 42.197 T 10-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 Gene3D G3DSA:3.30.1440.10 1 178 5.0E-79 T 10-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 10-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10245 4a7a9799689d3ff69178aeae327fcb88 178 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.4E-43 T 10-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 Gene3D G3DSA:3.40.30.10 119 270 2.5E-38 T 10-10-2018 AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 SUPERFAMILY SSF52833 131 269 3.28E-32 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 SUPERFAMILY SSF54423 63 117 8.04E-8 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 Pfam PF10411 Disulfide bond isomerase protein N-terminus 62 113 2.8E-11 T 10-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 Gene3D G3DSA:3.10.450.70 58 118 9.0E-7 T 10-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 AMQ28_06770 213378233cd43efdf1f06e738114bc10 270 Pfam PF13098 Thioredoxin-like domain 147 267 2.8E-25 T 10-10-2018 IPR012336 Thioredoxin-like fold AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 SUPERFAMILY SSF90123 140 458 3.53E-59 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 Gene3D G3DSA:1.20.1560.10 145 456 5.8E-62 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 SMART SM00382 500 686 3.0E-15 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 Gene3D G3DSA:3.40.50.300 466 710 1.3E-67 T 10-10-2018 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 Pfam PF00664 ABC transporter transmembrane region 161 426 5.5E-31 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 Gene3D G3DSA:3.90.70.10 5 126 3.2E-11 T 10-10-2018 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 Pfam PF00005 ABC transporter 495 640 2.2E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 ProSitePatterns PS00211 ABC transporters family signature. 612 626 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 9 701 2.1E-255 T 10-10-2018 IPR017750 ATPase, type I secretion system AMQ28_13675 d99142a2589b5ef4ebc9b68880d8aa69 712 SUPERFAMILY SSF52540 464 700 2.77E-60 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 PIRSF PIRSF005215 1 288 2.0E-115 T 10-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 Gene3D G3DSA:3.40.50.150 107 287 3.0E-37 T 10-10-2018 AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 Pfam PF09313 Domain of unknown function (DUF1971) 8 88 2.8E-31 T 10-10-2018 IPR015392 Domain of unknown function DUF1971 AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 SUPERFAMILY SSF51197 1 101 2.2E-37 T 10-10-2018 AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 Gene3D G3DSA:2.60.120.10 1 106 4.7E-42 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 SUPERFAMILY SSF53335 67 275 4.22E-27 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 Pfam PF03848 Tellurite resistance protein TehB 90 283 4.3E-74 T 10-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain AMQ28_09230 0e7c2f944e94c3557b956e777e4b000d 291 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 48 285 1.3E-85 T 10-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SMART SM00387 423 535 4.2E-33 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SUPERFAMILY SSF158472 264 312 1.57E-6 T 10-10-2018 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 Gene3D G3DSA:1.10.287.130 265 380 6.6E-23 T 10-10-2018 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 Pfam PF00512 His Kinase A (phospho-acceptor) domain 315 379 7.8E-10 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 534 1.8E-21 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 Pfam PF00672 HAMP domain 265 308 7.6E-7 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SMART SM00304 261 313 5.8E-9 T 10-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SMART SM00388 314 379 7.0E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 532 4.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 512 4.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 473 4.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 487 4.7E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SUPERFAMILY SSF55874 368 535 4.06E-35 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 Gene3D G3DSA:3.30.565.10 386 543 1.8E-32 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_04580 9a1d022251593a5cc61e3900ade13682 551 SUPERFAMILY SSF47384 297 379 1.16E-15 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 SMART SM00155 184 211 7.7E-4 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 SMART SM00155 434 461 3.9E-5 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 SUPERFAMILY SSF56024 305 503 6.08E-28 T 10-10-2018 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 Pfam PF13091 PLD-like domain 94 243 6.9E-17 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 Pfam PF13091 PLD-like domain 332 486 6.7E-22 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 SUPERFAMILY SSF56024 42 256 1.15E-39 T 10-10-2018 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 Gene3D G3DSA:3.30.870.10 299 512 2.1E-38 T 10-10-2018 AMQ28_11285 c78e499eaedec793a2be5d7430d6bac2 544 Gene3D G3DSA:3.30.870.10 83 280 4.0E-33 T 10-10-2018 AMQ28_05090 9015ee3bb9946faad1cad85a0286dbbb 185 SUPERFAMILY SSF55811 5 166 2.84E-35 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_05090 9015ee3bb9946faad1cad85a0286dbbb 185 Gene3D G3DSA:2.20.70.10 3 38 1.1E-11 T 10-10-2018 AMQ28_05090 9015ee3bb9946faad1cad85a0286dbbb 185 Pfam PF14803 Nudix N-terminal 5 37 4.6E-12 T 10-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 AMQ28_05090 9015ee3bb9946faad1cad85a0286dbbb 185 Pfam PF00293 NUDIX domain 46 144 1.7E-9 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_05090 9015ee3bb9946faad1cad85a0286dbbb 185 Gene3D G3DSA:3.90.79.10 39 184 1.7E-38 T 10-10-2018 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.4E-20 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 Gene3D G3DSA:1.20.140.10 244 398 2.7E-32 T 10-10-2018 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 SUPERFAMILY SSF47203 241 395 3.7E-33 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 Gene3D G3DSA:1.10.540.10 1 128 6.3E-5 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 Gene3D G3DSA:2.40.110.10 130 238 2.3E-34 T 10-10-2018 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 392 1.8E-38 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_00205 8c0d7dc2035ae62842665b20021c16d1 401 SUPERFAMILY SSF56645 61 254 8.9E-44 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.2E-22 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.2E-22 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.2E-22 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 Gene3D G3DSA:3.30.860.10 1 91 8.8E-39 T 10-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 10-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 SUPERFAMILY SSF54570 3 84 9.55E-34 T 10-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 4.6E-43 T 10-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 Pfam PF00203 Ribosomal protein S19 3 83 1.1E-34 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 PIRSF PIRSF002144 1 91 5.7E-31 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10205 5cdb93806056dc339adcf64e9aa7920e 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.564 T 10-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_06720 64eb19d46860d8837c9a3280f2be297e 206 SUPERFAMILY SSF55811 16 199 8.53E-38 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_06720 64eb19d46860d8837c9a3280f2be297e 206 ProSitePatterns PS00893 Nudix box signature. 96 117 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_06720 64eb19d46860d8837c9a3280f2be297e 206 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 13 197 1.2E-42 T 10-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AMQ28_06720 64eb19d46860d8837c9a3280f2be297e 206 Pfam PF00293 NUDIX domain 57 180 8.5E-11 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_06720 64eb19d46860d8837c9a3280f2be297e 206 Gene3D G3DSA:3.90.79.10 3 205 8.0E-50 T 10-10-2018 AMQ28_10775 03af7a5d9c2d292aab8dd2de0d5922fd 396 Gene3D G3DSA:1.20.1250.20 7 386 6.5E-37 T 10-10-2018 AMQ28_10775 03af7a5d9c2d292aab8dd2de0d5922fd 396 SUPERFAMILY SSF103473 6 390 3.66E-46 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_10775 03af7a5d9c2d292aab8dd2de0d5922fd 396 Pfam PF07690 Major Facilitator Superfamily 21 352 1.0E-26 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00015 f00b505cbf6aa8e54b006d08a6367eee 528 PIRSF PIRSF006446 354 527 2.6E-31 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMQ28_00015 f00b505cbf6aa8e54b006d08a6367eee 528 PIRSF PIRSF006446 2 327 7.0E-118 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMQ28_00015 f00b505cbf6aa8e54b006d08a6367eee 528 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 1.3E-175 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMQ28_04925 a4dda41bccdd0aeabe2ecee34ff9560b 68 SUPERFAMILY SSF47413 2 67 7.04E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_04925 a4dda41bccdd0aeabe2ecee34ff9560b 68 Gene3D G3DSA:1.10.260.40 1 68 2.4E-19 T 10-10-2018 AMQ28_04925 a4dda41bccdd0aeabe2ecee34ff9560b 68 Pfam PF01381 Helix-turn-helix 12 65 7.1E-14 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_04925 a4dda41bccdd0aeabe2ecee34ff9560b 68 SMART SM00530 11 66 6.9E-12 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 10-10-2018 IPR020610 Thiolase, active site GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 10-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 Pfam PF02803 Thiolase, C-terminal domain 278 399 4.3E-47 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 PIRSF PIRSF000429 1 401 4.3E-112 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 SUPERFAMILY SSF53901 279 400 1.73E-44 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 Pfam PF00108 Thiolase, N-terminal domain 5 270 6.5E-50 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 SUPERFAMILY SSF53901 3 278 2.06E-63 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 10-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 Gene3D G3DSA:3.40.47.10 6 298 5.4E-145 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.4E-135 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_04730 312f7fa9f0ba4a8f79a5b12ad540f136 401 Gene3D G3DSA:3.40.47.10 125 396 5.4E-145 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01625 5dcd5903053b14de9a15a7d564e24b4e 302 Pfam PF03956 Lysine exporter LysO 117 299 3.2E-47 T 10-10-2018 IPR005642 Lysine exporter LysO AMQ28_01625 5dcd5903053b14de9a15a7d564e24b4e 302 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 138 285 6.0E-44 T 10-10-2018 IPR005642 Lysine exporter LysO AMQ28_06880 9267a75e250f1ebf5181456aad2d43a0 75 Pfam PF04380 Membrane fusogenic activity 4 68 2.9E-14 T 10-10-2018 IPR007475 Membrane fusogenic activity AMQ28_08890 f5eaa863eeaf91cb624ac4010b2bdc7b 657 SUPERFAMILY SSF56349 109 353 9.42E-5 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_08890 f5eaa863eeaf91cb624ac4010b2bdc7b 657 SUPERFAMILY SSF56349 225 510 3.83E-11 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Gene3D G3DSA:1.10.260.30 310 447 8.5E-38 T 10-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Gene3D G3DSA:3.40.50.300 90 285 6.4E-121 T 10-10-2018 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 431 3.2E-174 T 10-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 8.6E-73 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 SMART SM00962 100 296 1.6E-110 T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 10-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 SUPERFAMILY SSF52540 42 351 8.35E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 SUPERFAMILY SSF47446 298 432 3.14E-43 T 10-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 SMART SM00382 99 247 4.6E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Pfam PF02978 Signal peptide binding domain 329 429 2.5E-30 T 10-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.0E-21 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 442 33.674 T 10-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 Gene3D G3DSA:1.20.120.140 5 305 6.4E-121 T 10-10-2018 AMQ28_04980 7ccfe2211c3e6a78f9027c737f76c8a6 469 SMART SM00963 1 86 3.5E-35 T 10-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 Gene3D G3DSA:3.30.300.30 452 558 2.9E-29 T 10-10-2018 AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 208 219 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 Gene3D G3DSA:3.40.50.12780 9 448 1.2E-121 T 10-10-2018 AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 467 542 5.0E-16 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 SUPERFAMILY SSF56801 17 553 1.11E-152 T 10-10-2018 AMQ28_00710 de24668d4e7d0f6a6f0185261607b317 563 Pfam PF00501 AMP-binding enzyme 26 458 1.8E-109 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_04215 da271d7f406c4b0c39cd3a3d1cbff537 189 SUPERFAMILY SSF51283 3 188 6.54E-55 T 10-10-2018 IPR036157 dUTPase-like superfamily AMQ28_04215 da271d7f406c4b0c39cd3a3d1cbff537 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 7.5E-51 T 10-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMQ28_04215 da271d7f406c4b0c39cd3a3d1cbff537 189 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 28.915 T 10-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMQ28_04215 da271d7f406c4b0c39cd3a3d1cbff537 189 Gene3D G3DSA:2.70.40.10 1 161 7.1E-55 T 10-10-2018 IPR036157 dUTPase-like superfamily AMQ28_04215 da271d7f406c4b0c39cd3a3d1cbff537 189 Pfam PF00692 dUTPase 81 184 1.8E-8 T 10-10-2018 IPR029054 dUTPase-like AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 Pfam PF00579 tRNA synthetases class I (W and Y) 6 288 1.9E-54 T 10-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 Gene3D G3DSA:3.40.50.620 10 329 6.1E-101 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 Gene3D G3DSA:1.10.240.10 188 302 6.1E-101 T 10-10-2018 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 7 333 1.2E-68 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 SUPERFAMILY SSF52374 9 333 8.73E-77 T 10-10-2018 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 71 90 2.5E-21 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 2.5E-21 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 149 170 2.5E-21 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 201 211 2.5E-21 T 10-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMQ28_03800 6abe58d3b6a3d8478cb04e44cd18bc9a 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11520 a86d471a443a1d2eb2aee4923dc2e588 150 SUPERFAMILY SSF51283 2 148 1.57E-53 T 10-10-2018 IPR036157 dUTPase-like superfamily AMQ28_11520 a86d471a443a1d2eb2aee4923dc2e588 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 149 2.6E-49 T 10-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMQ28_11520 a86d471a443a1d2eb2aee4923dc2e588 150 Pfam PF00692 dUTPase 15 148 2.4E-39 T 10-10-2018 IPR029054 dUTPase-like AMQ28_11520 a86d471a443a1d2eb2aee4923dc2e588 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 149 33.291 T 10-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMQ28_11520 a86d471a443a1d2eb2aee4923dc2e588 150 Gene3D G3DSA:2.70.40.10 1 149 2.1E-55 T 10-10-2018 IPR036157 dUTPase-like superfamily AMQ28_04565 d64836139f06b33633ec039982c7a18b 182 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 120 9.2E-29 T 10-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04565 d64836139f06b33633ec039982c7a18b 182 Gene3D G3DSA:1.20.58.1610 1 121 1.3E-33 T 10-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04565 d64836139f06b33633ec039982c7a18b 182 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 18.317 T 10-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 SUPERFAMILY SSF53738 261 367 1.18E-29 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 SUPERFAMILY SSF53738 4 175 2.59E-39 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 371 3.3E-23 T 10-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 7.7E-34 T 10-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 SUPERFAMILY SSF55957 370 456 4.01E-18 T 10-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Gene3D G3DSA:3.40.120.10 170 251 1.9E-27 T 10-10-2018 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Gene3D G3DSA:3.40.120.10 2 147 6.7E-51 T 10-10-2018 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Gene3D G3DSA:3.30.310.50 372 456 2.8E-24 T 10-10-2018 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 1.2E-19 T 10-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 SUPERFAMILY SSF53738 151 259 3.69E-25 T 10-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 5.8E-29 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 5.8E-29 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 5.8E-29 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 5.8E-29 T 10-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 437 1.7E-9 T 10-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 10-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMQ28_07675 1d88d664d9ebafff0469b75a6bc94723 456 Gene3D G3DSA:3.40.120.10 253 371 2.0E-32 T 10-10-2018 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 Pfam PF00107 Zinc-binding dehydrogenase 179 303 4.5E-29 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 SUPERFAMILY SSF50129 1 184 1.38E-53 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 Gene3D G3DSA:3.40.50.720 152 290 7.8E-126 T 10-10-2018 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 10-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 SUPERFAMILY SSF51735 143 310 3.52E-43 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 134 2.2E-31 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 SMART SM00829 12 339 1.2E-5 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_07090 e2f1e18a01a5d302ef2e4ee34130cc7c 343 Gene3D G3DSA:3.90.180.10 14 336 7.8E-126 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 SUPERFAMILY SSF51971 148 402 1.77E-68 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 Gene3D G3DSA:3.40.50.720 149 253 1.6E-13 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 Gene3D G3DSA:1.10.1060.10 13 148 6.5E-32 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 Gene3D G3DSA:3.50.50.60 254 401 7.3E-46 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 460 8.0E-24 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 472 4.1E-233 T 10-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 SUPERFAMILY SSF46548 10 160 8.37E-38 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 28 135 4.3E-36 T 10-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 1.7E-34 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 1.7E-34 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 1.7E-34 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 1.7E-34 T 10-10-2018 AMQ28_09765 69e91716f6919f268bc3365192f877fe 473 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 1.7E-34 T 10-10-2018 AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 Pfam PF08447 PAS fold 39 125 9.6E-14 T 10-10-2018 IPR013655 PAS fold-3 GO:0005515 AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 Gene3D G3DSA:3.30.450.20 24 135 1.7E-25 T 10-10-2018 AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 14 138 5.4E-12 T 10-10-2018 IPR000014 PAS domain AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 SMART SM00086 89 131 5.2E-6 T 10-10-2018 IPR001610 PAC motif AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 Pfam PF00990 Diguanylate cyclase, GGDEF domain 150 309 4.0E-48 T 10-10-2018 IPR000160 GGDEF domain AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 145 312 2.7E-47 T 10-10-2018 IPR000160 GGDEF domain AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 Gene3D G3DSA:3.30.70.270 136 312 5.3E-53 T 10-10-2018 AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 SUPERFAMILY SSF55785 20 133 9.77E-17 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 SUPERFAMILY SSF55073 154 312 1.8E-45 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_11590 b6614232af2aaf31c5a14328adc24cd6 325 SMART SM00267 138 314 3.0E-61 T 10-10-2018 IPR000160 GGDEF domain AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PIRSF PIRSF001174 5 788 0.0 T 10-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 SUPERFAMILY SSF88697 18 211 6.21E-29 T 10-10-2018 IPR015947 PUA-like superfamily AMQ28_12460 94e1200810253967575a95e62640ff9c 808 SMART SM00464 18 213 3.1E-61 T 10-10-2018 IPR003111 Lon, substrate-binding domain AMQ28_12460 94e1200810253967575a95e62640ff9c 808 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 689 697 - T 10-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 211 4.1E-27 T 10-10-2018 IPR003111 Lon, substrate-binding domain AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Gene3D G3DSA:1.20.58.1480 131 255 1.9E-24 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Gene3D G3DSA:3.30.230.10 598 785 6.9E-74 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Gene3D G3DSA:2.30.130.40 12 126 2.5E-27 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 SUPERFAMILY SSF52540 326 599 2.54E-51 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 583 785 1.4E-85 T 10-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 SMART SM00382 360 504 1.2E-10 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Gene3D G3DSA:1.10.8.60 503 597 1.9E-31 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Gene3D G3DSA:3.40.50.300 325 502 6.6E-63 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 TIGRFAM TIGR00763 lon: endopeptidase La 20 783 1.1E-279 T 10-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 SUPERFAMILY SSF54211 608 783 1.86E-54 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 364 500 1.2E-19 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 Hamap MF_01973 Lon protease [lon]. 19 785 66.393 T 10-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 368 387 1.2E-49 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 739 757 1.2E-49 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 608 624 1.2E-49 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 716 735 1.2E-49 T 10-10-2018 AMQ28_12460 94e1200810253967575a95e62640ff9c 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 686 705 1.2E-49 T 10-10-2018 AMQ28_10760 9e21815ff1cd4270bab4ef4e070b94b0 668 ProDom PD062361 VC1766 YFJM PM0595 583 647 7.0E-4 T 10-10-2018 AMQ28_10760 9e21815ff1cd4270bab4ef4e070b94b0 668 Pfam PF03235 Protein of unknown function DUF262 13 215 3.9E-31 T 10-10-2018 IPR004919 Domain of unknown function DUF262 AMQ28_10760 9e21815ff1cd4270bab4ef4e070b94b0 668 Pfam PF07510 Protein of unknown function (DUF1524) 525 647 1.3E-19 T 10-10-2018 IPR011089 Domain of unknown function DUF1524 AMQ28_11405 81e822d14eec6fa6703059b4ccf55c9c 215 SUPERFAMILY SSF56784 2 214 5.98E-50 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_11405 81e822d14eec6fa6703059b4ccf55c9c 215 Gene3D G3DSA:1.10.150.240 16 84 1.2E-55 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMQ28_11405 81e822d14eec6fa6703059b4ccf55c9c 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 177 8.7E-8 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_11405 81e822d14eec6fa6703059b4ccf55c9c 215 Gene3D G3DSA:3.40.50.1000 5 205 1.2E-55 T 10-10-2018 IPR023214 HAD superfamily AMQ28_11405 81e822d14eec6fa6703059b4ccf55c9c 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 1.3E-24 T 10-10-2018 AMQ28_08715 4b0bab2221c57e915b54e3751d9da04e 426 SUPERFAMILY SSF53756 60 411 1.26E-11 T 10-10-2018 AMQ28_08715 4b0bab2221c57e915b54e3751d9da04e 426 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 37 215 2.0E-52 T 10-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMQ28_08715 4b0bab2221c57e915b54e3751d9da04e 426 Pfam PF00534 Glycosyl transferases group 1 264 405 5.3E-9 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_08715 4b0bab2221c57e915b54e3751d9da04e 426 Gene3D G3DSA:3.40.50.11720 32 213 5.6E-40 T 10-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMQ28_08715 4b0bab2221c57e915b54e3751d9da04e 426 Gene3D G3DSA:3.40.50.2000 219 409 1.5E-62 T 10-10-2018 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-44 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 PIRSF PIRSF001223 1 100 2.4E-48 T 10-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 8.1E-52 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.575 T 10-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 SUPERFAMILY SSF54111 1 99 1.44E-44 T 10-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 Gene3D G3DSA:3.30.280.10 4 100 1.2E-44 T 10-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07485 7b1a4b66a254e464e93e2725e11fcd2f 100 Pfam PF00547 Urease, gamma subunit 1 99 4.8E-45 T 10-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 Gene3D G3DSA:3.40.50.300 6 282 3.6E-65 T 10-10-2018 AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 SMART SM00382 37 224 2.6E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 Pfam PF12704 MacB-like periplasmic core domain 281 499 1.3E-39 T 10-10-2018 IPR025857 MacB-like periplasmic core domain AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 Pfam PF00005 ABC transporter 28 176 7.2E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 Pfam PF02687 FtsX-like permease family 563 652 1.4E-10 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMQ28_05865 e41f746ad6fce0f5051d14697d8d8d91 659 SUPERFAMILY SSF52540 8 228 1.11E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 Pfam PF00410 Ribosomal protein S8 5 130 1.5E-48 T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.533 T 10-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 Gene3D G3DSA:3.30.1490.10 74 130 2.3E-21 T 10-10-2018 AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 Gene3D G3DSA:3.30.1370.30 2 73 9.5E-29 T 10-10-2018 AMQ28_10255 80c6a16281178fc6e3c25da76d3f4b13 131 SUPERFAMILY SSF56047 2 130 1.3E-46 T 10-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 Gene3D G3DSA:3.40.50.970 468 701 4.7E-107 T 10-10-2018 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 Gene3D G3DSA:3.40.50.920 702 883 1.3E-65 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 PIRSF PIRSF000156 1 884 0.0 T 10-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 SUPERFAMILY SSF52922 697 881 5.3E-49 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 Gene3D G3DSA:3.40.50.970 53 467 1.3E-131 T 10-10-2018 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 SUPERFAMILY SSF52518 54 465 2.4E-135 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 185 292 5.7E-8 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 880 0.0 T 10-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMQ28_08655 fc08d8fcaa08f75de2468e38667b5ed8 900 SUPERFAMILY SSF52518 469 695 1.11E-95 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 SUPERFAMILY SSF48498 89 199 1.56E-15 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 2.2E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 2.2E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 Gene3D G3DSA:1.10.357.10 74 200 5.2E-13 T 10-10-2018 AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.2E-12 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 SUPERFAMILY SSF46689 9 82 2.84E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_04990 55634c35e29a2a3b6c43d08c11d58468 200 Gene3D G3DSA:1.10.10.60 6 73 7.7E-22 T 10-10-2018 AMQ28_05945 37ba36729dbd61927e030e2f355a98e1 572 SUPERFAMILY SSF51735 427 562 1.04E-22 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_05945 37ba36729dbd61927e030e2f355a98e1 572 Gene3D G3DSA:3.40.50.720 424 567 1.9E-26 T 10-10-2018 AMQ28_05945 37ba36729dbd61927e030e2f355a98e1 572 Gene3D G3DSA:1.20.1530.20 4 401 4.2E-76 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_05945 37ba36729dbd61927e030e2f355a98e1 572 Pfam PF00999 Sodium/hydrogen exchanger family 13 389 2.7E-70 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMQ28_05945 37ba36729dbd61927e030e2f355a98e1 572 Pfam PF02254 TrkA-N domain 431 543 7.3E-19 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 PRINTS PR01021 OMPA domain signature 103 125 1.0E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 PRINTS PR01021 OMPA domain signature 151 167 1.0E-6 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 Pfam PF00691 OmpA family 102 200 6.5E-24 T 10-10-2018 IPR006665 OmpA-like domain AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 Gene3D G3DSA:3.30.1330.60 64 210 3.3E-43 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 ProSitePatterns PS01068 OmpA-like domain. 138 182 - T 10-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMQ28_11510 c12eb3bf23e94727ee49f6f0f4fba28c 210 SUPERFAMILY SSF103088 88 205 9.55E-36 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_03055 e38871b4c47039e176782bdff5fe5774 189 SUPERFAMILY SSF101874 26 186 3.14E-38 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMQ28_03055 e38871b4c47039e176782bdff5fe5774 189 SMART SM00867 28 187 2.5E-37 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMQ28_03055 e38871b4c47039e176782bdff5fe5774 189 Pfam PF04264 YceI-like domain 30 184 1.3E-30 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMQ28_03055 e38871b4c47039e176782bdff5fe5774 189 Gene3D G3DSA:2.40.128.110 27 186 8.4E-38 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 Gene3D G3DSA:1.10.300.10 102 202 1.3E-97 T 10-10-2018 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 Pfam PF00709 Adenylosuccinate synthetase 5 431 4.5E-168 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 SMART SM00788 4 432 6.5E-277 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 10-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 Gene3D G3DSA:3.90.170.10 268 439 1.9E-61 T 10-10-2018 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 Gene3D G3DSA:3.40.440.10 6 250 1.3E-97 T 10-10-2018 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 439 202.28 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 10-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 437 1.2E-169 T 10-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMQ28_02385 7163b954b30bc95be57a4096bd72c0b6 439 SUPERFAMILY SSF52540 3 438 1.27E-167 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10820 769ee770eeb774ba8fc2dbf6d51f1e66 262 SUPERFAMILY SSF52096 3 243 4.67E-64 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_10820 769ee770eeb774ba8fc2dbf6d51f1e66 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMQ28_10820 769ee770eeb774ba8fc2dbf6d51f1e66 262 Gene3D G3DSA:3.90.226.10 2 249 1.0E-63 T 10-10-2018 AMQ28_10820 769ee770eeb774ba8fc2dbf6d51f1e66 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 220 4.4E-41 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82693 569 663 3.4E-25 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.70.1430 38 822 0.0 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:1.20.1640.10 517 1039 0.0 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Pfam PF00873 AcrB/AcrD/AcrF family 1 1042 0.0 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82714 727 814 7.19E-23 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82866 296 497 5.49E-48 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82693 38 131 4.19E-28 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.70.1430 571 673 0.0 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.70.1440 674 874 0.0 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82866 811 1044 2.49E-41 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.8E-110 T 10-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82714 182 272 3.79E-22 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:3.30.2090.10 726 814 0.0 T 10-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1057 0.0 T 10-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 SUPERFAMILY SSF82693 135 330 2.96E-24 T 10-10-2018 AMQ28_11940 bd5ec48904462d30aeae85a4484dbd28 1060 Gene3D G3DSA:1.20.1640.10 8 516 0.0 T 10-10-2018 AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 2.2E-61 T 10-10-2018 AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.2E-45 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 SUPERFAMILY SSF51735 8 255 1.93E-81 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 8.7E-13 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.7E-13 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 8.7E-13 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11760 e3762ea3aedbaa4d1ce798ea9ae3300d 256 Gene3D G3DSA:3.40.50.720 1 255 1.3E-80 T 10-10-2018 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Gene3D G3DSA:1.20.140.10 288 464 2.5E-41 T 10-10-2018 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 473 599 5.9E-29 T 10-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 157 4.7E-18 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 2.0E-7 T 10-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 SUPERFAMILY SSF47203 287 476 6.6E-45 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 SUPERFAMILY SSF56645 37 280 9.56E-61 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Gene3D G3DSA:2.40.110.10 161 287 6.8E-28 T 10-10-2018 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Gene3D G3DSA:1.10.540.10 33 159 1.4E-21 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 2.4E-17 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_10035 7e74c838a94ba8c08c67dae192cd7dba 607 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 457 2.5E-21 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_08060 a0848f08dc9aa2c9f00b15d47997633e 336 SUPERFAMILY SSF53850 124 211 9.99E-5 T 10-10-2018 AMQ28_08060 a0848f08dc9aa2c9f00b15d47997633e 336 Gene3D G3DSA:3.40.190.170 58 246 6.0E-11 T 10-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMQ28_07255 7c55c8e9fc5e595519bada2d36eb8bd4 210 Pfam PF09335 SNARE associated Golgi protein 45 171 2.1E-22 T 10-10-2018 IPR032816 SNARE associated Golgi protein AMQ28_03235 ed889d2b52cf9b306262dd931a0c1b36 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 2.0E-152 T 10-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMQ28_03235 ed889d2b52cf9b306262dd931a0c1b36 411 Pfam PF12704 MacB-like periplasmic core domain 28 240 1.8E-14 T 10-10-2018 IPR025857 MacB-like periplasmic core domain AMQ28_03235 ed889d2b52cf9b306262dd931a0c1b36 411 Pfam PF02687 FtsX-like permease family 298 404 9.5E-13 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Gene3D G3DSA:3.90.980.10 173 294 2.9E-37 T 10-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Gene3D G3DSA:3.90.580.10 1 100 1.0E-36 T 10-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Pfam PF13662 Toprim domain 316 379 1.0E-14 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 SUPERFAMILY SSF57783 1 97 2.04E-33 T 10-10-2018 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Pfam PF08275 DNA primase catalytic core, N-terminal domain 184 304 4.1E-37 T 10-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Pfam PF01807 CHC2 zinc finger 4 98 3.5E-38 T 10-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 SUPERFAMILY SSF56731 174 472 1.96E-93 T 10-10-2018 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 SMART SM00400 34 88 8.2E-30 T 10-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 SMART SM00493 312 382 2.6E-15 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Pfam PF10410 DnaB-helicase binding domain of primase 421 475 3.6E-4 T 10-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Hamap MF_00974 DNA primase [dnaG]. 2 633 26.445 T 10-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMQ28_12125 a082fd2840e35f926b2c4c9341f63f7f 634 Gene3D G3DSA:3.40.1360.10 295 418 6.0E-37 T 10-10-2018 AMQ28_12360 b475c2daa20e503f8ff02329aef4cab2 250 Gene3D G3DSA:2.40.128.640 39 148 6.6E-14 T 10-10-2018 AMQ28_12360 b475c2daa20e503f8ff02329aef4cab2 250 Pfam PF04170 NlpE N-terminal domain 51 138 4.6E-12 T 10-10-2018 IPR007298 Copper resistance lipoprotein NlpE AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 Gene3D G3DSA:3.30.700.10 12 66 1.6E-7 T 10-10-2018 AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 PRINTS PR00885 Bacterial general secretion pathway protein H signature 22 36 1.1E-9 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 PRINTS PR00885 Bacterial general secretion pathway protein H signature 147 162 1.1E-9 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 PRINTS PR00885 Bacterial general secretion pathway protein H signature 7 21 1.1E-9 T 10-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 2.6E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 31 7.3E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01695 a0409769da32e72df66461484c75bb4a 186 SUPERFAMILY SSF54523 12 120 3.06E-11 T 10-10-2018 AMQ28_04625 1b27e366cbea32aaeebbc413d5639abc 595 Pfam PF00920 Dehydratase family 46 572 2.2E-157 T 10-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04625 1b27e366cbea32aaeebbc413d5639abc 595 SUPERFAMILY SSF143975 8 380 1.07E-116 T 10-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04625 1b27e366cbea32aaeebbc413d5639abc 595 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 129 139 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04625 1b27e366cbea32aaeebbc413d5639abc 595 SUPERFAMILY SSF52016 383 579 1.73E-46 T 10-10-2018 AMQ28_04625 1b27e366cbea32aaeebbc413d5639abc 595 Gene3D G3DSA:3.50.30.80 383 547 1.7E-34 T 10-10-2018 AMQ28_05725 d678df0ac52854862d96926204546eb4 135 Pfam PF12836 Helix-hairpin-helix motif 71 133 4.9E-22 T 10-10-2018 AMQ28_05725 d678df0ac52854862d96926204546eb4 135 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 72 133 1.1E-25 T 10-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AMQ28_05725 d678df0ac52854862d96926204546eb4 135 Gene3D G3DSA:1.10.150.280 64 134 9.1E-22 T 10-10-2018 AMQ28_05725 d678df0ac52854862d96926204546eb4 135 SMART SM00278 113 132 160.0 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMQ28_05725 d678df0ac52854862d96926204546eb4 135 SMART SM00278 83 102 0.33 T 10-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMQ28_05725 d678df0ac52854862d96926204546eb4 135 SUPERFAMILY SSF47781 69 133 1.45E-26 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_03270 2c9a92cd9e4e3643cb3a27320f699816 368 Gene3D G3DSA:1.10.287.470 116 245 9.0E-25 T 10-10-2018 AMQ28_03270 2c9a92cd9e4e3643cb3a27320f699816 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 77 310 5.4E-8 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_03270 2c9a92cd9e4e3643cb3a27320f699816 368 Gene3D G3DSA:2.40.30.170 72 360 9.0E-25 T 10-10-2018 AMQ28_03270 2c9a92cd9e4e3643cb3a27320f699816 368 Gene3D G3DSA:2.40.50.100 82 280 9.0E-25 T 10-10-2018 AMQ28_03270 2c9a92cd9e4e3643cb3a27320f699816 368 SUPERFAMILY SSF111369 213 315 7.45E-7 T 10-10-2018 AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 Pfam PF00571 CBS domain 15 59 3.7E-10 T 10-10-2018 IPR000644 CBS domain AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 Pfam PF00571 CBS domain 73 127 4.5E-15 T 10-10-2018 IPR000644 CBS domain AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 SUPERFAMILY SSF54631 10 141 6.32E-34 T 10-10-2018 AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 Gene3D G3DSA:3.10.580.10 1 143 1.5E-44 T 10-10-2018 AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 SMART SM00116 80 127 1.5E-9 T 10-10-2018 IPR000644 CBS domain AMQ28_00105 cb7cf0f123148941295f33f75fda11f2 143 SMART SM00116 15 62 6.8E-7 T 10-10-2018 IPR000644 CBS domain AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 92 105 - T 10-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 Gene3D G3DSA:3.30.540.10 10 160 2.2E-32 T 10-10-2018 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 2.0E-8 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 2.0E-8 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 92 108 2.0E-8 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 Gene3D G3DSA:3.40.190.80 161 269 4.3E-25 T 10-10-2018 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 SUPERFAMILY SSF56655 14 278 7.46E-56 T 10-10-2018 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 12 267 34.06 T 10-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMQ28_13900 138ff607f60ae6b76e5af78f227f68df 285 Pfam PF00459 Inositol monophosphatase family 18 259 4.1E-39 T 10-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 Gene3D G3DSA:3.40.50.170 1 213 2.0E-74 T 10-10-2018 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 313 5.7E-90 T 10-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 Gene3D G3DSA:3.10.25.10 214 318 5.1E-25 T 10-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 SUPERFAMILY SSF50486 212 319 1.88E-26 T 10-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 Pfam PF00551 Formyl transferase 2 185 1.3E-45 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 314 34.402 T 10-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 Pfam PF02911 Formyl transferase, C-terminal domain 211 310 5.2E-22 T 10-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_07915 5a9a02676b31ba3832b606357c45fd03 319 SUPERFAMILY SSF53328 2 187 8.77E-58 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 Gene3D G3DSA:3.20.20.70 140 299 8.1E-25 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 Pfam PF00293 NUDIX domain 9 125 1.8E-15 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 SUPERFAMILY SSF51391 192 298 3.53E-22 T 10-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 Gene3D G3DSA:3.90.79.10 3 130 1.4E-25 T 10-10-2018 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 Pfam PF02581 Thiamine monophosphate synthase 161 297 3.3E-18 T 10-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_02525 cf61986e321c79d0a7d20e86fa0e7206 299 SUPERFAMILY SSF55811 7 126 2.3E-25 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_07975 709d8d36de9483e88c287264107758ac 222 Gene3D G3DSA:2.40.400.10 3 192 8.1E-17 T 10-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMQ28_07975 709d8d36de9483e88c287264107758ac 222 SUPERFAMILY SSF160104 9 151 1.26E-17 T 10-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMQ28_07975 709d8d36de9483e88c287264107758ac 222 Pfam PF06314 Acetoacetate decarboxylase (ADC) 19 131 6.4E-10 T 10-10-2018 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 Gene3D G3DSA:3.40.190.10 108 299 1.4E-45 T 10-10-2018 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 Pfam PF03466 LysR substrate binding domain 95 300 3.0E-27 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 Gene3D G3DSA:3.40.190.10 168 273 1.4E-45 T 10-10-2018 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 Gene3D G3DSA:1.10.10.10 11 98 8.4E-21 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 71 5.6E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 SUPERFAMILY SSF53850 97 300 7.06E-29 T 10-10-2018 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 SUPERFAMILY SSF46785 11 90 1.99E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 8.8E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 8.8E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 8.8E-5 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03550 4b51e02daabd5c5d23a5902b00c785ac 307 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 5 302 1.3E-143 T 10-10-2018 IPR011781 D-serine deaminase transcriptional activator AMQ28_01235 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_01235 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_08960 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_08960 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_01010 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_01010 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_04240 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_04240 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_09110 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_09110 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_09615 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_09615 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_03970 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_03970 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_12450 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_12450 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_09095 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_09095 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_00790 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_00790 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_12200 3aa56444d76a3ba3c0240f4b28c2fe3b 101 Pfam PF01527 Transposase 3 65 3.0E-5 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_12200 3aa56444d76a3ba3c0240f4b28c2fe3b 101 SUPERFAMILY SSF48295 2 60 2.51E-13 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 Pfam PF07729 FCD domain 96 222 6.2E-25 T 10-10-2018 IPR011711 GntR, C-terminal AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 Gene3D G3DSA:1.20.120.530 94 230 6.1E-32 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 Gene3D G3DSA:1.10.10.10 1 66 2.0E-18 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 SMART SM00895 95 223 9.0E-22 T 10-10-2018 IPR011711 GntR, C-terminal AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 SUPERFAMILY SSF48008 94 230 1.39E-29 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 65 1.1E-17 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.3E-10 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.3E-10 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 SUPERFAMILY SSF46785 3 70 1.34E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_12660 58adff8480ef7899237b14caa8fbfca5 247 SMART SM00345 7 66 2.4E-20 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 416 2.0E-145 T 10-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 SUPERFAMILY SSF55681 7 324 4.77E-96 T 10-10-2018 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 PIRSF PIRSF001549 1 428 1.0E-118 T 10-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 SUPERFAMILY SSF52954 343 427 2.29E-15 T 10-10-2018 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 Gene3D G3DSA:3.40.50.800 329 427 1.1E-24 T 10-10-2018 IPR036621 Anticodon-binding domain superfamily AMQ28_05755 991de828c8af9d4b683436c960f18606 431 Gene3D G3DSA:3.30.930.10 2 326 2.2E-109 T 10-10-2018 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 Pfam PF13393 Histidyl-tRNA synthetase 9 316 1.7E-43 T 10-10-2018 AMQ28_05755 991de828c8af9d4b683436c960f18606 431 Pfam PF03129 Anticodon binding domain 345 426 2.3E-9 T 10-10-2018 IPR004154 Anticodon-binding AMQ28_05755 991de828c8af9d4b683436c960f18606 431 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 430 31.601 T 10-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 SUPERFAMILY SSF53850 89 296 3.1E-34 T 10-10-2018 AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 Gene3D G3DSA:3.40.190.10 90 292 1.1E-66 T 10-10-2018 AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 9.2E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 Gene3D G3DSA:3.40.190.10 163 271 1.1E-66 T 10-10-2018 AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 Pfam PF03466 LysR substrate binding domain 90 294 2.2E-33 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 Gene3D G3DSA:1.10.10.10 1 89 2.0E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_01830 89cfe9db770fdd0ef5f7cde2e723b959 306 SUPERFAMILY SSF46785 1 112 5.89E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_12140 932ff698b03d41a3312e35276e3afe9c 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 28 243 1.8E-56 T 10-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMQ28_12140 932ff698b03d41a3312e35276e3afe9c 246 SUPERFAMILY SSF64438 19 245 4.03E-62 T 10-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMQ28_12140 932ff698b03d41a3312e35276e3afe9c 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 245 7.8E-47 T 10-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMQ28_12140 932ff698b03d41a3312e35276e3afe9c 246 Gene3D G3DSA:3.60.140.10 11 246 1.3E-63 T 10-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 274 1.2E-53 T 10-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Gene3D G3DSA:3.40.50.300 10 275 1.7E-70 T 10-10-2018 AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Gene3D G3DSA:1.10.10.160 109 193 1.7E-70 T 10-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Pfam PF13361 UvrD-like helicase C-terminal domain 281 601 7.4E-43 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Gene3D G3DSA:1.10.486.10 386 531 2.6E-65 T 10-10-2018 AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 Gene3D G3DSA:3.40.50.300 284 625 2.6E-65 T 10-10-2018 AMQ28_05970 0a2240b1649c048737b576969c33b1e9 663 SUPERFAMILY SSF52540 7 604 3.37E-121 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 Pfam PF00890 FAD binding domain 13 392 1.3E-90 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 PIRSF PIRSF000171 3 292 1.1E-17 T 10-10-2018 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 PIRSF PIRSF000171 336 537 2.1E-15 T 10-10-2018 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 SUPERFAMILY SSF46977 425 528 2.09E-32 T 10-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 Gene3D G3DSA:1.20.58.100 425 540 3.2E-43 T 10-10-2018 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 SUPERFAMILY SSF56425 238 353 1.39E-41 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 523 2.8E-14 T 10-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 SUPERFAMILY SSF51905 5 447 2.23E-65 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 11 520 6.2E-191 T 10-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 1.4E-7 T 10-10-2018 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.4E-7 T 10-10-2018 AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 Gene3D G3DSA:3.50.50.60 13 404 1.6E-147 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02965 be08b046db72f67e8c91643a6d60ee5c 545 Gene3D G3DSA:3.90.700.10 248 358 1.6E-147 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_07530 19144abe268e124549d5bd045dd82e85 282 Gene3D G3DSA:3.40.30.10 133 281 7.9E-33 T 10-10-2018 AMQ28_07530 19144abe268e124549d5bd045dd82e85 282 Pfam PF00578 AhpC/TSA family 156 259 1.8E-12 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_07530 19144abe268e124549d5bd045dd82e85 282 SUPERFAMILY SSF52833 157 280 1.94E-32 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_07530 19144abe268e124549d5bd045dd82e85 282 ProSitePatterns PS00194 Thioredoxin family active site. 173 191 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_07530 19144abe268e124549d5bd045dd82e85 282 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 7 126 1.4E-10 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 SUPERFAMILY SSF46785 12 119 1.41E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 Pfam PF03466 LysR substrate binding domain 99 307 6.7E-29 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 Gene3D G3DSA:1.10.10.10 8 95 1.7E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 Gene3D G3DSA:3.40.190.10 115 298 2.9E-35 T 10-10-2018 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 Gene3D G3DSA:3.40.190.10 177 280 2.9E-35 T 10-10-2018 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 4.3E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 9.6E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_04615 fc21cbc996b558d3ae8a1cacaab6bf47 314 SUPERFAMILY SSF53850 102 307 3.4E-33 T 10-10-2018 AMQ28_02625 1ec663e4f0016e79026c4d7bc4a634da 669 SUPERFAMILY SSF54001 312 590 2.38E-50 T 10-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMQ28_02625 1ec663e4f0016e79026c4d7bc4a634da 669 Gene3D G3DSA:3.10.620.30 320 488 1.2E-20 T 10-10-2018 AMQ28_02625 1ec663e4f0016e79026c4d7bc4a634da 669 Pfam PF11992 Domain of unknown function (DUF3488) 10 322 1.3E-71 T 10-10-2018 IPR021878 Protein of unknown function DUF3488 AMQ28_02625 1ec663e4f0016e79026c4d7bc4a634da 669 SMART SM00460 407 477 1.4E-17 T 10-10-2018 IPR002931 Transglutaminase-like AMQ28_02625 1ec663e4f0016e79026c4d7bc4a634da 669 Pfam PF01841 Transglutaminase-like superfamily 367 475 5.2E-22 T 10-10-2018 IPR002931 Transglutaminase-like AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Gene3D G3DSA:1.10.150.310 490 621 1.8E-49 T 10-10-2018 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Gene3D G3DSA:3.30.420.140 315 442 2.2E-131 T 10-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Gene3D G3DSA:1.10.3500.10 112 489 2.2E-131 T 10-10-2018 IPR023323 Tex-like domain superfamily AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SMART SM00316 640 711 3.7E-24 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SMART SM00732 316 415 2.8E-31 T 10-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Pfam PF16921 Tex protein YqgF-like domain 317 442 2.3E-49 T 10-10-2018 IPR032639 Tex protein, YqgF-like domain AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Gene3D G3DSA:1.10.10.650 1 108 2.8E-36 T 10-10-2018 IPR023319 Tex-like protein, HTH domain superfamily AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Pfam PF09371 Tex-like protein N-terminal domain 8 187 3.6E-51 T 10-10-2018 IPR018974 Tex-like protein, N-terminal AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Pfam PF00575 S1 RNA binding domain 640 711 4.1E-20 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SUPERFAMILY SSF53098 312 460 3.87E-48 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SUPERFAMILY SSF50249 628 713 1.42E-24 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SUPERFAMILY SSF47781 461 548 4.45E-26 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SUPERFAMILY SSF158832 1 311 1.7E-85 T 10-10-2018 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Pfam PF12836 Helix-hairpin-helix motif 482 546 1.8E-25 T 10-10-2018 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 Gene3D G3DSA:2.40.50.140 622 714 6.8E-29 T 10-10-2018 AMQ28_09525 d2a877cad8a4bd415323f09252f23c59 787 SUPERFAMILY SSF47781 552 623 6.45E-19 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 Gene3D G3DSA:2.40.50.100 119 258 1.2E-64 T 10-10-2018 AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 Gene3D G3DSA:2.40.420.20 94 400 1.2E-64 T 10-10-2018 AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 SUPERFAMILY SSF111369 115 337 9.29E-24 T 10-10-2018 AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 103 330 1.1E-30 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 Gene3D G3DSA:1.10.287.470 153 223 1.2E-64 T 10-10-2018 AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 Gene3D G3DSA:2.40.30.170 105 338 1.2E-64 T 10-10-2018 AMQ28_09560 50e0a65a9b6ea6f7ff3283929c4692d5 422 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 97 410 6.4E-43 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 Pfam PF01553 Acyltransferase 291 429 1.7E-19 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 SUPERFAMILY SSF69593 280 501 1.05E-21 T 10-10-2018 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 PIRSF PIRSF000437 26 831 1.7E-201 T 10-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 PIRSF PIRSF500064 8 833 9.9E-208 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 17 794 2.9E-249 T 10-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 AMQ28_00555 aed3538cc3dfce9bfd24de70d7f92ec1 842 SMART SM00563 308 435 1.1E-23 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_07250 46a0ae2efb2f1dfb99dc2819c2a29fe5 139 Pfam PF07681 DoxX 23 101 6.6E-18 T 10-10-2018 IPR032808 DoxX family AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 Pfam PF10727 Rossmann-like domain 3 107 3.8E-10 T 10-10-2018 IPR019665 Putative oxidoreductase/dehydrogenase, Rossmann-like domain AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 SUPERFAMILY SSF48179 159 256 3.74E-25 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 Gene3D G3DSA:1.10.1040.20 156 256 3.0E-34 T 10-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 Gene3D G3DSA:3.40.50.720 1 154 4.8E-41 T 10-10-2018 AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 Pfam PF10728 Domain of unknown function (DUF2520) 126 251 6.7E-30 T 10-10-2018 IPR018931 Domain of unknown function DUF2520 AMQ28_02315 483941c43bc82c75f9c0e1d25b26d224 258 SUPERFAMILY SSF51735 2 156 2.03E-29 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10190 2201cf44cc34b9907f9a9195dae8fb82 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 2 200 32.606 T 10-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10190 2201cf44cc34b9907f9a9195dae8fb82 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 196 2.3E-61 T 10-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMQ28_10190 2201cf44cc34b9907f9a9195dae8fb82 200 Gene3D G3DSA:3.40.1370.10 4 199 2.0E-65 T 10-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10190 2201cf44cc34b9907f9a9195dae8fb82 200 SUPERFAMILY SSF52166 7 196 1.7E-68 T 10-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10190 2201cf44cc34b9907f9a9195dae8fb82 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 196 5.2E-71 T 10-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 Gene3D G3DSA:1.25.40.10 427 564 8.7E-16 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 Pfam PF13181 Tetratricopeptide repeat 454 484 0.019 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 Gene3D G3DSA:1.25.40.10 162 308 9.1E-13 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 Gene3D G3DSA:1.25.40.10 309 426 1.0E-5 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 Gene3D G3DSA:1.25.40.10 26 161 8.7E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SUPERFAMILY SSF48452 73 340 2.84E-14 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SUPERFAMILY SSF48452 386 553 2.47E-15 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SMART SM00028 383 416 15.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SMART SM00028 180 213 0.095 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SMART SM00028 486 519 56.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SMART SM00028 456 485 250.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_12115 626f6965a42de7694e50f54cfeabdf7c 570 SMART SM00028 114 147 15.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_10925 ed1112507a6444c5c48bfe022a367435 353 Gene3D G3DSA:3.40.50.720 2 325 5.5E-135 T 10-10-2018 AMQ28_10925 ed1112507a6444c5c48bfe022a367435 353 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 3.9E-97 T 10-10-2018 IPR016040 NAD(P)-binding domain AMQ28_10925 ed1112507a6444c5c48bfe022a367435 353 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 1.2E-154 T 10-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMQ28_10925 ed1112507a6444c5c48bfe022a367435 353 Gene3D G3DSA:3.90.25.10 201 333 5.5E-135 T 10-10-2018 AMQ28_10925 ed1112507a6444c5c48bfe022a367435 353 SUPERFAMILY SSF51735 1 337 3.58E-92 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03855 554b6bc1abc15bf205ce9f437d6da3d4 270 Gene3D G3DSA:1.20.1540.10 14 223 3.4E-34 T 10-10-2018 IPR035952 Rhomboid-like superfamily AMQ28_03855 554b6bc1abc15bf205ce9f437d6da3d4 270 Pfam PF01694 Rhomboid family 64 216 5.1E-34 T 10-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMQ28_03855 554b6bc1abc15bf205ce9f437d6da3d4 270 SUPERFAMILY SSF144091 16 220 2.88E-38 T 10-10-2018 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 10-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 SUPERFAMILY SSF51905 7 261 2.47E-52 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 618 7.4E-271 T 10-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Pfam PF13932 GidA associated domain 402 612 1.6E-73 T 10-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 10-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Gene3D G3DSA:3.50.50.60 2 220 1.1E-86 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Gene3D G3DSA:3.50.50.60 304 458 4.8E-55 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Gene3D G3DSA:1.10.10.1800 459 547 4.8E-21 T 10-10-2018 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Gene3D G3DSA:1.10.150.570 566 619 1.1E-20 T 10-10-2018 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Pfam PF01134 Glucose inhibited division protein A 8 396 1.4E-164 T 10-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 621 41.654 T 10-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMQ28_13795 4f8b8479aba3a5316249727dcb699fa9 626 SMART SM01228 543 614 2.6E-40 T 10-10-2018 AMQ28_08795 83573cce43656d6ba7d985983e09f157 293 Pfam PF16956 Putative general bacterial porin 1 291 7.1E-17 T 10-10-2018 IPR031593 Putative general bacterial porin AMQ28_08795 83573cce43656d6ba7d985983e09f157 293 SUPERFAMILY SSF56935 101 293 8.7E-5 T 10-10-2018 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 ProSitePatterns PS00163 Fumarate lyases signature. 291 300 - T 10-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 Gene3D G3DSA:1.10.40.30 379 445 3.6E-146 T 10-10-2018 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 SUPERFAMILY SSF48557 4 447 8.48E-105 T 10-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 Pfam PF08328 Adenylosuccinate lyase C-terminal 328 445 4.9E-45 T 10-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 Gene3D G3DSA:1.10.275.10 1 115 1.5E-47 T 10-10-2018 IPR024083 Fumarase/histidase, N-terminal AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 Pfam PF00206 Lyase 12 309 1.0E-63 T 10-10-2018 IPR022761 Fumarate lyase, N-terminal AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 PRINTS PR00149 Fumarate lyase superfamily signature 160 178 1.5E-17 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 PRINTS PR00149 Fumarate lyase superfamily signature 115 133 1.5E-17 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 1.5E-17 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 1.5E-17 T 10-10-2018 IPR000362 Fumarate lyase family AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 10 454 6.5E-129 T 10-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_02755 9d75142ba6c62d857213c45bea72eabe 462 Gene3D G3DSA:1.20.200.10 116 446 3.6E-146 T 10-10-2018 AMQ28_08720 996ae57a191fdf61ce1ac65b7136b3bf 237 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 230 1.5E-30 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_08720 996ae57a191fdf61ce1ac65b7136b3bf 237 PIRSF PIRSF015601 1 235 2.5E-45 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_08720 996ae57a191fdf61ce1ac65b7136b3bf 237 Gene3D G3DSA:3.40.1280.10 6 235 4.2E-29 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_08720 996ae57a191fdf61ce1ac65b7136b3bf 237 Pfam PF04452 RNA methyltransferase 19 232 2.4E-43 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_08720 996ae57a191fdf61ce1ac65b7136b3bf 237 SUPERFAMILY SSF75217 71 233 3.27E-34 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_10605 a1b96f9fdc44cd06b5b0d38645a84f35 204 Pfam PF04279 Intracellular septation protein A 1 201 1.1E-45 T 10-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMQ28_10605 a1b96f9fdc44cd06b5b0d38645a84f35 204 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 202 15.627 T 10-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 Gene3D G3DSA:1.10.287.110 1 130 4.2E-26 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 Gene3D G3DSA:2.60.260.20 220 296 1.1E-17 T 10-10-2018 AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 SUPERFAMILY SSF49493 225 305 1.01E-14 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 Pfam PF00226 DnaJ domain 4 65 1.5E-21 T 10-10-2018 IPR001623 DnaJ domain AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 PRINTS PR00625 DnaJ domain signature 6 24 7.5E-17 T 10-10-2018 IPR001623 DnaJ domain AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 PRINTS PR00625 DnaJ domain signature 40 60 7.5E-17 T 10-10-2018 IPR001623 DnaJ domain AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 PRINTS PR00625 DnaJ domain signature 24 39 7.5E-17 T 10-10-2018 IPR001623 DnaJ domain AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 SUPERFAMILY SSF46565 3 118 2.88E-25 T 10-10-2018 IPR036869 Chaperone J-domain superfamily AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 SMART SM00271 3 60 4.9E-26 T 10-10-2018 IPR001623 DnaJ domain AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 Gene3D G3DSA:2.60.260.20 137 217 5.0E-19 T 10-10-2018 AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 SUPERFAMILY SSF49493 139 219 4.58E-13 T 10-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMQ28_06445 7832f9d38833f2e9ac399bd6d2d68a5e 322 Pfam PF01556 DnaJ C terminal domain 143 296 1.4E-30 T 10-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMQ28_05795 e9c1675e3475f53edf24e785018f1b90 427 Pfam PF13439 Glycosyltransferase Family 4 59 226 5.0E-23 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMQ28_05795 e9c1675e3475f53edf24e785018f1b90 427 Pfam PF00534 Glycosyl transferases group 1 236 397 3.8E-30 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_05795 e9c1675e3475f53edf24e785018f1b90 427 SUPERFAMILY SSF53756 47 417 1.7E-72 T 10-10-2018 AMQ28_05795 e9c1675e3475f53edf24e785018f1b90 427 Gene3D G3DSA:3.40.50.2000 224 401 4.5E-66 T 10-10-2018 AMQ28_05795 e9c1675e3475f53edf24e785018f1b90 427 Gene3D G3DSA:3.40.50.2000 50 223 4.5E-66 T 10-10-2018 AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 262 297 1.5E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 2.6E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 392 426 1.8E-8 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_07665 f329ad19257141bbc80cae6790826598 454 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMQ28_07665 f329ad19257141bbc80cae6790826598 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 2.0E-193 T 10-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMQ28_07665 f329ad19257141bbc80cae6790826598 454 SUPERFAMILY SSF51161 251 440 6.26E-50 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_07665 f329ad19257141bbc80cae6790826598 454 SUPERFAMILY SSF53448 1 249 7.93E-65 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Gene3D G3DSA:3.90.550.10 1 224 1.4E-66 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Pfam PF12804 MobA-like NTP transferase domain 5 134 1.7E-23 T 10-10-2018 IPR025877 MobA-like NTP transferase AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.194 T 10-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMQ28_07665 f329ad19257141bbc80cae6790826598 454 Gene3D G3DSA:2.160.10.10 225 453 1.4E-71 T 10-10-2018 AMQ28_11250 4289e2e9ca57766312843b01822bf259 283 PIRSF PIRSF000903 7 282 5.4E-93 T 10-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AMQ28_11250 4289e2e9ca57766312843b01822bf259 283 SUPERFAMILY SSF56300 10 270 1.4E-47 T 10-10-2018 AMQ28_11250 4289e2e9ca57766312843b01822bf259 283 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 9 276 1.7E-79 T 10-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AMQ28_11250 4289e2e9ca57766312843b01822bf259 283 Pfam PF00149 Calcineurin-like phosphoesterase 11 139 5.2E-14 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMQ28_11250 4289e2e9ca57766312843b01822bf259 283 Gene3D G3DSA:3.60.21.10 9 281 9.1E-66 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Gene3D G3DSA:2.60.34.10 379 515 1.0E-47 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Gene3D G3DSA:1.20.1270.10 519 614 8.6E-21 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Gene3D G3DSA:3.90.640.10 239 311 1.1E-108 T 10-10-2018 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 206 219 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Pfam PF00012 Hsp70 protein 21 596 2.0E-169 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 42.377 T 10-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Gene3D G3DSA:3.30.420.40 191 361 1.1E-108 T 10-10-2018 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 SUPERFAMILY SSF100920 381 535 2.49E-48 T 10-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 384 403 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 149 169 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 465 481 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 48 60 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 212 222 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.5E-52 T 10-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 SUPERFAMILY SSF53067 19 194 1.88E-52 T 10-10-2018 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 SUPERFAMILY SSF100934 503 614 9.42E-28 T 10-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 Gene3D G3DSA:3.30.420.40 22 374 1.1E-108 T 10-10-2018 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 614 6.8E-263 T 10-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 10-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMQ28_14060 b8696b0ea22bcb60e6aa2687db67a5d9 620 SUPERFAMILY SSF53067 201 376 1.05E-45 T 10-10-2018 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 SUPERFAMILY SSF90123 10 320 4.97E-66 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 Gene3D G3DSA:1.20.1560.10 1 324 3.4E-71 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 Gene3D G3DSA:3.40.50.300 327 575 6.5E-93 T 10-10-2018 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 Pfam PF00664 ABC transporter transmembrane region 23 291 2.3E-43 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 Pfam PF00005 ABC transporter 352 501 5.9E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 8 574 2.3E-202 T 10-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 SMART SM00382 360 547 2.5E-16 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_01730 0ced2a741caaaa9217030967585b4596 575 SUPERFAMILY SSF52540 325 570 5.84E-94 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11710 55b5e058e362845086666484c2827b68 163 Pfam PF04093 rod shape-determining protein MreD 18 157 3.7E-11 T 10-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMQ28_11710 55b5e058e362845086666484c2827b68 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 14 159 3.9E-23 T 10-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AMQ28_07490 0dec059e536499423915c1e585bd1d6e 102 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 4.9E-46 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07490 0dec059e536499423915c1e585bd1d6e 102 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.444 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07490 0dec059e536499423915c1e585bd1d6e 102 Gene3D G3DSA:2.10.150.10 1 102 9.8E-47 T 10-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07490 0dec059e536499423915c1e585bd1d6e 102 Pfam PF00699 Urease beta subunit 3 100 8.8E-45 T 10-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07490 0dec059e536499423915c1e585bd1d6e 102 SUPERFAMILY SSF51278 1 102 2.49E-46 T 10-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 SUPERFAMILY SSF53850 93 290 3.08E-21 T 10-10-2018 AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 Pfam PF03466 LysR substrate binding domain 94 276 1.0E-17 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.6E-12 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 Gene3D G3DSA:3.40.190.10 169 267 4.2E-15 T 10-10-2018 AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 SUPERFAMILY SSF46785 4 81 4.14E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 Gene3D G3DSA:3.40.190.10 94 276 4.2E-15 T 10-10-2018 AMQ28_02610 019bf92ec07b85541ec3bcc3232ab05d 296 Gene3D G3DSA:1.10.10.10 2 92 3.2E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00940 c274ce0b7961b1e1a722833cf00ad786 442 Pfam PF07690 Major Facilitator Superfamily 33 376 4.3E-52 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00940 c274ce0b7961b1e1a722833cf00ad786 442 SUPERFAMILY SSF103473 18 424 3.79E-81 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_00940 c274ce0b7961b1e1a722833cf00ad786 442 Gene3D G3DSA:1.20.1250.20 18 208 1.3E-36 T 10-10-2018 AMQ28_00940 c274ce0b7961b1e1a722833cf00ad786 442 Gene3D G3DSA:1.20.1250.20 221 427 4.3E-33 T 10-10-2018 AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 Pfam PF08274 PhnA Zinc-Ribbon 2 30 5.9E-15 T 10-10-2018 IPR013987 PhnA protein, N-terminal AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 SUPERFAMILY SSF82057 38 113 9.61E-26 T 10-10-2018 AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 Pfam PF03831 PhnA domain 43 113 4.3E-32 T 10-10-2018 IPR013988 PhnA protein, C-terminal AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 Gene3D G3DSA:2.30.30.40 41 113 2.7E-31 T 10-10-2018 AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 113 4.4E-44 T 10-10-2018 IPR004624 PhnA protein AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 Gene3D G3DSA:2.20.25.10 1 40 5.6E-17 T 10-10-2018 AMQ28_11390 3a127ff5f1fa3ba4122cd6bf167f90ea 113 SUPERFAMILY SSF57783 1 35 2.38E-13 T 10-10-2018 AMQ28_08550 77778e326d7fc1ef241eb6ea16fba1b6 398 SUPERFAMILY SSF55073 235 389 7.85E-44 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_08550 77778e326d7fc1ef241eb6ea16fba1b6 398 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 226 386 1.2E-46 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08550 77778e326d7fc1ef241eb6ea16fba1b6 398 Pfam PF00990 Diguanylate cyclase, GGDEF domain 231 384 4.5E-46 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08550 77778e326d7fc1ef241eb6ea16fba1b6 398 SMART SM00267 219 388 6.7E-58 T 10-10-2018 IPR000160 GGDEF domain AMQ28_08550 77778e326d7fc1ef241eb6ea16fba1b6 398 Gene3D G3DSA:3.30.70.270 217 390 1.5E-53 T 10-10-2018 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 10 217 5.8E-64 T 10-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 SUPERFAMILY SSF100950 7 149 5.51E-44 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 7 220 33.037 T 10-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 SUPERFAMILY SSF75445 131 201 6.8E-23 T 10-10-2018 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 Gene3D G3DSA:3.30.70.260 127 198 2.6E-73 T 10-10-2018 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 Gene3D G3DSA:3.40.50.1360 11 212 2.6E-73 T 10-10-2018 AMQ28_14175 09a122edf88c59ef0b6485f077a470d1 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 216 4.4E-59 T 10-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 Gene3D G3DSA:3.40.1190.10 2 288 1.9E-88 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 TIGRFAM TIGR01499 folC: bifunctional protein FolC 30 422 1.3E-102 T 10-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 PIRSF PIRSF001563 4 427 1.4E-108 T 10-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 SUPERFAMILY SSF53623 10 287 8.13E-84 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 Gene3D G3DSA:3.90.190.20 290 426 7.9E-28 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 Pfam PF08245 Mur ligase middle domain 52 267 2.4E-16 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_11105 2294ecb1861e7912ff229ecb1263ae22 427 SUPERFAMILY SSF53244 290 424 3.3E-25 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 Gene3D G3DSA:3.40.50.1860 114 227 1.0E-76 T 10-10-2018 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 Hamap MF_00258 Glutamate racemase [murI]. 21 279 34.343 T 10-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 TIGRFAM TIGR00067 glut_race: glutamate racemase 23 266 9.6E-68 T 10-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 87 95 - T 10-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 Pfam PF01177 Asp/Glu/Hydantoin racemase 23 235 6.2E-30 T 10-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 SUPERFAMILY SSF53681 127 270 6.05E-29 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 SUPERFAMILY SSF53681 22 125 2.49E-34 T 10-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 200 210 - T 10-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06375 5214c39e500fd0f5cec485a5378092b8 290 Gene3D G3DSA:3.40.50.1860 22 264 1.0E-76 T 10-10-2018 AMQ28_11445 a109ae8c1511df0fc507b2d488845d40 291 Pfam PF10118 Predicted metal-dependent hydrolase 17 277 3.4E-77 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_11445 a109ae8c1511df0fc507b2d488845d40 291 PIRSF PIRSF007580 2 290 1.8E-72 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_11560 8ca75cee940e410bab0c8bea67266c28 145 SUPERFAMILY SSF46785 6 134 3.99E-44 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_11560 8ca75cee940e410bab0c8bea67266c28 145 Gene3D G3DSA:3.30.1490.190 85 141 1.8E-22 T 10-10-2018 AMQ28_11560 8ca75cee940e410bab0c8bea67266c28 145 Pfam PF01475 Ferric uptake regulator family 10 130 1.4E-44 T 10-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMQ28_11560 8ca75cee940e410bab0c8bea67266c28 145 Gene3D G3DSA:1.10.10.10 2 84 1.1E-35 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_10935 d829e8beeea15704b38bd909dc5ac534 294 Pfam PF00483 Nucleotidyl transferase 6 241 2.0E-72 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMQ28_10935 d829e8beeea15704b38bd909dc5ac534 294 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 6 290 6.4E-157 T 10-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMQ28_10935 d829e8beeea15704b38bd909dc5ac534 294 SUPERFAMILY SSF53448 5 290 1.54E-91 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_10935 d829e8beeea15704b38bd909dc5ac534 294 Gene3D G3DSA:3.90.550.10 3 294 4.2E-87 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 PIRSF PIRSF000401 1 299 3.1E-82 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 297 1.7E-88 T 10-10-2018 AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 297 31.394 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 Gene3D G3DSA:3.40.50.150 103 300 1.0E-52 T 10-10-2018 AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 SUPERFAMILY SSF53335 64 291 9.62E-35 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_13780 204e425e92ad7ed5d0bef68194008721 301 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 291 1.7E-84 T 10-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 SUPERFAMILY SSF81336 103 285 2.48E-41 T 10-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 Gene3D G3DSA:1.20.120.220 102 291 3.0E-58 T 10-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 ProSitePatterns PS00449 ATP synthase a subunit signature. 227 236 - T 10-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 Pfam PF00119 ATP synthase A chain 55 285 1.2E-55 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 291 15.678 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07140 0a930bf42f4d6f82664825872219ab0c 291 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 46 286 3.2E-39 T 10-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 Gene3D G3DSA:1.10.3130.10 1 66 2.3E-23 T 10-10-2018 AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 Pfam PF06426 Serine acetyltransferase, N-terminal 3 35 3.0E-4 T 10-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 Gene3D G3DSA:2.160.10.10 67 188 2.8E-39 T 10-10-2018 AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 6.8E-76 T 10-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 6.7E-5 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 7.4E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13730 e57cee3d680d25b81ad45b4e4dca4d95 268 SUPERFAMILY SSF51161 3 173 4.16E-58 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 SMART SM00382 75 384 4.7E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Gene3D G3DSA:1.20.120.1080 509 583 1.2E-14 T 10-10-2018 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Gene3D G3DSA:1.10.10.2130 425 469 2.0E-9 T 10-10-2018 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Pfam PF04408 Helicase associated domain (HA2) 466 613 2.6E-15 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Gene3D G3DSA:3.40.50.300 8 235 1.3E-74 T 10-10-2018 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 SUPERFAMILY SSF52540 62 623 1.7E-93 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Pfam PF11898 Domain of unknown function (DUF3418) 744 1316 2.7E-145 T 10-10-2018 IPR024590 RNA helicase HrpA, C-terminal AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 SMART SM00487 58 242 1.0E-29 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 SMART SM00490 303 404 4.0E-14 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Pfam PF00270 DEAD/DEAH box helicase 64 216 6.3E-7 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Gene3D G3DSA:3.40.50.300 236 420 1.8E-49 T 10-10-2018 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 SMART SM00847 464 591 5.8E-30 T 10-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Pfam PF00271 Helicase conserved C-terminal domain 288 403 6.6E-12 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_01850 1fc80f1253cb8a13fc38e385ece12c94 1320 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 654 729 4.4E-16 T 10-10-2018 IPR011709 Domain of unknown function DUF1605 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 SMART SM00419 170 218 1.1E-13 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 SMART SM00100 9 132 4.1E-20 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 Pfam PF00325 Bacterial regulatory proteins, crp family 176 207 1.3E-14 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 7.1E-9 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 7.1E-9 T 10-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 Gene3D G3DSA:1.10.10.10 149 217 2.6E-32 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 81 99 - T 10-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 6.0E-20 T 10-10-2018 IPR000595 Cyclic nucleotide-binding domain AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 ProSitePatterns PS00042 Crp-type HTH domain signature. 178 201 - T 10-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 Gene3D G3DSA:2.60.120.10 21 148 1.7E-39 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 SUPERFAMILY SSF51206 20 147 9.82E-29 T 10-10-2018 IPR018490 Cyclic nucleotide-binding-like AMQ28_02365 abbfeb5c4fe08fce9836aa08af3e7727 235 SUPERFAMILY SSF46785 149 218 7.09E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01490 eb91cece10ea6ed1f28c3e3ae019cb7d 153 Gene3D G3DSA:2.40.128.640 36 153 7.8E-11 T 10-10-2018 AMQ28_01490 eb91cece10ea6ed1f28c3e3ae019cb7d 153 Pfam PF04170 NlpE N-terminal domain 49 134 1.0E-7 T 10-10-2018 IPR007298 Copper resistance lipoprotein NlpE AMQ28_11505 135d00f9511461fc027d422b3c962190 308 SUPERFAMILY SSF69593 87 300 1.57E-27 T 10-10-2018 AMQ28_11505 135d00f9511461fc027d422b3c962190 308 SMART SM00563 94 236 5.2E-10 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_11505 135d00f9511461fc027d422b3c962190 308 Pfam PF01553 Acyltransferase 89 234 3.9E-10 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_11755 9d82815bf35e9789546c4cbf0f92da45 359 Gene3D G3DSA:1.20.1090.10 161 359 8.6E-56 T 10-10-2018 AMQ28_11755 9d82815bf35e9789546c4cbf0f92da45 359 SUPERFAMILY SSF56796 3 355 6.93E-70 T 10-10-2018 AMQ28_11755 9d82815bf35e9789546c4cbf0f92da45 359 Gene3D G3DSA:3.40.50.1970 2 159 4.5E-38 T 10-10-2018 AMQ28_11755 9d82815bf35e9789546c4cbf0f92da45 359 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 346 3.3E-54 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMQ28_11755 9d82815bf35e9789546c4cbf0f92da45 359 PIRSF PIRSF000112 2 359 4.5E-76 T 10-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 AMQ28_00675 29173bf789d137c5ceea9a2614c75718 234 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 216 3.3E-80 T 10-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMQ28_00675 29173bf789d137c5ceea9a2614c75718 234 Gene3D G3DSA:3.40.1080.10 1 216 8.3E-97 T 10-10-2018 AMQ28_00675 29173bf789d137c5ceea9a2614c75718 234 SUPERFAMILY SSF100950 3 228 2.51E-87 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_00675 29173bf789d137c5ceea9a2614c75718 234 SMART SM00882 5 217 5.2E-91 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00675 29173bf789d137c5ceea9a2614c75718 234 Pfam PF01144 Coenzyme A transferase 6 217 1.3E-79 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Pfam PF00676 Dehydrogenase E1 component 210 515 1.7E-50 T 10-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 SMART SM00861 593 786 1.8E-55 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Gene3D G3DSA:3.40.50.11610 723 932 5.1E-162 T 10-10-2018 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Gene3D G3DSA:3.40.50.12470 556 802 5.1E-162 T 10-10-2018 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 935 0.0 T 10-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Pfam PF02779 Transketolase, pyrimidine binding domain 593 787 1.6E-60 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Gene3D G3DSA:1.10.287.1150 83 164 2.8E-25 T 10-10-2018 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 935 3.8E-51 T 10-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 PIRSF PIRSF000157 1 937 0.0 T 10-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 SUPERFAMILY SSF52518 118 547 7.07E-87 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 14 50 2.1E-13 T 10-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 Gene3D G3DSA:3.40.50.970 165 525 4.3E-146 T 10-10-2018 AMQ28_12250 5162ea7a3be4222112a08c7008740772 946 SUPERFAMILY SSF52518 576 793 9.81E-46 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 Gene3D G3DSA:3.80.30.20 3 311 1.0E-89 T 10-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 375 1.9E-112 T 10-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 SMART SM00729 10 230 5.6E-50 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 Pfam PF06969 HemN C-terminal domain 312 372 9.7E-11 T 10-10-2018 IPR010723 HemN, C-terminal AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 Pfam PF04055 Radical SAM superfamily 15 184 2.7E-20 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_10030 be2ab4721a97e6c639ca9410d1beee25 384 SUPERFAMILY SSF102114 10 384 2.49E-100 T 10-10-2018 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 Gene3D G3DSA:3.30.420.40 189 399 7.7E-69 T 10-10-2018 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PIRSF PIRSF000722 1 391 1.7E-128 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 10-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 368 380 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 313 329 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 5 16 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 291 304 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 165 178 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 PRINTS PR00471 Acetate kinase family signature 194 215 2.0E-40 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 Gene3D G3DSA:3.30.420.40 1 185 2.3E-61 T 10-10-2018 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 SUPERFAMILY SSF53067 149 387 4.67E-77 T 10-10-2018 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 Pfam PF00871 Acetokinase family 5 381 1.8E-123 T 10-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 Hamap MF_00020 Acetate kinase [ackA]. 1 390 157.722 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 SUPERFAMILY SSF53067 4 184 6.61E-58 T 10-10-2018 AMQ28_05485 549da9785488395d2ff8502436df1cac 406 TIGRFAM TIGR00016 ackA: acetate kinase 3 386 1.6E-127 T 10-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMQ28_11730 1eac3d7a66c49567e6f2903c23efea89 243 Gene3D G3DSA:3.40.50.620 9 228 4.4E-67 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_11730 1eac3d7a66c49567e6f2903c23efea89 243 SUPERFAMILY SSF52402 15 201 2.68E-47 T 10-10-2018 AMQ28_11730 1eac3d7a66c49567e6f2903c23efea89 243 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 237 9.9E-80 T 10-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 AMQ28_11730 1eac3d7a66c49567e6f2903c23efea89 243 PIRSF PIRSF000857 4 243 4.1E-78 T 10-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AMQ28_11730 1eac3d7a66c49567e6f2903c23efea89 243 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 213 3.9E-48 T 10-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMQ28_06025 bd7a9b90dd4c347898375296b6a7549c 375 Gene3D G3DSA:3.60.10.10 100 322 1.5E-21 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMQ28_06025 bd7a9b90dd4c347898375296b6a7549c 375 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 118 312 3.7E-17 T 10-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMQ28_06025 bd7a9b90dd4c347898375296b6a7549c 375 SUPERFAMILY SSF56219 100 319 6.67E-32 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMQ28_05555 de4ba538f415c8ad05cac0f1a4f06017 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 85 177 5.2E-14 T 10-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMQ28_05555 de4ba538f415c8ad05cac0f1a4f06017 227 SMART SM00702 1 178 2.2E-17 T 10-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMQ28_05555 de4ba538f415c8ad05cac0f1a4f06017 227 Gene3D G3DSA:2.60.120.620 1 179 6.8E-42 T 10-10-2018 AMQ28_05555 de4ba538f415c8ad05cac0f1a4f06017 227 Gene3D G3DSA:4.10.860.20 181 227 2.4E-20 T 10-10-2018 AMQ28_05555 de4ba538f415c8ad05cac0f1a4f06017 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 42.302 T 10-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 AMQ28_02070 e7ede9b027331691ffe5ab6f481704ff 138 Gene3D G3DSA:3.30.450.150 1 136 3.5E-34 T 10-10-2018 IPR038084 GlcG-like domain superfamily AMQ28_02070 e7ede9b027331691ffe5ab6f481704ff 138 SUPERFAMILY SSF143744 2 134 3.79E-32 T 10-10-2018 IPR038084 GlcG-like domain superfamily AMQ28_02070 e7ede9b027331691ffe5ab6f481704ff 138 Pfam PF03928 Haem-degrading 7 131 1.4E-24 T 10-10-2018 IPR005624 Haem-degrading AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 230 3.0E-26 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 SUPERFAMILY SSF56645 14 253 1.96E-86 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Gene3D G3DSA:1.20.140.10 248 390 2.1E-41 T 10-10-2018 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Gene3D G3DSA:1.10.540.10 10 132 8.6E-38 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 130 1.9E-34 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 SUPERFAMILY SSF47203 241 390 8.22E-45 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 390 1.7E-39 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_10325 e34ac56b8cdfe71973f915e17108dfc6 390 Gene3D G3DSA:2.40.110.10 133 247 1.5E-41 T 10-10-2018 AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 Pfam PF01695 IstB-like ATP binding protein 105 223 2.9E-19 T 10-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 SUPERFAMILY SSF52540 77 230 1.98E-17 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 Gene3D G3DSA:3.40.50.300 54 231 1.7E-36 T 10-10-2018 AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 135 149 1.1E-6 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 205 232 1.1E-6 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 105 125 1.1E-6 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_13090 d38a071fa547ad3b0f2b4f93697b283a 249 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 171 185 1.1E-6 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08580 7ec18ad48f033828196fa14df9dc5149 216 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 216 32.298 T 10-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_08580 7ec18ad48f033828196fa14df9dc5149 216 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 14 191 3.4E-57 T 10-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMQ28_08580 7ec18ad48f033828196fa14df9dc5149 216 Pfam PF00156 Phosphoribosyl transferase domain 48 164 3.0E-15 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMQ28_08580 7ec18ad48f033828196fa14df9dc5149 216 Gene3D G3DSA:3.40.50.2020 7 216 6.2E-74 T 10-10-2018 AMQ28_08580 7ec18ad48f033828196fa14df9dc5149 216 SUPERFAMILY SSF53271 11 199 2.62E-47 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_02310 88daefcbd392e8112213b445c0ccfb2e 224 Pfam PF13649 Methyltransferase domain 46 140 2.2E-15 T 10-10-2018 AMQ28_02310 88daefcbd392e8112213b445c0ccfb2e 224 Gene3D G3DSA:3.40.50.150 5 224 5.4E-40 T 10-10-2018 AMQ28_02310 88daefcbd392e8112213b445c0ccfb2e 224 SUPERFAMILY SSF53335 9 219 3.1E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 Gene3D G3DSA:3.30.420.40 4 256 1.2E-112 T 10-10-2018 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 453 6.6E-63 T 10-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 PIRSF PIRSF000538 6 502 1.8E-179 T 10-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 138 150 - T 10-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 10-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 255 1.2E-89 T 10-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 Gene3D G3DSA:3.30.420.40 257 502 1.3E-92 T 10-10-2018 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 SUPERFAMILY SSF53067 7 258 1.08E-97 T 10-10-2018 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 7 499 3.9E-226 T 10-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 SUPERFAMILY SSF53067 257 500 6.15E-84 T 10-10-2018 AMQ28_12320 e00afe8b39d462e998814fe2e6b74593 502 Hamap MF_00186 Glycerol kinase [glpK]. 6 500 58.646 T 10-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMQ28_07270 97d0def6c14a38727c27eac408b95d21 278 Gene3D G3DSA:3.40.50.300 1 278 1.5E-60 T 10-10-2018 AMQ28_07270 97d0def6c14a38727c27eac408b95d21 278 SUPERFAMILY SSF52540 4 277 1.25E-50 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07270 97d0def6c14a38727c27eac408b95d21 278 Pfam PF13614 AAA domain 4 205 1.2E-38 T 10-10-2018 IPR025669 AAA domain AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 SUPERFAMILY SSF109604 427 548 2.15E-14 T 10-10-2018 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 30 877 9.1E-265 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 Gene3D G3DSA:1.10.3210.10 444 583 5.4E-11 T 10-10-2018 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 Pfam PF01909 Nucleotidyltransferase domain 55 107 8.5E-5 T 10-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 888 282.243 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 SUPERFAMILY SSF55021 809 858 1.5E-8 T 10-10-2018 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 Pfam PF01966 HD domain 482 586 1.1E-9 T 10-10-2018 IPR006674 HD domain AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 Pfam PF08335 GlnD PII-uridylyltransferase 175 317 1.8E-36 T 10-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 SMART SM00471 453 600 4.1E-6 T 10-10-2018 IPR003607 HD/PDEase domain AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 PIRSF PIRSF006288 9 884 0.0 T 10-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 SUPERFAMILY SSF81301 38 166 1.93E-15 T 10-10-2018 AMQ28_13350 690e02603d8731d872f8da166e4c3a26 888 SUPERFAMILY SSF81593 194 311 1.96E-8 T 10-10-2018 AMQ28_07245 d3b3be183b3b628af102fad34b11ec0e 122 SUPERFAMILY SSF101756 34 119 2.75E-21 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily AMQ28_07245 d3b3be183b3b628af102fad34b11ec0e 122 Gene3D G3DSA:2.40.50.200 19 122 1.6E-23 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily AMQ28_07245 d3b3be183b3b628af102fad34b11ec0e 122 Pfam PF04076 Bacterial OB fold (BOF) protein 33 119 1.4E-17 T 10-10-2018 IPR005220 Bacterial OB-fold AMQ28_14205 9a99d5faa2d0e1afa68ac90332010297 117 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 9 113 21.942 T 10-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMQ28_14205 9a99d5faa2d0e1afa68ac90332010297 117 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 8 112 4.0E-33 T 10-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 SUPERFAMILY SSF50447 10 98 2.9E-22 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 Gene3D G3DSA:2.30.30.240 99 182 6.7E-32 T 10-10-2018 AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 Gene3D G3DSA:2.40.30.60 1 98 1.6E-36 T 10-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 Pfam PF01782 RimM N-terminal domain 13 95 9.2E-23 T 10-10-2018 IPR002676 RimM, N-terminal GO:0006364 AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 182 21.945 T 10-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 Pfam PF05239 PRC-barrel domain 101 177 9.1E-8 T 10-10-2018 IPR027275 PRC-barrel domain AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 SUPERFAMILY SSF50346 104 179 7.85E-18 T 10-10-2018 IPR011033 PRC-barrel-like superfamily AMQ28_09885 c9973b003bfda38c336719d972aca6a6 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 12 179 2.4E-44 T 10-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 SUPERFAMILY SSF47203 226 375 1.5E-58 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Gene3D G3DSA:1.10.540.10 1 118 2.0E-45 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Gene3D G3DSA:1.20.140.10 233 375 1.5E-57 T 10-10-2018 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 7.5E-52 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.3E-25 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 3.0E-37 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 SUPERFAMILY SSF56645 2 240 1.31E-82 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 Gene3D G3DSA:2.40.110.10 119 232 7.9E-41 T 10-10-2018 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 PIRSF PIRSF016578 1 110 2.6E-8 T 10-10-2018 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 PIRSF PIRSF016578 235 371 7.3E-13 T 10-10-2018 AMQ28_00730 4e8c7968895cfa4ce7e3ed770a23725a 375 PIRSF PIRSF016578 113 217 0.0052 T 10-10-2018 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 PRINTS PR00811 Bacterial general secretion pathway protein D signature 462 472 1.9E-19 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 PRINTS PR00811 Bacterial general secretion pathway protein D signature 554 578 1.9E-19 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 PRINTS PR00811 Bacterial general secretion pathway protein D signature 681 699 1.9E-19 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 PRINTS PR00811 Bacterial general secretion pathway protein D signature 704 718 1.9E-19 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Pfam PF03958 Bacterial type II/III secretion system short domain 377 462 3.3E-13 T 10-10-2018 IPR005644 NolW-like AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 278 717 1.1E-163 T 10-10-2018 IPR013355 Type IV pilus secretin PilQ AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Pfam PF07660 Secretin and TonB N terminus short domain 307 350 2.1E-8 T 10-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Gene3D G3DSA:3.30.1370.120 350 463 3.2E-24 T 10-10-2018 IPR038591 NolW-like superfamily AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 662 695 - T 10-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Pfam PF00263 Bacterial type II and III secretion system protein 558 716 2.4E-49 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Pfam PF11741 AMIN domain 53 126 1.2E-6 T 10-10-2018 IPR021731 AMIN domain AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 SMART SM00965 303 351 9.6E-10 T 10-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Gene3D G3DSA:3.55.50.30 277 345 2.9E-9 T 10-10-2018 AMQ28_09740 98e3b05578bc7ea574feb3645ad68fa3 724 Gene3D G3DSA:2.60.40.3470 140 264 6.9E-29 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 219 235 - T 10-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Gene3D G3DSA:3.40.50.720 204 368 1.1E-67 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 SMART SM00997 197 372 1.3E-83 T 10-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 82 96 - T 10-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 SUPERFAMILY SSF51735 197 373 1.0E-52 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 197 372 6.8E-58 T 10-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Gene3D G3DSA:3.40.50.1480 1 148 1.6E-70 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 SMART SM00996 10 459 1.3E-273 T 10-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 SUPERFAMILY SSF52283 8 460 5.5E-108 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 6 452 45.04 T 10-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Gene3D G3DSA:3.40.50.1480 149 203 2.6E-19 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Gene3D G3DSA:3.40.50.1480 369 460 4.9E-29 T 10-10-2018 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 PIRSF PIRSF001109 1 460 7.3E-179 T 10-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 11 452 4.3E-156 T 10-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_03405 11349d4341455ca3a41df2ade9fa8076 460 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 10 147 3.1E-73 T 10-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMQ28_09020 b0ed711fee95db639991f915f779e2d7 279 PIRSF PIRSF037442 1 278 9.8E-79 T 10-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 AMQ28_09020 b0ed711fee95db639991f915f779e2d7 279 Gene3D G3DSA:3.40.50.1820 1 277 3.8E-27 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09020 b0ed711fee95db639991f915f779e2d7 279 SUPERFAMILY SSF53474 4 270 3.62E-30 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09020 b0ed711fee95db639991f915f779e2d7 279 Pfam PF12697 Alpha/beta hydrolase family 32 260 6.4E-10 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 Gene3D G3DSA:1.20.1220.12 579 720 5.2E-67 T 10-10-2018 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 Gene3D G3DSA:2.170.170.11 132 261 5.9E-260 T 10-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 Gene3D G3DSA:3.20.20.360 10 578 5.9E-260 T 10-10-2018 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 715 0.0 T 10-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 Pfam PF01274 Malate synthase 17 691 9.3E-156 T 10-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 Hamap MF_00641 Malate synthase G [glcB]. 1 720 369.036 T 10-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMQ28_01615 37ba79854dc31b300f1359625af8c11e 720 SUPERFAMILY SSF51645 3 716 2.09E-287 T 10-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 12 406 7.6E-123 T 10-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 Gene3D G3DSA:3.10.20.340 277 406 9.6E-44 T 10-10-2018 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 SUPERFAMILY SSF56266 14 403 2.22E-139 T 10-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 Gene3D G3DSA:3.60.70.12 7 276 4.6E-88 T 10-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 Pfam PF01960 ArgJ family 20 406 6.6E-141 T 10-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 406 152.773 T 10-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMQ28_11140 4e53a0a981049978a44cb2b4e73e3719 406 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 31 404 5.0E-176 T 10-10-2018 AMQ28_10990 9cda5dc922417aa394a2e609169a8659 487 SUPERFAMILY SSF56024 75 265 5.16E-15 T 10-10-2018 AMQ28_10990 9cda5dc922417aa394a2e609169a8659 487 Pfam PF13091 PLD-like domain 313 450 7.0E-24 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_10990 9cda5dc922417aa394a2e609169a8659 487 Gene3D G3DSA:3.30.870.10 282 454 1.5E-26 T 10-10-2018 AMQ28_10990 9cda5dc922417aa394a2e609169a8659 487 SUPERFAMILY SSF56024 303 450 6.87E-19 T 10-10-2018 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 SUPERFAMILY SSF51735 1 170 1.73E-8 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 Gene3D G3DSA:3.40.50.720 215 418 1.4E-60 T 10-10-2018 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 PIRSF PIRSF000124 1 418 1.5E-111 T 10-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 SUPERFAMILY SSF52413 284 413 8.37E-31 T 10-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 SUPERFAMILY SSF48179 184 280 4.93E-23 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 PIRSF PIRSF500134 1 418 1.6E-110 T 10-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 SMART SM00984 299 403 1.5E-33 T 10-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 299 403 2.0E-23 T 10-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 Gene3D G3DSA:1.20.5.100 186 213 3.6E-10 T 10-10-2018 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 399 1.5E-56 T 10-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 185 275 8.3E-24 T 10-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07690 bc5beb9587a5a9c9e821b57d480d1a0a 418 Gene3D G3DSA:3.40.50.720 1 185 5.2E-12 T 10-10-2018 AMQ28_03695 1f7e4400dec583fb69a5bc2967e24af3 587 Pfam PF09423 PhoD-like phosphatase 148 550 3.2E-123 T 10-10-2018 IPR018946 Alkaline phosphatase D-related AMQ28_03695 1f7e4400dec583fb69a5bc2967e24af3 587 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 49 138 2.7E-32 T 10-10-2018 IPR032093 Phospholipase D, N-terminal AMQ28_03695 1f7e4400dec583fb69a5bc2967e24af3 587 Gene3D G3DSA:2.60.40.380 41 140 1.8E-35 T 10-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 AMQ28_03695 1f7e4400dec583fb69a5bc2967e24af3 587 SUPERFAMILY SSF56300 140 554 6.11E-34 T 10-10-2018 AMQ28_11290 3b7b3f72b73fb58f724b7af3030db6d7 336 SUPERFAMILY SSF56300 115 335 3.51E-28 T 10-10-2018 AMQ28_11290 3b7b3f72b73fb58f724b7af3030db6d7 336 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 116 277 8.1E-11 T 10-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMQ28_11290 3b7b3f72b73fb58f724b7af3030db6d7 336 Gene3D G3DSA:3.60.21.10 114 313 1.7E-18 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like AMQ28_10900 7a8105f63a81d3ccfb29bf7484d45e01 308 Pfam PF01063 Amino-transferase class IV 36 268 6.5E-54 T 10-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMQ28_10900 7a8105f63a81d3ccfb29bf7484d45e01 308 SUPERFAMILY SSF56752 2 304 3.4E-102 T 10-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMQ28_10900 7a8105f63a81d3ccfb29bf7484d45e01 308 Gene3D G3DSA:3.30.470.10 7 132 3.7E-39 T 10-10-2018 AMQ28_10900 7a8105f63a81d3ccfb29bf7484d45e01 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 7.1E-129 T 10-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 AMQ28_10900 7a8105f63a81d3ccfb29bf7484d45e01 308 Gene3D G3DSA:3.20.10.10 133 296 7.6E-53 T 10-10-2018 AMQ28_03065 484e65636287a25cba80ab3867e93c64 266 Gene3D G3DSA:1.10.12.10 210 255 1.0E-25 T 10-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMQ28_03065 484e65636287a25cba80ab3867e93c64 266 SUPERFAMILY SSF52096 9 264 1.17E-60 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_03065 484e65636287a25cba80ab3867e93c64 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 264 3.8E-37 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_03065 484e65636287a25cba80ab3867e93c64 266 Gene3D G3DSA:3.90.226.10 10 191 1.5E-53 T 10-10-2018 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 SUPERFAMILY SSF56014 264 352 1.32E-13 T 10-10-2018 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 Gene3D G3DSA:3.20.20.20 1 260 4.0E-102 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 364 34.053 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 351 4.8E-128 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 Pfam PF04551 GcpE protein 11 352 1.0E-131 T 10-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 SUPERFAMILY SSF51717 15 207 1.49E-8 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 PIRSF PIRSF004640 1 363 6.7E-144 T 10-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMQ28_05760 b903ad4876e70ef81942400add332c36 371 Gene3D G3DSA:3.30.413.10 261 360 1.4E-27 T 10-10-2018 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 Gene3D G3DSA:1.10.150.80 295 369 1.0E-10 T 10-10-2018 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 SMART SM00474 2 169 8.7E-19 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 SMART SM00341 207 287 0.0028 T 10-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 SUPERFAMILY SSF47819 197 279 7.1E-18 T 10-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 Pfam PF01612 3'-5' exonuclease 3 168 3.9E-21 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 SUPERFAMILY SSF53098 3 206 5.92E-46 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 Gene3D G3DSA:1.10.150.80 200 288 2.5E-13 T 10-10-2018 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 SUPERFAMILY SSF47819 293 366 3.01E-16 T 10-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 Pfam PF00570 HRDC domain 210 276 2.4E-14 T 10-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMQ28_00080 a3628e73f440ab326623afd36b16d1b2 380 Gene3D G3DSA:3.30.420.10 1 189 5.5E-46 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 SUPERFAMILY SSF52016 407 594 4.24E-60 T 10-10-2018 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 Gene3D G3DSA:3.50.30.80 407 559 7.8E-55 T 10-10-2018 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 SUPERFAMILY SSF143975 2 406 1.96E-133 T 10-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 Pfam PF00920 Dehydratase family 20 591 2.4E-222 T 10-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 495 506 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 594 43.266 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07910 505493fa3d02f6f8559055e4db02d8a8 595 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 4 594 1.5E-253 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_11570 209a353dfe0e799718851f7683010e42 345 SMART SM00382 122 247 0.0017 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_11570 209a353dfe0e799718851f7683010e42 345 Pfam PF00437 Type II/IV secretion system protein 11 269 1.3E-46 T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_11570 209a353dfe0e799718851f7683010e42 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_11570 209a353dfe0e799718851f7683010e42 345 Gene3D G3DSA:3.30.450.90 1 100 6.0E-37 T 10-10-2018 AMQ28_11570 209a353dfe0e799718851f7683010e42 345 SUPERFAMILY SSF52540 5 334 6.53E-72 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11570 209a353dfe0e799718851f7683010e42 345 Gene3D G3DSA:3.40.50.300 101 345 3.2E-106 T 10-10-2018 AMQ28_11570 209a353dfe0e799718851f7683010e42 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 1.3E-154 T 10-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 AMQ28_00395 29005ff15917c55e1eb03571fc0dd838 334 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 4 322 9.8E-97 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_00395 29005ff15917c55e1eb03571fc0dd838 334 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 4 210 7.2E-46 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_00395 29005ff15917c55e1eb03571fc0dd838 334 PIRSF PIRSF000267 1 334 5.8E-90 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 Pfam PF00290 Tryptophan synthase alpha chain 8 254 3.0E-86 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 254 8.2E-77 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 10-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 SUPERFAMILY SSF51366 1 247 5.37E-90 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 Gene3D G3DSA:3.20.20.70 1 267 1.3E-98 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_11095 cf592800991816a63ee696467eddd0c3 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 34.681 T 10-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 51 531 38.909 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 Gene3D G3DSA:1.10.1390.10 514 557 1.7E-16 T 10-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 SUPERFAMILY SSF53697 19 554 7.51E-175 T 10-10-2018 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 Gene3D G3DSA:3.40.50.10490 103 298 6.5E-202 T 10-10-2018 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 472 490 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 268 286 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 504 517 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 490 504 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 152 171 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 PRINTS PR00662 Glucose-6-phosphate isomerase signature 345 366 4.4E-51 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 Pfam PF00342 Phosphoglucose isomerase 57 549 6.8E-171 T 10-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 504 521 - T 10-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 272 285 - T 10-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMQ28_07685 8d7ec03bcb9a6dd3eaf47431a457000c 558 Gene3D G3DSA:3.40.50.10490 20 513 6.5E-202 T 10-10-2018 AMQ28_02055 b1e09062fc6471ef9aeb7f8fa5ead76d 105 Pfam PF01527 Transposase 4 85 1.5E-6 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_02055 b1e09062fc6471ef9aeb7f8fa5ead76d 105 SUPERFAMILY SSF46689 1 97 1.97E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_02055 b1e09062fc6471ef9aeb7f8fa5ead76d 105 Gene3D G3DSA:1.10.10.10 1 59 6.0E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_09580 b1e09062fc6471ef9aeb7f8fa5ead76d 105 Pfam PF01527 Transposase 4 85 1.5E-6 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_09580 b1e09062fc6471ef9aeb7f8fa5ead76d 105 SUPERFAMILY SSF46689 1 97 1.97E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09580 b1e09062fc6471ef9aeb7f8fa5ead76d 105 Gene3D G3DSA:1.10.10.10 1 59 6.0E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 PIRSF PIRSF002070 1 158 1.8E-34 T 10-10-2018 AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 SUPERFAMILY SSF50249 1 187 4.46E-50 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 Pfam PF00436 Single-strand binding protein family 1 105 3.5E-38 T 10-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 187 7.5E-49 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 Gene3D G3DSA:2.40.50.140 1 122 5.7E-43 T 10-10-2018 AMQ28_09030 62239558ce76d3d8eb59f104167df259 187 Hamap MF_00984 Single-stranded DNA-binding protein. 1 109 34.219 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMQ28_06110 fde37c60ddcbd53b9e190d391496fdd5 81 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 3.3E-27 T 10-10-2018 IPR021250 Protein of unknown function DUF2789 AMQ28_06110 fde37c60ddcbd53b9e190d391496fdd5 81 Gene3D G3DSA:1.10.10.1130 1 79 5.2E-27 T 10-10-2018 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 Pfam PF04444 Catechol dioxygenase N terminus 23 92 2.5E-21 T 10-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 SUPERFAMILY SSF49482 15 293 2.75E-81 T 10-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 Gene3D G3DSA:2.60.130.10 1 306 1.2E-117 T 10-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 133 161 - T 10-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 2 287 6.5E-144 T 10-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 AMQ28_00975 a914db0948e35fb052165074a0c59106 306 Pfam PF00775 Dioxygenase 101 288 2.0E-58 T 10-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMQ28_05205 641dc97a4ea406b86a78dcbae1e3ecd1 274 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 10-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AMQ28_05205 641dc97a4ea406b86a78dcbae1e3ecd1 274 Pfam PF00795 Carbon-nitrogen hydrolase 4 256 2.2E-44 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMQ28_05205 641dc97a4ea406b86a78dcbae1e3ecd1 274 SUPERFAMILY SSF56317 4 269 1.7E-64 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_05205 641dc97a4ea406b86a78dcbae1e3ecd1 274 Gene3D G3DSA:3.60.110.10 1 274 3.2E-79 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 Pfam PF11967 Recombination protein O N terminal 2 68 3.8E-9 T 10-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 SUPERFAMILY SSF50249 2 68 3.26E-6 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 TIGRFAM TIGR00613 reco: DNA repair protein RecO 8 227 1.6E-15 T 10-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 Gene3D G3DSA:1.20.1440.120 73 236 5.2E-44 T 10-10-2018 AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 Gene3D G3DSA:2.40.50.140 3 68 1.3E-10 T 10-10-2018 AMQ28_02920 dd4e94b2568328e73420d0f6fe60ead2 236 Pfam PF02565 Recombination protein O C terminal 76 226 1.4E-18 T 10-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMQ28_04005 c0487272e76e94706b718ee22d841926 334 Gene3D G3DSA:3.40.50.300 7 203 8.7E-46 T 10-10-2018 AMQ28_04005 c0487272e76e94706b718ee22d841926 334 SUPERFAMILY SSF52540 10 180 2.07E-22 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04005 c0487272e76e94706b718ee22d841926 334 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 11 174 4.4E-42 T 10-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-16 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-16 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-16 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 10-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 SUPERFAMILY SSF54999 5 101 1.96E-36 T 10-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-44 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 SMART SM01403 7 101 1.4E-54 T 10-10-2018 IPR027486 Ribosomal protein S10 domain AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.3E-35 T 10-10-2018 IPR027486 Ribosomal protein S10 domain AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.156 T 10-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10180 3f99a10d4b2410103bb2630cdb18871d 103 Gene3D G3DSA:3.30.70.600 1 103 1.2E-36 T 10-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMQ28_08435 4499a3c12f92f3bdde1c4a26cd378a85 159 Gene3D G3DSA:3.30.1050.10 27 137 6.7E-7 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMQ28_08435 4499a3c12f92f3bdde1c4a26cd378a85 159 Pfam PF02036 SCP-2 sterol transfer family 44 131 1.9E-5 T 10-10-2018 IPR003033 SCP2 sterol-binding domain AMQ28_02980 1e3310d3ea56b31e106506176aef9041 349 Pfam PF02618 YceG-like family 55 338 2.5E-76 T 10-10-2018 IPR003770 Endolytic murein transglycosylase AMQ28_02980 1e3310d3ea56b31e106506176aef9041 349 Gene3D G3DSA:3.30.160.60 313 349 1.0E-16 T 10-10-2018 AMQ28_02980 1e3310d3ea56b31e106506176aef9041 349 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 23 347 1.0E-84 T 10-10-2018 IPR003770 Endolytic murein transglycosylase AMQ28_02980 1e3310d3ea56b31e106506176aef9041 349 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 23 348 31.467 T 10-10-2018 IPR003770 Endolytic murein transglycosylase AMQ28_00475 c5af5ec6c6b56d0a02426b0ecfbd253f 124 SUPERFAMILY SSF51230 3 122 4.24E-44 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_00475 c5af5ec6c6b56d0a02426b0ecfbd253f 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 36.481 T 10-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMQ28_00475 c5af5ec6c6b56d0a02426b0ecfbd253f 124 Pfam PF01597 Glycine cleavage H-protein 7 122 1.7E-44 T 10-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate AMQ28_00475 c5af5ec6c6b56d0a02426b0ecfbd253f 124 Gene3D G3DSA:2.40.50.100 1 124 5.6E-48 T 10-10-2018 AMQ28_00475 c5af5ec6c6b56d0a02426b0ecfbd253f 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 122 3.5E-49 T 10-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:1.20.1060.10 540 653 1.1E-38 T 10-10-2018 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Pfam PF00476 DNA polymerase family A 549 919 3.3E-152 T 10-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SUPERFAMILY SSF53098 330 514 1.63E-53 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:3.30.420.10 324 538 1.3E-69 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 260 1.0E-27 T 10-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:1.10.150.20 169 241 1.3E-92 T 10-10-2018 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SMART SM00279 168 203 4.5E-14 T 10-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Pfam PF01612 3'-5' exonuclease 327 513 4.0E-35 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:3.40.50.1010 5 272 1.3E-92 T 10-10-2018 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 ProSitePatterns PS00447 DNA polymerase family A signature. 749 768 - T 10-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SUPERFAMILY SSF47807 166 280 8.82E-33 T 10-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SUPERFAMILY SSF88723 1 165 1.07E-52 T 10-10-2018 IPR029060 PIN-like domain superfamily AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SMART SM00482 681 885 4.0E-105 T 10-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 TIGRFAM TIGR00593 pola: DNA polymerase I 5 921 2.4E-297 T 10-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:1.10.150.20 704 847 7.8E-110 T 10-10-2018 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SUPERFAMILY SSF56672 522 921 6.34E-152 T 10-10-2018 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SMART SM00475 1 256 1.5E-115 T 10-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 165 3.6E-51 T 10-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 SMART SM00474 327 514 4.0E-36 T 10-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 868 881 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 725 738 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 749 774 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 695 718 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 786 797 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 840 856 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 650 672 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 673 688 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 808 819 6.6E-77 T 10-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_05235 46fe70f6a0260301d95bec40f21dfe61 921 Gene3D G3DSA:3.30.70.370 659 917 7.8E-110 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 497 521 1.2E-6 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 377 399 1.2E-6 T 10-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 Gene3D G3DSA:3.20.20.70 3 369 3.3E-121 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 Gene3D G3DSA:3.40.50.720 376 667 2.1E-115 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 SUPERFAMILY SSF51905 464 652 5.03E-23 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 SUPERFAMILY SSF51395 4 361 1.55E-107 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 461 479 4.0E-19 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 620 636 4.0E-19 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 4.0E-19 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 501 519 4.0E-19 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 1.8E-86 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 Gene3D G3DSA:3.50.50.60 473 627 2.1E-115 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 SUPERFAMILY SSF51971 334 524 2.0E-39 T 10-10-2018 AMQ28_01110 3165ec1e39be5406e972391d1976cd42 674 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 642 1.5E-28 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 32.877 T 10-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 Gene3D G3DSA:3.30.360.10 135 350 2.7E-139 T 10-10-2018 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 SMART SM00859 2 122 2.0E-27 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 353 5.0E-56 T 10-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 367 3.5E-190 T 10-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 PIRSF PIRSF000148 1 371 9.3E-67 T 10-10-2018 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 Gene3D G3DSA:3.40.50.720 3 356 2.7E-139 T 10-10-2018 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 SUPERFAMILY SSF55347 134 354 2.38E-75 T 10-10-2018 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 121 6.5E-23 T 10-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 10-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMQ28_06030 d0f2fede2c319dd9c7e4d8585db326a3 372 SUPERFAMILY SSF51735 1 147 2.51E-53 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 SUPERFAMILY SSF47616 145 232 6.68E-9 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 Pfam PF13410 Glutathione S-transferase, C-terminal domain 156 214 7.2E-6 T 10-10-2018 AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 1.5E-15 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 SUPERFAMILY SSF52833 1 96 1.42E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 Gene3D G3DSA:1.20.1050.10 132 239 6.9E-9 T 10-10-2018 AMQ28_13390 bb6fa7b087c4e1849062758d3daa3759 254 Gene3D G3DSA:3.40.30.10 3 80 4.9E-13 T 10-10-2018 AMQ28_11490 2de2af2fcb5b1979b6928e9f9e75f949 270 Pfam PF13614 AAA domain 3 168 9.3E-22 T 10-10-2018 IPR025669 AAA domain AMQ28_11490 2de2af2fcb5b1979b6928e9f9e75f949 270 Gene3D G3DSA:3.40.50.300 1 259 1.8E-70 T 10-10-2018 AMQ28_11490 2de2af2fcb5b1979b6928e9f9e75f949 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 6.4E-106 T 10-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AMQ28_11490 2de2af2fcb5b1979b6928e9f9e75f949 270 SUPERFAMILY SSF52540 2 268 6.81E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11490 2de2af2fcb5b1979b6928e9f9e75f949 270 PIRSF PIRSF003092 1 270 1.2E-88 T 10-10-2018 IPR025501 ATP binding protein MinD AMQ28_04045 67cf98392cc1dabfa8f5a427b3e4fb0b 402 Gene3D G3DSA:1.20.1720.10 14 394 3.3E-103 T 10-10-2018 AMQ28_04045 67cf98392cc1dabfa8f5a427b3e4fb0b 402 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 11 392 2.3E-88 T 10-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMQ28_04045 67cf98392cc1dabfa8f5a427b3e4fb0b 402 SUPERFAMILY SSF103473 7 392 4.45E-58 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04045 67cf98392cc1dabfa8f5a427b3e4fb0b 402 Pfam PF07690 Major Facilitator Superfamily 19 361 7.2E-45 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 Pfam PF00406 Adenylate kinase 5 185 2.5E-52 T 10-10-2018 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 TIGRFAM TIGR01351 adk: adenylate kinase 2 211 8.2E-71 T 10-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 Hamap MF_00235 Adenylate kinase [adk]. 1 216 49.775 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 PRINTS PR00094 Adenylate kinase signature 32 46 2.6E-30 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 PRINTS PR00094 Adenylate kinase signature 156 171 2.6E-30 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 PRINTS PR00094 Adenylate kinase signature 4 17 2.6E-30 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 PRINTS PR00094 Adenylate kinase signature 173 187 2.6E-30 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 PRINTS PR00094 Adenylate kinase signature 81 97 2.6E-30 T 10-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.8E-16 T 10-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 10-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 Gene3D G3DSA:3.40.50.300 1 219 2.3E-77 T 10-10-2018 AMQ28_12405 277786e59d3c945d4ac56e04c99a54cb 219 SUPERFAMILY SSF52540 1 190 9.25E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 SUPERFAMILY SSF52518 7 322 5.63E-120 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 ProSitePatterns PS00802 Transketolase signature 2. 469 485 - T 10-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 SUPERFAMILY SSF52518 337 526 2.99E-67 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Pfam PF02779 Transketolase, pyrimidine binding domain 356 525 4.6E-47 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 SUPERFAMILY SSF52922 534 661 8.57E-38 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 336 1.4E-163 T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 SMART SM00861 357 527 4.3E-70 T 10-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Pfam PF02780 Transketolase, C-terminal domain 551 653 3.4E-11 T 10-10-2018 IPR033248 Transketolase, C-terminal domain AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Gene3D G3DSA:3.40.50.920 540 661 8.9E-37 T 10-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 661 5.9E-294 T 10-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Gene3D G3DSA:3.40.50.970 6 328 2.0E-130 T 10-10-2018 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 10-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMQ28_13490 6c49c564cf1ec4981b58a03fd36c75c3 662 Gene3D G3DSA:3.40.50.970 329 539 2.0E-83 T 10-10-2018 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 Gene3D G3DSA:3.40.50.2000 14 356 1.5E-111 T 10-10-2018 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 195 356 8.5E-39 T 10-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 SUPERFAMILY SSF53756 10 363 9.42E-116 T 10-10-2018 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 12 365 34.681 T 10-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 Gene3D G3DSA:3.40.50.2000 169 350 1.5E-111 T 10-10-2018 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 7 362 2.8E-107 T 10-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_08610 378573720f765cc6177e701f71bf45fb 365 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 12 148 1.4E-44 T 10-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_10010 16a429bd31395771603a4042098758d3 84 SUPERFAMILY SSF143800 1 80 1.61E-22 T 10-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10010 16a429bd31395771603a4042098758d3 84 Gene3D G3DSA:2.30.170.50 1 82 9.9E-23 T 10-10-2018 AMQ28_10010 16a429bd31395771603a4042098758d3 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 2.2E-15 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.2E-15 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 2.2E-15 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 Pfam PF01197 Ribosomal protein L31 1 77 1.2E-25 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 25.704 T 10-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 5.6E-17 T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10010 16a429bd31395771603a4042098758d3 84 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 10-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11085 23ae6438d34e56f17927c0a8fb958fcd 292 SUPERFAMILY SSF47240 60 184 3.36E-6 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_11085 23ae6438d34e56f17927c0a8fb958fcd 292 Pfam PF10118 Predicted metal-dependent hydrolase 16 260 2.2E-72 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_11085 23ae6438d34e56f17927c0a8fb958fcd 292 PIRSF PIRSF007580 2 278 4.0E-64 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 Pfam PF02152 Dihydroneopterin aldolase 4 113 1.8E-27 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 TIGRFAM TIGR00526 folB_dom: FolB domain 1 118 5.1E-26 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 114 3.9E-25 T 10-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 SMART SM00905 4 115 6.3E-33 T 10-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 SUPERFAMILY SSF55620 1 117 6.12E-29 T 10-10-2018 AMQ28_01280 013a0bf8ed2f2053af8ec54f2eed6e86 126 Gene3D G3DSA:3.30.1130.10 1 119 1.2E-31 T 10-10-2018 AMQ28_10505 9160db35a3d1cc185aca3e5e9e309f30 285 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 283 1.8E-68 T 10-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMQ28_10505 9160db35a3d1cc185aca3e5e9e309f30 285 Gene3D G3DSA:3.40.50.150 1 285 3.1E-96 T 10-10-2018 AMQ28_10505 9160db35a3d1cc185aca3e5e9e309f30 285 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 270 38.597 T 10-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMQ28_10505 9160db35a3d1cc185aca3e5e9e309f30 285 SUPERFAMILY SSF53335 8 276 6.65E-80 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_04120 e7da5895f815b0cefb53d0086ac0b081 127 Pfam PF04304 Protein of unknown function (DUF454) 5 117 4.9E-34 T 10-10-2018 IPR007401 Protein of unknown function DUF454 AMQ28_04120 e7da5895f815b0cefb53d0086ac0b081 127 PIRSF PIRSF016789 1 122 4.7E-26 T 10-10-2018 IPR007401 Protein of unknown function DUF454 AMQ28_12580 53bcca908a7e8e60b24b54870cc0f1eb 612 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 512 8.2E-65 T 10-10-2018 IPR000914 Solute-binding protein family 5 domain AMQ28_12580 53bcca908a7e8e60b24b54870cc0f1eb 612 Gene3D G3DSA:3.40.190.10 32 596 1.1E-217 T 10-10-2018 AMQ28_12580 53bcca908a7e8e60b24b54870cc0f1eb 612 SUPERFAMILY SSF53850 53 598 1.09E-105 T 10-10-2018 AMQ28_12580 53bcca908a7e8e60b24b54870cc0f1eb 612 PIRSF PIRSF002741 12 601 8.4E-91 T 10-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMQ28_12580 53bcca908a7e8e60b24b54870cc0f1eb 612 Gene3D G3DSA:3.10.105.10 315 576 1.1E-217 T 10-10-2018 AMQ28_12850 974a90df5d91349a79cf9ae9ea9ab5e8 408 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 10-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMQ28_12850 974a90df5d91349a79cf9ae9ea9ab5e8 408 Gene3D G3DSA:3.90.1150.10 27 387 4.0E-133 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_12850 974a90df5d91349a79cf9ae9ea9ab5e8 408 Gene3D G3DSA:3.40.640.10 64 286 4.0E-133 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_12850 974a90df5d91349a79cf9ae9ea9ab5e8 408 Pfam PF00155 Aminotransferase class I and II 32 385 8.5E-73 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_12850 974a90df5d91349a79cf9ae9ea9ab5e8 408 SUPERFAMILY SSF53383 4 392 1.77E-115 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_04430 9e262199a58f08bad849e80010fbcfeb 151 Gene3D G3DSA:1.20.1260.50 1 150 9.0E-51 T 10-10-2018 AMQ28_11220 798b543f175dcaad7ab95184a84edc94 143 SUPERFAMILY SSF101738 7 117 1.57E-47 T 10-10-2018 IPR036760 SspB-like superfamily AMQ28_11220 798b543f175dcaad7ab95184a84edc94 143 Gene3D G3DSA:2.30.30.220 4 132 8.6E-51 T 10-10-2018 IPR036760 SspB-like superfamily AMQ28_11220 798b543f175dcaad7ab95184a84edc94 143 Pfam PF04386 Stringent starvation protein B 11 133 8.5E-35 T 10-10-2018 IPR007481 Stringent starvation protein B AMQ28_11220 798b543f175dcaad7ab95184a84edc94 143 PIRSF PIRSF005276 5 143 8.1E-52 T 10-10-2018 IPR007481 Stringent starvation protein B AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 Gene3D G3DSA:3.40.250.10 7 142 6.9E-31 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 Gene3D G3DSA:3.40.250.10 151 275 6.1E-27 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 SMART SM00450 154 273 1.1E-16 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 SMART SM00450 12 127 1.6E-17 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 SUPERFAMILY SSF52821 153 279 2.1E-27 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 SUPERFAMILY SSF52821 4 131 6.94E-30 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 Pfam PF00581 Rhodanese-like domain 14 122 3.2E-15 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_08450 1083e82bf0c0f4bfbaaf870f88e2641a 282 Pfam PF00581 Rhodanese-like domain 158 268 4.3E-16 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 10-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 SUPERFAMILY SSF51569 22 330 6.78E-98 T 10-10-2018 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 10-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 Gene3D G3DSA:3.30.160.270 377 549 2.9E-53 T 10-10-2018 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 SUPERFAMILY SSF110921 449 549 4.71E-30 T 10-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 Pfam PF00682 HMGL-like 33 312 3.5E-76 T 10-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 549 5.1E-26 T 10-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 550 1.6E-228 T 10-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 SUPERFAMILY SSF89000 388 437 6.28E-15 T 10-10-2018 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 7 551 52.188 T 10-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 Gene3D G3DSA:3.20.20.70 10 376 1.9E-151 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_05565 7410728cfad109e704a545bcffb229f6 565 SMART SM00917 422 550 7.6E-30 T 10-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 Gene3D G3DSA:1.10.1200.80 249 320 1.1E-13 T 10-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 PIRSF PIRSF006621 2 324 7.9E-101 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 Pfam PF01207 Dihydrouridine synthase (Dus) 12 312 9.5E-98 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 SUPERFAMILY SSF51395 8 316 1.17E-88 T 10-10-2018 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 Gene3D G3DSA:3.20.20.70 5 247 7.0E-76 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 4 319 45.514 T 10-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 AMQ28_01915 4528e4422ae1b201b2d40b905f6af5d1 338 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 8 317 5.7E-115 T 10-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 SUPERFAMILY SSF50249 584 685 6.61E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 4 533 7.8E-170 T 10-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 248 259 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 382 393 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 4.2E-24 T 10-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Pfam PF01588 Putative tRNA binding domain 591 684 5.5E-24 T 10-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 SUPERFAMILY SSF47323 388 546 1.87E-39 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 SUPERFAMILY SSF52374 3 385 8.7E-99 T 10-10-2018 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 560 685 4.3E-40 T 10-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 SUPERFAMILY SSF57770 138 172 9.03E-12 T 10-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Gene3D G3DSA:2.40.50.140 584 686 1.1E-32 T 10-10-2018 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Pfam PF09334 tRNA synthetases class I (M) 4 394 3.2E-150 T 10-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 544 38.861 T 10-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Gene3D G3DSA:3.40.50.620 4 382 5.2E-148 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Gene3D G3DSA:2.20.28.20 138 172 5.2E-148 T 10-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_11625 896e49857f709ce6bcda64222fb235b6 686 Gene3D G3DSA:1.10.730.10 387 525 8.2E-34 T 10-10-2018 AMQ28_11745 4298c8aea6839112d8fe60f3ae88a74c 433 Gene3D G3DSA:2.40.160.60 19 433 3.0E-27 T 10-10-2018 AMQ28_11745 4298c8aea6839112d8fe60f3ae88a74c 433 SUPERFAMILY SSF56935 19 433 1.9E-47 T 10-10-2018 AMQ28_11745 4298c8aea6839112d8fe60f3ae88a74c 433 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 42 433 3.7E-13 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMQ28_06715 02625e0c78acbfbaf371d442f73ad7b7 631 Pfam PF01964 Radical SAM ThiC family 143 587 5.6E-206 T 10-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMQ28_06715 02625e0c78acbfbaf371d442f73ad7b7 631 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 142 592 100.654 T 10-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMQ28_06715 02625e0c78acbfbaf371d442f73ad7b7 631 Gene3D G3DSA:3.20.20.540 211 523 1.8E-157 T 10-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMQ28_06715 02625e0c78acbfbaf371d442f73ad7b7 631 Pfam PF13667 ThiC-associated domain 27 103 3.7E-30 T 10-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMQ28_06715 02625e0c78acbfbaf371d442f73ad7b7 631 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 142 590 2.2E-220 T 10-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 PIRSF PIRSF500136 1 426 1.1E-149 T 10-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 8 181 1.2E-36 T 10-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 8 406 2.1E-121 T 10-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 SUPERFAMILY SSF51735 8 192 1.13E-48 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 SUPERFAMILY SSF48179 202 293 2.72E-25 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 PIRSF PIRSF000124 7 424 1.4E-60 T 10-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 418 1.6E-19 T 10-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 SMART SM00984 318 419 2.0E-28 T 10-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 SUPERFAMILY SSF52413 301 418 3.14E-26 T 10-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 291 1.2E-24 T 10-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 Gene3D G3DSA:3.40.50.720 3 197 2.5E-60 T 10-10-2018 AMQ28_07765 d3fc41624ffc6aa54ae8710d26de11aa 426 Gene3D G3DSA:3.40.50.720 202 425 7.5E-54 T 10-10-2018 AMQ28_03985 3b48fa078dac8b88d3f22ef544e06c04 147 SUPERFAMILY SSF55729 1 129 1.92E-20 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_03985 3b48fa078dac8b88d3f22ef544e06c04 147 Gene3D G3DSA:3.40.630.30 1 138 1.0E-20 T 10-10-2018 AMQ28_03985 3b48fa078dac8b88d3f22ef544e06c04 147 Pfam PF13673 Acetyltransferase (GNAT) domain 40 130 4.5E-17 T 10-10-2018 IPR000182 GNAT domain AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 SUPERFAMILY SSF47203 229 379 1.13E-43 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 216 2.5E-22 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Gene3D G3DSA:1.20.140.10 235 380 9.4E-41 T 10-10-2018 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 PIRSF PIRSF016578 9 380 2.4E-13 T 10-10-2018 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 5.1E-32 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Gene3D G3DSA:2.40.110.10 121 234 3.4E-39 T 10-10-2018 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 10-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Gene3D G3DSA:1.10.540.10 2 120 2.0E-33 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 SUPERFAMILY SSF56645 4 241 6.68E-80 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_02490 2dcd9ff6080a2f5fd915cfa7bc36801b 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 6.2E-38 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_11585 63c0133dcdef891add3c5889b50535df 418 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 290 388 1.0E-8 T 10-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AMQ28_11585 63c0133dcdef891add3c5889b50535df 418 SUPERFAMILY SSF56300 5 343 3.65E-49 T 10-10-2018 AMQ28_11585 63c0133dcdef891add3c5889b50535df 418 Pfam PF00149 Calcineurin-like phosphoesterase 5 234 9.1E-16 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMQ28_11585 63c0133dcdef891add3c5889b50535df 418 Gene3D G3DSA:3.60.21.10 1 279 5.6E-73 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like AMQ28_11585 63c0133dcdef891add3c5889b50535df 418 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 6 260 1.7E-53 T 10-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 187 268 2.0E-29 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.6E-86 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 346 440 1.5E-22 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 189 277 2.24E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 445 528 7.9E-20 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 429 534 1.94E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 6 98 5.6E-17 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 99 183 5.1E-9 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 3.5E-209 T 10-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 103 184 8.58E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 189 260 2.4E-22 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 18 86 2.0E-8 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 449 520 2.4E-14 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 102 171 4.6E-14 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 275 347 2.6E-21 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Pfam PF00575 S1 RNA binding domain 361 434 8.0E-20 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 449 520 6.8E-20 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 19 87 2.0E-8 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 190 260 5.8E-30 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 275 347 1.9E-25 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 362 434 7.9E-21 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SMART SM00316 103 171 3.8E-11 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 255 365 1.12E-27 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_01645 33dfa93763412bb76e560013975f169f 558 PIRSF PIRSF002111 1 534 1.9E-212 T 10-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 358 444 3.8E-25 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 Gene3D G3DSA:2.40.50.140 269 357 1.7E-28 T 10-10-2018 AMQ28_01645 33dfa93763412bb76e560013975f169f 558 SUPERFAMILY SSF50249 2 112 3.98E-21 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_06760 4d692913e8b0a0a70840b64a129eb82b 87 Pfam PF04023 FeoA domain 1 80 1.1E-15 T 10-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMQ28_06760 4d692913e8b0a0a70840b64a129eb82b 87 SUPERFAMILY SSF50037 4 80 3.43E-13 T 10-10-2018 IPR008988 Transcriptional repressor, C-terminal AMQ28_06760 4d692913e8b0a0a70840b64a129eb82b 87 SMART SM00899 1 82 2.2E-16 T 10-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMQ28_06760 4d692913e8b0a0a70840b64a129eb82b 87 Gene3D G3DSA:2.30.30.90 1 83 1.7E-23 T 10-10-2018 IPR038157 Ferrous iron transporter, core domain AMQ28_02855 2b73c906e788fe6a622c70acbc565237 310 SUPERFAMILY SSF103481 36 140 1.24E-8 T 10-10-2018 AMQ28_02855 2b73c906e788fe6a622c70acbc565237 310 TIGRFAM TIGR00688 rarD: protein RarD 3 254 8.4E-50 T 10-10-2018 IPR004626 RarD protein GO:0005887 AMQ28_02855 2b73c906e788fe6a622c70acbc565237 310 Pfam PF00892 EamA-like transporter family 3 139 6.0E-11 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 SUPERFAMILY SSF46689 256 306 2.96E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 Gene3D G3DSA:1.10.10.60 263 307 8.1E-14 T 10-10-2018 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 Pfam PF12833 Helix-turn-helix domain 226 305 3.5E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 287 303 4.0E-8 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 287 4.0E-8 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 Gene3D G3DSA:1.10.10.60 205 262 4.3E-12 T 10-10-2018 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 SUPERFAMILY SSF46689 204 255 2.46E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00285 61594820234475f055545dcf0861f7ca 307 Pfam PF12852 Cupin 2 189 2.7E-23 T 10-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMQ28_00285 61594820234475f055545dcf0861f7ca 307 SMART SM00342 220 303 2.7E-31 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_05320 b34194f55fdf191ea3a6936453e9d433 135 Gene3D G3DSA:3.40.250.10 37 134 8.1E-24 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_05320 b34194f55fdf191ea3a6936453e9d433 135 SMART SM00450 37 130 2.6E-16 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_05320 b34194f55fdf191ea3a6936453e9d433 135 SUPERFAMILY SSF52821 17 133 5.5E-26 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_05320 b34194f55fdf191ea3a6936453e9d433 135 Pfam PF00581 Rhodanese-like domain 47 126 6.2E-13 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 Pfam PF00355 Rieske [2Fe-2S] domain 52 136 1.0E-22 T 10-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 SUPERFAMILY SSF55961 171 450 1.26E-66 T 10-10-2018 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 15 447 1.2E-268 T 10-10-2018 IPR017639 Benzoate 1,2-dioxygenase, large subunit AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 95 118 - T 10-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 155 181 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 196 218 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 1.6E-49 T 10-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 204 391 1.7E-17 T 10-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 Gene3D G3DSA:2.102.10.10 52 179 9.5E-112 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 SUPERFAMILY SSF50022 14 171 5.76E-45 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_00615 54214352dd90d106939f5b8ef7f9396d 461 Gene3D G3DSA:3.90.380.10 30 404 9.5E-112 T 10-10-2018 AMQ28_07175 743c8274f967d54f1f30a410540de763 306 SUPERFAMILY SSF54909 3 303 1.22E-87 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_07175 743c8274f967d54f1f30a410540de763 306 Pfam PF04261 Dyp-type peroxidase family 29 298 1.5E-70 T 10-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AMQ28_07175 743c8274f967d54f1f30a410540de763 306 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 297 5.3E-68 T 10-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 6.9E-9 T 10-10-2018 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 SUPERFAMILY SSF46548 106 233 2.44E-37 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 Gene3D G3DSA:1.10.1060.10 106 235 6.3E-56 T 10-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 SUPERFAMILY SSF54292 3 105 4.18E-28 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 Gene3D G3DSA:3.10.20.30 1 105 1.1E-35 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 5.0E-31 T 10-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12240 772767a1b7c5117314d4b7bf0647cf94 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 10 228 1.3E-83 T 10-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 479 4.0E-183 T 10-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 Gene3D G3DSA:3.90.1300.10 3 487 1.8E-198 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 Pfam PF01425 Amidase 25 468 8.2E-161 T 10-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 479 89.801 T 10-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 SUPERFAMILY SSF75304 3 483 6.93E-164 T 10-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMQ28_11690 6275127a2c542df0456f2aa09197d149 492 ProSitePatterns PS00571 Amidases signature. 152 183 - T 10-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 186 4.4E-19 T 10-10-2018 AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 182 1.4E-31 T 10-10-2018 AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 1.5E-37 T 10-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 SUPERFAMILY SSF56784 1 211 2.94E-29 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 Gene3D G3DSA:3.40.50.1000 3 210 2.0E-66 T 10-10-2018 IPR023214 HAD superfamily AMQ28_06185 ab49453512e90b4aedb5d4d252669c60 216 Gene3D G3DSA:1.20.1440.100 15 88 2.0E-66 T 10-10-2018 AMQ28_13785 77da96c611f2b5ff2c157cd3c6043db7 289 Gene3D G3DSA:1.20.1530.20 3 283 1.7E-69 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_13785 77da96c611f2b5ff2c157cd3c6043db7 289 Pfam PF01758 Sodium Bile acid symporter family 11 194 2.1E-30 T 10-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 SUPERFAMILY SSF56935 36 730 2.96E-117 T 10-10-2018 AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 161 4.1E-30 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 Pfam PF00593 TonB dependent receptor 250 729 1.3E-52 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 713 730 - T 10-10-2018 IPR010917 TonB-dependent receptor, conserved site AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 Gene3D G3DSA:2.40.170.20 172 730 9.9E-126 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_05535 9ff0d1094b048391d00de2e87963a2a9 730 Gene3D G3DSA:2.170.130.10 35 166 3.2E-41 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Gene3D G3DSA:1.10.8.60 153 222 1.9E-5 T 10-10-2018 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Gene3D G3DSA:1.10.3710.10 329 424 3.9E-30 T 10-10-2018 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Gene3D G3DSA:3.40.50.300 1 152 8.7E-42 T 10-10-2018 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 SMART SM00382 41 153 2.8E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Gene3D G3DSA:1.20.272.10 224 328 1.4E-45 T 10-10-2018 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 45 147 1.5E-14 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Pfam PF16193 AAA C-terminal domain 180 250 2.3E-21 T 10-10-2018 IPR032423 AAA C-terminal domain AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 Pfam PF12002 MgsA AAA+ ATPase C terminal 251 410 1.3E-66 T 10-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 SUPERFAMILY SSF48019 236 418 7.37E-72 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMQ28_08390 ed8978043706ebae726a40bb4623e1af 424 SUPERFAMILY SSF52540 5 219 7.48E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11795 047deee0d54fac7fc95d2b121ceaf6b7 302 SUPERFAMILY SSF48576 15 295 8.43E-78 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMQ28_11795 047deee0d54fac7fc95d2b121ceaf6b7 302 Pfam PF00348 Polyprenyl synthetase 36 272 6.5E-57 T 10-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMQ28_11795 047deee0d54fac7fc95d2b121ceaf6b7 302 Gene3D G3DSA:1.10.600.10 8 299 1.8E-86 T 10-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMQ28_11795 047deee0d54fac7fc95d2b121ceaf6b7 302 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 221 233 - T 10-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMQ28_08820 23f36e82a201922873af6862a2a06984 226 SUPERFAMILY SSF48613 1 213 1.78E-64 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMQ28_08820 23f36e82a201922873af6862a2a06984 226 Gene3D G3DSA:1.20.910.10 1 224 4.0E-64 T 10-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMQ28_08820 23f36e82a201922873af6862a2a06984 226 Pfam PF03070 TENA/THI-4/PQQC family 22 214 5.5E-33 T 10-10-2018 IPR004305 Thiaminase-2/PQQC AMQ28_08820 23f36e82a201922873af6862a2a06984 226 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 18 214 2.8E-43 T 10-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AMQ28_13665 2bfdb0af79e4f12a43e8c6946a843a59 87 Pfam PF13359 DDE superfamily endonuclease 1 82 9.9E-10 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_12925 2bfdb0af79e4f12a43e8c6946a843a59 87 Pfam PF13359 DDE superfamily endonuclease 1 82 9.9E-10 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_10345 299dc7cfcb455d06b1377736e83024c8 191 Pfam PF01694 Rhomboid family 40 181 6.7E-13 T 10-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMQ28_10345 299dc7cfcb455d06b1377736e83024c8 191 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 28 178 5.5E-43 T 10-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria AMQ28_10345 299dc7cfcb455d06b1377736e83024c8 191 Gene3D G3DSA:1.20.1540.10 4 186 2.3E-14 T 10-10-2018 IPR035952 Rhomboid-like superfamily AMQ28_10345 299dc7cfcb455d06b1377736e83024c8 191 SUPERFAMILY SSF144091 11 183 2.35E-22 T 10-10-2018 AMQ28_12960 9b73deb6c8d84d62f70affb6a2ce79d5 160 SUPERFAMILY SSF54534 4 140 1.69E-37 T 10-10-2018 AMQ28_12960 9b73deb6c8d84d62f70affb6a2ce79d5 160 Gene3D G3DSA:3.10.50.40 4 154 1.3E-56 T 10-10-2018 AMQ28_12960 9b73deb6c8d84d62f70affb6a2ce79d5 160 Gene3D G3DSA:2.40.10.330 71 121 1.3E-56 T 10-10-2018 AMQ28_12960 9b73deb6c8d84d62f70affb6a2ce79d5 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 7 136 6.0E-15 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Pfam PF00817 impB/mucB/samB family 9 156 7.2E-30 T 10-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Gene3D G3DSA:2.30.40.20 14 77 7.7E-36 T 10-10-2018 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Gene3D G3DSA:1.10.150.20 177 237 6.0E-8 T 10-10-2018 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Pfam PF13438 Domain of unknown function (DUF4113) 378 426 1.7E-14 T 10-10-2018 IPR025188 Domain of unknown function DUF4113 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 SUPERFAMILY SSF56672 6 244 2.49E-58 T 10-10-2018 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Gene3D G3DSA:3.30.70.270 8 161 7.7E-36 T 10-10-2018 AMQ28_01060 1e699b7b0e12bcb0d8ed9d92ce885e7a 438 Pfam PF11799 impB/mucB/samB family C-terminal domain 250 361 3.9E-10 T 10-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 SMART SM00448 21 132 2.2E-43 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 Gene3D G3DSA:3.40.50.2300 8 141 1.7E-40 T 10-10-2018 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 SMART SM00862 172 248 3.7E-22 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 SUPERFAMILY SSF52172 22 143 5.83E-42 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 Gene3D G3DSA:1.10.10.10 146 254 1.0E-36 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 Pfam PF00072 Response regulator receiver domain 23 133 1.7E-29 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 Pfam PF00486 Transcriptional regulatory protein, C terminal 172 248 2.8E-21 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_09520 fb68bc0b87e1f65e42bc27c6cd93e32d 254 SUPERFAMILY SSF46894 154 250 2.58E-26 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_03775 e81ab879a0f65aecd2602c60d42590cd 111 Gene3D G3DSA:1.10.10.10 7 111 8.7E-33 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03775 e81ab879a0f65aecd2602c60d42590cd 111 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 13 94 7.3E-23 T 10-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMQ28_03775 e81ab879a0f65aecd2602c60d42590cd 111 SUPERFAMILY SSF46767 11 95 1.7E-23 T 10-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 21 556 3.3E-215 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 SUPERFAMILY SSF52016 379 557 2.75E-57 T 10-10-2018 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 126 136 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 464 475 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 Gene3D G3DSA:3.50.30.80 378 528 2.4E-52 T 10-10-2018 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 SUPERFAMILY SSF143975 5 376 9.81E-126 T 10-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 Pfam PF00920 Dehydratase family 38 553 4.6E-202 T 10-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_07905 d5ab9729ed7539cc4debca883fd14a0e 561 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 8 556 43.162 T 10-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_06970 45d995cc2fb5e12927bd6fe0f384914e 261 Pfam PF01183 Glycosyl hydrolases family 25 51 224 2.6E-45 T 10-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMQ28_06970 45d995cc2fb5e12927bd6fe0f384914e 261 SUPERFAMILY SSF51445 44 245 1.33E-57 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily AMQ28_06970 45d995cc2fb5e12927bd6fe0f384914e 261 Gene3D G3DSA:3.20.20.80 34 247 4.5E-69 T 10-10-2018 AMQ28_06970 45d995cc2fb5e12927bd6fe0f384914e 261 SMART SM00641 47 152 3.0E-8 T 10-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup AMQ28_04695 94d6decd4c65f6278348eb3ac2ecda56 148 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 6 141 3.0E-8 T 10-10-2018 IPR028973 PhnB-like AMQ28_04695 94d6decd4c65f6278348eb3ac2ecda56 148 SUPERFAMILY SSF54593 1 143 9.55E-31 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_04695 94d6decd4c65f6278348eb3ac2ecda56 148 Gene3D G3DSA:3.10.180.10 7 147 1.4E-42 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 Pfam PF02130 Uncharacterized protein family UPF0054 23 150 2.5E-35 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 154 22.856 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 SUPERFAMILY SSF55486 18 156 3.17E-44 T 10-10-2018 AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 119 129 - T 10-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 41 151 1.1E-34 T 10-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMQ28_10455 7cfda471e1e96a75982d2a8dd5a19295 159 Gene3D G3DSA:3.40.390.30 2 159 2.5E-46 T 10-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 PIRSF PIRSF000102 1 325 3.6E-61 T 10-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 Gene3D G3DSA:3.40.50.720 1 156 9.5E-57 T 10-10-2018 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 320 1.9E-32 T 10-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 Gene3D G3DSA:3.90.110.10 157 328 8.3E-61 T 10-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 SUPERFAMILY SSF56327 159 327 2.62E-59 T 10-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 147 2.1E-34 T 10-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 321 1.1E-142 T 10-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 55.131 T 10-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMQ28_10480 b47f94434cf3129f727dad2e5ff2f3df 328 SUPERFAMILY SSF51735 4 157 4.42E-43 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 Gene3D G3DSA:1.10.10.10 2 67 9.3E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 SUPERFAMILY SSF53383 90 464 2.24E-84 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 4.2E-10 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 Gene3D G3DSA:3.90.1150.10 97 461 3.1E-81 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 SMART SM00345 7 66 6.1E-9 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 SUPERFAMILY SSF46785 4 70 3.96E-14 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 Gene3D G3DSA:3.40.640.10 139 358 3.1E-81 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_00850 850ef7b24b78ad0e7a98cff3bdf7d97a 473 Pfam PF00155 Aminotransferase class I and II 146 445 1.0E-34 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 Gene3D G3DSA:3.40.50.9100 1 150 4.9E-65 T 10-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 SUPERFAMILY SSF52304 4 147 1.05E-60 T 10-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 144 2.3E-61 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 71.003 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 Pfam PF01220 Dehydroquinase class II 4 141 2.9E-60 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 142 9.0E-61 T 10-10-2018 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 PIRSF PIRSF001399 1 148 2.9E-61 T 10-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_01065 3cca62e1ec223b95c4de267caf4e364b 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 10-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 7 38 1.4E-5 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 142 4.5E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 SUPERFAMILY SSF51161 3 262 5.57E-80 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 152 180 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 4 262 43.166 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Gene3D G3DSA:2.160.10.10 1 194 9.3E-62 T 10-10-2018 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 PIRSF PIRSF000456 4 262 7.9E-104 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 179 261 7.3E-25 T 10-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 7 261 1.8E-97 T 10-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMQ28_13870 909387ec35a60188c1480d65e07501ef 262 Gene3D G3DSA:1.20.1180.10 196 262 1.7E-23 T 10-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 AMQ28_10485 06d180251bca2b6eccbdcd570ab8c460 82 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 1.7E-25 T 10-10-2018 IPR021250 Protein of unknown function DUF2789 AMQ28_10485 06d180251bca2b6eccbdcd570ab8c460 82 Gene3D G3DSA:1.10.10.1130 1 78 1.3E-25 T 10-10-2018 AMQ28_12585 ba3b564bdd8f9129115934ccb1b59f50 354 Gene3D G3DSA:1.10.3720.10 109 343 5.1E-19 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_12585 ba3b564bdd8f9129115934ccb1b59f50 354 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 139 347 5.3E-34 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_12585 ba3b564bdd8f9129115934ccb1b59f50 354 SUPERFAMILY SSF161098 115 332 3.01E-15 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 SUPERFAMILY SSF53271 250 485 9.76E-71 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 SUPERFAMILY SSF56235 2 257 1.37E-69 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 Gene3D G3DSA:3.60.20.10 2 467 1.4E-149 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 3.3E-157 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 PIRSF PIRSF000485 1 483 2.1E-162 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 Gene3D G3DSA:3.40.50.2020 275 445 1.4E-149 T 10-10-2018 AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 Pfam PF13522 Glutamine amidotransferase domain 65 207 2.1E-16 T 10-10-2018 AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.645 T 10-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMQ28_02210 122567ce734b78fd2545ffe684f667da 512 Pfam PF00156 Phosphoribosyl transferase domain 275 394 7.9E-10 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 61 114 1.3E-7 T 10-10-2018 IPR006260 TonB/TolA, C-terminal AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 174 223 5.3E-7 T 10-10-2018 IPR006260 TonB/TolA, C-terminal AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 Gene3D G3DSA:3.30.1150.10 18 134 1.6E-5 T 10-10-2018 AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 SUPERFAMILY SSF74653 160 217 3.27E-5 T 10-10-2018 AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 Gene3D G3DSA:3.30.1150.10 140 240 4.1E-5 T 10-10-2018 AMQ28_05645 ebdfdc4d4f4c79e2773a9c53f58c128f 244 SUPERFAMILY SSF74653 28 114 7.46E-9 T 10-10-2018 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 SMART SM00448 2 113 1.0E-33 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 SUPERFAMILY SSF52172 2 127 1.27E-36 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 222 1.5E-18 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 Gene3D G3DSA:1.10.10.10 128 224 1.6E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 Pfam PF00072 Response regulator receiver domain 4 113 3.7E-26 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 SMART SM00862 151 222 1.6E-19 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 Gene3D G3DSA:3.40.50.2300 1 123 3.5E-36 T 10-10-2018 AMQ28_11840 0f5e069cfa771453737178b334e9b252 225 SUPERFAMILY SSF46894 129 222 4.71E-25 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 Gene3D G3DSA:3.30.465.10 201 278 5.0E-20 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 Pfam PF00571 CBS domain 125 179 6.1E-7 T 10-10-2018 IPR000644 CBS domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 Pfam PF00571 CBS domain 59 116 2.9E-6 T 10-10-2018 IPR000644 CBS domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 Pfam PF03471 Transporter associated domain 205 277 1.1E-16 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 SUPERFAMILY SSF56176 204 278 3.54E-15 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 SMART SM01091 201 279 1.1E-14 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 SMART SM00116 131 179 9.9 T 10-10-2018 IPR000644 CBS domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 SMART SM00116 67 117 0.017 T 10-10-2018 IPR000644 CBS domain AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 SUPERFAMILY SSF54631 55 191 6.59E-33 T 10-10-2018 AMQ28_06400 68a36922762a4e4053ee2a53a2f976aa 279 Gene3D G3DSA:3.10.580.10 38 190 4.0E-51 T 10-10-2018 AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 SMART SM00671 89 124 5.6E-8 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 SMART SM00671 53 88 2.5E-8 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 SMART SM00671 125 156 190.0 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 SUPERFAMILY SSF81901 42 155 1.28E-25 T 10-10-2018 AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 Gene3D G3DSA:1.25.40.10 20 195 1.3E-34 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 Pfam PF08238 Sel1 repeat 138 155 14.0 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 Pfam PF08238 Sel1 repeat 54 87 4.1E-6 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_05580 ef71cfa739e09993ec82c4b1057b0e2a 195 Pfam PF08238 Sel1 repeat 89 124 3.7E-8 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 Pfam PF00005 ABC transporter 328 459 9.8E-20 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 SMART SM00382 26 222 4.5E-9 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 SMART SM00382 336 503 4.4E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 SUPERFAMILY SSF52540 2 254 1.82E-44 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 Gene3D G3DSA:3.40.50.300 5 275 3.3E-54 T 10-10-2018 AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 Gene3D G3DSA:3.40.50.300 276 535 5.5E-51 T 10-10-2018 AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 Pfam PF12848 ABC transporter 216 294 1.3E-27 T 10-10-2018 IPR032781 ABC-transporter extension domain AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 SUPERFAMILY SSF52540 295 516 4.04E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_08070 c2120ff9885d8b6a367ae7d008004176 644 Pfam PF00005 ABC transporter 18 177 7.5E-20 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 SMART SM00471 59 261 1.4E-7 T 10-10-2018 IPR003607 HD/PDEase domain AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 SUPERFAMILY SSF109604 25 385 1.88E-63 T 10-10-2018 AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 Gene3D G3DSA:1.10.3210.10 28 244 9.6E-142 T 10-10-2018 AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 Gene3D G3DSA:1.10.3550.10 114 429 9.6E-142 T 10-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 Gene3D G3DSA:1.10.3410.10 245 356 9.6E-142 T 10-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 Pfam PF01966 HD domain 63 141 2.1E-8 T 10-10-2018 IPR006674 HD domain AMQ28_03095 a8dcbc5d442b24991e29c1f14518bee8 446 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 438 3.4E-97 T 10-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AMQ28_10000 82856cbe5de8426f1737e33ba7b505b6 110 Pfam PF08888 HopJ type III effector protein 3 107 9.8E-42 T 10-10-2018 IPR014984 HopJ type III effector protein AMQ28_10000 82856cbe5de8426f1737e33ba7b505b6 110 Gene3D G3DSA:3.20.160.10 1 110 2.0E-44 T 10-10-2018 IPR038604 Type III effector HopJ superfamily AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 SUPERFAMILY SSF53901 86 359 4.12E-56 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 88 502 7.9E-115 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 Pfam PF00108 Thiolase, N-terminal domain 86 353 8.4E-49 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 Pfam PF02803 Thiolase, C-terminal domain 364 503 1.4E-29 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 SUPERFAMILY SSF53901 359 503 1.57E-28 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_01510 7947b06e5ecc23517a8fcc9ac987340f 503 Gene3D G3DSA:3.40.47.10 75 503 1.1E-100 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 1.3E-18 T 10-10-2018 IPR022569 Ferredoxin, C-terminal AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 SUPERFAMILY SSF54862 1 97 5.67E-25 T 10-10-2018 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 Gene3D G3DSA:3.30.70.20 2 102 1.6E-32 T 10-10-2018 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 4.5E-18 T 10-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 4.5E-18 T 10-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 4.5E-18 T 10-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 10-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMQ28_13710 0378db32f366029ed2aec3fdb381d3ff 107 Pfam PF00037 4Fe-4S binding domain 34 55 5.6E-7 T 10-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMQ28_02520 0b062fdf2610c1ff3a931f915e0a4745 187 Gene3D G3DSA:1.25.40.10 88 163 5.9E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_02520 0b062fdf2610c1ff3a931f915e0a4745 187 SUPERFAMILY SSF48452 92 184 1.27E-5 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SMART SM00387 241 364 2.4E-25 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SMART SM00388 137 201 6.2E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 2.5E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 2.5E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 2.5E-12 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SUPERFAMILY SSF55874 203 362 7.99E-34 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SMART SM00091 7 74 4.0E-4 T 10-10-2018 IPR000014 PAS domain AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SUPERFAMILY SSF55785 9 102 2.28E-7 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 361 4.8E-16 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 SUPERFAMILY SSF47384 129 196 1.33E-13 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Gene3D G3DSA:3.30.565.10 201 362 4.0E-37 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 194 1.1E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Gene3D G3DSA:3.30.450.20 9 120 3.0E-16 T 10-10-2018 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Pfam PF00989 PAS fold 8 100 5.2E-10 T 10-10-2018 IPR013767 PAS fold GO:0006355 AMQ28_13810 0a2dd680200e97a148689c59d42159ee 369 Gene3D G3DSA:1.10.287.130 140 197 1.1E-13 T 10-10-2018 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.8E-15 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.9E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.9E-10 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 Gene3D G3DSA:1.10.357.10 10 200 2.3E-33 T 10-10-2018 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 SUPERFAMILY SSF46689 8 91 3.64E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00705 19cae12651331fd4f5f92e2bbacf387c 215 SUPERFAMILY SSF48498 87 189 7.29E-6 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Gene3D G3DSA:3.30.830.10 530 787 1.2E-110 T 10-10-2018 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 SUPERFAMILY SSF63411 262 523 6.6E-56 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Pfam PF05193 Peptidase M16 inactive domain 208 391 9.9E-8 T 10-10-2018 IPR007863 Peptidase M16, C-terminal AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Gene3D G3DSA:3.30.830.10 260 488 3.5E-56 T 10-10-2018 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 SUPERFAMILY SSF63411 28 244 4.33E-42 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 SUPERFAMILY SSF63411 522 770 2.28E-53 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 SUPERFAMILY SSF63411 791 966 7.33E-40 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Pfam PF08367 Peptidase M16C associated 466 715 1.1E-59 T 10-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Gene3D G3DSA:3.30.830.10 499 950 1.2E-110 T 10-10-2018 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Pfam PF00675 Insulinase (Peptidase family M16) 63 153 3.4E-9 T 10-10-2018 IPR011765 Peptidase M16, N-terminal AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 SMART SM01264 466 715 8.2E-80 T 10-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 AMQ28_14145 599f8fe169e483e227f89f8400beb0f6 979 Gene3D G3DSA:3.30.830.10 3 255 1.1E-81 T 10-10-2018 AMQ28_08555 7f9510273a0d3092d89c3e727474ad71 188 Pfam PF02525 Flavodoxin-like fold 1 186 3.9E-44 T 10-10-2018 IPR003680 Flavodoxin-like fold AMQ28_08555 7f9510273a0d3092d89c3e727474ad71 188 SUPERFAMILY SSF52218 1 184 1.58E-47 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_08555 7f9510273a0d3092d89c3e727474ad71 188 Gene3D G3DSA:3.40.50.360 1 188 2.4E-54 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_08555 7f9510273a0d3092d89c3e727474ad71 188 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 182 27.794 T 10-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 2.2E-142 T 10-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 135 8.5E-51 T 10-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 SUPERFAMILY SSF52317 158 376 1.74E-60 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.5E-5 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.5E-5 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.5E-5 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 SUPERFAMILY SSF52021 4 144 1.7E-54 T 10-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 4.8E-11 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 4.8E-11 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 4.8E-11 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 Pfam PF00117 Glutamine amidotransferase class-I 196 372 1.4E-46 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 SMART SM01097 3 136 1.1E-87 T 10-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 46.648 T 10-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 Gene3D G3DSA:3.40.50.880 155 377 4.2E-70 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 Gene3D G3DSA:3.50.30.20 3 154 5.1E-58 T 10-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 3.4E-39 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 3.4E-39 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 3.4E-39 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 3.4E-39 T 10-10-2018 AMQ28_03740 3c99a4c49346cda5af5a18da7cae3625 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 3.4E-39 T 10-10-2018 AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 SMART SM00849 557 755 0.0015 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 Pfam PF00753 Metallo-beta-lactamase superfamily 554 637 2.6E-5 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 SUPERFAMILY SSF56281 545 793 9.65E-42 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 94 784 2.0E-93 T 10-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 262 454 1.5E-23 T 10-10-2018 IPR004477 ComEC/Rec2-related protein AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 Gene3D G3DSA:3.60.15.10 545 798 1.5E-54 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 Pfam PF03772 Competence protein 240 523 7.6E-56 T 10-10-2018 IPR004477 ComEC/Rec2-related protein AMQ28_03225 e625e9814c03cc207fc48d9ed097f19b 809 Pfam PF13567 Domain of unknown function (DUF4131) 23 185 1.1E-7 T 10-10-2018 IPR025405 Domain of unknown function DUF4131 AMQ28_06150 5d693bbb056ca82b5aa4df8e7e647f01 444 SUPERFAMILY SSF46689 10 115 6.81E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_06150 5d693bbb056ca82b5aa4df8e7e647f01 444 SUPERFAMILY SSF53098 133 291 1.12E-17 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_06150 5d693bbb056ca82b5aa4df8e7e647f01 444 Pfam PF00665 Integrase core domain 140 260 5.2E-8 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_06150 5d693bbb056ca82b5aa4df8e7e647f01 444 Gene3D G3DSA:3.30.420.10 129 311 7.2E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_06150 5d693bbb056ca82b5aa4df8e7e647f01 444 Pfam PF13518 Helix-turn-helix domain 11 61 2.3E-7 T 10-10-2018 AMQ28_02795 d27ef05e08c9c557ad99cab345c12eb7 456 SUPERFAMILY SSF103473 16 441 1.44E-76 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_02795 d27ef05e08c9c557ad99cab345c12eb7 456 ProSitePatterns PS00217 Sugar transport proteins signature 2. 122 147 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_02795 d27ef05e08c9c557ad99cab345c12eb7 456 Gene3D G3DSA:1.20.1250.20 20 439 5.7E-69 T 10-10-2018 AMQ28_02795 d27ef05e08c9c557ad99cab345c12eb7 456 Pfam PF07690 Major Facilitator Superfamily 31 346 3.3E-36 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 PIRSF PIRSF006648 3 254 8.9E-20 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 Pfam PF01061 ABC-2 type transporter 10 219 6.5E-36 T 10-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 1.3E-6 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 1.3E-6 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 1.3E-6 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMQ28_12900 050bd9fed5ba336e00025d6bac0aa365 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 1.3E-6 T 10-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMQ28_03660 641af7188f13506f813d591bd033008c 376 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 41 362 1.6E-48 T 10-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMQ28_03660 641af7188f13506f813d591bd033008c 376 Gene3D G3DSA:3.20.20.190 35 369 2.7E-109 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMQ28_03660 641af7188f13506f813d591bd033008c 376 SUPERFAMILY SSF51695 35 367 7.85E-75 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMQ28_10400 9990cdeaa2c5ef330f931df1b4144368 165 Pfam PF14317 YcxB-like protein 105 157 2.3E-6 T 10-10-2018 IPR025588 YcxB-like protein AMQ28_10845 a5aff439324342a8d23b17815486207e 768 SUPERFAMILY SSF109604 31 229 1.41E-43 T 10-10-2018 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Pfam PF13291 ACT domain 689 763 1.8E-18 T 10-10-2018 IPR002912 ACT domain AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Pfam PF04607 Region found in RelA / SpoT proteins 274 383 5.1E-34 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Gene3D G3DSA:3.30.70.260 690 767 1.2E-17 T 10-10-2018 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 SMART SM00954 274 383 1.3E-60 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 SUPERFAMILY SSF55021 689 765 4.58E-13 T 10-10-2018 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Gene3D G3DSA:3.30.460.10 232 363 1.7E-49 T 10-10-2018 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 77 762 4.3E-171 T 10-10-2018 IPR004811 RelA/SpoT family GO:0015969 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Gene3D G3DSA:3.10.20.30 430 502 1.6E-28 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_10845 a5aff439324342a8d23b17815486207e 768 SUPERFAMILY SSF81271 433 493 3.71E-18 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Gene3D G3DSA:1.10.3210.10 24 230 3.0E-41 T 10-10-2018 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Pfam PF13328 HD domain 59 214 1.6E-37 T 10-10-2018 IPR003607 HD/PDEase domain AMQ28_10845 a5aff439324342a8d23b17815486207e 768 Pfam PF02824 TGS domain 434 493 2.3E-18 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMQ28_10845 a5aff439324342a8d23b17815486207e 768 SUPERFAMILY SSF81301 231 390 1.63E-58 T 10-10-2018 AMQ28_03045 43d3826d89094397a1a51c0a9bb8f0e1 231 SUPERFAMILY SSF52402 12 225 1.85E-59 T 10-10-2018 AMQ28_03045 43d3826d89094397a1a51c0a9bb8f0e1 231 TIGRFAM TIGR00290 MJ0570_dom: MJ0570-related uncharacterized domain 13 226 1.5E-42 T 10-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 AMQ28_03045 43d3826d89094397a1a51c0a9bb8f0e1 231 Gene3D G3DSA:3.40.50.620 9 148 9.1E-24 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03045 43d3826d89094397a1a51c0a9bb8f0e1 231 Gene3D G3DSA:3.90.1490.10 150 231 8.6E-13 T 10-10-2018 AMQ28_03045 43d3826d89094397a1a51c0a9bb8f0e1 231 Pfam PF01902 Diphthamide synthase 13 225 5.2E-42 T 10-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 AMQ28_00110 6246bc848682e74082b0c809d293c375 124 Pfam PF11042 Protein of unknown function (DUF2750) 21 112 2.2E-17 T 10-10-2018 IPR021284 Protein of unknown function DUF2750 AMQ28_07595 fed37357f685d4f31fba054d29edce57 105 Pfam PF01527 Transposase 4 85 3.0E-6 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_07595 fed37357f685d4f31fba054d29edce57 105 Gene3D G3DSA:1.10.10.10 1 60 4.3E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07595 fed37357f685d4f31fba054d29edce57 105 SUPERFAMILY SSF46689 1 97 1.11E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00610 a0cac61408cefcbcee715c0b36f8db5c 163 Gene3D G3DSA:3.10.450.50 1 163 7.0E-45 T 10-10-2018 AMQ28_00610 a0cac61408cefcbcee715c0b36f8db5c 163 Pfam PF00866 Ring hydroxylating beta subunit 15 155 2.9E-46 T 10-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 AMQ28_00610 a0cac61408cefcbcee715c0b36f8db5c 163 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 9 163 9.1E-89 T 10-10-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0055114 AMQ28_00610 a0cac61408cefcbcee715c0b36f8db5c 163 SUPERFAMILY SSF54427 1 163 6.59E-53 T 10-10-2018 IPR032710 NTF2-like domain superfamily AMQ28_07645 19233320c8ceccb575505edb639f450e 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 153 2.2E-56 T 10-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07645 19233320c8ceccb575505edb639f450e 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 11 156 31.055 T 10-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07645 19233320c8ceccb575505edb639f450e 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 152 4.7E-53 T 10-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07645 19233320c8ceccb575505edb639f450e 156 Gene3D G3DSA:3.40.50.960 3 156 1.1E-59 T 10-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_07645 19233320c8ceccb575505edb639f450e 156 SUPERFAMILY SSF52121 10 156 1.57E-60 T 10-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMQ28_00420 431b7499516938ba17be7a25643007ef 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 118 217 4.4E-9 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_00420 431b7499516938ba17be7a25643007ef 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 83 4.7E-8 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_00420 431b7499516938ba17be7a25643007ef 232 SMART SM00855 3 176 2.6E-10 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_00420 431b7499516938ba17be7a25643007ef 232 SUPERFAMILY SSF53254 1 222 1.83E-31 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_00420 431b7499516938ba17be7a25643007ef 232 Gene3D G3DSA:3.40.50.1240 1 229 1.3E-30 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Gene3D G3DSA:3.40.50.12780 48 513 1.8E-109 T 10-10-2018 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 ProSitePatterns PS00455 Putative AMP-binding domain signature. 259 270 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Gene3D G3DSA:3.30.300.30 516 645 3.4E-32 T 10-10-2018 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 2.2E-20 T 10-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 SUPERFAMILY SSF56801 19 644 1.7E-187 T 10-10-2018 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 643 52.106 T 10-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Pfam PF00501 AMP-binding enzyme 81 520 1.6E-94 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 641 0.0 T 10-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMQ28_08735 318f05739d20195bd0aa67bbe8bc770d 647 Pfam PF13193 AMP-binding enzyme C-terminal domain 529 607 9.3E-27 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 Gene3D G3DSA:1.10.101.10 349 420 3.6E-8 T 10-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 Gene3D G3DSA:1.10.530.10 87 339 5.2E-82 T 10-10-2018 AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 SUPERFAMILY SSF47090 349 417 2.35E-13 T 10-10-2018 IPR036365 PGBD-like superfamily AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 SUPERFAMILY SSF53955 36 344 7.31E-95 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 Gene3D G3DSA:1.10.8.350 59 220 5.2E-82 T 10-10-2018 AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 Pfam PF01471 Putative peptidoglycan binding domain 361 414 2.7E-8 T 10-10-2018 IPR002477 Peptidoglycan binding-like AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 Pfam PF13406 Transglycosylase SLT domain 45 340 1.0E-103 T 10-10-2018 IPR031304 Transglycosylase SLT domain 2 AMQ28_08185 291f1c8f5c2a03d715338b175d77c3dd 426 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 44 344 4.1E-109 T 10-10-2018 IPR011970 Lytic murein transglycosylase AMQ28_09595 93f214e080bcc91ceed973f80d4ce531 490 SUPERFAMILY SSF56349 216 438 1.15E-20 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_09595 93f214e080bcc91ceed973f80d4ce531 490 Gene3D G3DSA:1.10.443.10 188 436 8.5E-19 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_09595 93f214e080bcc91ceed973f80d4ce531 490 Pfam PF00589 Phage integrase family 219 432 1.4E-11 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_05210 b0abaf3e5649dac0288d2d43f24a03cb 141 Pfam PF02566 OsmC-like protein 41 137 6.7E-17 T 10-10-2018 IPR003718 OsmC/Ohr family AMQ28_05210 b0abaf3e5649dac0288d2d43f24a03cb 141 SUPERFAMILY SSF82784 1 139 2.88E-44 T 10-10-2018 IPR036102 OsmC/Ohr superfamily AMQ28_05210 b0abaf3e5649dac0288d2d43f24a03cb 141 Gene3D G3DSA:3.30.300.20 47 140 1.2E-32 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_05210 b0abaf3e5649dac0288d2d43f24a03cb 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 7.5E-57 T 10-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMQ28_05210 b0abaf3e5649dac0288d2d43f24a03cb 141 Gene3D G3DSA:2.20.25.10 1 46 1.2E-21 T 10-10-2018 AMQ28_01610 7ad632557e547c440560bb9279b0983c 483 SUPERFAMILY SSF53720 6 478 1.83E-143 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_01610 7ad632557e547c440560bb9279b0983c 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMQ28_01610 7ad632557e547c440560bb9279b0983c 483 Gene3D G3DSA:3.40.309.10 259 446 4.1E-151 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_01610 7ad632557e547c440560bb9279b0983c 483 Pfam PF00171 Aldehyde dehydrogenase family 16 476 1.3E-153 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_01610 7ad632557e547c440560bb9279b0983c 483 Gene3D G3DSA:3.40.605.10 12 473 4.1E-151 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_09115 8fe46502d41b039cd81d871d17bb6ee9 61 Pfam PF13356 Arm DNA-binding domain 2 61 1.1E-9 T 10-10-2018 IPR025166 Integrase, DNA-binding domain AMQ28_09115 8fe46502d41b039cd81d871d17bb6ee9 61 Gene3D G3DSA:3.30.160.390 1 61 1.6E-21 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 SMART SM01409 8 61 9.0E-17 T 10-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 7.0E-22 T 10-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 Gene3D G3DSA:3.90.940.10 1 84 1.3E-26 T 10-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.166 T 10-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 SUPERFAMILY SSF63562 1 69 7.67E-25 T 10-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMQ28_09830 b9fbfa2c41bf3d1121c05f6df9f4d9a6 93 Pfam PF01192 RNA polymerase Rpb6 8 59 3.8E-17 T 10-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 Gene3D G3DSA:3.30.540.10 2 186 3.2E-63 T 10-10-2018 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PIRSF PIRSF500210 1 324 5.3E-117 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 SUPERFAMILY SSF56655 5 323 1.69E-103 T 10-10-2018 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PIRSF PIRSF000904 1 324 7.2E-115 T 10-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 Gene3D G3DSA:3.40.190.80 188 324 1.2E-49 T 10-10-2018 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 12 185 1.8E-56 T 10-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 140 163 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 26 53 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 63 89 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 171 194 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 197 224 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 324 1.6E-59 T 10-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_03155 4397befa04d1844e00c33a122a09fb05 324 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 324 43.099 T 10-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 Gene3D G3DSA:3.10.50.30 44 134 2.4E-25 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 49 125 8.8E-16 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 PIRSF PIRSF006092 6 127 5.5E-23 T 10-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 SUPERFAMILY SSF54534 48 126 1.44E-15 T 10-10-2018 AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 Pfam PF14760 Rnk N-terminus 4 43 1.1E-12 T 10-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain AMQ28_12955 ae3ebfe6c44a8ec368852139a12d5aba 134 Gene3D G3DSA:1.10.286.20 1 43 1.6E-9 T 10-10-2018 AMQ28_00195 c77afeb02fd65c16075429b2b43a080a 180 Gene3D G3DSA:3.40.50.880 1 180 1.5E-43 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_00195 c77afeb02fd65c16075429b2b43a080a 180 Pfam PF01965 DJ-1/PfpI family 3 177 1.2E-42 T 10-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMQ28_00195 c77afeb02fd65c16075429b2b43a080a 180 SUPERFAMILY SSF52317 1 178 1.58E-41 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_00195 c77afeb02fd65c16075429b2b43a080a 180 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 6 178 5.2E-48 T 10-10-2018 IPR006286 Deglycase PfpI AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 10-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 PRINTS PR00355 Adrenodoxin signature 42 52 1.4E-8 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 PRINTS PR00355 Adrenodoxin signature 60 74 1.4E-8 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 PRINTS PR00355 Adrenodoxin signature 83 91 1.4E-8 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 SUPERFAMILY SSF54292 6 108 9.01E-29 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 Gene3D G3DSA:3.10.20.30 1 112 8.7E-32 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 1.2E-50 T 10-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 AMQ28_14055 a2692b2a3c7ba910ebd3a311a75170c7 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 91 5.3E-11 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 SMART SM00880 227 479 1.7E-48 T 10-10-2018 IPR007899 CHAD domain AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 SMART SM01118 1 201 2.0E-26 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 Pfam PF01928 CYTH domain 1 168 1.5E-17 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 Gene3D G3DSA:2.40.320.10 1 195 1.3E-31 T 10-10-2018 AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 Gene3D G3DSA:1.40.20.10 206 485 5.1E-48 T 10-10-2018 IPR038186 CHAD domain superfamily AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 Pfam PF05235 CHAD domain 232 444 6.2E-40 T 10-10-2018 IPR007899 CHAD domain AMQ28_02095 ac0bafd62f89fc2a737ef1b781485bc1 487 SUPERFAMILY SSF55154 1 210 5.4E-33 T 10-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 PIRSF PIRSF039085 4 247 3.1E-101 T 10-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 Pfam PF00005 ABC transporter 23 171 7.4E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 SUPERFAMILY SSF52540 7 241 6.51E-74 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 Gene3D G3DSA:3.40.50.300 7 246 1.5E-73 T 10-10-2018 AMQ28_11860 760b00f113a81a4bfd667327d2c8ea47 247 SMART SM00382 32 219 4.8E-14 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_09795 d201128e17824f0df73e664535c379f3 461 Gene3D G3DSA:3.40.720.10 212 456 1.7E-13 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMQ28_09795 d201128e17824f0df73e664535c379f3 461 Pfam PF00884 Sulfatase 283 380 2.1E-6 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMQ28_09795 d201128e17824f0df73e664535c379f3 461 SUPERFAMILY SSF53649 277 379 2.2E-5 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 61 7.9E-6 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 Gene3D G3DSA:3.30.70.20 471 565 5.6E-37 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 SUPERFAMILY SSF54373 215 311 2.2E-33 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 Gene3D G3DSA:3.30.9.90 83 470 1.2E-187 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 SUPERFAMILY SSF54862 470 570 2.73E-29 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 1.4E-6 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 183 198 1.4E-6 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 466 567 3.7E-50 T 10-10-2018 AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 SUPERFAMILY SSF51905 6 438 3.4E-46 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_06385 2cacc6d8236425448a1a557f7aa111fa 570 Gene3D G3DSA:3.50.50.60 10 407 1.2E-187 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 SUPERFAMILY SSF54534 82 157 1.83E-25 T 10-10-2018 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 7.8E-30 T 10-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 9.2E-29 T 10-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 5.0E-57 T 10-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 10-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 Gene3D G3DSA:1.10.287.180 1 75 6.1E-29 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.427 T 10-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 SUPERFAMILY SSF46557 3 78 1.44E-26 T 10-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 Gene3D G3DSA:3.10.50.30 76 158 1.0E-32 T 10-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMQ28_03750 ea605309714e907a0af31ddc71d730b5 158 PIRSF PIRSF006092 1 158 2.5E-53 T 10-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PIRSF PIRSF002097 1 87 4.3E-35 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 Pfam PF02954 Bacterial regulatory protein, Fis family 44 83 3.2E-15 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 50 67 1.3E-12 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 67 87 1.3E-12 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 46 58 2.0E-9 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 31 46 2.0E-9 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 15 31 2.0E-9 T 10-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 Gene3D G3DSA:1.10.10.60 2 86 7.0E-27 T 10-10-2018 AMQ28_13770 9beb2be0ff7814b76031033622824e1f 89 SUPERFAMILY SSF46689 15 86 6.27E-22 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_02800 c69cbcee5f6ae050e0cb185a0d6ca1ae 510 SUPERFAMILY SSF53383 19 496 9.47E-115 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_02800 c69cbcee5f6ae050e0cb185a0d6ca1ae 510 Gene3D G3DSA:3.90.1150.170 47 488 1.4E-127 T 10-10-2018 AMQ28_02800 c69cbcee5f6ae050e0cb185a0d6ca1ae 510 Gene3D G3DSA:3.40.640.10 113 372 1.4E-127 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_02800 c69cbcee5f6ae050e0cb185a0d6ca1ae 510 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 82 428 9.8E-60 T 10-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMQ28_02800 c69cbcee5f6ae050e0cb185a0d6ca1ae 510 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 312 333 - T 10-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 AMQ28_11280 57b445b3679687c8d22f4358818ebb6d 281 SMART SM00563 83 194 3.7E-16 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_11280 57b445b3679687c8d22f4358818ebb6d 281 SUPERFAMILY SSF69593 25 262 1.44E-22 T 10-10-2018 AMQ28_11280 57b445b3679687c8d22f4358818ebb6d 281 Pfam PF01553 Acyltransferase 72 186 4.0E-16 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 127 1.1E-32 T 10-10-2018 IPR010627 Peptidase A24A, N-terminal AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 Pfam PF01478 Type IV leader peptidase family 138 247 9.0E-21 T 10-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 9.5E-24 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 9.5E-24 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 9.5E-24 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMQ28_06630 9f195174627bdbb427997bb7a9af64ca 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 9.5E-24 T 10-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 Gene3D G3DSA:1.10.8.630 13 125 1.2E-30 T 10-10-2018 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 454 475 - T 10-10-2018 IPR013087 Zinc finger C2H2-type GO:0003676 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 SMART SM00487 204 389 1.6E-21 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 Pfam PF00271 Helicase conserved C-terminal domain 531 598 8.6E-5 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 TIGRFAM TIGR00595 priA: primosomal protein N' 230 736 1.1E-186 T 10-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 Hamap MF_00983 Probable primosomal protein N' [priA]. 16 739 24.396 T 10-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 Pfam PF00270 DEAD/DEAH box helicase 210 371 2.1E-15 T 10-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 Gene3D G3DSA:3.40.50.300 197 388 4.8E-75 T 10-10-2018 AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 SMART SM00490 502 599 5.8E-6 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 SUPERFAMILY SSF52540 205 379 4.87E-41 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06425 4897ec5ccab84f8cdf5a1efde7161000 740 SUPERFAMILY SSF52540 470 624 3.99E-20 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 SUPERFAMILY SSF52540 97 382 8.95E-92 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 SUPERFAMILY SSF50615 11 95 2.15E-27 T 10-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.542 T 10-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 8.6E-45 T 10-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Gene3D G3DSA:1.20.150.20 384 514 1.5E-46 T 10-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Gene3D G3DSA:3.40.50.300 95 383 1.6E-128 T 10-10-2018 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 10-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 SUPERFAMILY SSF47917 384 512 5.49E-46 T 10-10-2018 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 7.0E-14 T 10-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Gene3D G3DSA:2.40.30.20 2 94 3.0E-31 T 10-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 8.3E-73 T 10-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMQ28_07120 6c4ecc07ba8d234d40312571a4e596dd 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 512 1.2E-248 T 10-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07295 657c912715fe8cec31e30e2c79e8e997 74 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 66 4.9E-21 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_07295 657c912715fe8cec31e30e2c79e8e997 74 Gene3D G3DSA:1.10.260.40 1 70 8.8E-12 T 10-10-2018 AMQ28_07295 657c912715fe8cec31e30e2c79e8e997 74 SUPERFAMILY SSF47413 3 66 9.01E-12 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_08835 54ea27d0a362bbabb0974ee7346085f3 376 Pfam PF00589 Phage integrase family 175 366 6.6E-9 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_08835 54ea27d0a362bbabb0974ee7346085f3 376 Gene3D G3DSA:1.10.443.10 135 367 2.3E-19 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_08835 54ea27d0a362bbabb0974ee7346085f3 376 Gene3D G3DSA:1.10.150.130 25 133 3.7E-5 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_08835 54ea27d0a362bbabb0974ee7346085f3 376 SUPERFAMILY SSF56349 33 372 5.59E-18 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 Gene3D G3DSA:3.40.50.1000 2 176 5.1E-52 T 10-10-2018 IPR023214 HAD superfamily AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 SUPERFAMILY SSF56784 10 171 2.44E-40 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 PIRSF PIRSF006118 1 175 3.2E-61 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 15 128 9.4E-13 T 10-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 14 164 5.2E-47 T 10-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_13635 03c3f0a64c325419446b865e49d251d3 179 Pfam PF08282 haloacid dehalogenase-like hydrolase 88 146 1.2E-8 T 10-10-2018 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 471 3.2E-176 T 10-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 4 472 38.187 T 10-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 SUPERFAMILY SSF47323 328 471 6.28E-34 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 63 72 5.6E-31 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 27 38 5.6E-31 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 5.6E-31 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 5.6E-31 T 10-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 19 318 1.5E-132 T 10-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 Gene3D G3DSA:1.20.120.640 310 472 1.4E-39 T 10-10-2018 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 Gene3D G3DSA:3.40.50.620 1 309 7.5E-135 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 SMART SM00840 349 411 1.5E-19 T 10-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 Pfam PF09190 DALR domain 349 411 7.6E-19 T 10-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMQ28_13625 70449f1232681bb9e0a3d3431bcdf2d8 473 SUPERFAMILY SSF52374 6 318 6.4E-96 T 10-10-2018 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 Gene3D G3DSA:2.40.30.10 35 132 3.8E-14 T 10-10-2018 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 Pfam PF00970 Oxidoreductase FAD-binding domain 47 134 6.6E-7 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 Gene3D G3DSA:3.40.50.80 134 265 2.7E-24 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 Pfam PF00175 Oxidoreductase NAD-binding domain 145 246 2.0E-13 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 SUPERFAMILY SSF63380 32 137 1.65E-16 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 SUPERFAMILY SSF52343 130 250 6.55E-26 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 SUPERFAMILY SSF54292 254 355 4.72E-15 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 Gene3D G3DSA:3.10.20.30 266 355 5.6E-13 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 232 240 1.1E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 144 163 1.1E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 87 94 1.1E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_02025 5632af5df053b5ff8589399fa0dc3f25 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 129 138 1.1E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 271 17.179 T 10-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 SUPERFAMILY SSF52402 1 197 5.15E-43 T 10-10-2018 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 1 168 3.9E-43 T 10-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Gene3D G3DSA:3.40.50.620 1 198 6.1E-54 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 337 375 1.6E-12 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 SMART SM00977 333 407 6.2E-6 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Gene3D G3DSA:1.20.59.20 199 282 1.0E-13 T 10-10-2018 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Pfam PF11734 TilS substrate C-terminal domain 335 381 9.6E-8 T 10-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Pfam PF01171 PP-loop family 1 165 2.7E-41 T 10-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 SUPERFAMILY SSF82829 200 282 5.23E-16 T 10-10-2018 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 Pfam PF09179 TilS substrate binding domain 213 279 2.9E-8 T 10-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMQ28_05250 3973cf1cb4cdbbcd829e59e3a71d2c6d 415 SUPERFAMILY SSF56037 300 398 3.66E-12 T 10-10-2018 AMQ28_04745 ac6838927bdec6430cd2dfe0b1b62890 146 Gene3D G3DSA:3.40.630.30 11 145 2.3E-38 T 10-10-2018 AMQ28_04745 ac6838927bdec6430cd2dfe0b1b62890 146 SUPERFAMILY SSF55729 1 141 1.23E-34 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_04745 ac6838927bdec6430cd2dfe0b1b62890 146 Pfam PF13673 Acetyltransferase (GNAT) domain 43 139 2.2E-22 T 10-10-2018 IPR000182 GNAT domain AMQ28_06800 94b338e3be117d956343c21163484e16 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 10-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMQ28_06800 94b338e3be117d956343c21163484e16 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 10-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMQ28_06800 94b338e3be117d956343c21163484e16 469 Gene3D G3DSA:1.10.8.60 310 376 1.3E-22 T 10-10-2018 AMQ28_06800 94b338e3be117d956343c21163484e16 469 SMART SM00382 159 307 5.2E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_06800 94b338e3be117d956343c21163484e16 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 10-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMQ28_06800 94b338e3be117d956343c21163484e16 469 Pfam PF02954 Bacterial regulatory protein, Fis family 422 462 4.8E-14 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_06800 94b338e3be117d956343c21163484e16 469 SUPERFAMILY SSF52172 6 184 4.7E-39 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_06800 94b338e3be117d956343c21163484e16 469 SMART SM00448 5 116 3.2E-31 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_06800 94b338e3be117d956343c21163484e16 469 Gene3D G3DSA:3.40.50.300 125 309 5.4E-61 T 10-10-2018 AMQ28_06800 94b338e3be117d956343c21163484e16 469 Pfam PF00158 Sigma-54 interaction domain 139 305 1.1E-66 T 10-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMQ28_06800 94b338e3be117d956343c21163484e16 469 SUPERFAMILY SSF46689 353 465 1.65E-14 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_06800 94b338e3be117d956343c21163484e16 469 Gene3D G3DSA:1.10.10.60 401 467 5.4E-15 T 10-10-2018 AMQ28_06800 94b338e3be117d956343c21163484e16 469 SUPERFAMILY SSF52540 139 381 2.57E-66 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06800 94b338e3be117d956343c21163484e16 469 Gene3D G3DSA:3.40.50.2300 6 123 2.7E-31 T 10-10-2018 AMQ28_06800 94b338e3be117d956343c21163484e16 469 Pfam PF00072 Response regulator receiver domain 7 116 5.7E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_06800 94b338e3be117d956343c21163484e16 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 445 3.7E-10 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_06800 94b338e3be117d956343c21163484e16 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 445 465 3.7E-10 T 10-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 Gene3D G3DSA:3.40.1010.10 1 111 7.2E-45 T 10-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 204 1.2E-29 T 10-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 Gene3D G3DSA:3.30.950.10 112 232 7.8E-39 T 10-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 4 225 37.098 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 82 93 - T 10-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 PIRSF PIRSF005917 1 278 8.4E-101 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 SUPERFAMILY SSF53790 4 223 1.02E-81 T 10-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMQ28_12540 d2d997dc1893d5a0eded35bef6722e85 279 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 5 273 8.7E-84 T 10-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 Gene3D G3DSA:1.10.10.60 157 256 6.8E-16 T 10-10-2018 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 SUPERFAMILY SSF46689 210 256 3.85E-8 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 Pfam PF12833 Helix-turn-helix domain 186 255 9.1E-16 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 10-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 SMART SM00342 173 255 4.4E-15 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_07070 59c46be564ad4434a0a89b5c70ecd687 257 SUPERFAMILY SSF51215 9 141 1.16E-10 T 10-10-2018 IPR037923 Transcription regulator HTH-like AMQ28_00570 07dd28a726ba5ca01506787835a9a0c0 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 61 9.8E-9 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_00570 07dd28a726ba5ca01506787835a9a0c0 202 Gene3D G3DSA:1.10.357.10 11 178 3.0E-14 T 10-10-2018 AMQ28_00570 07dd28a726ba5ca01506787835a9a0c0 202 SUPERFAMILY SSF46689 4 71 2.05E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00570 07dd28a726ba5ca01506787835a9a0c0 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.5E-5 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_00570 07dd28a726ba5ca01506787835a9a0c0 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.5E-5 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_06415 932c25505beb449370dd58596016e483 145 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 11 142 1.1E-44 T 10-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 AMQ28_06415 932c25505beb449370dd58596016e483 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 4.1E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_06415 932c25505beb449370dd58596016e483 145 Pfam PF08334 Type II secretion system (T2SS), protein G 35 142 1.2E-34 T 10-10-2018 IPR013545 Type II secretion system protein G AMQ28_06415 932c25505beb449370dd58596016e483 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 9.4E-17 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_06415 932c25505beb449370dd58596016e483 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 9.4E-17 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_06415 932c25505beb449370dd58596016e483 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 32 6.5E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_06415 932c25505beb449370dd58596016e483 145 Gene3D G3DSA:3.30.700.10 35 143 2.1E-30 T 10-10-2018 AMQ28_06415 932c25505beb449370dd58596016e483 145 SUPERFAMILY SSF54523 39 143 3.56E-26 T 10-10-2018 AMQ28_06415 932c25505beb449370dd58596016e483 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 Gene3D G3DSA:3.30.450.90 172 307 6.2E-42 T 10-10-2018 AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 Gene3D G3DSA:3.40.50.300 311 583 2.5E-102 T 10-10-2018 AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 SUPERFAMILY SSF160246 43 160 1.1E-8 T 10-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 SMART SM00382 335 477 0.0035 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 63 162 1.1E-12 T 10-10-2018 IPR007831 General secretory system II, protein E, N-terminal AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 SUPERFAMILY SSF52540 193 582 7.52E-94 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 Pfam PF00437 Type II/IV secretion system protein 214 474 6.1E-77 T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_02550 fc8af01d546a3b05840c33aa12a78f17 585 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 402 416 - T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 12 797 0.0 T 10-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 409 430 - T 10-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Pfam PF01011 PQQ enzyme repeat 360 393 7.7E-6 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Pfam PF01011 PQQ enzyme repeat 444 473 2.2E-6 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Pfam PF01011 PQQ enzyme repeat 223 258 3.1E-6 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Pfam PF01011 PQQ enzyme repeat 726 763 8.2E-7 T 10-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SMART SM00564 344 385 0.016 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SMART SM00564 218 249 2.4E-7 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SMART SM00564 414 463 120.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SMART SM00564 287 319 350.0 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SMART SM00564 720 753 7.6 T 10-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 SUPERFAMILY SSF50998 161 797 9.29E-155 T 10-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Gene3D G3DSA:2.140.10.10 563 798 1.6E-42 T 10-10-2018 AMQ28_04710 1cd47f020a79684b2798429a4ef0333e 800 Gene3D G3DSA:2.140.10.10 160 562 8.0E-115 T 10-10-2018 AMQ28_08140 74b9c4198dc6fb720562c8ee1916a626 175 Pfam PF00156 Phosphoribosyl transferase domain 14 160 6.4E-24 T 10-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMQ28_08140 74b9c4198dc6fb720562c8ee1916a626 175 SUPERFAMILY SSF53271 4 173 3.67E-51 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_08140 74b9c4198dc6fb720562c8ee1916a626 175 Gene3D G3DSA:3.40.50.2020 1 175 1.8E-61 T 10-10-2018 AMQ28_08140 74b9c4198dc6fb720562c8ee1916a626 175 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 7.1E-67 T 10-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 451 3.6E-113 T 10-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 Pfam PF13180 PDZ domain 225 285 7.9E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 Pfam PF13180 PDZ domain 124 194 8.5E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 Gene3D G3DSA:2.30.42.10 127 218 5.5E-22 T 10-10-2018 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 SUPERFAMILY SSF50156 89 195 2.89E-13 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 SMART SM00228 209 278 2.0E-7 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 SMART SM00228 116 185 0.1 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 Gene3D G3DSA:2.30.42.10 220 306 3.1E-15 T 10-10-2018 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 SUPERFAMILY SSF50156 206 289 8.68E-15 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_13845 66906953d3dad9aa320f5367190b04db 451 Pfam PF02163 Peptidase family M50 10 436 1.5E-77 T 10-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMQ28_11550 74246cfa1d9770b22420bf0d10d57814 107 Pfam PF03658 RnfH family Ubiquitin 6 86 5.2E-22 T 10-10-2018 IPR005346 RnfH protein AMQ28_11550 74246cfa1d9770b22420bf0d10d57814 107 Hamap MF_00460 Protein RnfH [rnfH]. 5 94 17.692 T 10-10-2018 IPR005346 RnfH protein AMQ28_11550 74246cfa1d9770b22420bf0d10d57814 107 SUPERFAMILY SSF54285 5 78 8.63E-16 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMQ28_11550 74246cfa1d9770b22420bf0d10d57814 107 Gene3D G3DSA:3.10.20.280 1 88 5.7E-22 T 10-10-2018 IPR037021 RnfH superfamily AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 SUPERFAMILY SSF52317 1 193 3.67E-53 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 Pfam PF00117 Glutamine amidotransferase class-I 4 190 9.3E-53 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 Gene3D G3DSA:3.40.50.880 1 194 1.7E-59 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 169 182 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.0E-34 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 9.4E-81 T 10-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 5.8E-5 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 5.8E-5 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 5.4E-13 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 5.4E-13 T 10-10-2018 AMQ28_12755 2debc41baf2628e2f48de9f41bf9d04c 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 5.4E-13 T 10-10-2018 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Gene3D G3DSA:3.90.1310.10 58 139 7.6E-11 T 10-10-2018 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Gene3D G3DSA:3.90.1310.10 157 263 1.0E-30 T 10-10-2018 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Gene3D G3DSA:3.30.450.330 264 591 1.4E-122 T 10-10-2018 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Gene3D G3DSA:3.40.710.10 325 507 1.4E-122 T 10-10-2018 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 SUPERFAMILY SSF56601 214 601 6.42E-90 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Pfam PF03717 Penicillin-binding Protein dimerisation domain 72 244 7.1E-20 T 10-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Pfam PF00905 Penicillin binding protein transpeptidase domain 289 587 8.9E-76 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 SUPERFAMILY SSF56519 68 262 6.54E-37 T 10-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMQ28_09690 9d412440388f8d3f0bcdb5be4e8e09fd 607 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 24 602 41.067 T 10-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 7.3E-19 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 Gene3D G3DSA:3.30.300.310 463 559 3.5E-32 T 10-10-2018 AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 Gene3D G3DSA:3.40.50.12780 13 462 3.0E-115 T 10-10-2018 AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 Pfam PF00501 AMP-binding enzyme 31 466 4.5E-109 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 SUPERFAMILY SSF56801 20 557 4.45E-150 T 10-10-2018 AMQ28_06920 7f1a85bd328d4dd0d2af6348a849f0f4 559 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_08345 db34f318036707952e2ec37c88d15dfe 219 Gene3D G3DSA:1.10.10.60 1 52 4.5E-24 T 10-10-2018 AMQ28_08345 db34f318036707952e2ec37c88d15dfe 219 Gene3D G3DSA:1.10.357.10 53 217 1.1E-35 T 10-10-2018 AMQ28_08345 db34f318036707952e2ec37c88d15dfe 219 SUPERFAMILY SSF46689 2 75 4.71E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_08345 db34f318036707952e2ec37c88d15dfe 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 1.1E-5 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_09450 fcbfd1e5a5e5f115fd255091037ef3d7 470 Pfam PF03553 Na+/H+ antiporter family 150 464 3.6E-65 T 10-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AMQ28_09450 fcbfd1e5a5e5f115fd255091037ef3d7 470 Pfam PF13726 Na+-H+ antiporter family 2 88 1.5E-32 T 10-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal AMQ28_09450 fcbfd1e5a5e5f115fd255091037ef3d7 470 PRINTS PR00173 Glutamate-aspartate symporter signature 403 422 2.2E-5 T 10-10-2018 AMQ28_09450 fcbfd1e5a5e5f115fd255091037ef3d7 470 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.2E-5 T 10-10-2018 AMQ28_12905 25a4000ba04b3c9c700c0b672d30d8a1 311 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_12905 25a4000ba04b3c9c700c0b672d30d8a1 311 Pfam PF00005 ABC transporter 21 165 2.2E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_12905 25a4000ba04b3c9c700c0b672d30d8a1 311 SUPERFAMILY SSF52540 4 227 2.24E-61 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12905 25a4000ba04b3c9c700c0b672d30d8a1 311 SMART SM00382 30 213 3.6E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_12905 25a4000ba04b3c9c700c0b672d30d8a1 311 Gene3D G3DSA:3.40.50.300 1 237 1.2E-62 T 10-10-2018 AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 Pfam PF00501 AMP-binding enzyme 51 477 3.7E-61 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 Gene3D G3DSA:3.30.300.30 474 582 4.2E-14 T 10-10-2018 AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 565 7.0E-9 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 Gene3D G3DSA:3.40.50.12780 43 473 8.7E-61 T 10-10-2018 AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 SUPERFAMILY SSF56801 50 577 2.09E-95 T 10-10-2018 AMQ28_06250 379a025ed41545f53b5a2ebff23e8de6 613 ProSitePatterns PS00455 Putative AMP-binding domain signature. 218 229 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_05070 577302e9de7b06c4812828ce233a3c7d 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 267 17.377 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMQ28_05070 577302e9de7b06c4812828ce233a3c7d 274 Pfam PF02673 Bacitracin resistance protein BacA 9 261 2.3E-80 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMQ28_05070 577302e9de7b06c4812828ce233a3c7d 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 3.4E-72 T 10-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 SUPERFAMILY SSF118215 8 412 1.29E-122 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 1.6E-51 T 10-10-2018 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 45.006 T 10-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 Gene3D G3DSA:1.10.3860.10 1 429 1.6E-135 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 3.5E-115 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_03285 bcf3c8fe600762f9bfbf82cf1a9740db 431 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 10-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMQ28_11855 f002137f1f6fc4f3fb2ef01d070d036b 395 ProSitePatterns PS01219 Ammonium transporters signature. 152 177 - T 10-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMQ28_11855 f002137f1f6fc4f3fb2ef01d070d036b 395 SUPERFAMILY SSF111352 2 370 2.35E-92 T 10-10-2018 AMQ28_11855 f002137f1f6fc4f3fb2ef01d070d036b 395 Gene3D G3DSA:1.10.3430.10 1 394 5.2E-96 T 10-10-2018 IPR029020 Ammonium/urea transporter AMQ28_11855 f002137f1f6fc4f3fb2ef01d070d036b 395 Pfam PF00909 Ammonium Transporter Family 8 386 5.7E-84 T 10-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 2.7E-9 T 10-10-2018 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 2.7E-9 T 10-10-2018 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 206 224 2.7E-9 T 10-10-2018 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 2.7E-9 T 10-10-2018 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 2.7E-9 T 10-10-2018 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 Pfam PF07690 Major Facilitator Superfamily 22 412 1.8E-45 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 SUPERFAMILY SSF103473 9 461 4.05E-65 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_06965 96258b33bf80d49aa8c93f4bf1a38fbc 463 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 422 2.5E-75 T 10-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMQ28_05575 6a627b0b900500af9ebf498020c66625 197 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 1.2E-74 T 10-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMQ28_05575 6a627b0b900500af9ebf498020c66625 197 Gene3D G3DSA:3.40.50.150 2 172 6.2E-26 T 10-10-2018 AMQ28_05575 6a627b0b900500af9ebf498020c66625 197 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 195 6.2E-79 T 10-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 AMQ28_05575 6a627b0b900500af9ebf498020c66625 197 SUPERFAMILY SSF53335 11 171 6.18E-29 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 SUPERFAMILY SSF53067 2 135 3.5E-10 T 10-10-2018 AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 Pfam PF05134 Type II secretion system (T2SS), protein L 40 195 9.6E-10 T 10-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 Pfam PF12693 GspL periplasmic domain 232 368 2.8E-12 T 10-10-2018 IPR025691 GspL periplasmic domain AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 Gene3D G3DSA:3.30.420.380 25 220 2.8E-13 T 10-10-2018 AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 PIRSF PIRSF015761 13 379 3.8E-15 T 10-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 Gene3D G3DSA:3.30.420.370 132 203 2.8E-13 T 10-10-2018 AMQ28_02230 aa0e61b484dd6842e702e7ca50273aa1 379 Gene3D G3DSA:3.30.1360.100 299 379 2.0E-7 T 10-10-2018 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 Pfam PF00155 Aminotransferase class I and II 27 393 8.6E-77 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 SUPERFAMILY SSF53383 1 398 2.24E-108 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 Gene3D G3DSA:3.40.640.10 60 301 5.7E-148 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 PRINTS PR00799 Aspartate aminotransferase signature 176 195 4.5E-35 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 PRINTS PR00799 Aspartate aminotransferase signature 342 360 4.5E-35 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 PRINTS PR00799 Aspartate aminotransferase signature 207 219 4.5E-35 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 PRINTS PR00799 Aspartate aminotransferase signature 274 299 4.5E-35 T 10-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 10-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMQ28_00450 30f23e64d400038a1c3f42a8ad4bfbe8 406 Gene3D G3DSA:3.90.1150.10 11 392 5.7E-148 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 SUPERFAMILY SSF54211 603 795 7.21E-33 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 689 795 3.2E-10 T 10-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Gene3D G3DSA:3.30.230.10 582 819 7.1E-91 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Pfam PF13654 AAA domain 64 579 1.6E-168 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 716 735 9.2E-11 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 100 119 9.2E-11 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 686 705 9.2E-11 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 746 764 9.2E-11 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 SUPERFAMILY SSF52540 67 594 2.38E-6 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Gene3D G3DSA:1.10.8.60 489 576 8.6E-13 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Gene3D G3DSA:3.40.50.300 273 488 1.9E-54 T 10-10-2018 AMQ28_02690 92776c205abb5b2d4618204bbe5560c5 877 Gene3D G3DSA:3.40.50.300 45 228 8.5E-29 T 10-10-2018 AMQ28_12365 a0cf31692b74995ddda30c87f6376438 163 Pfam PF04170 NlpE N-terminal domain 66 145 1.5E-21 T 10-10-2018 IPR007298 Copper resistance lipoprotein NlpE AMQ28_12365 a0cf31692b74995ddda30c87f6376438 163 Gene3D G3DSA:2.40.128.640 53 162 3.3E-30 T 10-10-2018 AMQ28_13540 61fdef0ae7b0cb72839094e41a40c2fb 331 SUPERFAMILY SSF53850 8 259 1.27E-19 T 10-10-2018 AMQ28_13540 61fdef0ae7b0cb72839094e41a40c2fb 331 Gene3D G3DSA:3.40.190.10 11 324 1.4E-80 T 10-10-2018 AMQ28_13540 61fdef0ae7b0cb72839094e41a40c2fb 331 Pfam PF13379 NMT1-like family 4 245 6.5E-59 T 10-10-2018 AMQ28_13540 61fdef0ae7b0cb72839094e41a40c2fb 331 Gene3D G3DSA:3.40.190.10 95 210 1.4E-80 T 10-10-2018 AMQ28_00485 8f68eb2d16f443c372d22ce29c7687b0 151 Pfam PF01575 MaoC like domain 16 110 3.0E-11 T 10-10-2018 IPR002539 MaoC-like dehydratase domain AMQ28_00485 8f68eb2d16f443c372d22ce29c7687b0 151 Gene3D G3DSA:3.10.129.10 1 148 9.1E-36 T 10-10-2018 AMQ28_00485 8f68eb2d16f443c372d22ce29c7687b0 151 SUPERFAMILY SSF54637 2 145 4.7E-28 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 Pfam PF02576 RimP N-terminal domain 13 103 2.8E-19 T 10-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 SUPERFAMILY SSF75420 3 103 4.18E-19 T 10-10-2018 IPR035956 RimP, N-terminal domain superfamily AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 SUPERFAMILY SSF74942 104 173 1.96E-8 T 10-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 174 20.279 T 10-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 Gene3D G3DSA:3.30.300.70 2 57 2.2E-6 T 10-10-2018 IPR035956 RimP, N-terminal domain superfamily AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 Gene3D G3DSA:3.30.300.70 60 100 3.6E-10 T 10-10-2018 IPR035956 RimP, N-terminal domain superfamily AMQ28_06585 6042faf97d05c9421fb148d25f71151f 174 Pfam PF17384 RimP C-terminal SH3 domain 115 172 2.4E-9 T 10-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 Pfam PF00005 ABC transporter 77 232 2.6E-29 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 Gene3D G3DSA:3.40.50.300 58 306 1.0E-61 T 10-10-2018 AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 ProSitePatterns PS00211 ABC transporters family signature. 205 219 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 SMART SM00382 85 280 1.3E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 61 308 2.1E-121 T 10-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMQ28_02775 3f37fb9345f12c08821b033cc1e38bf9 308 SUPERFAMILY SSF52540 61 296 1.92E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03220 b418828102cd9515d8e76ba46474299a 318 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 285 1.1E-40 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_03220 b418828102cd9515d8e76ba46474299a 318 PIRSF PIRSF026649 2 293 2.6E-65 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 Gene3D G3DSA:4.10.860.20 180 227 1.6E-20 T 10-10-2018 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 SUPERFAMILY SSF51197 4 169 3.85E-7 T 10-10-2018 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 Gene3D G3DSA:2.60.120.620 1 178 3.4E-43 T 10-10-2018 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 SMART SM00702 2 177 1.9E-23 T 10-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 45.179 T 10-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 AMQ28_05545 4d089634a6532f0e1b4a50e258d70246 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 1.5E-13 T 10-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 SUPERFAMILY SSF56931 117 382 1.7E-91 T 10-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 Gene3D G3DSA:2.40.230.10 122 382 3.0E-89 T 10-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 329 346 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 168 185 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 293 311 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 258 276 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 190 206 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 213 232 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 243 257 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 PRINTS PR01486 Bacterial phospholipase A1 protein signature 351 371 1.1E-36 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_14150 42271e94f386e07c38eed83146f939bb 382 Pfam PF02253 Phospholipase A1 116 378 6.7E-106 T 10-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AMQ28_04400 56ef49c2e22800bb9119aad1e2e9214f 165 Pfam PF03061 Thioesterase superfamily 68 154 1.8E-12 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_04400 56ef49c2e22800bb9119aad1e2e9214f 165 SUPERFAMILY SSF54637 25 163 1.75E-19 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_04400 56ef49c2e22800bb9119aad1e2e9214f 165 Gene3D G3DSA:3.10.129.10 8 165 4.0E-39 T 10-10-2018 AMQ28_04400 56ef49c2e22800bb9119aad1e2e9214f 165 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 45 160 3.0E-12 T 10-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 323 1.7E-75 T 10-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 319 1.0E-111 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 229 235 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 SUPERFAMILY SSF53335 21 319 5.32E-45 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 Pfam PF05175 Methyltransferase small domain 156 249 2.7E-17 T 10-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 11 325 48.946 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 Gene3D G3DSA:3.40.50.150 109 306 2.1E-47 T 10-10-2018 AMQ28_00230 67fc03541ec10b4fe0ff38b77b5b2ff5 336 PIRSF PIRSF037167 5 332 9.2E-135 T 10-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AMQ28_11765 ec50c0dd44a8f22fe5d230c6107b60d6 432 Pfam PF07690 Major Facilitator Superfamily 32 378 4.6E-31 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_11765 ec50c0dd44a8f22fe5d230c6107b60d6 432 SUPERFAMILY SSF103473 17 421 7.98E-61 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11765 ec50c0dd44a8f22fe5d230c6107b60d6 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_11765 ec50c0dd44a8f22fe5d230c6107b60d6 432 Gene3D G3DSA:1.20.1250.20 20 432 5.8E-65 T 10-10-2018 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.56 T 10-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 SUPERFAMILY SSF54211 1 181 2.02E-46 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 224 9.1E-11 T 10-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 10-10-2018 IPR018336 Ribonuclease PH, conserved site AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 SUPERFAMILY SSF55666 154 236 5.63E-25 T 10-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 2.5E-117 T 10-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 6.0E-24 T 10-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_08360 9ffe0e38493b8d40ca9f5d3e1bd3d0c6 238 Gene3D G3DSA:3.30.230.70 10 237 7.5E-65 T 10-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMQ28_03570 c00d3916b49144137c7e3d0e0d1b0bdd 434 Pfam PF01609 Transposase DDE domain 125 347 9.0E-22 T 10-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMQ28_03570 c00d3916b49144137c7e3d0e0d1b0bdd 434 SUPERFAMILY SSF53098 89 384 3.19E-22 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_03570 c00d3916b49144137c7e3d0e0d1b0bdd 434 Pfam PF13006 Insertion element 4 transposase N-terminal 17 105 6.8E-25 T 10-10-2018 IPR024473 Transposase, IS4, N-terminal AMQ28_11090 8ad5288ad60c2a6e09d3eed510529ef0 350 SMART SM00342 256 337 1.5E-16 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_11090 8ad5288ad60c2a6e09d3eed510529ef0 350 SUPERFAMILY SSF46689 292 340 5.82E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_11090 8ad5288ad60c2a6e09d3eed510529ef0 350 Gene3D G3DSA:1.10.10.60 237 343 1.5E-18 T 10-10-2018 AMQ28_11090 8ad5288ad60c2a6e09d3eed510529ef0 350 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 49 209 2.1E-19 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_11090 8ad5288ad60c2a6e09d3eed510529ef0 350 Pfam PF12833 Helix-turn-helix domain 262 332 4.8E-15 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_05150 23e4c08597747e85734ac17cb99abcb8 83 PIRSF PIRSF003113 1 82 2.4E-20 T 10-10-2018 IPR002634 BolA protein AMQ28_05150 23e4c08597747e85734ac17cb99abcb8 83 Pfam PF01722 BolA-like protein 21 74 2.5E-12 T 10-10-2018 IPR002634 BolA protein AMQ28_05150 23e4c08597747e85734ac17cb99abcb8 83 Gene3D G3DSA:3.30.300.90 1 82 4.2E-26 T 10-10-2018 AMQ28_05150 23e4c08597747e85734ac17cb99abcb8 83 SUPERFAMILY SSF82657 2 78 1.83E-23 T 10-10-2018 IPR036065 BolA-like superfamily AMQ28_10555 b2a8549c7628e0911baa5792ba820031 111 Gene3D G3DSA:3.90.190.10 1 110 8.1E-29 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_10555 b2a8549c7628e0911baa5792ba820031 111 Pfam PF04273 Putative phosphatase (DUF442) 2 106 1.6E-31 T 10-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMQ28_10555 b2a8549c7628e0911baa5792ba820031 111 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 105 7.5E-27 T 10-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 9.1E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 9.1E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 9.1E-13 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 165 2.7E-48 T 10-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 Gene3D G3DSA:2.40.100.10 3 167 5.4E-65 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 SUPERFAMILY SSF50891 6 167 8.04E-58 T 10-10-2018 IPR029000 Cyclophilin-like domain superfamily AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 40 57 - T 10-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMQ28_13975 532e991d4fb4bb4e0811abd8eeb1a69d 169 PIRSF PIRSF001467 1 169 2.9E-28 T 10-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 343 1.7E-117 T 10-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 PIRSF PIRSF000854 2 792 0.0 T 10-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 10-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 9.4E-26 T 10-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Gene3D G3DSA:3.30.470.20 193 356 6.6E-58 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 SUPERFAMILY SSF56059 4 383 1.06E-103 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 780 3.2E-64 T 10-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 SUPERFAMILY SSF52009 347 466 1.15E-34 T 10-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Gene3D G3DSA:3.20.20.60 477 788 5.6E-105 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 785 0.0 T 10-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Gene3D G3DSA:3.30.1490.20 2 192 3.0E-70 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 SUPERFAMILY SSF51621 460 788 1.2E-100 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 Gene3D G3DSA:3.50.30.10 357 476 1.1E-41 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 1.9E-5 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 1.9E-5 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 1.9E-5 T 10-10-2018 AMQ28_01370 7ee00e8072d4596a4e02250713a3efb8 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 10-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMQ28_10810 934279df53d758523c45553723e50f67 262 Pfam PF01261 Xylose isomerase-like TIM barrel 21 210 5.6E-24 T 10-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMQ28_10810 934279df53d758523c45553723e50f67 262 Gene3D G3DSA:3.20.20.150 1 261 8.5E-62 T 10-10-2018 AMQ28_10810 934279df53d758523c45553723e50f67 262 SUPERFAMILY SSF51658 1 257 3.04E-66 T 10-10-2018 IPR036237 Xylose isomerase-like superfamily AMQ28_10810 934279df53d758523c45553723e50f67 262 PIRSF PIRSF006241 1 261 6.4E-90 T 10-10-2018 IPR026040 Hydroxypyruvate isomerase-like AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 Pfam PF11612 Type II secretion system (T2SS), protein J 60 193 7.4E-17 T 10-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 3.9E-8 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 6 187 2.5E-20 T 10-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 SUPERFAMILY SSF54523 38 198 1.49E-21 T 10-10-2018 AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 25 5.8E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01685 c92ac2a3ee40e4c7ac14e0dedd012373 208 Gene3D G3DSA:3.30.700.10 7 178 2.8E-7 T 10-10-2018 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Pfam PF01743 Poly A polymerase head domain 34 159 3.6E-30 T 10-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 6 408 6.6E-117 T 10-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Pfam PF12626 Polymerase A arginine-rich C-terminus 296 408 4.7E-26 T 10-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 3 443 33.439 T 10-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 186 247 1.2E-11 T 10-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 SUPERFAMILY SSF81891 157 374 4.84E-39 T 10-10-2018 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Gene3D G3DSA:1.10.3090.10 157 399 1.3E-65 T 10-10-2018 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 Gene3D G3DSA:3.30.460.10 2 155 2.8E-47 T 10-10-2018 AMQ28_05720 59fe2dcac43e8df55fc02e8b041f17e3 487 SUPERFAMILY SSF81301 10 156 9.59E-36 T 10-10-2018 AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 Gene3D G3DSA:2.40.170.20 163 687 1.7E-50 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 Gene3D G3DSA:2.170.130.10 57 159 5.2E-11 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 55 687 6.7E-219 T 10-10-2018 IPR010100 TonB-dependent copper receptor AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 150 9.9E-12 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 SUPERFAMILY SSF56935 57 687 4.76E-75 T 10-10-2018 AMQ28_07035 da553b0c77f815b3e6a61e770524f038 687 Pfam PF00593 TonB dependent receptor 207 686 1.0E-30 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 SUPERFAMILY SSF51690 114 279 4.71E-59 T 10-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 16 279 8.8E-96 T 10-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 SUPERFAMILY SSF54675 7 112 2.28E-31 T 10-10-2018 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 278 1.6E-58 T 10-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 Gene3D G3DSA:3.20.20.70 123 269 1.8E-111 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 24 112 5.9E-26 T 10-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 PIRSF PIRSF006250 6 281 2.8E-97 T 10-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMQ28_08365 eb30a6672070712373ca8274ae1fc1ee 281 Gene3D G3DSA:3.90.1170.20 10 278 1.8E-111 T 10-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 Pfam PF00347 Ribosomal protein L6 90 164 1.7E-17 T 10-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 Pfam PF00347 Ribosomal protein L6 11 82 8.5E-16 T 10-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 Gene3D G3DSA:3.90.930.12 1 82 2.2E-26 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 SUPERFAMILY SSF56053 83 177 7.19E-34 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 PIRSF PIRSF002162 1 177 5.3E-44 T 10-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 5.7E-71 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 10-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.4E-32 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.4E-32 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.4E-32 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 SUPERFAMILY SSF56053 1 82 9.28E-23 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 34.826 T 10-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_10260 10a1f53574bd238de3660a7eb452aed8 177 Gene3D G3DSA:3.90.930.12 83 177 7.7E-37 T 10-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 8.4E-21 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 Pfam PF00444 Ribosomal protein L36 1 38 2.5E-19 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 SUPERFAMILY SSF57840 1 38 1.11E-16 T 10-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 10-10-2018 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10290 ca856236dc39419630b3c2e5826989ea 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.47 T 10-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 PIRSF PIRSF000303 1 181 3.7E-59 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 SUPERFAMILY SSF52833 4 177 4.39E-53 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 7.7E-18 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 PRINTS PR01011 Glutathione peroxidase family signature 23 40 7.7E-18 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 PRINTS PR01011 Glutathione peroxidase family signature 58 74 7.7E-18 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 Gene3D G3DSA:3.40.30.10 1 181 3.4E-60 T 10-10-2018 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 Pfam PF00255 Glutathione peroxidase 5 111 3.5E-38 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_07080 4d3d6d38850368ac311d17c01328beb4 181 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 10-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 398 8.9E-82 T 10-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 398 2.8E-171 T 10-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 SUPERFAMILY SSF54675 2 139 9.62E-41 T 10-10-2018 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 399 47.053 T 10-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 PIRSF PIRSF000484 1 398 1.3E-77 T 10-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 Gene3D G3DSA:3.20.140.10 1 401 7.7E-148 T 10-10-2018 AMQ28_08445 89224ca777a3cdbb676bb125c84979d2 401 SUPERFAMILY SSF51690 121 397 8.24E-89 T 10-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 10 337 35.889 T 10-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 SUPERFAMILY SSF102114 11 279 1.03E-65 T 10-10-2018 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 Pfam PF06463 Molybdenum Cofactor Synthesis C 190 317 4.8E-29 T 10-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 Gene3D G3DSA:3.20.20.70 9 337 2.4E-82 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 11 337 2.0E-109 T 10-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 Pfam PF13353 4Fe-4S single cluster domain 26 129 8.4E-10 T 10-10-2018 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 SMART SM00729 19 222 1.5E-7 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_03510 298ea5e2b85db3f013080930247464c1 337 Pfam PF04055 Radical SAM superfamily 23 179 1.7E-25 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 SUPERFAMILY SSF51344 3 85 2.62E-25 T 10-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 Gene3D G3DSA:2.60.15.10 2 89 7.8E-29 T 10-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 5.4E-29 T 10-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 Gene3D G3DSA:1.20.5.440 90 132 2.9E-7 T 10-10-2018 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 131 2.2E-39 T 10-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 SUPERFAMILY SSF46604 87 135 2.12E-10 T 10-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 19.329 T 10-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07105 1577f35057dac031e6bab0265b03748b 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 17 89 4.0E-31 T 10-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_00785 65cee370dbe44196784c5dc0b511940b 180 SUPERFAMILY SSF52499 2 179 4.58E-48 T 10-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMQ28_00785 65cee370dbe44196784c5dc0b511940b 180 Pfam PF00857 Isochorismatase family 4 176 1.3E-35 T 10-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMQ28_00785 65cee370dbe44196784c5dc0b511940b 180 Gene3D G3DSA:3.40.50.850 1 180 3.9E-49 T 10-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 Gene3D G3DSA:3.60.110.10 1 260 4.7E-104 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 SUPERFAMILY SSF52402 256 523 1.96E-77 T 10-10-2018 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 Pfam PF00795 Carbon-nitrogen hydrolase 5 240 9.4E-31 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 SUPERFAMILY SSF56317 1 240 8.37E-61 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 PIRSF PIRSF006630 1 540 8.3E-204 T 10-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 4 539 28.134 T 10-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 Gene3D G3DSA:3.40.50.620 261 540 4.6E-110 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 TIGRFAM TIGR00552 nadE: NAD+ synthetase 270 513 3.9E-59 T 10-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMQ28_12185 1072cec200f23f9fc3182eba7ca0068e 541 Pfam PF02540 NAD synthase 265 513 1.3E-72 T 10-10-2018 IPR022310 NAD/GMP synthase AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 Pfam PF05683 Fumarase C-terminus 289 488 5.0E-77 T 10-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 Gene3D G3DSA:3.20.130.10 281 487 3.1E-60 T 10-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 486 2.2E-48 T 10-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 Pfam PF05681 Fumarate hydratase (Fumerase) 13 285 5.5E-102 T 10-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 PIRSF PIRSF001394 1 505 4.2E-211 T 10-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 14 285 2.0E-68 T 10-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMQ28_05500 1349d6b6e2369dcff942e4026df78ad9 508 SUPERFAMILY SSF117457 317 486 7.85E-64 T 10-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMQ28_02635 b2ddeff02cfd36ed3751f7894d5ebe86 316 Gene3D G3DSA:1.10.8.300 218 315 1.8E-22 T 10-10-2018 AMQ28_02635 b2ddeff02cfd36ed3751f7894d5ebe86 316 PIRSF PIRSF002849 1 315 5.0E-115 T 10-10-2018 AMQ28_02635 b2ddeff02cfd36ed3751f7894d5ebe86 316 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 57 187 1.9E-58 T 10-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMQ28_02635 b2ddeff02cfd36ed3751f7894d5ebe86 316 SUPERFAMILY SSF52540 44 300 6.22E-38 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02635 b2ddeff02cfd36ed3751f7894d5ebe86 316 Gene3D G3DSA:3.40.50.300 38 203 2.7E-40 T 10-10-2018 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 SUPERFAMILY SSF53223 2 101 1.9E-30 T 10-10-2018 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 Gene3D G3DSA:3.40.50.720 115 234 2.1E-75 T 10-10-2018 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 117 194 4.2E-12 T 10-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMQ28_10040 91a75c704031f382644a4d3160091bca 262 SUPERFAMILY SSF51735 102 259 1.97E-34 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10040 91a75c704031f382644a4d3160091bca 262 Gene3D G3DSA:3.40.50.10860 5 253 2.1E-75 T 10-10-2018 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.0E-22 T 10-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 260 29.522 T 10-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMQ28_10040 91a75c704031f382644a4d3160091bca 262 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 259 1.7E-75 T 10-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 173 197 - T 10-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 Pfam PF01218 Coproporphyrinogen III oxidase 11 309 1.0E-120 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 Gene3D G3DSA:3.40.1500.10 1 313 6.0E-137 T 10-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 SUPERFAMILY SSF102886 7 309 6.8E-126 T 10-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 269 295 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 38 54 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 132 154 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 241 268 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 169 198 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 97 121 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PRINTS PR00073 Coprogen oxidase signature 55 76 2.4E-75 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 PIRSF PIRSF000166 1 310 2.9E-121 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_10050 b477472a73d6958955025781221f4ba7 313 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 6 284 50.192 T 10-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 Gene3D G3DSA:3.30.1490.20 102 172 2.7E-26 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 SUPERFAMILY SSF52440 3 96 7.48E-17 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 Pfam PF02222 ATP-grasp domain 106 275 5.7E-56 T 10-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 4 347 39.425 T 10-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 Gene3D G3DSA:3.30.470.20 173 371 7.5E-72 T 10-10-2018 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 SUPERFAMILY SSF56059 97 295 1.43E-62 T 10-10-2018 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 Gene3D G3DSA:3.40.50.20 1 101 7.8E-26 T 10-10-2018 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 SUPERFAMILY SSF51246 299 364 1.1E-16 T 10-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMQ28_08180 ac0ce5ebbb156edec9ceaaf6faf6ac5d 373 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 350 2.9E-113 T 10-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 Pfam PF07664 Ferrous iron transport protein B C terminus 394 446 2.4E-14 T 10-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 3.1E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 3.1E-6 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 Pfam PF07670 Nucleoside recognition 283 374 1.3E-11 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 Pfam PF07670 Nucleoside recognition 451 588 5.9E-25 T 10-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 Pfam PF02421 Ferrous iron transport protein B 6 165 9.7E-57 T 10-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 Gene3D G3DSA:3.40.50.300 5 206 2.8E-44 T 10-10-2018 AMQ28_06755 e19dfd6779b3ca39aafc6c7dc52f25c5 618 SUPERFAMILY SSF52540 5 171 1.26E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 422 1.7E-145 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 PIRSF PIRSF001434 1 425 1.3E-134 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 SUPERFAMILY SSF53383 4 423 3.99E-130 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 Gene3D G3DSA:3.90.1150.10 291 425 1.9E-53 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 5 423 8.7E-202 T 10-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 Gene3D G3DSA:3.40.640.10 4 287 4.8E-104 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_09540 de6e7af7a70fa3722903f64ee95a6178 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 SUPERFAMILY SSF55347 136 301 4.51E-53 T 10-10-2018 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 182 204 - T 10-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Pfam PF00742 Homoserine dehydrogenase 136 314 1.9E-64 T 10-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Gene3D G3DSA:3.30.70.260 348 420 8.3E-160 T 10-10-2018 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Gene3D G3DSA:3.40.50.720 4 339 8.3E-160 T 10-10-2018 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 128 4.1E-18 T 10-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 PIRSF PIRSF000098 1 432 2.7E-160 T 10-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 SUPERFAMILY SSF55021 351 421 5.39E-12 T 10-10-2018 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Gene3D G3DSA:3.30.360.10 135 347 8.3E-160 T 10-10-2018 AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 SUPERFAMILY SSF51735 2 157 2.09E-33 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_06775 e9e242fa7a2d957d901631192d387491 434 Pfam PF01842 ACT domain 353 418 6.5E-13 T 10-10-2018 IPR002912 ACT domain AMQ28_06100 e33aa3bf21bb4f06b82a663b18710b3b 83 Pfam PF09834 Predicted membrane protein (DUF2061) 16 66 2.3E-17 T 10-10-2018 IPR018638 Domain of unknown function DUF2061, membrane AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 Gene3D G3DSA:1.10.101.10 138 200 8.4E-10 T 10-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 SUPERFAMILY SSF47090 142 191 2.2E-11 T 10-10-2018 IPR036365 PGBD-like superfamily AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 Gene3D G3DSA:2.40.440.10 223 414 2.2E-43 T 10-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 SUPERFAMILY SSF141523 282 410 4.05E-27 T 10-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 Pfam PF01471 Putative peptidoglycan binding domain 145 190 1.6E-9 T 10-10-2018 IPR002477 Peptidoglycan binding-like AMQ28_12705 bc692bb5f0d2d17c4df52816acccb8d3 414 Pfam PF03734 L,D-transpeptidase catalytic domain 282 409 4.7E-18 T 10-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMQ28_04340 d6cd24af08d9edf07d0ba9bb985e846f 88 Pfam PF00436 Single-strand binding protein family 3 88 1.9E-25 T 10-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMQ28_04340 d6cd24af08d9edf07d0ba9bb985e846f 88 SUPERFAMILY SSF50249 3 88 1.03E-28 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_04340 d6cd24af08d9edf07d0ba9bb985e846f 88 Gene3D G3DSA:2.40.50.140 2 88 9.7E-29 T 10-10-2018 AMQ28_04340 d6cd24af08d9edf07d0ba9bb985e846f 88 PIRSF PIRSF002070 2 88 3.3E-20 T 10-10-2018 AMQ28_04340 d6cd24af08d9edf07d0ba9bb985e846f 88 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 87 1.4E-30 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 8.0E-11 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 SUPERFAMILY SSF54523 28 143 7.32E-33 T 10-10-2018 AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 Pfam PF00114 Pilin (bacterial filament) 35 142 1.3E-23 T 10-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.0E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09790 9dd8898dc477793676734e6a4fe85312 145 Gene3D G3DSA:3.30.700.10 7 144 3.2E-45 T 10-10-2018 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 SMART SM00155 163 190 0.015 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 SMART SM00155 408 434 0.0012 T 10-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 Gene3D G3DSA:3.30.870.10 255 476 3.6E-34 T 10-10-2018 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 Gene3D G3DSA:3.30.870.10 61 254 7.6E-38 T 10-10-2018 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 Pfam PF13091 PLD-like domain 309 460 6.6E-18 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 Pfam PF13091 PLD-like domain 75 200 1.3E-18 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 SUPERFAMILY SSF56024 277 471 7.4E-28 T 10-10-2018 AMQ28_00440 34d54a20efdb5eb52d1d74fe0aff8efa 517 SUPERFAMILY SSF56024 71 228 2.57E-36 T 10-10-2018 AMQ28_10155 d0362bce1fa65d9aee8161dac1e869f6 147 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 1.7E-25 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type AMQ28_10155 d0362bce1fa65d9aee8161dac1e869f6 147 SUPERFAMILY SSF46785 2 130 5.65E-30 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_10155 d0362bce1fa65d9aee8161dac1e869f6 147 Gene3D G3DSA:1.10.10.10 1 138 3.0E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_10155 d0362bce1fa65d9aee8161dac1e869f6 147 Pfam PF02082 Transcriptional regulator 1 81 3.0E-19 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 23 52 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 147 176 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 442 667 6.3E-68 T 10-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Gene3D G3DSA:2.40.50.100 126 200 6.0E-16 T 10-10-2018 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Gene3D G3DSA:2.40.50.100 2 78 9.0E-18 T 10-10-2018 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 260 289 - T 10-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Gene3D G3DSA:2.40.50.100 237 312 1.1E-19 T 10-10-2018 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Gene3D G3DSA:4.10.320.10 369 412 3.9E-13 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Pfam PF00364 Biotin-requiring enzyme 2 72 1.3E-16 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Pfam PF00364 Biotin-requiring enzyme 126 195 4.0E-15 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Pfam PF00364 Biotin-requiring enzyme 239 309 1.1E-18 T 10-10-2018 IPR000089 Biotin/lipoyl attachment AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 SUPERFAMILY SSF51230 2 89 6.81E-20 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 SUPERFAMILY SSF47005 365 408 7.06E-9 T 10-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 SUPERFAMILY SSF51230 236 326 6.28E-21 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Pfam PF02817 e3 binding domain 369 403 6.8E-11 T 10-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 SUPERFAMILY SSF51230 124 209 3.66E-18 T 10-10-2018 IPR011053 Single hybrid motif AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 SUPERFAMILY SSF52777 431 668 3.51E-72 T 10-10-2018 AMQ28_08660 822eee57cd1ad5c0e607d0c604ea6dbd 668 Gene3D G3DSA:3.30.559.10 425 668 9.2E-78 T 10-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMQ28_08560 e037d8bb37668f5d2ece4ca3e47bfa82 303 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 75 91 - T 10-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 AMQ28_08560 e037d8bb37668f5d2ece4ca3e47bfa82 303 SUPERFAMILY SSF53474 49 297 2.47E-55 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_08560 e037d8bb37668f5d2ece4ca3e47bfa82 303 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 143 155 - T 10-10-2018 IPR033140 Lipase, GDXG, putative serine active site AMQ28_08560 e037d8bb37668f5d2ece4ca3e47bfa82 303 Pfam PF07859 alpha/beta hydrolase fold 75 277 9.4E-57 T 10-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMQ28_08560 e037d8bb37668f5d2ece4ca3e47bfa82 303 Gene3D G3DSA:3.40.50.1820 11 302 1.1E-78 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13515 86c730fa8a2187dfe63cbb6bebedc247 239 Pfam PF00117 Glutamine amidotransferase class-I 26 188 3.8E-18 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_13515 86c730fa8a2187dfe63cbb6bebedc247 239 Gene3D G3DSA:3.40.50.880 5 235 5.0E-53 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_13515 86c730fa8a2187dfe63cbb6bebedc247 239 SUPERFAMILY SSF52317 56 236 3.36E-46 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 Gene3D G3DSA:3.40.1010.20 6 283 4.5E-113 T 10-10-2018 AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.402 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 2.2E-100 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 Pfam PF02401 LytB protein 3 283 4.4E-95 T 10-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 Gene3D G3DSA:3.40.1010.20 97 197 4.5E-113 T 10-10-2018 AMQ28_09840 a3f0efb104c8bcb947aad1d7d75de685 316 Gene3D G3DSA:3.40.50.11270 12 96 4.5E-113 T 10-10-2018 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 Pfam PF00202 Aminotransferase class-III 27 422 1.1E-128 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 423 1.8E-181 T 10-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 Gene3D G3DSA:3.90.1150.10 12 416 2.1E-165 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 SUPERFAMILY SSF53383 5 423 1.96E-129 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 PIRSF PIRSF000521 22 139 9.0E-8 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 PIRSF PIRSF000521 177 425 2.0E-22 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 426 49.539 T 10-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_04855 778d1e5cf32ec01af2e154493425a1c5 431 Gene3D G3DSA:3.40.640.10 62 332 2.1E-165 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_05935 eebf3de917c4fbd3e4e40299c1aab48b 78 SUPERFAMILY SSF143800 2 77 6.28E-30 T 10-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05935 eebf3de917c4fbd3e4e40299c1aab48b 78 Pfam PF00830 Ribosomal L28 family 3 61 1.5E-26 T 10-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05935 eebf3de917c4fbd3e4e40299c1aab48b 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 9.4E-28 T 10-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_05935 eebf3de917c4fbd3e4e40299c1aab48b 78 Gene3D G3DSA:2.30.170.40 2 78 9.9E-33 T 10-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05935 eebf3de917c4fbd3e4e40299c1aab48b 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.279 T 10-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_07570 a67506f22df52af84827cf6b6beb3383 69 SUPERFAMILY SSF53732 3 40 3.84E-5 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMQ28_07570 a67506f22df52af84827cf6b6beb3383 69 Gene3D G3DSA:3.30.499.10 1 45 9.0E-9 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 SUPERFAMILY SSF50249 4 71 4.0E-29 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 27.121 T 10-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 Gene3D G3DSA:2.40.50.140 2 71 2.0E-37 T 10-10-2018 AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 1.4E-28 T 10-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 SMART SM00316 5 73 1.9E-7 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_06060 b777b9856e859f458e4de8d9ec99eced 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 71 2.3E-38 T 10-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 Pfam PF00210 Ferritin-like domain 8 143 5.7E-34 T 10-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 Gene3D G3DSA:1.20.1260.10 1 154 1.2E-57 T 10-10-2018 IPR012347 Ferritin-like AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 SUPERFAMILY SSF47240 1 154 3.25E-45 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 3 22 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 128 149 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 23 43 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 44 64 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 85 105 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PRINTS PR00601 Bacterioferritin signature 106 126 3.5E-39 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 3.3E-44 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_04870 3d43f1ac39c7f91dce5274ca5849dceb 154 PIRSF PIRSF002560 1 154 2.7E-58 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_05915 bda13833ba0fda4d91aacd94c61dce26 257 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 186 250 1.4E-9 T 10-10-2018 IPR006260 TonB/TolA, C-terminal AMQ28_05915 bda13833ba0fda4d91aacd94c61dce26 257 Gene3D G3DSA:3.30.1150.10 133 254 1.1E-10 T 10-10-2018 AMQ28_05915 bda13833ba0fda4d91aacd94c61dce26 257 SUPERFAMILY SSF74653 140 254 3.53E-16 T 10-10-2018 AMQ28_05915 bda13833ba0fda4d91aacd94c61dce26 257 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 187 250 1.3E-8 T 10-10-2018 IPR037682 TonB, C-terminal GO:0055085 AMQ28_00905 fcd06091efce0d563471eabd2a619e8c 159 Pfam PF03928 Haem-degrading 28 153 1.6E-21 T 10-10-2018 IPR005624 Haem-degrading AMQ28_00905 fcd06091efce0d563471eabd2a619e8c 159 SUPERFAMILY SSF143744 24 155 6.41E-29 T 10-10-2018 IPR038084 GlcG-like domain superfamily AMQ28_00905 fcd06091efce0d563471eabd2a619e8c 159 Gene3D G3DSA:3.30.450.150 28 155 1.3E-29 T 10-10-2018 IPR038084 GlcG-like domain superfamily AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 253 427 1.7E-18 T 10-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 SUPERFAMILY SSF74863 19 128 4.05E-29 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 Gene3D G3DSA:2.60.40.1250 13 142 1.6E-34 T 10-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 Gene3D G3DSA:3.40.30.10 516 644 3.1E-24 T 10-10-2018 AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 SUPERFAMILY SSF52833 528 639 4.15E-17 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 Pfam PF00085 Thioredoxin 531 635 2.8E-8 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 Pfam PF11412 Disulphide bond corrector protein DsbC 21 129 6.0E-28 T 10-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMQ28_07535 a75fe1f8db503901c9a07e60b5b8cde0 645 ProSitePatterns PS00194 Thioredoxin family active site. 549 567 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 1.0E-20 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 2.5E-29 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 64 17.558 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 Gene3D G3DSA:3.30.70.1680 1 59 1.3E-28 T 10-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 Pfam PF02599 Global regulator protein family 1 52 1.1E-26 T 10-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 AMQ28_02415 cb677f1237ac5ac48002dc98c32d1652 87 SUPERFAMILY SSF117130 1 54 3.79E-20 T 10-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 AMQ28_11410 bc8df94d675aad075cb2079824ff0555 150 PIRSF PIRSF004638 1 150 1.0E-49 T 10-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMQ28_11410 bc8df94d675aad075cb2079824ff0555 150 Pfam PF03653 Uncharacterised protein family (UPF0093) 6 148 1.7E-48 T 10-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMQ28_11410 bc8df94d675aad075cb2079824ff0555 150 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 7 148 1.8E-41 T 10-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMQ28_01100 9238fbfad8354fadc14cbcab4bf47f4f 367 Pfam PF12146 Serine aminopeptidase, S33 104 313 5.5E-7 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_01100 9238fbfad8354fadc14cbcab4bf47f4f 367 PIRSF PIRSF005211 3 366 9.8E-54 T 10-10-2018 IPR012020 AB hydrolase 4 family AMQ28_01100 9238fbfad8354fadc14cbcab4bf47f4f 367 SUPERFAMILY SSF53474 62 354 3.08E-24 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01100 9238fbfad8354fadc14cbcab4bf47f4f 367 Gene3D G3DSA:3.40.50.1820 96 359 5.6E-19 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_02175 58b80fb3ff22793407d1427cee2581e0 148 Pfam PF09424 Yqey-like protein 5 147 3.6E-49 T 10-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 AMQ28_02175 58b80fb3ff22793407d1427cee2581e0 148 Gene3D G3DSA:1.10.10.410 92 148 5.4E-17 T 10-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMQ28_02175 58b80fb3ff22793407d1427cee2581e0 148 Gene3D G3DSA:1.10.1510.10 1 91 5.0E-26 T 10-10-2018 AMQ28_02175 58b80fb3ff22793407d1427cee2581e0 148 SUPERFAMILY SSF89095 3 147 1.78E-37 T 10-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 267 1.9E-12 T 10-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 Gene3D G3DSA:2.40.420.20 363 441 1.0E-7 T 10-10-2018 AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 Gene3D G3DSA:1.10.287.470 94 185 2.2E-18 T 10-10-2018 AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 330 1.1E-40 T 10-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 Gene3D G3DSA:2.40.30.170 218 312 5.2E-29 T 10-10-2018 AMQ28_05860 b674dd3d1f9b7754b921c50974cbc675 448 SUPERFAMILY SSF111369 53 264 2.35E-23 T 10-10-2018 AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 SMART SM00671 98 134 7.4E-5 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 SMART SM00671 209 244 1.1 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 SMART SM00671 62 97 3.6E-8 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 SUPERFAMILY SSF81901 26 248 5.32E-27 T 10-10-2018 AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 Pfam PF08238 Sel1 repeat 98 133 7.0E-6 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 Pfam PF08238 Sel1 repeat 211 237 41.0 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 Pfam PF08238 Sel1 repeat 62 97 1.0E-6 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_11330 e12f5f8345520fa88a75d4d51ae7f6f4 268 Gene3D G3DSA:1.25.40.10 33 268 2.4E-36 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_03875 c21bddeaa29319fdd3ee81860b615f58 204 SMART SM00947 38 203 2.3E-50 T 10-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMQ28_03875 c21bddeaa29319fdd3ee81860b615f58 204 SUPERFAMILY SSF53056 3 203 7.19E-51 T 10-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMQ28_03875 c21bddeaa29319fdd3ee81860b615f58 204 Pfam PF00484 Carbonic anhydrase 45 199 9.3E-38 T 10-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMQ28_03875 c21bddeaa29319fdd3ee81860b615f58 204 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 10-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMQ28_03875 c21bddeaa29319fdd3ee81860b615f58 204 Gene3D G3DSA:3.40.1050.10 1 203 2.7E-61 T 10-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMQ28_08670 9ae15b48bea5f2ede460b92fe42ae527 121 Pfam PF03692 Putative zinc- or iron-chelating domain 10 92 4.2E-8 T 10-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMQ28_05620 d34621b09cfe35f1346689fb4f24cf85 270 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 260 4.2E-76 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMQ28_05620 d34621b09cfe35f1346689fb4f24cf85 270 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 260 19.447 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMQ28_05620 d34621b09cfe35f1346689fb4f24cf85 270 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 137 149 - T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMQ28_05620 d34621b09cfe35f1346689fb4f24cf85 270 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 255 7.1E-75 T 10-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 92 751 3.5E-88 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 Gene3D G3DSA:2.170.130.10 74 196 2.6E-28 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 Gene3D G3DSA:2.40.170.20 197 753 1.2E-92 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 SUPERFAMILY SSF56935 82 753 1.37E-114 T 10-10-2018 AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 89 186 6.8E-20 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_08585 6e0ac5e39adc46258cdc2b89895eeb34 753 Pfam PF00593 TonB dependent receptor 260 751 6.9E-49 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Pfam PF01938 TRAM domain 18 68 1.7E-6 T 10-10-2018 IPR002792 TRAM domain AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 SUPERFAMILY SSF53335 85 456 1.88E-78 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 16 457 65.831 T 10-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Gene3D G3DSA:3.40.1350.30 144 286 1.9E-107 T 10-10-2018 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 388 418 - T 10-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 107 456 9.7E-30 T 10-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Gene3D G3DSA:2.40.50.140 2 96 1.2E-18 T 10-10-2018 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 42 449 8.8E-93 T 10-10-2018 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 Gene3D G3DSA:3.40.50.150 97 451 1.9E-107 T 10-10-2018 AMQ28_10840 c590bfd72c3e7d631d6e5c644351035a 467 SUPERFAMILY SSF50249 4 76 9.14E-11 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_13705 5a2cfee3a85503e4281efce155701f73 238 Gene3D G3DSA:3.30.1380.10 93 229 1.6E-5 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMQ28_13705 5a2cfee3a85503e4281efce155701f73 238 SUPERFAMILY SSF55166 108 229 4.0E-15 T 10-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMQ28_13705 5a2cfee3a85503e4281efce155701f73 238 Pfam PF08291 Peptidase M15 138 175 5.3E-6 T 10-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Gene3D G3DSA:3.40.50.300 198 364 8.8E-36 T 10-10-2018 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Gene3D G3DSA:3.40.50.11060 18 139 2.0E-38 T 10-10-2018 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 SUPERFAMILY SSF52540 199 372 5.05E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 2.5E-7 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 2.5E-7 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 286 2.5E-7 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 12 360 1.4E-144 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Pfam PF16360 GTP-binding GTPase Middle Region 115 193 1.1E-27 T 10-10-2018 IPR032305 GTP-binding protein, middle domain AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Pfam PF13167 GTP-binding GTPase N-terminal 28 113 1.8E-31 T 10-10-2018 IPR025121 GTPase HflX, N-terminal AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 PIRSF PIRSF006809 4 420 4.5E-138 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Hamap MF_00900 GTPase HflX [hflX]. 27 389 46.457 T 10-10-2018 IPR016496 GTPase HflX GO:0005525 AMQ28_11275 0442a61c853c0a387a679d9dd09b387c 443 Pfam PF01926 50S ribosome-binding GTPase 201 318 4.9E-19 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 656 3.6E-25 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 157 693 3.4E-154 T 10-10-2018 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Gene3D G3DSA:3.40.710.10 48 704 3.4E-241 T 10-10-2018 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 PIRSF PIRSF002799 1 783 6.3E-301 T 10-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 SUPERFAMILY SSF56601 305 747 3.43E-114 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Gene3D G3DSA:3.30.2060.10 56 144 3.4E-241 T 10-10-2018 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Pfam PF00912 Transglycosylase 153 323 9.9E-59 T 10-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 11 736 6.0E-238 T 10-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Gene3D G3DSA:1.10.3810.10 145 347 3.4E-241 T 10-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 Pfam PF14814 Bifunctional transglycosylase second domain 59 141 7.1E-20 T 10-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02515 2840f6f18ae61e8212d194c7ff1f5bac 798 SUPERFAMILY SSF53955 145 345 6.19E-67 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 Gene3D G3DSA:3.30.1330.60 338 483 3.8E-40 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01021 OMPA domain signature 420 436 1.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01021 OMPA domain signature 375 397 1.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01021 OMPA domain signature 405 420 1.5E-9 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 Pfam PF00691 OmpA family 374 469 1.5E-24 T 10-10-2018 IPR006665 OmpA-like domain AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 SUPERFAMILY SSF103088 363 474 2.88E-34 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 438 457 6.3E-8 T 10-10-2018 AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 458 478 6.3E-8 T 10-10-2018 AMQ28_02320 ae4e1e1765b9102417d5c37719e9aa06 494 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 420 437 6.3E-8 T 10-10-2018 AMQ28_06815 acf6bb3205001dee34d2e0c45072fdb8 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 7 354 4.2E-103 T 10-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AMQ28_06815 acf6bb3205001dee34d2e0c45072fdb8 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 11 354 1.0E-63 T 10-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 SUPERFAMILY SSF52540 1 336 6.59E-37 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 Gene3D G3DSA:1.20.1050.90 116 294 1.8E-71 T 10-10-2018 AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 337 1.3E-22 T 10-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 Gene3D G3DSA:3.40.50.300 6 329 1.8E-71 T 10-10-2018 AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 7.5E-79 T 10-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMQ28_08085 ac68c2e8beed8a77649ce20667b4b69b 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 74.454 T 10-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 SUPERFAMILY SSF52343 743 882 4.45E-35 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 SUPERFAMILY SSF63380 582 741 1.23E-18 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 Gene3D G3DSA:3.40.50.80 740 882 4.2E-39 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 SUPERFAMILY SSF52218 420 571 6.29E-38 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 686 693 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 787 798 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 774 783 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 841 849 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 750 769 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 818 834 9.5E-9 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 Pfam PF00258 Flavodoxin 430 559 7.5E-25 T 10-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 Pfam PF00175 Oxidoreductase NAD-binding domain 752 856 1.7E-10 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00369 Flavodoxin signature 477 488 6.3E-10 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00369 Flavodoxin signature 508 518 6.3E-10 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00369 Flavodoxin signature 533 552 6.3E-10 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 PRINTS PR00369 Flavodoxin signature 429 442 6.3E-10 T 10-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 Gene3D G3DSA:3.40.50.360 399 582 1.2E-38 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_04060 16efe2b58a06f06b2b3b0be8a8655096 882 Pfam PF03929 PepSY-associated TM region 7 402 5.9E-67 T 10-10-2018 IPR005625 PepSY-associated TM protein AMQ28_11035 f842c70cd47b69c22a716776e8064d99 123 Gene3D G3DSA:3.90.1150.30 2 122 4.1E-35 T 10-10-2018 IPR038056 YjbR-like superfamily AMQ28_11035 f842c70cd47b69c22a716776e8064d99 123 Pfam PF04237 YjbR 13 103 1.4E-21 T 10-10-2018 IPR007351 Uncharacterised protein YjbR AMQ28_11035 f842c70cd47b69c22a716776e8064d99 123 SUPERFAMILY SSF142906 9 117 1.31E-32 T 10-10-2018 IPR038056 YjbR-like superfamily AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 Gene3D G3DSA:1.10.10.10 2 84 1.2E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 SUPERFAMILY SSF46785 1 112 3.81E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 Gene3D G3DSA:3.40.190.290 93 299 2.9E-31 T 10-10-2018 AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 8.6E-14 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 SUPERFAMILY SSF53850 92 296 2.92E-31 T 10-10-2018 AMQ28_07885 0f7cd0224a6ceab5fc83cd9090420534 300 Pfam PF03466 LysR substrate binding domain 94 293 5.3E-29 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_00340 897c150346ae245c31d70e1d274c348e 116 Gene3D G3DSA:3.40.1260.10 1 115 1.3E-13 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_00340 897c150346ae245c31d70e1d274c348e 116 SUPERFAMILY SSF75169 2 116 4.47E-7 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 Gene3D G3DSA:2.70.210.12 1 158 1.0E-56 T 10-10-2018 IPR036726 GTP1/OBG domain superfamily AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 Pfam PF01926 50S ribosome-binding GTPase 161 284 8.3E-23 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 Pfam PF01018 GTP1/OBG 4 158 7.9E-56 T 10-10-2018 IPR006169 GTP1/OBG domain AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 3.9E-139 T 10-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 SUPERFAMILY SSF52540 151 338 1.52E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 Gene3D G3DSA:3.40.50.300 159 340 3.6E-49 T 10-10-2018 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 7.8E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.8E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 7.8E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.8E-34 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 SUPERFAMILY SSF82051 3 158 5.1E-54 T 10-10-2018 IPR036726 GTP1/OBG domain superfamily AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.645 T 10-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 PIRSF PIRSF002401 1 380 8.3E-135 T 10-10-2018 IPR035101 GTP-binding protein, Obg-type AMQ28_02825 b9ad5a0240e318caf9c10430363383ab 406 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 10-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMQ28_00880 3d5e1a72a3076d2844ab71c9bd695e67 163 SUPERFAMILY SSF50475 6 159 1.67E-48 T 10-10-2018 AMQ28_00880 3d5e1a72a3076d2844ab71c9bd695e67 163 Gene3D G3DSA:2.30.110.10 1 162 6.2E-47 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMQ28_00880 3d5e1a72a3076d2844ab71c9bd695e67 163 Pfam PF01613 Flavin reductase like domain 12 158 4.1E-34 T 10-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMQ28_00880 3d5e1a72a3076d2844ab71c9bd695e67 163 SMART SM00903 11 156 1.8E-52 T 10-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.6E-21 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 3.6E-21 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 3.6E-21 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.6E-21 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 3.6E-21 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 SUPERFAMILY SSF51735 12 233 6.92E-63 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_09535 de264f560864446f75732a8b74017120 295 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 0.0014 T 10-10-2018 AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 6.7E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.7E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 6.7E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 Gene3D G3DSA:3.40.50.720 2 265 3.5E-65 T 10-10-2018 AMQ28_09535 de264f560864446f75732a8b74017120 295 Pfam PF00106 short chain dehydrogenase 16 205 4.3E-54 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_09535 de264f560864446f75732a8b74017120 295 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 Pfam PF13180 PDZ domain 287 374 2.0E-16 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 Pfam PF13365 Trypsin-like peptidase domain 115 248 9.4E-32 T 10-10-2018 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 145 165 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 124 136 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 324 336 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 241 258 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 PRINTS PR00834 HtrA/DegQ protease family signature 184 208 2.4E-53 T 10-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 SUPERFAMILY SSF50156 258 368 2.1E-20 T 10-10-2018 IPR036034 PDZ superfamily GO:0005515 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 Gene3D G3DSA:2.30.42.10 282 387 1.0E-21 T 10-10-2018 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 SMART SM00228 287 366 1.7E-14 T 10-10-2018 IPR001478 PDZ domain GO:0005515 AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 SUPERFAMILY SSF50494 59 284 7.48E-62 T 10-10-2018 IPR009003 Peptidase S1, PA clan AMQ28_12830 02e360be759b5b0589eea7028caf51be 393 Gene3D G3DSA:2.40.10.120 57 280 7.8E-77 T 10-10-2018 AMQ28_09090 052fde0cae4ee087ae5bdd694152fc02 118 Pfam PF13276 HTH-like domain 36 88 6.3E-14 T 10-10-2018 IPR025948 HTH-like domain AMQ28_07365 4899355c89f64132125705c39204c876 196 Gene3D G3DSA:3.40.50.150 1 196 1.3E-51 T 10-10-2018 AMQ28_07365 4899355c89f64132125705c39204c876 196 SUPERFAMILY SSF53335 6 177 4.89E-29 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_07365 4899355c89f64132125705c39204c876 196 Pfam PF13649 Methyltransferase domain 41 129 1.3E-14 T 10-10-2018 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 Pfam PF03061 Thioesterase superfamily 19 101 1.8E-15 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 120 3.9E-28 T 10-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 Gene3D G3DSA:3.10.129.10 1 129 2.7E-40 T 10-10-2018 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 PIRSF PIRSF003230 1 135 3.9E-53 T 10-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 5 126 5.6E-47 T 10-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AMQ28_03120 2ccdac9f167295e02e19c4c389234b07 135 SUPERFAMILY SSF54637 2 128 1.53E-37 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 227 240 - T 10-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 SUPERFAMILY SSF51419 25 281 7.27E-81 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01181 Diaminopimelate decarboxylase signature 163 172 1.5E-30 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 1.5E-30 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01181 Diaminopimelate decarboxylase signature 74 91 1.5E-30 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 1.5E-30 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 Gene3D G3DSA:2.40.37.10 16 406 1.9E-147 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 411 40.802 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 410 5.9E-163 T 10-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 279 6.3E-74 T 10-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 Gene3D G3DSA:3.20.20.10 33 274 1.9E-147 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 SUPERFAMILY SSF50621 253 412 3.14E-50 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 368 1.8E-22 T 10-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 56 74 - T 10-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 56 74 1.6E-24 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 1.6E-24 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 189 202 1.6E-24 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 1.6E-24 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMQ28_03345 7e09e761d2a99ae30f9251a915fffde6 414 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 76 88 1.6E-24 T 10-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMQ28_06115 5f939740faac226b7552a1edb8db52bb 90 SMART SM00530 36 90 7.3E-7 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_06115 5f939740faac226b7552a1edb8db52bb 90 Pfam PF13560 Helix-turn-helix domain 38 85 1.6E-8 T 10-10-2018 AMQ28_06115 5f939740faac226b7552a1edb8db52bb 90 Gene3D G3DSA:1.10.260.40 4 90 4.8E-20 T 10-10-2018 AMQ28_06115 5f939740faac226b7552a1edb8db52bb 90 SUPERFAMILY SSF47413 37 80 4.86E-12 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_10170 a0bdc9d13f4100a94587e633280f5af5 396 Gene3D G3DSA:3.90.1150.10 259 395 7.9E-29 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_10170 a0bdc9d13f4100a94587e633280f5af5 396 SUPERFAMILY SSF53383 24 393 1.24E-72 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_10170 a0bdc9d13f4100a94587e633280f5af5 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 392 3.6E-74 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_10170 a0bdc9d13f4100a94587e633280f5af5 396 Gene3D G3DSA:3.40.640.10 1 256 1.1E-52 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_10170 a0bdc9d13f4100a94587e633280f5af5 396 PIRSF PIRSF001434 1 395 7.4E-100 T 10-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 SUPERFAMILY SSF51905 2 320 3.97E-27 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 Gene3D G3DSA:3.50.50.100 2 409 2.5E-110 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.8E-6 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.8E-6 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.8E-6 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 3.4E-13 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 3.4E-13 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 3.4E-13 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.4E-13 T 10-10-2018 AMQ28_12965 09eda58a4141251cef629e6d51de2c79 428 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 337 1.8E-55 T 10-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 PIRSF PIRSF006621 1 305 7.5E-74 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 85 103 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 Pfam PF01207 Dihydrouridine synthase (Dus) 1 278 3.1E-67 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 Gene3D G3DSA:3.20.20.70 1 233 1.0E-70 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 SUPERFAMILY SSF51395 1 299 5.68E-66 T 10-10-2018 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 Gene3D G3DSA:1.20.225.30 237 304 8.4E-9 T 10-10-2018 AMQ28_05010 8c3c2d1bb0ce2371267979d2a0273e9c 305 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 1 302 49.248 T 10-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 AMQ28_11645 45f0a672e46397c2b8ea64164cec75f1 398 Pfam PF05992 SbmA/BacA-like family 84 396 1.4E-156 T 10-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 SUPERFAMILY SSF52161 1 140 1.7E-58 T 10-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 Pfam PF00572 Ribosomal protein L13 15 138 9.3E-57 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 Gene3D G3DSA:3.90.1180.10 1 142 2.1E-62 T 10-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 1.7E-64 T 10-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 PIRSF PIRSF002181 1 142 1.4E-50 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMQ28_11235 182bb0d20ea3e289946be276de70a403 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.897 T 10-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMQ28_07465 51e0f0f2f2b5ebf7d0dec30db0ef814b 221 Gene3D G3DSA:1.10.4190.10 4 200 1.4E-44 T 10-10-2018 IPR038277 UreF domain superfamily AMQ28_07465 51e0f0f2f2b5ebf7d0dec30db0ef814b 221 Pfam PF01730 UreF 40 178 9.5E-29 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMQ28_07465 51e0f0f2f2b5ebf7d0dec30db0ef814b 221 PIRSF PIRSF009467 5 221 2.2E-56 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMQ28_07465 51e0f0f2f2b5ebf7d0dec30db0ef814b 221 Hamap MF_01385 Urease accessory protein UreF [ureF]. 8 221 26.865 T 10-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 SUPERFAMILY SSF52540 1 1180 1.36E-23 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 Gene3D G3DSA:3.40.50.300 1 288 2.6E-41 T 10-10-2018 AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 Gene3D G3DSA:3.40.50.300 930 1202 2.0E-25 T 10-10-2018 AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 SUPERFAMILY SSF52540 19 507 3.8E-8 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1103 1160 1.5E-10 T 10-10-2018 AMQ28_11580 f9061a1780c59f35f57ab9b3ee9f6521 1202 Pfam PF13476 AAA domain 5 241 2.0E-24 T 10-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 335 2.7E-117 T 10-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 37.564 T 10-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 Pfam PF02885 Glycosyl transferase family, helical bundle domain 10 66 1.5E-18 T 10-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 SUPERFAMILY SSF47648 1 70 4.45E-20 T 10-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 Pfam PF00591 Glycosyl transferase family, a/b domain 76 330 6.3E-99 T 10-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 Gene3D G3DSA:3.40.1030.10 71 348 5.5E-101 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 Gene3D G3DSA:1.20.970.10 1 70 3.9E-31 T 10-10-2018 AMQ28_12750 4abbb1e84022aed9cbff83d7849bb280 348 SUPERFAMILY SSF52418 75 343 3.01E-86 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 488 1.9E-161 T 10-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 Pfam PF00425 chorismate binding enzyme 221 480 1.8E-92 T 10-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 Gene3D G3DSA:3.60.120.10 1 494 2.7E-177 T 10-10-2018 IPR005801 ADC synthase GO:0009058 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 173 3.4E-37 T 10-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 PRINTS PR00095 Anthranilate synthase component I signature 422 436 1.3E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 PRINTS PR00095 Anthranilate synthase component I signature 328 341 1.3E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 PRINTS PR00095 Anthranilate synthase component I signature 437 451 1.3E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 PRINTS PR00095 Anthranilate synthase component I signature 342 355 1.3E-23 T 10-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMQ28_09365 4f3eabae946993b346e9dd1dbc8bac80 497 SUPERFAMILY SSF56322 15 490 7.72E-153 T 10-10-2018 IPR005801 ADC synthase GO:0009058 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:1.10.8.280 288 404 5.6E-247 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:1.20.1580.10 694 832 3.9E-140 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:3.40.50.300 8 596 5.6E-247 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 SUPERFAMILY SSF52540 623 912 8.24E-54 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:3.30.190.20 132 245 5.6E-247 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:1.20.1580.10 92 493 5.6E-247 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 942 22.287 T 10-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Gene3D G3DSA:3.40.50.300 618 938 3.9E-140 T 10-10-2018 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 927 0.0 T 10-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 Pfam PF00005 ABC transporter 625 862 4.2E-12 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 SUPERFAMILY SSF52540 6 570 2.79E-48 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08805 fca55da63cab5c232eb19467bde75e36 943 ProSitePatterns PS00211 ABC transporters family signature. 832 846 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_12785 839d8ead621e67f23b4147bc5d3ec3eb 396 Gene3D G3DSA:3.40.50.1820 305 395 2.0E-5 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12785 839d8ead621e67f23b4147bc5d3ec3eb 396 Pfam PF03583 Secretory lipase 110 354 3.7E-7 T 10-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 AMQ28_12785 839d8ead621e67f23b4147bc5d3ec3eb 396 PIRSF PIRSF029171 38 396 6.8E-72 T 10-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 AMQ28_12785 839d8ead621e67f23b4147bc5d3ec3eb 396 Gene3D G3DSA:3.40.50.1820 32 280 9.1E-46 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12785 839d8ead621e67f23b4147bc5d3ec3eb 396 SUPERFAMILY SSF53474 56 379 7.91E-30 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_08005 492ab9db38f507a7b3c56d8755cc965e 292 Gene3D G3DSA:3.60.15.10 25 277 2.3E-27 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_08005 492ab9db38f507a7b3c56d8755cc965e 292 Pfam PF13483 Beta-lactamase superfamily domain 27 241 2.4E-10 T 10-10-2018 AMQ28_08005 492ab9db38f507a7b3c56d8755cc965e 292 SMART SM00849 32 241 8.0E-4 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_08005 492ab9db38f507a7b3c56d8755cc965e 292 SUPERFAMILY SSF56281 29 245 8.12E-16 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_05560 8883a2852edf93b46e75eee14ac36eeb 369 Gene3D G3DSA:3.20.20.70 15 367 5.3E-115 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_05560 8883a2852edf93b46e75eee14ac36eeb 369 SUPERFAMILY SSF51395 18 362 1.65E-82 T 10-10-2018 AMQ28_05560 8883a2852edf93b46e75eee14ac36eeb 369 PIRSF PIRSF000138 10 368 5.3E-111 T 10-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMQ28_05560 8883a2852edf93b46e75eee14ac36eeb 369 Pfam PF01070 FMN-dependent dehydrogenase 26 363 6.1E-111 T 10-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 309 5.7E-104 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 PIRSF PIRSF005303 1 309 8.9E-95 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 Gene3D G3DSA:3.30.1330.10 1 146 4.3E-46 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 309 28.901 T 10-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 Pfam PF00586 AIR synthase related protein, N-terminal domain 30 140 6.0E-27 T 10-10-2018 IPR016188 PurM-like, N-terminal domain AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 SUPERFAMILY SSF56042 145 297 1.64E-34 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 Pfam PF02769 AIR synthase related protein, C-terminal domain 189 289 3.2E-7 T 10-10-2018 IPR010918 PurM-like, C-terminal domain AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 Gene3D G3DSA:3.90.650.10 147 310 4.5E-49 T 10-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMQ28_07655 985500c086ef0a37571d1839e1244f24 310 SUPERFAMILY SSF55326 3 141 4.71E-38 T 10-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 PIRSF PIRSF016262 6 219 1.2E-58 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 SUPERFAMILY SSF55681 13 205 4.47E-58 T 10-10-2018 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 80 133 5.0E-21 T 10-10-2018 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 32 190 1.4E-55 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 164 6.1E-9 T 10-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 Gene3D G3DSA:3.30.930.10 7 207 2.3E-53 T 10-10-2018 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 76 91 - T 10-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMQ28_12025 725b179ee32b79581f0de07c5c68dc70 219 Hamap MF_00013 Octanoyltransferase [lipB]. 9 212 32.94 T 10-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 Gene3D G3DSA:3.40.50.300 334 547 2.3E-39 T 10-10-2018 AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 Gene3D G3DSA:3.40.50.300 1 245 5.9E-42 T 10-10-2018 AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 SUPERFAMILY SSF52540 1 505 5.78E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 PIRSF PIRSF003128 1 551 3.1E-136 T 10-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 505 4.9E-19 T 10-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMQ28_06655 b29138d3cb6ce6b7856f888e1cb83fe7 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 545 2.6E-136 T 10-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMQ28_07185 2d3a226b936cf34d5843176caf1837cd 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 424 1.1E-73 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_07185 2d3a226b936cf34d5843176caf1837cd 455 PIRSF PIRSF006603 1 455 2.5E-101 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_07185 2d3a226b936cf34d5843176caf1837cd 455 Pfam PF01554 MatE 23 183 5.3E-33 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_07185 2d3a226b936cf34d5843176caf1837cd 455 Pfam PF01554 MatE 252 413 4.8E-29 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_11230 e2bea9358a6116980abd3f56cd6d6e66 128 Gene3D G3DSA:3.30.230.10 2 128 7.6E-50 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_11230 e2bea9358a6116980abd3f56cd6d6e66 128 Pfam PF00380 Ribosomal protein S9/S16 8 128 1.4E-43 T 10-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMQ28_11230 e2bea9358a6116980abd3f56cd6d6e66 128 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 128 30.745 T 10-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AMQ28_11230 e2bea9358a6116980abd3f56cd6d6e66 128 ProSitePatterns PS00360 Ribosomal protein S9 signature. 67 85 - T 10-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMQ28_11230 e2bea9358a6116980abd3f56cd6d6e66 128 SUPERFAMILY SSF54211 4 128 2.84E-46 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 Gene3D G3DSA:1.10.8.450 255 289 1.3E-104 T 10-10-2018 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 SUPERFAMILY SSF53850 44 275 7.76E-49 T 10-10-2018 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 Gene3D G3DSA:3.40.190.10 46 322 1.3E-104 T 10-10-2018 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 Gene3D G3DSA:3.40.190.10 124 223 1.3E-104 T 10-10-2018 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 Pfam PF13379 NMT1-like family 41 268 2.9E-16 T 10-10-2018 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 46 328 5.7E-74 T 10-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AMQ28_08300 29b9dae028d11c5220c93a42fa4a875c 330 SMART SM00062 45 260 8.2E-19 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMQ28_06405 776a9290ed14aed8684d7d402e02bedc 519 Pfam PF00795 Carbon-nitrogen hydrolase 228 476 5.0E-30 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMQ28_06405 776a9290ed14aed8684d7d402e02bedc 519 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 20 496 22.237 T 10-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMQ28_06405 776a9290ed14aed8684d7d402e02bedc 519 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 73 458 2.5E-95 T 10-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMQ28_06405 776a9290ed14aed8684d7d402e02bedc 519 SUPERFAMILY SSF56317 225 490 1.31E-44 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_06405 776a9290ed14aed8684d7d402e02bedc 519 Gene3D G3DSA:3.60.110.10 223 481 3.1E-14 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-74 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 Gene3D G3DSA:3.50.7.10 173 379 9.9E-239 T 10-10-2018 IPR027409 GroEL-like apical domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 10-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 Gene3D G3DSA:3.30.260.10 138 410 9.9E-239 T 10-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 SUPERFAMILY SSF48592 7 521 1.33E-78 T 10-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 3.0E-95 T 10-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 6.5E-253 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 Gene3D G3DSA:1.10.560.10 8 521 9.9E-239 T 10-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 SUPERFAMILY SSF54849 137 205 3.66E-22 T 10-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 SUPERFAMILY SSF52029 184 376 3.44E-83 T 10-10-2018 IPR027409 GroEL-like apical domain superfamily AMQ28_12355 419e107cf93e5372a91159bda9030fc9 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.12 T 10-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMQ28_09315 43062802e9e4a8761848fcf1cdadecdb 259 SUPERFAMILY SSF69618 4 231 1.01E-32 T 10-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09315 43062802e9e4a8761848fcf1cdadecdb 259 Gene3D G3DSA:3.40.50.10090 32 166 4.8E-37 T 10-10-2018 AMQ28_09315 43062802e9e4a8761848fcf1cdadecdb 259 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 227 6.5E-24 T 10-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMQ28_09315 43062802e9e4a8761848fcf1cdadecdb 259 Gene3D G3DSA:3.40.50.10090 7 225 4.8E-37 T 10-10-2018 AMQ28_14075 4256e02b425107f7e042ff4f65035bc3 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.7E-67 T 10-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMQ28_14075 4256e02b425107f7e042ff4f65035bc3 128 Pfam PF01592 NifU-like N terminal domain 2 127 3.6E-56 T 10-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMQ28_14075 4256e02b425107f7e042ff4f65035bc3 128 Gene3D G3DSA:3.90.1010.10 1 128 1.4E-57 T 10-10-2018 AMQ28_14075 4256e02b425107f7e042ff4f65035bc3 128 SUPERFAMILY SSF82649 1 125 1.94E-48 T 10-10-2018 AMQ28_12465 ca37bdc0692a34f1ed110bcf49c48a77 195 SUPERFAMILY SSF100950 7 194 1.53E-44 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_12465 ca37bdc0692a34f1ed110bcf49c48a77 195 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 187 5.5E-35 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMQ28_12465 ca37bdc0692a34f1ed110bcf49c48a77 195 PIRSF PIRSF006806 1 190 3.3E-38 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMQ28_12465 ca37bdc0692a34f1ed110bcf49c48a77 195 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 187 5.4E-41 T 10-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMQ28_12465 ca37bdc0692a34f1ed110bcf49c48a77 195 Gene3D G3DSA:3.40.50.10420 5 195 4.4E-49 T 10-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMQ28_03000 02f117f08b54932e1357a21eb9aa18e8 277 Gene3D G3DSA:1.10.3720.10 13 272 5.2E-68 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_03000 02f117f08b54932e1357a21eb9aa18e8 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 7 270 1.0E-127 T 10-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AMQ28_03000 02f117f08b54932e1357a21eb9aa18e8 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 265 6.9E-95 T 10-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMQ28_03000 02f117f08b54932e1357a21eb9aa18e8 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 272 7.7E-28 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_03000 02f117f08b54932e1357a21eb9aa18e8 277 SUPERFAMILY SSF161098 14 264 2.43E-55 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_13960 fdc2825c334e79c070db835fd7255e99 287 Pfam PF00892 EamA-like transporter family 3 132 6.1E-12 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_13960 fdc2825c334e79c070db835fd7255e99 287 SUPERFAMILY SSF103481 38 137 1.03E-9 T 10-10-2018 AMQ28_09155 bff43a8aac748b024f97b9c92710e2ab 252 Pfam PF00977 Histidine biosynthesis protein 5 233 6.7E-86 T 10-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMQ28_09155 bff43a8aac748b024f97b9c92710e2ab 252 Gene3D G3DSA:3.20.20.70 1 252 1.4E-108 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_09155 bff43a8aac748b024f97b9c92710e2ab 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 47.83 T 10-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMQ28_09155 bff43a8aac748b024f97b9c92710e2ab 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 6.3E-111 T 10-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMQ28_09155 bff43a8aac748b024f97b9c92710e2ab 252 SUPERFAMILY SSF51366 1 251 1.18E-84 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 Gene3D G3DSA:3.40.30.10 159 258 4.3E-16 T 10-10-2018 AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 Pfam PF13417 Glutathione S-transferase, N-terminal domain 38 113 1.1E-15 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 Pfam PF13417 Glutathione S-transferase, N-terminal domain 162 257 1.1E-10 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 SUPERFAMILY SSF52833 161 257 4.49E-9 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 SUPERFAMILY SSF52833 36 130 3.94E-18 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13925 394949a306e4dbf525d1f05cdd5f85a8 258 Gene3D G3DSA:3.40.30.10 32 131 3.5E-16 T 10-10-2018 AMQ28_03625 9e2f3236fb2f0f771a1e94a931182d96 306 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 17 279 54.755 T 10-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 AMQ28_03625 9e2f3236fb2f0f771a1e94a931182d96 306 Gene3D G3DSA:3.40.50.620 21 278 8.2E-46 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03625 9e2f3236fb2f0f771a1e94a931182d96 306 Pfam PF01171 PP-loop family 49 213 2.9E-15 T 10-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMQ28_03625 9e2f3236fb2f0f771a1e94a931182d96 306 PIRSF PIRSF004976 6 285 2.4E-69 T 10-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 AMQ28_03625 9e2f3236fb2f0f771a1e94a931182d96 306 SUPERFAMILY SSF52402 26 244 1.77E-53 T 10-10-2018 AMQ28_03815 8192b098342ddd87bab048c8bba7939d 168 SUPERFAMILY SSF53474 7 103 6.23E-9 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03815 8192b098342ddd87bab048c8bba7939d 168 Pfam PF05728 Uncharacterised protein family (UPF0227) 7 110 1.8E-9 T 10-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AMQ28_03815 8192b098342ddd87bab048c8bba7939d 168 Gene3D G3DSA:3.40.50.1820 5 166 4.8E-16 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 SUPERFAMILY SSF47616 85 201 6.13E-36 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 Gene3D G3DSA:3.40.30.10 2 203 1.5E-83 T 10-10-2018 AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 SUPERFAMILY SSF52833 1 83 3.34E-22 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 Gene3D G3DSA:1.20.1050.10 87 194 1.5E-83 T 10-10-2018 AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 80 1.7E-14 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_05660 76959e9bf23f7924fa585e21b32f139b 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 128 195 5.5E-9 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMQ28_07155 8350a28800bed50bba5c5839f5245fb7 164 SUPERFAMILY SSF46785 27 159 1.99E-25 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_07155 8350a28800bed50bba5c5839f5245fb7 164 Gene3D G3DSA:3.30.1490.190 106 164 7.0E-13 T 10-10-2018 AMQ28_07155 8350a28800bed50bba5c5839f5245fb7 164 Pfam PF01475 Ferric uptake regulator family 35 152 3.6E-9 T 10-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMQ28_07155 8350a28800bed50bba5c5839f5245fb7 164 Gene3D G3DSA:1.10.10.10 16 105 1.8E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_14095 e481239bff91fd8e35faae90d6e48995 155 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 30 141 3.2E-33 T 10-10-2018 IPR008769 Poly granule associated AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 Gene3D G3DSA:3.40.50.720 3 261 1.2E-66 T 10-10-2018 AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 6.0E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 6.0E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 6.0E-12 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 SUPERFAMILY SSF51735 4 241 3.52E-61 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 Pfam PF00106 short chain dehydrogenase 4 185 6.9E-50 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 6.8E-28 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 6.8E-28 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 6.8E-28 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 6.8E-28 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03595 51c52df43d6fd1eed28a751f42da3f3c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 6.8E-28 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13970 0d32b6bacf687846ad1c47de43af32d6 239 Pfam PF00149 Calcineurin-like phosphoesterase 3 197 6.1E-7 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMQ28_13970 0d32b6bacf687846ad1c47de43af32d6 239 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 235 90.178 T 10-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AMQ28_13970 0d32b6bacf687846ad1c47de43af32d6 239 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 226 5.8E-74 T 10-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AMQ28_13970 0d32b6bacf687846ad1c47de43af32d6 239 SUPERFAMILY SSF56300 2 229 1.65E-26 T 10-10-2018 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 218 36.01 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 120 6.1E-23 T 10-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 Gene3D G3DSA:2.30.110.10 4 218 3.6E-75 T 10-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 10-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 5 218 4.5E-77 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 SUPERFAMILY SSF50475 16 218 6.68E-59 T 10-10-2018 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 1.1E-19 T 10-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_08685 c996c89ef572a7bf3eaa2b29172ed060 218 PIRSF PIRSF000190 1 218 1.1E-73 T 10-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 SMART SM00739 3 30 2.1E-5 T 10-10-2018 IPR005824 KOW AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 8.6E-35 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 SUPERFAMILY SSF50104 3 100 1.62E-28 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 19.053 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 Gene3D G3DSA:2.30.30.30 1 103 1.6E-33 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 37 101 1.5E-20 T 10-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 Pfam PF00467 KOW motif 6 34 9.4E-6 T 10-10-2018 IPR005824 KOW AMQ28_10240 560e2a79e430040f15e0c570b27b3a60 106 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 10-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_09160 ba97ce036fdaac20b8829f2dd80ef35e 316 Gene3D G3DSA:3.90.1200.10 104 314 2.8E-53 T 10-10-2018 AMQ28_09160 ba97ce036fdaac20b8829f2dd80ef35e 316 Gene3D G3DSA:3.30.200.20 1 101 4.0E-20 T 10-10-2018 AMQ28_09160 ba97ce036fdaac20b8829f2dd80ef35e 316 Pfam PF01636 Phosphotransferase enzyme family 28 245 1.2E-22 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase AMQ28_09160 ba97ce036fdaac20b8829f2dd80ef35e 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 91.005 T 10-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMQ28_09160 ba97ce036fdaac20b8829f2dd80ef35e 316 SUPERFAMILY SSF56112 5 313 2.04E-57 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_13640 730ffd05f086d38c6e2cd5943629fa36 182 Gene3D G3DSA:2.60.450.10 59 182 2.1E-7 T 10-10-2018 AMQ28_13640 730ffd05f086d38c6e2cd5943629fa36 182 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 8 179 4.9E-31 T 10-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AMQ28_13640 730ffd05f086d38c6e2cd5943629fa36 182 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 178 1.7E-33 T 10-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 24 92 6.6E-19 T 10-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 329 33.297 T 10-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 10 328 2.8E-104 T 10-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Gene3D G3DSA:2.160.10.10 103 312 3.7E-68 T 10-10-2018 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 5.8E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 146 1.0E-5 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 2.3E-6 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 Gene3D G3DSA:3.40.1390.10 1 102 5.4E-31 T 10-10-2018 AMQ28_13860 6be75c205a204703f09b7740fecf424a 355 SUPERFAMILY SSF51161 34 313 1.42E-70 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_04685 de9aec78f71862cbc1dc67590b2f7af7 173 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 2.2E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_04685 de9aec78f71862cbc1dc67590b2f7af7 173 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 29 3.7E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_04685 de9aec78f71862cbc1dc67590b2f7af7 173 Gene3D G3DSA:3.30.700.10 9 155 3.0E-12 T 10-10-2018 AMQ28_04685 de9aec78f71862cbc1dc67590b2f7af7 173 Pfam PF12019 Type II transport protein GspH 46 163 1.7E-11 T 10-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 AMQ28_04685 de9aec78f71862cbc1dc67590b2f7af7 173 SUPERFAMILY SSF54523 9 151 1.02E-18 T 10-10-2018 AMQ28_08930 8cbbded99b067f1eeaf903a9d53a30da 99 SUPERFAMILY SSF46689 4 97 1.56E-19 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_08930 8cbbded99b067f1eeaf903a9d53a30da 99 Gene3D G3DSA:1.10.10.60 9 97 3.8E-11 T 10-10-2018 AMQ28_08930 8cbbded99b067f1eeaf903a9d53a30da 99 Pfam PF01527 Transposase 3 77 3.0E-16 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_10110 7e71d396d6ed8d0c24b91e8a4c0cbdbe 135 ProSitePatterns PS00893 Nudix box signature. 34 55 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_10110 7e71d396d6ed8d0c24b91e8a4c0cbdbe 135 Pfam PF00293 NUDIX domain 6 123 3.6E-18 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_10110 7e71d396d6ed8d0c24b91e8a4c0cbdbe 135 SUPERFAMILY SSF55811 2 110 1.35E-23 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_10110 7e71d396d6ed8d0c24b91e8a4c0cbdbe 135 Gene3D G3DSA:3.90.79.10 1 131 4.8E-24 T 10-10-2018 AMQ28_03470 dc7ceb91eee5f5a1288e6110029857d6 213 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_03470 dc7ceb91eee5f5a1288e6110029857d6 213 SUPERFAMILY SSF52540 8 211 9.96E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03470 dc7ceb91eee5f5a1288e6110029857d6 213 SMART SM00382 22 208 1.2E-7 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03470 dc7ceb91eee5f5a1288e6110029857d6 213 Pfam PF00005 ABC transporter 22 159 7.4E-30 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_03470 dc7ceb91eee5f5a1288e6110029857d6 213 Gene3D G3DSA:3.40.50.300 5 213 4.2E-48 T 10-10-2018 AMQ28_02510 862c896c9f22412634bff3cb4efe90d4 304 Pfam PF01513 ATP-NAD kinase 23 276 6.3E-64 T 10-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMQ28_02510 862c896c9f22412634bff3cb4efe90d4 304 Gene3D G3DSA:2.60.200.30 134 270 1.6E-89 T 10-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMQ28_02510 862c896c9f22412634bff3cb4efe90d4 304 Hamap MF_00361 NAD kinase [nadK]. 12 293 32.306 T 10-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMQ28_02510 862c896c9f22412634bff3cb4efe90d4 304 Gene3D G3DSA:3.40.50.10330 32 293 1.6E-89 T 10-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMQ28_02510 862c896c9f22412634bff3cb4efe90d4 304 SUPERFAMILY SSF111331 13 296 4.45E-86 T 10-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMQ28_06545 2e2d7eaabef18504fc4d7d765c023581 121 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 107 1.2E-25 T 10-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 ProSitePatterns PS00755 Protein secY signature 1. 81 100 - T 10-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 28 46 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 376 394 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 80 100 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 321 343 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 121 144 5.9E-93 T 10-10-2018 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 15 439 28.512 T 10-10-2018 IPR026593 Protein translocase subunit SecY AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 SUPERFAMILY SSF103491 9 430 5.1E-127 T 10-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 26 435 8.2E-126 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 Pfam PF00344 SecY translocase 81 423 3.9E-112 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 PIRSF PIRSF004557 9 445 2.6E-121 T 10-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_10285 9787553740177842b1acc558bcb2ee2a 450 Gene3D G3DSA:1.10.3370.10 12 435 1.3E-157 T 10-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMQ28_06725 c7a84be6a3610282a9a0cbfdf5ac8216 269 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 13 255 33.213 T 10-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AMQ28_06725 c7a84be6a3610282a9a0cbfdf5ac8216 269 Gene3D G3DSA:3.60.21.10 1 268 3.9E-62 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like AMQ28_06725 c7a84be6a3610282a9a0cbfdf5ac8216 269 Pfam PF00149 Calcineurin-like phosphoesterase 14 201 2.8E-14 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMQ28_06725 c7a84be6a3610282a9a0cbfdf5ac8216 269 SUPERFAMILY SSF56300 14 264 3.65E-53 T 10-10-2018 AMQ28_06725 c7a84be6a3610282a9a0cbfdf5ac8216 269 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 208 255 1.0E-10 T 10-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 AMQ28_08125 875ad7fee769eb830342842f953831ec 382 Pfam PF07690 Major Facilitator Superfamily 3 281 2.7E-16 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_08125 875ad7fee769eb830342842f953831ec 382 Gene3D G3DSA:1.20.1250.20 1 182 7.7E-20 T 10-10-2018 AMQ28_08125 875ad7fee769eb830342842f953831ec 382 Gene3D G3DSA:1.20.1250.20 196 378 5.9E-9 T 10-10-2018 AMQ28_08125 875ad7fee769eb830342842f953831ec 382 SUPERFAMILY SSF103473 2 376 5.1E-34 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 1.5E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 1.5E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 1.5E-12 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 Pfam PF01022 Bacterial regulatory protein, arsR family 27 71 4.7E-13 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 SMART SM00418 20 98 1.8E-24 T 10-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 Gene3D G3DSA:1.10.10.10 2 101 2.1E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07520 273b2bbf806dcb67012d94ece7e3bf2e 102 SUPERFAMILY SSF46785 12 101 1.08E-25 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_05000 19144b99e6eacfc4d544b2a5c62db154 287 SUPERFAMILY SSF53098 101 274 2.5E-6 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05000 19144b99e6eacfc4d544b2a5c62db154 287 Pfam PF13612 Transposase DDE domain 103 258 1.5E-63 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_06390 19144b99e6eacfc4d544b2a5c62db154 287 SUPERFAMILY SSF53098 101 274 2.5E-6 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_06390 19144b99e6eacfc4d544b2a5c62db154 287 Pfam PF13612 Transposase DDE domain 103 258 1.5E-63 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 Gene3D G3DSA:3.40.640.10 60 308 1.7E-125 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 Pfam PF00202 Aminotransferase class-III 26 398 1.2E-101 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 PIRSF PIRSF000521 173 401 6.3E-36 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 PIRSF PIRSF000521 22 162 2.2E-10 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 398 1.5E-129 T 10-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 263 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 SUPERFAMILY SSF53383 14 399 4.78E-112 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 Gene3D G3DSA:3.90.1150.10 26 388 1.7E-125 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_02700 df0921f569b12e9aedd83f438bb07ee4 403 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 401 67.924 T 10-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMQ28_09285 a1133131d4ba601f88c438fa02574ed3 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 85 5.0E-17 T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMQ28_09285 a1133131d4ba601f88c438fa02574ed3 195 PIRSF PIRSF000847 4 195 3.8E-46 T 10-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMQ28_09285 a1133131d4ba601f88c438fa02574ed3 195 Gene3D G3DSA:1.20.120.1760 5 188 2.5E-13 T 10-10-2018 AMQ28_09285 a1133131d4ba601f88c438fa02574ed3 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 193 1.9E-51 T 10-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMQ28_09285 a1133131d4ba601f88c438fa02574ed3 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMQ28_11620 6d00b1cb72c20890d0fd32fcf8a5b21d 225 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 12 213 8.8E-73 T 10-10-2018 IPR008517 Protein of unknown function DUF799 AMQ28_11620 6d00b1cb72c20890d0fd32fcf8a5b21d 225 Gene3D G3DSA:3.40.50.10610 27 190 2.5E-59 T 10-10-2018 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 SUPERFAMILY SSF52402 2 245 2.21E-55 T 10-10-2018 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 Pfam PF03054 tRNA methyl transferase 3 366 6.2E-133 T 10-10-2018 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 366 4.3E-132 T 10-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 Gene3D G3DSA:2.40.30.10 284 375 3.4E-27 T 10-10-2018 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 Gene3D G3DSA:3.40.50.620 1 214 1.5E-89 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 367 38.484 T 10-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMQ28_02745 487c3c73c9980e9f7c4d477942cdea08 377 Gene3D G3DSA:2.30.30.280 215 282 1.6E-23 T 10-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 Gene3D G3DSA:3.30.450.20 178 286 3.0E-6 T 10-10-2018 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 SUPERFAMILY SSF55874 397 514 1.96E-25 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 415 514 6.1E-13 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 Gene3D G3DSA:1.10.287.130 299 375 1.7E-15 T 10-10-2018 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 Gene3D G3DSA:3.30.565.10 379 518 8.5E-27 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 9.6E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 9.6E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 9.6E-7 T 10-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 SMART SM00387 414 520 2.7E-19 T 10-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 Pfam PF00512 His Kinase A (phospho-acceptor) domain 312 373 2.9E-13 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 SUPERFAMILY SSF55785 191 250 1.31E-5 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 SUPERFAMILY SSF47384 306 372 2.94E-12 T 10-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMQ28_06795 5ab6908c490fcd737ad4b203a0410c86 525 SMART SM00388 312 376 2.1E-12 T 10-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 Gene3D G3DSA:2.20.28.10 1 54 3.4E-28 T 10-10-2018 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 10-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 SUPERFAMILY SSF57802 1 53 1.57E-22 T 10-10-2018 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 PRINTS PR00163 Rubredoxin signature 3 19 1.6E-10 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 PRINTS PR00163 Rubredoxin signature 33 49 1.6E-10 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 PIRSF PIRSF000071 1 54 2.7E-25 T 10-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 AMQ28_03825 3da393c05dc490d3a29c761bb4bf8426 54 Pfam PF00301 Rubredoxin 3 49 5.9E-24 T 10-10-2018 IPR024935 Rubredoxin domain GO:0005506 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PIRSF PIRSF002560 1 154 1.7E-60 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 Gene3D G3DSA:1.20.1260.10 1 154 2.4E-57 T 10-10-2018 IPR012347 Ferritin-like AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 Pfam PF00210 Ferritin-like domain 8 143 8.2E-32 T 10-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 65 85 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 23 43 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 128 149 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 3 22 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 107 127 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 86 106 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 PRINTS PR00601 Bacterioferritin signature 44 64 5.9E-55 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 2.7E-61 T 10-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMQ28_09810 7d3af19fc4957f59fd7cc31c659cb30b 154 SUPERFAMILY SSF47240 1 154 4.97E-43 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 Gene3D G3DSA:3.20.20.120 118 353 5.3E-114 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 125 2.0E-28 T 10-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 Pfam PF13378 Enolase C-terminal domain-like 148 359 3.9E-43 T 10-10-2018 IPR029065 Enolase C-terminal domain-like AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 191 222 - T 10-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 2 369 4.3E-174 T 10-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 Gene3D G3DSA:3.30.390.10 9 359 5.3E-114 T 10-10-2018 IPR029017 Enolase-like, N-terminal AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 SUPERFAMILY SSF54826 3 126 1.0E-30 T 10-10-2018 AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 SUPERFAMILY SSF51604 113 367 1.23E-63 T 10-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMQ28_00630 5a00c8c121585317daa3462332e7d9a8 369 SMART SM00922 144 241 7.9E-22 T 10-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMQ28_07895 277c2cb6209b53de54a46b2b4b8fb9d2 95 SMART SM00830 13 92 3.7E-18 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_07895 277c2cb6209b53de54a46b2b4b8fb9d2 95 SUPERFAMILY SSF48600 2 91 1.01E-21 T 10-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_07895 277c2cb6209b53de54a46b2b4b8fb9d2 95 Gene3D G3DSA:1.20.59.10 1 95 8.7E-31 T 10-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_07895 277c2cb6209b53de54a46b2b4b8fb9d2 95 Pfam PF01817 Chorismate mutase type II 13 89 6.2E-15 T 10-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Gene3D G3DSA:1.20.140.10 288 457 1.6E-41 T 10-10-2018 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 1.7E-18 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Gene3D G3DSA:1.10.540.10 20 160 6.7E-17 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 SUPERFAMILY SSF56645 40 278 9.29E-58 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 SUPERFAMILY SSF47203 288 476 7.89E-47 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 33 3.4E-15 T 10-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 1.1E-17 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Gene3D G3DSA:2.40.110.10 162 287 6.5E-28 T 10-10-2018 AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 594 7.3E-37 T 10-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMQ28_11015 8ea683acf54a2d9499b4b85372dc44a8 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 158 1.4E-14 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 208 3.0E-48 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 206 26.442 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 Gene3D G3DSA:3.40.50.150 4 209 1.9E-61 T 10-10-2018 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 PIRSF PIRSF003078 1 210 3.8E-51 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 Pfam PF02527 rRNA small subunit methyltransferase G 25 204 6.6E-50 T 10-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMQ28_01755 8e4dc1d70c6497ce829618c6a3024919 210 SUPERFAMILY SSF53335 7 208 1.01E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 159 1.7E-33 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 SMART SM00226 7 162 1.1E-35 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 134 149 6.9E-15 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 9 26 6.9E-15 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 115 128 6.9E-15 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 Gene3D G3DSA:3.40.50.2300 1 169 1.5E-47 T 10-10-2018 AMQ28_01475 7d7cd3829eb24cf70ff9df8b3601d9ab 170 SUPERFAMILY SSF52788 5 162 7.06E-43 T 10-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 SUPERFAMILY SSF53850 92 304 1.01E-31 T 10-10-2018 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.3E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 Gene3D G3DSA:3.40.190.10 189 278 1.3E-18 T 10-10-2018 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.3E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.3E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.3E-8 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 Gene3D G3DSA:1.10.10.10 7 88 2.6E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 Gene3D G3DSA:3.40.190.10 89 188 4.8E-23 T 10-10-2018 AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 Pfam PF03466 LysR substrate binding domain 91 304 3.1E-30 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03450 dc5c2613046d7973f9067a0a7ea7ba8b 319 SUPERFAMILY SSF46785 3 82 6.05E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_11905 4c01e7348eb05db3cfddfb5fd9d9461a 382 SUPERFAMILY SSF52540 1 363 2.56E-26 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11905 4c01e7348eb05db3cfddfb5fd9d9461a 382 Gene3D G3DSA:3.40.50.300 1 376 6.5E-32 T 10-10-2018 AMQ28_11905 4c01e7348eb05db3cfddfb5fd9d9461a 382 Pfam PF13175 AAA ATPase domain 17 354 5.8E-20 T 10-10-2018 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Pfam PF13091 PLD-like domain 56 155 8.2E-12 T 10-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Pfam PF04851 Type III restriction enzyme, res subunit 214 364 8.6E-32 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Gene3D G3DSA:3.30.870.10 24 199 7.8E-29 T 10-10-2018 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Pfam PF00271 Helicase conserved C-terminal domain 444 538 5.5E-13 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Gene3D G3DSA:3.40.50.300 404 574 2.3E-34 T 10-10-2018 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 SMART SM00487 211 383 4.4E-11 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 SMART SM00490 456 540 2.9E-10 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Gene3D G3DSA:3.40.50.300 200 379 5.7E-43 T 10-10-2018 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 SUPERFAMILY SSF52540 261 561 2.67E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 Pfam PF11907 Domain of unknown function (DUF3427) 683 960 7.3E-76 T 10-10-2018 IPR021835 Protein of unknown function DUF3427 AMQ28_07325 101bcb7e2b3fa690631bc29df208da79 963 SUPERFAMILY SSF56024 67 159 4.71E-10 T 10-10-2018 AMQ28_07750 c163aebb15558c6c1e09983d19687ac2 362 Gene3D G3DSA:3.40.50.2000 14 355 5.3E-41 T 10-10-2018 AMQ28_07750 c163aebb15558c6c1e09983d19687ac2 362 Pfam PF00534 Glycosyl transferases group 1 183 340 9.2E-31 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_07750 c163aebb15558c6c1e09983d19687ac2 362 SUPERFAMILY SSF53756 4 360 3.19E-51 T 10-10-2018 AMQ28_07750 c163aebb15558c6c1e09983d19687ac2 362 Gene3D G3DSA:3.40.50.2000 171 345 5.3E-41 T 10-10-2018 AMQ28_11815 bd288a62e564f8eee8985fbb283cd024 305 Pfam PF01734 Patatin-like phospholipase 42 198 1.3E-25 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMQ28_11815 bd288a62e564f8eee8985fbb283cd024 305 SUPERFAMILY SSF52151 36 278 2.59E-56 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_11815 bd288a62e564f8eee8985fbb283cd024 305 Gene3D G3DSA:3.40.1090.10 24 138 5.6E-26 T 10-10-2018 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 Pfam PF00664 ABC transporter transmembrane region 22 297 1.2E-24 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 Pfam PF00005 ABC transporter 362 507 1.2E-32 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 SUPERFAMILY SSF90123 9 333 4.19E-50 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 SUPERFAMILY SSF52540 337 575 4.5E-75 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06695 0db65ae1011940decd036ed69455470e 600 Gene3D G3DSA:1.20.1560.10 6 329 1.7E-46 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_06695 0db65ae1011940decd036ed69455470e 600 SMART SM00382 371 560 1.7E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_06695 0db65ae1011940decd036ed69455470e 600 Gene3D G3DSA:3.40.50.300 339 592 1.9E-76 T 10-10-2018 AMQ28_12345 dfe1076837c8b669eb14f806c2a0be2e 254 Gene3D G3DSA:3.60.21.10 1 219 1.1E-27 T 10-10-2018 IPR029052 Metallo-dependent phosphatase-like AMQ28_12345 dfe1076837c8b669eb14f806c2a0be2e 254 SUPERFAMILY SSF56300 2 236 1.57E-38 T 10-10-2018 AMQ28_12345 dfe1076837c8b669eb14f806c2a0be2e 254 Pfam PF00149 Calcineurin-like phosphoesterase 2 189 1.9E-13 T 10-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMQ28_12740 b3c724604849c4d67feaaa0483cda3da 227 Gene3D G3DSA:3.30.1370.110 93 223 2.6E-32 T 10-10-2018 AMQ28_12740 b3c724604849c4d67feaaa0483cda3da 227 SMART SM00463 137 218 8.2E-9 T 10-10-2018 IPR002625 Smr domain AMQ28_12740 b3c724604849c4d67feaaa0483cda3da 227 SUPERFAMILY SSF160443 142 218 1.7E-13 T 10-10-2018 IPR036063 Smr domain superfamily AMQ28_12740 b3c724604849c4d67feaaa0483cda3da 227 Pfam PF01713 Smr domain 142 218 2.0E-19 T 10-10-2018 IPR002625 Smr domain AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 331 48.928 T 10-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 10-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 SUPERFAMILY SSF51395 13 305 2.63E-69 T 10-10-2018 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 14 322 4.6E-139 T 10-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 Pfam PF01207 Dihydrouridine synthase (Dus) 17 317 1.4E-85 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 Gene3D G3DSA:3.20.20.70 11 251 1.8E-71 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 Gene3D G3DSA:1.20.120.1460 255 328 2.6E-17 T 10-10-2018 AMQ28_10635 7119a16f7c65ff825b448c31ad03e270 346 PIRSF PIRSF006621 3 331 2.9E-76 T 10-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMQ28_04020 488399d45ce1d15abec5454bebe5c1e5 330 SUPERFAMILY SSF52151 60 309 1.74E-55 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_04020 488399d45ce1d15abec5454bebe5c1e5 330 Gene3D G3DSA:3.40.1090.20 158 271 1.9E-7 T 10-10-2018 AMQ28_04020 488399d45ce1d15abec5454bebe5c1e5 330 Gene3D G3DSA:3.40.1090.10 47 157 2.2E-31 T 10-10-2018 AMQ28_04020 488399d45ce1d15abec5454bebe5c1e5 330 Pfam PF01734 Patatin-like phospholipase 65 222 7.1E-27 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMQ28_08625 209e2f26f8f3c88ccaef51fb979279f7 284 Pfam PF03799 Cell division protein FtsQ 132 245 7.8E-17 T 10-10-2018 IPR005548 Cell division protein FtsQ/DivIB AMQ28_08625 209e2f26f8f3c88ccaef51fb979279f7 284 Pfam PF08478 POTRA domain, FtsQ-type 60 127 4.8E-12 T 10-10-2018 IPR013685 POTRA domain, FtsQ-type AMQ28_08625 209e2f26f8f3c88ccaef51fb979279f7 284 Gene3D G3DSA:3.40.50.11690 130 258 5.8E-32 T 10-10-2018 AMQ28_08625 209e2f26f8f3c88ccaef51fb979279f7 284 Gene3D G3DSA:3.10.20.310 59 127 8.0E-13 T 10-10-2018 AMQ28_08625 209e2f26f8f3c88ccaef51fb979279f7 284 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 32 253 21.944 T 10-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 AMQ28_04055 e00f5b3d13ea5dcf3856c0f3407fd8ea 186 Pfam PF14317 YcxB-like protein 108 176 1.5E-18 T 10-10-2018 IPR025588 YcxB-like protein AMQ28_13075 f9e9e81d7460a8da0789ffce80001b40 62 Gene3D G3DSA:1.10.260.40 9 60 4.4E-7 T 10-10-2018 AMQ28_13075 f9e9e81d7460a8da0789ffce80001b40 62 SUPERFAMILY SSF47413 15 57 2.14E-7 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 SMART SM01091 428 508 1.4E-12 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 SUPERFAMILY SSF54631 284 418 8.21E-21 T 10-10-2018 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 Pfam PF03741 Integral membrane protein TerC family 14 204 4.9E-48 T 10-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 Gene3D G3DSA:3.10.580.10 277 429 2.6E-39 T 10-10-2018 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 Gene3D G3DSA:3.30.465.10 430 507 6.3E-11 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 SUPERFAMILY SSF56176 423 506 2.21E-12 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_01595 29361def9c1469bba7dd57ecb7569dec 508 Pfam PF03471 Transporter associated domain 429 505 4.5E-13 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_01900 3ad2b29ec5d95cf90a54485cc9e2fe07 259 Pfam PF13566 Domain of unknown function (DUF4130 84 256 3.1E-48 T 10-10-2018 IPR025404 Domain of unknown function DUF4130 AMQ28_01900 3ad2b29ec5d95cf90a54485cc9e2fe07 259 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 4 257 2.3E-78 T 10-10-2018 IPR023875 DNA metabolism protein, putative AMQ28_01735 4d84469e96ecc7f97863f6f8ebd4e286 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 134 5.7E-24 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMQ28_01735 4d84469e96ecc7f97863f6f8ebd4e286 141 Gene3D G3DSA:3.30.420.270 60 131 9.0E-7 T 10-10-2018 AMQ28_08755 ffbe57bb1a64841725ddf99a7d3451ee 244 Gene3D G3DSA:3.40.50.360 3 183 1.6E-39 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_08755 ffbe57bb1a64841725ddf99a7d3451ee 244 Pfam PF03358 NADPH-dependent FMN reductase 11 155 1.6E-29 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMQ28_08755 ffbe57bb1a64841725ddf99a7d3451ee 244 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 11 183 8.6E-71 T 10-10-2018 IPR019912 FMN reductase, MsuE-like AMQ28_08755 ffbe57bb1a64841725ddf99a7d3451ee 244 SUPERFAMILY SSF52218 7 182 2.79E-29 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 Pfam PF00561 alpha/beta hydrolase fold 49 358 3.0E-32 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 19 372 1.5E-139 T 10-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 Gene3D G3DSA:3.40.50.1820 24 359 1.8E-138 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 Gene3D G3DSA:1.10.1740.110 186 291 1.8E-138 T 10-10-2018 AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 SUPERFAMILY SSF53474 11 374 1.07E-98 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 13 373 29.06 T 10-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMQ28_05570 2769f121fa50f0b7d88eb2453e483591 386 PIRSF PIRSF000443 2 380 6.2E-132 T 10-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 AMQ28_13855 0db2c24d4477fe99e631df6289221fe4 165 Pfam PF03938 Outer membrane protein (OmpH-like) 10 160 7.7E-21 T 10-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMQ28_13855 0db2c24d4477fe99e631df6289221fe4 165 SUPERFAMILY SSF111384 20 162 4.97E-22 T 10-10-2018 AMQ28_13855 0db2c24d4477fe99e631df6289221fe4 165 SMART SM00935 10 162 4.2E-25 T 10-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMQ28_13855 0db2c24d4477fe99e631df6289221fe4 165 Gene3D G3DSA:3.30.910.20 7 165 5.9E-23 T 10-10-2018 IPR024930 Skp domain superfamily AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 Pfam PF04461 Protein of unknown function (DUF520) 2 161 5.8E-61 T 10-10-2018 IPR007551 Protein of unknown function DUF520 AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 Gene3D G3DSA:3.30.70.860 96 162 6.9E-29 T 10-10-2018 IPR035571 UPF0234-like, C-terminal AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 162 25.239 T 10-10-2018 IPR007551 Protein of unknown function DUF520 AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 SUPERFAMILY SSF89963 2 88 7.32E-28 T 10-10-2018 IPR036183 YajQ-like superfamily AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 Gene3D G3DSA:3.30.70.990 9 95 8.5E-28 T 10-10-2018 IPR035570 UPF0234, N-terminal AMQ28_10580 1fe32b93c2bbe051d4200f738827864c 162 SUPERFAMILY SSF89963 90 162 6.8E-27 T 10-10-2018 IPR036183 YajQ-like superfamily AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 314 327 5.7E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 338 350 5.7E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 5.7E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 286 300 5.7E-5 T 10-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 Gene3D G3DSA:3.40.50.300 185 494 6.2E-57 T 10-10-2018 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 491 1.6E-190 T 10-10-2018 IPR004482 Mg chelatase-related protein AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 491 9.9E-29 T 10-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 SUPERFAMILY SSF52540 190 491 3.35E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.7E-46 T 10-10-2018 AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 SMART SM00382 210 389 1.8E-5 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 SUPERFAMILY SSF54211 11 168 2.24E-35 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 Gene3D G3DSA:3.30.230.10 14 169 3.2E-12 T 10-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMQ28_06885 784a809d6f3a12e38704918f8138a872 495 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 1.8E-94 T 10-10-2018 IPR000523 Magnesium chelatase ChlI domain AMQ28_10105 360af9e13d243ba80791e463bb1edfcd 196 Pfam PF03641 Possible lysine decarboxylase 46 175 1.1E-40 T 10-10-2018 IPR031100 LOG family AMQ28_10105 360af9e13d243ba80791e463bb1edfcd 196 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 177 7.6E-60 T 10-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMQ28_10105 360af9e13d243ba80791e463bb1edfcd 196 Gene3D G3DSA:3.40.50.450 1 193 8.6E-73 T 10-10-2018 AMQ28_10105 360af9e13d243ba80791e463bb1edfcd 196 SUPERFAMILY SSF102405 1 179 4.12E-60 T 10-10-2018 AMQ28_13595 a5c8d49a6fcd8839f3b206bcb665f304 191 Gene3D G3DSA:3.10.180.10 1 178 1.2E-33 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_13595 a5c8d49a6fcd8839f3b206bcb665f304 191 SUPERFAMILY SSF54593 2 140 2.28E-36 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_13595 a5c8d49a6fcd8839f3b206bcb665f304 191 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 116 135 - T 10-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 AMQ28_13595 a5c8d49a6fcd8839f3b206bcb665f304 191 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 136 5.7E-15 T 10-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMQ28_11065 f0d3adfe29eead38f3a7a1aaa4341794 214 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 210 38.621 T 10-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMQ28_11065 f0d3adfe29eead38f3a7a1aaa4341794 214 Gene3D G3DSA:3.20.20.70 2 209 1.5E-65 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_11065 f0d3adfe29eead38f3a7a1aaa4341794 214 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 205 1.2E-57 T 10-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMQ28_11065 f0d3adfe29eead38f3a7a1aaa4341794 214 SUPERFAMILY SSF51366 4 207 5.02E-60 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_08595 53515a1db4a0d2d7a250c806e366d22f 150 SMART SM00347 28 126 7.4E-14 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_08595 53515a1db4a0d2d7a250c806e366d22f 150 Pfam PF01047 MarR family 35 91 2.7E-11 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_08595 53515a1db4a0d2d7a250c806e366d22f 150 SUPERFAMILY SSF46785 2 142 5.09E-27 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_08595 53515a1db4a0d2d7a250c806e366d22f 150 Gene3D G3DSA:1.10.10.10 4 139 3.5E-25 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 SUPERFAMILY SSF63411 32 254 6.17E-49 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Gene3D G3DSA:3.30.830.10 501 713 1.8E-22 T 10-10-2018 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 65 88 - T 10-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 SUPERFAMILY SSF63411 292 466 4.4E-14 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Gene3D G3DSA:3.30.830.10 277 456 6.4E-23 T 10-10-2018 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Pfam PF05193 Peptidase M16 inactive domain 200 372 9.9E-18 T 10-10-2018 IPR007863 Peptidase M16, C-terminal AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Pfam PF05193 Peptidase M16 inactive domain 669 847 8.0E-26 T 10-10-2018 IPR007863 Peptidase M16, C-terminal AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Pfam PF00675 Insulinase (Peptidase family M16) 45 188 4.3E-16 T 10-10-2018 IPR011765 Peptidase M16, N-terminal AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Gene3D G3DSA:3.30.830.10 733 915 3.1E-35 T 10-10-2018 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 SUPERFAMILY SSF63411 496 713 1.4E-25 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 Gene3D G3DSA:3.30.830.10 29 252 2.1E-54 T 10-10-2018 AMQ28_02110 0b86fa0a8f302f65ce48f4ef3099845b 922 SUPERFAMILY SSF63411 751 911 2.33E-27 T 10-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMQ28_00060 7f08ad4153e12efbd410dd24ada95f54 363 Gene3D G3DSA:3.40.50.1820 37 362 3.3E-23 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00060 7f08ad4153e12efbd410dd24ada95f54 363 SUPERFAMILY SSF53474 46 358 7.07E-28 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00060 7f08ad4153e12efbd410dd24ada95f54 363 Pfam PF00561 alpha/beta hydrolase fold 75 339 1.6E-14 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_11315 84c46cddd29591ace5e6241585a8c6a6 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 160 6.8E-18 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_11315 84c46cddd29591ace5e6241585a8c6a6 726 Gene3D G3DSA:2.40.170.20 173 723 4.1E-93 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_11315 84c46cddd29591ace5e6241585a8c6a6 726 Gene3D G3DSA:2.170.130.10 33 171 4.3E-20 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_11315 84c46cddd29591ace5e6241585a8c6a6 726 Pfam PF00593 TonB dependent receptor 261 723 1.2E-45 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_11315 84c46cddd29591ace5e6241585a8c6a6 726 SUPERFAMILY SSF56935 35 722 4.03E-113 T 10-10-2018 AMQ28_11225 340ad2cbaa26b9f7aaabee274a1bf349 217 SUPERFAMILY SSF47616 91 207 2.27E-16 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_11225 340ad2cbaa26b9f7aaabee274a1bf349 217 SUPERFAMILY SSF52833 9 87 2.41E-15 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_11225 340ad2cbaa26b9f7aaabee274a1bf349 217 Gene3D G3DSA:3.40.30.10 11 203 1.8E-57 T 10-10-2018 AMQ28_11225 340ad2cbaa26b9f7aaabee274a1bf349 217 Gene3D G3DSA:1.20.1050.10 87 195 1.8E-57 T 10-10-2018 AMQ28_11225 340ad2cbaa26b9f7aaabee274a1bf349 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 11 78 1.2E-12 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.4E-33 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.4E-33 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.4E-33 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.4E-33 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Gene3D G3DSA:3.40.50.300 4 278 4.5E-152 T 10-10-2018 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 PIRSF PIRSF006641 1 363 1.5E-156 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 SUPERFAMILY SSF52540 3 301 4.44E-83 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Pfam PF01926 50S ribosome-binding GTPase 5 128 8.3E-23 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.6E-159 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Gene3D G3DSA:3.10.20.30 48 361 4.5E-152 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.693 T 10-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Gene3D G3DSA:1.10.150.300 113 200 4.5E-152 T 10-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 4.4E-40 T 10-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AMQ28_13385 ac1a16c4d5a363c3678ac0d0a73c97ce 363 SUPERFAMILY SSF81271 279 360 4.8E-37 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 217 3.1E-97 T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 137 159 - T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 Gene3D G3DSA:3.20.20.70 6 223 2.5E-84 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 204 1.6E-88 T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 PIRSF PIRSF001461 1 227 2.4E-102 T 10-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 SUPERFAMILY SSF51366 4 220 2.04E-76 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_05045 ecf580251989b79826d24d75fdc59c24 228 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 10-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMQ28_08650 f102bb597274a5cf0f5a3daca94e96dc 227 Gene3D G3DSA:2.70.70.10 69 226 2.0E-43 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_08650 f102bb597274a5cf0f5a3daca94e96dc 227 Pfam PF01551 Peptidase family M23 125 219 2.1E-30 T 10-10-2018 IPR016047 Peptidase M23 AMQ28_08650 f102bb597274a5cf0f5a3daca94e96dc 227 SUPERFAMILY SSF51261 69 223 3.56E-51 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 SUPERFAMILY SSF53137 15 128 5.89E-47 T 10-10-2018 AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 ProSitePatterns PS00054 Ribosomal protein S11 signature. 96 118 - T 10-10-2018 IPR018102 Ribosomal S11, conserved site AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 Gene3D G3DSA:3.30.420.80 1 128 5.6E-54 T 10-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 3.1E-54 T 10-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 Pfam PF00411 Ribosomal protein S11 18 127 3.5E-50 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 PIRSF PIRSF002131 1 128 1.2E-51 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMQ28_10300 573b8f088b6ec57a2b4f16fedc0d13b2 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.395 T 10-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMQ28_00980 05abd0d1b4ffc5c17f10d84d22f99c0d 450 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_00980 05abd0d1b4ffc5c17f10d84d22f99c0d 450 Gene3D G3DSA:1.20.1250.20 16 439 5.6E-73 T 10-10-2018 AMQ28_00980 05abd0d1b4ffc5c17f10d84d22f99c0d 450 Pfam PF07690 Major Facilitator Superfamily 28 321 2.1E-34 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00980 05abd0d1b4ffc5c17f10d84d22f99c0d 450 SUPERFAMILY SSF103473 8 442 2.35E-83 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_00980 05abd0d1b4ffc5c17f10d84d22f99c0d 450 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 6 407 9.2E-134 T 10-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 Gene3D G3DSA:3.20.20.70 7 298 1.6E-117 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 Pfam PF00701 Dihydrodipicolinate synthetase family 9 294 1.6E-104 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 139 169 - T 10-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 293 6.1E-113 T 10-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 10-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 SMART SM01130 7 296 2.2E-144 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 294 66.581 T 10-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 SUPERFAMILY SSF51569 7 295 1.26E-104 T 10-10-2018 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 6.0E-35 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 6.0E-35 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 6.0E-35 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 6.0E-35 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_08405 ac96dc30a1753127de7b5946df2c8674 299 PIRSF PIRSF001365 3 298 6.3E-95 T 10-10-2018 IPR002220 DapA-like GO:0016829 AMQ28_12110 ee029d3d5559f8d7b57494a738803096 193 Gene3D G3DSA:2.50.20.10 22 192 2.2E-31 T 10-10-2018 AMQ28_12110 ee029d3d5559f8d7b57494a738803096 193 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 9 191 2.8E-28 T 10-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AMQ28_12110 ee029d3d5559f8d7b57494a738803096 193 SUPERFAMILY SSF89392 21 191 6.28E-32 T 10-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMQ28_12110 ee029d3d5559f8d7b57494a738803096 193 Pfam PF03550 Outer membrane lipoprotein LolB 42 192 1.5E-36 T 10-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AMQ28_01870 3dcfd52c450ad93136a85e2f98a3f77a 73 Pfam PF07866 Protein of unknown function (DUF1653) 6 67 1.2E-27 T 10-10-2018 IPR023387 DUF1653-like domain AMQ28_01870 3dcfd52c450ad93136a85e2f98a3f77a 73 Gene3D G3DSA:2.30.30.320 1 73 9.7E-29 T 10-10-2018 IPR037135 DUF1653-like domain superfamily AMQ28_06910 2d01d97a9ea20d4e0358182a2a011b54 132 Pfam PF01124 MAPEG family 8 129 2.4E-24 T 10-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AMQ28_06910 2d01d97a9ea20d4e0358182a2a011b54 132 SUPERFAMILY SSF161084 7 129 9.42E-28 T 10-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMQ28_06910 2d01d97a9ea20d4e0358182a2a011b54 132 Gene3D G3DSA:1.20.120.550 3 131 1.2E-17 T 10-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 Pfam PF08238 Sel1 repeat 135 158 0.23 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 Pfam PF08238 Sel1 repeat 55 98 0.087 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 Pfam PF08238 Sel1 repeat 19 53 0.001 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 Pfam PF08238 Sel1 repeat 99 133 0.026 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 SUPERFAMILY SSF81901 38 165 1.22E-21 T 10-10-2018 AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 SMART SM00671 19 53 0.12 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 SMART SM00671 61 98 160.0 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 SMART SM00671 99 134 0.054 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 SMART SM00671 135 170 63.0 T 10-10-2018 IPR006597 Sel1-like repeat AMQ28_03385 ab3e28f9b45945ac9aff21cbae2be7f1 171 Gene3D G3DSA:1.25.40.10 2 171 2.2E-33 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 SUPERFAMILY SSF51735 400 528 1.83E-31 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 Pfam PF00999 Sodium/hydrogen exchanger family 10 370 2.8E-70 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 Gene3D G3DSA:1.20.1530.20 1 380 4.4E-87 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 Gene3D G3DSA:3.40.50.720 398 559 8.4E-37 T 10-10-2018 AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 279 1.4E-78 T 10-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AMQ28_06430 fd31293e612385250d0734c2ce880c63 612 Pfam PF02254 TrkA-N domain 401 512 4.3E-25 T 10-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 TIGRFAM TIGR01298 RNaseT: ribonuclease T 13 207 1.3E-83 T 10-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 SUPERFAMILY SSF53098 11 209 7.59E-53 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 Pfam PF00929 Exonuclease 23 200 3.3E-31 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 SMART SM00479 21 209 6.8E-18 T 10-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 Hamap MF_00157 Ribonuclease T [rnt]. 1 219 88.773 T 10-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AMQ28_12635 fa02434060d8cb9780373b74f30d5432 219 Gene3D G3DSA:3.30.420.10 13 210 1.3E-46 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 Pfam PF02132 RecR protein 41 77 3.5E-12 T 10-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 94.087 T 10-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 Gene3D G3DSA:1.10.8.420 2 51 1.3E-13 T 10-10-2018 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 Gene3D G3DSA:3.40.1360.10 76 197 2.3E-44 T 10-10-2018 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 Pfam PF13662 Toprim domain 81 170 3.5E-24 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 10-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 SUPERFAMILY SSF111304 3 197 1.31E-74 T 10-10-2018 IPR023627 Recombination protein RecR AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 194 1.9E-73 T 10-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMQ28_00075 0026f31281ad5f81b67455e1b39af2d4 198 SMART SM00493 79 164 2.2E-16 T 10-10-2018 IPR006171 TOPRIM domain AMQ28_02785 9ddc2d8474c82a8ef5da4908097e7887 459 Gene3D G3DSA:1.10.3720.10 223 457 5.5E-35 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_02785 9ddc2d8474c82a8ef5da4908097e7887 459 Pfam PF12501 Phosphate ATP-binding cassette transporter 8 180 5.3E-35 T 10-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 AMQ28_02785 9ddc2d8474c82a8ef5da4908097e7887 459 SUPERFAMILY SSF161098 203 446 1.96E-33 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_02785 9ddc2d8474c82a8ef5da4908097e7887 459 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 164 454 1.5E-86 T 10-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMQ28_02785 9ddc2d8474c82a8ef5da4908097e7887 459 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 454 7.2E-16 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_03195 ee140cb2af046f4595991925a38fe3b6 406 Pfam PF01594 AI-2E family transporter 10 342 1.9E-58 T 10-10-2018 IPR002549 Transmembrane protein TqsA-like AMQ28_02575 3cebf8dc3a9247a19253299a336aaa1d 203 SUPERFAMILY SSF161111 14 198 5.49E-34 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_02575 3cebf8dc3a9247a19253299a336aaa1d 203 Gene3D G3DSA:1.20.1510.10 73 197 9.6E-7 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_02575 3cebf8dc3a9247a19253299a336aaa1d 203 Pfam PF01545 Cation efflux family 20 196 4.3E-13 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMQ28_00010 f2c81f8444cb0905247616bbbbb2f3c0 381 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 364 9.4E-104 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_00010 f2c81f8444cb0905247616bbbbb2f3c0 381 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 381 8.1E-151 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_00010 f2c81f8444cb0905247616bbbbb2f3c0 381 PIRSF PIRSF000267 2 380 4.3E-118 T 10-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMQ28_00345 050c7effda5226e7aab800f8701fdc5b 122 Pfam PF02635 DsrE/DsrF-like family 1 122 5.5E-21 T 10-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein AMQ28_00345 050c7effda5226e7aab800f8701fdc5b 122 SUPERFAMILY SSF75169 1 122 1.28E-28 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_00345 050c7effda5226e7aab800f8701fdc5b 122 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 122 1.7E-34 T 10-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AMQ28_00345 050c7effda5226e7aab800f8701fdc5b 122 Gene3D G3DSA:3.40.1260.10 1 122 2.5E-35 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Gene3D G3DSA:3.50.50.60 272 621 4.4E-73 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 271 624 1.4E-70 T 10-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 239 1.3E-19 T 10-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 SUPERFAMILY SSF51971 269 603 2.0E-20 T 10-10-2018 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Gene3D G3DSA:3.40.50.150 12 250 2.7E-62 T 10-10-2018 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Pfam PF01266 FAD dependent oxidoreductase 272 596 1.1E-24 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Gene3D G3DSA:3.30.9.10 349 559 4.4E-73 T 10-10-2018 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 6 623 18.52 T 10-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 PRINTS PR00419 Adrenodoxin reductase family signature 294 307 4.4E-5 T 10-10-2018 AMQ28_10590 c7ad69b47c74928689ea6f119787698d 635 PRINTS PR00419 Adrenodoxin reductase family signature 271 293 4.4E-5 T 10-10-2018 AMQ28_13100 4740543c752a3f8d9a0294a08b3a8579 92 SUPERFAMILY SSF46785 27 89 3.88E-5 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_13100 4740543c752a3f8d9a0294a08b3a8579 92 Pfam PF13463 Winged helix DNA-binding domain 27 83 1.2E-4 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 Pfam PF09383 NIL domain 266 335 9.9E-19 T 10-10-2018 IPR018449 NIL domain AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 SMART SM00382 30 218 3.2E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 SUPERFAMILY SSF55021 250 336 4.58E-20 T 10-10-2018 AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 Gene3D G3DSA:3.40.50.300 1 232 1.1E-72 T 10-10-2018 AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 SMART SM00930 262 337 2.1E-19 T 10-10-2018 IPR018449 NIL domain AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 SUPERFAMILY SSF52540 1 240 2.03E-81 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 Pfam PF00005 ABC transporter 21 169 1.0E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_13750 1f8121cb1ebb86327d7f40c8574c9ab7 341 Gene3D G3DSA:3.30.70.260 233 339 3.1E-27 T 10-10-2018 AMQ28_00865 9c65e0dfa5243951de7712fe9a7f30d8 302 Gene3D G3DSA:3.90.1580.10 46 197 6.4E-37 T 10-10-2018 AMQ28_00865 9c65e0dfa5243951de7712fe9a7f30d8 302 SUPERFAMILY SSF56436 57 295 2.1E-59 T 10-10-2018 IPR016187 C-type lectin fold AMQ28_00865 9c65e0dfa5243951de7712fe9a7f30d8 302 Gene3D G3DSA:3.90.1580.10 198 301 2.3E-26 T 10-10-2018 AMQ28_00865 9c65e0dfa5243951de7712fe9a7f30d8 302 Pfam PF03781 Sulfatase-modifying factor enzyme 1 198 294 3.4E-23 T 10-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMQ28_00865 9c65e0dfa5243951de7712fe9a7f30d8 302 Pfam PF03781 Sulfatase-modifying factor enzyme 1 55 193 6.5E-29 T 10-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMQ28_09710 855a9222fa1d0f802e66a352d9c59615 267 SUPERFAMILY SSF53335 6 250 1.23E-41 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_09710 855a9222fa1d0f802e66a352d9c59615 267 PIRSF PIRSF018249 1 267 8.3E-83 T 10-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AMQ28_09710 855a9222fa1d0f802e66a352d9c59615 267 Gene3D G3DSA:3.40.50.150 3 267 7.3E-72 T 10-10-2018 AMQ28_09710 855a9222fa1d0f802e66a352d9c59615 267 Pfam PF08241 Methyltransferase domain 88 172 6.2E-12 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMQ28_02185 fc51c556c9409d465f194fa9469225fb 128 Gene3D G3DSA:3.90.1590.10 1 113 3.5E-16 T 10-10-2018 AMQ28_02185 fc51c556c9409d465f194fa9469225fb 128 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 111 4.1E-17 T 10-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMQ28_02185 fc51c556c9409d465f194fa9469225fb 128 SUPERFAMILY SSF51316 1 120 4.6E-32 T 10-10-2018 IPR011057 Mss4-like superfamily AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 SUPERFAMILY SSF51905 10 472 4.71E-79 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 SUPERFAMILY SSF56425 246 364 5.98E-42 T 10-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 SUPERFAMILY SSF46977 486 632 4.97E-39 T 10-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 53 62 - T 10-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 Gene3D G3DSA:1.20.58.100 468 580 3.5E-30 T 10-10-2018 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 17 632 2.9E-257 T 10-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 19 631 1.9E-225 T 10-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 Pfam PF02910 Fumarate reductase flavoprotein C-term 496 631 5.2E-34 T 10-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 Pfam PF00890 FAD binding domain 19 437 5.8E-114 T 10-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12235 24a382835ced3ad6f58587d63d9ffad3 632 PIRSF PIRSF000171 8 613 8.4E-33 T 10-10-2018 AMQ28_07225 9b40728d432f7f28507fcf8ceba95780 315 Pfam PF02678 Pirin 40 138 1.5E-28 T 10-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMQ28_07225 9b40728d432f7f28507fcf8ceba95780 315 PIRSF PIRSF006232 20 299 3.6E-74 T 10-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMQ28_07225 9b40728d432f7f28507fcf8ceba95780 315 Gene3D G3DSA:2.60.120.10 18 263 8.7E-60 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_07225 9b40728d432f7f28507fcf8ceba95780 315 Pfam PF05726 Pirin C-terminal cupin domain 190 287 2.9E-18 T 10-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMQ28_07225 9b40728d432f7f28507fcf8ceba95780 315 SUPERFAMILY SSF51182 34 300 1.63E-68 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 87 118 1.2E-10 T 10-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 ProSitePatterns PS00893 Nudix box signature. 154 175 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 Pfam PF00293 NUDIX domain 123 229 4.0E-19 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 Gene3D G3DSA:3.90.79.10 120 249 6.0E-40 T 10-10-2018 AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 Gene3D G3DSA:3.90.79.20 3 119 4.6E-21 T 10-10-2018 AMQ28_12560 a9cade4af97f5548b8e428eca2cc7420 257 SUPERFAMILY SSF55811 71 238 7.47E-44 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_01345 c6c349b3ec8bc1950714e087a6dca4e5 333 SUPERFAMILY SSF51679 8 329 8.37E-84 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_01345 c6c349b3ec8bc1950714e087a6dca4e5 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 329 2.7E-126 T 10-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AMQ28_01345 c6c349b3ec8bc1950714e087a6dca4e5 333 Gene3D G3DSA:3.20.20.30 4 332 6.0E-91 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_01345 c6c349b3ec8bc1950714e087a6dca4e5 333 Pfam PF00296 Luciferase-like monooxygenase 24 301 1.8E-37 T 10-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMQ28_09330 b564c661001bdbce41d76dd5c4139b7f 142 Gene3D G3DSA:3.10.129.10 3 135 3.2E-42 T 10-10-2018 AMQ28_09330 b564c661001bdbce41d76dd5c4139b7f 142 SUPERFAMILY SSF54637 3 132 8.23E-36 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_09330 b564c661001bdbce41d76dd5c4139b7f 142 PIRSF PIRSF003230 5 138 6.2E-21 T 10-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMQ28_09330 b564c661001bdbce41d76dd5c4139b7f 142 Pfam PF13279 Thioesterase-like superfamily 15 130 2.3E-19 T 10-10-2018 AMQ28_04810 efebaab64c0ea632abedfaa5c35b9637 220 Pfam PF04315 Elongation factor P hydroxylase 53 214 1.6E-59 T 10-10-2018 IPR007411 Elongation factor P hydroxylase AMQ28_05080 fa01dde7fbc0465692d6bb3a73ae9b03 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 123 1.4E-10 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_05080 fa01dde7fbc0465692d6bb3a73ae9b03 176 SUPERFAMILY SSF51161 20 170 5.82E-44 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_05080 fa01dde7fbc0465692d6bb3a73ae9b03 176 Gene3D G3DSA:2.160.10.10 1 174 1.7E-62 T 10-10-2018 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 20 71 8.0E-23 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.908 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 4.6E-35 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.1E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.1E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.1E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.1E-18 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 10-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Gene3D G3DSA:4.10.640.10 1 75 6.2E-27 T 10-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 SUPERFAMILY SSF46911 3 74 2.62E-28 T 10-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01410 3b5a05a330e9d41dcb4c44dd5ef1274d 75 Pfam PF01084 Ribosomal protein S18 18 68 1.3E-23 T 10-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Pfam PF00394 Multicopper oxidase 159 330 3.3E-24 T 10-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 25 590 9.2E-195 T 10-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Gene3D G3DSA:2.60.40.420 454 597 2.9E-31 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Gene3D G3DSA:2.60.40.420 15 144 8.9E-38 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 SUPERFAMILY SSF49503 18 173 1.77E-34 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 ProSitePatterns PS00079 Multicopper oxidases signature 1. 568 588 - T 10-10-2018 IPR033138 Multicopper oxidases, conserved site AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Pfam PF07731 Multicopper oxidase 479 592 3.1E-25 T 10-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Gene3D G3DSA:2.60.40.420 155 365 3.7E-36 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 Pfam PF07732 Multicopper oxidase 32 146 2.1E-35 T 10-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 SUPERFAMILY SSF49503 156 360 4.49E-40 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 SUPERFAMILY SSF49503 438 590 6.19E-34 T 10-10-2018 IPR008972 Cupredoxin AMQ28_05035 a92f50f9416dca3bed3e1f1f4130cfbf 617 ProSitePatterns PS00080 Multicopper oxidases signature 2. 573 584 - T 10-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMQ28_02305 16f5b3f0bd5b95e68af265ad9ac135a7 238 Pfam PF02390 Putative methyltransferase 64 230 2.8E-50 T 10-10-2018 AMQ28_02305 16f5b3f0bd5b95e68af265ad9ac135a7 238 Gene3D G3DSA:3.40.50.150 34 238 1.5E-58 T 10-10-2018 AMQ28_02305 16f5b3f0bd5b95e68af265ad9ac135a7 238 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 237 1.1E-52 T 10-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMQ28_02305 16f5b3f0bd5b95e68af265ad9ac135a7 238 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 26 237 29.291 T 10-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMQ28_02305 16f5b3f0bd5b95e68af265ad9ac135a7 238 SUPERFAMILY SSF53335 46 235 7.26E-27 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 SUPERFAMILY SSF53850 92 294 5.12E-44 T 10-10-2018 AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 Gene3D G3DSA:1.10.10.10 1 87 4.5E-24 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 Gene3D G3DSA:3.40.190.10 92 289 1.1E-63 T 10-10-2018 AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 SUPERFAMILY SSF46785 5 113 1.4E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 Pfam PF03466 LysR substrate binding domain 90 292 1.7E-44 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 Gene3D G3DSA:3.40.190.10 164 263 1.1E-63 T 10-10-2018 AMQ28_07830 e311bcb8cc3e740090f9801072ea7592 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.5E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_07280 ff7a38d7f54fb212e1766753528eb6e8 103 Pfam PF01722 BolA-like protein 13 85 3.6E-23 T 10-10-2018 IPR002634 BolA protein AMQ28_07280 ff7a38d7f54fb212e1766753528eb6e8 103 SUPERFAMILY SSF82657 3 88 1.11E-25 T 10-10-2018 IPR036065 BolA-like superfamily AMQ28_07280 ff7a38d7f54fb212e1766753528eb6e8 103 Gene3D G3DSA:3.30.300.90 2 90 8.1E-24 T 10-10-2018 AMQ28_07280 ff7a38d7f54fb212e1766753528eb6e8 103 PIRSF PIRSF003113 1 100 1.1E-29 T 10-10-2018 IPR002634 BolA protein AMQ28_00390 42cf4a842993ad8d4049a5d85d923d3d 479 PIRSF PIRSF006446 3 461 4.1E-215 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMQ28_00390 42cf4a842993ad8d4049a5d85d923d3d 479 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 438 2.2E-168 T 10-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMQ28_08710 a87045fd4b6b76d12ca73545bffbb99e 358 Gene3D G3DSA:3.20.20.70 1 357 3.4E-127 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08710 a87045fd4b6b76d12ca73545bffbb99e 358 SUPERFAMILY SSF51395 1 351 1.08E-113 T 10-10-2018 AMQ28_08710 a87045fd4b6b76d12ca73545bffbb99e 358 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 329 1.3E-76 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_01715 818f6605721ad96057fc5f9b44318f41 327 Gene3D G3DSA:3.40.50.300 7 172 1.7E-42 T 10-10-2018 AMQ28_01715 818f6605721ad96057fc5f9b44318f41 327 Pfam PF13177 DNA polymerase III, delta subunit 27 174 1.6E-35 T 10-10-2018 AMQ28_01715 818f6605721ad96057fc5f9b44318f41 327 SUPERFAMILY SSF52540 11 214 4.03E-36 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 100 1.4E-18 T 10-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 SUPERFAMILY SSF48179 163 270 1.04E-33 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 Gene3D G3DSA:3.40.50.720 6 164 7.2E-45 T 10-10-2018 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 SUPERFAMILY SSF51735 8 160 5.63E-33 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 267 7.1E-75 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 Gene3D G3DSA:1.10.3730.10 165 272 1.4E-40 T 10-10-2018 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 6.3E-35 T 10-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 PIRSF PIRSF000193 6 270 1.9E-71 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMQ28_05245 77de2c0648bc70319fb53adacfdc946e 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 267 25.854 T 10-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMQ28_02235 61a2d610d44c266282238968bf55b887 151 SMART SM00855 2 111 7.2E-10 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_02235 61a2d610d44c266282238968bf55b887 151 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 72 1.4E-12 T 10-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMQ28_02235 61a2d610d44c266282238968bf55b887 151 Gene3D G3DSA:3.40.50.1240 1 142 6.1E-29 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_02235 61a2d610d44c266282238968bf55b887 151 SUPERFAMILY SSF53254 1 116 1.66E-20 T 10-10-2018 IPR029033 Histidine phosphatase superfamily AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Gene3D G3DSA:3.30.1490.20 21 105 5.7E-88 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Pfam PF08442 ATP-grasp domain 2 203 5.5E-78 T 10-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 SUPERFAMILY SSF56059 1 239 1.04E-77 T 10-10-2018 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 258 282 - T 10-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Pfam PF00549 CoA-ligase 263 382 1.3E-24 T 10-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 PIRSF PIRSF001554 1 388 5.3E-150 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 SUPERFAMILY SSF52210 240 386 5.23E-53 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 386 2.9E-161 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Gene3D G3DSA:3.40.50.261 241 388 1.0E-54 T 10-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Gene3D G3DSA:3.30.470.20 1 235 5.7E-88 T 10-10-2018 AMQ28_12265 ded97a57eacf006f0953693d353313d0 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 42.55 T 10-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMQ28_01945 87edaaf6d618aad482faaabed6bef5d2 346 PIRSF PIRSF005508 1 346 1.2E-132 T 10-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMQ28_01945 87edaaf6d618aad482faaabed6bef5d2 346 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 334 9.0E-129 T 10-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMQ28_01945 87edaaf6d618aad482faaabed6bef5d2 346 Pfam PF01758 Sodium Bile acid symporter family 51 247 2.0E-60 T 10-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMQ28_01945 87edaaf6d618aad482faaabed6bef5d2 346 Gene3D G3DSA:1.20.1530.20 3 340 1.1E-23 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_08335 f8441c0aab3c5b368a6e949955119adb 238 Gene3D G3DSA:3.40.50.150 10 234 3.9E-75 T 10-10-2018 AMQ28_08335 f8441c0aab3c5b368a6e949955119adb 238 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 235 36.8 T 10-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMQ28_08335 f8441c0aab3c5b368a6e949955119adb 238 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 10 229 6.4E-86 T 10-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMQ28_08335 f8441c0aab3c5b368a6e949955119adb 238 SUPERFAMILY SSF53335 14 230 3.98E-51 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_08335 f8441c0aab3c5b368a6e949955119adb 238 Pfam PF13489 Methyltransferase domain 50 203 2.7E-26 T 10-10-2018 AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 28 100 4.8E-8 T 10-10-2018 IPR031982 Type IV minor pilin ComP AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 6 31 2.5E-9 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 42 60 2.5E-9 T 10-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 9.1E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 SUPERFAMILY SSF54523 7 125 1.96E-21 T 10-10-2018 AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 Gene3D G3DSA:3.30.700.10 7 144 2.7E-23 T 10-10-2018 AMQ28_09870 273ab30f53a1941f371eb5580a690584 146 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 5.4E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 Pfam PF00072 Response regulator receiver domain 3 115 1.9E-23 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 SUPERFAMILY SSF52172 1 129 1.04E-28 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.4E-11 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 SMART SM00421 149 206 8.8E-22 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 SUPERFAMILY SSF46894 142 210 2.72E-20 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 6.3E-20 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 SMART SM00448 1 115 2.0E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_08760 0d7dc97488cb35d2bc401ebd96ebc476 216 Gene3D G3DSA:3.40.50.12740 1 210 1.2E-53 T 10-10-2018 AMQ28_07695 537989b624725809dfae4c81c5b31a41 291 Pfam PF00483 Nucleotidyl transferase 5 267 8.0E-24 T 10-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMQ28_07695 537989b624725809dfae4c81c5b31a41 291 SUPERFAMILY SSF53448 3 279 6.98E-55 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_07695 537989b624725809dfae4c81c5b31a41 291 Gene3D G3DSA:3.90.550.10 1 290 3.4E-78 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_07695 537989b624725809dfae4c81c5b31a41 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 267 4.8E-105 T 10-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 SUPERFAMILY SSF51569 4 318 9.94E-100 T 10-10-2018 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 15 313 1.8E-91 T 10-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 Gene3D G3DSA:3.20.20.70 1 324 7.9E-122 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 ProSitePatterns PS00958 Transaldolase active site. 130 147 - T 10-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 TIGRFAM TIGR00874 talAB: transaldolase 5 318 9.2E-125 T 10-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMQ28_01530 091b2e9ccf750611624543544cf77fe6 328 ProSitePatterns PS01054 Transaldolase signature 1. 32 40 - T 10-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 Gene3D G3DSA:3.10.310.10 4 272 7.5E-107 T 10-10-2018 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 SUPERFAMILY SSF54506 3 276 1.81E-54 T 10-10-2018 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 Pfam PF01678 Diaminopimelate epimerase 5 125 7.9E-32 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 Pfam PF01678 Diaminopimelate epimerase 155 267 5.0E-27 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.9E-91 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 38.562 T 10-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 Gene3D G3DSA:3.10.310.10 117 263 7.5E-107 T 10-10-2018 AMQ28_03340 2cc1cdf5cb28d85f2c448eedb04e1a9f 281 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 10-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 Pfam PF00591 Glycosyl transferase family, a/b domain 108 326 1.2E-13 T 10-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 SUPERFAMILY SSF47648 23 81 1.07E-15 T 10-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 SUPERFAMILY SSF52418 87 330 2.62E-59 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 Pfam PF02885 Glycosyl transferase family, helical bundle domain 27 80 3.1E-15 T 10-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 Gene3D G3DSA:3.40.1030.10 85 333 2.2E-58 T 10-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMQ28_02500 2ab32a78cdffbd06881eb399dca9934a 334 Gene3D G3DSA:1.20.970.10 14 83 1.3E-25 T 10-10-2018 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 1.5E-50 T 10-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 1.2E-23 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 1.2E-23 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 1.2E-23 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 1.2E-23 T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 296 1.4E-49 T 10-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 Gene3D G3DSA:3.40.50.1370 134 294 2.0E-111 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 7.1E-30 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 7.1E-30 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 7.1E-30 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 7.1E-30 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 7.1E-30 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 Gene3D G3DSA:3.40.50.1370 4 133 2.0E-111 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 78.973 T 10-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 300 8.3E-115 T 10-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 10-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMQ28_14210 cb76d9916c7474e9e08c96dd6ec6668a 306 SUPERFAMILY SSF53671 2 300 4.06E-102 T 10-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMQ28_10860 79abfa5924ecef03b34bb86aba3730e1 109 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 101 3.1E-26 T 10-10-2018 IPR003849 Preprotein translocase YajC AMQ28_10860 79abfa5924ecef03b34bb86aba3730e1 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 4.6E-12 T 10-10-2018 IPR003849 Preprotein translocase YajC AMQ28_10860 79abfa5924ecef03b34bb86aba3730e1 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 41 59 4.6E-12 T 10-10-2018 IPR003849 Preprotein translocase YajC AMQ28_10860 79abfa5924ecef03b34bb86aba3730e1 109 Pfam PF02699 Preprotein translocase subunit 24 97 1.7E-25 T 10-10-2018 IPR003849 Preprotein translocase YajC AMQ28_10860 79abfa5924ecef03b34bb86aba3730e1 109 SMART SM01323 19 101 1.3E-36 T 10-10-2018 IPR003849 Preprotein translocase YajC AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 SUPERFAMILY SSF75217 73 234 8.72E-46 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 SUPERFAMILY SSF88697 1 66 2.15E-15 T 10-10-2018 IPR015947 PUA-like superfamily AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 Gene3D G3DSA:3.40.1280.10 73 237 1.4E-49 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 PIRSF PIRSF015601 1 237 6.5E-55 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 236 8.4E-59 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 Gene3D G3DSA:2.40.240.20 1 66 2.9E-21 T 10-10-2018 AMQ28_03415 1a3781f500f061504a387b81c92afc40 238 Pfam PF04452 RNA methyltransferase 17 234 3.9E-65 T 10-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 PIRSF PIRSF002158 10 274 1.5E-102 T 10-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 SUPERFAMILY SSF50249 3 124 1.23E-48 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 SUPERFAMILY SSF50104 126 269 3.31E-57 T 10-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Gene3D G3DSA:4.10.950.10 196 273 1.2E-34 T 10-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 5.8E-124 T 10-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 SMART SM01382 124 251 5.9E-85 T 10-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 SMART SM01383 42 118 6.2E-46 T 10-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Gene3D G3DSA:2.40.50.140 1 114 1.3E-48 T 10-10-2018 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 249 1.1E-53 T 10-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.4E-33 T 10-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 44.996 T 10-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMQ28_10200 b131ca4feda9c68a60feb90092b2b6a7 274 Gene3D G3DSA:2.30.30.30 115 195 1.3E-30 T 10-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMQ28_10550 b5a267498d721b570d9f3c2770f8cd5c 141 Gene3D G3DSA:3.90.190.10 21 139 1.1E-24 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_10550 b5a267498d721b570d9f3c2770f8cd5c 141 Pfam PF04273 Putative phosphatase (DUF442) 31 134 3.9E-21 T 10-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMQ28_06220 7f189ba9c1e69a67618d1eecfc957945 351 Pfam PF12706 Beta-lactamase superfamily domain 115 309 3.7E-34 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_06220 7f189ba9c1e69a67618d1eecfc957945 351 SUPERFAMILY SSF56281 96 314 2.23E-28 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_06220 7f189ba9c1e69a67618d1eecfc957945 351 PIRSF PIRSF038896 13 351 5.7E-86 T 10-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AMQ28_06220 7f189ba9c1e69a67618d1eecfc957945 351 Gene3D G3DSA:3.60.15.10 69 350 3.7E-70 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 SMART SM01230 101 379 4.8E-130 T 10-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 Gene3D G3DSA:3.10.20.70 1 103 2.5E-38 T 10-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 Gene3D G3DSA:3.30.590.10 104 457 2.9E-137 T 10-10-2018 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 10-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 94 2.9E-31 T 10-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 2.8E-195 T 10-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 SUPERFAMILY SSF54368 2 99 3.4E-35 T 10-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 SUPERFAMILY SSF55931 101 468 6.38E-129 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 Pfam PF00120 Glutamine synthetase, catalytic domain 101 466 1.4E-131 T 10-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 10-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMQ28_12765 398e26236acddec1db3d0fcc47f173ae 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 10-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 181 34.304 T 10-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 Gene3D G3DSA:3.40.50.1470 1 193 3.3E-74 T 10-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 10-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 SUPERFAMILY SSF53178 5 192 1.96E-68 T 10-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 3.2E-54 T 10-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 10-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMQ28_12070 322c30abac23a3129de42736a560aa1b 193 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 188 2.7E-64 T 10-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMQ28_08510 0823647fd85fc7e8a1a1217dd19ad6bc 194 SUPERFAMILY SSF53474 3 193 4.27E-13 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_08510 0823647fd85fc7e8a1a1217dd19ad6bc 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 3 189 7.3E-39 T 10-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AMQ28_08510 0823647fd85fc7e8a1a1217dd19ad6bc 194 Gene3D G3DSA:3.40.50.1820 1 192 5.7E-47 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13685 44041b82f662e66bfce61540c2714863 197 SUPERFAMILY SSF54980 129 195 1.87E-8 T 10-10-2018 IPR035647 EF-G domain III/V-like AMQ28_13685 44041b82f662e66bfce61540c2714863 197 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 10-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AMQ28_13685 44041b82f662e66bfce61540c2714863 197 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 4.5E-27 T 10-10-2018 IPR001498 Impact, N-terminal AMQ28_13685 44041b82f662e66bfce61540c2714863 197 Gene3D G3DSA:3.30.230.30 1 125 7.4E-43 T 10-10-2018 IPR036956 Impact, N-terminal domain superfamily AMQ28_13685 44041b82f662e66bfce61540c2714863 197 SUPERFAMILY SSF54211 4 122 1.21E-37 T 10-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 PRINTS PR01576 Peptide deformylase signature 121 150 2.6E-37 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 PRINTS PR01576 Peptide deformylase signature 33 62 2.6E-37 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 PRINTS PR01576 Peptide deformylase signature 102 120 2.6E-37 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 PRINTS PR01576 Peptide deformylase signature 90 101 2.6E-37 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.257 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 Pfam PF01327 Polypeptide deformylase 5 153 6.1E-53 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 PIRSF PIRSF004749 1 175 9.5E-59 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 161 6.5E-59 T 10-10-2018 IPR023635 Peptide deformylase AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 SUPERFAMILY SSF56420 2 165 7.59E-63 T 10-10-2018 IPR036821 Peptide deformylase superfamily AMQ28_07045 7548332ad1c334ef6f46ca39d7a5ed08 176 Gene3D G3DSA:3.90.45.10 1 168 1.2E-66 T 10-10-2018 IPR036821 Peptide deformylase superfamily AMQ28_08100 7d65c1a20020e525331b75ca22e41542 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_08100 7d65c1a20020e525331b75ca22e41542 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.1E-26 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_08100 7d65c1a20020e525331b75ca22e41542 44 Pfam PF00468 Ribosomal protein L34 1 44 1.8E-25 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_08100 7d65c1a20020e525331b75ca22e41542 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 10-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_08100 7d65c1a20020e525331b75ca22e41542 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 2.0E-14 T 10-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 3 255 1.5E-103 T 10-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 SUPERFAMILY SSF52374 3 277 7.51E-78 T 10-10-2018 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 Gene3D G3DSA:3.40.50.620 78 214 1.2E-99 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 3 283 37.584 T 10-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 Gene3D G3DSA:3.40.50.620 3 277 1.2E-99 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 235 5.0E-47 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 190 1.6E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 166 176 1.6E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.6E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_06735 ad46ea0b8102205812c4dfb73749a6c9 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.6E-14 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 SUPERFAMILY SSF56601 5 276 2.66E-68 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 Gene3D G3DSA:3.40.710.10 19 279 2.6E-78 T 10-10-2018 AMQ28_12970 0cf4ab7b131958944096902492c27fe2 436 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 29 259 3.2E-62 T 10-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMQ28_10490 4e8e9d36654acff720e97cd5632b0a4a 86 Pfam PF10982 Protein of unknown function (DUF2789) 5 76 5.3E-24 T 10-10-2018 IPR021250 Protein of unknown function DUF2789 AMQ28_10490 4e8e9d36654acff720e97cd5632b0a4a 86 Gene3D G3DSA:1.10.10.1130 1 81 1.4E-24 T 10-10-2018 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 27.593 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 10-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.5E-37 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.5E-37 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.5E-37 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 Pfam PF01016 Ribosomal L27 protein 2 82 6.8E-38 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 4.0E-18 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 Gene3D G3DSA:2.40.50.100 21 85 1.1E-29 T 10-10-2018 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 SUPERFAMILY SSF110324 2 80 4.88E-33 T 10-10-2018 AMQ28_11970 6f7e0fcdbb14e2fd5d226eb9ce53d0a8 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 1.6E-38 T 10-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_07890 537f034cfcb264457f0bb1401c8d1b90 245 Pfam PF01925 Sulfite exporter TauE/SafE 6 237 1.2E-28 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMQ28_00950 65ed26a04e27c7857011ab5c43bff3d2 105 Gene3D G3DSA:2.102.10.10 5 101 1.9E-22 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_00950 65ed26a04e27c7857011ab5c43bff3d2 105 Pfam PF00355 Rieske [2Fe-2S] domain 16 78 5.7E-12 T 10-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMQ28_00950 65ed26a04e27c7857011ab5c43bff3d2 105 SUPERFAMILY SSF50022 16 101 2.49E-20 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_02060 9d2c5daf4434208323bce5af6547a170 300 Gene3D G3DSA:3.30.420.10 122 273 1.0E-12 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_02060 9d2c5daf4434208323bce5af6547a170 300 Pfam PF13276 HTH-like domain 52 103 2.2E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_02060 9d2c5daf4434208323bce5af6547a170 300 SUPERFAMILY SSF53098 122 287 1.27E-35 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_02060 9d2c5daf4434208323bce5af6547a170 300 Pfam PF00665 Integrase core domain 128 242 1.8E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_09575 9d2c5daf4434208323bce5af6547a170 300 Gene3D G3DSA:3.30.420.10 122 273 1.0E-12 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_09575 9d2c5daf4434208323bce5af6547a170 300 Pfam PF13276 HTH-like domain 52 103 2.2E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_09575 9d2c5daf4434208323bce5af6547a170 300 SUPERFAMILY SSF53098 122 287 1.27E-35 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_09575 9d2c5daf4434208323bce5af6547a170 300 Pfam PF00665 Integrase core domain 128 242 1.8E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_04645 7cba5488b6a19e806e0e60f7b64ed765 524 Gene3D G3DSA:3.40.309.10 265 452 1.1E-201 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_04645 7cba5488b6a19e806e0e60f7b64ed765 524 Pfam PF00171 Aldehyde dehydrogenase family 23 455 3.3E-49 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_04645 7cba5488b6a19e806e0e60f7b64ed765 524 Gene3D G3DSA:3.40.605.10 42 517 1.1E-201 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_04645 7cba5488b6a19e806e0e60f7b64ed765 524 SUPERFAMILY SSF53720 18 516 1.31E-104 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_04630 7cba5488b6a19e806e0e60f7b64ed765 524 Gene3D G3DSA:3.40.309.10 265 452 1.1E-201 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_04630 7cba5488b6a19e806e0e60f7b64ed765 524 Pfam PF00171 Aldehyde dehydrogenase family 23 455 3.3E-49 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_04630 7cba5488b6a19e806e0e60f7b64ed765 524 Gene3D G3DSA:3.40.605.10 42 517 1.1E-201 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_04630 7cba5488b6a19e806e0e60f7b64ed765 524 SUPERFAMILY SSF53720 18 516 1.31E-104 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 93 1.5E-34 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 SUPERFAMILY SSF50129 2 95 8.63E-34 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 4 28 - T 10-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 PRINTS PR00297 10kDa chaperonin signature 26 47 1.0E-32 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 PRINTS PR00297 10kDa chaperonin signature 60 72 1.0E-32 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 PRINTS PR00297 10kDa chaperonin signature 4 19 1.0E-32 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 PRINTS PR00297 10kDa chaperonin signature 81 94 1.0E-32 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 SMART SM00883 3 94 2.7E-57 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 Gene3D G3DSA:2.30.33.40 1 96 1.3E-36 T 10-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMQ28_12350 473b06dc29c608e3a398178c5b3aab8a 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 95 26.754 T 10-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 317 3.2E-27 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 Gene3D G3DSA:3.40.50.720 3 312 2.6E-104 T 10-10-2018 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 175 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 285 1.4E-56 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 SUPERFAMILY SSF52283 1 131 6.24E-26 T 10-10-2018 AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 SUPERFAMILY SSF51735 99 286 9.41E-53 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_02195 838282b22f9737805721bbeaaf890f26 321 Gene3D G3DSA:3.40.50.720 96 285 2.6E-104 T 10-10-2018 AMQ28_10610 e53d78c5f84fc5bef5766bd5552ee0bf 283 Pfam PF02811 PHP domain 5 226 6.0E-11 T 10-10-2018 IPR004013 PHP domain GO:0003824 AMQ28_10610 e53d78c5f84fc5bef5766bd5552ee0bf 283 Gene3D G3DSA:3.20.20.140 4 256 6.6E-66 T 10-10-2018 AMQ28_10610 e53d78c5f84fc5bef5766bd5552ee0bf 283 Gene3D G3DSA:1.10.150.650 102 175 6.6E-66 T 10-10-2018 AMQ28_10610 e53d78c5f84fc5bef5766bd5552ee0bf 283 SUPERFAMILY SSF89550 4 268 8.76E-42 T 10-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMQ28_10610 e53d78c5f84fc5bef5766bd5552ee0bf 283 SMART SM00481 4 69 2.8E-16 T 10-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMQ28_00840 5e8be035550889628f65e9a4e004de4e 317 SUPERFAMILY SSF81345 3 312 8.37E-70 T 10-10-2018 IPR037294 ABC transporter, BtuC-like AMQ28_00840 5e8be035550889628f65e9a4e004de4e 317 Gene3D G3DSA:1.10.3470.10 2 316 6.2E-66 T 10-10-2018 IPR037294 ABC transporter, BtuC-like AMQ28_00840 5e8be035550889628f65e9a4e004de4e 317 Pfam PF01032 FecCD transport family 11 312 3.7E-67 T 10-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 Pfam PF13714 Phosphoenolpyruvate phosphomutase 12 254 6.3E-49 T 10-10-2018 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 SUPERFAMILY SSF51621 5 289 1.44E-98 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 10-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 5 291 45.891 T 10-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 8 291 5.9E-123 T 10-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AMQ28_14220 e0c901b61f686e2ecd1ae6d35797a725 291 Gene3D G3DSA:3.20.20.60 5 291 5.6E-98 T 10-10-2018 AMQ28_12545 4510d65b8c168076030a7fced05fbf90 143 Gene3D G3DSA:3.40.1350.10 14 137 2.2E-28 T 10-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMQ28_12545 4510d65b8c168076030a7fced05fbf90 143 Hamap MF_00048 UPF0102 protein YraN [yraN]. 8 119 20.078 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMQ28_12545 4510d65b8c168076030a7fced05fbf90 143 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 10 133 1.5E-27 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMQ28_12545 4510d65b8c168076030a7fced05fbf90 143 SUPERFAMILY SSF52980 11 106 1.06E-18 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_12545 4510d65b8c168076030a7fced05fbf90 143 Pfam PF02021 Uncharacterised protein family UPF0102 15 105 4.6E-24 T 10-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.7E-9 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 Gene3D G3DSA:3.40.50.720 1 267 6.0E-63 T 10-10-2018 AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 Pfam PF00106 short chain dehydrogenase 9 196 7.2E-49 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.9E-26 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.9E-26 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.9E-26 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.9E-26 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 8.9E-26 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 SUPERFAMILY SSF51735 4 263 1.04E-60 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_11920 4eb4ca0a31a9dfded5f93e92100dc640 267 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 192 9.1E-4 T 10-10-2018 AMQ28_04390 435cf241c2f27e26b6f931ac2bd6051a 510 Gene3D G3DSA:1.20.1250.20 272 503 7.1E-18 T 10-10-2018 AMQ28_04390 435cf241c2f27e26b6f931ac2bd6051a 510 Gene3D G3DSA:1.20.1720.10 21 220 6.7E-47 T 10-10-2018 AMQ28_04390 435cf241c2f27e26b6f931ac2bd6051a 510 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 495 1.5E-137 T 10-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMQ28_04390 435cf241c2f27e26b6f931ac2bd6051a 510 Pfam PF07690 Major Facilitator Superfamily 24 418 2.4E-52 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_04390 435cf241c2f27e26b6f931ac2bd6051a 510 SUPERFAMILY SSF103473 20 503 5.62E-67 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11835 59e2263c7348ff6729596ada7156206d 555 Gene3D G3DSA:3.40.720.10 225 553 4.8E-89 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMQ28_11835 59e2263c7348ff6729596ada7156206d 555 Pfam PF00884 Sulfatase 242 534 4.0E-53 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMQ28_11835 59e2263c7348ff6729596ada7156206d 555 SUPERFAMILY SSF53649 237 536 8.5E-21 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMQ28_11835 59e2263c7348ff6729596ada7156206d 555 Pfam PF08019 Domain of unknown function (DUF1705) 63 212 5.3E-42 T 10-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AMQ28_04965 714d2b118f17a8547cc873f76c2378dc 252 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 23 244 1.0E-41 T 10-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMQ28_04965 714d2b118f17a8547cc873f76c2378dc 252 Pfam PF03099 Biotin/lipoate A/B protein ligase family 47 141 1.8E-9 T 10-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMQ28_04965 714d2b118f17a8547cc873f76c2378dc 252 Gene3D G3DSA:3.30.930.10 22 202 5.3E-39 T 10-10-2018 AMQ28_04965 714d2b118f17a8547cc873f76c2378dc 252 SUPERFAMILY SSF55681 20 190 4.97E-36 T 10-10-2018 AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 SUPERFAMILY SSF52540 1 205 2.78E-42 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 206 25.115 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 176 3.7E-49 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 Gene3D G3DSA:3.40.50.300 1 206 2.9E-55 T 10-10-2018 AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 PIRSF PIRSF006755 2 206 2.1E-59 T 10-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMQ28_04840 749e8c474e3784ea478146a9930b07b3 213 Pfam PF13500 AAA domain 5 180 5.0E-34 T 10-10-2018 AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 SUPERFAMILY SSF52833 2 90 3.94E-20 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 Pfam PF14497 Glutathione S-transferase, C-terminal domain 126 200 8.1E-6 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 Gene3D G3DSA:3.40.30.10 3 85 1.2E-24 T 10-10-2018 AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 84 8.9E-13 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 Gene3D G3DSA:1.20.1050.10 89 216 7.5E-51 T 10-10-2018 AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 215 8.3E-88 T 10-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 AMQ28_13600 50cbffbe02e0b3f8195025ed8baa3966 216 SUPERFAMILY SSF47616 87 214 7.39E-33 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_11485 5600639747daa0a5f52ee607f6cee95e 90 SUPERFAMILY SSF55229 38 89 2.48E-11 T 10-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMQ28_11485 5600639747daa0a5f52ee607f6cee95e 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 15 88 7.5E-20 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMQ28_11485 5600639747daa0a5f52ee607f6cee95e 90 Gene3D G3DSA:3.30.1070.10 4 88 7.5E-20 T 10-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMQ28_11485 5600639747daa0a5f52ee607f6cee95e 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 4 90 15.271 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMQ28_11485 5600639747daa0a5f52ee607f6cee95e 90 Pfam PF03776 Septum formation topological specificity factor MinE 17 87 4.8E-19 T 10-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMQ28_03250 6c93321bf179b43d16a15c6d83385c34 156 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 150 27.986 T 10-10-2018 IPR003791 Protein of unknown function UPF0178 AMQ28_03250 6c93321bf179b43d16a15c6d83385c34 156 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 21 149 2.6E-45 T 10-10-2018 IPR003791 Protein of unknown function UPF0178 AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 Gene3D G3DSA:3.40.980.10 147 303 1.9E-42 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 148 285 2.6E-26 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 Pfam PF00994 Probable molybdopterin binding domain 152 291 1.1E-27 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 Gene3D G3DSA:3.30.70.640 1 146 1.1E-48 T 10-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 1 138 1.7E-42 T 10-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 SMART SM00852 151 293 2.7E-17 T 10-10-2018 IPR001453 MoaB/Mog domain AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 PIRSF PIRSF036594 1 305 3.1E-71 T 10-10-2018 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823 AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 SUPERFAMILY SSF55040 1 140 7.59E-45 T 10-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 SUPERFAMILY SSF53218 148 297 2.62E-34 T 10-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMQ28_03490 3cc7f9d7d0529c72bd109607b8f59e4f 307 Pfam PF01967 MoaC family 1 136 1.5E-42 T 10-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 Gene3D G3DSA:1.10.260.40 1 65 1.7E-12 T 10-10-2018 AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 SMART SM00530 6 61 3.7E-7 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 Gene3D G3DSA:2.10.109.10 99 226 2.7E-10 T 10-10-2018 AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 SUPERFAMILY SSF51306 90 221 2.62E-17 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 Pfam PF00717 Peptidase S24-like 138 204 1.4E-9 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 SUPERFAMILY SSF47413 1 65 1.18E-9 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_13070 6c16e0a52abfe73fb4a378bbaa1d8f83 228 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 10 63 1.4E-8 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 SUPERFAMILY SSF54534 282 382 4.84E-32 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Hamap MF_01183 Chaperone SurA [surA]. 13 426 25.954 T 10-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Gene3D G3DSA:1.10.4030.30 31 277 3.4E-47 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 SUPERFAMILY SSF109998 31 204 3.53E-30 T 10-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Pfam PF13616 PPIC-type PPIASE domain 278 381 5.1E-31 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Gene3D G3DSA:3.10.50.40 278 418 3.5E-42 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 SUPERFAMILY SSF54534 178 274 1.11E-11 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 319 340 - T 10-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Pfam PF00639 PPIC-type PPIASE domain 190 269 5.0E-6 T 10-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Gene3D G3DSA:3.10.50.40 179 273 3.4E-47 T 10-10-2018 AMQ28_01775 a2403a4d4b49f0cc8196fc779c4faf83 434 Pfam PF09312 SurA N-terminal domain 31 149 7.2E-23 T 10-10-2018 IPR015391 SurA N-terminal AMQ28_07410 8f5aec12ee695743516341c97f317921 92 SUPERFAMILY SSF47413 37 88 3.66E-10 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_07410 8f5aec12ee695743516341c97f317921 92 SMART SM00530 35 90 8.6E-6 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_07410 8f5aec12ee695743516341c97f317921 92 Gene3D G3DSA:1.10.260.40 35 92 4.4E-9 T 10-10-2018 AMQ28_07410 8f5aec12ee695743516341c97f317921 92 Pfam PF01381 Helix-turn-helix 39 88 1.5E-9 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 PIRSF PIRSF038945 1 376 3.4E-150 T 10-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 57 70 - T 10-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 343 6.9E-64 T 10-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 Gene3D G3DSA:3.40.50.1100 17 350 4.2E-115 T 10-10-2018 AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 TIGRFAM TIGR00260 thrC: threonine synthase 11 350 3.6E-91 T 10-10-2018 IPR004450 Threonine synthase-like AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 Gene3D G3DSA:3.40.50.1100 65 161 4.2E-115 T 10-10-2018 AMQ28_06780 696d789f253601a17c59f7bf4ee41384 381 SUPERFAMILY SSF53686 11 377 7.6E-102 T 10-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 SUPERFAMILY SSF56349 98 387 1.41E-37 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 Gene3D G3DSA:3.30.160.390 1 90 3.5E-19 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 Gene3D G3DSA:1.10.150.130 95 204 1.1E-15 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 Pfam PF00589 Phage integrase family 207 370 2.9E-10 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 Pfam PF13356 Arm DNA-binding domain 3 88 1.8E-15 T 10-10-2018 IPR025166 Integrase, DNA-binding domain AMQ28_05440 a6b90088c96ea2e378c94cc8db8cfb53 400 Gene3D G3DSA:1.10.443.10 206 394 1.3E-11 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_05230 088a6d528c50e2b07ad44478e5a24289 898 Pfam PF10101 Predicted membrane protein (DUF2339) 161 892 2.4E-76 T 10-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Pfam PF00330 Aconitase family (aconitate hydratase) 68 538 2.2E-145 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 407 418 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 267 280 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 138 151 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 191 204 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 205 220 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 281 294 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 162 170 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 469 482 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 PRINTS PR00415 Aconitase family signature 360 374 2.2E-27 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 868 0.0 T 10-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Pfam PF00694 Aconitase C-terminal domain 661 793 8.2E-32 T 10-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Gene3D G3DSA:1.10.1440.20 567 622 9.9E-7 T 10-10-2018 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Gene3D G3DSA:3.20.19.10 623 867 3.5E-83 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Gene3D G3DSA:3.30.499.10 361 566 1.3E-77 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 SUPERFAMILY SSF52016 603 866 6.28E-68 T 10-10-2018 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 SUPERFAMILY SSF53732 17 592 4.45E-185 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMQ28_11350 b0c363bbb529517e842f2cefbd05141b 872 Gene3D G3DSA:3.30.499.20 4 360 3.7E-129 T 10-10-2018 AMQ28_00325 063b7e285db389642b1c7eff90274589 251 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 7 238 2.5E-37 T 10-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMQ28_00325 063b7e285db389642b1c7eff90274589 251 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 251 42.153 T 10-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMQ28_00325 063b7e285db389642b1c7eff90274589 251 Pfam PF02654 Cobalamin-5-phosphate synthase 7 237 2.9E-51 T 10-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMQ28_06535 7b64cd0f361cd1c1f996e510a04b9cfc 501 Pfam PF13361 UvrD-like helicase C-terminal domain 425 477 5.9E-11 T 10-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMQ28_06535 7b64cd0f361cd1c1f996e510a04b9cfc 501 SUPERFAMILY SSF52540 10 482 7.49E-49 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06535 7b64cd0f361cd1c1f996e510a04b9cfc 501 Pfam PF13245 AAA domain 13 252 2.9E-13 T 10-10-2018 AMQ28_06535 7b64cd0f361cd1c1f996e510a04b9cfc 501 Gene3D G3DSA:3.40.50.300 396 493 9.4E-13 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 6.0E-37 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 SUPERFAMILY SSF55021 2 76 3.21E-22 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 SUPERFAMILY SSF55021 79 161 1.71E-26 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 Pfam PF13710 ACT domain 13 73 1.8E-17 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 2.7E-63 T 10-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 Gene3D G3DSA:3.30.70.260 1 78 5.2E-34 T 10-10-2018 AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 Gene3D G3DSA:3.30.70.1150 83 163 2.0E-29 T 10-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AMQ28_05830 e7e7377c9b5d203791125985c3733cb0 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.7E-27 T 10-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 Pfam PF00582 Universal stress protein family 3 146 5.5E-33 T 10-10-2018 IPR006016 UspA AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 PRINTS PR01438 Universal stress protein signature 3 21 2.7E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 PRINTS PR01438 Universal stress protein signature 106 118 2.7E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 PRINTS PR01438 Universal stress protein signature 124 146 2.7E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 Gene3D G3DSA:3.40.50.620 1 146 3.2E-37 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 PIRSF PIRSF006276 1 147 6.0E-20 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_01555 e9b033ab11b38a6d2ef25410577b9062 147 SUPERFAMILY SSF52402 1 146 6.78E-39 T 10-10-2018 AMQ28_14130 17052359d1c52c29211add4c24fbf0dd 108 SUPERFAMILY SSF50022 3 105 4.84E-23 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_14130 17052359d1c52c29211add4c24fbf0dd 108 Pfam PF00355 Rieske [2Fe-2S] domain 3 88 1.1E-13 T 10-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMQ28_14130 17052359d1c52c29211add4c24fbf0dd 108 Gene3D G3DSA:2.102.10.10 2 108 7.9E-17 T 10-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMQ28_00690 235f2f211cf5deb21e6aa3898871300d 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 259 8.3E-52 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_00690 235f2f211cf5deb21e6aa3898871300d 264 Gene3D G3DSA:1.10.12.10 204 264 1.5E-19 T 10-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMQ28_00690 235f2f211cf5deb21e6aa3898871300d 264 Gene3D G3DSA:3.90.226.10 1 201 2.8E-63 T 10-10-2018 AMQ28_00690 235f2f211cf5deb21e6aa3898871300d 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMQ28_00690 235f2f211cf5deb21e6aa3898871300d 264 SUPERFAMILY SSF52096 1 259 6.15E-73 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_13995 b6789ecc1575e712022cd3e40325ab13 396 Gene3D G3DSA:1.10.10.10 307 391 4.7E-11 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13995 b6789ecc1575e712022cd3e40325ab13 396 SMART SM00421 328 385 8.0E-9 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_13995 b6789ecc1575e712022cd3e40325ab13 396 SUPERFAMILY SSF46894 325 387 5.1E-12 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_13995 b6789ecc1575e712022cd3e40325ab13 396 Pfam PF00196 Bacterial regulatory proteins, luxR family 331 384 1.5E-8 T 10-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMQ28_07230 6b1da1947282df800a2ab3b16c546516 420 Pfam PF00990 Diguanylate cyclase, GGDEF domain 256 413 6.6E-43 T 10-10-2018 IPR000160 GGDEF domain AMQ28_07230 6b1da1947282df800a2ab3b16c546516 420 Gene3D G3DSA:3.30.70.270 248 419 2.4E-55 T 10-10-2018 AMQ28_07230 6b1da1947282df800a2ab3b16c546516 420 SUPERFAMILY SSF55073 261 418 1.1E-45 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_07230 6b1da1947282df800a2ab3b16c546516 420 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 253 416 1.0E-52 T 10-10-2018 IPR000160 GGDEF domain AMQ28_07230 6b1da1947282df800a2ab3b16c546516 420 SMART SM00267 245 417 6.5E-55 T 10-10-2018 IPR000160 GGDEF domain AMQ28_01800 082665e8a0242b647325159af8cd8ca1 301 Gene3D G3DSA:3.30.2350.10 84 297 2.4E-40 T 10-10-2018 AMQ28_01800 082665e8a0242b647325159af8cd8ca1 301 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_01800 082665e8a0242b647325159af8cd8ca1 301 SUPERFAMILY SSF55120 85 295 1.12E-45 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_01800 082665e8a0242b647325159af8cd8ca1 301 Pfam PF00849 RNA pseudouridylate synthase 100 247 1.6E-22 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 452 7.5E-103 T 10-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 SUPERFAMILY SSF116878 122 452 1.96E-48 T 10-10-2018 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 452 32.147 T 10-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Gene3D G3DSA:1.20.120.430 123 452 5.1E-101 T 10-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 219 371 4.5E-22 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Pfam PF12631 MnmE helical domain 124 449 7.9E-55 T 10-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Gene3D G3DSA:3.40.50.300 218 380 5.1E-101 T 10-10-2018 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Gene3D G3DSA:3.30.1360.120 1 122 3.5E-39 T 10-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 SUPERFAMILY SSF52540 73 371 3.35E-43 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 121 4.3E-35 T 10-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 220 240 1.5E-5 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 287 305 1.5E-5 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_08120 42227e6d411bf9e4990f2167e9c7b3bf 452 Pfam PF01926 50S ribosome-binding GTPase 219 335 2.3E-24 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 SUPERFAMILY SSF53067 153 339 6.99E-50 T 10-10-2018 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 Gene3D G3DSA:3.30.420.40 14 332 5.5E-128 T 10-10-2018 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 Gene3D G3DSA:3.30.420.40 157 322 5.5E-128 T 10-10-2018 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 3.2E-60 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 3.2E-60 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 3.2E-60 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 3.2E-60 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 3.2E-60 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 339 6.6E-149 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 Pfam PF06723 MreB/Mbl protein 13 339 3.0E-141 T 10-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 SUPERFAMILY SSF53067 10 151 1.16E-36 T 10-10-2018 AMQ28_11700 c5b446f125186f4ebb437f4c7fec79fd 348 Gene3D G3DSA:3.90.640.10 189 264 5.5E-128 T 10-10-2018 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 Pfam PF00175 Oxidoreductase NAD-binding domain 116 229 1.1E-13 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 140 149 1.5E-7 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 53 60 1.5E-7 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.5E-7 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 1.5E-7 T 10-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 Gene3D G3DSA:3.40.50.80 99 253 1.2E-39 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 Gene3D G3DSA:2.40.30.10 1 97 8.1E-29 T 10-10-2018 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 140 149 4.2E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 4.2E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 4.2E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 4.2E-7 T 10-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 SUPERFAMILY SSF63380 8 101 2.51E-24 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 SUPERFAMILY SSF52343 108 251 9.56E-33 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_04480 1fcc7fce3375606e6e337bc68d8f37e3 253 Pfam PF00970 Oxidoreductase FAD-binding domain 19 94 9.8E-9 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMQ28_08495 c62c12cbb593ab30ac26a3b4a151b7f8 525 Pfam PF04262 Glutamate-cysteine ligase 18 387 1.5E-146 T 10-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMQ28_08495 c62c12cbb593ab30ac26a3b4a151b7f8 525 Gene3D G3DSA:3.30.590.20 20 525 1.7E-175 T 10-10-2018 AMQ28_08495 c62c12cbb593ab30ac26a3b4a151b7f8 525 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 525 181.94 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMQ28_08495 c62c12cbb593ab30ac26a3b4a151b7f8 525 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 18 523 8.2E-159 T 10-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMQ28_08495 c62c12cbb593ab30ac26a3b4a151b7f8 525 SUPERFAMILY SSF55931 9 521 7.19E-175 T 10-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMQ28_01375 d87cfe435107d2384018315f7ba14b84 256 Pfam PF14237 Domain of unknown function (DUF4339) 4 46 7.6E-17 T 10-10-2018 IPR025640 Domain of unknown function DUF4339 Reactome: R-HSA-6798695 AMQ28_01375 d87cfe435107d2384018315f7ba14b84 256 Pfam PF06271 RDD family 93 249 7.8E-22 T 10-10-2018 IPR010432 RDD AMQ28_03945 5c317b31a55fa180435151bb289c9713 261 SUPERFAMILY SSF52096 8 260 2.39E-55 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_03945 5c317b31a55fa180435151bb289c9713 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 261 1.8E-35 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_03945 5c317b31a55fa180435151bb289c9713 261 Gene3D G3DSA:3.90.226.10 4 203 8.6E-51 T 10-10-2018 AMQ28_03945 5c317b31a55fa180435151bb289c9713 261 Gene3D G3DSA:1.10.12.10 204 261 4.8E-17 T 10-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 3.0E-13 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 SUPERFAMILY SSF46785 4 75 2.55E-17 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 SMART SM00345 13 71 9.9E-12 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 Gene3D G3DSA:1.10.10.10 1 72 1.0E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 Pfam PF07729 FCD domain 82 202 1.1E-9 T 10-10-2018 IPR011711 GntR, C-terminal AMQ28_04955 14cd5bf2a7627df5ca48391438eb22a4 231 Gene3D G3DSA:1.20.120.530 74 214 3.2E-9 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMQ28_01115 1c1b6e79a53e8836da9798fdcc97e22b 181 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 8.9E-10 T 10-10-2018 IPR005149 Transcription regulator PadR, N-terminal AMQ28_01115 1c1b6e79a53e8836da9798fdcc97e22b 181 Pfam PF10400 Virulence activator alpha C-term 91 174 2.5E-18 T 10-10-2018 IPR018309 Transcription regulator PadR, C-terminal AMQ28_01115 1c1b6e79a53e8836da9798fdcc97e22b 181 Gene3D G3DSA:1.10.10.10 1 86 1.5E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_01115 1c1b6e79a53e8836da9798fdcc97e22b 181 SUPERFAMILY SSF46785 3 175 4.84E-33 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01445 4bd98adec7a5db5a7ba6d473d6b3fa68 517 Gene3D G3DSA:3.40.50.11290 251 349 3.3E-36 T 10-10-2018 AMQ28_01445 4bd98adec7a5db5a7ba6d473d6b3fa68 517 Pfam PF14403 Circularly permuted ATP-grasp type 2 116 490 1.4E-145 T 10-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMQ28_01445 4bd98adec7a5db5a7ba6d473d6b3fa68 517 SUPERFAMILY SSF56059 60 505 1.59E-54 T 10-10-2018 AMQ28_01445 4bd98adec7a5db5a7ba6d473d6b3fa68 517 PIRSF PIRSF005522 36 517 1.1E-211 T 10-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 AMQ28_01445 4bd98adec7a5db5a7ba6d473d6b3fa68 517 Gene3D G3DSA:3.30.1490.270 386 446 1.4E-23 T 10-10-2018 AMQ28_10415 369e56beabe1b7663a1a1cccff9cbdc0 198 Pfam PF03358 NADPH-dependent FMN reductase 12 140 8.4E-8 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMQ28_10415 369e56beabe1b7663a1a1cccff9cbdc0 198 Gene3D G3DSA:3.40.50.360 1 197 6.1E-61 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_10415 369e56beabe1b7663a1a1cccff9cbdc0 198 SUPERFAMILY SSF52218 4 196 1.7E-58 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_10415 369e56beabe1b7663a1a1cccff9cbdc0 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 195 3.8E-43 T 10-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AMQ28_10415 369e56beabe1b7663a1a1cccff9cbdc0 198 ProSitePatterns PS00201 Flavodoxin signature. 7 23 - T 10-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMQ28_07600 4302e22353532ef678e8db8c3ed93afc 305 Pfam PF00665 Integrase core domain 133 247 3.5E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_07600 4302e22353532ef678e8db8c3ed93afc 305 Pfam PF13276 HTH-like domain 57 108 1.1E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_07600 4302e22353532ef678e8db8c3ed93afc 305 Gene3D G3DSA:3.30.420.10 127 278 4.0E-15 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_07600 4302e22353532ef678e8db8c3ed93afc 305 SUPERFAMILY SSF53098 127 292 4.4E-38 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 SUPERFAMILY SSF56801 10 539 5.76E-147 T 10-10-2018 AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 10-10-2018 IPR020845 AMP-binding, conserved site AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 Gene3D G3DSA:3.30.300.310 440 543 1.9E-34 T 10-10-2018 AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 Gene3D G3DSA:3.40.50.12780 8 439 8.6E-110 T 10-10-2018 AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 527 8.3E-20 T 10-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMQ28_05685 6149e3c45c85726ca687ad1c4a369386 546 Pfam PF00501 AMP-binding enzyme 25 444 1.8E-99 T 10-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMQ28_05460 347847028c786544b60bc79bbc12c13c 340 SUPERFAMILY SSF51445 3 306 2.11E-77 T 10-10-2018 IPR017853 Glycoside hydrolase superfamily AMQ28_05460 347847028c786544b60bc79bbc12c13c 340 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 298 9.9E-72 T 10-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMQ28_05460 347847028c786544b60bc79bbc12c13c 340 Gene3D G3DSA:3.20.20.300 1 337 5.8E-111 T 10-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMQ28_05460 347847028c786544b60bc79bbc12c13c 340 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 10-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMQ28_05460 347847028c786544b60bc79bbc12c13c 340 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 337 47.457 T 10-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Pfam PF00694 Aconitase C-terminal domain 716 842 5.1E-49 T 10-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 SUPERFAMILY SSF53732 7 651 5.62E-223 T 10-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 ProSitePatterns PS01244 Aconitase family signature 2. 518 531 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Gene3D G3DSA:1.10.1440.20 616 675 3.6E-19 T 10-10-2018 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Gene3D G3DSA:3.30.499.10 376 615 2.6E-96 T 10-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 SUPERFAMILY SSF52016 654 916 8.04E-89 T 10-10-2018 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 23 916 0.0 T 10-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Gene3D G3DSA:3.30.499.20 8 375 1.5E-160 T 10-10-2018 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Gene3D G3DSA:3.20.19.10 677 917 7.6E-109 T 10-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 Pfam PF00330 Aconitase family (aconitate hydratase) 74 587 4.6E-181 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 ProSitePatterns PS00450 Aconitase family signature 1. 452 468 - T 10-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 375 389 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 149 162 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 518 531 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 456 467 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 296 309 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 206 219 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 220 235 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 282 295 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_00990 6d96f5e16ceabab217e9999a5c695261 918 PRINTS PR00415 Aconitase family signature 173 181 7.1E-42 T 10-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMQ28_11050 e72476efbbe095c4a88bf4980313c2b7 238 Gene3D G3DSA:3.20.20.190 1 238 3.0E-53 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMQ28_11050 e72476efbbe095c4a88bf4980313c2b7 238 SUPERFAMILY SSF51695 1 234 9.42E-50 T 10-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMQ28_11050 e72476efbbe095c4a88bf4980313c2b7 238 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 230 1.6E-32 T 10-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMQ28_05715 efb70fc0e215b4fde26e275d89795e6d 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 128 1.1E-40 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_05715 efb70fc0e215b4fde26e275d89795e6d 161 Gene3D G3DSA:3.30.70.560 1 152 1.2E-48 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_05715 efb70fc0e215b4fde26e275d89795e6d 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 128 6.0E-35 T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_05715 efb70fc0e215b4fde26e275d89795e6d 161 SUPERFAMILY SSF55083 1 138 3.92E-46 T 10-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_05715 efb70fc0e215b4fde26e275d89795e6d 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 10-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 Gene3D G3DSA:3.40.50.720 127 272 5.5E-109 T 10-10-2018 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 SMART SM00829 13 326 1.8E-27 T 10-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 SUPERFAMILY SSF50129 4 148 9.89E-35 T 10-10-2018 IPR011032 GroES-like superfamily AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 90 1.1E-8 T 10-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 10-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 Pfam PF00107 Zinc-binding dehydrogenase 155 260 1.7E-30 T 10-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 SUPERFAMILY SSF51735 115 268 4.27E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_00920 b711dd9f0f176dfb45a0933520279aa3 328 Gene3D G3DSA:3.90.180.10 15 322 5.5E-109 T 10-10-2018 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 Gene3D G3DSA:1.10.860.10 23 188 6.8E-43 T 10-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 31 470 3.5E-163 T 10-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 Gene3D G3DSA:3.40.50.300 189 475 1.5E-99 T 10-10-2018 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 2.2E-28 T 10-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 Pfam PF03796 DnaB-like helicase C terminal domain 212 468 6.1E-107 T 10-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 SUPERFAMILY SSF48024 29 141 3.27E-29 T 10-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AMQ28_01420 e23256aed1447eddf78ff71d450f1370 481 SUPERFAMILY SSF52540 210 461 1.16E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08025 d5d6d55d3ca780081b200df1c5ff9557 877 Pfam PF13009 Putative phage integrase 27 375 1.7E-117 T 10-10-2018 IPR024965 Putative phage integrase AMQ28_12130 431135f21e87825d65c234f961ecec99 332 Pfam PF13525 Outer membrane lipoprotein 40 241 1.5E-59 T 10-10-2018 IPR039565 Outer membrane lipoprotein BamD-like AMQ28_12130 431135f21e87825d65c234f961ecec99 332 Gene3D G3DSA:1.25.40.10 39 260 2.1E-53 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12130 431135f21e87825d65c234f961ecec99 332 SUPERFAMILY SSF48452 43 123 1.07E-9 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12130 431135f21e87825d65c234f961ecec99 332 SUPERFAMILY SSF48452 87 250 5.82E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_12130 431135f21e87825d65c234f961ecec99 332 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 9 253 5.7E-78 T 10-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMQ28_12130 431135f21e87825d65c234f961ecec99 332 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 251 35.614 T 10-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMQ28_04595 8a012d7d52f07fafa0b1e6962d514e8b 427 Pfam PF00268 Ribonucleotide reductase, small chain 108 395 9.3E-87 T 10-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04595 8a012d7d52f07fafa0b1e6962d514e8b 427 SUPERFAMILY SSF47240 73 401 1.31E-97 T 10-10-2018 IPR009078 Ferritin-like superfamily AMQ28_04595 8a012d7d52f07fafa0b1e6962d514e8b 427 PIRSF PIRSF000355 78 427 5.3E-141 T 10-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMQ28_04595 8a012d7d52f07fafa0b1e6962d514e8b 427 Gene3D G3DSA:1.10.620.20 85 421 1.0E-110 T 10-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMQ28_00335 55127ecf1a8e1e8f5a59439ed84c7a2c 94 SUPERFAMILY SSF75169 6 91 6.47E-7 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_00335 55127ecf1a8e1e8f5a59439ed84c7a2c 94 Gene3D G3DSA:3.40.1260.10 5 92 7.4E-7 T 10-10-2018 IPR027396 DsrEFH-like AMQ28_00335 55127ecf1a8e1e8f5a59439ed84c7a2c 94 Pfam PF04077 DsrH like protein 18 88 1.3E-5 T 10-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 Gene3D G3DSA:3.90.1030.10 1 117 1.1E-45 T 10-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 SUPERFAMILY SSF64263 1 119 2.75E-49 T 10-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 5.4E-45 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.129 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 Pfam PF01196 Ribosomal protein L17 20 116 2.3E-33 T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10315 68dc9d76576fb432b3cf4b4a58e407a2 121 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 10-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 310 2.3E-128 T 10-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Gene3D G3DSA:3.30.1490.20 136 200 1.7E-108 T 10-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Gene3D G3DSA:3.30.470.20 114 294 1.7E-108 T 10-10-2018 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 SUPERFAMILY SSF56059 122 309 9.23E-57 T 10-10-2018 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 296 3.0E-76 T 10-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 119 8.9E-40 T 10-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 SUPERFAMILY SSF52440 1 121 1.12E-40 T 10-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 159.201 T 10-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMQ28_08605 56fbef3c46bea0ef73704995ab72d20f 314 Gene3D G3DSA:3.40.50.20 6 113 1.7E-108 T 10-10-2018 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 6.4E-154 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 1.7E-163 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 Gene3D G3DSA:1.20.58.180 217 298 2.8E-34 T 10-10-2018 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 SUPERFAMILY SSF55681 10 291 1.43E-137 T 10-10-2018 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.372 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.3E-69 T 10-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06285 924f53b83fa2494d645a7eadad4880ab 327 Gene3D G3DSA:3.30.930.10 3 216 4.0E-113 T 10-10-2018 AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 Gene3D G3DSA:3.30.450.40 90 271 8.4E-45 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 Pfam PF09339 IclR helix-turn-helix domain 26 75 3.8E-13 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 SMART SM00346 23 111 1.1E-29 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 SUPERFAMILY SSF55781 92 269 1.01E-35 T 10-10-2018 AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 20 270 1.5E-92 T 10-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 SUPERFAMILY SSF46785 25 94 5.9E-11 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 Gene3D G3DSA:1.10.10.10 12 82 6.7E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00885 5c919758e72f0b21e933d117d8a64310 271 Pfam PF01614 Bacterial transcriptional regulator 145 268 1.5E-35 T 10-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMQ28_09975 0233cf7b0a42ff23a2ff4f526ef3a828 214 Gene3D G3DSA:3.40.50.300 1 208 1.6E-42 T 10-10-2018 AMQ28_09975 0233cf7b0a42ff23a2ff4f526ef3a828 214 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 156 1.9E-17 T 10-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMQ28_09975 0233cf7b0a42ff23a2ff4f526ef3a828 214 SUPERFAMILY SSF52540 1 194 6.27E-34 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09975 0233cf7b0a42ff23a2ff4f526ef3a828 214 PIRSF PIRSF009320 1 208 1.9E-31 T 10-10-2018 AMQ28_07880 489c97101e26080a2e8895852b46aef9 433 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 27 424 3.5E-105 T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMQ28_07880 489c97101e26080a2e8895852b46aef9 433 Pfam PF00860 Permease family 30 402 2.0E-91 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMQ28_07635 6aefb461be838c305fd61dbd3f1df557 79 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 9 72 3.7E-25 T 10-10-2018 IPR018684 Protein of unknown function DUF2171 AMQ28_07100 2bccad4db35c4a1a1a82a274fb0bcef3 148 Gene3D G3DSA:3.40.50.300 1 144 1.6E-32 T 10-10-2018 AMQ28_07100 2bccad4db35c4a1a1a82a274fb0bcef3 148 PIRSF PIRSF037081 33 146 8.8E-13 T 10-10-2018 IPR017101 P-loop ATP/GTP binding protein, All4644, predicted AMQ28_07100 2bccad4db35c4a1a1a82a274fb0bcef3 148 PIRSF PIRSF037081 1 23 25.0 T 10-10-2018 IPR017101 P-loop ATP/GTP binding protein, All4644, predicted AMQ28_07100 2bccad4db35c4a1a1a82a274fb0bcef3 148 Pfam PF13671 AAA domain 42 103 1.6E-7 T 10-10-2018 AMQ28_07100 2bccad4db35c4a1a1a82a274fb0bcef3 148 SUPERFAMILY SSF52540 2 132 3.41E-15 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 SUPERFAMILY SSF53720 6 480 5.11E-172 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 31 477 6.4E-210 T 10-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 10-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 Gene3D G3DSA:3.40.309.10 262 451 2.2E-186 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 Gene3D G3DSA:3.40.605.10 25 474 2.2E-186 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_12770 90c54d9c8e175c1aad3f6c34ce0a137a 483 Pfam PF00171 Aldehyde dehydrogenase family 20 477 2.5E-175 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_06460 a1ce0e9c07c5d68163327d69ab1d3d75 411 Pfam PF01544 CorA-like Mg2+ transporter protein 29 358 1.5E-43 T 10-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMQ28_06460 a1ce0e9c07c5d68163327d69ab1d3d75 411 Gene3D G3DSA:1.20.58.340 285 361 1.6E-25 T 10-10-2018 AMQ28_06460 a1ce0e9c07c5d68163327d69ab1d3d75 411 SUPERFAMILY SSF143865 26 295 2.09E-16 T 10-10-2018 AMQ28_06460 a1ce0e9c07c5d68163327d69ab1d3d75 411 SUPERFAMILY SSF144083 297 359 1.96E-19 T 10-10-2018 AMQ28_06460 a1ce0e9c07c5d68163327d69ab1d3d75 411 Gene3D G3DSA:3.30.460.20 10 148 1.8E-5 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 SUPERFAMILY SSF55021 333 409 1.27E-19 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 10-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 SUPERFAMILY SSF52283 9 137 7.87E-48 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 201 223 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 SUPERFAMILY SSF51735 109 296 1.93E-55 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 295 3.4E-50 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 Gene3D G3DSA:3.40.50.720 15 313 6.9E-104 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 Gene3D G3DSA:3.40.50.720 110 298 6.9E-104 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 Gene3D G3DSA:3.30.70.260 329 409 5.2E-31 T 10-10-2018 AMQ28_09940 93ffc13d9890d261e6200126fce87573 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 327 5.9E-33 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMQ28_04370 812651539c5d9f11f84dcf44a0f66ab6 402 Pfam PF00872 Transposase, Mutator family 18 377 5.5E-115 T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_04370 812651539c5d9f11f84dcf44a0f66ab6 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_00935 812651539c5d9f11f84dcf44a0f66ab6 402 Pfam PF00872 Transposase, Mutator family 18 377 5.5E-115 T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_00935 812651539c5d9f11f84dcf44a0f66ab6 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_08880 812651539c5d9f11f84dcf44a0f66ab6 402 Pfam PF00872 Transposase, Mutator family 18 377 5.5E-115 T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_08880 812651539c5d9f11f84dcf44a0f66ab6 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_06160 812651539c5d9f11f84dcf44a0f66ab6 402 Pfam PF00872 Transposase, Mutator family 18 377 5.5E-115 T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_06160 812651539c5d9f11f84dcf44a0f66ab6 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 10-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 257 4.0E-94 T 10-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 2.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.8E-7 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 SUPERFAMILY SSF53474 1 257 2.9E-68 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 Gene3D G3DSA:3.40.50.1820 2 258 4.1E-71 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00575 5a9c9d997946ec16b18bcf845203b043 258 Pfam PF00561 alpha/beta hydrolase fold 22 244 2.8E-23 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 PIRSF PIRSF006232 2 291 1.8E-83 T 10-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 Pfam PF05726 Pirin C-terminal cupin domain 183 285 1.5E-26 T 10-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 SUPERFAMILY SSF51182 2 288 2.04E-78 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 Pfam PF02678 Pirin 22 127 9.4E-30 T 10-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 Gene3D G3DSA:2.60.120.10 17 280 7.3E-80 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_09045 979c427dff3e396ddf7d79c6d646a891 291 Gene3D G3DSA:2.60.120.10 149 254 7.3E-80 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_01940 89fefce48429e847297374aa794cd9ca 234 Gene3D G3DSA:3.40.50.360 1 234 1.0E-77 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_01940 89fefce48429e847297374aa794cd9ca 234 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 3 220 1.8E-116 T 10-10-2018 IPR014063 Arsenate resistance ArsH AMQ28_01940 89fefce48429e847297374aa794cd9ca 234 SUPERFAMILY SSF52218 4 220 1.07E-62 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_01940 89fefce48429e847297374aa794cd9ca 234 Pfam PF03358 NADPH-dependent FMN reductase 28 170 2.8E-25 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMQ28_07590 78d75ae50960f839f25741f1b87386c8 219 Gene3D G3DSA:1.20.1250.20 34 217 6.8E-17 T 10-10-2018 AMQ28_07590 78d75ae50960f839f25741f1b87386c8 219 SUPERFAMILY SSF103473 5 211 4.45E-22 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 SUPERFAMILY SSF56104 2 232 1.24E-79 T 10-10-2018 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 Gene3D G3DSA:3.30.470.20 85 220 1.0E-92 T 10-10-2018 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 10-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 10-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 234 1.6E-78 T 10-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 Pfam PF01259 SAICAR synthetase 7 231 8.6E-65 T 10-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 Gene3D G3DSA:3.30.200.20 7 231 1.0E-92 T 10-10-2018 AMQ28_08395 b42399419f6e24b144761aa2b7bfff39 239 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.339 T 10-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMQ28_02045 f8e19a431545cdabbb10a7a01b0b1833 236 SUPERFAMILY SSF47336 170 233 9.42E-10 T 10-10-2018 IPR036736 ACP-like superfamily AMQ28_02045 f8e19a431545cdabbb10a7a01b0b1833 236 Gene3D G3DSA:1.10.1200.10 159 235 5.6E-12 T 10-10-2018 IPR036736 ACP-like superfamily AMQ28_02045 f8e19a431545cdabbb10a7a01b0b1833 236 Pfam PF00550 Phosphopantetheine attachment site 170 230 8.9E-8 T 10-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMQ28_09355 f42cc33c76b6bd03eae195f843dfd897 242 Gene3D G3DSA:2.60.200.20 2 103 1.3E-22 T 10-10-2018 AMQ28_09355 f42cc33c76b6bd03eae195f843dfd897 242 Pfam PF00498 FHA domain 24 86 2.9E-18 T 10-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMQ28_09355 f42cc33c76b6bd03eae195f843dfd897 242 SMART SM00240 22 72 4.1E-10 T 10-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMQ28_09355 f42cc33c76b6bd03eae195f843dfd897 242 SUPERFAMILY SSF49879 3 107 2.49E-22 T 10-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 3.7E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 3.7E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 3.7E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 3.7E-26 T 10-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 1.5E-241 T 10-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Gene3D G3DSA:3.30.930.10 120 582 1.7E-197 T 10-10-2018 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Pfam PF02938 GAD domain 311 409 5.3E-29 T 10-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Pfam PF01336 OB-fold nucleic acid binding domain 19 103 2.2E-17 T 10-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.382 T 10-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 SUPERFAMILY SSF55681 113 586 7.57E-103 T 10-10-2018 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Gene3D G3DSA:3.30.1360.30 275 423 1.7E-197 T 10-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Gene3D G3DSA:2.40.50.140 1 107 5.1E-33 T 10-10-2018 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 SUPERFAMILY SSF55261 293 422 5.56E-43 T 10-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 SUPERFAMILY SSF50249 2 106 2.1E-32 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_10975 3746eb3560654fcd0d53e9085f8b2a25 594 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.4E-109 T 10-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_05810 1979ac842604a6f13e7b0a8e1fe41d2a 234 SUPERFAMILY SSF49354 20 143 6.28E-11 T 10-10-2018 IPR008962 PapD-like superfamily AMQ28_05810 1979ac842604a6f13e7b0a8e1fe41d2a 234 Gene3D G3DSA:2.60.40.10 29 144 7.2E-6 T 10-10-2018 IPR013783 Immunoglobulin-like fold AMQ28_05810 1979ac842604a6f13e7b0a8e1fe41d2a 234 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 143 1.2E-8 T 10-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Gene3D G3DSA:3.40.50.300 122 289 5.3E-45 T 10-10-2018 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Pfam PF00308 Bacterial dnaA protein 123 341 8.8E-84 T 10-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 458 29.312 T 10-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 SMART SM00382 156 286 9.2E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Gene3D G3DSA:1.10.1750.10 366 459 1.2E-30 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 ProSitePatterns PS01008 DnaA protein signature. 417 436 - T 10-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 SUPERFAMILY SSF52540 125 336 9.71E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Pfam PF11638 DnaA N-terminal domain 2 60 1.9E-13 T 10-10-2018 IPR024633 DnaA N-terminal domain AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Gene3D G3DSA:1.10.8.60 290 360 6.1E-21 T 10-10-2018 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 369 436 6.8E-28 T 10-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 417 436 1.4E-48 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 157 177 1.4E-48 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 189 203 1.4E-48 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 221 235 1.4E-48 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 255 282 1.4E-48 T 10-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 Gene3D G3DSA:3.30.300.180 1 109 1.5E-19 T 10-10-2018 IPR038454 DnaA, N-terminal domain superfamily AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 SMART SM00760 367 436 2.5E-38 T 10-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 3 456 1.0E-152 T 10-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMQ28_08095 7e071ee2454fa8af863561796cc5c612 459 SUPERFAMILY SSF48295 356 458 5.49E-32 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_00860 cd8ec3eb584d2f8c6c230af67307fdb3 566 Gene3D G3DSA:3.30.1120.10 465 544 3.6E-17 T 10-10-2018 AMQ28_00860 cd8ec3eb584d2f8c6c230af67307fdb3 566 ProSitePatterns PS00149 Sulfatases signature 2. 126 136 - T 10-10-2018 IPR024607 Sulfatase, conserved site AMQ28_00860 cd8ec3eb584d2f8c6c230af67307fdb3 566 SUPERFAMILY SSF53649 24 536 3.34E-138 T 10-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMQ28_00860 cd8ec3eb584d2f8c6c230af67307fdb3 566 Gene3D G3DSA:3.40.720.10 23 464 8.6E-141 T 10-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMQ28_00860 cd8ec3eb584d2f8c6c230af67307fdb3 566 Pfam PF00884 Sulfatase 26 434 4.1E-81 T 10-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 SUPERFAMILY SSF55681 91 325 1.34E-79 T 10-10-2018 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 325 3.1E-108 T 10-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 86 1.9E-19 T 10-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 Pfam PF01409 tRNA synthetases class II core domain (F) 91 325 2.6E-103 T 10-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 SUPERFAMILY SSF46589 11 98 5.75E-19 T 10-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 Gene3D G3DSA:3.30.930.10 6 326 1.2E-119 T 10-10-2018 AMQ28_05290 1219a4f6d95fb87801e85c94f89d22ab 326 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 7 325 47.088 T 10-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 138 4.0E-30 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 PRINTS PR00421 Thioredoxin family signature 103 114 2.2E-6 T 10-10-2018 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 PRINTS PR00421 Thioredoxin family signature 56 64 2.2E-6 T 10-10-2018 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 PRINTS PR00421 Thioredoxin family signature 64 73 2.2E-6 T 10-10-2018 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 SUPERFAMILY SSF52833 23 141 1.84E-33 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 PIRSF PIRSF000077 35 139 1.2E-29 T 10-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 Gene3D G3DSA:3.40.30.10 30 142 5.5E-29 T 10-10-2018 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 10-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 Pfam PF00085 Thioredoxin 38 137 1.0E-26 T 10-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMQ28_10565 a1f08f70ab42a98953b37b5206a5e3e4 143 Gene3D G3DSA:2.20.28.140 1 29 1.4E-13 T 10-10-2018 AMQ28_12505 29d23a25f1495be2c12640bfc3a72843 94 Gene3D G3DSA:1.10.20.30 1 46 7.0E-6 T 10-10-2018 AMQ28_12505 29d23a25f1495be2c12640bfc3a72843 94 Pfam PF05164 Cell division protein ZapA 7 77 2.8E-12 T 10-10-2018 IPR007838 Cell division protein ZapA-like AMQ28_12505 29d23a25f1495be2c12640bfc3a72843 94 SUPERFAMILY SSF102829 7 88 7.59E-14 T 10-10-2018 IPR036192 Cell division protein ZapA-like superfamily AMQ28_08590 845072d5c22e77e37e54a6ddb16e8300 310 Pfam PF13737 Transposase DDE domain 23 130 3.4E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_12685 845072d5c22e77e37e54a6ddb16e8300 310 Pfam PF13737 Transposase DDE domain 23 130 3.4E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_11865 a912e47da7fadeb73decfc228fca1d60 227 SUPERFAMILY SSF161098 16 211 1.07E-36 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_11865 a912e47da7fadeb73decfc228fca1d60 227 Gene3D G3DSA:1.10.3720.10 9 226 2.6E-44 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_11865 a912e47da7fadeb73decfc228fca1d60 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 120 1.3E-23 T 10-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMQ28_11865 a912e47da7fadeb73decfc228fca1d60 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 226 2.1E-17 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 Gene3D G3DSA:3.40.30.10 1 186 8.0E-65 T 10-10-2018 AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 Pfam PF00578 AhpC/TSA family 5 132 3.4E-35 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 SUPERFAMILY SSF52833 1 186 3.21E-59 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 PIRSF PIRSF000239 1 187 2.1E-55 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 2.3E-6 T 10-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_01855 62dc94fff34d75a490b032c0564fc0f4 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 8.4E-105 T 10-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMQ28_03465 b4d9cbad070fdf470082f48c556437c7 217 SUPERFAMILY SSF46689 24 87 7.18E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_03465 b4d9cbad070fdf470082f48c556437c7 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 79 1.0E-12 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_03465 b4d9cbad070fdf470082f48c556437c7 217 Gene3D G3DSA:1.10.10.60 3 75 1.0E-14 T 10-10-2018 AMQ28_03465 b4d9cbad070fdf470082f48c556437c7 217 Gene3D G3DSA:1.10.357.10 76 209 4.8E-13 T 10-10-2018 AMQ28_03465 b4d9cbad070fdf470082f48c556437c7 217 SUPERFAMILY SSF48498 103 208 4.71E-8 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_05700 3799b71a8b027ccc0c9463802419ec39 283 SUPERFAMILY SSF52540 3 157 8.24E-10 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05700 3799b71a8b027ccc0c9463802419ec39 283 Pfam PF03668 P-loop ATPase protein family 4 280 4.7E-84 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 AMQ28_05700 3799b71a8b027ccc0c9463802419ec39 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 281 37.801 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 AMQ28_05700 3799b71a8b027ccc0c9463802419ec39 283 PIRSF PIRSF005052 2 283 2.9E-108 T 10-10-2018 IPR005337 RapZ-like family GO:0005524 AMQ28_04865 1fcf21e8764ee1db352127f8189a885d 196 Gene3D G3DSA:3.40.30.10 38 189 2.4E-47 T 10-10-2018 AMQ28_04865 1fcf21e8764ee1db352127f8189a885d 196 PIRSF PIRSF000239 35 193 1.7E-30 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_04865 1fcf21e8764ee1db352127f8189a885d 196 SUPERFAMILY SSF52833 41 187 5.62E-47 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_04865 1fcf21e8764ee1db352127f8189a885d 196 Pfam PF00578 AhpC/TSA family 42 166 1.8E-38 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_09775 edbd433c28f75b4ed310d76eb98b8fbb 196 SUPERFAMILY SSF140478 27 184 9.42E-52 T 10-10-2018 IPR023353 LemA-like domain superfamily AMQ28_09775 edbd433c28f75b4ed310d76eb98b8fbb 196 Pfam PF04011 LemA family 11 195 2.1E-66 T 10-10-2018 IPR007156 LemA AMQ28_09775 edbd433c28f75b4ed310d76eb98b8fbb 196 Gene3D G3DSA:1.20.1440.20 18 195 3.0E-63 T 10-10-2018 IPR023353 LemA-like domain superfamily AMQ28_02300 465ee14dc066aee50fd75fadcd8ebfae 482 SUPERFAMILY SSF52091 397 480 4.12E-10 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_02300 465ee14dc066aee50fd75fadcd8ebfae 482 Pfam PF00916 Sulfate permease family 167 356 1.3E-27 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMQ28_02300 465ee14dc066aee50fd75fadcd8ebfae 482 Pfam PF00916 Sulfate permease family 14 143 1.3E-25 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMQ28_02300 465ee14dc066aee50fd75fadcd8ebfae 482 Pfam PF01740 STAS domain 403 478 3.7E-5 T 10-10-2018 IPR002645 STAS domain AMQ28_02300 465ee14dc066aee50fd75fadcd8ebfae 482 Gene3D G3DSA:3.30.750.24 389 480 2.3E-23 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_10005 162c8e5648a4619d8f06c07117787318 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 120 18.654 T 10-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMQ28_10005 162c8e5648a4619d8f06c07117787318 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 4 115 7.0E-24 T 10-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMQ28_10005 162c8e5648a4619d8f06c07117787318 126 TIGRFAM TIGR00494 crcB: protein CrcB 4 118 3.9E-27 T 10-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMQ28_14110 0413153aceae8f62d9e551cf642533f8 290 Pfam PF10977 Protein of unknown function (DUF2797) 47 285 5.9E-91 T 10-10-2018 IPR021246 Protein of unknown function DUF2797 AMQ28_00660 aa33aa17ec9598c1f6089f68f868181f 457 Gene3D G3DSA:1.20.1250.20 13 431 2.4E-67 T 10-10-2018 AMQ28_00660 aa33aa17ec9598c1f6089f68f868181f 457 SUPERFAMILY SSF103473 7 430 1.96E-76 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_00660 aa33aa17ec9598c1f6089f68f868181f 457 Pfam PF07690 Major Facilitator Superfamily 27 315 2.1E-38 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00255 c69f2182bc0a36093a628e8f06c81f70 363 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 15 357 1.5E-152 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMQ28_00255 c69f2182bc0a36093a628e8f06c81f70 363 PIRSF PIRSF001361 3 363 3.7E-159 T 10-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMQ28_00255 c69f2182bc0a36093a628e8f06c81f70 363 Gene3D G3DSA:3.20.20.70 10 359 6.9E-153 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_00255 c69f2182bc0a36093a628e8f06c81f70 363 SUPERFAMILY SSF51569 16 357 1.26E-131 T 10-10-2018 AMQ28_00255 c69f2182bc0a36093a628e8f06c81f70 363 Pfam PF00793 DAHP synthetase I family 53 348 3.0E-94 T 10-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMQ28_00365 e587e65f64a2e62f42873273dd1ee3f7 335 Gene3D G3DSA:3.40.50.720 2 272 3.3E-87 T 10-10-2018 AMQ28_00365 e587e65f64a2e62f42873273dd1ee3f7 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 260 2.8E-40 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMQ28_00365 e587e65f64a2e62f42873273dd1ee3f7 335 Gene3D G3DSA:3.90.25.10 193 328 3.3E-87 T 10-10-2018 AMQ28_00365 e587e65f64a2e62f42873273dd1ee3f7 335 SUPERFAMILY SSF51735 2 331 2.82E-61 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_11210 331215ae15d0b3b1bcce2f6a7064f678 119 SUPERFAMILY SSF103196 6 111 1.99E-6 T 10-10-2018 AMQ28_11210 331215ae15d0b3b1bcce2f6a7064f678 119 Gene3D G3DSA:3.30.450.30 3 116 9.8E-6 T 10-10-2018 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 Gene3D G3DSA:3.90.230.10 4 256 1.9E-101 T 10-10-2018 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 Hamap MF_01974 Methionine aminopeptidase [map]. 6 254 39.451 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 6 252 1.1E-93 T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 8.6E-21 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 8.6E-21 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 8.6E-21 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 8.6E-21 T 10-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 Pfam PF00557 Metallopeptidase family M24 15 245 1.7E-49 T 10-10-2018 IPR000994 Peptidase M24 AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 SUPERFAMILY SSF55920 6 258 1.57E-87 T 10-10-2018 IPR036005 Creatinase/aminopeptidase-like AMQ28_01130 db840c63eebe7bf40d329511d13ee807 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 10-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMQ28_08370 08ac959b2b7b59731cb6689a89456ef4 191 SUPERFAMILY SSF55846 10 187 2.62E-60 T 10-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMQ28_08370 08ac959b2b7b59731cb6689a89456ef4 191 SMART SM00644 22 172 9.4E-38 T 10-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMQ28_08370 08ac959b2b7b59731cb6689a89456ef4 191 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 32 173 2.4E-24 T 10-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMQ28_08370 08ac959b2b7b59731cb6689a89456ef4 191 Gene3D G3DSA:3.40.80.10 9 190 3.4E-53 T 10-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 SUPERFAMILY SSF48163 313 471 1.05E-34 T 10-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 468 7.0E-145 T 10-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 470 30.434 T 10-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 319 4.3E-112 T 10-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 10-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 SUPERFAMILY SSF52374 3 307 5.36E-113 T 10-10-2018 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 2.1E-22 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 2.1E-22 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 2.1E-22 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 2.1E-22 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 2.1E-22 T 10-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 Gene3D G3DSA:1.10.10.350 370 493 3.0E-29 T 10-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMQ28_09660 d196b038c446961a5fa1db922d611a5a 502 Gene3D G3DSA:3.40.50.620 1 327 1.5E-150 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 SUPERFAMILY SSF52540 11 174 1.72E-30 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 Hamap MF_00109 Shikimate kinase [aroK]. 9 175 30.091 T 10-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 Gene3D G3DSA:3.40.50.300 2 179 3.5E-59 T 10-10-2018 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 ProSitePatterns PS01128 Shikimate kinase signature. 65 90 - T 10-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 Pfam PF01202 Shikimate kinase 18 173 1.9E-54 T 10-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 PRINTS PR01100 Shikimate kinase family signature 12 27 7.3E-26 T 10-10-2018 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 PRINTS PR01100 Shikimate kinase family signature 64 72 7.3E-26 T 10-10-2018 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 PRINTS PR01100 Shikimate kinase family signature 103 120 7.3E-26 T 10-10-2018 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 PRINTS PR01100 Shikimate kinase family signature 36 49 7.3E-26 T 10-10-2018 AMQ28_09745 3d258ff233da2c95c13d1e4c11bb32f6 182 PRINTS PR01100 Shikimate kinase family signature 82 91 7.3E-26 T 10-10-2018 AMQ28_06660 224fdcd81ffa6f39668d03306452c4da 184 SUPERFAMILY SSF143456 4 184 7.19E-59 T 10-10-2018 AMQ28_06660 224fdcd81ffa6f39668d03306452c4da 184 Pfam PF02622 Uncharacterized ACR, COG1678 15 171 5.1E-43 T 10-10-2018 IPR003774 Protein of unknown function UPF0301 AMQ28_06660 224fdcd81ffa6f39668d03306452c4da 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 184 33.2 T 10-10-2018 IPR003774 Protein of unknown function UPF0301 AMQ28_06660 224fdcd81ffa6f39668d03306452c4da 184 Gene3D G3DSA:3.40.1740.10 1 184 3.8E-72 T 10-10-2018 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 ProSitePatterns PS01120 Urease nickel ligands signature. 126 139 - T 10-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 Gene3D G3DSA:3.20.20.140 128 566 2.8E-298 T 10-10-2018 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 ProSitePatterns PS00145 Urease active site. 316 332 - T 10-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 1 118 1.8E-55 T 10-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 Pfam PF01979 Amidohydrolase family 124 453 1.7E-81 T 10-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 SUPERFAMILY SSF51338 423 476 1.38E-6 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 Hamap MF_01953 Urease subunit alpha [ureC]. 1 566 57.266 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 566 9.9E-299 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 Gene3D G3DSA:2.30.40.10 3 479 2.8E-298 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 SUPERFAMILY SSF51338 2 176 3.36E-62 T 10-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 SUPERFAMILY SSF51556 128 566 6.57E-200 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 333 349 3.0E-34 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 3.0E-34 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 294 311 3.0E-34 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_07495 66f3d5d01f26c9f5b1f6493fd24b8384 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 3.0E-34 T 10-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMQ28_02595 264d339ee9e910dd55923b0c543431ec 377 PIRSF PIRSF026508 4 373 2.5E-115 T 10-10-2018 IPR008863 Toxic anion resistance AMQ28_02595 264d339ee9e910dd55923b0c543431ec 377 Pfam PF05816 Toxic anion resistance protein (TelA) 43 364 4.9E-85 T 10-10-2018 IPR008863 Toxic anion resistance AMQ28_06360 a7bede13e2e35dbe7236b2c09a23294e 214 SMART SM00849 13 193 7.1E-40 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_06360 a7bede13e2e35dbe7236b2c09a23294e 214 SUPERFAMILY SSF56281 3 209 1.7E-54 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_06360 a7bede13e2e35dbe7236b2c09a23294e 214 Gene3D G3DSA:3.60.15.10 2 210 2.7E-74 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_06360 a7bede13e2e35dbe7236b2c09a23294e 214 Pfam PF00753 Metallo-beta-lactamase superfamily 10 193 2.7E-28 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 453 3.6E-204 T 10-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 SUPERFAMILY SSF53244 314 452 2.09E-39 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 453 57.141 T 10-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Pfam PF08245 Mur ligase middle domain 108 295 1.3E-22 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Pfam PF01225 Mur ligase family, catalytic domain 2 99 9.8E-16 T 10-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Gene3D G3DSA:3.40.50.720 1 90 8.1E-33 T 10-10-2018 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 363 5.8E-11 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Gene3D G3DSA:3.90.190.20 318 454 3.5E-32 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 SUPERFAMILY SSF53623 97 312 3.79E-51 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 SUPERFAMILY SSF51984 1 89 1.96E-20 T 10-10-2018 AMQ28_08165 bbd19670a1fdd64f27f4d1382c49ef8c 454 Gene3D G3DSA:3.40.1190.10 91 317 5.5E-57 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_06690 c6f2fa714f5c6e6ce3827be097cae95e 205 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 28 202 2.9E-26 T 10-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMQ28_06690 c6f2fa714f5c6e6ce3827be097cae95e 205 Gene3D G3DSA:2.60.120.590 21 205 1.0E-56 T 10-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily AMQ28_06690 c6f2fa714f5c6e6ce3827be097cae95e 205 SUPERFAMILY SSF51197 27 204 3.98E-53 T 10-10-2018 AMQ28_00595 bd6006e70464fa9b603d0c441ca1f998 406 TIGRFAM TIGR00843 benE: benzoate transporter 1 388 5.6E-187 T 10-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMQ28_00595 bd6006e70464fa9b603d0c441ca1f998 406 Pfam PF03594 Benzoate membrane transport protein 11 387 8.0E-160 T 10-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMQ28_02985 2b670fc8c2baeba261860a262b7a17a2 270 Pfam PF01063 Amino-transferase class IV 25 241 3.0E-42 T 10-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMQ28_02985 2b670fc8c2baeba261860a262b7a17a2 270 Gene3D G3DSA:3.30.470.10 3 107 2.1E-19 T 10-10-2018 AMQ28_02985 2b670fc8c2baeba261860a262b7a17a2 270 SUPERFAMILY SSF56752 11 264 7.33E-52 T 10-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMQ28_02985 2b670fc8c2baeba261860a262b7a17a2 270 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 6 261 8.1E-65 T 10-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 AMQ28_02985 2b670fc8c2baeba261860a262b7a17a2 270 Gene3D G3DSA:3.20.10.10 125 263 3.9E-36 T 10-10-2018 AMQ28_08285 dbb8740b9f88781affb6ecbc4dc01d8f 144 SUPERFAMILY SSF53098 29 113 4.93E-12 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08285 dbb8740b9f88781affb6ecbc4dc01d8f 144 Pfam PF01609 Transposase DDE domain 31 74 4.9E-6 T 10-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 10-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 SUPERFAMILY SSF47928 3 106 8.89E-24 T 10-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 4.3E-43 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 18.345 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 9.2E-24 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 9.2E-24 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 9.2E-24 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 9.2E-24 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 9.2E-24 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 5.2E-51 T 10-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07125 81912f51ae69d8a3432270963e6e273b 178 Gene3D G3DSA:1.10.520.20 2 107 1.5E-29 T 10-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 Pfam PF00463 Isocitrate lyase family 97 270 4.7E-24 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 Pfam PF00463 Isocitrate lyase family 443 521 8.9E-11 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 Pfam PF00463 Isocitrate lyase family 317 399 3.5E-11 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 PIRSF PIRSF001362 281 410 1.6E-13 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 PIRSF PIRSF001362 2 275 5.3E-31 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 PIRSF PIRSF001362 415 531 2.9E-7 T 10-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMQ28_03665 6c33722bb012781c8dfe54840a4629b9 533 SUPERFAMILY SSF51621 8 515 8.52E-123 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_08870 eaa18a7c3129d07cb470a2d7cf046fa8 390 SUPERFAMILY SSF56349 36 336 1.82E-17 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_08870 eaa18a7c3129d07cb470a2d7cf046fa8 390 Gene3D G3DSA:1.10.443.10 166 380 1.4E-19 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_08870 eaa18a7c3129d07cb470a2d7cf046fa8 390 Pfam PF00589 Phage integrase family 189 335 9.9E-10 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_13045 cb587ae7861a517c47fd008990388f3f 184 Gene3D G3DSA:1.10.260.40 19 85 7.7E-8 T 10-10-2018 AMQ28_13045 cb587ae7861a517c47fd008990388f3f 184 SUPERFAMILY SSF47413 23 87 6.76E-10 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_13045 cb587ae7861a517c47fd008990388f3f 184 Pfam PF01381 Helix-turn-helix 34 81 2.4E-6 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_05495 b06c1ff1922a6cdbf57594e835be4305 205 Gene3D G3DSA:3.40.50.150 2 202 4.5E-29 T 10-10-2018 AMQ28_05495 b06c1ff1922a6cdbf57594e835be4305 205 Pfam PF13649 Methyltransferase domain 49 134 3.0E-14 T 10-10-2018 AMQ28_05495 b06c1ff1922a6cdbf57594e835be4305 205 SUPERFAMILY SSF53335 6 189 3.92E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_08565 2714a6a7e0eac8a603bf08b73d869cd4 145 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 27 143 6.4E-23 T 10-10-2018 IPR019223 Domain of unknown function DUF2147 AMQ28_08565 2714a6a7e0eac8a603bf08b73d869cd4 145 Gene3D G3DSA:2.40.128.520 23 145 5.1E-16 T 10-10-2018 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 302 35.861 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 Pfam PF01795 MraW methylase family 2 301 1.5E-103 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 301 9.0E-104 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 Gene3D G3DSA:1.10.150.170 110 209 2.5E-99 T 10-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 SUPERFAMILY SSF81799 111 207 6.54E-32 T 10-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 Gene3D G3DSA:3.40.50.150 6 301 2.5E-99 T 10-10-2018 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 PIRSF PIRSF004486 1 303 1.9E-100 T 10-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMQ28_09680 3187872468d55dfa926a621eca61fce0 307 SUPERFAMILY SSF53335 3 302 1.71E-42 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 SUPERFAMILY SSF48008 108 229 2.88E-24 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 SMART SM00345 19 78 4.2E-15 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 Pfam PF07729 FCD domain 110 221 9.2E-21 T 10-10-2018 IPR011711 GntR, C-terminal AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 SUPERFAMILY SSF46785 8 82 2.4E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 Gene3D G3DSA:1.10.10.10 11 83 9.6E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 SMART SM00895 107 228 1.4E-18 T 10-10-2018 IPR011711 GntR, C-terminal AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 Gene3D G3DSA:1.20.120.530 105 236 2.9E-25 T 10-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 4.7E-14 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 2.0E-7 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_04665 8a486e659b7302cfd1a2d4bb83c1074e 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 2.0E-7 T 10-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 10-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.2E-40 T 10-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 Gene3D G3DSA:3.30.1140.32 108 208 6.7E-45 T 10-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.9E-94 T 10-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 SUPERFAMILY SSF54821 108 206 6.28E-40 T 10-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 Gene3D G3DSA:3.30.300.20 18 107 2.0E-26 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 SUPERFAMILY SSF54814 2 106 1.26E-35 T 10-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 Pfam PF07650 KH domain 39 110 3.6E-18 T 10-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 SMART SM00322 60 125 7.0E-6 T 10-10-2018 IPR004087 K Homology domain GO:0003676 AMQ28_10215 1ba1c8a2f0333383809cf3be028e981c 250 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.257 T 10-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 SUPERFAMILY SSF100950 3 207 7.33E-72 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 Pfam PF01144 Coenzyme A transferase 7 200 1.3E-42 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 Gene3D G3DSA:3.40.1080.10 2 208 6.2E-101 T 10-10-2018 AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 SMART SM00882 6 202 1.9E-74 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 5.7E-97 T 10-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMQ28_00670 092e39c6270f6e10eddb580100d2f35e 209 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 10-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 PIRSF PIRSF000161 3 270 1.7E-84 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 Gene3D G3DSA:3.40.50.720 7 266 7.5E-100 T 10-10-2018 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 267 34.868 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 SUPERFAMILY SSF51735 5 270 1.22E-47 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 7.5E-42 T 10-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 127 2.3E-39 T 10-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 SUPERFAMILY SSF55347 129 238 1.11E-37 T 10-10-2018 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 267 1.2E-95 T 10-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 Gene3D G3DSA:3.30.360.10 129 236 7.5E-100 T 10-10-2018 AMQ28_07840 920e913eccad343f05b07c21bb1780ff 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 10-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMQ28_11115 699dfe36c29e668b41a3901f61a074a6 193 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 127 137 - T 10-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 AMQ28_11115 699dfe36c29e668b41a3901f61a074a6 193 Pfam PF00782 Dual specificity phosphatase, catalytic domain 60 162 1.1E-13 T 10-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 AMQ28_11115 699dfe36c29e668b41a3901f61a074a6 193 SUPERFAMILY SSF52799 41 162 2.88E-25 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_11115 699dfe36c29e668b41a3901f61a074a6 193 Gene3D G3DSA:3.90.190.10 30 192 9.6E-34 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_11115 699dfe36c29e668b41a3901f61a074a6 193 SMART SM00195 43 182 0.0031 T 10-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 8.1E-36 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 8.1E-36 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 8.1E-36 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 8.1E-36 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 Pfam PF03840 Preprotein translocase SecG subunit 4 72 2.6E-21 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_06610 be86546e4b30d48b4a1e29515f584e90 109 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 5.3E-26 T 10-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMQ28_09780 ccb70a6bf76c4255fda556b1d136a858 357 Pfam PF04536 TPM domain 97 220 6.9E-38 T 10-10-2018 IPR007621 TPM domain AMQ28_09780 ccb70a6bf76c4255fda556b1d136a858 357 Gene3D G3DSA:3.10.310.50 85 232 2.7E-46 T 10-10-2018 AMQ28_07785 242cc06847cbe34f6e5e07066f768d78 234 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 145 231 1.2E-29 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_07785 242cc06847cbe34f6e5e07066f768d78 234 Gene3D G3DSA:1.10.287.460 39 95 1.6E-10 T 10-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 AMQ28_07785 242cc06847cbe34f6e5e07066f768d78 234 SUPERFAMILY SSF54534 42 234 3.34E-57 T 10-10-2018 AMQ28_07785 242cc06847cbe34f6e5e07066f768d78 234 Gene3D G3DSA:3.10.50.40 96 234 4.3E-56 T 10-10-2018 AMQ28_07785 242cc06847cbe34f6e5e07066f768d78 234 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 33 135 2.5E-22 T 10-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AMQ28_12225 da79d67c311f1a943f96fb431df15940 132 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 129 6.1E-30 T 10-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12225 da79d67c311f1a943f96fb431df15940 132 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 125 1.4E-22 T 10-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12225 da79d67c311f1a943f96fb431df15940 132 SUPERFAMILY SSF81343 7 130 3.43E-25 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12225 da79d67c311f1a943f96fb431df15940 132 Gene3D G3DSA:1.20.1300.10 2 131 1.1E-32 T 10-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_12225 da79d67c311f1a943f96fb431df15940 132 PIRSF PIRSF000178 2 131 1.6E-19 T 10-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMQ28_13590 bfc7d1d9d6d024ea26476a85c6d9caef 128 SUPERFAMILY SSF69118 4 123 3.27E-34 T 10-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMQ28_13590 bfc7d1d9d6d024ea26476a85c6d9caef 128 Gene3D G3DSA:1.20.1290.10 3 128 3.1E-37 T 10-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMQ28_13590 bfc7d1d9d6d024ea26476a85c6d9caef 128 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 3.0E-22 T 10-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMQ28_01765 c6d34c721312a023a2c937dc390c9ea8 337 SUPERFAMILY SSF56112 7 307 3.57E-42 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_01765 c6d34c721312a023a2c937dc390c9ea8 337 Gene3D G3DSA:3.90.1200.10 93 331 1.4E-65 T 10-10-2018 AMQ28_01765 c6d34c721312a023a2c937dc390c9ea8 337 Pfam PF01636 Phosphotransferase enzyme family 23 244 4.9E-24 T 10-10-2018 IPR002575 Aminoglycoside phosphotransferase AMQ28_01765 c6d34c721312a023a2c937dc390c9ea8 337 Gene3D G3DSA:3.30.200.20 1 92 4.4E-24 T 10-10-2018 AMQ28_11110 0b627e0e86a16a9ff23fe24ac77165e6 341 SUPERFAMILY SSF110997 259 332 5.75E-13 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMQ28_11110 0b627e0e86a16a9ff23fe24ac77165e6 341 Gene3D G3DSA:3.30.70.1070 262 332 1.9E-7 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMQ28_11110 0b627e0e86a16a9ff23fe24ac77165e6 341 Pfam PF05036 Sporulation related domain 260 332 1.7E-15 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Pfam PF13177 DNA polymerase III, delta subunit 19 177 2.5E-40 T 10-10-2018 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 SUPERFAMILY SSF52540 32 222 1.8E-56 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 355 1.8E-133 T 10-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 SMART SM00382 36 177 1.4E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 40 58 2.1E-5 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 123 141 2.1E-5 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 581 700 3.8E-5 T 10-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Gene3D G3DSA:1.20.272.10 241 361 2.2E-31 T 10-10-2018 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 365 6.7E-28 T 10-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 SUPERFAMILY SSF48019 242 364 1.36E-27 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Gene3D G3DSA:3.40.50.300 12 176 3.2E-103 T 10-10-2018 AMQ28_01485 9a1d1ba89217a47d10ca3327ca6f5931 705 Gene3D G3DSA:1.10.8.60 7 239 3.2E-103 T 10-10-2018 AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 Gene3D G3DSA:3.40.1160.10 14 297 3.9E-88 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 SUPERFAMILY SSF55729 302 427 1.51E-17 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 Gene3D G3DSA:3.40.630.30 298 450 1.5E-36 T 10-10-2018 AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 PIRSF PIRSF000423 6 450 1.3E-190 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 Pfam PF00583 Acetyltransferase (GNAT) family 331 410 2.2E-9 T 10-10-2018 IPR000182 GNAT domain AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 Pfam PF00696 Amino acid kinase family 33 239 4.3E-22 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 16 450 4.2E-179 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 SUPERFAMILY SSF53633 12 296 1.37E-66 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_08310 4c1328e32f48fcd215517c63a9faed39 450 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 450 199.565 T 10-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 SUPERFAMILY SSF46785 10 82 2.02E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 Gene3D G3DSA:1.10.10.10 9 83 5.8E-17 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 Gene3D G3DSA:3.30.450.40 86 254 1.6E-24 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 SMART SM00346 10 99 5.8E-15 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 Pfam PF09339 IclR helix-turn-helix domain 12 62 2.8E-13 T 10-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 SUPERFAMILY SSF55781 74 256 3.47E-30 T 10-10-2018 AMQ28_13610 4e32e6c79b443f267b82579ecfb98a73 259 Pfam PF01614 Bacterial transcriptional regulator 128 254 2.9E-9 T 10-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 357 5.7E-156 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 SUPERFAMILY SSF53383 2 357 3.89E-115 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 358 49.924 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 Gene3D G3DSA:3.90.1150.10 250 359 5.8E-43 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 205 - T 10-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 Pfam PF00266 Aminotransferase class-V 4 347 1.8E-53 T 10-10-2018 IPR000192 Aminotransferase class V domain AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 PIRSF PIRSF000525 1 359 4.0E-147 T 10-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMQ28_03260 5c528ae2cc91591c9cd4d326b40438d5 359 Gene3D G3DSA:3.40.640.10 16 249 1.5E-91 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 40 318 3.3E-70 T 10-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 SUPERFAMILY SSF53850 37 270 8.08E-50 T 10-10-2018 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 Gene3D G3DSA:3.40.190.10 117 216 5.9E-106 T 10-10-2018 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 SMART SM00062 37 257 2.6E-23 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 Gene3D G3DSA:1.10.8.450 248 280 5.9E-106 T 10-10-2018 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 Gene3D G3DSA:3.40.190.10 38 311 5.9E-106 T 10-10-2018 AMQ28_08305 305ba4e6f27854731736d9ebadc5cb08 320 Pfam PF09084 NMT1/THI5 like 62 257 1.3E-16 T 10-10-2018 IPR015168 SsuA/THI5-like AMQ28_06705 ec64d97723b8c6098f2a74a0cb10013f 452 Gene3D G3DSA:1.20.1600.10 22 448 4.8E-100 T 10-10-2018 AMQ28_06705 ec64d97723b8c6098f2a74a0cb10013f 452 Pfam PF02321 Outer membrane efflux protein 244 429 1.2E-30 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_06705 ec64d97723b8c6098f2a74a0cb10013f 452 Pfam PF02321 Outer membrane efflux protein 24 220 4.1E-21 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_06705 ec64d97723b8c6098f2a74a0cb10013f 452 SUPERFAMILY SSF56954 2 432 6.15E-85 T 10-10-2018 AMQ28_06705 ec64d97723b8c6098f2a74a0cb10013f 452 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 443 4.3E-80 T 10-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 AMQ28_13755 59bacaef8fe7f1ab4ef577471795a2a6 290 Gene3D G3DSA:3.40.190.10 43 271 5.6E-76 T 10-10-2018 AMQ28_13755 59bacaef8fe7f1ab4ef577471795a2a6 290 Gene3D G3DSA:3.40.190.10 119 230 5.6E-76 T 10-10-2018 AMQ28_13755 59bacaef8fe7f1ab4ef577471795a2a6 290 SUPERFAMILY SSF53850 39 280 2.18E-67 T 10-10-2018 AMQ28_13755 59bacaef8fe7f1ab4ef577471795a2a6 290 Pfam PF03180 NLPA lipoprotein 44 278 5.8E-68 T 10-10-2018 IPR004872 Lipoprotein NlpA family AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 SUPERFAMILY SSF53901 269 390 2.69E-38 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 4.4E-87 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 Gene3D G3DSA:3.40.47.10 5 274 3.5E-142 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 5.7E-129 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 PIRSF PIRSF000429 1 391 2.4E-115 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 SUPERFAMILY SSF53901 3 268 2.88E-80 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 10-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 Gene3D G3DSA:3.40.47.10 126 388 3.5E-142 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 10-10-2018 IPR020610 Thiolase, active site GO:0016747 AMQ28_04690 145d6fce0905874ce6a0db2f23ccbe03 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 3.9E-43 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMQ28_04885 a1e0d02c976c25763add11bbe5c0ad53 239 Pfam PF00665 Integrase core domain 74 185 1.7E-22 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_04885 a1e0d02c976c25763add11bbe5c0ad53 239 SUPERFAMILY SSF53098 72 231 3.29E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_04885 a1e0d02c976c25763add11bbe5c0ad53 239 Gene3D G3DSA:3.30.420.10 69 232 2.4E-16 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_04885 a1e0d02c976c25763add11bbe5c0ad53 239 Pfam PF13276 HTH-like domain 1 50 8.7E-12 T 10-10-2018 IPR025948 HTH-like domain AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 407 416 - T 10-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 Pfam PF00067 Cytochrome P450 297 438 9.8E-18 T 10-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 SUPERFAMILY SSF48264 76 457 4.45E-77 T 10-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 Gene3D G3DSA:1.10.630.10 43 466 7.7E-100 T 10-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 207 222 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 383 398 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 414 425 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 144 155 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 355 382 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 405 414 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_08985 1dd1f739b87d87d474a77eb32d5781b5 466 PRINTS PR00359 B-class P450 signature 338 349 4.8E-28 T 10-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMQ28_00305 b8111c362a92e3263d30604801decd1c 209 Pfam PF13563 2'-5' RNA ligase superfamily 38 190 2.3E-11 T 10-10-2018 AMQ28_00305 b8111c362a92e3263d30604801decd1c 209 SUPERFAMILY SSF55144 36 185 1.38E-7 T 10-10-2018 IPR009097 Cyclic phosphodiesterase AMQ28_00305 b8111c362a92e3263d30604801decd1c 209 Gene3D G3DSA:3.90.1140.10 31 207 3.5E-9 T 10-10-2018 AMQ28_07705 103e2e3666a6715e6717ea21fe51aa92 389 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 382 4.2E-95 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMQ28_07705 103e2e3666a6715e6717ea21fe51aa92 389 SUPERFAMILY SSF53383 9 385 7.15E-102 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_07705 103e2e3666a6715e6717ea21fe51aa92 389 PIRSF PIRSF000390 1 389 6.1E-114 T 10-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMQ28_07705 103e2e3666a6715e6717ea21fe51aa92 389 Gene3D G3DSA:3.90.1150.10 257 388 3.1E-15 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_07705 103e2e3666a6715e6717ea21fe51aa92 389 Gene3D G3DSA:3.40.640.10 5 255 2.3E-85 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_12875 d8087f90da18953db200af1d41f7fbba 151 Pfam PF06127 Protein of unknown function (DUF962) 1 135 2.3E-21 T 10-10-2018 IPR009305 Protein of unknown function DUF962 AMQ28_02430 9977264c09e1a7a82c3279e855b0e95f 183 Pfam PF01292 Prokaryotic cytochrome b561 8 181 1.9E-24 T 10-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMQ28_02430 9977264c09e1a7a82c3279e855b0e95f 183 SUPERFAMILY SSF81342 3 180 6.59E-33 T 10-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 Gene3D G3DSA:2.170.130.10 54 180 1.5E-22 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 73 720 1.1E-118 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 SUPERFAMILY SSF56935 33 720 3.66E-106 T 10-10-2018 AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 Gene3D G3DSA:2.40.170.20 181 720 5.2E-82 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 170 5.7E-11 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_00845 bbcb8a29bc209f823154e132d5bac969 720 Pfam PF00593 TonB dependent receptor 279 714 1.6E-35 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_08575 2c02b3acb26e56e230fb7d0ea4000f07 274 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 14 270 2.5E-68 T 10-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMQ28_08575 2c02b3acb26e56e230fb7d0ea4000f07 274 SUPERFAMILY SSF56219 14 271 1.44E-71 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMQ28_08575 2c02b3acb26e56e230fb7d0ea4000f07 274 Gene3D G3DSA:3.60.10.10 12 272 6.7E-80 T 10-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMQ28_08575 2c02b3acb26e56e230fb7d0ea4000f07 274 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 263 1.9E-21 T 10-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMQ28_08575 2c02b3acb26e56e230fb7d0ea4000f07 274 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 14 268 3.8E-65 T 10-10-2018 AMQ28_13745 cde9a4e26198c4fa6ca573ae322eceee 231 Gene3D G3DSA:1.10.3720.10 20 230 3.0E-43 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_13745 cde9a4e26198c4fa6ca573ae322eceee 231 SUPERFAMILY SSF161098 25 219 1.1E-41 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_13745 cde9a4e26198c4fa6ca573ae322eceee 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 223 4.9E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_08780 9487001dc6bc6c4dcad439fd90111ac4 571 Gene3D G3DSA:1.20.1730.10 56 568 3.9E-61 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily AMQ28_08780 9487001dc6bc6c4dcad439fd90111ac4 571 Pfam PF00474 Sodium:solute symporter family 68 489 4.5E-112 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMQ28_08780 9487001dc6bc6c4dcad439fd90111ac4 571 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 489 8.2E-63 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMQ28_08780 9487001dc6bc6c4dcad439fd90111ac4 571 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 10-10-2018 IPR018212 Sodium/solute symporter, conserved site AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 10-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 7.1E-32 T 10-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 SUPERFAMILY SSF54995 1 101 1.05E-35 T 10-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 Pfam PF01250 Ribosomal protein S6 3 91 7.9E-25 T 10-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 Gene3D G3DSA:3.30.70.60 1 92 3.0E-29 T 10-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMQ28_01405 fc8240f8ab5a575c78ae51aca75e0e14 128 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.517 T 10-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 Gene3D G3DSA:3.30.420.490 120 228 8.4E-51 T 10-10-2018 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 Gene3D G3DSA:3.30.420.40 6 235 8.4E-51 T 10-10-2018 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 SUPERFAMILY SSF53067 3 112 5.96E-21 T 10-10-2018 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 239 1.9E-29 T 10-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 243 19.909 T 10-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 SUPERFAMILY SSF53067 119 242 3.89E-27 T 10-10-2018 AMQ28_04970 092931f1c14b40b94fab6a1780dcbf58 249 Pfam PF03309 Type III pantothenate kinase 4 199 9.1E-44 T 10-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMQ28_13130 6aa487feddc30afcd7b01eab4d685918 142 Gene3D G3DSA:3.40.960.10 31 133 2.1E-5 T 10-10-2018 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 SUPERFAMILY SSF56796 3 354 1.7E-113 T 10-10-2018 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 Pfam PF01761 3-dehydroquinate synthase 66 323 3.3E-106 T 10-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 Gene3D G3DSA:1.20.1090.10 172 360 2.3E-70 T 10-10-2018 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 68.627 T 10-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 PIRSF PIRSF001455 7 361 5.0E-103 T 10-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 14 352 3.1E-113 T 10-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMQ28_09750 8fe60b05dd1401bd0af00b5cfc934f69 361 Gene3D G3DSA:3.40.50.1970 1 171 1.5E-65 T 10-10-2018 AMQ28_10690 7182bf90e52339569f6602f341f3ed82 347 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 32 189 1.2E-38 T 10-10-2018 IPR017482 Putative phage-type endonuclease AMQ28_10690 7182bf90e52339569f6602f341f3ed82 347 Pfam PF09588 YqaJ-like viral recombinase domain 38 179 1.3E-35 T 10-10-2018 IPR019080 YqaJ viral recombinase AMQ28_10690 7182bf90e52339569f6602f341f3ed82 347 SUPERFAMILY SSF52980 22 222 6.97E-33 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_10690 7182bf90e52339569f6602f341f3ed82 347 Gene3D G3DSA:3.90.320.10 35 242 7.6E-38 T 10-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 PIRSF PIRSF004491 1 331 4.6E-106 T 10-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 SMART SM00904 179 326 2.8E-38 T 10-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 320 1.0E-71 T 10-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 SUPERFAMILY SSF52374 16 171 1.24E-32 T 10-10-2018 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 Gene3D G3DSA:3.40.50.620 6 181 2.0E-58 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 Pfam PF01687 Riboflavin kinase 180 321 5.3E-25 T 10-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 Gene3D G3DSA:2.40.30.30 182 329 1.2E-23 T 10-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 Pfam PF06574 FAD synthetase 16 163 5.7E-49 T 10-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMQ28_08250 d88ba6f39dddc6d80a053a8f64cd2e7f 333 SUPERFAMILY SSF82114 170 324 3.49E-30 T 10-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMQ28_12885 59c58b3412818e7dcd6959375ef42872 333 Gene3D G3DSA:1.10.8.350 43 209 1.6E-91 T 10-10-2018 AMQ28_12885 59c58b3412818e7dcd6959375ef42872 333 Pfam PF13406 Transglycosylase SLT domain 36 327 1.8E-85 T 10-10-2018 IPR031304 Transglycosylase SLT domain 2 AMQ28_12885 59c58b3412818e7dcd6959375ef42872 333 Gene3D G3DSA:1.10.530.10 76 327 1.6E-91 T 10-10-2018 AMQ28_12885 59c58b3412818e7dcd6959375ef42872 333 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 40 330 1.5E-91 T 10-10-2018 IPR011757 Lytic transglycosylase MltB AMQ28_12885 59c58b3412818e7dcd6959375ef42872 333 SUPERFAMILY SSF53955 22 331 9.56E-79 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 6 304 57.71 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 SUPERFAMILY SSF52402 8 211 1.04E-73 T 10-10-2018 AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 11 304 3.5E-161 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 PIRSF PIRSF002936 1 304 1.9E-157 T 10-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 Gene3D G3DSA:3.40.50.620 9 214 6.3E-64 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_12275 8afc38eca4b4505af38339ee78faf128 304 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 31 259 5.3E-64 T 10-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 756 2.0E-87 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 Gene3D G3DSA:2.40.170.20 176 757 1.2E-143 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 SUPERFAMILY SSF56935 28 757 4.4E-133 T 10-10-2018 AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 160 3.1E-19 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 Pfam PF00593 TonB dependent receptor 236 756 1.5E-57 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_05540 b1bf455e7582224f1a4d94814c50cf62 757 Gene3D G3DSA:2.170.130.10 44 172 1.6E-41 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 Pfam PF03486 HI0933-like protein 6 397 1.9E-137 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 SUPERFAMILY SSF51905 4 398 1.64E-53 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 Gene3D G3DSA:3.50.50.60 9 393 1.4E-118 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 8 396 9.7E-118 T 10-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.8E-5 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 3.8E-5 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 Gene3D G3DSA:2.40.30.10 192 344 1.4E-118 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 1.3E-8 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 367 374 1.3E-8 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.3E-8 T 10-10-2018 AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 Gene3D G3DSA:1.10.8.260 265 327 1.4E-118 T 10-10-2018 IPR023166 HI0933-like insert domain superfamily AMQ28_04460 c309d79d1c43711df9a0843bc6fb2451 399 SUPERFAMILY SSF160996 194 345 8.24E-34 T 10-10-2018 AMQ28_01725 7dcea5b51a81b0dd58328d3b0806937a 334 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 6 334 33.668 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMQ28_01725 7dcea5b51a81b0dd58328d3b0806937a 334 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 24 318 2.7E-67 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMQ28_01725 7dcea5b51a81b0dd58328d3b0806937a 334 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 326 2.7E-96 T 10-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMQ28_01725 7dcea5b51a81b0dd58328d3b0806937a 334 SUPERFAMILY SSF52540 51 190 3.77E-11 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13505 3e8a10831fa54929a2e21823904b8f9d 194 SMART SM00867 25 189 2.7E-63 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMQ28_13505 3e8a10831fa54929a2e21823904b8f9d 194 SUPERFAMILY SSF101874 24 188 5.75E-50 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMQ28_13505 3e8a10831fa54929a2e21823904b8f9d 194 Gene3D G3DSA:2.40.128.110 24 189 3.5E-48 T 10-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMQ28_13505 3e8a10831fa54929a2e21823904b8f9d 194 Pfam PF04264 YceI-like domain 26 188 3.0E-40 T 10-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMQ28_03375 25e0427a395fc8b2082fd656322d6163 565 Pfam PF03929 PepSY-associated TM region 16 405 1.4E-66 T 10-10-2018 IPR005625 PepSY-associated TM protein AMQ28_10175 bdfa411d9a46a8a78455695384fcd3ae 245 Gene3D G3DSA:3.40.50.880 5 241 1.5E-49 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_10175 bdfa411d9a46a8a78455695384fcd3ae 245 SUPERFAMILY SSF52317 31 202 1.23E-42 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_10175 bdfa411d9a46a8a78455695384fcd3ae 245 Pfam PF00117 Glutamine amidotransferase class-I 40 191 2.1E-16 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_03640 509ad1b5ea500364ad9f8ab6cc947d90 116 SUPERFAMILY SSF54593 1 115 5.04E-15 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_03640 509ad1b5ea500364ad9f8ab6cc947d90 116 Gene3D G3DSA:3.10.180.10 1 116 3.2E-32 T 10-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Gene3D G3DSA:3.40.50.300 340 543 2.1E-64 T 10-10-2018 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 630 648 - T 10-10-2018 IPR028299 ClpA/B, conserved site 2 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Pfam PF07724 AAA domain (Cdc48 subfamily) 595 758 5.1E-55 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 291 303 - T 10-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SUPERFAMILY SSF52540 545 851 1.77E-80 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SUPERFAMILY SSF52540 157 544 6.75E-96 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Gene3D G3DSA:3.40.50.300 145 339 3.7E-74 T 10-10-2018 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Gene3D G3DSA:3.40.50.300 549 763 2.1E-87 T 10-10-2018 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Gene3D G3DSA:1.10.1780.10 1 144 2.1E-26 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Gene3D G3DSA:1.10.8.60 765 859 9.0E-28 T 10-10-2018 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 316 9.4E-13 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SMART SM00382 596 751 1.6E-11 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SMART SM00382 195 340 2.3E-12 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SUPERFAMILY SSF81923 4 153 4.32E-33 T 10-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 10-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 SMART SM01086 765 854 1.1E-35 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 66 3.0E-5 T 10-10-2018 IPR004176 Clp, N-terminal AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 142 5.7E-9 T 10-10-2018 IPR004176 Clp, N-terminal AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 674 692 1.8E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 1.8E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.8E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 707 721 1.8E-42 T 10-10-2018 IPR001270 ClpA/B family GO:0005524 AMQ28_02355 9f52bd1c6a52ce862422a3ca9de9c9c4 860 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 844 1.4E-25 T 10-10-2018 IPR019489 Clp ATPase, C-terminal AMQ28_01565 bc1a72cbfbf4a0f0914001606898ce73 228 Gene3D G3DSA:3.40.50.1820 9 223 5.9E-27 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01565 bc1a72cbfbf4a0f0914001606898ce73 228 SUPERFAMILY SSF53474 5 223 3.57E-23 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01565 bc1a72cbfbf4a0f0914001606898ce73 228 Pfam PF01738 Dienelactone hydrolase family 17 221 4.8E-20 T 10-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMQ28_04515 a83607265500e6168a4d749214358b53 631 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 1.2E-20 T 10-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 425 444 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 7.1E-51 T 10-10-2018 AMQ28_04515 a83607265500e6168a4d749214358b53 631 Pfam PF00361 Proton-conducting membrane transporter 134 413 5.9E-85 T 10-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04515 a83607265500e6168a4d749214358b53 631 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 623 6.1E-199 T 10-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 4.2E-9 T 10-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 4.2E-9 T 10-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 4.2E-9 T 10-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMQ28_04515 a83607265500e6168a4d749214358b53 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 424 446 4.2E-9 T 10-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 SUPERFAMILY SSF56935 32 691 6.8E-82 T 10-10-2018 AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 Pfam PF00593 TonB dependent receptor 290 689 5.4E-37 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 Gene3D G3DSA:2.170.130.10 41 159 2.3E-21 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 Gene3D G3DSA:2.40.170.20 161 691 2.6E-57 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 674 691 - T 10-10-2018 IPR010917 TonB-dependent receptor, conserved site AMQ28_10985 41053135623a9e19386ab36e4658e1db 691 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 148 1.8E-8 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 SMART SM00490 714 806 9.8E-7 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 Pfam PF00271 Helicase conserved C-terminal domain 681 806 2.6E-12 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 Gene3D G3DSA:3.40.50.10810 228 475 3.8E-24 T 10-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 Pfam PF00176 SNF2 family N-terminal domain 223 291 4.7E-7 T 10-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 SMART SM00487 225 415 2.2E-7 T 10-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 SUPERFAMILY SSF52540 277 829 7.81E-33 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05390 41f1036c8c8b35a0ff4de00991fffdf7 1085 Gene3D G3DSA:3.40.50.300 606 832 2.2E-29 T 10-10-2018 AMQ28_05365 4a404aeed9be59c479669c00aa3c0de0 317 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 38 298 2.1E-25 T 10-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system AMQ28_05115 b48e1ec379019313c99fcdb5ca6ae00b 277 Gene3D G3DSA:3.90.70.10 52 207 9.8E-30 T 10-10-2018 AMQ28_05115 b48e1ec379019313c99fcdb5ca6ae00b 277 Pfam PF03412 Peptidase C39 family 63 197 2.2E-15 T 10-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMQ28_04655 c309bdd7af44ff09b393831ebc214cc5 434 SUPERFAMILY SSF103473 9 420 1.96E-83 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04655 c309bdd7af44ff09b393831ebc214cc5 434 Gene3D G3DSA:1.20.1250.20 2 430 3.6E-76 T 10-10-2018 AMQ28_04655 c309bdd7af44ff09b393831ebc214cc5 434 Pfam PF07690 Major Facilitator Superfamily 20 382 1.2E-45 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_03475 064c73046237a9676f3a918d06259293 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 217 1.3E-71 T 10-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AMQ28_03475 064c73046237a9676f3a918d06259293 227 SUPERFAMILY SSF161098 3 214 1.06E-46 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_03475 064c73046237a9676f3a918d06259293 227 Gene3D G3DSA:1.10.3720.10 1 222 6.6E-56 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_03475 064c73046237a9676f3a918d06259293 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 5.1E-16 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 314 9.8E-121 T 10-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 197 313 2.5E-28 T 10-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 10-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 48.092 T 10-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 SUPERFAMILY SSF53271 69 306 3.45E-64 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 5.2E-49 T 10-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 SMART SM01400 4 121 4.7E-77 T 10-10-2018 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 Gene3D G3DSA:3.40.50.2020 7 302 8.1E-130 T 10-10-2018 AMQ28_12080 a0684025836f2955d3bc6875d2c10656 317 Gene3D G3DSA:3.40.50.2020 148 290 8.1E-130 T 10-10-2018 AMQ28_02685 7504f1b0d492600875488ba7af269248 720 Gene3D G3DSA:1.20.1250.20 17 401 1.5E-11 T 10-10-2018 AMQ28_02685 7504f1b0d492600875488ba7af269248 720 Gene3D G3DSA:2.60.40.10 482 590 1.5E-6 T 10-10-2018 IPR013783 Immunoglobulin-like fold AMQ28_02685 7504f1b0d492600875488ba7af269248 720 Pfam PF07690 Major Facilitator Superfamily 25 411 2.4E-12 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_02685 7504f1b0d492600875488ba7af269248 720 SUPERFAMILY SSF103473 15 410 1.57E-18 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_02685 7504f1b0d492600875488ba7af269248 720 SUPERFAMILY SSF103473 616 709 8.5E-5 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_13140 01af46d1b7e39f8a8555da08e797c5f6 154 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 101 7.3E-38 T 10-10-2018 IPR018738 Protein of unknown function DUF2280 AMQ28_10015 ccc208f64bcdcfe963684e3257159e6f 431 SUPERFAMILY SSF56112 93 305 3.67E-22 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_10015 ccc208f64bcdcfe963684e3257159e6f 431 Pfam PF03109 ABC1 family 110 228 1.5E-32 T 10-10-2018 IPR004147 UbiB domain AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 Gene3D G3DSA:3.30.160.390 10 97 4.1E-22 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 Gene3D G3DSA:1.10.150.130 104 218 4.5E-26 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 Pfam PF00589 Phage integrase family 218 378 1.4E-24 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 Gene3D G3DSA:1.10.443.10 219 401 9.2E-20 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 Pfam PF13356 Arm DNA-binding domain 11 96 1.8E-16 T 10-10-2018 IPR025166 Integrase, DNA-binding domain AMQ28_04250 556ae2f38d39ba0b0566e77d3463719f 409 SUPERFAMILY SSF56349 108 388 5.0E-57 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 Pfam PF03466 LysR substrate binding domain 91 295 9.6E-39 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 Gene3D G3DSA:3.40.190.10 95 294 3.4E-51 T 10-10-2018 AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 SUPERFAMILY SSF53850 92 298 1.63E-29 T 10-10-2018 AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 Gene3D G3DSA:1.10.10.10 3 88 1.9E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.9E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 Gene3D G3DSA:3.40.190.10 165 265 3.4E-51 T 10-10-2018 AMQ28_03840 82a7cd90dc93888baf97f0753a4f8077 301 SUPERFAMILY SSF46785 5 115 4.13E-18 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_09625 ca9dfe20d6bedf2d2d7b3a160dde45a2 93 Gene3D G3DSA:1.20.1510.10 5 76 7.2E-11 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_09625 ca9dfe20d6bedf2d2d7b3a160dde45a2 93 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 93 1.2E-26 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMQ28_09625 ca9dfe20d6bedf2d2d7b3a160dde45a2 93 Pfam PF01545 Cation efflux family 12 76 6.5E-14 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMQ28_09625 ca9dfe20d6bedf2d2d7b3a160dde45a2 93 SUPERFAMILY SSF161111 12 77 3.27E-17 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_06395 f6a23e7ea572316093ba58f4a114ffcc 85 SUPERFAMILY SSF64307 7 85 2.49E-20 T 10-10-2018 IPR036868 TusA-like domain superfamily AMQ28_06395 f6a23e7ea572316093ba58f4a114ffcc 85 Pfam PF01206 Sulfurtransferase TusA 11 84 9.0E-22 T 10-10-2018 IPR001455 TusA-like domain AMQ28_06395 f6a23e7ea572316093ba58f4a114ffcc 85 Gene3D G3DSA:3.30.110.40 3 85 7.1E-25 T 10-10-2018 IPR036868 TusA-like domain superfamily AMQ28_06395 f6a23e7ea572316093ba58f4a114ffcc 85 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 10-10-2018 IPR001455 TusA-like domain AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 188 7.6E-9 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 13 221 1.9E-51 T 10-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 Gene3D G3DSA:1.10.150.240 24 94 1.6E-58 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 SUPERFAMILY SSF56784 8 221 1.73E-54 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 Gene3D G3DSA:3.40.50.1000 12 216 1.6E-58 T 10-10-2018 IPR023214 HAD superfamily AMQ28_09360 457923b19c3e9de28d6ff03fdc05d97e 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 195 5.0E-34 T 10-10-2018 AMQ28_12880 f2936e530077fa98e2c9bfb41eefa026 202 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 107 198 2.9E-42 T 10-10-2018 IPR012997 Rare lipoprotein A AMQ28_12880 f2936e530077fa98e2c9bfb41eefa026 202 Pfam PF03330 Lytic transglycolase 105 193 4.6E-28 T 10-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMQ28_12880 f2936e530077fa98e2c9bfb41eefa026 202 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 27 197 24.7 T 10-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMQ28_12880 f2936e530077fa98e2c9bfb41eefa026 202 SUPERFAMILY SSF50685 105 198 2.44E-15 T 10-10-2018 IPR036908 RlpA-like domain superfamily AMQ28_12880 f2936e530077fa98e2c9bfb41eefa026 202 Gene3D G3DSA:2.40.40.10 104 198 9.1E-41 T 10-10-2018 IPR036908 RlpA-like domain superfamily AMQ28_04800 862e078d90290ebbd2946c1dd7e269cc 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.214 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_04800 862e078d90290ebbd2946c1dd7e269cc 60 Pfam PF01783 Ribosomal L32p protein family 2 55 2.3E-19 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_04800 862e078d90290ebbd2946c1dd7e269cc 60 SUPERFAMILY SSF57829 2 54 3.72E-17 T 10-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMQ28_04800 862e078d90290ebbd2946c1dd7e269cc 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 53 2.2E-19 T 10-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 Gene3D G3DSA:3.30.2350.10 95 310 1.9E-68 T 10-10-2018 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 SMART SM00363 22 82 2.0E-9 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 SUPERFAMILY SSF55174 21 73 7.33E-9 T 10-10-2018 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 306 2.6E-79 T 10-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 Gene3D G3DSA:3.10.290.10 10 74 1.6E-17 T 10-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 Pfam PF01479 S4 domain 22 68 4.5E-9 T 10-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 Pfam PF00849 RNA pseudouridylate synthase 104 248 8.5E-30 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06240 c03838b0d401bbd48128156593da88f9 312 SUPERFAMILY SSF55120 95 307 3.2E-57 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 20 318 1.2E-43 T 10-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 Pfam PF06144 DNA polymerase III, delta subunit 20 181 2.1E-14 T 10-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 SUPERFAMILY SSF48019 208 323 1.28E-20 T 10-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 Gene3D G3DSA:1.20.272.10 210 328 6.3E-18 T 10-10-2018 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 Gene3D G3DSA:3.40.50.300 5 134 9.8E-25 T 10-10-2018 AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 SUPERFAMILY SSF52540 5 206 6.38E-25 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05855 7f2137eb8a0aeb11d95fd8ee644d311b 329 Gene3D G3DSA:1.10.8.60 143 209 1.6E-7 T 10-10-2018 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 PIRSF PIRSF004692 2 330 3.1E-132 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 SMART SM00116 215 263 0.0047 T 10-10-2018 IPR000644 CBS domain AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 SMART SM00116 281 329 1.5E-5 T 10-10-2018 IPR000644 CBS domain AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 Pfam PF00571 CBS domain 206 263 3.0E-6 T 10-10-2018 IPR000644 CBS domain AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 Pfam PF00571 CBS domain 274 327 3.0E-11 T 10-10-2018 IPR000644 CBS domain AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 SUPERFAMILY SSF53697 12 327 7.56E-66 T 10-10-2018 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 Gene3D G3DSA:3.10.580.10 201 327 7.8E-43 T 10-10-2018 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 Pfam PF01380 SIS domain 46 177 3.3E-24 T 10-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 319 2.6E-103 T 10-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMQ28_13630 4cca5a48045b8195bf12e61ecfba6e7c 330 Gene3D G3DSA:3.40.50.10490 11 200 2.8E-57 T 10-10-2018 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 Gene3D G3DSA:3.40.1380.10 61 208 2.8E-101 T 10-10-2018 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 Gene3D G3DSA:1.10.287.80 6 285 2.8E-101 T 10-10-2018 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 SUPERFAMILY SSF52943 2 289 3.01E-91 T 10-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 35.727 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 275 288 - T 10-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 Pfam PF00231 ATP synthase 3 288 2.2E-92 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 4.4E-33 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 4.4E-33 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 4.4E-33 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 4.4E-33 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_07115 951d8664669a20cb4f40adf3a4c80c27 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 2.9E-103 T 10-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMQ28_06950 2d7f98d4869ea89d1f6cb8cf13c38eab 206 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 22 197 2.7E-58 T 10-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMQ28_06950 2d7f98d4869ea89d1f6cb8cf13c38eab 206 Pfam PF03641 Possible lysine decarboxylase 65 194 8.0E-41 T 10-10-2018 IPR031100 LOG family AMQ28_06950 2d7f98d4869ea89d1f6cb8cf13c38eab 206 Gene3D G3DSA:3.40.50.450 13 205 5.6E-71 T 10-10-2018 AMQ28_06950 2d7f98d4869ea89d1f6cb8cf13c38eab 206 SUPERFAMILY SSF102405 19 197 1.98E-60 T 10-10-2018 AMQ28_08460 0aaf272251cfa063080eac3e01d58a4c 203 Gene3D G3DSA:3.30.70.1070 124 203 3.8E-15 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMQ28_08460 0aaf272251cfa063080eac3e01d58a4c 203 SUPERFAMILY SSF110997 128 202 2.62E-15 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMQ28_08460 0aaf272251cfa063080eac3e01d58a4c 203 Pfam PF05036 Sporulation related domain 130 202 6.7E-16 T 10-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 SUPERFAMILY SSF46785 4 82 4.46E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 Gene3D G3DSA:3.40.190.10 88 290 4.0E-55 T 10-10-2018 AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 1.3E-10 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 Pfam PF03466 LysR substrate binding domain 94 291 1.3E-19 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 Gene3D G3DSA:3.40.190.10 168 266 4.0E-55 T 10-10-2018 AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 Gene3D G3DSA:1.10.10.10 1 84 1.3E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00565 cba07aeca931176f66bfa39e7d7bf4a9 311 SUPERFAMILY SSF53850 88 293 1.86E-38 T 10-10-2018 AMQ28_00260 3cce4f5b735eb7bf551a869aac85b845 296 Pfam PF01925 Sulfite exporter TauE/SafE 7 268 4.6E-48 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 Gene3D G3DSA:1.10.150.240 16 84 1.0E-51 T 10-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 184 1.5E-12 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 81 179 8.2E-11 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 184 3.5E-36 T 10-10-2018 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.8E-6 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.8E-6 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.8E-6 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 1.8E-6 T 10-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 SUPERFAMILY SSF56784 1 219 2.53E-55 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_08330 cda495225a4f626ab502cd8431a5d45f 232 Gene3D G3DSA:3.40.50.1000 4 192 1.0E-51 T 10-10-2018 IPR023214 HAD superfamily AMQ28_07565 2f1ef6458cdc48bada9e193f4bf6822c 985 Pfam PF00589 Phage integrase family 500 644 4.9E-8 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_07565 2f1ef6458cdc48bada9e193f4bf6822c 985 SUPERFAMILY SSF56349 508 644 1.24E-9 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 SUPERFAMILY SSF50182 112 181 9.15E-12 T 10-10-2018 IPR010920 LSM domain superfamily AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 Gene3D G3DSA:2.30.30.60 127 180 2.6E-8 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 SUPERFAMILY SSF82861 26 109 6.02E-8 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 SUPERFAMILY SSF82689 183 275 1.7E-20 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 Gene3D G3DSA:3.30.70.100 182 275 1.8E-19 T 10-10-2018 AMQ28_05225 442cb05a69197e8111419790a3f8d9da 308 Pfam PF00924 Mechanosensitive ion channel 70 270 3.5E-41 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMQ28_12010 b55a6ba39b422c355760bfefc62a952b 465 PIRSF PIRSF006060 3 463 2.7E-65 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_12010 b55a6ba39b422c355760bfefc62a952b 465 Pfam PF00324 Amino acid permease 21 387 1.4E-37 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_12010 b55a6ba39b422c355760bfefc62a952b 465 Gene3D G3DSA:1.20.1740.10 12 461 4.8E-73 T 10-10-2018 AMQ28_10165 383f4a17d05178dee2f9c4fa9c8370e6 527 SUPERFAMILY SSF52540 5 382 5.35E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_10165 383f4a17d05178dee2f9c4fa9c8370e6 527 Pfam PF05872 Bacterial protein of unknown function (DUF853) 10 526 1.1E-228 T 10-10-2018 IPR033186 Helicase HerA-like C-terminal AMQ28_10165 383f4a17d05178dee2f9c4fa9c8370e6 527 Gene3D G3DSA:3.40.50.300 4 153 3.6E-11 T 10-10-2018 AMQ28_10165 383f4a17d05178dee2f9c4fa9c8370e6 527 Gene3D G3DSA:3.40.50.300 202 379 2.5E-21 T 10-10-2018 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 360 370 - T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 17 34 - T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 Pfam PF01266 FAD dependent oxidoreductase 13 330 2.1E-44 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 Gene3D G3DSA:1.10.8.870 400 468 6.1E-19 T 10-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 Gene3D G3DSA:3.30.9.10 90 327 2.5E-134 T 10-10-2018 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 Gene3D G3DSA:3.50.50.60 13 373 2.5E-134 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 SUPERFAMILY SSF51905 10 300 6.26E-32 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 25 35 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 12 24 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 41 53 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 355 367 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 86 98 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 320 326 4.3E-29 T 10-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_12330 6615974ec556c0aa6b80ac45f67c0fb8 510 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 389 484 1.9E-10 T 10-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMQ28_02155 7bcad16d0107463da473b9dcd70ceb49 290 Pfam PF05673 Protein of unknown function (DUF815) 36 284 1.6E-102 T 10-10-2018 IPR008533 Domain of unknown function DUF815 AMQ28_02155 7bcad16d0107463da473b9dcd70ceb49 290 SUPERFAMILY SSF52540 48 191 4.62E-24 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02155 7bcad16d0107463da473b9dcd70ceb49 290 Gene3D G3DSA:3.40.50.300 39 221 1.9E-10 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 SMART SM00863 665 714 1.6E-19 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Gene3D G3DSA:3.30.980.10 574 715 1.7E-48 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 318 331 1.3E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 1.3E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 1.3E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 1.3E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 PRINTS PR00980 Alanyl-tRNA synthetase signature 294 310 1.3E-31 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Gene3D G3DSA:3.30.54.20 636 695 1.7E-48 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Gene3D G3DSA:2.40.30.130 475 564 3.7E-10 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Pfam PF01411 tRNA synthetases class II (A) 5 565 4.7E-220 T 10-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 665 714 3.9E-17 T 10-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 SUPERFAMILY SSF50447 466 564 2.12E-17 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 SUPERFAMILY SSF55186 565 726 1.29E-46 T 10-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Pfam PF02272 DHHA1 domain 755 889 4.9E-23 T 10-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 871 0.0 T 10-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Gene3D G3DSA:3.10.310.40 781 890 5.3E-26 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Gene3D G3DSA:3.30.930.10 1 250 7.1E-119 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 SUPERFAMILY SSF55681 2 253 4.47E-105 T 10-10-2018 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 892 190.012 T 10-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMQ28_02405 b7135fe6ccf3b19e59a0a92d51b189f2 892 SUPERFAMILY SSF101353 254 475 4.32E-60 T 10-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 Gene3D G3DSA:3.30.1330.60 216 337 5.3E-44 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 Gene3D G3DSA:2.40.160.20 14 190 9.7E-19 T 10-10-2018 AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 Pfam PF00691 OmpA family 231 327 4.9E-23 T 10-10-2018 IPR006665 OmpA-like domain AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 SUPERFAMILY SSF103088 207 331 8.76E-34 T 10-10-2018 IPR036737 OmpA-like domain superfamily AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 PRINTS PR01021 OMPA domain signature 277 293 4.8E-10 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 PRINTS PR01021 OMPA domain signature 262 277 4.8E-10 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 PRINTS PR01021 OMPA domain signature 232 254 4.8E-10 T 10-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 Pfam PF13505 Outer membrane protein beta-barrel domain 7 188 5.1E-12 T 10-10-2018 IPR027385 Outer membrane protein beta-barrel AMQ28_04680 e6644008193cce9a6e3e2e46e526842d 348 SUPERFAMILY SSF56925 30 195 7.59E-18 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMQ28_05965 dfa4c94503c0b6368f2f9d5c53316404 92 SUPERFAMILY SSF54928 2 82 7.93E-24 T 10-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 AMQ28_05965 dfa4c94503c0b6368f2f9d5c53316404 92 SMART SM00360 2 75 3.6E-22 T 10-10-2018 IPR000504 RNA recognition motif domain GO:0003676 AMQ28_05965 dfa4c94503c0b6368f2f9d5c53316404 92 Gene3D G3DSA:3.30.70.330 1 88 2.5E-24 T 10-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMQ28_05965 dfa4c94503c0b6368f2f9d5c53316404 92 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 8.7E-19 T 10-10-2018 IPR000504 RNA recognition motif domain GO:0003676 AMQ28_10615 60d684e40d25aa5297924b174d67e02e 303 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 282 8.3E-61 T 10-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 AMQ28_02715 8bbf9321bc5696796f52f98fd0ff84b7 256 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 256 35.236 T 10-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMQ28_02715 8bbf9321bc5696796f52f98fd0ff84b7 256 Pfam PF01975 Survival protein SurE 3 186 1.4E-54 T 10-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMQ28_02715 8bbf9321bc5696796f52f98fd0ff84b7 256 Gene3D G3DSA:3.40.1210.10 1 256 5.3E-81 T 10-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMQ28_02715 8bbf9321bc5696796f52f98fd0ff84b7 256 SUPERFAMILY SSF64167 2 254 3.27E-75 T 10-10-2018 AMQ28_02715 8bbf9321bc5696796f52f98fd0ff84b7 256 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 2 242 4.6E-66 T 10-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 SUPERFAMILY SSF50447 2 211 7.77E-79 T 10-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 Gene3D G3DSA:2.40.50.620 34 92 6.9E-14 T 10-10-2018 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 Pfam PF00297 Ribosomal protein L3 62 185 1.5E-14 T 10-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.924 T 10-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 Gene3D G3DSA:2.40.30.10 132 212 3.1E-14 T 10-10-2018 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 207 8.0E-87 T 10-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_10185 096eb37c344ac6d5081ba334a3e42461 212 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 10-10-2018 IPR019926 Ribosomal protein L3, conserved site AMQ28_04700 f534b79a94bfc5a57b1080a999aeb23f 161 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 155 2.0E-30 T 10-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMQ28_02145 3c2b2d7b56180ef5735480c2d1b504db 280 SUPERFAMILY SSF56112 122 266 6.31E-27 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_02145 3c2b2d7b56180ef5735480c2d1b504db 280 SMART SM00220 32 276 2.4E-6 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMQ28_02145 3c2b2d7b56180ef5735480c2d1b504db 280 Pfam PF00069 Protein kinase domain 118 264 3.1E-20 T 10-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMQ28_02145 3c2b2d7b56180ef5735480c2d1b504db 280 Gene3D G3DSA:1.10.510.10 112 279 2.3E-26 T 10-10-2018 AMQ28_14195 c2eb5974b1c36c299851637f053a94a1 137 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 31 131 28.169 T 10-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMQ28_14195 c2eb5974b1c36c299851637f053a94a1 137 SUPERFAMILY SSF54736 51 135 2.62E-31 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMQ28_14195 c2eb5974b1c36c299851637f053a94a1 137 Gene3D G3DSA:3.30.1390.10 32 137 1.5E-40 T 10-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMQ28_14195 c2eb5974b1c36c299851637f053a94a1 137 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 53 131 5.2E-33 T 10-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AMQ28_02465 c84af3b9a7525376b927de8507b47d62 210 SUPERFAMILY SSF53474 3 207 1.29E-32 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_02465 c84af3b9a7525376b927de8507b47d62 210 Pfam PF12146 Serine aminopeptidase, S33 50 134 2.1E-6 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_02465 c84af3b9a7525376b927de8507b47d62 210 Gene3D G3DSA:3.40.50.1820 3 209 7.5E-38 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12030 b389deda723a11f1afb96bf765986e2a 97 SUPERFAMILY SSF117991 11 97 2.35E-22 T 10-10-2018 IPR027471 YbeD-like domain superfamily AMQ28_12030 b389deda723a11f1afb96bf765986e2a 97 Gene3D G3DSA:3.30.70.260 10 97 2.0E-22 T 10-10-2018 AMQ28_12030 b389deda723a11f1afb96bf765986e2a 97 Pfam PF04359 Protein of unknown function (DUF493) 15 97 5.2E-24 T 10-10-2018 IPR007454 Uncharacterised protein family UPF0250 AMQ28_11455 949ab435e62428fb180346102a767a67 272 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 91 5.2E-16 T 10-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMQ28_11455 949ab435e62428fb180346102a767a67 272 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 11 240 39.678 T 10-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMQ28_11455 949ab435e62428fb180346102a767a67 272 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 114 234 1.0E-37 T 10-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMQ28_11455 949ab435e62428fb180346102a767a67 272 SUPERFAMILY SSF55729 84 242 2.36E-27 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_11455 949ab435e62428fb180346102a767a67 272 PIRSF PIRSF037208 4 253 4.6E-97 T 10-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 506 2.5E-135 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PIRSF PIRSF002869 1 511 5.7E-157 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 474 19.741 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 Pfam PF03023 MviN-like protein 30 472 1.7E-132 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 416 433 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 52 68 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 133 157 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 357 376 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 33 52 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 157 178 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_08375 0deb83e382b6eea2a32f6bf6d9377a36 513 PRINTS PR01806 Virulence factor MviN signature 259 285 1.0E-69 T 10-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMQ28_07160 d116d191372a92306057249857fadb2f 263 Gene3D G3DSA:3.40.50.300 5 244 5.5E-55 T 10-10-2018 AMQ28_07160 d116d191372a92306057249857fadb2f 263 SMART SM00382 39 206 4.4E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_07160 d116d191372a92306057249857fadb2f 263 SUPERFAMILY SSF52540 9 225 2.03E-52 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07160 d116d191372a92306057249857fadb2f 263 Pfam PF00005 ABC transporter 30 157 6.1E-28 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_07160 d116d191372a92306057249857fadb2f 263 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_04270 9a3d4b8b5dc8f38c02e2086d200c5517 71 Pfam PF14090 Helix-turn-helix domain 7 67 1.8E-14 T 10-10-2018 AMQ28_11320 3bce158faca65d5383d1a53c0210800d 369 SUPERFAMILY SSF51395 2 360 2.69E-109 T 10-10-2018 AMQ28_11320 3bce158faca65d5383d1a53c0210800d 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 340 4.8E-69 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_11320 3bce158faca65d5383d1a53c0210800d 369 Gene3D G3DSA:3.20.20.70 2 358 5.9E-116 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_13500 6b6af10b446e3739fd44ad0c17eb1a4f 135 SUPERFAMILY SSF82784 6 133 7.46E-33 T 10-10-2018 IPR036102 OsmC/Ohr superfamily AMQ28_13500 6b6af10b446e3739fd44ad0c17eb1a4f 135 Gene3D G3DSA:3.30.300.20 3 135 3.5E-35 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_13500 6b6af10b446e3739fd44ad0c17eb1a4f 135 Pfam PF02566 OsmC-like protein 36 131 1.3E-18 T 10-10-2018 IPR003718 OsmC/Ohr family AMQ28_01905 4b73350de4e6e12ed13a1f7cf0451242 419 SUPERFAMILY SSF102114 44 260 6.02E-15 T 10-10-2018 AMQ28_01905 4b73350de4e6e12ed13a1f7cf0451242 419 Gene3D G3DSA:3.20.20.70 27 275 5.7E-11 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01905 4b73350de4e6e12ed13a1f7cf0451242 419 SUPERFAMILY SSF47781 302 381 4.22E-14 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_01905 4b73350de4e6e12ed13a1f7cf0451242 419 Gene3D G3DSA:1.10.150.320 311 373 2.0E-6 T 10-10-2018 AMQ28_01905 4b73350de4e6e12ed13a1f7cf0451242 419 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 5 412 1.0E-202 T 10-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative AMQ28_12870 f6a2f9ade260e1b38ea7f4dd5b763ae0 176 Pfam PF11948 Protein of unknown function (DUF3465) 61 176 8.6E-52 T 10-10-2018 IPR021856 Protein of unknown function DUF3465 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 130 153 - T 10-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 184 29.003 T 10-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 186 3.0E-69 T 10-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 SUPERFAMILY SSF53328 3 197 1.14E-60 T 10-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 Gene3D G3DSA:3.40.50.170 1 206 1.6E-73 T 10-10-2018 AMQ28_03205 5244486b9e6efa1301a402625b08954c 209 Pfam PF00551 Formyl transferase 3 178 2.8E-57 T 10-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMQ28_01435 4a341f9f313d391957047cf5f5f9ce91 259 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 4.8E-12 T 10-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMQ28_01435 4a341f9f313d391957047cf5f5f9ce91 259 SMART SM00460 153 215 5.5E-16 T 10-10-2018 IPR002931 Transglutaminase-like AMQ28_01435 4a341f9f313d391957047cf5f5f9ce91 259 SUPERFAMILY SSF54001 97 247 8.54E-39 T 10-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMQ28_01435 4a341f9f313d391957047cf5f5f9ce91 259 Gene3D G3DSA:3.10.620.30 65 249 5.0E-42 T 10-10-2018 AMQ28_01435 4a341f9f313d391957047cf5f5f9ce91 259 Pfam PF01841 Transglutaminase-like superfamily 130 212 1.2E-18 T 10-10-2018 IPR002931 Transglutaminase-like AMQ28_04015 c660885265161011f0b3d8c2cfa72ebf 170 Gene3D G3DSA:3.10.129.10 9 161 5.9E-57 T 10-10-2018 AMQ28_04015 c660885265161011f0b3d8c2cfa72ebf 170 SUPERFAMILY SSF54637 13 158 1.25E-44 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_04015 c660885265161011f0b3d8c2cfa72ebf 170 Pfam PF03061 Thioesterase superfamily 32 103 7.7E-19 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 Pfam PF00814 Glycoprotease family 33 141 2.8E-24 T 10-10-2018 IPR000905 Gcp-like domain AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 208 4.5E-48 T 10-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 Gene3D G3DSA:3.30.420.40 3 208 6.4E-56 T 10-10-2018 AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 SUPERFAMILY SSF53067 1 103 1.68E-23 T 10-10-2018 AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 SUPERFAMILY SSF53067 111 206 7.25E-13 T 10-10-2018 AMQ28_05075 a488c3b34255d118f24cf09093cc4708 221 Gene3D G3DSA:3.30.420.40 95 177 6.4E-56 T 10-10-2018 AMQ28_08750 f3ad520a4eeb1b20150de946218df940 368 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 8 357 8.4E-185 T 10-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 AMQ28_08750 f3ad520a4eeb1b20150de946218df940 368 Pfam PF00296 Luciferase-like monooxygenase 9 328 6.0E-73 T 10-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMQ28_08750 f3ad520a4eeb1b20150de946218df940 368 Gene3D G3DSA:3.20.20.30 4 361 2.7E-110 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_08750 f3ad520a4eeb1b20150de946218df940 368 SUPERFAMILY SSF51679 5 355 1.01E-90 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_02020 9cb6879444ef227b794daa36ccbc20b1 364 Pfam PF00487 Fatty acid desaturase 76 340 5.8E-28 T 10-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMQ28_04445 c989934008bdd7ed18a73dfe598fa3b8 550 SUPERFAMILY SSF103473 29 444 1.31E-21 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04445 c989934008bdd7ed18a73dfe598fa3b8 550 Gene3D G3DSA:1.20.1250.20 33 227 4.0E-17 T 10-10-2018 AMQ28_04445 c989934008bdd7ed18a73dfe598fa3b8 550 Pfam PF07690 Major Facilitator Superfamily 45 439 1.0E-14 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_13915 ecbc3657527c06a40f1c54c050971621 221 SUPERFAMILY SSF51735 4 205 1.22E-33 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_13915 ecbc3657527c06a40f1c54c050971621 221 Pfam PF13460 NAD(P)H-binding 12 202 1.8E-7 T 10-10-2018 IPR016040 NAD(P)-binding domain AMQ28_13915 ecbc3657527c06a40f1c54c050971621 221 Gene3D G3DSA:3.40.50.720 1 221 1.6E-50 T 10-10-2018 AMQ28_09845 a317b32aab629bc85293bc0af381d85e 148 SUPERFAMILY SSF54523 10 120 5.57E-14 T 10-10-2018 AMQ28_09845 a317b32aab629bc85293bc0af381d85e 148 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 7.8E-10 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09845 a317b32aab629bc85293bc0af381d85e 148 Gene3D G3DSA:3.30.700.10 10 148 3.7E-13 T 10-10-2018 AMQ28_09845 a317b32aab629bc85293bc0af381d85e 148 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_09845 a317b32aab629bc85293bc0af381d85e 148 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 8.1E-9 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_03760 71516613d213bfbdd301e99e88f5ae26 206 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 109 143 1.4E-9 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_03760 71516613d213bfbdd301e99e88f5ae26 206 Gene3D G3DSA:2.160.10.10 6 205 4.1E-58 T 10-10-2018 AMQ28_03760 71516613d213bfbdd301e99e88f5ae26 206 SUPERFAMILY SSF51161 64 202 4.85E-39 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_03760 71516613d213bfbdd301e99e88f5ae26 206 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 10-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 Pfam PF00762 Ferrochelatase 9 326 1.5E-98 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 Hamap MF_00323 Ferrochelatase [hemH]. 7 328 34.199 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 Gene3D G3DSA:3.40.50.1400 171 309 3.7E-90 T 10-10-2018 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 SUPERFAMILY SSF53800 7 332 1.23E-91 T 10-10-2018 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 TIGRFAM TIGR00109 hemH: ferrochelatase 6 327 4.3E-85 T 10-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 Gene3D G3DSA:3.40.50.1400 8 328 3.7E-90 T 10-10-2018 AMQ28_06365 6279ea6936ca04bb4f7eb489f58cbc7c 337 ProSitePatterns PS00534 Ferrochelatase signature. 197 216 - T 10-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 SUPERFAMILY SSF53850 90 298 6.64E-40 T 10-10-2018 AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 Pfam PF03466 LysR substrate binding domain 90 296 2.0E-38 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 Gene3D G3DSA:3.40.190.290 93 296 3.1E-56 T 10-10-2018 AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 Gene3D G3DSA:1.10.10.10 3 91 4.5E-22 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 SUPERFAMILY SSF46785 4 86 1.31E-16 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01125 57042e76b8f72a109ae2163d37ba61b4 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 6.8E-13 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_05025 7abce84a953c78973129ea1c8796c9d9 105 SUPERFAMILY SSF103481 5 104 3.27E-21 T 10-10-2018 AMQ28_05025 7abce84a953c78973129ea1c8796c9d9 105 Gene3D G3DSA:1.10.3730.20 1 105 1.7E-32 T 10-10-2018 AMQ28_05025 7abce84a953c78973129ea1c8796c9d9 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 5.0E-29 T 10-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 6.7E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 6.7E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 6.7E-19 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 10-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 Gene3D G3DSA:4.10.520.10 1 90 5.8E-38 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 SMART SM00411 1 90 6.5E-46 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 1.4E-34 T 10-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMQ28_14100 0df128da72c42a87e434f1c2f50929fe 90 SUPERFAMILY SSF47729 1 89 3.39E-33 T 10-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMQ28_08315 d16cab1dfbd6630a90848b188551b7a9 123 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 67 121 2.0E-9 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_08315 d16cab1dfbd6630a90848b188551b7a9 123 Pfam PF11776 Nickel/cobalt transporter regulator 70 120 1.3E-14 T 10-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMQ28_08315 d16cab1dfbd6630a90848b188551b7a9 123 Gene3D G3DSA:3.10.450.160 47 123 1.3E-14 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 303 318 1.9E-19 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.9E-19 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 318 334 1.9E-19 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.9E-19 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 1.9E-19 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 Gene3D G3DSA:3.50.50.60 7 371 9.9E-100 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 Gene3D G3DSA:3.30.9.30 40 379 9.9E-100 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 SUPERFAMILY SSF51905 5 404 4.61E-51 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 SUPERFAMILY SSF54373 182 292 1.61E-14 T 10-10-2018 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 TIGRFAM TIGR03219 salicylate_mono: salicylate 1-monooxygenase 5 416 4.7E-182 T 10-10-2018 IPR017631 Salicylate 1-monooxygenase KEGG: 00621+1.14.13.1|KEGG: 00624+1.14.13.1|KEGG: 00626+1.14.13.1|MetaCyc: PWY-6107|MetaCyc: PWY-6183|MetaCyc: PWY-6184 AMQ28_00970 a45c853a3080965f9c323e9133f9373e 429 Pfam PF01494 FAD binding domain 5 366 1.1E-17 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 AMQ28_08475 39907f32df5895e75023a2522650f4de 435 Pfam PF04286 Protein of unknown function (DUF445) 54 430 4.0E-71 T 10-10-2018 IPR007383 Protein of unknown function DUF445 AMQ28_07205 32a74517e0e3ffc324903c248b1872ef 230 SUPERFAMILY SSF46689 29 109 1.13E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07205 32a74517e0e3ffc324903c248b1872ef 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 83 1.0E-5 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07205 32a74517e0e3ffc324903c248b1872ef 230 Gene3D G3DSA:1.10.10.60 7 81 5.5E-12 T 10-10-2018 AMQ28_07205 32a74517e0e3ffc324903c248b1872ef 230 Gene3D G3DSA:1.10.357.10 82 218 2.1E-10 T 10-10-2018 AMQ28_12845 eba23afb443aac476ed0b60217fc38cf 144 Gene3D G3DSA:3.10.129.10 9 144 3.3E-35 T 10-10-2018 AMQ28_12845 eba23afb443aac476ed0b60217fc38cf 144 SUPERFAMILY SSF54637 5 140 9.07E-35 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_12845 eba23afb443aac476ed0b60217fc38cf 144 Pfam PF03061 Thioesterase superfamily 56 131 1.7E-8 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_12845 eba23afb443aac476ed0b60217fc38cf 144 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 30 140 1.9E-21 T 10-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 Pfam PF00575 S1 RNA binding domain 36 116 4.5E-10 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 Hamap MF_00970 Ribonuclease E [rne]. 1 1133 32.485 T 10-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 SMART SM00316 37 117 7.3E-9 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 Gene3D G3DSA:3.40.1260.20 399 505 8.5E-31 T 10-10-2018 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 Gene3D G3DSA:2.40.50.140 31 123 3.8E-28 T 10-10-2018 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 Pfam PF10150 Ribonuclease E/G family 119 388 1.0E-93 T 10-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 422 1.4E-157 T 10-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMQ28_06245 ccb646ec7009500d977a24a695c83875 1138 SUPERFAMILY SSF50249 40 123 2.11E-16 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_04920 223c427202093ca66762f1afb793d0ab 382 SUPERFAMILY SSF52540 46 109 9.04E-8 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04920 223c427202093ca66762f1afb793d0ab 382 Pfam PF00271 Helicase conserved C-terminal domain 50 107 2.0E-5 T 10-10-2018 IPR001650 Helicase, C-terminal AMQ28_04920 223c427202093ca66762f1afb793d0ab 382 Gene3D G3DSA:3.40.50.300 20 147 1.4E-35 T 10-10-2018 AMQ28_03645 8756fc99796f41045e1e6cbe282d4738 194 Pfam PF13430 Domain of unknown function (DUF4112) 20 119 3.4E-22 T 10-10-2018 IPR025187 Protein of unknown function DUF4112 AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 SMART SM00316 37 113 4.6E-13 T 10-10-2018 IPR022967 RNA-binding domain, S1 AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 Gene3D G3DSA:2.40.50.140 31 118 2.0E-25 T 10-10-2018 AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 420 1.5E-151 T 10-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 Pfam PF10150 Ribonuclease E/G family 115 387 1.0E-101 T 10-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 SUPERFAMILY SSF50249 39 118 9.15E-19 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_11720 f7861a5111ed87ed0691d0deaf92d829 484 Pfam PF00575 S1 RNA binding domain 38 111 2.2E-5 T 10-10-2018 IPR003029 S1 domain GO:0003676 AMQ28_00250 cc65fb555bf48346b43c8ff3093a25d2 174 Gene3D G3DSA:3.90.190.10 2 155 5.4E-27 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_00250 cc65fb555bf48346b43c8ff3093a25d2 174 SUPERFAMILY SSF52799 8 135 2.14E-13 T 10-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMQ28_00925 3e31fcc653b57d738a0005ee5fa88226 282 Gene3D G3DSA:3.60.130.10 1 282 7.1E-81 T 10-10-2018 AMQ28_00925 3e31fcc653b57d738a0005ee5fa88226 282 SUPERFAMILY SSF51197 1 281 1.24E-84 T 10-10-2018 AMQ28_00925 3e31fcc653b57d738a0005ee5fa88226 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 3 274 1.4E-59 T 10-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AMQ28_13220 288b5edc5e61c9bbb489b4d175bf367c 82 Gene3D G3DSA:1.10.1220.10 1 48 1.0E-16 T 10-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMQ28_13220 288b5edc5e61c9bbb489b4d175bf367c 82 Pfam PF03869 Arc-like DNA binding domain 2 45 1.8E-10 T 10-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMQ28_13220 288b5edc5e61c9bbb489b4d175bf367c 82 SUPERFAMILY SSF47598 3 46 4.82E-11 T 10-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMQ28_03735 e4c5038133624c1ad3580b77fb5be925 157 SUPERFAMILY SSF58113 8 148 8.63E-6 T 10-10-2018 AMQ28_03735 e4c5038133624c1ad3580b77fb5be925 157 Gene3D G3DSA:1.20.120.20 2 156 1.0E-5 T 10-10-2018 AMQ28_12620 3104dba79a542ac200aaa27533b3bdae 472 PIRSF PIRSF006060 2 472 6.7E-79 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_12620 3104dba79a542ac200aaa27533b3bdae 472 Gene3D G3DSA:1.20.1740.10 19 472 9.3E-65 T 10-10-2018 AMQ28_12620 3104dba79a542ac200aaa27533b3bdae 472 ProSitePatterns PS00218 Amino acid permeases signature. 52 83 - T 10-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMQ28_12620 3104dba79a542ac200aaa27533b3bdae 472 Pfam PF00324 Amino acid permease 27 442 4.9E-116 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 Gene3D G3DSA:3.40.50.720 282 601 2.1E-114 T 10-10-2018 AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 Gene3D G3DSA:3.40.50.720 145 267 2.7E-27 T 10-10-2018 AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 SUPERFAMILY SSF51735 146 271 1.77E-15 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 Pfam PF13727 CoA-binding domain 69 219 6.7E-8 T 10-10-2018 AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 SUPERFAMILY SSF51735 283 553 1.32E-52 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07700 980f26a7169b43120195d2c6312ec8f6 624 Pfam PF02719 Polysaccharide biosynthesis protein 286 573 5.4E-123 T 10-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Hamap MF_00195 GTPase Der [der]. 2 435 38.048 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Gene3D G3DSA:3.30.300.20 352 434 6.7E-20 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 1.0E-8 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.0E-8 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 432 8.8E-179 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 PIRSF PIRSF006485 1 440 1.0E-174 T 10-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 352 432 5.1E-26 T 10-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Gene3D G3DSA:3.40.50.300 1 161 2.5E-43 T 10-10-2018 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 SUPERFAMILY SSF52540 4 166 4.2E-45 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 SUPERFAMILY SSF52540 137 438 3.01E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Pfam PF01926 50S ribosome-binding GTPase 179 296 6.2E-24 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Pfam PF01926 50S ribosome-binding GTPase 5 119 4.5E-24 T 10-10-2018 IPR006073 GTP binding domain GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 Gene3D G3DSA:3.40.50.300 171 349 1.4E-48 T 10-10-2018 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 152 4.0E-21 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_05740 9c9c6b67da14c985878908a51237c6ba 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 178 335 1.3E-22 T 10-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMQ28_04820 3eab9e0a5546907e24ea3904bf47e87b 243 Gene3D G3DSA:3.40.630.30 31 240 3.6E-46 T 10-10-2018 AMQ28_04820 3eab9e0a5546907e24ea3904bf47e87b 243 SUPERFAMILY SSF55729 48 204 4.64E-29 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_04820 3eab9e0a5546907e24ea3904bf47e87b 243 Pfam PF13302 Acetyltransferase (GNAT) domain 65 180 1.2E-7 T 10-10-2018 IPR000182 GNAT domain AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 PIRSF PIRSF001430 1 255 1.4E-74 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 32.636 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 Gene3D G3DSA:3.30.70.580 1 106 4.1E-33 T 10-10-2018 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 239 5.3E-64 T 10-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 SUPERFAMILY SSF55120 1 260 2.88E-86 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 Gene3D G3DSA:3.30.70.660 107 243 3.4E-47 T 10-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 Pfam PF01416 tRNA pseudouridine synthase 144 246 2.1E-28 T 10-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06050 7918c99e1b6a4a8c3dd286193549525c 265 Pfam PF01416 tRNA pseudouridine synthase 9 104 1.2E-6 T 10-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_06855 39b54c7149c572cfcb46831b03a66f80 430 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 262 268 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_06855 39b54c7149c572cfcb46831b03a66f80 430 SUPERFAMILY SSF53335 24 357 1.16E-36 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_06855 39b54c7149c572cfcb46831b03a66f80 430 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 29 288 1.5E-26 T 10-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 Pfam PF04982 HPP family 54 173 5.9E-37 T 10-10-2018 IPR007065 HPP AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 Gene3D G3DSA:3.10.580.10 201 290 4.1E-10 T 10-10-2018 AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 Pfam PF00571 CBS domain 239 289 2.8E-7 T 10-10-2018 IPR000644 CBS domain AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 Pfam PF00571 CBS domain 305 358 3.1E-9 T 10-10-2018 IPR000644 CBS domain AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 SMART SM00116 312 359 1.2E-7 T 10-10-2018 IPR000644 CBS domain AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 SMART SM00116 244 292 0.2 T 10-10-2018 IPR000644 CBS domain AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 SUPERFAMILY SSF54631 230 358 6.28E-26 T 10-10-2018 AMQ28_06280 8e02afe47e66f44f3344da9b1e12065e 369 Gene3D G3DSA:3.10.580.10 291 364 1.6E-12 T 10-10-2018 AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 Gene3D G3DSA:3.40.50.1000 11 205 1.3E-31 T 10-10-2018 IPR023214 HAD superfamily AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 11 202 2.5E-30 T 10-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 11 193 1.3E-22 T 10-10-2018 AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 Gene3D G3DSA:1.20.1440.100 23 94 1.3E-31 T 10-10-2018 AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 12 190 4.4E-27 T 10-10-2018 AMQ28_02015 5deac0c236d3b45d0eaac0c35b38a5eb 216 SUPERFAMILY SSF56784 7 203 2.51E-22 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 Gene3D G3DSA:3.90.79.10 1 130 6.3E-39 T 10-10-2018 AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 10-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 SUPERFAMILY SSF55811 2 127 1.62E-31 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 Pfam PF00293 NUDIX domain 3 123 2.5E-16 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 PRINTS PR00502 NUDIX hydrolase family signature 34 48 2.6E-6 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMQ28_07330 08ceef4daa15cfa67a86540d650ae296 130 PRINTS PR00502 NUDIX hydrolase family signature 48 63 2.6E-6 T 10-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMQ28_11380 ebe28956b812db12f6506af941500b43 126 Gene3D G3DSA:3.30.70.970 2 123 1.7E-10 T 10-10-2018 IPR036701 RraB-like superfamily AMQ28_11380 ebe28956b812db12f6506af941500b43 126 SUPERFAMILY SSF89946 3 121 1.57E-32 T 10-10-2018 IPR036701 RraB-like superfamily AMQ28_11380 ebe28956b812db12f6506af941500b43 126 Pfam PF06877 Regulator of ribonuclease activity B 10 110 7.1E-28 T 10-10-2018 IPR009671 Regulator of ribonuclease activity B domain AMQ28_06740 ff89960dcd327aee58a4c578f1b9a3d6 398 Pfam PF01098 Cell cycle protein 33 386 2.5E-97 T 10-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_06740 ff89960dcd327aee58a4c578f1b9a3d6 398 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 28 396 36.687 T 10-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_06740 ff89960dcd327aee58a4c578f1b9a3d6 398 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 344 368 - T 10-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_06740 ff89960dcd327aee58a4c578f1b9a3d6 398 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 385 2.1E-120 T 10-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 10-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 SUPERFAMILY SSF51569 6 334 1.34E-134 T 10-10-2018 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 3.2E-55 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 SMART SM01004 10 333 9.6E-225 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 Gene3D G3DSA:3.20.20.70 2 337 1.6E-140 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 330 7.0E-132 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_04405 f408dc776a82a35b5341e7930da73008 337 PIRSF PIRSF001415 2 336 2.1E-139 T 10-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMQ28_10560 9bdc610d1a4e22d88436bd8b589a6fda 298 SUPERFAMILY SSF53474 4 295 1.01E-46 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_10560 9bdc610d1a4e22d88436bd8b589a6fda 298 Gene3D G3DSA:1.10.10.800 141 223 5.9E-42 T 10-10-2018 AMQ28_10560 9bdc610d1a4e22d88436bd8b589a6fda 298 Pfam PF12146 Serine aminopeptidase, S33 31 259 1.1E-15 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_10560 9bdc610d1a4e22d88436bd8b589a6fda 298 Gene3D G3DSA:3.40.50.1820 15 276 5.9E-42 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_10365 009208f40430825468592e323856d103 679 Gene3D G3DSA:1.10.1370.10 140 604 1.1E-236 T 10-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMQ28_10365 009208f40430825468592e323856d103 679 Gene3D G3DSA:1.10.1370.40 12 669 1.1E-236 T 10-10-2018 AMQ28_10365 009208f40430825468592e323856d103 679 SUPERFAMILY SSF55486 9 671 6.11E-180 T 10-10-2018 AMQ28_10365 009208f40430825468592e323856d103 679 Pfam PF01432 Peptidase family M3 221 670 3.2E-144 T 10-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMQ28_10765 e78b127c5e3629f17773b8b11f38a846 206 Gene3D G3DSA:1.25.10.10 21 204 2.2E-16 T 10-10-2018 IPR011989 Armadillo-like helical AMQ28_10765 e78b127c5e3629f17773b8b11f38a846 206 SUPERFAMILY SSF48371 46 199 2.14E-11 T 10-10-2018 IPR016024 Armadillo-type fold AMQ28_04915 c6c3a66330ecccde856f6d2d00ba1604 305 Gene3D G3DSA:3.30.420.10 127 279 1.8E-14 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_04915 c6c3a66330ecccde856f6d2d00ba1604 305 SUPERFAMILY SSF53098 127 291 9.1E-37 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_04915 c6c3a66330ecccde856f6d2d00ba1604 305 Pfam PF00665 Integrase core domain 133 247 4.2E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_04915 c6c3a66330ecccde856f6d2d00ba1604 305 Pfam PF13276 HTH-like domain 57 108 3.3E-18 T 10-10-2018 IPR025948 HTH-like domain AMQ28_06940 e1e2f156ee72cc0fd283242676deaa0b 155 Pfam PF02810 SEC-C motif 135 152 1.1E-7 T 10-10-2018 IPR004027 SEC-C motif AMQ28_06940 e1e2f156ee72cc0fd283242676deaa0b 155 SUPERFAMILY SSF103642 132 154 1.64E-7 T 10-10-2018 AMQ28_06940 e1e2f156ee72cc0fd283242676deaa0b 155 Gene3D G3DSA:3.10.450.50 2 155 2.8E-55 T 10-10-2018 AMQ28_06940 e1e2f156ee72cc0fd283242676deaa0b 155 SUPERFAMILY SSF54427 26 128 2.1E-33 T 10-10-2018 IPR032710 NTF2-like domain superfamily AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 Gene3D G3DSA:1.10.443.10 114 296 7.5E-54 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 SUPERFAMILY SSF56349 7 296 3.53E-53 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 302 49.482 T 10-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 19 88 1.2E-15 T 10-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 Gene3D G3DSA:1.10.150.130 4 108 4.6E-20 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_03330 59f9e6c983f7885bb7ca1837e9ee3a1f 305 Pfam PF00589 Phage integrase family 118 288 4.5E-38 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_03940 f87715ad2a20d4498d0922756f13075d 194 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 3 185 3.0E-24 T 10-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AMQ28_03940 f87715ad2a20d4498d0922756f13075d 194 Pfam PF04973 Nicotinamide mononucleotide transporter 3 180 1.5E-46 T 10-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 Gene3D G3DSA:3.40.190.10 116 327 3.2E-133 T 10-10-2018 AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 Pfam PF13531 Bacterial extracellular solute-binding protein 43 282 3.3E-44 T 10-10-2018 AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 Gene3D G3DSA:3.40.190.10 29 297 3.2E-133 T 10-10-2018 AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 328 1.1E-143 T 10-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 50 62 - T 10-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site AMQ28_09670 b6f62353ea33e9a3874a3897a5b8d2d7 333 SUPERFAMILY SSF53850 22 329 4.29E-84 T 10-10-2018 AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 345 1.2E-129 T 10-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 Gene3D G3DSA:3.30.450.90 1 100 3.9E-26 T 10-10-2018 AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 SUPERFAMILY SSF52540 4 338 1.96E-67 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 SMART SM00382 123 248 3.1E-4 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 Gene3D G3DSA:3.40.50.300 103 357 1.4E-86 T 10-10-2018 AMQ28_11565 d6cc70c64cc3aeceac146709c612d401 373 Pfam PF00437 Type II/IV secretion system protein 12 269 4.7E-35 T 10-10-2018 IPR001482 Type II/IV secretion system protein AMQ28_03090 49084a9f5a7cd133e3b028b2dfdeeb5d 545 Gene3D G3DSA:1.20.1730.10 26 455 2.3E-55 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily AMQ28_03090 49084a9f5a7cd133e3b028b2dfdeeb5d 545 Pfam PF00474 Sodium:solute symporter family 37 420 6.3E-29 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMQ28_07810 72c2c6a3f8e01bf3f32cf75c42160d78 180 SUPERFAMILY SSF51261 55 179 4.71E-33 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_07810 72c2c6a3f8e01bf3f32cf75c42160d78 180 Pfam PF01551 Peptidase family M23 74 168 6.6E-24 T 10-10-2018 IPR016047 Peptidase M23 AMQ28_07810 72c2c6a3f8e01bf3f32cf75c42160d78 180 Gene3D G3DSA:2.70.70.10 18 180 1.4E-48 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_13425 8eead7de44bf72ad6e26a3e5180d5cea 411 Gene3D G3DSA:1.10.443.10 215 407 4.2E-19 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_13425 8eead7de44bf72ad6e26a3e5180d5cea 411 Pfam PF00589 Phage integrase family 224 373 6.2E-12 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_13425 8eead7de44bf72ad6e26a3e5180d5cea 411 Gene3D G3DSA:1.10.150.130 102 210 3.2E-9 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_13425 8eead7de44bf72ad6e26a3e5180d5cea 411 SUPERFAMILY SSF56349 107 375 8.54E-36 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 SUPERFAMILY SSF52733 2 345 6.8E-104 T 10-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 Gene3D G3DSA:3.40.50.10210 54 328 2.2E-117 T 10-10-2018 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 10 347 32.48 T 10-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 Pfam PF02277 Phosphoribosyltransferase 10 345 4.5E-120 T 10-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 Gene3D G3DSA:1.10.1610.10 22 345 2.2E-117 T 10-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMQ28_00315 c2abe11da5eea15e3875536f4ce5ddfe 350 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 14 345 6.0E-121 T 10-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 SUPERFAMILY SSF102114 101 321 1.44E-19 T 10-10-2018 AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 Gene3D G3DSA:3.20.20.70 46 331 1.5E-82 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 Pfam PF04055 Radical SAM superfamily 113 214 7.5E-7 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 Pfam PF13394 4Fe-4S single cluster domain 114 170 4.7E-5 T 10-10-2018 AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 11 332 5.4E-134 T 10-10-2018 IPR022462 Lysine-2,3-aminomutase-like AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 TIGRFAM TIGR00238 TIGR00238: KamA family protein 8 325 1.4E-97 T 10-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMQ28_02655 a19ba65fdb2e8c4a51dfd955b225da18 338 PIRSF PIRSF004911 4 336 5.7E-106 T 10-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMQ28_04495 0825cadba1f2c307121733f93f7339f7 97 SUPERFAMILY SSF50249 4 67 3.92E-12 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_04495 0825cadba1f2c307121733f93f7339f7 97 Gene3D G3DSA:2.40.50.140 1 88 2.2E-15 T 10-10-2018 AMQ28_04495 0825cadba1f2c307121733f93f7339f7 97 Pfam PF00313 'Cold-shock' DNA-binding domain 7 66 1.7E-10 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_04495 0825cadba1f2c307121733f93f7339f7 97 PIRSF PIRSF002599 1 91 1.1E-12 T 10-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMQ28_04495 0825cadba1f2c307121733f93f7339f7 97 SMART SM00357 7 68 3.1E-5 T 10-10-2018 IPR011129 Cold shock domain GO:0003676 AMQ28_05510 96e844c5a2d78e5748bacab51a28bddc 173 SUPERFAMILY SSF46689 58 163 2.15E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_05510 96e844c5a2d78e5748bacab51a28bddc 173 SUPERFAMILY SSF48295 2 56 1.26E-11 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_05510 96e844c5a2d78e5748bacab51a28bddc 173 Pfam PF13518 Helix-turn-helix domain 8 53 1.6E-7 T 10-10-2018 AMQ28_05510 96e844c5a2d78e5748bacab51a28bddc 173 Pfam PF13518 Helix-turn-helix domain 65 114 1.7E-9 T 10-10-2018 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 SUPERFAMILY SSF51419 8 235 6.11E-60 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 60 78 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 339 352 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 155 166 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 123 135 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 267 282 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 193 220 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 26 42 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 250 265 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 PRINTS PR00992 Alanine racemase signature 288 305 2.2E-61 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 TIGRFAM TIGR00492 alr: alanine racemase 2 354 2.3E-103 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 Gene3D G3DSA:2.40.37.10 8 351 5.0E-132 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 Hamap MF_01201 Alanine racemase. 1 355 31.044 T 10-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 Gene3D G3DSA:3.20.20.10 10 218 5.0E-132 T 10-10-2018 IPR029066 PLP-binding barrel AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 SMART SM01005 234 355 1.9E-55 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 Pfam PF01168 Alanine racemase, N-terminal domain 8 220 4.6E-58 T 10-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 SUPERFAMILY SSF50621 229 354 1.05E-43 T 10-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMQ28_01425 c225d3ac7dfc12b3f30f36d59b4c731f 355 Pfam PF00842 Alanine racemase, C-terminal domain 234 354 1.3E-39 T 10-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMQ28_02790 0afad948e6dc5a5757b5c2424162d9d3 341 SUPERFAMILY SSF53850 26 335 9.77E-64 T 10-10-2018 AMQ28_02790 0afad948e6dc5a5757b5c2424162d9d3 341 Gene3D G3DSA:3.40.190.10 27 306 1.1E-52 T 10-10-2018 AMQ28_02790 0afad948e6dc5a5757b5c2424162d9d3 341 Gene3D G3DSA:3.40.190.10 113 279 1.1E-52 T 10-10-2018 AMQ28_02790 0afad948e6dc5a5757b5c2424162d9d3 341 Pfam PF12849 PBP superfamily domain 18 304 8.3E-41 T 10-10-2018 IPR024370 PBP domain AMQ28_12075 50ce2f12a82dee8cdaf10fb79fd73d4b 98 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 4 98 23.792 T 10-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMQ28_12075 50ce2f12a82dee8cdaf10fb79fd73d4b 98 Pfam PF01386 Ribosomal L25p family 6 95 3.6E-22 T 10-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMQ28_12075 50ce2f12a82dee8cdaf10fb79fd73d4b 98 Gene3D G3DSA:2.40.240.10 3 98 2.7E-27 T 10-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_12075 50ce2f12a82dee8cdaf10fb79fd73d4b 98 SUPERFAMILY SSF50715 5 97 3.14E-24 T 10-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_12075 50ce2f12a82dee8cdaf10fb79fd73d4b 98 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 17 97 3.0E-35 T 10-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMQ28_05735 b953ecf5975a2428699f8fcbb3058adc 213 Gene3D G3DSA:3.90.470.20 94 192 1.4E-13 T 10-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMQ28_05735 b953ecf5975a2428699f8fcbb3058adc 213 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 94 160 3.7E-13 T 10-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMQ28_05735 b953ecf5975a2428699f8fcbb3058adc 213 SUPERFAMILY SSF56214 93 198 8.89E-17 T 10-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMQ28_05735 b953ecf5975a2428699f8fcbb3058adc 213 SUPERFAMILY SSF56214 41 84 3.79E-10 T 10-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMQ28_02090 767595b2b7d4a8a67d791a5708dba51a 486 SMART SM01118 1 202 1.1E-23 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMQ28_02090 767595b2b7d4a8a67d791a5708dba51a 486 Pfam PF01928 CYTH domain 1 180 2.8E-21 T 10-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMQ28_02090 767595b2b7d4a8a67d791a5708dba51a 486 Gene3D G3DSA:2.40.320.10 1 195 6.1E-32 T 10-10-2018 AMQ28_02090 767595b2b7d4a8a67d791a5708dba51a 486 SUPERFAMILY SSF55154 1 216 5.07E-38 T 10-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMQ28_00115 bf6c73148b7795e63ff5a038fffca32f 77 Gene3D G3DSA:1.25.40.10 4 77 1.2E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_00115 bf6c73148b7795e63ff5a038fffca32f 77 SUPERFAMILY SSF81901 27 73 9.94E-7 T 10-10-2018 AMQ28_05470 76d5ae375939f8de20496e16a846c9a7 444 Pfam PF03096 Ndr family 66 308 6.8E-8 T 10-10-2018 IPR004142 NDRG AMQ28_05470 76d5ae375939f8de20496e16a846c9a7 444 Gene3D G3DSA:2.40.10.220 326 441 1.5E-5 T 10-10-2018 AMQ28_05470 76d5ae375939f8de20496e16a846c9a7 444 SUPERFAMILY SSF53474 36 307 1.9E-28 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_05470 76d5ae375939f8de20496e16a846c9a7 444 SUPERFAMILY SSF141371 328 432 2.63E-5 T 10-10-2018 AMQ28_05470 76d5ae375939f8de20496e16a846c9a7 444 Gene3D G3DSA:3.40.50.1820 38 311 2.3E-28 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01820 4bff8c0704c8e9200a6d9c7b3383cceb 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 16 132 1.0E-40 T 10-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMQ28_01820 4bff8c0704c8e9200a6d9c7b3383cceb 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 7.0E-47 T 10-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMQ28_01820 4bff8c0704c8e9200a6d9c7b3383cceb 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 18.664 T 10-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 2 894 18.396 T 10-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 191 207 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 587 616 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 250 265 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 389 409 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 545 565 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 138 151 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 719 745 5.9E-68 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 Pfam PF00311 Phosphoenolpyruvate carboxylase 134 894 1.9E-278 T 10-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 547 559 - T 10-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 Gene3D G3DSA:1.20.1440.90 278 392 1.9E-27 T 10-10-2018 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 SUPERFAMILY SSF51621 6 894 1.13E-303 T 10-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMQ28_07875 63f57f0d74f2d7b3b51813f8c368b677 894 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 139 150 - T 10-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AMQ28_07650 2cf5c482b40883c5677c980bad039496 149 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 12 139 4.0E-38 T 10-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMQ28_07650 2cf5c482b40883c5677c980bad039496 149 SUPERFAMILY SSF48013 10 141 1.83E-37 T 10-10-2018 IPR035926 NusB-like superfamily AMQ28_07650 2cf5c482b40883c5677c980bad039496 149 Gene3D G3DSA:1.10.940.10 6 145 1.9E-43 T 10-10-2018 IPR035926 NusB-like superfamily AMQ28_07650 2cf5c482b40883c5677c980bad039496 149 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 10 141 21.03 T 10-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMQ28_07650 2cf5c482b40883c5677c980bad039496 149 Pfam PF01029 NusB family 13 137 4.8E-29 T 10-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMQ28_10025 f64ee21b2d3d5a9fd69cb5a00c73f783 153 Pfam PF04657 Putative inner membrane exporter, YdcZ 12 149 1.1E-43 T 10-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AMQ28_13345 e51467f3cad1bda79eb42075d15f1a32 389 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 388 2.6E-198 T 10-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 AMQ28_13345 e51467f3cad1bda79eb42075d15f1a32 389 Gene3D G3DSA:3.40.640.10 42 287 2.7E-121 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_13345 e51467f3cad1bda79eb42075d15f1a32 389 SUPERFAMILY SSF53383 2 389 2.72E-90 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_13345 e51467f3cad1bda79eb42075d15f1a32 389 Gene3D G3DSA:3.90.1150.10 13 380 2.7E-121 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_13345 e51467f3cad1bda79eb42075d15f1a32 389 Pfam PF00155 Aminotransferase class I and II 30 385 4.3E-51 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 SUPERFAMILY SSF56349 97 394 6.18E-45 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 Pfam PF00589 Phage integrase family 233 384 2.2E-17 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 Gene3D G3DSA:1.10.150.130 88 210 4.3E-16 T 10-10-2018 IPR010998 Integrase/recombinase, N-terminal AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 Gene3D G3DSA:1.10.443.10 211 395 7.2E-19 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 Gene3D G3DSA:3.30.160.390 1 87 2.8E-29 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMQ28_13310 482480bbae9575d652a15b4db10025a2 405 Pfam PF13356 Arm DNA-binding domain 2 87 5.3E-18 T 10-10-2018 IPR025166 Integrase, DNA-binding domain AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 25 252 2.3E-77 T 10-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 Gene3D G3DSA:3.40.710.10 18 271 3.5E-82 T 10-10-2018 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 SMART SM00936 273 363 1.2E-32 T 10-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 SUPERFAMILY SSF56601 5 273 1.35E-76 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 363 4.2E-24 T 10-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 57 68 3.6E-16 T 10-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 Gene3D G3DSA:2.60.410.10 273 363 4.5E-29 T 10-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_02730 7b34cf6f1038fd15637a7b9a292d4130 382 SUPERFAMILY SSF69189 273 365 1.96E-24 T 10-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMQ28_13530 3003d1eed2e3b75aa29430ad891454c4 322 SUPERFAMILY SSF53474 16 320 1.33E-29 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13530 3003d1eed2e3b75aa29430ad891454c4 322 Pfam PF12146 Serine aminopeptidase, S33 48 298 1.0E-18 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_13530 3003d1eed2e3b75aa29430ad891454c4 322 Gene3D G3DSA:3.40.50.1820 19 320 1.1E-39 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 SUPERFAMILY SSF56645 21 264 1.09E-59 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 239 2.9E-17 T 10-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Gene3D G3DSA:2.40.110.10 136 251 1.3E-40 T 10-10-2018 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 399 7.0E-31 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Gene3D G3DSA:1.10.540.10 1 135 1.6E-47 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 132 2.5E-14 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 Gene3D G3DSA:1.20.140.10 252 406 1.8E-33 T 10-10-2018 AMQ28_00410 4fe4ff93a84b4cc4c524ba7245026feb 410 SUPERFAMILY SSF47203 250 403 7.57E-38 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_11200 39ed106cb5b07cc9245a60773af295b5 180 Pfam PF00071 Ras family 7 129 4.2E-5 T 10-10-2018 IPR001806 Small GTPase GO:0003924|GO:0005525 AMQ28_11200 39ed106cb5b07cc9245a60773af295b5 180 SUPERFAMILY SSF52540 6 172 2.2E-17 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11200 39ed106cb5b07cc9245a60773af295b5 180 Gene3D G3DSA:3.40.50.300 3 178 9.7E-16 T 10-10-2018 AMQ28_07475 d205034bce78da9d684484ea9f487e39 188 PIRSF PIRSF016919 1 188 7.2E-28 T 10-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMQ28_07475 d205034bce78da9d684484ea9f487e39 188 Pfam PF04955 HupE / UreJ protein 13 183 6.0E-27 T 10-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.1E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.1E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.4E-13 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 Gene3D G3DSA:1.10.357.10 5 191 1.4E-21 T 10-10-2018 AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 SUPERFAMILY SSF46689 2 84 8.48E-15 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07025 6644307ccd637ee88446c12c89b96442 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 10-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMQ28_10085 93e0260b8b261e507695e4940d3bbbac 222 Pfam PF02470 MlaD protein 39 164 5.3E-30 T 10-10-2018 IPR003399 Mce/MlaD AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 SUPERFAMILY SSF51735 22 193 4.1E-49 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 189 213 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 75 102 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 214 238 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 149 169 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 254 271 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 25 42 3.0E-38 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 Gene3D G3DSA:3.40.50.720 11 203 1.3E-59 T 10-10-2018 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 196 334 5.0E-47 T 10-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 SUPERFAMILY SSF48179 195 347 1.84E-50 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 PIRSF PIRSF000114 15 348 8.2E-105 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 Gene3D G3DSA:1.10.1040.10 205 351 1.1E-46 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 21 338 33.444 T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 23 173 1.9E-48 T 10-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_02240 e22c6c7648bc860bc894f4b0c4c4bb49 357 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 204 225 - T 10-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMQ28_03980 675539173730c9ea90fa317a7ac48e66 149 Pfam PF01522 Polysaccharide deacetylase 98 138 3.7E-7 T 10-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMQ28_03980 675539173730c9ea90fa317a7ac48e66 149 SUPERFAMILY SSF88713 59 139 1.17E-16 T 10-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMQ28_03980 675539173730c9ea90fa317a7ac48e66 149 Gene3D G3DSA:3.20.20.370 34 142 3.3E-29 T 10-10-2018 AMQ28_11310 edf2aca87360a20898e8483791eec579 412 SUPERFAMILY SSF53335 194 320 7.34E-17 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_11310 edf2aca87360a20898e8483791eec579 412 Pfam PF13679 Methyltransferase domain 169 304 1.6E-30 T 10-10-2018 IPR025714 Methyltransferase domain AMQ28_11310 edf2aca87360a20898e8483791eec579 412 Gene3D G3DSA:3.40.50.150 158 296 9.6E-12 T 10-10-2018 AMQ28_05155 d0efd8e9aa380f370e981c7bb8b86bcd 111 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 100 1.9E-18 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMQ28_05155 d0efd8e9aa380f370e981c7bb8b86bcd 111 Gene3D G3DSA:3.30.160.100 1 104 5.3E-26 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMQ28_05155 d0efd8e9aa380f370e981c7bb8b86bcd 111 SUPERFAMILY SSF69754 1 101 5.23E-23 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMQ28_05155 d0efd8e9aa380f370e981c7bb8b86bcd 111 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 9.1E-22 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMQ28_01545 034ae4122cd0faeba89bc4680d60ac9f 114 Gene3D G3DSA:1.10.3730.20 6 114 3.1E-36 T 10-10-2018 AMQ28_01545 034ae4122cd0faeba89bc4680d60ac9f 114 SUPERFAMILY SSF103481 11 109 7.72E-20 T 10-10-2018 AMQ28_01545 034ae4122cd0faeba89bc4680d60ac9f 114 Pfam PF00893 Small Multidrug Resistance protein 7 98 1.4E-26 T 10-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMQ28_08485 0f2c5f105bff8239ae7fa4e4806342a4 179 Gene3D G3DSA:1.20.58.320 1 78 1.0E-26 T 10-10-2018 AMQ28_08485 0f2c5f105bff8239ae7fa4e4806342a4 179 SUPERFAMILY SSF48452 2 175 2.58E-67 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_08485 0f2c5f105bff8239ae7fa4e4806342a4 179 Gene3D G3DSA:1.25.40.10 79 179 6.1E-33 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_08485 0f2c5f105bff8239ae7fa4e4806342a4 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 175 3.0E-61 T 10-10-2018 IPR010323 Protein of unknown function DUF924 AMQ28_04230 64521e79a992476407360f91ee8216fa 426 ProSitePatterns PS01215 Mrp family signature. 277 293 - T 10-10-2018 IPR000808 Mrp, conserved site GO:0005524 AMQ28_04230 64521e79a992476407360f91ee8216fa 426 Gene3D G3DSA:3.40.50.300 160 411 8.4E-80 T 10-10-2018 AMQ28_04230 64521e79a992476407360f91ee8216fa 426 SUPERFAMILY SSF52540 164 394 1.67E-55 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04230 64521e79a992476407360f91ee8216fa 426 Hamap MF_02040 Iron-sulfur cluster carrier protein. 162 412 36.351 T 10-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AMQ28_04230 64521e79a992476407360f91ee8216fa 426 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 170 411 9.7E-98 T 10-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AMQ28_04975 a39478a33868f45ca2b8b62dada42776 188 Gene3D G3DSA:3.40.50.1820 2 187 1.1E-38 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_04975 a39478a33868f45ca2b8b62dada42776 188 Pfam PF06821 Serine hydrolase 5 181 3.4E-26 T 10-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMQ28_04975 a39478a33868f45ca2b8b62dada42776 188 SUPERFAMILY SSF53474 2 182 1.1E-23 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 211 1.8E-24 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 Pfam PF12833 Helix-turn-helix domain 262 338 3.0E-21 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 Gene3D G3DSA:1.10.10.60 236 340 1.8E-27 T 10-10-2018 AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 SUPERFAMILY SSF46689 290 339 3.09E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 306 321 3.5E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 321 337 3.5E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_00480 a1f4fd40b7c6d2b29351fcf66bbe471a 342 SMART SM00342 255 337 7.0E-24 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_01720 f6e243e90b2e5781e66bb202ec7b122a 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 242 4.1E-78 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMQ28_01720 f6e243e90b2e5781e66bb202ec7b122a 253 Gene3D G3DSA:3.90.550.10 1 252 1.1E-90 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_01720 f6e243e90b2e5781e66bb202ec7b122a 253 Pfam PF02348 Cytidylyltransferase 4 222 1.7E-50 T 10-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMQ28_01720 f6e243e90b2e5781e66bb202ec7b122a 253 SUPERFAMILY SSF53448 3 246 2.58E-55 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_01720 f6e243e90b2e5781e66bb202ec7b122a 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 249 36.964 T 10-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMQ28_06140 5183c22ce455d6f0e5642bd7924d78af 82 SUPERFAMILY SSF46689 15 74 4.48E-10 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_06140 5183c22ce455d6f0e5642bd7924d78af 82 Gene3D G3DSA:1.10.10.60 9 70 2.3E-5 T 10-10-2018 AMQ28_08725 84b9a9e7327d143106599721c398238c 328 SUPERFAMILY SSF50182 143 206 2.06E-16 T 10-10-2018 IPR010920 LSM domain superfamily AMQ28_08725 84b9a9e7327d143106599721c398238c 328 Gene3D G3DSA:2.30.30.60 159 207 1.7E-15 T 10-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMQ28_08725 84b9a9e7327d143106599721c398238c 328 SUPERFAMILY SSF82861 58 142 3.4E-8 T 10-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMQ28_08725 84b9a9e7327d143106599721c398238c 328 Gene3D G3DSA:3.30.70.100 210 304 1.3E-20 T 10-10-2018 AMQ28_08725 84b9a9e7327d143106599721c398238c 328 Pfam PF00924 Mechanosensitive ion channel 105 300 7.6E-45 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMQ28_08725 84b9a9e7327d143106599721c398238c 328 SUPERFAMILY SSF82689 212 310 5.89E-23 T 10-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 Gene3D G3DSA:3.40.1080.10 4 215 2.3E-84 T 10-10-2018 AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 Pfam PF01144 Coenzyme A transferase 9 195 2.9E-37 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 SMART SM00882 9 206 5.3E-65 T 10-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 SUPERFAMILY SSF100950 8 212 5.71E-63 T 10-10-2018 IPR037171 NagB/RpiA transferase-like AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 10-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 AMQ28_00585 801eb91367c9e1dbef8119fc9eca3ea3 219 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 1.6E-88 T 10-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 SUPERFAMILY SSF52540 4 198 5.24E-34 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 5 203 47.184 T 10-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 7 203 9.3E-104 T 10-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 Gene3D G3DSA:3.40.50.300 7 203 4.0E-49 T 10-10-2018 AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 179 1.3E-36 T 10-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMQ28_07470 245b4d93a04fde8fa14f99966f7af096 204 PIRSF PIRSF005624 1 203 1.5E-46 T 10-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AMQ28_13115 7db58cb8ad7f7ee590f9c6b31452f68a 134 Pfam PF06356 Protein of unknown function (DUF1064) 23 119 1.3E-21 T 10-10-2018 IPR009414 Protein of unknown function DUF1064 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Gene3D G3DSA:1.20.140.10 362 507 1.3E-96 T 10-10-2018 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Gene3D G3DSA:1.10.540.10 123 236 1.3E-96 T 10-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Pfam PF09317 Domain of unknown function (DUF1974) 516 800 1.2E-89 T 10-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 SUPERFAMILY SSF56645 123 357 9.82E-45 T 10-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 SUPERFAMILY SSF47203 362 510 3.7E-24 T 10-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 128 234 3.2E-19 T 10-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 362 502 1.3E-13 T 10-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMQ28_03080 a0b7f9cbfaaddd0059103b6fabd16011 834 Gene3D G3DSA:2.40.110.10 237 361 1.3E-96 T 10-10-2018 AMQ28_03805 1de2a32eba4c29899964c701617fd2f5 481 Gene3D G3DSA:2.40.160.130 22 476 6.5E-164 T 10-10-2018 IPR038636 Capsule assembly protein Wzi superfamily AMQ28_03805 1de2a32eba4c29899964c701617fd2f5 481 Pfam PF14052 Capsule assembly protein Wzi 94 467 2.4E-110 T 10-10-2018 IPR026950 Capsule assembly protein Wzi AMQ28_03185 fa8a8900690ff67e139ef875b08f257f 604 TIGRFAM TIGR04212 GlyGly_RbtA: rhombotarget A 1 602 1.4E-240 T 10-10-2018 IPR026454 Rhombotarget A AMQ28_03185 fa8a8900690ff67e139ef875b08f257f 604 SUPERFAMILY SSF51126 9 449 2.32E-9 T 10-10-2018 IPR011050 Pectin lyase fold/virulence factor AMQ28_02885 817b7c9b2b1ae17a7cbcc9ec79b2cc20 360 Pfam PF03922 OmpW family 119 360 4.8E-15 T 10-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AMQ28_02885 817b7c9b2b1ae17a7cbcc9ec79b2cc20 360 SUPERFAMILY SSF56925 130 360 2.2E-15 T 10-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMQ28_08055 14c4222340e167260f1a592d56bf97ee 335 Gene3D G3DSA:3.40.190.170 55 243 7.7E-12 T 10-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMQ28_09900 a190449b8476d69fa3251f3008f24982 323 Gene3D G3DSA:3.40.50.1820 35 323 2.2E-74 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09900 a190449b8476d69fa3251f3008f24982 323 SUPERFAMILY SSF53474 38 318 3.35E-35 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09900 a190449b8476d69fa3251f3008f24982 323 Pfam PF00561 alpha/beta hydrolase fold 43 145 1.9E-9 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_06865 26533335432e6004e7d509fc38eb8be3 152 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 152 81.31 T 10-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMQ28_06865 26533335432e6004e7d509fc38eb8be3 152 Pfam PF03477 ATP cone domain 50 136 6.5E-18 T 10-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMQ28_06865 26533335432e6004e7d509fc38eb8be3 152 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.3E-60 T 10-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 Gene3D G3DSA:3.40.50.720 97 285 1.5E-92 T 10-10-2018 AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 286 4.4E-52 T 10-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 10-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 SUPERFAMILY SSF51735 101 287 2.57E-50 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 Gene3D G3DSA:3.40.50.720 25 314 1.5E-92 T 10-10-2018 AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 309 2.2E-20 T 10-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMQ28_04670 23627e1c425c001f98fb63e0693061cb 316 SUPERFAMILY SSF52283 24 133 7.02E-24 T 10-10-2018 AMQ28_03380 ce4377af3e39390a40e9551916bb04f6 112 Pfam PF11804 Protein of unknown function (DUF3325) 10 104 3.0E-18 T 10-10-2018 IPR021762 Protein of unknown function DUF3325 AMQ28_03865 ff4e9071bf37e25a1cad1757d9e5280f 244 Pfam PF00005 ABC transporter 36 184 1.8E-31 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_03865 ff4e9071bf37e25a1cad1757d9e5280f 244 Gene3D G3DSA:3.40.50.300 13 242 3.0E-63 T 10-10-2018 AMQ28_03865 ff4e9071bf37e25a1cad1757d9e5280f 244 SMART SM00382 44 231 9.2E-13 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03865 ff4e9071bf37e25a1cad1757d9e5280f 244 SUPERFAMILY SSF52540 15 237 5.7E-64 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03865 ff4e9071bf37e25a1cad1757d9e5280f 244 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_01520 c253c8d6605106ff8e9cb3a1b91931ac 141 Pfam PF05232 Chlorhexidine efflux transporter 5 64 4.0E-17 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter AMQ28_01520 c253c8d6605106ff8e9cb3a1b91931ac 141 Pfam PF05232 Chlorhexidine efflux transporter 70 132 7.1E-22 T 10-10-2018 IPR007896 Chlorhexidine efflux transporter AMQ28_03780 496de02856ac9c371bf3a6fc550c6ac5 499 Pfam PF00999 Sodium/hydrogen exchanger family 13 417 6.2E-35 T 10-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMQ28_03780 496de02856ac9c371bf3a6fc550c6ac5 499 Gene3D G3DSA:1.20.1530.20 2 422 6.6E-7 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_13660 73fa772e9bc545416f4ea493c6d7a74d 132 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 46 94 3.9E-12 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_12920 73fa772e9bc545416f4ea493c6d7a74d 132 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 46 94 3.9E-12 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_06980 dca84ea04ebe3849a783d8adf46fff6d 119 SUPERFAMILY SSF55298 11 116 5.03E-30 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMQ28_06980 dca84ea04ebe3849a783d8adf46fff6d 119 Gene3D G3DSA:3.30.1330.40 1 119 2.4E-38 T 10-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMQ28_06980 dca84ea04ebe3849a783d8adf46fff6d 119 Pfam PF01042 Endoribonuclease L-PSP 3 115 1.3E-25 T 10-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 Pfam PF03466 LysR substrate binding domain 91 280 8.1E-39 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 SUPERFAMILY SSF53850 92 293 3.83E-40 T 10-10-2018 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.8E-15 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 Gene3D G3DSA:1.10.10.10 1 86 9.1E-19 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.6E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 SUPERFAMILY SSF46785 2 113 1.11E-15 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 Gene3D G3DSA:3.40.190.10 167 266 4.8E-84 T 10-10-2018 AMQ28_03015 c7227510fd469f770098306d9858d2aa 307 Gene3D G3DSA:3.40.190.10 91 301 4.8E-84 T 10-10-2018 AMQ28_04570 5a67c51c452a06bc175474254a1e18ec 310 Pfam PF13737 Transposase DDE domain 23 130 3.4E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_01135 5a67c51c452a06bc175474254a1e18ec 310 Pfam PF13737 Transposase DDE domain 23 130 3.4E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_13940 a4a80bc4f1fb207c4ec2c6a6ac89d63d 127 Gene3D G3DSA:3.30.56.110 8 127 5.5E-48 T 10-10-2018 AMQ28_13940 a4a80bc4f1fb207c4ec2c6a6ac89d63d 127 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 13 126 1.6E-48 T 10-10-2018 IPR018714 Protein of unknown function DUF2237 AMQ28_01495 81c2f96b3cd401ba1e6dbc9ab051e59e 416 Pfam PF00144 Beta-lactamase 39 385 1.9E-50 T 10-10-2018 IPR001466 Beta-lactamase-related AMQ28_01495 81c2f96b3cd401ba1e6dbc9ab051e59e 416 Gene3D G3DSA:3.40.710.30 15 404 2.1E-99 T 10-10-2018 AMQ28_01495 81c2f96b3cd401ba1e6dbc9ab051e59e 416 SUPERFAMILY SSF56601 27 401 5.41E-67 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_00300 0154c371727340a74a31463478bce00d 156 PIRSF PIRSF006181 1 156 1.2E-56 T 10-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMQ28_00300 0154c371727340a74a31463478bce00d 156 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 152 4.2E-57 T 10-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMQ28_00300 0154c371727340a74a31463478bce00d 156 Pfam PF04073 Aminoacyl-tRNA editing domain 32 142 1.8E-25 T 10-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_00300 0154c371727340a74a31463478bce00d 156 SUPERFAMILY SSF55826 2 152 1.44E-42 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_00300 0154c371727340a74a31463478bce00d 156 Gene3D G3DSA:3.90.960.10 1 156 2.6E-57 T 10-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMQ28_03305 473cefbe67c6778dcb77602ca1a41809 201 PIRSF PIRSF006324 1 201 1.5E-43 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_03305 473cefbe67c6778dcb77602ca1a41809 201 Pfam PF01810 LysE type translocator 14 198 1.6E-27 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 SUPERFAMILY SSF53850 90 305 3.1E-36 T 10-10-2018 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 Pfam PF03466 LysR substrate binding domain 97 305 2.0E-15 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 Gene3D G3DSA:3.40.190.10 170 279 5.1E-60 T 10-10-2018 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 SUPERFAMILY SSF46785 2 83 4.42E-19 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.9E-17 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 Gene3D G3DSA:1.10.10.10 1 86 3.7E-31 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 Gene3D G3DSA:3.40.190.10 92 303 5.1E-60 T 10-10-2018 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_03670 2c03454f7f8c94e7f162e0d4e3094aeb 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-6 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 Pfam PF00171 Aldehyde dehydrogenase family 27 490 1.6E-165 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 Gene3D G3DSA:3.40.605.10 23 489 2.9E-165 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 10-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 10-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 SUPERFAMILY SSF53720 14 495 5.37E-164 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_13520 32bf860101f819d1bea14683fe710741 503 Gene3D G3DSA:3.40.309.10 266 461 2.9E-165 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_11955 025d929b35b1c669105f047cf5ead136 686 Pfam PF10136 Site-specific recombinase 27 665 5.3E-220 T 10-10-2018 IPR011385 Putative site-specific recombinase Gcr AMQ28_11955 025d929b35b1c669105f047cf5ead136 686 PIRSF PIRSF015380 2 679 2.3E-166 T 10-10-2018 IPR011385 Putative site-specific recombinase Gcr AMQ28_08915 543f067a3019283310a9c8f17e367953 68 Pfam PF01381 Helix-turn-helix 12 63 4.6E-14 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_08915 543f067a3019283310a9c8f17e367953 68 SUPERFAMILY SSF47413 2 67 8.45E-17 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_08915 543f067a3019283310a9c8f17e367953 68 Gene3D G3DSA:1.10.260.40 1 68 3.2E-19 T 10-10-2018 AMQ28_08915 543f067a3019283310a9c8f17e367953 68 SMART SM00530 11 66 6.1E-12 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_08865 25e58cc8d7aee66e0e8d1eef38d96887 195 Gene3D G3DSA:2.40.50.140 1 126 2.6E-43 T 10-10-2018 AMQ28_08865 25e58cc8d7aee66e0e8d1eef38d96887 195 Pfam PF00436 Single-strand binding protein family 6 110 2.4E-37 T 10-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMQ28_08865 25e58cc8d7aee66e0e8d1eef38d96887 195 Hamap MF_00984 Single-stranded DNA-binding protein. 6 114 33.806 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMQ28_08865 25e58cc8d7aee66e0e8d1eef38d96887 195 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 195 3.2E-49 T 10-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMQ28_08865 25e58cc8d7aee66e0e8d1eef38d96887 195 SUPERFAMILY SSF50249 5 195 9.6E-51 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 PRINTS PR01438 Universal stress protein signature 1 11 2.7E-9 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 PRINTS PR01438 Universal stress protein signature 240 252 2.7E-9 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 PRINTS PR01438 Universal stress protein signature 258 280 2.7E-9 T 10-10-2018 IPR006015 Universal stress protein A AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 Gene3D G3DSA:3.40.50.12370 2 280 4.7E-47 T 10-10-2018 AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 SUPERFAMILY SSF52402 164 280 2.51E-19 T 10-10-2018 AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 SUPERFAMILY SSF52402 1 157 3.85E-11 T 10-10-2018 AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 Pfam PF00582 Universal stress protein family 213 280 1.9E-12 T 10-10-2018 IPR006016 UspA AMQ28_13695 cbdc283a8e80cf92732a770c11873fa8 280 Pfam PF00582 Universal stress protein family 1 157 9.8E-6 T 10-10-2018 IPR006016 UspA AMQ28_02830 12ecaa255de0d882ede1a290d89d46df 125 Gene3D G3DSA:1.10.10.10 3 125 3.7E-38 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02830 12ecaa255de0d882ede1a290d89d46df 125 Pfam PF01638 HxlR-like helix-turn-helix 27 114 2.1E-26 T 10-10-2018 IPR002577 Helix-turn-helix, HxlR type AMQ28_02830 12ecaa255de0d882ede1a290d89d46df 125 SUPERFAMILY SSF46785 13 117 1.75E-30 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_04465 fd2aad1338fbf2f120422c4490bd7260 564 Pfam PF05552 Conserved TM helix 102 149 3.0E-17 T 10-10-2018 IPR008910 Conserved TM helix AMQ28_04465 fd2aad1338fbf2f120422c4490bd7260 564 Pfam PF05552 Conserved TM helix 192 237 1.7E-14 T 10-10-2018 IPR008910 Conserved TM helix AMQ28_04465 fd2aad1338fbf2f120422c4490bd7260 564 Pfam PF05552 Conserved TM helix 283 331 1.1E-11 T 10-10-2018 IPR008910 Conserved TM helix AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Pfam PF05746 DALR anticodon binding domain 475 601 8.7E-29 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 SMART SM00836 475 601 1.2E-43 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Gene3D G3DSA:1.10.730.10 470 601 1.5E-28 T 10-10-2018 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 601 24.302 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Gene3D G3DSA:3.30.1360.70 1 111 6.7E-24 T 10-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 SUPERFAMILY SSF47323 469 601 9.16E-28 T 10-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 PRINTS PR01038 Arginyl-tRNA synthetase signature 344 365 3.8E-19 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 3.8E-19 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 3.8E-19 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 3.8E-19 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 SMART SM01016 3 91 1.1E-33 T 10-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Pfam PF00750 tRNA synthetases class I (R) 101 454 5.5E-20 T 10-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 SUPERFAMILY SSF52374 114 484 6.66E-80 T 10-10-2018 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 91 9.1E-22 T 10-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 28 601 9.8E-126 T 10-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_08465 66bc35fd278c9241bcef9e74caef5e63 601 SUPERFAMILY SSF55190 21 111 1.7E-22 T 10-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 Pfam PF00209 Sodium:neurotransmitter symporter family 125 479 3.8E-64 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 Pfam PF00209 Sodium:neurotransmitter symporter family 5 119 2.6E-39 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 29 43 - T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 SUPERFAMILY SSF161070 5 485 1.83E-136 T 10-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 2.7E-26 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 2.7E-26 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 2.7E-26 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 2.7E-26 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07930 e47342a82e8cff7632e0350896b0b6a0 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 391 411 2.7E-26 T 10-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 AMQ28_07130 83807525d9fb1f1a7c7f6a6803e77423 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 2.3E-46 T 10-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 AMQ28_07130 83807525d9fb1f1a7c7f6a6803e77423 156 SUPERFAMILY SSF81573 62 121 9.29E-13 T 10-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily AMQ28_07130 83807525d9fb1f1a7c7f6a6803e77423 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.178 T 10-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMQ28_07130 83807525d9fb1f1a7c7f6a6803e77423 156 Gene3D G3DSA:1.20.5.620 62 122 2.3E-14 T 10-10-2018 AMQ28_07130 83807525d9fb1f1a7c7f6a6803e77423 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 5.1E-36 T 10-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMQ28_09175 fadd2100949a196c0c696d2d14f25d86 243 Gene3D G3DSA:3.20.20.70 2 242 1.1E-86 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_09175 fadd2100949a196c0c696d2d14f25d86 243 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 233 3.5E-79 T 10-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMQ28_09175 fadd2100949a196c0c696d2d14f25d86 243 Pfam PF00977 Histidine biosynthesis protein 3 229 1.3E-78 T 10-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMQ28_09175 fadd2100949a196c0c696d2d14f25d86 243 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 35.993 T 10-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMQ28_09175 fadd2100949a196c0c696d2d14f25d86 243 SUPERFAMILY SSF51366 1 238 5.26E-75 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_14265 f3d317912581549307e3e34c3e6c669b 378 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 27 378 25.137 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_14265 f3d317912581549307e3e34c3e6c669b 378 Pfam PF01098 Cell cycle protein 37 377 9.9E-97 T 10-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_14265 f3d317912581549307e3e34c3e6c669b 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 33 378 2.2E-117 T 10-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_03355 c31ebfbdb1b19912be75cf6fa144b94d 467 Pfam PF00324 Amino acid permease 23 461 3.8E-101 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_03355 c31ebfbdb1b19912be75cf6fa144b94d 467 ProSitePatterns PS00218 Amino acid permeases signature. 48 78 - T 10-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMQ28_03355 c31ebfbdb1b19912be75cf6fa144b94d 467 Gene3D G3DSA:1.20.1740.10 14 467 1.2E-60 T 10-10-2018 AMQ28_03355 c31ebfbdb1b19912be75cf6fa144b94d 467 PIRSF PIRSF006060 5 467 8.4E-67 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 PIRSF PIRSF000151 1 421 1.2E-179 T 10-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 410 9.6E-153 T 10-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 Gene3D G3DSA:3.40.309.10 229 378 3.1E-164 T 10-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 Pfam PF00171 Aldehyde dehydrogenase family 14 307 4.8E-18 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 Pfam PF00171 Aldehyde dehydrogenase family 313 377 1.7E-6 T 10-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 SUPERFAMILY SSF53720 8 420 1.83E-119 T 10-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 420 41.305 T 10-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 Gene3D G3DSA:3.40.605.10 15 417 3.1E-164 T 10-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMQ28_05475 eb1fc9a1b2aebcc39bc4e25e5874fb10 421 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 349 - T 10-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 Gene3D G3DSA:3.40.47.10 6 281 1.1E-152 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 Gene3D G3DSA:3.40.47.10 141 397 1.1E-152 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 SUPERFAMILY SSF53901 3 275 2.8E-81 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 10-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 SUPERFAMILY SSF53901 277 399 9.39E-43 T 10-10-2018 IPR016039 Thiolase-like GO:0003824 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 10-10-2018 IPR020610 Thiolase, active site GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 400 7.9E-219 T 10-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 10-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 Pfam PF00108 Thiolase, N-terminal domain 5 267 1.2E-78 T 10-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 PIRSF PIRSF000429 1 400 6.2E-128 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 7.0E-136 T 10-10-2018 IPR002155 Thiolase GO:0016747 AMQ28_00580 21bf070b60499a3b8b2fac87639221ca 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 3.1E-44 T 10-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 SUPERFAMILY SSF81271 381 440 1.2E-13 T 10-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 SMART SM00954 235 345 6.5E-6 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 Gene3D G3DSA:3.30.460.10 197 325 4.0E-6 T 10-10-2018 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 Gene3D G3DSA:3.10.20.30 375 445 1.5E-20 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 Pfam PF02824 TGS domain 381 440 8.7E-15 T 10-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 Pfam PF13328 HD domain 32 178 1.4E-39 T 10-10-2018 IPR003607 HD/PDEase domain AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 SUPERFAMILY SSF109604 16 194 2.75E-58 T 10-10-2018 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 SUPERFAMILY SSF81301 198 354 8.34E-19 T 10-10-2018 AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 SMART SM00471 47 157 3.4E-10 T 10-10-2018 IPR003607 HD/PDEase domain AMQ28_09825 9c87c9f5d729c2e0729e8e885e21aeb3 701 Gene3D G3DSA:1.10.3210.10 5 194 1.5E-64 T 10-10-2018 AMQ28_09960 39e50c0dd1b321a7ca38266dcac23274 716 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 13 707 6.7E-200 T 10-10-2018 IPR010020 Integral membrane protein, YccS/YhfK AMQ28_09960 39e50c0dd1b321a7ca38266dcac23274 716 Pfam PF12805 FUSC-like inner membrane protein yccS 68 347 2.4E-84 T 10-10-2018 IPR032692 Integral membrane protein YccS, N-terminal AMQ28_09960 39e50c0dd1b321a7ca38266dcac23274 716 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 707 2.3E-205 T 10-10-2018 IPR010019 Integral membrane protein, YccS AMQ28_09960 39e50c0dd1b321a7ca38266dcac23274 716 Pfam PF13515 Fusaric acid resistance protein-like 410 530 5.6E-21 T 10-10-2018 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 Pfam PF13531 Bacterial extracellular solute-binding protein 20 245 1.2E-36 T 10-10-2018 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 24 244 1.6E-53 T 10-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 PIRSF PIRSF004846 1 249 9.9E-61 T 10-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 Gene3D G3DSA:3.40.190.10 98 207 5.3E-63 T 10-10-2018 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 Gene3D G3DSA:3.40.190.10 21 245 5.3E-63 T 10-10-2018 AMQ28_03480 00c71f8001fdc1d2874000e01a387bde 249 SUPERFAMILY SSF53850 18 245 2.56E-53 T 10-10-2018 AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 SUPERFAMILY SSF52833 3 209 8.87E-64 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 196 6.7E-11 T 10-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 Pfam PF00578 AhpC/TSA family 6 135 5.8E-28 T 10-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 Gene3D G3DSA:3.30.1020.10 146 210 2.0E-26 T 10-10-2018 AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 Gene3D G3DSA:3.40.30.10 1 145 8.4E-46 T 10-10-2018 AMQ28_11125 522ef4f8c55d9dd57e9b7df171031792 213 PIRSF PIRSF000239 1 209 2.4E-74 T 10-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 Pfam PF00464 Serine hydroxymethyltransferase 8 385 1.9E-181 T 10-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 Gene3D G3DSA:3.90.1150.10 9 393 4.4E-185 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 6 416 53.066 T 10-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 10-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 Gene3D G3DSA:3.40.640.10 36 288 4.4E-185 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 SUPERFAMILY SSF53383 4 415 4.81E-182 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_12950 df00672cbfe84532b5a0215a1dafd15e 417 PIRSF PIRSF000412 2 417 3.5E-168 T 10-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMQ28_10685 5d1906e3cb2c5b0c8317141f7208d914 348 Pfam PF06067 Domain of unknown function (DUF932) 77 328 8.5E-78 T 10-10-2018 IPR026325 Protein of unknown function DUF932 AMQ28_10685 5d1906e3cb2c5b0c8317141f7208d914 348 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 344 1.3E-116 T 10-10-2018 IPR017686 Phage/plasmid-like protein AMQ28_04220 d2c985884c49c04d1a54b47816023f5e 197 Pfam PF01810 LysE type translocator 12 191 3.0E-13 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_09590 3d57395694b34574cdedc0a7441cd8a2 537 Pfam PF13009 Putative phage integrase 30 357 1.2E-102 T 10-10-2018 IPR024965 Putative phage integrase AMQ28_07165 b82e67975249abb617a7b6bdb523d782 266 SUPERFAMILY SSF81345 4 256 4.58E-33 T 10-10-2018 IPR037294 ABC transporter, BtuC-like AMQ28_07165 b82e67975249abb617a7b6bdb523d782 266 Pfam PF00950 ABC 3 transport family 6 258 1.4E-53 T 10-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMQ28_07165 b82e67975249abb617a7b6bdb523d782 266 Gene3D G3DSA:1.10.3470.10 33 266 6.8E-8 T 10-10-2018 IPR037294 ABC transporter, BtuC-like AMQ28_12555 f0ae56ef272ca0c85490854c92419723 295 Pfam PF07859 alpha/beta hydrolase fold 77 165 2.2E-16 T 10-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMQ28_12555 f0ae56ef272ca0c85490854c92419723 295 SUPERFAMILY SSF53474 35 268 2.86E-40 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12555 f0ae56ef272ca0c85490854c92419723 295 Gene3D G3DSA:3.40.50.1820 7 279 8.1E-50 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_10645 97b16ce1bf0d17ce3f5cb0d3bb043a18 90 Pfam PF11112 Pyocin activator protein PrtN 8 81 3.3E-18 T 10-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 Gene3D G3DSA:1.10.357.10 1 185 3.5E-36 T 10-10-2018 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 SUPERFAMILY SSF46689 3 69 1.44E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 8.8E-12 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 6.6E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 6.6E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_02565 841acf44831647a00414a6e7f3ab0869 188 SUPERFAMILY SSF48498 78 179 3.6E-11 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 Pfam PF02566 OsmC-like protein 32 126 2.2E-10 T 10-10-2018 IPR003718 OsmC/Ohr family AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 727 0.0 T 10-10-2018 IPR019938 YcaO domain protein AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 Gene3D G3DSA:3.30.300.20 3 129 1.5E-15 T 10-10-2018 IPR015946 K homology domain-like, alpha/beta AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 SUPERFAMILY SSF82784 1 127 2.75E-20 T 10-10-2018 IPR036102 OsmC/Ohr superfamily AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 205 540 1.9E-70 T 10-10-2018 IPR003776 YcaO-like domain AMQ28_00750 84b7c75da25e35f34b9b7b79761c097d 736 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 159 551 3.1E-96 T 10-10-2018 IPR003776 YcaO-like domain AMQ28_13570 d6e630baea5d48fd42e9f9a686dc3da4 208 SUPERFAMILY SSF53448 14 200 2.14E-21 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_13570 d6e630baea5d48fd42e9f9a686dc3da4 208 Gene3D G3DSA:3.90.550.10 10 206 3.9E-33 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_13570 d6e630baea5d48fd42e9f9a686dc3da4 208 Pfam PF12804 MobA-like NTP transferase domain 16 163 2.5E-20 T 10-10-2018 IPR025877 MobA-like NTP transferase AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Pfam PF01580 FtsK/SpoIIIE family 641 854 1.1E-64 T 10-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Gene3D G3DSA:3.30.980.40 531 636 2.6E-32 T 10-10-2018 AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 SUPERFAMILY SSF52540 614 927 8.3E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Pfam PF09397 Ftsk gamma domain 960 1020 9.5E-27 T 10-10-2018 IPR018541 FtsK gamma domain AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 SMART SM00843 958 1020 8.7E-33 T 10-10-2018 IPR018541 FtsK gamma domain AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Gene3D G3DSA:1.10.10.10 952 1019 4.7E-27 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Gene3D G3DSA:3.40.50.300 637 940 3.1E-111 T 10-10-2018 AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 13 172 1.6E-28 T 10-10-2018 IPR025199 DNA translocase FtsK, 4TM region AMQ28_11470 1564adccb76f1f287ef23bc840d82179 1020 SUPERFAMILY SSF46785 958 1020 2.65E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 Gene3D G3DSA:3.30.1300.30 37 124 9.9E-10 T 10-10-2018 AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 Pfam PF02501 Type II secretion system (T2SS), protein I 46 104 3.7E-9 T 10-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 SUPERFAMILY SSF54523 46 107 8.89E-12 T 10-10-2018 AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 29 9.8E-6 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 3.3E-7 T 10-10-2018 IPR012902 Prokaryotic N-terminal methylation site AMQ28_01690 7320051f027f64e7a9e993641681ac06 129 TIGRFAM TIGR01707 gspI: type II secretion system protein I 9 105 5.6E-15 T 10-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 Gene3D G3DSA:3.40.50.620 1 178 9.1E-75 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 Hamap MF_00158 Pantothenate synthetase [panC]. 2 277 39.586 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 71 6.2E-10 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 Gene3D G3DSA:3.30.1300.10 179 279 2.4E-27 T 10-10-2018 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 SUPERFAMILY SSF52374 1 278 9.06E-103 T 10-10-2018 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 277 3.7E-95 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMQ28_05705 31ee768cc1b29c34a5e1cdc679190345 281 Pfam PF02569 Pantoate-beta-alanine ligase 5 275 3.3E-102 T 10-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMQ28_11385 ea2d8e28e0ff75afe726525ce8794cf0 150 Gene3D G3DSA:3.30.530.20 4 146 3.3E-38 T 10-10-2018 IPR023393 START-like domain superfamily AMQ28_11385 ea2d8e28e0ff75afe726525ce8794cf0 150 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 141 1.6E-25 T 10-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMQ28_11385 ea2d8e28e0ff75afe726525ce8794cf0 150 SUPERFAMILY SSF55961 1 145 1.5E-41 T 10-10-2018 AMQ28_00145 238eb6600882e65f88be7654c8a3661a 197 SUPERFAMILY SSF55469 1 196 1.27E-65 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_00145 238eb6600882e65f88be7654c8a3661a 197 Gene3D G3DSA:3.40.109.10 2 197 3.3E-79 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_00145 238eb6600882e65f88be7654c8a3661a 197 Pfam PF00881 Nitroreductase family 7 175 1.4E-16 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMQ28_08470 89f69af984fc7c31ea4b1bcb614def40 84 Pfam PF11391 Protein of unknown function (DUF2798) 26 82 5.8E-20 T 10-10-2018 IPR021529 Protein of unknown function DUF2798 AMQ28_06130 8f68949ac413f67abb2ebe8d71b03b1f 82 SUPERFAMILY SSF143120 12 68 7.76E-7 T 10-10-2018 IPR036165 YefM-like superfamily AMQ28_06130 8f68949ac413f67abb2ebe8d71b03b1f 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 11 77 2.0E-6 T 10-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMQ28_03210 610a4c73667fd2dbc6463796b535d80f 268 Gene3D G3DSA:3.40.50.1820 1 268 3.1E-43 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03210 610a4c73667fd2dbc6463796b535d80f 268 SUPERFAMILY SSF53474 2 262 1.42E-25 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03210 610a4c73667fd2dbc6463796b535d80f 268 Pfam PF12697 Alpha/beta hydrolase family 49 255 2.5E-11 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 SUPERFAMILY SSF52788 2 142 1.83E-39 T 10-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 Gene3D G3DSA:3.40.50.2300 1 142 1.7E-43 T 10-10-2018 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 138 2.5E-34 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 SMART SM00226 4 141 2.6E-50 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 2.3E-17 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 76 91 2.3E-17 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 98 111 2.3E-17 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 2.3E-17 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_07775 68c0116cf6c9c85681e5c033096b337f 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 42 58 2.3E-17 T 10-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 395 32.812 T 10-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 SUPERFAMILY SSF118215 10 393 9.68E-86 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 PRINTS PR00173 Glutamate-aspartate symporter signature 216 235 1.8E-13 T 10-10-2018 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 1.8E-13 T 10-10-2018 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 PRINTS PR00173 Glutamate-aspartate symporter signature 181 200 1.8E-13 T 10-10-2018 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 PRINTS PR00173 Glutamate-aspartate symporter signature 318 337 1.8E-13 T 10-10-2018 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 PRINTS PR00173 Glutamate-aspartate symporter signature 283 309 1.8E-13 T 10-10-2018 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 Pfam PF00375 Sodium:dicarboxylate symporter family 10 393 1.6E-60 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_00545 086a54136a68b9602e3e95d68176261e 395 Gene3D G3DSA:1.10.3860.10 1 395 2.9E-66 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_09785 7643880d9c7bef9f61ba9e8d4c3e8ce6 186 Pfam PF04536 TPM domain 39 160 1.4E-14 T 10-10-2018 IPR007621 TPM domain AMQ28_09785 7643880d9c7bef9f61ba9e8d4c3e8ce6 186 Gene3D G3DSA:3.10.310.50 34 182 2.5E-43 T 10-10-2018 AMQ28_09280 08ad6c1bb3f0c38f2d85f88e4e238e80 264 Pfam PF13622 Thioesterase-like superfamily 19 262 1.2E-40 T 10-10-2018 AMQ28_09280 08ad6c1bb3f0c38f2d85f88e4e238e80 264 SUPERFAMILY SSF54637 14 107 1.13E-16 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_09280 08ad6c1bb3f0c38f2d85f88e4e238e80 264 SUPERFAMILY SSF54637 118 262 5.22E-23 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_09280 08ad6c1bb3f0c38f2d85f88e4e238e80 264 Gene3D G3DSA:3.10.129.90 6 263 6.5E-60 T 10-10-2018 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 2.0E-34 T 10-10-2018 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 SMART SM01387 8 88 8.6E-52 T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.263 T 10-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 SUPERFAMILY SSF47060 3 89 9.12E-35 T 10-10-2018 IPR009068 S15/NS1, RNA-binding AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 Pfam PF00312 Ribosomal protein S15 9 88 1.2E-36 T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 10-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 Gene3D G3DSA:1.10.287.10 2 89 2.0E-35 T 10-10-2018 AMQ28_06470 7aa9a7fb337d5d51c208a7cbe3a9699b 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 6.1E-38 T 10-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_01635 46974eaa5db54070b057f7d80372ca24 121 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 87 2.6E-16 T 10-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AMQ28_07575 21a415f084f0492fa2d5a09e81f7567f 100 Pfam PF01381 Helix-turn-helix 19 66 2.2E-10 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_07575 21a415f084f0492fa2d5a09e81f7567f 100 SUPERFAMILY SSF47413 8 67 5.85E-13 T 10-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMQ28_07575 21a415f084f0492fa2d5a09e81f7567f 100 Gene3D G3DSA:1.10.260.40 6 78 3.4E-18 T 10-10-2018 AMQ28_07575 21a415f084f0492fa2d5a09e81f7567f 100 SMART SM00530 18 71 8.3E-10 T 10-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMQ28_08065 e2a592c6b1cbd959b50dd954f871bd41 337 Gene3D G3DSA:3.40.190.170 59 244 3.8E-12 T 10-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMQ28_08065 e2a592c6b1cbd959b50dd954f871bd41 337 SUPERFAMILY SSF53850 129 212 1.01E-5 T 10-10-2018 AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 Gene3D G3DSA:1.10.10.10 3 90 8.2E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 SUPERFAMILY SSF53850 90 300 1.03E-35 T 10-10-2018 AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 Gene3D G3DSA:3.40.190.290 92 296 3.0E-47 T 10-10-2018 AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 SUPERFAMILY SSF46785 5 89 4.91E-21 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 Pfam PF03466 LysR substrate binding domain 90 295 1.1E-33 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_02705 c73a957d5003b9e2d4e7cdf373b2a5ea 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.1E-20 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 SMART SM00358 162 229 3.5E-16 T 10-10-2018 IPR014720 Double-stranded RNA-binding domain AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 Hamap MF_00104 Ribonuclease 3 [rnc]. 13 225 28.522 T 10-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 Pfam PF14622 Ribonuclease-III-like 24 146 1.7E-32 T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 SMART SM00535 25 155 1.9E-48 T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 Pfam PF00035 Double-stranded RNA binding motif 162 228 1.6E-11 T 10-10-2018 IPR014720 Double-stranded RNA-binding domain AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 Gene3D G3DSA:3.30.160.20 160 229 6.0E-17 T 10-10-2018 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 SUPERFAMILY SSF54768 114 228 1.37E-24 T 10-10-2018 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 Gene3D G3DSA:1.10.1520.10 8 154 5.2E-44 T 10-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 ProSitePatterns PS00517 Ribonuclease III family signature. 43 51 - T 10-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 SUPERFAMILY SSF69065 12 164 4.88E-48 T 10-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMQ28_02935 ed1f1a944fe1890740fc11ddad38e3c4 229 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 228 2.1E-69 T 10-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMQ28_07630 be83ea4c0908b90c72a9baddc205ff33 450 SUPERFAMILY SSF50952 69 438 8.24E-36 T 10-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMQ28_07630 be83ea4c0908b90c72a9baddc205ff33 450 Gene3D G3DSA:2.120.10.30 64 436 1.5E-17 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMQ28_07630 be83ea4c0908b90c72a9baddc205ff33 450 Pfam PF07995 Glucose / Sorbosone dehydrogenase 170 363 9.8E-17 T 10-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMQ28_03060 01610eae7a6533c99a385544fdb19000 191 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 69 1.6E-11 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMQ28_03060 01610eae7a6533c99a385544fdb19000 191 Gene3D G3DSA:3.40.50.620 1 188 2.3E-56 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_03060 01610eae7a6533c99a385544fdb19000 191 Pfam PF01467 Cytidylyltransferase-like 9 64 1.7E-8 T 10-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMQ28_03060 01610eae7a6533c99a385544fdb19000 191 SUPERFAMILY SSF52374 9 168 5.33E-25 T 10-10-2018 AMQ28_09955 e968deb2afc92016ff7962d109dfaa78 409 SUPERFAMILY SSF103473 9 390 7.85E-59 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_09955 e968deb2afc92016ff7962d109dfaa78 409 Gene3D G3DSA:1.20.1720.10 17 391 9.7E-72 T 10-10-2018 AMQ28_09955 e968deb2afc92016ff7962d109dfaa78 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 86 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_09955 e968deb2afc92016ff7962d109dfaa78 409 Pfam PF07690 Major Facilitator Superfamily 24 360 3.3E-41 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_03795 5a45a7fa3ce26cf27c67c8df245161eb 308 PIRSF PIRSF016660 1 306 1.0E-130 T 10-10-2018 IPR008526 Inner membrane protein YedI AMQ28_03795 5a45a7fa3ce26cf27c67c8df245161eb 308 Pfam PF05661 Protein of unknown function (DUF808) 3 294 2.4E-116 T 10-10-2018 IPR008526 Inner membrane protein YedI AMQ28_04415 ed3c13b2626593c2fc5170e6cf22a962 302 Pfam PF08338 Domain of unknown function (DUF1731) 253 298 1.6E-17 T 10-10-2018 IPR013549 Domain of unknown function DUF1731 AMQ28_04415 ed3c13b2626593c2fc5170e6cf22a962 302 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 225 1.2E-19 T 10-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMQ28_04415 ed3c13b2626593c2fc5170e6cf22a962 302 Gene3D G3DSA:3.40.50.720 2 289 1.0E-64 T 10-10-2018 AMQ28_04415 ed3c13b2626593c2fc5170e6cf22a962 302 SUPERFAMILY SSF51735 6 288 1.7E-37 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_04415 ed3c13b2626593c2fc5170e6cf22a962 302 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 6 295 2.6E-84 T 10-10-2018 IPR010099 Epimerase family protein SDR39U1 AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 SUPERFAMILY SSF51735 12 244 3.1E-57 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 Gene3D G3DSA:3.40.50.720 3 248 4.1E-66 T 10-10-2018 AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 Pfam PF00106 short chain dehydrogenase 17 213 5.6E-44 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 8.4E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 8.4E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 8.4E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 8.4E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_08325 64ec14dfd9d210d6f00a2ee11acbc828 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 8.4E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_02760 a222f451c065faf8c61e24dd610ae232 213 Pfam PF09997 Predicted membrane protein (DUF2238) 42 191 1.4E-44 T 10-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 AMQ28_02760 a222f451c065faf8c61e24dd610ae232 213 PIRSF PIRSF020606 4 211 5.7E-49 T 10-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 AMQ28_04165 c1d482af6e67894424684dfa2bacab1c 122 Gene3D G3DSA:3.40.50.12740 2 122 5.1E-42 T 10-10-2018 AMQ28_04165 c1d482af6e67894424684dfa2bacab1c 122 SMART SM00448 2 115 8.9E-38 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04165 c1d482af6e67894424684dfa2bacab1c 122 Pfam PF00072 Response regulator receiver domain 4 115 5.8E-27 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04165 c1d482af6e67894424684dfa2bacab1c 122 SUPERFAMILY SSF52172 2 120 6.97E-38 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 363 387 3.1E-20 T 10-10-2018 AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 329 341 3.1E-20 T 10-10-2018 AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 224 240 3.1E-20 T 10-10-2018 AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 247 261 3.1E-20 T 10-10-2018 AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 SUPERFAMILY SSF53335 10 575 3.22E-140 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 Pfam PF12161 HsdM N-terminal domain 12 181 2.2E-20 T 10-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 Gene3D G3DSA:1.20.1260.30 2 184 1.8E-74 T 10-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 Pfam PF02384 N-6 DNA Methylase 200 536 5.2E-119 T 10-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMQ28_10700 f29b328179600c70c2cd212d76c2f91e 576 Gene3D G3DSA:3.40.50.150 201 519 1.7E-131 T 10-10-2018 AMQ28_08970 580e7f4e4abec56abceb47dca11b5719 101 Gene3D G3DSA:1.10.10.10 10 55 6.9E-16 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_08970 580e7f4e4abec56abceb47dca11b5719 101 SUPERFAMILY SSF46689 23 93 8.42E-11 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 SUPERFAMILY SSF56935 62 732 1.63E-107 T 10-10-2018 AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 79 727 1.2E-88 T 10-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 Gene3D G3DSA:2.40.170.20 186 732 4.5E-131 T 10-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 Pfam PF00593 TonB dependent receptor 265 731 4.2E-37 T 10-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 Gene3D G3DSA:2.170.130.10 54 185 5.7E-35 T 10-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMQ28_00275 9edba9ffc0597eb586d3efacde77c4e0 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 167 5.9E-14 T 10-10-2018 IPR012910 TonB-dependent receptor, plug domain AMQ28_10585 b862413019c5aec7c47baf8688ee01d3 104 Gene3D G3DSA:3.40.250.10 11 104 2.3E-19 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_10585 b862413019c5aec7c47baf8688ee01d3 104 Pfam PF00581 Rhodanese-like domain 16 91 7.4E-9 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_10585 b862413019c5aec7c47baf8688ee01d3 104 SUPERFAMILY SSF52821 14 103 2.49E-19 T 10-10-2018 IPR036873 Rhodanese-like domain superfamily AMQ28_10585 b862413019c5aec7c47baf8688ee01d3 104 SMART SM00450 2 99 1.5E-11 T 10-10-2018 IPR001763 Rhodanese-like domain AMQ28_10780 18b299eb022575b49af94b00dac38a9f 308 SUPERFAMILY SSF103481 218 304 5.62E-14 T 10-10-2018 AMQ28_10780 18b299eb022575b49af94b00dac38a9f 308 Pfam PF00892 EamA-like transporter family 162 300 2.7E-17 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_10780 18b299eb022575b49af94b00dac38a9f 308 Pfam PF00892 EamA-like transporter family 10 147 1.4E-18 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_10780 18b299eb022575b49af94b00dac38a9f 308 SUPERFAMILY SSF103481 47 150 1.03E-13 T 10-10-2018 AMQ28_10790 8cfec42074afc03f28c53710b8b268e7 108 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 99 7.8E-35 T 10-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 Gene3D G3DSA:1.10.3430.10 51 465 3.1E-142 T 10-10-2018 IPR029020 Ammonium/urea transporter AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 SUPERFAMILY SSF111352 68 446 7.32E-132 T 10-10-2018 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 ProSitePatterns PS01219 Ammonium transporters signature. 223 248 - T 10-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 TIGRFAM TIGR00836 amt: ammonium transporter 72 462 8.1E-136 T 10-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 Pfam PF00909 Ammonium Transporter Family 74 463 2.8E-119 T 10-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 PRINTS PR00342 Rhesus blood group protein signature 167 183 6.3E-6 T 10-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 PRINTS PR00342 Rhesus blood group protein signature 262 280 6.3E-6 T 10-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 PRINTS PR00342 Rhesus blood group protein signature 348 366 6.3E-6 T 10-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMQ28_06870 90ba9799addea02c670ace010fe687fd 465 PRINTS PR00342 Rhesus blood group protein signature 293 315 6.3E-6 T 10-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 AMQ28_02735 ddce481bdc670f1722d869295eca9842 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 7.1E-8 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_02735 ddce481bdc670f1722d869295eca9842 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 47 1.6E-7 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_02735 ddce481bdc670f1722d869295eca9842 183 SUPERFAMILY SSF51161 5 177 4.3E-45 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_02735 ddce481bdc670f1722d869295eca9842 183 Gene3D G3DSA:2.160.10.10 1 182 2.7E-55 T 10-10-2018 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 SUPERFAMILY SSF53850 43 256 2.85E-46 T 10-10-2018 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 Gene3D G3DSA:3.40.190.10 109 208 1.4E-70 T 10-10-2018 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 Gene3D G3DSA:3.40.190.10 35 303 1.4E-70 T 10-10-2018 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 313 1.8E-75 T 10-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 Gene3D G3DSA:1.10.8.450 239 271 1.4E-70 T 10-10-2018 AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 Pfam PF09084 NMT1/THI5 like 63 247 1.5E-26 T 10-10-2018 IPR015168 SsuA/THI5-like AMQ28_01315 d699bbef6e648b1069f5aafce39dd052 323 SMART SM00062 31 244 7.0E-4 T 10-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 SUPERFAMILY SSF51735 136 321 4.35E-36 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 SMART SM01002 145 316 7.1E-73 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 8.6E-38 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 Gene3D G3DSA:3.40.50.720 136 323 1.5E-129 T 10-10-2018 AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 10-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 SMART SM01003 4 136 1.1E-51 T 10-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 371 1.7E-71 T 10-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 SUPERFAMILY SSF52283 1 167 7.57E-48 T 10-10-2018 AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 Gene3D G3DSA:3.40.50.720 3 369 1.5E-129 T 10-10-2018 AMQ28_10785 a7efc1e30b97059dbee710fb8f61be8d 375 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 169 194 - T 10-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMQ28_10360 ab9ef36fd2e6cec5de171b419b625958 71 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 49 1.3E-16 T 10-10-2018 IPR012658 Conserved hypothetical protein CHP02443 AMQ28_10360 ab9ef36fd2e6cec5de171b419b625958 71 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 3 49 1.4E-16 T 10-10-2018 IPR012658 Conserved hypothetical protein CHP02443 AMQ28_13895 023f2200b719de50d6838392c20b39b3 228 SUPERFAMILY SSF56784 8 214 3.6E-33 T 10-10-2018 IPR036412 HAD-like superfamily AMQ28_13895 023f2200b719de50d6838392c20b39b3 228 Gene3D G3DSA:3.40.50.1000 8 195 1.6E-23 T 10-10-2018 IPR023214 HAD superfamily AMQ28_13895 023f2200b719de50d6838392c20b39b3 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 185 2.1E-16 T 10-10-2018 AMQ28_00735 df4a742809f6e7232f4f927b30a8efe6 257 Gene3D G3DSA:3.90.226.10 2 199 4.8E-75 T 10-10-2018 AMQ28_00735 df4a742809f6e7232f4f927b30a8efe6 257 SUPERFAMILY SSF52096 1 256 4.68E-90 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_00735 df4a742809f6e7232f4f927b30a8efe6 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 10-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMQ28_00735 df4a742809f6e7232f4f927b30a8efe6 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 257 2.1E-84 T 10-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMQ28_00735 df4a742809f6e7232f4f927b30a8efe6 257 Gene3D G3DSA:1.10.12.10 200 256 1.1E-24 T 10-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMQ28_08020 aa95ccb90656296cbd1079cfdfe0b80d 485 Gene3D G3DSA:1.10.443.10 210 431 1.8E-15 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_08020 aa95ccb90656296cbd1079cfdfe0b80d 485 Pfam PF00589 Phage integrase family 217 428 9.4E-9 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_08020 aa95ccb90656296cbd1079cfdfe0b80d 485 SUPERFAMILY SSF56349 213 430 7.06E-18 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_09050 9037db142e163590f2db65036dade2d8 432 SUPERFAMILY SSF51905 2 409 9.07E-34 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09050 9037db142e163590f2db65036dade2d8 432 Gene3D G3DSA:3.50.50.60 1 270 9.7E-19 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_09050 9037db142e163590f2db65036dade2d8 432 Pfam PF01593 Flavin containing amine oxidoreductase 10 269 1.1E-13 T 10-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMQ28_10740 28f2598b9b0035d1d12a82b364f4a13b 215 Pfam PF12686 Protein of unknown function (DUF3800) 20 190 6.6E-13 T 10-10-2018 IPR024524 Protein of unknown function DUF3800 AMQ28_01480 33dac5328c0ab477f5a0adc2d1743ebd 386 SUPERFAMILY SSF56796 2 385 2.75E-109 T 10-10-2018 AMQ28_01480 33dac5328c0ab477f5a0adc2d1743ebd 386 Gene3D G3DSA:1.20.1090.10 186 386 1.3E-57 T 10-10-2018 AMQ28_01480 33dac5328c0ab477f5a0adc2d1743ebd 386 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 376 5.1E-105 T 10-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMQ28_01480 33dac5328c0ab477f5a0adc2d1743ebd 386 Gene3D G3DSA:3.40.50.1970 1 185 2.3E-48 T 10-10-2018 AMQ28_01480 33dac5328c0ab477f5a0adc2d1743ebd 386 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 10-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMQ28_08500 d7537ca3711e82c0c07ddb72ce0c7011 174 Pfam PF02600 Disulfide bond formation protein DsbB 6 157 1.6E-40 T 10-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMQ28_08500 d7537ca3711e82c0c07ddb72ce0c7011 174 Gene3D G3DSA:1.20.1550.10 2 168 5.9E-49 T 10-10-2018 IPR023380 DsbB-like superfamily AMQ28_08500 d7537ca3711e82c0c07ddb72ce0c7011 174 SUPERFAMILY SSF158442 11 158 1.7E-40 T 10-10-2018 IPR023380 DsbB-like superfamily AMQ28_08500 d7537ca3711e82c0c07ddb72ce0c7011 174 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 1 165 22.614 T 10-10-2018 IPR022920 Disulphide bond formation protein DsbB AMQ28_13700 aa3f5caddfd910956de35d242d3868be 221 Gene3D G3DSA:3.40.50.150 1 221 2.2E-62 T 10-10-2018 AMQ28_13700 aa3f5caddfd910956de35d242d3868be 221 SUPERFAMILY SSF53335 4 219 2.11E-36 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_13700 aa3f5caddfd910956de35d242d3868be 221 Pfam PF01596 O-methyltransferase 20 191 7.4E-39 T 10-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AMQ28_05665 f67483f5a3696b09abd12c02ca580ce6 152 Gene3D G3DSA:2.60.40.790 33 139 6.7E-20 T 10-10-2018 IPR008978 HSP20-like chaperone AMQ28_05665 f67483f5a3696b09abd12c02ca580ce6 152 SUPERFAMILY SSF49764 32 138 3.84E-18 T 10-10-2018 IPR008978 HSP20-like chaperone AMQ28_05665 f67483f5a3696b09abd12c02ca580ce6 152 Pfam PF00011 Hsp20/alpha crystallin family 42 138 1.1E-13 T 10-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMQ28_12455 b1ad537aa92e4b606460641f50b1662c 279 SUPERFAMILY SSF53187 19 272 9.71E-39 T 10-10-2018 AMQ28_12455 b1ad537aa92e4b606460641f50b1662c 279 Pfam PF04389 Peptidase family M28 54 268 9.4E-26 T 10-10-2018 IPR007484 Peptidase M28 AMQ28_12455 b1ad537aa92e4b606460641f50b1662c 279 Gene3D G3DSA:3.40.630.10 7 275 1.7E-49 T 10-10-2018 AMQ28_05750 6487ef024616a8428e3ae1b72750144b 233 SUPERFAMILY SSF48452 81 193 2.25E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_05750 6487ef024616a8428e3ae1b72750144b 233 Gene3D G3DSA:1.25.40.10 33 219 3.0E-7 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_05750 6487ef024616a8428e3ae1b72750144b 233 PIRSF PIRSF006170 1 218 3.7E-62 T 10-10-2018 IPR026039 Uncharacterised protein family UPF0070 AMQ28_05750 6487ef024616a8428e3ae1b72750144b 233 Pfam PF09976 Tetratricopeptide repeat-like domain 14 213 4.1E-40 T 10-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AMQ28_09905 7541ce45525fdd7bc8cce86f6ea3f439 327 Gene3D G3DSA:3.40.50.1820 40 327 1.5E-66 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09905 7541ce45525fdd7bc8cce86f6ea3f439 327 SUPERFAMILY SSF53474 43 297 8.57E-30 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_09905 7541ce45525fdd7bc8cce86f6ea3f439 327 Pfam PF00561 alpha/beta hydrolase fold 47 150 5.4E-8 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_01805 e16042f37d7d8cfc3c2368f693da4851 111 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 2 74 1.2E-16 T 10-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ AMQ28_01805 e16042f37d7d8cfc3c2368f693da4851 111 Gene3D G3DSA:1.10.1220.10 2 51 6.3E-14 T 10-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMQ28_01805 e16042f37d7d8cfc3c2368f693da4851 111 Pfam PF04221 RelB antitoxin 6 77 1.9E-13 T 10-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ AMQ28_04640 6a3f8a47141c63fa58f2049ce24204dc 214 Pfam PF10282 Lactonase, 7-bladed beta-propeller 2 211 1.3E-54 T 10-10-2018 IPR019405 Lactonase, 7-bladed beta propeller AMQ28_04640 6a3f8a47141c63fa58f2049ce24204dc 214 Gene3D G3DSA:2.130.10.10 1 214 4.9E-61 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMQ28_04640 6a3f8a47141c63fa58f2049ce24204dc 214 SUPERFAMILY SSF50974 8 197 4.18E-24 T 10-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AMQ28_00430 ec7bc4cd9ecc6a1efa719204cf5d4370 236 Gene3D G3DSA:3.40.50.1110 32 236 9.4E-21 T 10-10-2018 IPR036514 SGNH hydrolase superfamily AMQ28_00430 ec7bc4cd9ecc6a1efa719204cf5d4370 236 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 223 9.9E-13 T 10-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMQ28_00430 ec7bc4cd9ecc6a1efa719204cf5d4370 236 SUPERFAMILY SSF52266 43 235 4.73E-31 T 10-10-2018 AMQ28_04650 74106a19e60c7ddb58dd724692e19112 332 SUPERFAMILY SSF56529 115 312 6.11E-24 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_04650 74106a19e60c7ddb58dd724692e19112 332 PIRSF PIRSF033905 1 329 2.2E-160 T 10-10-2018 IPR009645 Uncharacterised conserved protein GguC AMQ28_04650 74106a19e60c7ddb58dd724692e19112 332 Gene3D G3DSA:3.90.850.10 106 320 9.5E-13 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 Pfam PF13353 4Fe-4S single cluster domain 29 116 1.7E-8 T 10-10-2018 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 SMART SM00729 22 225 6.4E-4 T 10-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 SUPERFAMILY SSF102114 13 286 1.05E-62 T 10-10-2018 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 Pfam PF04055 Radical SAM superfamily 26 186 5.2E-23 T 10-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 Gene3D G3DSA:3.20.20.70 10 346 2.5E-86 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 Pfam PF06463 Molybdenum Cofactor Synthesis C 192 320 2.8E-30 T 10-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_13575 2c6a692d804e2f1095bd5ff94dfe4b72 346 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 14 346 5.4E-107 T 10-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 Gene3D G3DSA:3.40.50.80 100 255 5.8E-37 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 Pfam PF00175 Oxidoreductase NAD-binding domain 112 229 6.4E-5 T 10-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 Pfam PF00970 Oxidoreductase FAD-binding domain 15 99 9.7E-11 T 10-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 Gene3D G3DSA:2.40.30.10 1 96 3.7E-29 T 10-10-2018 AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 SUPERFAMILY SSF52343 102 257 2.49E-36 T 10-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMQ28_02560 57d6fcfe843128072c07a9cfcd4f9df4 259 SUPERFAMILY SSF63380 7 99 1.0E-25 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_09730 acaba16849eaac7e30445da390a62ee0 247 PIRSF PIRSF016482 20 236 1.1E-60 T 10-10-2018 IPR007445 Pilus assembly protein, PilO AMQ28_09730 acaba16849eaac7e30445da390a62ee0 247 Pfam PF04350 Pilus assembly protein, PilO 74 220 2.0E-50 T 10-10-2018 IPR007445 Pilus assembly protein, PilO AMQ28_09730 acaba16849eaac7e30445da390a62ee0 247 Gene3D G3DSA:3.30.70.60 118 229 3.6E-34 T 10-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMQ28_13930 d2a32b55fbda76bbe92dc4dad6e39b6d 389 Gene3D G3DSA:1.10.10.2510 215 388 1.4E-14 T 10-10-2018 AMQ28_13930 d2a32b55fbda76bbe92dc4dad6e39b6d 389 SMART SM00558 93 228 1.2E-5 T 10-10-2018 IPR003347 JmjC domain AMQ28_13930 d2a32b55fbda76bbe92dc4dad6e39b6d 389 Pfam PF08007 Cupin superfamily protein 14 312 5.3E-88 T 10-10-2018 IPR003347 JmjC domain AMQ28_13930 d2a32b55fbda76bbe92dc4dad6e39b6d 389 SUPERFAMILY SSF51197 7 294 3.16E-59 T 10-10-2018 AMQ28_13930 d2a32b55fbda76bbe92dc4dad6e39b6d 389 Gene3D G3DSA:2.60.120.650 1 213 1.8E-73 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Gene3D G3DSA:3.40.50.880 11 203 5.6E-53 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 53 67 5.2E-5 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 83 99 5.2E-5 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 12 26 5.2E-5 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 SUPERFAMILY SSF52402 194 417 4.19E-58 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Gene3D G3DSA:3.40.50.620 205 402 3.0E-75 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 56 65 1.8E-7 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 1.8E-7 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 83 94 1.8E-7 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00097 Anthranilate synthase component II signature 174 187 2.6E-6 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00097 Anthranilate synthase component II signature 56 65 2.6E-6 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 PRINTS PR00097 Anthranilate synthase component II signature 83 94 2.6E-6 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 SUPERFAMILY SSF54810 402 522 4.18E-47 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 12 201 5.6E-79 T 10-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 522 1.4E-144 T 10-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Pfam PF00117 Glutamine amidotransferase class-I 14 195 4.1E-40 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Pfam PF00958 GMP synthase C terminal domain 430 521 1.2E-39 T 10-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Gene3D G3DSA:3.30.300.10 403 522 2.5E-48 T 10-10-2018 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 SUPERFAMILY SSF52317 8 234 3.12E-58 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 9 522 55.104 T 10-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AMQ28_07240 d3f47cf4ae7d7efc284b3514df1385ed 522 Pfam PF02540 NAD synthase 219 302 2.6E-8 T 10-10-2018 IPR022310 NAD/GMP synthase AMQ28_10330 ac2775b96bf3ad588651a31ee8680abc 85 Gene3D G3DSA:1.10.150.250 4 84 8.2E-20 T 10-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMQ28_10330 ac2775b96bf3ad588651a31ee8680abc 85 Pfam PF03937 Flavinator of succinate dehydrogenase 10 78 6.8E-18 T 10-10-2018 IPR005631 Flavinator of succinate dehydrogenase AMQ28_10330 ac2775b96bf3ad588651a31ee8680abc 85 SUPERFAMILY SSF109910 7 81 5.36E-18 T 10-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMQ28_06650 e096b1ae4770f0a6b8a19313fcd14f0a 107 SUPERFAMILY SSF51182 12 104 3.57E-30 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_06650 e096b1ae4770f0a6b8a19313fcd14f0a 107 Gene3D G3DSA:2.60.120.10 1 107 2.2E-45 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_06650 e096b1ae4770f0a6b8a19313fcd14f0a 107 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 11 106 24.781 T 10-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 AMQ28_06650 e096b1ae4770f0a6b8a19313fcd14f0a 107 Pfam PF06865 Protein of unknown function (DUF1255) 12 104 6.1E-32 T 10-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 AMQ28_10575 098a6b8b5e2dfe7c9988b95214e03914 166 Pfam PF14539 Domain of unknown function (DUF4442) 24 156 2.7E-31 T 10-10-2018 IPR027961 Protein of unknown function DUF4442 AMQ28_10575 098a6b8b5e2dfe7c9988b95214e03914 166 SUPERFAMILY SSF54637 25 162 2.04E-19 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_10575 098a6b8b5e2dfe7c9988b95214e03914 166 Gene3D G3DSA:3.10.129.10 9 161 1.6E-35 T 10-10-2018 AMQ28_13865 d0e615446c842afd7c647eb1d3461d4e 162 Gene3D G3DSA:3.10.129.10 10 159 1.2E-54 T 10-10-2018 AMQ28_13865 d0e615446c842afd7c647eb1d3461d4e 162 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 17 154 5.0E-56 T 10-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMQ28_13865 d0e615446c842afd7c647eb1d3461d4e 162 SUPERFAMILY SSF54637 15 155 3.54E-44 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_13865 d0e615446c842afd7c647eb1d3461d4e 162 Pfam PF07977 FabA-like domain 26 150 4.6E-31 T 10-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMQ28_13865 d0e615446c842afd7c647eb1d3461d4e 162 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 17 158 31.078 T 10-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMQ28_00550 b12c259243fa378556509ace74e9a7dd 571 SUPERFAMILY SSF52091 456 566 7.65E-14 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_00550 b12c259243fa378556509ace74e9a7dd 571 TIGRFAM TIGR00815 sulP: sulfate permease 10 550 1.1E-125 T 10-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 AMQ28_00550 b12c259243fa378556509ace74e9a7dd 571 Pfam PF01740 STAS domain 462 559 1.6E-14 T 10-10-2018 IPR002645 STAS domain AMQ28_00550 b12c259243fa378556509ace74e9a7dd 571 Gene3D G3DSA:3.30.750.24 434 567 2.9E-22 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_00550 b12c259243fa378556509ace74e9a7dd 571 Pfam PF00916 Sulfate permease family 23 404 5.6E-101 T 10-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMQ28_01950 4cf1533d847ec77524393660172b34e5 157 SMART SM00226 1 136 5.3E-33 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_01950 4cf1533d847ec77524393660172b34e5 157 SUPERFAMILY SSF52788 1 135 2.75E-35 T 10-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMQ28_01950 4cf1533d847ec77524393660172b34e5 157 Gene3D G3DSA:3.40.50.2300 1 136 7.7E-36 T 10-10-2018 AMQ28_01950 4cf1533d847ec77524393660172b34e5 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 2.3E-21 T 10-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMQ28_01780 bb0a66ed85fcb49b5ba1388d138f5ef1 180 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.6 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMQ28_01780 bb0a66ed85fcb49b5ba1388d138f5ef1 180 Gene3D G3DSA:2.30.30.100 1 69 1.6E-31 T 10-10-2018 AMQ28_01780 bb0a66ed85fcb49b5ba1388d138f5ef1 180 Pfam PF17209 Hfq protein 7 68 1.0E-30 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMQ28_01780 bb0a66ed85fcb49b5ba1388d138f5ef1 180 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.3E-29 T 10-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMQ28_01780 bb0a66ed85fcb49b5ba1388d138f5ef1 180 SUPERFAMILY SSF50182 7 67 3.68E-23 T 10-10-2018 IPR010920 LSM domain superfamily AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 10-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 Gene3D G3DSA:3.40.50.720 1 261 7.0E-80 T 10-10-2018 AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 SUPERFAMILY SSF51735 6 260 2.08E-83 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 8 261 8.2E-105 T 10-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.7E-41 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 4.0E-63 T 10-10-2018 AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.0E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.0E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_03530 6e9a07a4475a8c3028f3c5df37ffcda8 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.0E-11 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_07315 b860bf2833e694d206b77a8fa376ef85 186 Pfam PF07120 Protein of unknown function (DUF1376) 8 56 7.1E-9 T 10-10-2018 IPR010781 Protein of unknown function DUF1376 AMQ28_05420 c7bf9ee858ca9bcaf2081fe90b28bef3 305 Pfam PF11726 Inovirus Gp2 108 258 3.6E-13 T 10-10-2018 AMQ28_03395 f4ce9220690cd5047352025fc50b8842 179 Gene3D G3DSA:3.90.70.10 12 167 6.6E-8 T 10-10-2018 AMQ28_03395 f4ce9220690cd5047352025fc50b8842 179 Pfam PF03412 Peptidase C39 family 13 68 7.0E-7 T 10-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMQ28_01155 7bd52e9e9cd88271fb892a2b0377303d 286 SUPERFAMILY SSF53474 4 269 2.2E-32 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01155 7bd52e9e9cd88271fb892a2b0377303d 286 Gene3D G3DSA:3.40.50.1820 2 284 8.8E-28 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01155 7bd52e9e9cd88271fb892a2b0377303d 286 Pfam PF12146 Serine aminopeptidase, S33 31 249 3.9E-12 T 10-10-2018 IPR022742 Serine aminopeptidase, S33 AMQ28_01155 7bd52e9e9cd88271fb892a2b0377303d 286 PIRSF PIRSF037442 2 285 6.3E-72 T 10-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 PIRSF PIRSF000303 1 160 4.7E-68 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 10-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 SUPERFAMILY SSF52833 3 158 5.54E-61 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 Gene3D G3DSA:3.40.30.10 1 160 8.1E-71 T 10-10-2018 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 PRINTS PR01011 Glutathione peroxidase family signature 122 131 3.3E-21 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 3.3E-21 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 3.3E-21 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 10-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMQ28_13340 447287faed21239c2dbe2a6145d2aef8 160 Pfam PF00255 Glutathione peroxidase 4 110 6.8E-40 T 10-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMQ28_14050 920262b2114bbcd93743a2755325d92c 485 SUPERFAMILY SSF55073 223 407 2.2E-54 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_14050 920262b2114bbcd93743a2755325d92c 485 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 224 406 2.6E-33 T 10-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMQ28_14050 920262b2114bbcd93743a2755325d92c 485 SMART SM00044 199 388 4.3E-18 T 10-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMQ28_14050 920262b2114bbcd93743a2755325d92c 485 Gene3D G3DSA:3.30.70.1230 218 412 5.3E-63 T 10-10-2018 IPR029787 Nucleotide cyclase AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 304 378 6.3E-7 T 10-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Gene3D G3DSA:3.90.190.20 303 443 4.1E-42 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Pfam PF08245 Mur ligase middle domain 110 282 7.6E-27 T 10-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 SUPERFAMILY SSF53623 98 300 6.93E-51 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Gene3D G3DSA:3.40.1190.10 94 302 3.4E-60 T 10-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 SUPERFAMILY SSF51984 10 93 1.96E-16 T 10-10-2018 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 10 445 6.6E-119 T 10-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 447 33.171 T 10-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 SUPERFAMILY SSF53244 302 447 7.78E-41 T 10-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMQ28_06745 365b1810b4ebd066e02ccfcb496608cb 448 Gene3D G3DSA:3.40.50.720 8 93 7.6E-22 T 10-10-2018 AMQ28_08530 54bf629bcd857c013f28c6221bd6ad7e 125 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 100 1.1E-7 T 10-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMQ28_08530 54bf629bcd857c013f28c6221bd6ad7e 125 SUPERFAMILY SSF69754 1 96 1.96E-11 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMQ28_08530 54bf629bcd857c013f28c6221bd6ad7e 125 Gene3D G3DSA:3.30.160.100 1 103 7.1E-6 T 10-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMQ28_11005 8aad636bc82df0daeccd69e7a4781537 165 Pfam PF06146 Phosphate-starvation-inducible E 58 125 1.8E-17 T 10-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like AMQ28_11005 8aad636bc82df0daeccd69e7a4781537 165 PIRSF PIRSF029598 1 144 1.1E-36 T 10-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AMQ28_02215 21efb3b450950a078e90916c2ca4e698 194 Pfam PF02674 Colicin V production protein 4 141 8.7E-28 T 10-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMQ28_12715 57edece06eb7a92ad1ed486f41725eab 271 Pfam PF05675 Protein of unknown function (DUF817) 9 246 8.3E-82 T 10-10-2018 IPR008535 Protein of unknown function DUF817 AMQ28_12715 57edece06eb7a92ad1ed486f41725eab 271 PIRSF PIRSF009141 1 265 2.1E-72 T 10-10-2018 IPR008535 Protein of unknown function DUF817 AMQ28_07680 602dfae7a198b1d0d70cd64ee823386f 339 Gene3D G3DSA:3.40.50.720 4 275 7.3E-136 T 10-10-2018 AMQ28_07680 602dfae7a198b1d0d70cd64ee823386f 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 336 6.6E-135 T 10-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMQ28_07680 602dfae7a198b1d0d70cd64ee823386f 339 Gene3D G3DSA:3.90.25.10 195 330 7.3E-136 T 10-10-2018 AMQ28_07680 602dfae7a198b1d0d70cd64ee823386f 339 SUPERFAMILY SSF51735 1 338 2.12E-92 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_07680 602dfae7a198b1d0d70cd64ee823386f 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 325 8.5E-53 T 10-10-2018 IPR016040 NAD(P)-binding domain AMQ28_03500 ece6957e3d9a5215bd652b7fb894c22e 147 Gene3D G3DSA:3.90.1170.40 1 142 5.5E-45 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_03500 ece6957e3d9a5215bd652b7fb894c22e 147 Pfam PF02391 MoaE protein 6 118 6.6E-35 T 10-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_03500 ece6957e3d9a5215bd652b7fb894c22e 147 SUPERFAMILY SSF54690 5 137 1.96E-41 T 10-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMQ28_03160 de3447e62ecaeaa8c6124ee73a87e2c6 258 Pfam PF00588 SpoU rRNA Methylase family 116 250 2.1E-31 T 10-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMQ28_03160 de3447e62ecaeaa8c6124ee73a87e2c6 258 SUPERFAMILY SSF55315 5 104 7.65E-16 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like AMQ28_03160 de3447e62ecaeaa8c6124ee73a87e2c6 258 SUPERFAMILY SSF75217 111 258 9.81E-36 T 10-10-2018 IPR029028 Alpha/beta knot methyltransferases AMQ28_03160 de3447e62ecaeaa8c6124ee73a87e2c6 258 Gene3D G3DSA:3.40.1280.10 112 258 1.7E-45 T 10-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMQ28_03160 de3447e62ecaeaa8c6124ee73a87e2c6 258 Gene3D G3DSA:3.30.1330.30 5 105 5.2E-9 T 10-10-2018 IPR029064 50S ribosomal protein L30e-like AMQ28_09995 54b9021a0da2f9fb287c9461d7d875d7 138 Gene3D G3DSA:2.60.40.2020 43 135 4.2E-21 T 10-10-2018 IPR036331 Chagasin-like superfamily AMQ28_09995 54b9021a0da2f9fb287c9461d7d875d7 138 Pfam PF09394 Chagasin family peptidase inhibitor I42 45 126 2.1E-16 T 10-10-2018 IPR018990 Proteinase inhibitor I42, chagasin AMQ28_09995 54b9021a0da2f9fb287c9461d7d875d7 138 SUPERFAMILY SSF141066 37 128 5.1E-19 T 10-10-2018 IPR036331 Chagasin-like superfamily AMQ28_08155 471e7b8db5b6c0f460227cbc20124af5 396 Pfam PF07690 Major Facilitator Superfamily 22 330 3.5E-27 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_08155 471e7b8db5b6c0f460227cbc20124af5 396 SUPERFAMILY SSF103473 11 389 7.72E-50 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_08155 471e7b8db5b6c0f460227cbc20124af5 396 Gene3D G3DSA:1.20.1250.20 12 389 1.0E-36 T 10-10-2018 AMQ28_00470 1c57f8748330eb46d0310e9856820578 398 Pfam PF07690 Major Facilitator Superfamily 28 356 3.7E-50 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00470 1c57f8748330eb46d0310e9856820578 398 Gene3D G3DSA:1.20.1250.20 12 388 2.9E-55 T 10-10-2018 AMQ28_00470 1c57f8748330eb46d0310e9856820578 398 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_00470 1c57f8748330eb46d0310e9856820578 398 SUPERFAMILY SSF103473 13 393 1.2E-62 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 SUPERFAMILY SSF46689 5 79 6.16E-17 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 Pfam PF08362 YcdC-like protein, C-terminal region 60 203 6.6E-51 T 10-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 SUPERFAMILY SSF48498 77 203 2.22E-34 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 9.2E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 Gene3D G3DSA:1.10.357.10 60 203 9.3E-44 T 10-10-2018 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.2E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.2E-6 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_08265 8d3e8d16e8e1ba5b2554079e0cd9ece9 204 Gene3D G3DSA:1.10.10.60 8 59 3.5E-18 T 10-10-2018 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 100 129 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 62 82 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 12 32 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 189 210 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 158 176 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PRINTS PR00075 Fatty acid desaturase family 1 signature 232 246 4.0E-33 T 10-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 AMQ28_11045 4884170b739d64894f41cc279f691655 388 Pfam PF00487 Fatty acid desaturase 43 263 6.0E-20 T 10-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMQ28_11045 4884170b739d64894f41cc279f691655 388 PIRSF PIRSF000345 5 363 5.5E-97 T 10-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 654 1.4E-160 T 10-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Pfam PF03958 Bacterial type II/III secretion system short domain 129 185 1.7E-7 T 10-10-2018 IPR005644 NolW-like AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Pfam PF03958 Bacterial type II/III secretion system short domain 268 392 1.9E-13 T 10-10-2018 IPR005644 NolW-like AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Pfam PF03958 Bacterial type II/III secretion system short domain 193 261 4.6E-12 T 10-10-2018 IPR005644 NolW-like AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Gene3D G3DSA:3.30.1370.120 191 258 8.4E-15 T 10-10-2018 IPR038591 NolW-like superfamily AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Gene3D G3DSA:3.30.1370.120 24 186 3.1E-52 T 10-10-2018 IPR038591 NolW-like superfamily AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 Pfam PF00263 Bacterial type II and III secretion system protein 482 644 3.2E-48 T 10-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 PRINTS PR00811 Bacterial general secretion pathway protein D signature 513 523 2.5E-32 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 PRINTS PR00811 Bacterial general secretion pathway protein D signature 609 627 2.5E-32 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 PRINTS PR00811 Bacterial general secretion pathway protein D signature 478 502 2.5E-32 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 PRINTS PR00811 Bacterial general secretion pathway protein D signature 392 402 2.5E-32 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_09350 3544c3bcdb0a7f62bfdeb2f81ebb76a1 755 PRINTS PR00811 Bacterial general secretion pathway protein D signature 632 646 2.5E-32 T 10-10-2018 IPR001775 GspD/PilQ family AMQ28_10630 8ecf3b60d21bd05683f593f692e3cf22 125 SUPERFAMILY SSF47175 24 122 4.36E-13 T 10-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AMQ28_10630 8ecf3b60d21bd05683f593f692e3cf22 125 Pfam PF07361 Cytochrome b562 25 121 6.4E-15 T 10-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 AMQ28_10630 8ecf3b60d21bd05683f593f692e3cf22 125 Gene3D G3DSA:1.20.120.10 24 123 4.4E-24 T 10-10-2018 AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 Pfam PF03602 Conserved hypothetical protein 95 5 180 3.0E-50 T 10-10-2018 AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 SUPERFAMILY SSF53335 5 180 5.02E-42 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 182 2.7E-50 T 10-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 PIRSF PIRSF004553 4 184 5.7E-44 T 10-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMQ28_12385 8e6f9ce8bf4014f2e8495fcb78d92818 185 Gene3D G3DSA:3.40.50.150 1 185 2.3E-50 T 10-10-2018 AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 4 226 39.63 T 10-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 226 3.3E-65 T 10-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 Gene3D G3DSA:3.90.550.10 1 229 6.1E-68 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 227 1.3E-64 T 10-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 SUPERFAMILY SSF53448 5 227 6.08E-49 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_14260 0878189eac99bb2424b7118b6e7d9ce5 230 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 102 109 - T 10-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMQ28_04890 d5ed13a6737b93519def21f47dfb99bc 149 SUPERFAMILY SSF53098 48 121 6.07E-6 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_04890 d5ed13a6737b93519def21f47dfb99bc 149 Gene3D G3DSA:3.30.420.470 5 136 1.8E-16 T 10-10-2018 AMQ28_04890 d5ed13a6737b93519def21f47dfb99bc 149 Pfam PF13358 DDE superfamily endonuclease 3 121 2.0E-28 T 10-10-2018 IPR038717 Tc1-like transposase, DDE domain AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 Gene3D G3DSA:3.40.50.1820 2 286 6.9E-65 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 Pfam PF00561 alpha/beta hydrolase fold 35 272 2.2E-20 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 SUPERFAMILY SSF53474 9 286 6.71E-57 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 3.7E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 3.7E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_03585 c27092a98f272dacf8f1b39178a68545 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.7E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_08190 ee8f12c26993b21755749ae6486158e5 375 Gene3D G3DSA:3.30.420.40 11 370 2.6E-123 T 10-10-2018 AMQ28_08190 ee8f12c26993b21755749ae6486158e5 375 SUPERFAMILY SSF53067 4 347 6.61E-24 T 10-10-2018 AMQ28_08190 ee8f12c26993b21755749ae6486158e5 375 Gene3D G3DSA:3.30.420.40 140 335 2.6E-123 T 10-10-2018 AMQ28_08190 ee8f12c26993b21755749ae6486158e5 375 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 373 4.7E-132 T 10-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMQ28_08190 ee8f12c26993b21755749ae6486158e5 375 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 375 39.492 T 10-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 10-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 SUPERFAMILY SSF52402 1 242 7.67E-82 T 10-10-2018 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 4.1E-44 T 10-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 PIRSF PIRSF000090 1 249 1.1E-81 T 10-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 SMART SM00893 23 211 1.1E-65 T 10-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMQ28_03300 2bffa5496446fdb7d67d476226e07a34 249 Gene3D G3DSA:3.40.50.620 1 247 1.7E-83 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_02995 f9a11d07c55535a20181ab44b3cf7ad8 201 SUPERFAMILY SSF53474 2 179 1.43E-33 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_02995 f9a11d07c55535a20181ab44b3cf7ad8 201 Pfam PF06821 Serine hydrolase 4 178 6.7E-55 T 10-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMQ28_02995 f9a11d07c55535a20181ab44b3cf7ad8 201 Gene3D G3DSA:3.40.50.1820 1 182 2.9E-49 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01700 54068e5c48888c75a32c3d2faf9b1cd5 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 9.1E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_01700 54068e5c48888c75a32c3d2faf9b1cd5 204 SUPERFAMILY SSF46689 3 73 5.82E-14 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_01700 54068e5c48888c75a32c3d2faf9b1cd5 204 Gene3D G3DSA:1.10.357.10 1 187 3.4E-18 T 10-10-2018 AMQ28_01700 54068e5c48888c75a32c3d2faf9b1cd5 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 2.5E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_01700 54068e5c48888c75a32c3d2faf9b1cd5 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 2.5E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07740 d26c8d9aeec9afa41f12fbd173e1c929 362 Pfam PF13439 Glycosyltransferase Family 4 13 165 9.6E-17 T 10-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMQ28_07740 d26c8d9aeec9afa41f12fbd173e1c929 362 Pfam PF00534 Glycosyl transferases group 1 177 329 3.0E-37 T 10-10-2018 IPR001296 Glycosyl transferase, family 1 AMQ28_07740 d26c8d9aeec9afa41f12fbd173e1c929 362 Gene3D G3DSA:3.40.50.2000 22 360 2.7E-75 T 10-10-2018 AMQ28_07740 d26c8d9aeec9afa41f12fbd173e1c929 362 Gene3D G3DSA:3.40.50.2000 163 347 2.7E-75 T 10-10-2018 AMQ28_07740 d26c8d9aeec9afa41f12fbd173e1c929 362 SUPERFAMILY SSF53756 3 361 4.71E-80 T 10-10-2018 AMQ28_08850 4660f4071f4e97b670c7d95ccc1f55d4 105 Gene3D G3DSA:1.10.10.10 1 59 2.8E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_08850 4660f4071f4e97b670c7d95ccc1f55d4 105 Pfam PF01527 Transposase 4 85 1.2E-6 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_08850 4660f4071f4e97b670c7d95ccc1f55d4 105 SUPERFAMILY SSF46689 1 97 4.12E-18 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 10-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 SUPERFAMILY SSF56808 6 226 2.35E-77 T 10-10-2018 IPR023674 Ribosomal protein L1-like AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.3E-98 T 10-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.594 T 10-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 Pfam PF00687 Ribosomal protein L1p/L10e family 36 220 3.1E-48 T 10-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 PIRSF PIRSF002155 1 227 4.8E-73 T 10-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 Gene3D G3DSA:3.40.50.790 68 159 2.3E-74 T 10-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMQ28_09410 08d9c4782560351fdcb0a032c5720971 231 Gene3D G3DSA:3.30.190.20 21 225 2.3E-74 T 10-10-2018 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.6E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.6E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 Gene3D G3DSA:1.10.357.10 2 206 9.2E-35 T 10-10-2018 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 2.7E-11 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 SUPERFAMILY SSF46689 7 82 4.39E-16 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07870 2153466df896a4bdd6b7e6003c17c13a 209 SUPERFAMILY SSF48498 109 175 1.17E-5 T 10-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMQ28_03190 d528549f1f97cff6fa02311886656797 234 Gene3D G3DSA:3.40.50.300 1 158 5.5E-24 T 10-10-2018 AMQ28_03190 d528549f1f97cff6fa02311886656797 234 Pfam PF00308 Bacterial dnaA protein 35 193 8.9E-12 T 10-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMQ28_03190 d528549f1f97cff6fa02311886656797 234 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 3 227 1.1E-60 T 10-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 AMQ28_03190 d528549f1f97cff6fa02311886656797 234 SUPERFAMILY SSF52540 34 207 2.18E-18 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 Gene3D G3DSA:3.50.50.60 5 347 1.1E-94 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 Gene3D G3DSA:3.30.9.50 84 278 1.1E-94 T 10-10-2018 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 SUPERFAMILY SSF51905 4 392 9.5E-53 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 Pfam PF01494 FAD binding domain 4 357 1.6E-36 T 10-10-2018 IPR002938 FAD-binding domain GO:0071949 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 4.2E-19 T 10-10-2018 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 4.2E-19 T 10-10-2018 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 4.2E-19 T 10-10-2018 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 4.2E-19 T 10-10-2018 AMQ28_12525 68a2c3f8149419ddc867028271f6cc29 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 399 6.3E-108 T 10-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 1.8E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 1.8E-6 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 SMART SM00342 248 330 8.5E-23 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 Pfam PF12833 Helix-turn-helix domain 255 331 2.1E-16 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 SUPERFAMILY SSF46689 283 331 3.45E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 3.5E-44 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_04725 88bd65639c58351e1fab5f4a6288d23f 336 Gene3D G3DSA:1.10.10.60 227 334 1.6E-25 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 Gene3D G3DSA:3.30.1490.300 89 148 2.6E-87 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 SUPERFAMILY SSF53067 12 177 5.83E-12 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 SUPERFAMILY SSF53067 194 349 3.34E-24 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 Gene3D G3DSA:3.30.420.40 189 316 2.6E-87 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 Gene3D G3DSA:3.30.420.40 13 350 2.6E-87 T 10-10-2018 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 SMART SM00842 12 180 5.9E-4 T 10-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 Pfam PF11104 Type IV pilus assembly protein PilM; 14 352 7.1E-134 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 PIRSF PIRSF019169 2 353 3.6E-124 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM AMQ28_09720 a6e047d3e31807c2086b9f271e35fd9f 353 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 12 352 6.7E-114 T 10-10-2018 IPR005883 Type IV pilus assembly protein PilM AMQ28_04410 f009b73924023432a05ac06b850602ab 373 SUPERFAMILY SSF51905 1 366 7.38E-43 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_04410 f009b73924023432a05ac06b850602ab 373 Gene3D G3DSA:3.50.50.60 4 348 6.0E-76 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_04410 f009b73924023432a05ac06b850602ab 373 Gene3D G3DSA:3.30.9.10 88 307 6.0E-76 T 10-10-2018 AMQ28_04410 f009b73924023432a05ac06b850602ab 373 SUPERFAMILY SSF54373 221 306 4.05E-20 T 10-10-2018 AMQ28_04410 f009b73924023432a05ac06b850602ab 373 Pfam PF01266 FAD dependent oxidoreductase 2 346 3.9E-57 T 10-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMQ28_13335 52e8d763f6fd38595bba3e380352511f 139 Pfam PF01641 SelR domain 10 128 2.1E-55 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMQ28_13335 52e8d763f6fd38595bba3e380352511f 139 SUPERFAMILY SSF51316 5 138 4.97E-59 T 10-10-2018 IPR011057 Mss4-like superfamily AMQ28_13335 52e8d763f6fd38595bba3e380352511f 139 Gene3D G3DSA:2.170.150.20 2 139 2.4E-62 T 10-10-2018 AMQ28_13335 52e8d763f6fd38595bba3e380352511f 139 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 36.569 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMQ28_13335 52e8d763f6fd38595bba3e380352511f 139 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 138 1.0E-57 T 10-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMQ28_05005 b1dd9b706344494afc8e5c90cbabf599 105 Gene3D G3DSA:1.20.1250.20 1 102 2.0E-7 T 10-10-2018 AMQ28_05005 b1dd9b706344494afc8e5c90cbabf599 105 SUPERFAMILY SSF103473 4 100 6.93E-7 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04500 3910bbb2dbf1972769800e97fa5c9c98 211 Gene3D G3DSA:3.40.50.2020 2 207 1.6E-70 T 10-10-2018 AMQ28_04500 3910bbb2dbf1972769800e97fa5c9c98 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.417 T 10-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMQ28_04500 3910bbb2dbf1972769800e97fa5c9c98 211 SUPERFAMILY SSF53271 3 206 3.41E-65 T 10-10-2018 IPR029057 Phosphoribosyltransferase-like AMQ28_04500 3910bbb2dbf1972769800e97fa5c9c98 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 2.9E-85 T 10-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMQ28_04500 3910bbb2dbf1972769800e97fa5c9c98 211 Pfam PF14681 Uracil phosphoribosyltransferase 7 206 1.5E-63 T 10-10-2018 AMQ28_14125 77710cef00aa28df0c4a6b000632486c 205 Pfam PF07290 Protein of unknown function (DUF1449) 11 191 1.2E-19 T 10-10-2018 IPR010840 Protein of unknown function DUF1449 AMQ28_11810 687fad9a51953f650a542489ce3ac9bf 157 Gene3D G3DSA:2.40.50.140 77 156 2.2E-9 T 10-10-2018 AMQ28_11810 687fad9a51953f650a542489ce3ac9bf 157 SUPERFAMILY SSF141322 81 149 5.89E-7 T 10-10-2018 AMQ28_11810 687fad9a51953f650a542489ce3ac9bf 157 Pfam PF01957 NfeD-like C-terminal, partner-binding 9 150 2.5E-15 T 10-10-2018 IPR002810 NfeD-like, C-terminal domain AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 SUPERFAMILY SSF90123 22 342 3.01E-43 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 Gene3D G3DSA:1.20.1560.10 24 349 5.0E-22 T 10-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 Gene3D G3DSA:3.40.50.300 351 611 7.9E-90 T 10-10-2018 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 SUPERFAMILY SSF52540 350 600 2.27E-88 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 Pfam PF00005 ABC transporter 377 530 3.8E-34 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 Pfam PF00664 ABC transporter transmembrane region 41 308 1.9E-12 T 10-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMQ28_00490 e220c52ad2f35caa8f82936bc6493dc1 617 SMART SM00382 385 576 6.8E-20 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_05960 0f7a1fa8b80b4bb200c337eeb2ba7b53 113 Pfam PF04266 ASCH domain 10 83 1.5E-6 T 10-10-2018 IPR007374 ASCH domain AMQ28_05960 0f7a1fa8b80b4bb200c337eeb2ba7b53 113 SUPERFAMILY SSF88697 9 112 1.54E-6 T 10-10-2018 IPR015947 PUA-like superfamily AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 5 92 1.2E-23 T 10-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 86 1.0E-28 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 SMART SM01103 4 87 5.8E-37 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 SUPERFAMILY SSF75471 4 97 1.44E-27 T 10-10-2018 IPR035920 YhbY-like superfamily AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 87 1.1E-20 T 10-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AMQ28_03725 2563c6dd31cc82e8e4b14fbfda233ed8 107 Gene3D G3DSA:3.30.110.60 2 104 1.7E-30 T 10-10-2018 IPR035920 YhbY-like superfamily AMQ28_08225 b68230642ad5883ecd96b2a311d84f6e 396 SUPERFAMILY SSF50952 57 384 5.62E-40 T 10-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMQ28_08225 b68230642ad5883ecd96b2a311d84f6e 396 Pfam PF07995 Glucose / Sorbosone dehydrogenase 63 391 4.5E-121 T 10-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMQ28_08225 b68230642ad5883ecd96b2a311d84f6e 396 Gene3D G3DSA:2.120.10.30 50 395 1.4E-102 T 10-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMQ28_00225 316f260044f56dee8cf5e56bb52decae 127 Pfam PF07007 Lysozyme inhibitor LprI 38 117 3.7E-7 T 10-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMQ28_02225 f361f66104418391db8be77d5b62c25e 159 Pfam PF04612 Type II secretion system (T2SS), protein M 17 158 8.1E-13 T 10-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 AMQ28_02225 f361f66104418391db8be77d5b62c25e 159 SUPERFAMILY SSF103054 92 158 2.75E-5 T 10-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 SUPERFAMILY SSF53850 89 292 7.85E-31 T 10-10-2018 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 Gene3D G3DSA:1.10.10.10 1 92 5.3E-34 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.6E-11 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.6E-11 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.6E-11 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 Pfam PF03466 LysR substrate binding domain 89 288 4.1E-34 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.6E-23 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 Gene3D G3DSA:3.40.190.10 162 267 5.7E-77 T 10-10-2018 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 Gene3D G3DSA:3.40.190.10 93 292 5.7E-77 T 10-10-2018 AMQ28_00635 d8b89510bcb06bc53fe6420fb4293156 304 SUPERFAMILY SSF46785 1 83 2.59E-24 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 Gene3D G3DSA:1.10.3860.10 1 416 2.7E-118 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 SUPERFAMILY SSF118215 6 404 1.57E-110 T 10-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 Pfam PF00375 Sodium:dicarboxylate symporter family 6 403 1.9E-105 T 10-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 4.5E-38 T 10-10-2018 AMQ28_02605 5b05651e74d196e23cce90c74a1b4a97 430 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 4.5E-38 T 10-10-2018 AMQ28_12600 b17ccb39474019723ce5c84d2e5ea749 414 Gene3D G3DSA:3.20.20.70 1 355 3.9E-115 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_12600 b17ccb39474019723ce5c84d2e5ea749 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 9 338 4.9E-55 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_12600 b17ccb39474019723ce5c84d2e5ea749 414 SUPERFAMILY SSF51395 1 345 1.49E-101 T 10-10-2018 AMQ28_05375 0d6840136b2a24bbc74b1d72a893a6a1 1010 Gene3D G3DSA:3.40.50.300 73 283 2.5E-11 T 10-10-2018 AMQ28_05375 0d6840136b2a24bbc74b1d72a893a6a1 1010 Pfam PF04851 Type III restriction enzyme, res subunit 11 261 1.7E-14 T 10-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMQ28_05375 0d6840136b2a24bbc74b1d72a893a6a1 1010 SUPERFAMILY SSF52540 92 593 9.4E-10 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05375 0d6840136b2a24bbc74b1d72a893a6a1 1010 Gene3D G3DSA:3.40.50.300 440 622 2.9E-8 T 10-10-2018 AMQ28_05375 0d6840136b2a24bbc74b1d72a893a6a1 1010 SUPERFAMILY SSF52540 91 291 1.64E-14 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 Gene3D G3DSA:3.30.1420.10 1 30 8.4E-7 T 10-10-2018 AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 PIRSF PIRSF006223 1 103 2.6E-20 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 SUPERFAMILY SSF69721 2 103 3.01E-27 T 10-10-2018 IPR025526 DsrC-like domain superfamily AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 Pfam PF04358 DsrC like protein 2 103 5.2E-26 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 103 3.1E-24 T 10-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE AMQ28_00330 8bf3229da97cf3c211406335b0fff1e3 103 Gene3D G3DSA:1.10.10.370 33 103 1.0E-17 T 10-10-2018 AMQ28_11260 2cf1a939f50069cc494138e985886402 148 Gene3D G3DSA:2.40.128.520 21 148 1.2E-16 T 10-10-2018 AMQ28_11260 2cf1a939f50069cc494138e985886402 148 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 146 5.3E-25 T 10-10-2018 IPR019223 Domain of unknown function DUF2147 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 Gene3D G3DSA:2.30.130.10 275 377 5.2E-30 T 10-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 Gene3D G3DSA:3.40.1160.10 5 274 6.7E-94 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 SUPERFAMILY SSF53633 15 265 1.57E-72 T 10-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 268 35.741 T 10-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 ProSitePatterns PS00902 Glutamate 5-kinase signature. 216 233 - T 10-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PIRSF PIRSF000729 10 377 3.1E-130 T 10-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 Pfam PF00696 Amino acid kinase family 15 244 1.3E-47 T 10-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 375 3.7E-128 T 10-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 SUPERFAMILY SSF88697 286 376 1.24E-19 T 10-10-2018 IPR015947 PUA-like superfamily AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 SMART SM00359 286 360 3.0E-15 T 10-10-2018 IPR002478 PUA domain GO:0003723 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 6.8E-48 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 6.8E-48 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 6.8E-48 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 6.8E-48 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 6.8E-48 T 10-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMQ28_02820 0fcc2bb352055e783e404d1fa16667b1 377 Pfam PF01472 PUA domain 286 360 1.8E-20 T 10-10-2018 IPR002478 PUA domain GO:0003723 AMQ28_01795 d5b0d58ac41b67df5e4b4b6750cd8277 154 SUPERFAMILY SSF52540 30 128 6.99E-19 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_01795 d5b0d58ac41b67df5e4b4b6750cd8277 154 Gene3D G3DSA:3.40.50.300 3 153 1.1E-39 T 10-10-2018 AMQ28_01795 d5b0d58ac41b67df5e4b4b6750cd8277 154 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 133 2.0E-40 T 10-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMQ28_01795 d5b0d58ac41b67df5e4b4b6750cd8277 154 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 131 1.5E-36 T 10-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMQ28_04025 a06daa0dbe78bae73cfccedb25f8c101 400 TIGRFAM TIGR00937 2A51: chromate efflux transporter 13 390 1.7E-77 T 10-10-2018 IPR014047 Chromate transporter, long chain AMQ28_04025 a06daa0dbe78bae73cfccedb25f8c101 400 PIRSF PIRSF004810 3 398 6.8E-93 T 10-10-2018 IPR014047 Chromate transporter, long chain AMQ28_04025 a06daa0dbe78bae73cfccedb25f8c101 400 Pfam PF02417 Chromate transporter 229 389 8.5E-29 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMQ28_04025 a06daa0dbe78bae73cfccedb25f8c101 400 Pfam PF02417 Chromate transporter 9 173 3.2E-33 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMQ28_08730 2a762da0e196efdc95d7844282137f7b 193 Pfam PF05656 Protein of unknown function (DUF805) 25 140 1.2E-14 T 10-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AMQ28_01910 301f044db2a5f0ea0f507e1cd4d92fbb 347 Gene3D G3DSA:3.20.20.70 1 345 2.1E-100 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01910 301f044db2a5f0ea0f507e1cd4d92fbb 347 Pfam PF03060 Nitronate monooxygenase 4 342 7.3E-72 T 10-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMQ28_01910 301f044db2a5f0ea0f507e1cd4d92fbb 347 SUPERFAMILY SSF51412 2 338 1.53E-56 T 10-10-2018 AMQ28_13405 507ed000ac61559577ab53675d9f91f7 187 SUPERFAMILY SSF69593 14 143 8.5E-16 T 10-10-2018 AMQ28_13405 507ed000ac61559577ab53675d9f91f7 187 Pfam PF01553 Acyltransferase 21 139 1.7E-12 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_13405 507ed000ac61559577ab53675d9f91f7 187 SMART SM00563 30 146 1.5E-17 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_02600 b5b7dcd827b7a18112f4a275184991bc 262 ProDom PD121987 PLASMID RESISTANT TELLURIUM KLAA KLAA/KILA MAINTENANCE RESISTANCE KILA TELLURITE 64 257 2.0E-69 T 10-10-2018 AMQ28_04050 fd3f38ff79659b85fea10215efc46ff2 724 SUPERFAMILY SSF103473 385 536 6.67E-5 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04050 fd3f38ff79659b85fea10215efc46ff2 724 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 708 6.4E-226 T 10-10-2018 IPR010020 Integral membrane protein, YccS/YhfK AMQ28_04050 fd3f38ff79659b85fea10215efc46ff2 724 Pfam PF12805 FUSC-like inner membrane protein yccS 68 349 4.5E-88 T 10-10-2018 IPR032692 Integral membrane protein YccS, N-terminal AMQ28_04050 fd3f38ff79659b85fea10215efc46ff2 724 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 708 2.9E-248 T 10-10-2018 IPR010019 Integral membrane protein, YccS AMQ28_04050 fd3f38ff79659b85fea10215efc46ff2 724 Pfam PF13515 Fusaric acid resistance protein-like 411 530 1.1E-20 T 10-10-2018 AMQ28_06555 e02eddacdf24d1e36d62ded79bca1e54 173 PIRSF PIRSF019239 7 170 7.7E-43 T 10-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMQ28_06555 e02eddacdf24d1e36d62ded79bca1e54 173 Pfam PF01899 Na+/H+ ion antiporter subunit 18 163 8.3E-34 T 10-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMQ28_07425 f89abdc2fed58ab377d643a8772333d7 210 Pfam PF00665 Integrase core domain 46 156 5.2E-26 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_07425 f89abdc2fed58ab377d643a8772333d7 210 SUPERFAMILY SSF53098 46 204 8.22E-47 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_07425 f89abdc2fed58ab377d643a8772333d7 210 Gene3D G3DSA:3.30.420.10 42 189 7.0E-19 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_04130 a1ea41c7af2e224714d10516bf4b2513 49 Pfam PF08085 Entericidin EcnA/B family 19 39 1.3E-9 T 10-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AMQ28_04225 f7e5b87fa0af11384b88493d47645f89 183 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 170 3.5E-29 T 10-10-2018 IPR018639 Domain of unknown function DUF2062 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SUPERFAMILY SSF51717 353 621 8.11E-88 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 TIGRFAM TIGR02082 metH: methionine synthase 12 1194 0.0 T 10-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 941 1210 4.7E-108 T 10-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 PIRSF PIRSF000381 1 1197 0.0 T 10-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:3.20.20.20 337 645 2.2E-130 T 10-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Pfam PF02574 Homocysteine S-methyltransferase 16 322 2.5E-77 T 10-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SUPERFAMILY SSF56507 907 1225 1.44E-113 T 10-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Pfam PF02310 B12 binding domain 749 842 3.5E-18 T 10-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:3.40.50.280 745 897 2.7E-54 T 10-10-2018 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SUPERFAMILY SSF82282 6 396 4.32E-118 T 10-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Pfam PF02607 B12 binding domain 660 733 1.0E-22 T 10-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SUPERFAMILY SSF47644 653 740 1.1E-26 T 10-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SMART SM01018 658 741 3.8E-40 T 10-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:1.10.288.10 939 1094 6.9E-124 T 10-10-2018 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:1.10.1240.10 650 738 1.2E-38 T 10-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:3.10.196.10 914 1224 6.9E-124 T 10-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 SUPERFAMILY SSF52242 744 895 1.83E-43 T 10-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Gene3D G3DSA:3.20.20.330 2 335 2.6E-126 T 10-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMQ28_03915 14b93e6d26a441ef72e4b133ad6b5da3 1230 Pfam PF00809 Pterin binding enzyme 357 595 2.9E-56 T 10-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PIRSF PIRSF001369 3 376 2.5E-120 T 10-10-2018 IPR024176 Citrate synthase, bacterial-type AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 7.3E-117 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 2.0E-159 T 10-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 SUPERFAMILY SSF48256 6 375 1.05E-126 T 10-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 10-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 Gene3D G3DSA:1.10.580.10 32 355 1.4E-123 T 10-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 Gene3D G3DSA:1.10.230.10 224 322 1.4E-123 T 10-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 251 271 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 308 324 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 126 139 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 176 191 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 198 226 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_14225 796884b31821ba5c7ca31754f881af37 378 PRINTS PR00143 Citrate synthase signature 328 342 2.6E-37 T 10-10-2018 IPR002020 Citrate synthase GO:0046912 AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 10 237 7.8E-91 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 Gene3D G3DSA:3.60.15.10 3 243 1.2E-75 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 174 243 1.2E-20 T 10-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 PIRSF PIRSF005457 1 242 1.8E-89 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 5 243 39.306 T 10-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 SUPERFAMILY SSF56281 4 243 1.44E-60 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 SMART SM00849 15 173 3.6E-32 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_02120 8d9fb77b7614d5734f663a6ee16643cf 243 Pfam PF00753 Metallo-beta-lactamase superfamily 49 173 6.2E-14 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_13880 3cb554832c59e0a599cf0336dc923b1b 200 Gene3D G3DSA:1.10.10.10 105 148 3.6E-10 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13880 3cb554832c59e0a599cf0336dc923b1b 200 Gene3D G3DSA:1.10.10.10 149 198 3.8E-15 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13880 3cb554832c59e0a599cf0336dc923b1b 200 Hamap MF_01114 Regulatory protein RecX [recX]. 16 200 12.959 T 10-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMQ28_13880 3cb554832c59e0a599cf0336dc923b1b 200 Pfam PF02631 RecX family 86 197 1.6E-26 T 10-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMQ28_06380 2f7c2c1013f1d31fec90c7f5957e2514 208 PIRSF PIRSF029557 9 205 1.2E-41 T 10-10-2018 IPR010707 Protein of unknown function DUF1285 AMQ28_06380 2f7c2c1013f1d31fec90c7f5957e2514 208 Pfam PF06938 Protein of unknown function (DUF1285) 56 201 3.0E-47 T 10-10-2018 IPR010707 Protein of unknown function DUF1285 AMQ28_06380 2f7c2c1013f1d31fec90c7f5957e2514 208 Gene3D G3DSA:2.30.270.10 107 179 1.5E-13 T 10-10-2018 IPR023361 DUF1285, beta-roll domain superfamily AMQ28_06380 2f7c2c1013f1d31fec90c7f5957e2514 208 Gene3D G3DSA:3.10.540.10 14 106 5.0E-32 T 10-10-2018 AMQ28_06045 1aef89158c2b432489124c573f150189 322 SMART SM00870 4 316 2.0E-18 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 Gene3D G3DSA:3.40.50.40 212 320 4.8E-13 T 10-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 Pfam PF00710 Asparaginase, N-terminal 4 184 1.1E-33 T 10-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 PIRSF PIRSF500176 1 321 1.2E-42 T 10-10-2018 AMQ28_06045 1aef89158c2b432489124c573f150189 322 SUPERFAMILY SSF53774 1 320 2.75E-58 T 10-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 PIRSF PIRSF001220 1 320 4.8E-32 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 PRINTS PR00139 Asparaginase/glutaminase family signature 78 96 1.2E-6 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 PRINTS PR00139 Asparaginase/glutaminase family signature 5 16 1.2E-6 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 PRINTS PR00139 Asparaginase/glutaminase family signature 254 272 1.2E-6 T 10-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AMQ28_06045 1aef89158c2b432489124c573f150189 322 Gene3D G3DSA:3.40.50.1170 2 204 1.3E-36 T 10-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 AMQ28_01120 e1d7f45ea68b51df31d25a4eb89db828 302 Gene3D G3DSA:3.40.50.1820 2 300 9.7E-35 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01120 e1d7f45ea68b51df31d25a4eb89db828 302 SUPERFAMILY SSF53474 8 299 1.03E-35 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01120 e1d7f45ea68b51df31d25a4eb89db828 302 Pfam PF00561 alpha/beta hydrolase fold 21 287 2.1E-13 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_13525 89cee221cd31d45f04de250635cd10df 393 Gene3D G3DSA:3.30.450.40 25 206 1.8E-37 T 10-10-2018 IPR029016 GAF-like domain superfamily AMQ28_13525 89cee221cd31d45f04de250635cd10df 393 SUPERFAMILY SSF46894 223 284 2.83E-5 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_14085 03e9b8cc9872ca0480cf8e3f2e69de3e 157 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 6.2E-47 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type AMQ28_14085 03e9b8cc9872ca0480cf8e3f2e69de3e 157 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 10-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMQ28_14085 03e9b8cc9872ca0480cf8e3f2e69de3e 157 SUPERFAMILY SSF46785 2 132 1.19E-38 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_14085 03e9b8cc9872ca0480cf8e3f2e69de3e 157 Pfam PF02082 Transcriptional regulator 1 83 1.6E-30 T 10-10-2018 IPR000944 Transcription regulator Rrf2-type AMQ28_14085 03e9b8cc9872ca0480cf8e3f2e69de3e 157 Gene3D G3DSA:1.10.10.10 1 144 1.7E-53 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_00400 455dc23b2b587a53f59229e8ad1767c7 183 Pfam PF00565 Staphylococcal nuclease homologue 70 168 1.5E-28 T 10-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMQ28_00400 455dc23b2b587a53f59229e8ad1767c7 183 SMART SM00318 42 169 1.2E-36 T 10-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMQ28_00400 455dc23b2b587a53f59229e8ad1767c7 183 SUPERFAMILY SSF50199 38 173 1.7E-36 T 10-10-2018 AMQ28_00400 455dc23b2b587a53f59229e8ad1767c7 183 Gene3D G3DSA:2.40.50.90 37 172 8.9E-33 T 10-10-2018 IPR035437 SNase-like, OB-fold superfamily AMQ28_00400 455dc23b2b587a53f59229e8ad1767c7 183 ProSitePatterns PS01284 Thermonuclease family signature 2. 110 120 - T 10-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 AMQ28_01290 114ad4dd08f42c8ba2011d6b89f5487d 242 SUPERFAMILY SSF69572 2 240 5.76E-77 T 10-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMQ28_01290 114ad4dd08f42c8ba2011d6b89f5487d 242 Gene3D G3DSA:3.40.50.720 1 242 1.3E-78 T 10-10-2018 AMQ28_01290 114ad4dd08f42c8ba2011d6b89f5487d 242 Pfam PF00899 ThiF family 4 238 2.1E-61 T 10-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMQ28_07795 74316145cfae0e6bb5f462f777784630 250 SUPERFAMILY SSF53474 6 212 5.83E-39 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_07795 74316145cfae0e6bb5f462f777784630 250 Gene3D G3DSA:3.40.50.1820 1 244 3.4E-58 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_07795 74316145cfae0e6bb5f462f777784630 250 Pfam PF01738 Dienelactone hydrolase family 22 243 5.4E-45 T 10-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMQ28_10100 cc828c3bf3ffca38f7d8a3e2d022e9f9 337 Gene3D G3DSA:1.20.58.340 261 337 3.9E-14 T 10-10-2018 AMQ28_10100 cc828c3bf3ffca38f7d8a3e2d022e9f9 337 SUPERFAMILY SSF144083 272 335 1.29E-12 T 10-10-2018 AMQ28_10100 cc828c3bf3ffca38f7d8a3e2d022e9f9 337 Pfam PF01544 CorA-like Mg2+ transporter protein 27 332 2.1E-52 T 10-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMQ28_10100 cc828c3bf3ffca38f7d8a3e2d022e9f9 337 SUPERFAMILY SSF143865 2 274 1.31E-36 T 10-10-2018 AMQ28_07925 057d005fa8096c3c84e97d02eed391fd 269 Pfam PF02535 ZIP Zinc transporter 112 260 1.5E-18 T 10-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMQ28_07925 057d005fa8096c3c84e97d02eed391fd 269 Hamap MF_00548 Zinc transporter ZupT [zupT]. 9 266 31.659 T 10-10-2018 IPR023498 Zinc transporter ZupT AMQ28_05190 061aeeb51067a112724e91bc41ca8230 307 PRINTS PR01805 VacJ lipoprotein signature 82 95 9.1E-18 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMQ28_05190 061aeeb51067a112724e91bc41ca8230 307 PRINTS PR01805 VacJ lipoprotein signature 150 167 9.1E-18 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMQ28_05190 061aeeb51067a112724e91bc41ca8230 307 PRINTS PR01805 VacJ lipoprotein signature 185 202 9.1E-18 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMQ28_05190 061aeeb51067a112724e91bc41ca8230 307 PRINTS PR01805 VacJ lipoprotein signature 99 115 9.1E-18 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMQ28_05190 061aeeb51067a112724e91bc41ca8230 307 Pfam PF04333 MlaA lipoprotein 81 271 1.6E-60 T 10-10-2018 IPR007428 MlaA lipoprotein GO:0016020 AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 188 4.1E-42 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 Gene3D G3DSA:3.90.950.10 2 194 6.8E-50 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 PIRSF PIRSF006305 1 194 7.5E-39 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 Hamap MF_00528 Septum formation protein Maf [maf]. 3 194 22.169 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 SUPERFAMILY SSF52972 2 189 9.81E-48 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_13935 47e15ab2a7de5b80b024968a673bd03e 195 Pfam PF02545 Maf-like protein 3 189 5.2E-38 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 Pfam PF13533 Biotin-lipoyl like 68 100 4.8E-7 T 10-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 ProSitePatterns PS00543 HlyD family secretion proteins signature. 361 383 - T 10-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 SUPERFAMILY SSF111369 71 157 1.03E-5 T 10-10-2018 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 Pfam PF13437 HlyD family secretion protein 246 363 1.0E-16 T 10-10-2018 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 SUPERFAMILY SSF56954 152 214 3.53E-5 T 10-10-2018 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 376 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 376 396 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 291 315 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 258 279 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_13680 37d6ff400aac9b1f4917f737162a5db6 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 315 338 1.2E-37 T 10-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMQ28_10395 b94e49c16d466cd5b17a35b10fd045b3 433 SUPERFAMILY SSF55961 78 197 5.97E-7 T 10-10-2018 AMQ28_10395 b94e49c16d466cd5b17a35b10fd045b3 433 Gene3D G3DSA:3.30.530.20 79 211 9.6E-6 T 10-10-2018 IPR023393 START-like domain superfamily AMQ28_05690 5091d4804d2f67cf836030deffa5120f 178 SUPERFAMILY SSF158710 31 174 3.01E-35 T 10-10-2018 IPR023153 PSPTO4464-like domain superfamily AMQ28_05690 5091d4804d2f67cf836030deffa5120f 178 Gene3D G3DSA:1.10.60.30 30 103 2.7E-19 T 10-10-2018 AMQ28_05690 5091d4804d2f67cf836030deffa5120f 178 Gene3D G3DSA:1.10.60.30 104 174 7.1E-8 T 10-10-2018 AMQ28_05690 5091d4804d2f67cf836030deffa5120f 178 PIRSF PIRSF016183 3 178 9.3E-43 T 10-10-2018 IPR006839 Ribosome-associated, YjgA AMQ28_05690 5091d4804d2f67cf836030deffa5120f 178 Pfam PF04751 Protein of unknown function (DUF615) 20 169 2.2E-32 T 10-10-2018 IPR006839 Ribosome-associated, YjgA AMQ28_02420 404dc891832763777c33c21386e93807 192 Gene3D G3DSA:3.30.420.10 1 191 7.8E-76 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_02420 404dc891832763777c33c21386e93807 192 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 182 37.482 T 10-10-2018 IPR022898 Ribonuclease HII GO:0004523 AMQ28_02420 404dc891832763777c33c21386e93807 192 SUPERFAMILY SSF53098 3 187 1.18E-67 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_02420 404dc891832763777c33c21386e93807 192 Pfam PF01351 Ribonuclease HII 4 181 2.8E-41 T 10-10-2018 IPR024567 Ribonuclease HII/HIII domain AMQ28_07450 a4a34b6245f52f4d77e76498f07548af 130 SUPERFAMILY SSF55729 56 126 1.6E-15 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_07450 a4a34b6245f52f4d77e76498f07548af 130 Pfam PF00583 Acetyltransferase (GNAT) family 56 104 9.7E-9 T 10-10-2018 IPR000182 GNAT domain AMQ28_07450 a4a34b6245f52f4d77e76498f07548af 130 Gene3D G3DSA:3.40.630.30 5 126 1.9E-14 T 10-10-2018 AMQ28_07710 d77b5cf9333f7614f325f6506aacace2 202 Gene3D G3DSA:3.40.630.30 1 175 1.1E-32 T 10-10-2018 AMQ28_07710 d77b5cf9333f7614f325f6506aacace2 202 SUPERFAMILY SSF55729 2 168 1.34E-30 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_07710 d77b5cf9333f7614f325f6506aacace2 202 Pfam PF13302 Acetyltransferase (GNAT) domain 7 143 2.0E-13 T 10-10-2018 IPR000182 GNAT domain AMQ28_14180 bf0433133587fccf54ccadecf162cd3a 226 Gene3D G3DSA:3.30.2010.10 128 218 6.8E-15 T 10-10-2018 AMQ28_14180 bf0433133587fccf54ccadecf162cd3a 226 Pfam PF01863 Protein of unknown function DUF45 18 217 6.9E-43 T 10-10-2018 IPR002725 Protein of unknown function DUF45 AMQ28_11615 41ed35c70c6c19b5375169f7277248bb 126 PIRSF PIRSF020555 1 120 1.2E-29 T 10-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AMQ28_11615 41ed35c70c6c19b5375169f7277248bb 126 Pfam PF16068 Domain of unknown function (DUF4810) 26 111 1.2E-27 T 10-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AMQ28_07820 a6bc982e594308f241f1d048610465cc 187 Pfam PF03352 Methyladenine glycosylase 8 183 2.2E-69 T 10-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMQ28_07820 a6bc982e594308f241f1d048610465cc 187 Gene3D G3DSA:1.10.340.30 3 186 4.8E-73 T 10-10-2018 AMQ28_07820 a6bc982e594308f241f1d048610465cc 187 SUPERFAMILY SSF48150 4 184 1.99E-73 T 10-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMQ28_07820 a6bc982e594308f241f1d048610465cc 187 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 182 6.5E-71 T 10-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 AMQ28_13510 764e51540b9db90f49e05ad42412e12a 206 PIRSF PIRSF006324 1 206 3.2E-41 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_13510 764e51540b9db90f49e05ad42412e12a 206 Pfam PF01810 LysE type translocator 13 204 2.3E-40 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 Pfam PF00072 Response regulator receiver domain 3 112 2.5E-28 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 Gene3D G3DSA:3.40.50.2300 1 123 2.9E-35 T 10-10-2018 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 SMART SM00448 1 112 1.3E-36 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 Gene3D G3DSA:1.10.10.10 124 219 2.0E-26 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 SMART SM00862 145 216 3.4E-23 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.1E-20 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_02540 4d6193483ab16c48779befc7ed92da60 219 SUPERFAMILY SSF52172 1 178 2.64E-37 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 Gene3D G3DSA:3.30.2010.10 64 145 2.3E-8 T 10-10-2018 AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 Pfam PF01435 Peptidase family M48 70 254 5.3E-32 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 SUPERFAMILY SSF48452 303 456 1.05E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 Pfam PF14559 Tetratricopeptide repeat 345 410 1.2E-6 T 10-10-2018 AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 Gene3D G3DSA:1.25.40.10 234 474 5.6E-11 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_02190 41a62604aa0a080353c1e75cff7b8912 478 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 1 476 31.542 T 10-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 10-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 6.7E-27 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 Pfam PF01632 Ribosomal protein L35 2 60 9.0E-25 T 10-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 SUPERFAMILY SSF143034 2 63 1.44E-22 T 10-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.0E-19 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 2.0E-19 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 2.0E-19 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.798 T 10-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMQ28_05640 0454d8dc3221ba0c63bc0d94f967e905 64 Gene3D G3DSA:2.40.50.530 4 63 1.1E-21 T 10-10-2018 AMQ28_02105 1c330ff4f62c565af88eb369cc6a94f6 131 Pfam PF11342 Protein of unknown function (DUF3144) 20 105 4.0E-30 T 10-10-2018 IPR021490 Protein of unknown function DUF3144 AMQ28_10755 155406b1b8c78098bdd61ecf915e340d 514 Pfam PF03235 Protein of unknown function DUF262 23 185 4.4E-23 T 10-10-2018 IPR004919 Domain of unknown function DUF262 AMQ28_04535 c2ef10e4b1ece042401f38539ffad25c 338 Pfam PF00146 NADH dehydrogenase 24 329 5.3E-120 T 10-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04535 c2ef10e4b1ece042401f38539ffad25c 338 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 17 336 24.134 T 10-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04535 c2ef10e4b1ece042401f38539ffad25c 338 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 63 78 - T 10-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04535 c2ef10e4b1ece042401f38539ffad25c 338 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 218 231 - T 10-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_07550 35baf9a28d11a2a9ef4fe13b8381c5a3 289 Pfam PF13737 Transposase DDE domain 2 109 2.9E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_11240 5468a23ea859ddbdced67a550a8d85ec 322 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 320 2.5E-117 T 10-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMQ28_11240 5468a23ea859ddbdced67a550a8d85ec 322 SUPERFAMILY SSF53659 4 321 3.24E-98 T 10-10-2018 AMQ28_11240 5468a23ea859ddbdced67a550a8d85ec 322 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 29 316 2.0E-99 T 10-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMQ28_11240 5468a23ea859ddbdced67a550a8d85ec 322 Gene3D G3DSA:3.40.718.10 1 322 6.3E-114 T 10-10-2018 AMQ28_10160 841eb4ff9b2e629eb6210aa6e937c79a 254 SUPERFAMILY SSF63380 150 252 1.4E-11 T 10-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMQ28_10160 841eb4ff9b2e629eb6210aa6e937c79a 254 Gene3D G3DSA:1.10.490.10 1 149 8.4E-48 T 10-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMQ28_10160 841eb4ff9b2e629eb6210aa6e937c79a 254 SUPERFAMILY SSF46458 1 141 3.66E-34 T 10-10-2018 IPR009050 Globin-like superfamily AMQ28_10160 841eb4ff9b2e629eb6210aa6e937c79a 254 Gene3D G3DSA:2.40.30.10 150 253 2.0E-16 T 10-10-2018 AMQ28_10160 841eb4ff9b2e629eb6210aa6e937c79a 254 Pfam PF00042 Globin 6 101 1.7E-9 T 10-10-2018 IPR000971 Globin GO:0020037 AMQ28_09495 1d68ea9e50fbffe68241a8f16e625f9e 66 Gene3D G3DSA:3.30.1660.10 1 66 2.2E-19 T 10-10-2018 IPR025543 Dodecin-like AMQ28_09495 1d68ea9e50fbffe68241a8f16e625f9e 66 SUPERFAMILY SSF89807 2 66 7.32E-20 T 10-10-2018 IPR036694 Dodecin-like superfamily AMQ28_09495 1d68ea9e50fbffe68241a8f16e625f9e 66 Pfam PF07311 Dodecin 3 66 3.9E-22 T 10-10-2018 IPR009923 Dodecin AMQ28_13155 9eaec09ceb32e49e28b292cbfec62310 401 Pfam PF04233 Phage Mu protein F like protein 49 158 2.3E-24 T 10-10-2018 IPR006528 Phage head morphogenesis domain AMQ28_13155 9eaec09ceb32e49e28b292cbfec62310 401 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 54 160 1.3E-16 T 10-10-2018 IPR006528 Phage head morphogenesis domain AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 10-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 PIRSF PIRSF000103 1 294 1.7E-77 T 10-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 5 291 5.3E-118 T 10-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 Gene3D G3DSA:1.10.1040.10 164 294 4.8E-47 T 10-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 Gene3D G3DSA:3.40.50.720 1 162 3.1E-59 T 10-10-2018 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 291 1.2E-36 T 10-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 1.1E-50 T 10-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 SUPERFAMILY SSF48179 163 291 1.25E-39 T 10-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMQ28_00725 60fc965844fb7f017179b034cabc91e4 297 SUPERFAMILY SSF51735 1 161 7.88E-48 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 SUPERFAMILY SSF56954 4 468 2.75E-89 T 10-10-2018 AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 Gene3D G3DSA:2.20.200.10 105 357 2.3E-104 T 10-10-2018 AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 Pfam PF02321 Outer membrane efflux protein 68 253 4.7E-19 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 Pfam PF02321 Outer membrane efflux protein 282 466 6.6E-29 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 Gene3D G3DSA:1.20.1600.10 58 467 2.3E-104 T 10-10-2018 AMQ28_05870 474c08671c50cf26763ac9f936c0699b 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 467 5.3E-87 T 10-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMQ28_05060 630676dd2726bd3169bf76a9950a4b3d 470 SUPERFAMILY SSF52129 281 400 2.79E-6 T 10-10-2018 IPR029030 Caspase-like domain superfamily AMQ28_05060 630676dd2726bd3169bf76a9950a4b3d 470 Pfam PF01650 Peptidase C13 family 229 436 9.8E-40 T 10-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 AMQ28_05060 630676dd2726bd3169bf76a9950a4b3d 470 Gene3D G3DSA:3.40.50.1460 288 440 2.5E-9 T 10-10-2018 AMQ28_08840 36ebc248102791c5abe34febcbe7d3aa 682 Gene3D G3DSA:1.10.443.10 413 564 1.2E-5 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_08840 36ebc248102791c5abe34febcbe7d3aa 682 SUPERFAMILY SSF56349 467 563 8.83E-9 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1141 20.732 T 10-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 SUPERFAMILY SSF52540 1 1140 4.72E-47 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1132 1.9E-62 T 10-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 Gene3D G3DSA:3.40.50.300 1 259 1.4E-52 T 10-10-2018 AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 SUPERFAMILY SSF57997 649 868 1.53E-8 T 10-10-2018 AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 Gene3D G3DSA:3.40.50.300 926 1147 6.9E-45 T 10-10-2018 AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 PIRSF PIRSF005719 1 1146 9.7E-231 T 10-10-2018 IPR024704 Structural maintenance of chromosomes protein AMQ28_04950 1cd238aceb662338f22f72197a263f04 1151 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1139 6.7E-271 T 10-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMQ28_01285 bc9618e1ba8ece51aa7bd2ecd26e504a 432 SUPERFAMILY SSF56112 79 360 1.81E-24 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_01285 bc9618e1ba8ece51aa7bd2ecd26e504a 432 Pfam PF03109 ABC1 family 99 216 1.0E-32 T 10-10-2018 IPR004147 UbiB domain AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 Gene3D G3DSA:3.40.30.10 3 195 6.0E-60 T 10-10-2018 AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 SUPERFAMILY SSF47616 81 199 7.53E-21 T 10-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 75 1.2E-9 T 10-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 Gene3D G3DSA:1.20.1050.10 83 189 6.0E-60 T 10-10-2018 AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 SUPERFAMILY SSF52833 1 84 2.47E-17 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_02295 9cd6338ab38ce9d7e4d96bd8b5a809f1 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 117 189 1.6E-7 T 10-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 Pfam PF00202 Aminotransferase class-III 35 400 2.5E-78 T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 Gene3D G3DSA:3.40.640.10 72 322 3.7E-175 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 SUPERFAMILY SSF53383 5 430 5.47E-128 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 Gene3D G3DSA:3.90.1150.10 10 424 3.7E-175 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 275 - T 10-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 430 4.7E-188 T 10-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AMQ28_02075 031caf5d7cb99ad0adc3bb775ec984f4 433 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 431 104.604 T 10-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 SUPERFAMILY SSF109755 13 234 7.22E-66 T 10-10-2018 AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 PIRSF PIRSF003107 8 229 1.0E-64 T 10-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 223 1.2E-64 T 10-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 Gene3D G3DSA:1.20.58.220 3 120 1.6E-37 T 10-10-2018 IPR038078 PhoU-like domain superfamily AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 Gene3D G3DSA:1.20.58.220 121 234 6.8E-33 T 10-10-2018 IPR038078 PhoU-like domain superfamily AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 Pfam PF01895 PhoU domain 131 214 2.2E-16 T 10-10-2018 IPR026022 PhoU domain AMQ28_06700 531575fba15b305d2c6a180f82e3798b 239 Pfam PF01895 PhoU domain 28 113 2.4E-17 T 10-10-2018 IPR026022 PhoU domain AMQ28_07580 0d56232ba0b870025d5ffd36cd923f4a 419 Pfam PF13657 HipA N-terminal domain 16 121 1.2E-10 T 10-10-2018 IPR017508 HipA, N-terminal subdomain 1 AMQ28_07580 0d56232ba0b870025d5ffd36cd923f4a 419 Pfam PF07804 HipA-like C-terminal domain 164 383 2.3E-39 T 10-10-2018 IPR012893 HipA-like, C-terminal AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 536 4.4E-240 T 10-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 Gene3D G3DSA:3.40.50.300 1 284 2.1E-123 T 10-10-2018 AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 Gene3D G3DSA:3.40.50.880 286 545 6.1E-100 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 Pfam PF00117 Glutamine amidotransferase class-I 301 536 1.2E-58 T 10-10-2018 IPR017926 Glutamine amidotransferase AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 SUPERFAMILY SSF52540 1 269 1.99E-114 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 SUPERFAMILY SSF52317 289 542 1.81E-83 T 10-10-2018 IPR029062 Class I glutamine amidotransferase-like AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 Pfam PF06418 CTP synthase N-terminus 4 264 2.1E-118 T 10-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMQ28_14240 fdce406f1a93960cce4326b1d8c021fd 545 Hamap MF_01227 CTP synthase [pyrG]. 2 541 49.27 T 10-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMQ28_10620 251c9cc77016c48604fdcad2ebb43960 230 SUPERFAMILY SSF47781 17 92 2.37E-11 T 10-10-2018 IPR010994 RuvA domain 2-like AMQ28_10620 251c9cc77016c48604fdcad2ebb43960 230 TIGRFAM TIGR00608 radc: DNA repair protein RadC 13 227 5.6E-60 T 10-10-2018 IPR001405 Uncharacterised protein family UPF0758 AMQ28_10620 251c9cc77016c48604fdcad2ebb43960 230 Gene3D G3DSA:1.10.150.20 46 90 3.3E-6 T 10-10-2018 AMQ28_10620 251c9cc77016c48604fdcad2ebb43960 230 Gene3D G3DSA:3.40.140.10 103 227 1.7E-34 T 10-10-2018 AMQ28_10620 251c9cc77016c48604fdcad2ebb43960 230 Pfam PF04002 RadC-like JAB domain 109 226 2.5E-33 T 10-10-2018 IPR025657 RadC-like JAB domain AMQ28_07940 63608b14c050532662bcfa74361b06bb 107 Pfam PF12796 Ankyrin repeats (3 copies) 28 100 8.5E-11 T 10-10-2018 IPR020683 Ankyrin repeat-containing domain AMQ28_07940 63608b14c050532662bcfa74361b06bb 107 Gene3D G3DSA:1.25.40.20 9 101 4.6E-18 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMQ28_07940 63608b14c050532662bcfa74361b06bb 107 SMART SM00248 15 45 4600.0 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMQ28_07940 63608b14c050532662bcfa74361b06bb 107 SMART SM00248 49 78 2.0E-5 T 10-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMQ28_07940 63608b14c050532662bcfa74361b06bb 107 SUPERFAMILY SSF48403 21 101 4.97E-18 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMQ28_06005 3d80359a5ec45e200d99a1ab9766ee3f 81 Pfam PF04102 SlyX 16 81 2.4E-16 T 10-10-2018 IPR007236 SlyX AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 Pfam PF13609 Gram-negative porin 10 346 4.9E-28 T 10-10-2018 AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 SUPERFAMILY SSF56935 22 368 1.68E-43 T 10-10-2018 AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 Gene3D G3DSA:2.40.160.10 15 368 1.9E-53 T 10-10-2018 IPR023614 Porin domain superfamily AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 PRINTS PR00184 Neisseria sp. porin signature 52 77 2.0E-6 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 PRINTS PR00184 Neisseria sp. porin signature 322 346 2.0E-6 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 PRINTS PR00184 Neisseria sp. porin signature 147 164 2.0E-6 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 AMQ28_11830 1870edf97e2634f1f55cae3f43375edd 368 PRINTS PR00184 Neisseria sp. porin signature 88 107 2.0E-6 T 10-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 AMQ28_04985 9e996b8f253c9c407888af801ccf0284 269 Pfam PF01578 Cytochrome C assembly protein 8 265 6.4E-22 T 10-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMQ28_13380 53bb94cc6ef7cc7513151ef721dbd6b9 179 Pfam PF06127 Protein of unknown function (DUF962) 1 147 3.7E-25 T 10-10-2018 IPR009305 Protein of unknown function DUF962 AMQ28_08855 72c77013f632f097715c0f13caa51467 595 Gene3D G3DSA:1.10.443.10 248 438 5.3E-8 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_08855 72c77013f632f097715c0f13caa51467 595 SUPERFAMILY SSF56349 261 432 7.06E-10 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_06040 e4751bb94f7f0ab8555986e2266da868 435 Gene3D G3DSA:1.20.58.2200 372 434 3.0E-7 T 10-10-2018 IPR038440 FimV, C-terminal domain superfamily AMQ28_01740 4750c6f0e22f3eb879fe9ba729b86e30 212 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 186 5.5E-35 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 2.0E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.0E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.0E-7 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 Pfam PF00106 short chain dehydrogenase 2 203 4.1E-37 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 4.5E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.5E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.5E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 4.5E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 4.5E-20 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 SUPERFAMILY SSF51735 1 235 1.63E-54 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_13535 3c39cd39f59d5c5e8d0eaf32ffae210b 276 Gene3D G3DSA:3.40.50.720 1 276 6.2E-67 T 10-10-2018 AMQ28_04160 32869f7841be980f1f0b027e4ef4b660 178 SMART SM00260 27 164 3.3E-8 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMQ28_04160 32869f7841be980f1f0b027e4ef4b660 178 SUPERFAMILY SSF50341 23 167 2.62E-29 T 10-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMQ28_04160 32869f7841be980f1f0b027e4ef4b660 178 Gene3D G3DSA:2.30.30.40 34 153 1.3E-20 T 10-10-2018 AMQ28_04160 32869f7841be980f1f0b027e4ef4b660 178 Pfam PF01584 CheW-like domain 33 152 4.9E-23 T 10-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMQ28_04160 32869f7841be980f1f0b027e4ef4b660 178 Gene3D G3DSA:2.40.50.180 50 116 1.3E-20 T 10-10-2018 AMQ28_02645 9093063013ef8432cf79741abebfae96 697 Pfam PF02554 Carbon starvation protein CstA 38 414 1.3E-169 T 10-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AMQ28_02645 9093063013ef8432cf79741abebfae96 697 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 597 2.0E-32 T 10-10-2018 IPR025299 CstA, C-terminal domain AMQ28_07355 9c865efff3f6363c7c2a2bcc61391e20 299 Pfam PF06054 Competence protein CoiA-like family 10 73 1.3E-7 T 10-10-2018 IPR010330 Competence-induced protein CoiA-like AMQ28_11120 878ac97933f2087a07b8f64f42d0ac8e 271 Gene3D G3DSA:3.60.15.10 3 271 2.5E-47 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_11120 878ac97933f2087a07b8f64f42d0ac8e 271 SMART SM00849 31 261 1.1E-13 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_11120 878ac97933f2087a07b8f64f42d0ac8e 271 Pfam PF00753 Metallo-beta-lactamase superfamily 31 219 1.8E-14 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_11120 878ac97933f2087a07b8f64f42d0ac8e 271 SUPERFAMILY SSF56281 31 264 4.19E-28 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 Pfam PF01668 SmpB protein 15 157 7.6E-55 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 SUPERFAMILY SSF74982 9 139 3.79E-48 T 10-10-2018 IPR023620 Small protein B AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 10-10-2018 IPR020081 SsrA-binding protein, conserved site AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 4.0E-53 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 Gene3D G3DSA:2.40.280.10 7 136 2.6E-45 T 10-10-2018 IPR023620 Small protein B AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 156 1.0E-49 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMQ28_12150 1ee457878a7e5a271acbcf21e06002dc 158 Hamap MF_00023 SsrA-binding protein [smpB]. 1 158 66.807 T 10-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMQ28_04895 540cbb8f3b629d205aa6531022d12681 330 Pfam PF00795 Carbon-nitrogen hydrolase 9 275 3.9E-26 T 10-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMQ28_04895 540cbb8f3b629d205aa6531022d12681 330 Gene3D G3DSA:3.60.110.10 7 286 3.7E-38 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_04895 540cbb8f3b629d205aa6531022d12681 330 SUPERFAMILY SSF56317 6 277 2.62E-43 T 10-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMQ28_03005 a76831ef9693bcd7fc1238aa45034a74 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 281 2.6E-18 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_03005 a76831ef9693bcd7fc1238aa45034a74 297 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 24 283 2.3E-98 T 10-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMQ28_03005 a76831ef9693bcd7fc1238aa45034a74 297 SUPERFAMILY SSF161098 25 279 1.28E-54 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_03005 a76831ef9693bcd7fc1238aa45034a74 297 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 26 285 2.3E-127 T 10-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AMQ28_03005 a76831ef9693bcd7fc1238aa45034a74 297 Gene3D G3DSA:1.10.3720.10 27 287 5.3E-62 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 1.3E-23 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 Pfam PF00072 Response regulator receiver domain 10 119 1.7E-24 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 Gene3D G3DSA:3.40.50.2300 1 129 8.2E-36 T 10-10-2018 AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 Gene3D G3DSA:1.10.10.10 130 238 9.3E-41 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 SMART SM00448 8 118 3.0E-38 T 10-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 SMART SM00862 155 231 2.8E-25 T 10-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 SUPERFAMILY SSF52172 8 132 3.84E-37 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_04585 e47d3af88bfab49c6125450f8ce00f60 238 SUPERFAMILY SSF46894 135 232 4.82E-28 T 10-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMQ28_04770 9a22dfed172bfa32d98ed88d7589e85b 456 Pfam PF00860 Permease family 29 420 4.6E-100 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMQ28_04770 9a22dfed172bfa32d98ed88d7589e85b 456 TIGRFAM TIGR03173 pbuX: xanthine permease 33 452 3.2E-128 T 10-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 AMQ28_04770 9a22dfed172bfa32d98ed88d7589e85b 456 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 368 388 - T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMQ28_04770 9a22dfed172bfa32d98ed88d7589e85b 456 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 25 450 1.8E-123 T 10-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AMQ28_06830 189ef76e0c0d5cb50e0264ba172abadb 135 Gene3D G3DSA:3.40.50.10110 1 134 2.9E-32 T 10-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMQ28_06830 189ef76e0c0d5cb50e0264ba172abadb 135 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 130 4.2E-32 T 10-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AMQ28_06830 189ef76e0c0d5cb50e0264ba172abadb 135 SUPERFAMILY SSF102400 1 134 1.44E-32 T 10-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMQ28_09145 fa145c61a8710a6688e7c55971d02669 335 SUPERFAMILY SSF46689 281 331 2.91E-12 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_09145 fa145c61a8710a6688e7c55971d02669 335 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 42 201 1.3E-27 T 10-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMQ28_09145 fa145c61a8710a6688e7c55971d02669 335 Gene3D G3DSA:1.10.10.60 226 334 2.1E-22 T 10-10-2018 AMQ28_09145 fa145c61a8710a6688e7c55971d02669 335 Pfam PF12833 Helix-turn-helix domain 253 330 2.0E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_09145 fa145c61a8710a6688e7c55971d02669 335 SMART SM00342 248 328 1.6E-15 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_02545 12e9fa8ca3f7ef4e880b2e0a56846c58 120 Pfam PF04076 Bacterial OB fold (BOF) protein 33 119 1.2E-22 T 10-10-2018 IPR005220 Bacterial OB-fold AMQ28_02545 12e9fa8ca3f7ef4e880b2e0a56846c58 120 Gene3D G3DSA:2.40.50.200 15 120 2.7E-28 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily AMQ28_02545 12e9fa8ca3f7ef4e880b2e0a56846c58 120 SUPERFAMILY SSF101756 25 119 1.83E-25 T 10-10-2018 IPR036700 Bacterial OB-fold superfamily AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.1E-19 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.1E-19 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.1E-19 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.1E-19 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.1E-19 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 Pfam PF00106 short chain dehydrogenase 3 200 3.3E-34 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 4.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 4.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.5E-8 T 10-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 SUPERFAMILY SSF51735 3 232 1.21E-52 T 10-10-2018 IPR036291 NAD(P)-binding domain superfamily AMQ28_10800 12325ffc5e4601c2ff54428645d41eaa 273 Gene3D G3DSA:3.40.50.720 2 272 6.9E-66 T 10-10-2018 AMQ28_13230 f6cd3807052b8dcf78fcc05940dbe39f 168 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 20 106 1.5E-15 T 10-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family AMQ28_01165 ba331dbaeb9366679c43c657c222193d 70 Pfam PF13783 Domain of unknown function (DUF4177) 3 68 2.2E-15 T 10-10-2018 IPR025234 Protein of unknown function DUF4177 AMQ28_13720 169ffb28b0e4861997dba1cc8eb44f24 669 Gene3D G3DSA:3.40.50.1820 376 641 2.2E-24 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13720 169ffb28b0e4861997dba1cc8eb44f24 669 SUPERFAMILY SSF53474 378 645 1.17E-22 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_13720 169ffb28b0e4861997dba1cc8eb44f24 669 Pfam PF05057 Putative serine esterase (DUF676) 381 529 7.6E-6 T 10-10-2018 IPR007751 Domain of unknown function DUF676, lipase-like AMQ28_07030 806c8842d66c073ffc377b25151ba929 401 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 121 349 3.2E-29 T 10-10-2018 IPR018713 Domain of unknown function DUF2236 AMQ28_01580 6d28d3b2ccca6b8ae7e6b1beee1dd52a 158 Gene3D G3DSA:2.40.128.520 24 157 3.4E-18 T 10-10-2018 AMQ28_01580 6d28d3b2ccca6b8ae7e6b1beee1dd52a 158 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 152 2.1E-22 T 10-10-2018 IPR019223 Domain of unknown function DUF2147 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 SUPERFAMILY SSF46955 2 123 6.23E-28 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 1.1E-12 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 1.1E-12 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.1E-12 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 Gene3D G3DSA:1.10.1660.10 1 122 2.1E-31 T 10-10-2018 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 Pfam PF13411 MerR HTH family regulatory protein 3 68 1.3E-18 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12470 e4e781f3b362ce8625c14ed5e4360950 126 SMART SM00422 2 70 3.5E-22 T 10-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 SUPERFAMILY SSF55103 274 564 1.86E-101 T 10-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Gene3D G3DSA:3.30.70.610 268 344 7.3E-12 T 10-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Gene3D G3DSA:3.30.70.610 363 431 2.1E-15 T 10-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 PIRSF PIRSF000101 2 566 4.2E-263 T 10-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 8 565 55.621 T 10-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Gene3D G3DSA:3.30.43.10 2 101 9.3E-12 T 10-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 SUPERFAMILY SSF56176 8 270 4.47E-66 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Gene3D G3DSA:3.30.1370.20 432 516 5.7E-38 T 10-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Pfam PF01565 FAD binding domain 46 164 6.5E-8 T 10-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Gene3D G3DSA:3.30.465.10 104 267 2.3E-73 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_12670 f2e7d75965e15a8456a996ee24a49601 567 Pfam PF09330 D-lactate dehydrogenase, membrane binding 276 564 4.1E-130 T 10-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 AMQ28_06225 13e717c20eebea83b3e69ef67ab7596e 312 SUPERFAMILY SSF161111 4 218 8.24E-42 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_06225 13e717c20eebea83b3e69ef67ab7596e 312 Gene3D G3DSA:1.20.1510.10 6 216 1.3E-36 T 10-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMQ28_06225 13e717c20eebea83b3e69ef67ab7596e 312 Pfam PF01545 Cation efflux family 10 216 2.7E-35 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMQ28_06225 13e717c20eebea83b3e69ef67ab7596e 312 SUPERFAMILY SSF160240 220 295 3.27E-6 T 10-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMQ28_06225 13e717c20eebea83b3e69ef67ab7596e 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 8 300 7.1E-45 T 10-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 141 149 - T 10-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 Gene3D G3DSA:3.40.570.10 66 284 4.1E-55 T 10-10-2018 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 Pfam PF01223 DNA/RNA non-specific endonuclease 70 266 5.1E-42 T 10-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 SUPERFAMILY SSF54060 56 276 1.18E-61 T 10-10-2018 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 SMART SM00477 82 270 2.8E-33 T 10-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMQ28_09135 2a1627c236c568f0126855a9fd26df1c 365 SMART SM00892 81 270 9.3E-39 T 10-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMQ28_01260 6dda56fd73cfece18140b7fe2a58df6a 440 SUPERFAMILY SSF103473 8 427 1.03E-33 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_01260 6dda56fd73cfece18140b7fe2a58df6a 440 Pfam PF07690 Major Facilitator Superfamily 17 311 5.0E-16 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_01260 6dda56fd73cfece18140b7fe2a58df6a 440 Gene3D G3DSA:1.20.1250.20 8 424 1.8E-29 T 10-10-2018 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 SMART SM00347 34 137 3.2E-16 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 SUPERFAMILY SSF46785 16 153 1.33E-26 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 Pfam PF12802 MarR family 39 100 1.4E-7 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 127 147 6.9E-10 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 6.9E-10 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 6.9E-10 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 6.9E-10 T 10-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMQ28_00655 34b1a32163b6f4d51349d98a846c4428 162 Gene3D G3DSA:1.10.10.10 10 159 1.9E-28 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_14155 7deb3974b0c671dfa0bfa4e980cf9d90 446 Pfam PF02386 Cation transport protein 39 427 4.3E-58 T 10-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMQ28_07715 be26e0f6a54edfed96207f66b9705177 345 SUPERFAMILY SSF55729 154 319 2.12E-26 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_07715 be26e0f6a54edfed96207f66b9705177 345 Gene3D G3DSA:3.40.630.30 139 303 3.6E-15 T 10-10-2018 AMQ28_07715 be26e0f6a54edfed96207f66b9705177 345 Pfam PF13480 Acetyltransferase (GNAT) domain 205 285 2.2E-8 T 10-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMQ28_04815 69553292f9bf1e73925a2d03a6019af6 205 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 200 6.9E-56 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 AMQ28_04815 69553292f9bf1e73925a2d03a6019af6 205 SUPERFAMILY SSF55821 4 203 5.49E-56 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMQ28_04815 69553292f9bf1e73925a2d03a6019af6 205 Pfam PF01300 Telomere recombination 22 197 1.5E-40 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 AMQ28_04815 69553292f9bf1e73925a2d03a6019af6 205 Gene3D G3DSA:3.90.870.10 2 205 2.8E-57 T 10-10-2018 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 Pfam PF03193 RsgA GTPase 114 285 4.6E-50 T 10-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 Gene3D G3DSA:3.40.50.300 117 284 9.3E-44 T 10-10-2018 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 34 349 32.947 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 Gene3D G3DSA:1.10.40.50 285 352 5.0E-22 T 10-10-2018 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 SUPERFAMILY SSF52540 128 347 1.2E-46 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 92 342 7.1E-70 T 10-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AMQ28_05315 a4ac864da92ac152218929b785c96e2b 352 Gene3D G3DSA:2.40.50.140 32 116 5.5E-18 T 10-10-2018 AMQ28_01455 076f79831f6cafe3ce33f1563227d4a5 556 PIRSF PIRSF006429 34 555 1.1E-161 T 10-10-2018 IPR024188 Glutamate synthase large subunit-like protein AMQ28_01455 076f79831f6cafe3ce33f1563227d4a5 556 PIRSF PIRSF500060 38 556 6.7E-230 T 10-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria AMQ28_01455 076f79831f6cafe3ce33f1563227d4a5 556 Gene3D G3DSA:3.20.20.70 115 529 5.1E-107 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_01455 076f79831f6cafe3ce33f1563227d4a5 556 SUPERFAMILY SSF51395 41 525 1.62E-130 T 10-10-2018 AMQ28_01455 076f79831f6cafe3ce33f1563227d4a5 556 Pfam PF01645 Conserved region in glutamate synthase 170 497 2.6E-84 T 10-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 18 248 1.1E-65 T 10-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 Gene3D G3DSA:1.25.40.10 34 259 9.8E-40 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 SMART SM00028 146 179 0.0062 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 SMART SM00028 73 109 290.0 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 SMART SM00028 39 72 0.1 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 SUPERFAMILY SSF81901 44 207 9.15E-19 T 10-10-2018 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 Pfam PF13431 Tetratricopeptide repeat 98 131 2.3E-5 T 10-10-2018 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 Pfam PF13181 Tetratricopeptide repeat 41 70 0.0021 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_05770 c814070af65bd1f7020f6411d0afb13a 268 Pfam PF13181 Tetratricopeptide repeat 147 178 8.1E-5 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_08775 47e2b258011d49159b54f139beb860ed 108 Pfam PF04341 Protein of unknown function, DUF485 11 95 6.8E-29 T 10-10-2018 IPR007436 Protein of unknown function DUF485 AMQ28_09735 b1d9888a083e2b5342c2f038bfe6cd24 175 PIRSF PIRSF016481 1 172 1.5E-37 T 10-10-2018 IPR007446 Pilus assembly protein PilP AMQ28_09735 b1d9888a083e2b5342c2f038bfe6cd24 175 Pfam PF04351 Pilus assembly protein, PilP 27 170 5.4E-42 T 10-10-2018 IPR007446 Pilus assembly protein PilP AMQ28_09735 b1d9888a083e2b5342c2f038bfe6cd24 175 Gene3D G3DSA:2.30.30.830 77 171 8.3E-28 T 10-10-2018 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 SUPERFAMILY SSF53850 88 285 3.48E-42 T 10-10-2018 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 SUPERFAMILY SSF46785 1 111 2.29E-20 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 Gene3D G3DSA:1.10.10.10 1 91 3.2E-20 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 Gene3D G3DSA:3.40.190.290 92 287 2.1E-41 T 10-10-2018 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 6.3E-18 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.2E-7 T 10-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMQ28_06105 bc3da7bd4e14367a5ad13d1f0e60be58 288 Pfam PF03466 LysR substrate binding domain 87 285 1.3E-43 T 10-10-2018 IPR005119 LysR, substrate-binding AMQ28_12745 2ee2048960ad6bbfdd5b2161832e8103 268 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 10-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AMQ28_12745 2ee2048960ad6bbfdd5b2161832e8103 268 Gene3D G3DSA:3.20.20.70 2 267 2.4E-94 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_12745 2ee2048960ad6bbfdd5b2161832e8103 268 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 7 263 34.405 T 10-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMQ28_12745 2ee2048960ad6bbfdd5b2161832e8103 268 SUPERFAMILY SSF51366 16 263 4.71E-85 T 10-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMQ28_12745 2ee2048960ad6bbfdd5b2161832e8103 268 Pfam PF00218 Indole-3-glycerol phosphate synthase 9 260 3.6E-94 T 10-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMQ28_09210 fecd89b39ce75479f4a08f9582a7299b 244 Pfam PF08241 Methyltransferase domain 39 126 2.9E-15 T 10-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMQ28_09210 fecd89b39ce75479f4a08f9582a7299b 244 SUPERFAMILY SSF53335 2 199 4.85E-26 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_09210 fecd89b39ce75479f4a08f9582a7299b 244 Gene3D G3DSA:1.10.10.2560 132 228 1.2E-77 T 10-10-2018 AMQ28_09210 fecd89b39ce75479f4a08f9582a7299b 244 Gene3D G3DSA:3.40.50.150 16 238 1.2E-77 T 10-10-2018 AMQ28_02460 4dcb7c4e4d7ddc385b09b51ddcdb31e3 259 Pfam PF03883 Peroxide stress protein YaaA 1 243 5.7E-88 T 10-10-2018 IPR005583 Peroxide stress protein YaaA AMQ28_02460 4dcb7c4e4d7ddc385b09b51ddcdb31e3 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 36.339 T 10-10-2018 IPR005583 Peroxide stress protein YaaA AMQ28_10600 ace1379c4eef4f8657dd5b15778a59b6 100 SUPERFAMILY SSF54909 1 96 5.63E-25 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_10600 ace1379c4eef4f8657dd5b15778a59b6 100 Pfam PF03795 YCII-related domain 3 94 2.5E-18 T 10-10-2018 IPR005545 YCII-related AMQ28_10600 ace1379c4eef4f8657dd5b15778a59b6 100 Gene3D G3DSA:3.30.70.1060 1 97 2.0E-29 T 10-10-2018 AMQ28_00525 101df95e49448b97dca2fbc252648d66 429 Pfam PF00924 Mechanosensitive ion channel 144 396 9.8E-48 T 10-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMQ28_00525 101df95e49448b97dca2fbc252648d66 429 SUPERFAMILY SSF50182 186 252 3.07E-11 T 10-10-2018 IPR010920 LSM domain superfamily AMQ28_02010 81bc7538f9db87fbac8b45bc4db6c4dd 402 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 25 396 3.0E-160 T 10-10-2018 IPR011673 Protein of unknown function DUF1615 AMQ28_02010 81bc7538f9db87fbac8b45bc4db6c4dd 402 Pfam PF07759 Protein of unknown function (DUF1615) 52 396 1.1E-118 T 10-10-2018 IPR011673 Protein of unknown function DUF1615 AMQ28_10135 8c362f296f2c2db0a1c467d531e961b7 290 SUPERFAMILY SSF54637 115 283 1.24E-45 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_10135 8c362f296f2c2db0a1c467d531e961b7 290 Gene3D G3DSA:3.10.129.90 2 287 2.1E-95 T 10-10-2018 AMQ28_10135 8c362f296f2c2db0a1c467d531e961b7 290 Pfam PF13622 Thioesterase-like superfamily 33 282 2.8E-52 T 10-10-2018 AMQ28_10135 8c362f296f2c2db0a1c467d531e961b7 290 SUPERFAMILY SSF54637 5 112 7.96E-37 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_04660 6d711a165f7e2a80fe6ddd73c1f8fbdd 577 Gene3D G3DSA:3.50.30.80 378 531 5.8E-46 T 10-10-2018 AMQ28_04660 6d711a165f7e2a80fe6ddd73c1f8fbdd 577 SUPERFAMILY SSF143975 4 377 5.23E-121 T 10-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04660 6d711a165f7e2a80fe6ddd73c1f8fbdd 577 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 10-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04660 6d711a165f7e2a80fe6ddd73c1f8fbdd 577 Pfam PF00920 Dehydratase family 40 559 1.2E-172 T 10-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMQ28_04660 6d711a165f7e2a80fe6ddd73c1f8fbdd 577 SUPERFAMILY SSF52016 378 564 2.04E-54 T 10-10-2018 AMQ28_02280 62a1e3b01b10ee507b967a4d92ed275a 261 Gene3D G3DSA:3.20.20.70 1 259 1.0E-117 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_02280 62a1e3b01b10ee507b967a4d92ed275a 261 Hamap MF_00443 Thiazole synthase [thiG]. 5 260 41.759 T 10-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMQ28_02280 62a1e3b01b10ee507b967a4d92ed275a 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 254 5.8E-108 T 10-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMQ28_02280 62a1e3b01b10ee507b967a4d92ed275a 261 SUPERFAMILY SSF110399 5 246 4.58E-88 T 10-10-2018 AMQ28_10090 ffa55fe2eb7ccf98cca4e455d5abe926 210 Pfam PF05494 MlaC protein 35 198 9.4E-37 T 10-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMQ28_10090 ffa55fe2eb7ccf98cca4e455d5abe926 210 PIRSF PIRSF004649 1 210 2.0E-56 T 10-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMQ28_10090 ffa55fe2eb7ccf98cca4e455d5abe926 210 Gene3D G3DSA:3.10.450.710 27 207 3.9E-46 T 10-10-2018 AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 Pfam PF00563 EAL domain 460 694 2.6E-24 T 10-10-2018 IPR001633 EAL domain AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 SUPERFAMILY SSF55785 145 228 4.71E-5 T 10-10-2018 IPR035965 PAS domain superfamily AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 SUPERFAMILY SSF141868 460 694 2.62E-24 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 SUPERFAMILY SSF52172 19 158 5.29E-5 T 10-10-2018 IPR011006 CheY-like superfamily AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 Gene3D G3DSA:3.20.20.450 457 700 7.3E-27 T 10-10-2018 IPR035919 EAL domain superfamily AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 SMART SM00052 454 700 4.9E-7 T 10-10-2018 IPR001633 EAL domain AMQ28_02665 2a25461ec0dfff84acb67ca1ac3cf486 705 Gene3D G3DSA:3.30.450.20 144 248 1.9E-5 T 10-10-2018 AMQ28_10020 a9840f48bbe028eb16de81e14baa7859 453 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 424 5.3E-89 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_10020 a9840f48bbe028eb16de81e14baa7859 453 PIRSF PIRSF006603 8 452 2.5E-63 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_10020 a9840f48bbe028eb16de81e14baa7859 453 Pfam PF01554 MatE 24 183 2.6E-28 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_10020 a9840f48bbe028eb16de81e14baa7859 453 Pfam PF01554 MatE 250 409 9.4E-30 T 10-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMQ28_13875 600ef027e9fcd98a96b8a462e377ae15 276 Gene3D G3DSA:1.25.40.10 157 276 2.9E-15 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_13875 600ef027e9fcd98a96b8a462e377ae15 276 Pfam PF16331 TolA binding protein trimerisation 55 108 2.7E-9 T 10-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 AMQ28_13875 600ef027e9fcd98a96b8a462e377ae15 276 SUPERFAMILY SSF48452 160 245 4.65E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_13875 600ef027e9fcd98a96b8a462e377ae15 276 Pfam PF13174 Tetratricopeptide repeat 163 191 0.085 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_13875 600ef027e9fcd98a96b8a462e377ae15 276 Pfam PF13174 Tetratricopeptide repeat 197 230 0.016 T 10-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMQ28_05085 34844079aa70a1a414e081e05157dffa 205 Gene3D G3DSA:3.90.79.10 3 180 6.5E-43 T 10-10-2018 AMQ28_05085 34844079aa70a1a414e081e05157dffa 205 SUPERFAMILY SSF55811 14 177 3.66E-28 T 10-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMQ28_05085 34844079aa70a1a414e081e05157dffa 205 Pfam PF00293 NUDIX domain 24 103 4.7E-11 T 10-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMQ28_03180 4ffe9e034841016072379be0e81f8a68 808 TIGRFAM TIGR04214 CSLREA_Nterm: CSLREA domain 28 53 2.4E-11 T 10-10-2018 IPR026457 CSLREA domain AMQ28_03180 4ffe9e034841016072379be0e81f8a68 808 SUPERFAMILY SSF51126 13 337 2.3E-11 T 10-10-2018 IPR011050 Pectin lyase fold/virulence factor AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 Gene3D G3DSA:3.40.1190.20 1 272 7.8E-79 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 263 26.902 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 124 138 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 4.2E-24 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 PIRSF PIRSF000513 9 271 2.7E-74 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 SUPERFAMILY SSF53613 11 269 9.27E-48 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_01590 56dd0f60ccddc593aca747b637b05589 273 Pfam PF02110 Hydroxyethylthiazole kinase family 16 259 9.8E-66 T 10-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMQ28_09300 02b8604b1b988b35e09659014aba067e 384 SUPERFAMILY SSF55874 248 377 1.09E-5 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_09300 02b8604b1b988b35e09659014aba067e 384 Pfam PF06580 Histidine kinase 195 272 1.3E-25 T 10-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AMQ28_09300 02b8604b1b988b35e09659014aba067e 384 Gene3D G3DSA:3.30.565.10 248 381 1.2E-7 T 10-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 Pfam PF02545 Maf-like protein 3 183 3.4E-56 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 SUPERFAMILY SSF52972 2 182 1.63E-59 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 PIRSF PIRSF006305 1 187 8.5E-53 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 Gene3D G3DSA:3.90.950.10 1 187 3.0E-67 T 10-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 Hamap MF_00528 Septum formation protein Maf [maf]. 3 188 30.84 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_11715 1aaa4e3c118dac03431b0b735a39c547 188 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 182 1.5E-50 T 10-10-2018 IPR003697 Maf-like protein GO:0047429 AMQ28_01250 c57626adb46b18f864539d05d2abeed3 1504 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1157 1504 1.8E-44 T 10-10-2018 IPR007452 Translocation and assembly module TamB AMQ28_08790 eb8ceb9670dadbd9695d87cbbd9e2173 656 ProSitePatterns PS01303 BCCT family of transporters signature. 316 325 - T 10-10-2018 IPR018093 BCCT transporter, conserved site AMQ28_08790 eb8ceb9670dadbd9695d87cbbd9e2173 656 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 497 3.7E-161 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 AMQ28_08790 eb8ceb9670dadbd9695d87cbbd9e2173 656 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 496 2.2E-190 T 10-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 AMQ28_08525 03c23bb1538402c2d36872c92b820bf8 241 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 55 194 9.5E-11 T 10-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AMQ28_08525 03c23bb1538402c2d36872c92b820bf8 241 SUPERFAMILY SSF111364 25 241 5.89E-61 T 10-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 AMQ28_08525 03c23bb1538402c2d36872c92b820bf8 241 Gene3D G3DSA:2.40.230.20 18 234 9.6E-25 T 10-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 AMQ28_01355 6c4da2d52966485dad611883a908ad36 184 SUPERFAMILY SSF51905 33 182 3.15E-9 T 10-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMQ28_02895 d901b68870c36d9a59b37bc69637bbcf 321 SUPERFAMILY SSF51197 37 321 5.49E-62 T 10-10-2018 AMQ28_02895 d901b68870c36d9a59b37bc69637bbcf 321 Gene3D G3DSA:3.60.130.10 18 321 3.2E-66 T 10-10-2018 AMQ28_02895 d901b68870c36d9a59b37bc69637bbcf 321 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 313 2.8E-49 T 10-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AMQ28_11930 349c427cef6eb38d3530b30fc1c921b3 118 Pfam PF01906 Putative heavy-metal-binding 1 103 6.4E-38 T 10-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMQ28_11930 349c427cef6eb38d3530b30fc1c921b3 118 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 25.068 T 10-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMQ28_11930 349c427cef6eb38d3530b30fc1c921b3 118 Gene3D G3DSA:3.30.110.70 3 105 1.2E-31 T 10-10-2018 AMQ28_11930 349c427cef6eb38d3530b30fc1c921b3 118 SUPERFAMILY SSF117782 1 103 1.44E-35 T 10-10-2018 IPR035439 UPF0145 domain superfamily AMQ28_11365 3c22f1fefd21c3c5e372d3dc1f1f96de 396 Pfam PF07690 Major Facilitator Superfamily 26 336 7.0E-31 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_11365 3c22f1fefd21c3c5e372d3dc1f1f96de 396 Gene3D G3DSA:1.20.1250.20 15 392 2.5E-42 T 10-10-2018 AMQ28_11365 3c22f1fefd21c3c5e372d3dc1f1f96de 396 SUPERFAMILY SSF103473 11 392 4.97E-55 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_11450 5c82f8008eb23f2b369afa496713efc9 152 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 9 139 2.9E-35 T 10-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 AMQ28_11450 5c82f8008eb23f2b369afa496713efc9 152 SUPERFAMILY SSF55729 1 142 2.74E-32 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_11450 5c82f8008eb23f2b369afa496713efc9 152 Gene3D G3DSA:3.40.630.30 1 148 6.9E-41 T 10-10-2018 AMQ28_11450 5c82f8008eb23f2b369afa496713efc9 152 Pfam PF00583 Acetyltransferase (GNAT) family 26 116 7.9E-16 T 10-10-2018 IPR000182 GNAT domain AMQ28_04040 a3f8059157edb2ec23d280420e0c70f0 235 Gene3D G3DSA:3.40.109.10 2 230 1.1E-63 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_04040 a3f8059157edb2ec23d280420e0c70f0 235 Pfam PF00881 Nitroreductase family 13 209 9.5E-34 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMQ28_04040 a3f8059157edb2ec23d280420e0c70f0 235 SUPERFAMILY SSF55469 9 232 1.13E-45 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_06560 31ed1e5ea6dd56614227069772ab3254 91 PIRSF PIRSF028784 1 91 4.1E-26 T 10-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMQ28_06560 31ed1e5ea6dd56614227069772ab3254 91 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 84 4.8E-18 T 10-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMQ28_06355 85e97c0bfe508ec42bb73a8faa71b264 61 Gene3D G3DSA:3.30.50.10 2 60 7.7E-21 T 10-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 AMQ28_06355 85e97c0bfe508ec42bb73a8faa71b264 61 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 57 18.282 T 10-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMQ28_06355 85e97c0bfe508ec42bb73a8faa71b264 61 Pfam PF03884 DNA gyrase inhibitor YacG 6 52 4.9E-22 T 10-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMQ28_06355 85e97c0bfe508ec42bb73a8faa71b264 61 SUPERFAMILY SSF57716 2 57 1.43E-19 T 10-10-2018 AMQ28_07055 3176409b757cca11f54e8ac0f0b6a5af 403 Gene3D G3DSA:3.40.50.450 4 297 1.3E-89 T 10-10-2018 AMQ28_07055 3176409b757cca11f54e8ac0f0b6a5af 403 SUPERFAMILY SSF102405 89 295 6.87E-42 T 10-10-2018 AMQ28_07055 3176409b757cca11f54e8ac0f0b6a5af 403 Pfam PF02481 DNA recombination-mediator protein A 85 286 1.6E-73 T 10-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMQ28_07055 3176409b757cca11f54e8ac0f0b6a5af 403 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 79 295 1.9E-70 T 10-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMQ28_05305 084e4714aba64f1af4922f054322f65b 256 SUPERFAMILY SSF69572 8 252 6.54E-59 T 10-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMQ28_05305 084e4714aba64f1af4922f054322f65b 256 Gene3D G3DSA:3.40.50.720 3 256 3.5E-90 T 10-10-2018 AMQ28_05305 084e4714aba64f1af4922f054322f65b 256 Pfam PF00899 ThiF family 24 252 1.2E-35 T 10-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMQ28_01030 7c594308fdda1242ff4f3f471dcd6aed 291 SUPERFAMILY SSF56281 8 289 8.96E-43 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_01030 7c594308fdda1242ff4f3f471dcd6aed 291 Pfam PF00753 Metallo-beta-lactamase superfamily 15 205 5.5E-19 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_01030 7c594308fdda1242ff4f3f471dcd6aed 291 Gene3D G3DSA:3.60.15.10 1 288 3.3E-96 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_01030 7c594308fdda1242ff4f3f471dcd6aed 291 SMART SM00849 15 205 4.9E-20 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_03075 c9cc8564aefc2971d0f1729f3a9135dd 105 Gene3D G3DSA:3.30.70.120 1 103 7.3E-38 T 10-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMQ28_03075 c9cc8564aefc2971d0f1729f3a9135dd 105 SUPERFAMILY SSF102705 2 100 1.65E-22 T 10-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily AMQ28_00745 a25150ed48ec61d1cc9a17071918d0a5 137 SUPERFAMILY SSF51161 2 107 9.69E-18 T 10-10-2018 IPR011004 Trimeric LpxA-like superfamily AMQ28_00745 a25150ed48ec61d1cc9a17071918d0a5 137 Gene3D G3DSA:2.160.10.10 45 111 3.3E-16 T 10-10-2018 AMQ28_00745 a25150ed48ec61d1cc9a17071918d0a5 137 Gene3D G3DSA:2.160.10.10 5 44 4.2E-7 T 10-10-2018 AMQ28_00745 a25150ed48ec61d1cc9a17071918d0a5 137 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 43 3.4E-4 T 10-10-2018 IPR001451 Hexapeptide repeat AMQ28_01465 6ef6b209a0e1c3c11cc1bed1f34d7c1d 386 Pfam PF02698 DUF218 domain 222 369 8.6E-21 T 10-10-2018 IPR003848 Domain of unknown function DUF218 AMQ28_01465 6ef6b209a0e1c3c11cc1bed1f34d7c1d 386 Gene3D G3DSA:3.40.50.620 245 340 1.4E-5 T 10-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMQ28_00770 4b4618c0f315188636fec56a2632b864 133 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 127 9.3E-57 T 10-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 AMQ28_00770 4b4618c0f315188636fec56a2632b864 133 Pfam PF03817 Malonate transporter MadL subunit 1 116 3.9E-42 T 10-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 AMQ28_06210 d9e96e7aa7be79793c392411eb594b4d 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 67 4.9E-7 T 10-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMQ28_06210 d9e96e7aa7be79793c392411eb594b4d 214 SUPERFAMILY SSF46689 14 77 3.24E-13 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_06210 d9e96e7aa7be79793c392411eb594b4d 214 Gene3D G3DSA:1.10.357.10 10 204 1.7E-15 T 10-10-2018 AMQ28_06135 b15b1f4dbac9f1b7e037b8c95fe11693 95 Gene3D G3DSA:3.30.2310.20 1 94 1.1E-25 T 10-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMQ28_06135 b15b1f4dbac9f1b7e037b8c95fe11693 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 83 1.6E-9 T 10-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMQ28_06135 b15b1f4dbac9f1b7e037b8c95fe11693 95 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 82 4.1E-8 T 10-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMQ28_06135 b15b1f4dbac9f1b7e037b8c95fe11693 95 SUPERFAMILY SSF143011 1 83 4.19E-19 T 10-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMQ28_02245 c20016ef60e33989b2d17b165f59cf57 191 Pfam PF00881 Nitroreductase family 14 168 4.7E-19 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMQ28_02245 c20016ef60e33989b2d17b165f59cf57 191 SUPERFAMILY SSF55469 10 185 1.07E-26 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_02245 c20016ef60e33989b2d17b165f59cf57 191 PIRSF PIRSF000232 5 191 6.1E-58 T 10-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AMQ28_02245 c20016ef60e33989b2d17b165f59cf57 191 Gene3D G3DSA:3.40.109.10 9 188 7.1E-32 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_11610 34f997c52d00d11c75a5090411d22f8c 225 Pfam PF03783 Curli production assembly/transport component CsgG 46 220 6.8E-30 T 10-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 AMQ28_11610 34f997c52d00d11c75a5090411d22f8c 225 SUPERFAMILY SSF52964 66 151 2.48E-7 T 10-10-2018 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.2E-43 T 10-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 SUPERFAMILY SSF52518 4 177 5.05E-63 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Gene3D G3DSA:3.40.50.970 1 181 1.8E-72 T 10-10-2018 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 1.6E-250 T 10-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 SUPERFAMILY SSF52518 374 569 1.06E-66 T 10-10-2018 IPR029061 Thiamin diphosphate-binding fold AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 166 2.1E-58 T 10-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 SUPERFAMILY SSF52467 190 362 2.31E-64 T 10-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Gene3D G3DSA:3.40.50.970 367 574 8.1E-65 T 10-10-2018 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 3.5E-47 T 10-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMQ28_05835 3c05a6bf178e31f83c69f1940739bb4b 575 Gene3D G3DSA:3.40.50.1220 191 362 1.5E-60 T 10-10-2018 AMQ28_10905 e9eba0af0cb66f24bdea250c4e4aa83e 296 SUPERFAMILY SSF53756 1 240 1.49E-6 T 10-10-2018 AMQ28_10905 e9eba0af0cb66f24bdea250c4e4aa83e 296 Pfam PF06258 Mitochondrial fission ELM1 11 293 1.0E-54 T 10-10-2018 IPR009367 Mitochondrial fission protein ELM1-like AMQ28_11540 a6e01adefc7a5b0c7bc2e50062423eac 149 Gene3D G3DSA:1.20.120.50 1 125 2.6E-31 T 10-10-2018 IPR035938 Hemerythrin-like superfamily AMQ28_11540 a6e01adefc7a5b0c7bc2e50062423eac 149 SUPERFAMILY SSF47188 2 122 8.63E-27 T 10-10-2018 IPR035938 Hemerythrin-like superfamily AMQ28_11540 a6e01adefc7a5b0c7bc2e50062423eac 149 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 2 121 9.0E-30 T 10-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 AMQ28_11540 a6e01adefc7a5b0c7bc2e50062423eac 149 Pfam PF01814 Hemerythrin HHE cation binding domain 10 122 1.7E-8 T 10-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMQ28_08415 48e5b1a125ba8cbf733862c4cc22e00e 318 Gene3D G3DSA:1.20.1530.20 1 309 9.4E-118 T 10-10-2018 IPR038770 Sodium/solute symporter superfamily AMQ28_08415 48e5b1a125ba8cbf733862c4cc22e00e 318 Pfam PF01758 Sodium Bile acid symporter family 43 220 1.2E-45 T 10-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMQ28_03620 5bd5bcbf35fa60782efa1aea41c08e6d 127 SUPERFAMILY SSF55718 4 108 1.04E-10 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMQ28_03620 5bd5bcbf35fa60782efa1aea41c08e6d 127 Pfam PF02036 SCP-2 sterol transfer family 37 108 1.3E-6 T 10-10-2018 IPR003033 SCP2 sterol-binding domain AMQ28_03620 5bd5bcbf35fa60782efa1aea41c08e6d 127 Gene3D G3DSA:3.30.1050.10 15 118 2.2E-12 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 SMART SM00283 426 687 8.4E-86 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 4.0E-7 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 553 582 4.0E-7 T 10-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 473 655 6.0E-41 T 10-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 Gene3D G3DSA:1.10.287.950 363 689 7.7E-63 T 10-10-2018 AMQ28_04155 f992594472f82f76f4fed8ac2526b19e 690 SUPERFAMILY SSF58104 386 688 2.09E-69 T 10-10-2018 AMQ28_01140 3a96585d71a10d483871f3d3e75f8a83 430 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 5.7E-143 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AMQ28_01140 3a96585d71a10d483871f3d3e75f8a83 430 Pfam PF05525 Branched-chain amino acid transport protein 7 428 2.4E-143 T 10-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AMQ28_05790 6b1d6ff80d89a25b890a69e9397bacd8 183 SUPERFAMILY SSF48317 11 177 5.63E-36 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMQ28_05790 6b1d6ff80d89a25b890a69e9397bacd8 183 SMART SM00014 63 173 3.2E-13 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_05790 6b1d6ff80d89a25b890a69e9397bacd8 183 Gene3D G3DSA:1.20.144.10 65 180 7.5E-18 T 10-10-2018 AMQ28_05790 6b1d6ff80d89a25b890a69e9397bacd8 183 Pfam PF01569 PAP2 superfamily 71 177 2.6E-21 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_07725 29917b16ad7e0996d5c38d126fb679f4 213 Pfam PF02397 Bacterial sugar transferase 7 181 1.4E-63 T 10-10-2018 IPR003362 Bacterial sugar transferase AMQ28_06065 69978dfef23df61f090b8defdc6dfc0c 120 Gene3D G3DSA:1.20.1270.180 18 114 1.2E-9 T 10-10-2018 AMQ28_06065 69978dfef23df61f090b8defdc6dfc0c 120 Pfam PF07007 Lysozyme inhibitor LprI 22 101 4.0E-13 T 10-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMQ28_10655 b37d16f199cf74b9938d34bdea8da018 308 Pfam PF11726 Inovirus Gp2 97 260 9.1E-12 T 10-10-2018 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 6.9E-25 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 10-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.385 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 Pfam PF00471 Ribosomal protein L33 4 49 6.1E-18 T 10-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 Gene3D G3DSA:2.20.28.120 1 51 2.9E-28 T 10-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMQ28_05940 0085f46dd607ca4be0ac10cf06490dfb 51 SUPERFAMILY SSF57829 1 49 1.28E-18 T 10-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMQ28_11770 65b2e5124013c7ba0b6b549c5c900423 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 11 100 3.6E-14 T 10-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMQ28_00945 6a03ff61799a7028aa2ff1b55165c068 218 Gene3D G3DSA:3.40.30.10 1 210 1.2E-44 T 10-10-2018 AMQ28_00945 6a03ff61799a7028aa2ff1b55165c068 218 Pfam PF01323 DSBA-like thioredoxin domain 8 168 1.0E-20 T 10-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMQ28_00945 6a03ff61799a7028aa2ff1b55165c068 218 SUPERFAMILY SSF52833 7 211 8.8E-26 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08235 9cefe609642fd7527c792955b7539143 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 12 145 4.4E-17 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_08235 9cefe609642fd7527c792955b7539143 160 Gene3D G3DSA:3.10.50.40 11 159 1.2E-35 T 10-10-2018 AMQ28_08235 9cefe609642fd7527c792955b7539143 160 SUPERFAMILY SSF54534 13 149 2.55E-33 T 10-10-2018 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 10-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 SUPERFAMILY SSF51395 5 376 6.11E-100 T 10-10-2018 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.616 T 10-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 PIRSF PIRSF000138 1 380 2.2E-120 T 10-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 Pfam PF01070 FMN-dependent dehydrogenase 13 375 6.1E-125 T 10-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMQ28_12665 29a528ce8ec202bfcb75cb1e49ac2ab2 384 Gene3D G3DSA:3.20.20.70 1 383 3.1E-125 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_08825 ba31ffb2dcb604d430684e3d5e044fdd 361 Pfam PF04332 Protein of unknown function (DUF475) 54 356 7.4E-111 T 10-10-2018 IPR007427 Protein of unknown function DUF475 AMQ28_10080 66de4fab6bd870dac056c697796c0ce2 258 Pfam PF02405 Permease MlaE 41 252 1.2E-72 T 10-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMQ28_10080 66de4fab6bd870dac056c697796c0ce2 258 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 4 256 5.6E-87 T 10-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AMQ28_05200 fbf7dd46224476ed66192282c9c1e03e 172 SUPERFAMILY SSF52091 8 105 2.16E-12 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_05200 fbf7dd46224476ed66192282c9c1e03e 172 PIRSF PIRSF029548 1 160 1.4E-34 T 10-10-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type AMQ28_05200 fbf7dd46224476ed66192282c9c1e03e 172 Gene3D G3DSA:3.30.750.24 4 108 7.1E-10 T 10-10-2018 IPR036513 STAS domain superfamily AMQ28_04385 7869878c34f4c089e1a13cba055b0734 84 Gene3D G3DSA:3.30.160.390 24 76 4.7E-10 T 10-10-2018 IPR038488 Integrase, DNA-binding domain superfamily AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 8.5E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 8.5E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 8.5E-5 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00412 Epoxide hydrolase signature 42 57 3.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00412 Epoxide hydrolase signature 230 252 3.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 PRINTS PR00412 Epoxide hydrolase signature 85 98 3.6E-5 T 10-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 Gene3D G3DSA:3.40.50.1820 2 254 6.3E-60 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 SUPERFAMILY SSF53474 14 253 5.81E-44 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_01025 cd74bd10ef3fe7d22ed2e6a5ce7e135b 255 Pfam PF12697 Alpha/beta hydrolase family 19 247 2.1E-19 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_02370 fa336846882c25acc23b609e46aa00f5 349 Pfam PF00248 Aldo/keto reductase family 15 340 2.9E-66 T 10-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMQ28_02370 fa336846882c25acc23b609e46aa00f5 349 Gene3D G3DSA:3.20.20.100 1 349 3.0E-121 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMQ28_02370 fa336846882c25acc23b609e46aa00f5 349 SUPERFAMILY SSF51430 1 347 8.25E-100 T 10-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMQ28_07835 ea6dc3e6d71aaf16b3c1d855a8cea0d6 213 Gene3D G3DSA:3.30.530.20 24 204 2.8E-44 T 10-10-2018 IPR023393 START-like domain superfamily AMQ28_07835 ea6dc3e6d71aaf16b3c1d855a8cea0d6 213 Pfam PF01852 START domain 37 197 2.9E-9 T 10-10-2018 IPR002913 START domain GO:0008289 AMQ28_07835 ea6dc3e6d71aaf16b3c1d855a8cea0d6 213 PIRSF PIRSF039033 1 212 2.3E-38 T 10-10-2018 IPR028347 START domain-containing protein AMQ28_07835 ea6dc3e6d71aaf16b3c1d855a8cea0d6 213 SUPERFAMILY SSF55961 25 197 9.62E-33 T 10-10-2018 AMQ28_04910 ef9d06251f6ee338e92fcd6980972771 105 SUPERFAMILY SSF46689 1 97 7.88E-18 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_04910 ef9d06251f6ee338e92fcd6980972771 105 Pfam PF01527 Transposase 3 85 1.3E-6 T 10-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMQ28_04910 ef9d06251f6ee338e92fcd6980972771 105 Gene3D G3DSA:1.10.10.10 1 59 3.9E-23 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_11990 1414f9b0fad1adf7ca5b59f5088c6fa2 264 Gene3D G3DSA:3.90.640.20 172 258 3.4E-18 T 10-10-2018 IPR037126 PdaC/RsiV-like superfamily AMQ28_11990 1414f9b0fad1adf7ca5b59f5088c6fa2 264 Pfam PF11738 Protein of unknown function (DUF3298) 202 243 9.0E-9 T 10-10-2018 IPR021729 Domain of unknown function DUF3298 AMQ28_11990 1414f9b0fad1adf7ca5b59f5088c6fa2 264 Gene3D G3DSA:3.30.565.40 50 171 4.8E-11 T 10-10-2018 AMQ28_13320 7faaaee6da9ac14bcd0886661c0cd021 174 Gene3D G3DSA:2.70.70.10 20 174 8.9E-50 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_13320 7faaaee6da9ac14bcd0886661c0cd021 174 Pfam PF01551 Peptidase family M23 64 163 3.7E-24 T 10-10-2018 IPR016047 Peptidase M23 AMQ28_13320 7faaaee6da9ac14bcd0886661c0cd021 174 SUPERFAMILY SSF51261 49 167 1.88E-34 T 10-10-2018 IPR011055 Duplicated hybrid motif AMQ28_08150 e5910702d39273f77d0d8736edbcbf29 318 Pfam PF03741 Integral membrane protein TerC family 81 282 2.2E-53 T 10-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMQ28_08150 e5910702d39273f77d0d8736edbcbf29 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 9 313 1.8E-117 T 10-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMQ28_13195 6350e226c98cfb38cb9204822c842467 252 PIRSF PIRSF028589 1 249 6.9E-39 T 10-10-2018 IPR016893 Protein of unknown function UCP028589 AMQ28_08295 c97977e319023ca5baa338620797269a 136 SUPERFAMILY SSF51679 1 129 8.98E-31 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_08295 c97977e319023ca5baa338620797269a 136 Gene3D G3DSA:3.20.20.30 1 131 1.0E-49 T 10-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMQ28_08295 c97977e319023ca5baa338620797269a 136 Pfam PF00296 Luciferase-like monooxygenase 1 129 1.4E-33 T 10-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMQ28_03280 a3fc623d5fbd449d010e731b3096176a 369 Pfam PF12698 ABC-2 family transporter protein 23 358 8.6E-27 T 10-10-2018 AMQ28_08255 91fffd50e673e4d9041c8b8d9b51ab82 376 Pfam PF03595 Voltage-dependent anion channel 17 354 4.7E-79 T 10-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 AMQ28_08255 91fffd50e673e4d9041c8b8d9b51ab82 376 Gene3D G3DSA:1.50.10.150 14 365 2.4E-20 T 10-10-2018 IPR038665 Voltage-dependent anion channel superfamily AMQ28_06015 960c9c82500b2b252fe9413aff904a88 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 302 4.7E-69 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_06015 960c9c82500b2b252fe9413aff904a88 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 9 311 41.473 T 10-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 AMQ28_06015 960c9c82500b2b252fe9413aff904a88 312 PIRSF PIRSF026649 8 311 5.1E-86 T 10-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMQ28_12310 0c1edd38bf3bca0caf0a184466ee72fa 222 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 88 155 6.6E-15 T 10-10-2018 AMQ28_12310 0c1edd38bf3bca0caf0a184466ee72fa 222 Gene3D G3DSA:3.40.50.150 51 218 3.4E-21 T 10-10-2018 AMQ28_12310 0c1edd38bf3bca0caf0a184466ee72fa 222 SUPERFAMILY SSF53335 62 220 9.62E-22 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_11950 d554d34c99608dcb4b9cb9a8a4419667 203 SUPERFAMILY SSF48317 6 195 9.42E-36 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMQ28_11950 d554d34c99608dcb4b9cb9a8a4419667 203 Gene3D G3DSA:1.20.144.10 107 202 5.0E-23 T 10-10-2018 AMQ28_11950 d554d34c99608dcb4b9cb9a8a4419667 203 Pfam PF01569 PAP2 superfamily 83 194 1.0E-21 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_11950 d554d34c99608dcb4b9cb9a8a4419667 203 SMART SM00014 80 189 1.6E-17 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_07660 dcb8678183fa5c56131b8dd6cdd7f07c 173 Pfam PF04608 Phosphatidylglycerophosphatase A 25 166 6.9E-48 T 10-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AMQ28_07660 dcb8678183fa5c56131b8dd6cdd7f07c 173 SUPERFAMILY SSF101307 18 168 5.62E-42 T 10-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 AMQ28_07660 dcb8678183fa5c56131b8dd6cdd7f07c 173 PIRSF PIRSF006162 13 173 4.1E-49 T 10-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMQ28_10460 d1b3dcb7fcd4fa10111122c5b510266f 368 Pfam PF02562 PhoH-like protein 118 321 2.1E-95 T 10-10-2018 IPR003714 PhoH-like protein GO:0005524 AMQ28_10460 d1b3dcb7fcd4fa10111122c5b510266f 368 Gene3D G3DSA:3.40.50.300 115 321 2.5E-75 T 10-10-2018 AMQ28_10460 d1b3dcb7fcd4fa10111122c5b510266f 368 SUPERFAMILY SSF52540 117 298 3.75E-40 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 SUPERFAMILY SSF109604 337 489 6.91E-17 T 10-10-2018 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 688 2.9E-234 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 Pfam PF05746 DALR anticodon binding domain 582 680 3.8E-9 T 10-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 550 5.3E-199 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 1.3E-31 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 1.3E-31 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 1.3E-31 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 1.3E-31 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 1.3E-31 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_06290 fc89857b7dff5b2955137a7938b0e46e 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 687 24.861 T 10-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMQ28_11535 3d33f669d665aec694efdfd416718fb0 282 Pfam PF13230 Glutamine amidotransferases class-II 1 262 5.6E-118 T 10-10-2018 IPR026869 Putative glutamine amidotransferase type 2 AMQ28_11535 3d33f669d665aec694efdfd416718fb0 282 SUPERFAMILY SSF56235 2 251 2.83E-43 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_11535 3d33f669d665aec694efdfd416718fb0 282 Gene3D G3DSA:3.60.20.10 1 258 1.3E-93 T 10-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMQ28_02815 d6ee3397e8d82360e80868bdb5447748 198 Gene3D G3DSA:1.20.144.10 91 184 2.7E-15 T 10-10-2018 AMQ28_02815 d6ee3397e8d82360e80868bdb5447748 198 SUPERFAMILY SSF48317 4 172 2.35E-28 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMQ28_02815 d6ee3397e8d82360e80868bdb5447748 198 Pfam PF01569 PAP2 superfamily 62 170 9.0E-13 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_02815 d6ee3397e8d82360e80868bdb5447748 198 SMART SM00014 57 166 2.5E-15 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_07170 48f0e5381e263543f9f5ee6872668153 206 Pfam PF01810 LysE type translocator 16 201 3.6E-33 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_07170 48f0e5381e263543f9f5ee6872668153 206 PIRSF PIRSF006324 1 206 3.3E-46 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_01185 783868c2cb2d900adce2cc2b37f8242a 407 Pfam PF03616 Sodium/glutamate symporter 3 375 5.7E-137 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_01185 783868c2cb2d900adce2cc2b37f8242a 407 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 406 24.435 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_01185 783868c2cb2d900adce2cc2b37f8242a 407 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 404 4.1E-149 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_00215 39bb5aaf383e1c0901b80dabdf25bd17 457 SUPERFAMILY SSF56112 104 318 1.63E-10 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_00215 39bb5aaf383e1c0901b80dabdf25bd17 457 Pfam PF03109 ABC1 family 128 232 1.7E-25 T 10-10-2018 IPR004147 UbiB domain AMQ28_03125 d53e4fedb5bc8843bdff5e4ffd00e72e 232 Pfam PF01618 MotA/TolQ/ExbB proton channel family 83 206 5.5E-37 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMQ28_03125 d53e4fedb5bc8843bdff5e4ffd00e72e 232 TIGRFAM TIGR02796 tolQ: protein TolQ 11 222 2.7E-80 T 10-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMQ28_03125 d53e4fedb5bc8843bdff5e4ffd00e72e 232 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 9 227 38.339 T 10-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMQ28_03365 7077621a21b4f0f01250513e2b89595d 324 SUPERFAMILY SSF54427 209 322 3.94E-5 T 10-10-2018 IPR032710 NTF2-like domain superfamily AMQ28_03365 7077621a21b4f0f01250513e2b89595d 324 SMART SM00978 193 322 4.5E-26 T 10-10-2018 IPR007379 Tim44-like domain AMQ28_03365 7077621a21b4f0f01250513e2b89595d 324 Pfam PF04280 Tim44-like domain 202 322 2.2E-10 T 10-10-2018 IPR007379 Tim44-like domain AMQ28_00505 be820edc00bcdc78e9a349580447e6ff 154 SMART SM01034 4 97 4.0E-31 T 10-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMQ28_00505 be820edc00bcdc78e9a349580447e6ff 154 SUPERFAMILY SSF54975 4 134 4.91E-32 T 10-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMQ28_00505 be820edc00bcdc78e9a349580447e6ff 154 Gene3D G3DSA:3.30.70.100 2 122 1.3E-28 T 10-10-2018 AMQ28_00505 be820edc00bcdc78e9a349580447e6ff 154 Pfam PF04940 Sensors of blue-light using FAD 5 96 1.5E-24 T 10-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AMQ28_03460 a55a15fdfd46935d47c35273c0424b7e 362 SUPERFAMILY SSF56281 132 261 1.1E-9 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_03460 a55a15fdfd46935d47c35273c0424b7e 362 Gene3D G3DSA:3.60.15.10 106 288 2.3E-20 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_02150 9668c23fb13645ce05bb0267a26c25ea 504 Pfam PF11815 Domain of unknown function (DUF3336) 16 150 2.9E-36 T 10-10-2018 IPR021771 Triacylglycerol lipase GO:0004806|GO:0006629 AMQ28_02150 9668c23fb13645ce05bb0267a26c25ea 504 Pfam PF01734 Patatin-like phospholipase 158 341 2.3E-24 T 10-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMQ28_02150 9668c23fb13645ce05bb0267a26c25ea 504 Gene3D G3DSA:3.40.1090.10 237 387 7.8E-14 T 10-10-2018 AMQ28_02150 9668c23fb13645ce05bb0267a26c25ea 504 SUPERFAMILY SSF52151 157 489 7.32E-45 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_02150 9668c23fb13645ce05bb0267a26c25ea 504 Gene3D G3DSA:3.40.1090.20 156 232 7.3E-7 T 10-10-2018 AMQ28_09920 357e87397d05765c6343310c71f95a95 256 Pfam PF01925 Sulfite exporter TauE/SafE 10 247 4.8E-38 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMQ28_06370 91acd0ab65128ac3f2d23f1a5bdb2a3d 342 Pfam PF13271 Domain of unknown function (DUF4062) 7 85 1.8E-12 T 10-10-2018 IPR025139 Domain of unknown function DUF4062 AMQ28_12690 3a113e5657bb17b1e00360ec57b477f7 163 Gene3D G3DSA:3.10.450.50 6 163 1.5E-41 T 10-10-2018 AMQ28_12690 3a113e5657bb17b1e00360ec57b477f7 163 Pfam PF00866 Ring hydroxylating beta subunit 16 155 6.6E-45 T 10-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 AMQ28_12690 3a113e5657bb17b1e00360ec57b477f7 163 SUPERFAMILY SSF54427 2 162 1.11E-44 T 10-10-2018 IPR032710 NTF2-like domain superfamily AMQ28_12690 3a113e5657bb17b1e00360ec57b477f7 163 TIGRFAM TIGR03231 anthran_1_2_B: anthranilate 1,2-dioxygenase, small subunit 9 163 2.5E-88 T 10-10-2018 IPR017640 Anthranilate 1,2-dioxygenase, small subunit GO:0019439 KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 AMQ28_02945 e00185e3e4766644006251861afd6896 275 Gene3D G3DSA:2.10.109.10 59 258 1.2E-69 T 10-10-2018 AMQ28_02945 e00185e3e4766644006251861afd6896 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 61 77 2.8E-24 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMQ28_02945 e00185e3e4766644006251861afd6896 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 219 238 2.8E-24 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMQ28_02945 e00185e3e4766644006251861afd6896 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 125 137 2.8E-24 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMQ28_02945 e00185e3e4766644006251861afd6896 275 ProSitePatterns PS00501 Signal peptidases I serine active site. 70 77 - T 10-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AMQ28_02945 e00185e3e4766644006251861afd6896 275 Pfam PF10502 Signal peptidase, peptidase S26 218 256 3.5E-5 T 10-10-2018 IPR019533 Peptidase S26 AMQ28_02945 e00185e3e4766644006251861afd6896 275 ProSitePatterns PS00760 Signal peptidases I lysine active site. 127 139 - T 10-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AMQ28_02945 e00185e3e4766644006251861afd6896 275 Pfam PF00717 Peptidase S24-like 68 149 1.1E-21 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMQ28_02945 e00185e3e4766644006251861afd6896 275 SUPERFAMILY SSF51306 59 260 2.62E-66 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMQ28_02945 e00185e3e4766644006251861afd6896 275 Gene3D G3DSA:2.170.230.10 136 218 1.2E-69 T 10-10-2018 AMQ28_02945 e00185e3e4766644006251861afd6896 275 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 257 3.8E-49 T 10-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMQ28_11325 199409c9ecaeef1c7491bba4b50545c3 307 Pfam PF03547 Membrane transport protein 157 299 1.0E-9 T 10-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMQ28_11325 199409c9ecaeef1c7491bba4b50545c3 307 Pfam PF03547 Membrane transport protein 2 145 6.8E-12 T 10-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMQ28_11925 b58c66ac9b445a22aeb185afe64e8c56 144 Pfam PF01906 Putative heavy-metal-binding 55 143 6.2E-22 T 10-10-2018 IPR002765 Uncharacterised protein family UPF0145 AMQ28_11925 b58c66ac9b445a22aeb185afe64e8c56 144 Gene3D G3DSA:3.30.110.70 48 144 1.9E-22 T 10-10-2018 AMQ28_11925 b58c66ac9b445a22aeb185afe64e8c56 144 SUPERFAMILY SSF117782 56 142 3.92E-22 T 10-10-2018 IPR035439 UPF0145 domain superfamily AMQ28_01365 ecec5bc22d2ee0ef9eee09fd840d5a60 278 Pfam PF03618 Kinase/pyrophosphorylase 11 268 3.1E-75 T 10-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMQ28_01365 ecec5bc22d2ee0ef9eee09fd840d5a60 278 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 8 277 74.102 T 10-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein AMQ28_05410 50f776b7856b23cd93817cef567939be 344 Pfam PF06067 Domain of unknown function (DUF932) 77 324 4.3E-79 T 10-10-2018 IPR026325 Protein of unknown function DUF932 AMQ28_05410 50f776b7856b23cd93817cef567939be 344 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 340 9.1E-117 T 10-10-2018 IPR017686 Phage/plasmid-like protein AMQ28_01105 b7a415bfcc87a3e1fcc7ad2a55fc11e4 136 SUPERFAMILY SSF54427 5 114 2.03E-21 T 10-10-2018 IPR032710 NTF2-like domain superfamily AMQ28_01105 b7a415bfcc87a3e1fcc7ad2a55fc11e4 136 Pfam PF12680 SnoaL-like domain 10 106 3.3E-7 T 10-10-2018 IPR037401 SnoaL-like domain AMQ28_01105 b7a415bfcc87a3e1fcc7ad2a55fc11e4 136 Gene3D G3DSA:3.10.450.50 2 133 1.2E-42 T 10-10-2018 AMQ28_12825 c57361cd86f66650a9e898c6419fea53 252 Gene3D G3DSA:3.40.1390.30 98 223 1.2E-80 T 10-10-2018 AMQ28_12825 c57361cd86f66650a9e898c6419fea53 252 Gene3D G3DSA:3.40.1390.30 15 237 1.2E-80 T 10-10-2018 AMQ28_12825 c57361cd86f66650a9e898c6419fea53 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 3 250 2.2E-60 T 10-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMQ28_12825 c57361cd86f66650a9e898c6419fea53 252 SUPERFAMILY SSF102705 1 251 1.12E-79 T 10-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily AMQ28_12825 c57361cd86f66650a9e898c6419fea53 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 240 4.0E-64 T 10-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMQ28_05850 7311f73590e93799deb0bbe53df4e03b 179 Gene3D G3DSA:3.30.160.150 28 169 6.8E-37 T 10-10-2018 AMQ28_05850 7311f73590e93799deb0bbe53df4e03b 179 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 8 164 18.558 T 10-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AMQ28_07145 359ddd90e2c51d07a9b2f0c58d635c1f 132 Pfam PF03899 ATP synthase I chain 16 112 1.5E-19 T 10-10-2018 IPR005598 ATP synthase protein I AMQ28_03910 ebaa0ba9ccee2fcedeecf51567d4f174 539 Pfam PF01384 Phosphate transporter family 81 528 1.7E-83 T 10-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AMQ28_08925 30cb850f93dc86a96f4cef1ddebaa9ef 284 SUPERFAMILY SSF53098 114 273 4.4E-36 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_08925 30cb850f93dc86a96f4cef1ddebaa9ef 284 Pfam PF00665 Integrase core domain 120 233 2.5E-28 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_08925 30cb850f93dc86a96f4cef1ddebaa9ef 284 Gene3D G3DSA:3.30.420.10 112 281 6.6E-11 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_05875 70cae1808f752e11fa57e3eea16761da 177 Gene3D G3DSA:3.90.1720.10 59 175 2.9E-30 T 10-10-2018 AMQ28_01050 3a99dbd3a2b691e2c92d08d6bba0e03e 196 SUPERFAMILY SSF51306 71 192 3.66E-30 T 10-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMQ28_01050 3a99dbd3a2b691e2c92d08d6bba0e03e 196 Gene3D G3DSA:2.10.109.10 76 195 5.0E-43 T 10-10-2018 AMQ28_01050 3a99dbd3a2b691e2c92d08d6bba0e03e 196 Pfam PF00717 Peptidase S24-like 106 177 3.0E-12 T 10-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMQ28_03515 24c81e6665ef1b2ed6834accb595582b 202 SUPERFAMILY SSF53448 10 193 8.26E-18 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_03515 24c81e6665ef1b2ed6834accb595582b 202 Pfam PF12804 MobA-like NTP transferase domain 11 159 1.4E-19 T 10-10-2018 IPR025877 MobA-like NTP transferase AMQ28_03515 24c81e6665ef1b2ed6834accb595582b 202 Gene3D G3DSA:3.90.550.10 6 200 3.7E-30 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_10870 82ab61bd6e7ee2b0b16062f61fca5291 188 Gene3D G3DSA:1.20.1440.20 15 182 1.6E-30 T 10-10-2018 IPR023353 LemA-like domain superfamily AMQ28_10870 82ab61bd6e7ee2b0b16062f61fca5291 188 Pfam PF04011 LemA family 6 166 1.3E-35 T 10-10-2018 IPR007156 LemA AMQ28_10870 82ab61bd6e7ee2b0b16062f61fca5291 188 SUPERFAMILY SSF140478 24 164 7.32E-35 T 10-10-2018 IPR023353 LemA-like domain superfamily AMQ28_11055 b0c47144b00728a83b1cafeb25b952ae 192 SUPERFAMILY SSF89028 7 185 2.16E-55 T 10-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMQ28_11055 b0c47144b00728a83b1cafeb25b952ae 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 26 186 3.0E-74 T 10-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMQ28_11055 b0c47144b00728a83b1cafeb25b952ae 192 Pfam PF01923 Cobalamin adenosyltransferase 8 172 3.5E-53 T 10-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMQ28_11055 b0c47144b00728a83b1cafeb25b952ae 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 185 1.2E-50 T 10-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMQ28_11055 b0c47144b00728a83b1cafeb25b952ae 192 Gene3D G3DSA:1.20.1200.10 17 189 4.5E-54 T 10-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMQ28_07275 7ab3458240163ddc1c44a1bbc4c738ed 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 6 127 2.1E-12 T 10-10-2018 IPR007360 Invasion gene expression up-regulator, SirB AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 478 2.2E-125 T 10-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 Pfam PF00361 Proton-conducting membrane transporter 127 423 4.2E-73 T 10-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 478 17.443 T 10-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 8.0E-5 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 8.0E-5 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_04505 d8f358d2fdcbe189895a1a910d356204 497 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 8.0E-5 T 10-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_13465 4f6c9fb20782a353af15739924ceb5f1 191 Pfam PF04186 FxsA cytoplasmic membrane protein 6 113 1.6E-19 T 10-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AMQ28_04605 d9f7cf0f5be61e4ff96c8bfab2c33e87 458 SUPERFAMILY SSF103473 8 438 6.02E-83 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_04605 d9f7cf0f5be61e4ff96c8bfab2c33e87 458 Gene3D G3DSA:1.20.1250.20 7 442 1.7E-76 T 10-10-2018 AMQ28_04605 d9f7cf0f5be61e4ff96c8bfab2c33e87 458 Pfam PF07690 Major Facilitator Superfamily 27 400 7.9E-49 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_05350 65484f305e31ead612772a996cc03e16 330 Gene3D G3DSA:3.90.640.20 217 311 4.5E-26 T 10-10-2018 IPR037126 PdaC/RsiV-like superfamily AMQ28_05350 65484f305e31ead612772a996cc03e16 330 Pfam PF11738 Protein of unknown function (DUF3298) 245 297 2.7E-10 T 10-10-2018 IPR021729 Domain of unknown function DUF3298 AMQ28_13285 caeea9238a356858ec84a09cbadd96be 191 SUPERFAMILY SSF53955 39 191 8.19E-53 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_13285 caeea9238a356858ec84a09cbadd96be 191 Gene3D G3DSA:1.10.530.40 33 191 8.9E-56 T 10-10-2018 AMQ28_13285 caeea9238a356858ec84a09cbadd96be 191 Pfam PF00959 Phage lysozyme 73 184 1.6E-22 T 10-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMQ28_11665 1e45173ebeaae4bcf0ecf427116d3919 357 Pfam PF06674 Protein of unknown function (DUF1176) 30 350 2.7E-89 T 10-10-2018 IPR009560 Protein of unknown function DUF1176 AMQ28_13145 2352db4f7aee32ea605c5e24fa3b673c 468 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 316 451 1.2E-26 T 10-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit AMQ28_13145 2352db4f7aee32ea605c5e24fa3b673c 468 Pfam PF17289 Terminase RNaseH-like domain 305 448 2.8E-20 T 10-10-2018 IPR035421 Terminase, large subunit gp17-like AMQ28_08800 10ac6aaa41faa7354eb9510843138196 264 Pfam PF00905 Penicillin binding protein transpeptidase domain 44 245 4.0E-29 T 10-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMQ28_08800 10ac6aaa41faa7354eb9510843138196 264 Gene3D G3DSA:3.40.710.10 13 261 4.8E-81 T 10-10-2018 AMQ28_08800 10ac6aaa41faa7354eb9510843138196 264 SUPERFAMILY SSF56601 31 246 1.23E-30 T 10-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMQ28_08340 9276a872073cccaa61cb83faa81f2509 205 SUPERFAMILY SSF52833 24 185 4.97E-42 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_08340 9276a872073cccaa61cb83faa81f2509 205 Gene3D G3DSA:3.40.30.10 24 205 3.9E-53 T 10-10-2018 AMQ28_08340 9276a872073cccaa61cb83faa81f2509 205 Pfam PF01323 DSBA-like thioredoxin domain 48 187 4.4E-17 T 10-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMQ28_08340 9276a872073cccaa61cb83faa81f2509 205 PIRSF PIRSF001488 1 205 9.2E-53 T 10-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AMQ28_04000 caaf29099f614fe05d673e0bd6b2802d 176 SMART SM01322 1 174 8.4E-91 T 10-10-2018 IPR009822 YaeQ AMQ28_04000 caaf29099f614fe05d673e0bd6b2802d 176 Pfam PF07152 YaeQ protein 1 171 9.8E-64 T 10-10-2018 IPR009822 YaeQ AMQ28_04000 caaf29099f614fe05d673e0bd6b2802d 176 SUPERFAMILY SSF52980 2 176 2.68E-61 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_04000 caaf29099f614fe05d673e0bd6b2802d 176 PIRSF PIRSF011484 1 176 1.7E-57 T 10-10-2018 IPR009822 YaeQ AMQ28_04000 caaf29099f614fe05d673e0bd6b2802d 176 Gene3D G3DSA:3.10.640.10 1 176 8.6E-66 T 10-10-2018 IPR038590 YaeQ superfamily AMQ28_04780 8951cc47505a246dd09a6f8ed5de4bf7 491 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 10-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMQ28_04780 8951cc47505a246dd09a6f8ed5de4bf7 491 Pfam PF00324 Amino acid permease 18 472 8.7E-135 T 10-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMQ28_04780 8951cc47505a246dd09a6f8ed5de4bf7 491 Gene3D G3DSA:1.20.1740.10 9 481 9.6E-63 T 10-10-2018 AMQ28_04780 8951cc47505a246dd09a6f8ed5de4bf7 491 PIRSF PIRSF006060 1 490 2.3E-85 T 10-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMQ28_10955 c05e771c3e5b397f20252ba732760489 339 SUPERFAMILY SSF53448 3 237 5.91E-46 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_10955 c05e771c3e5b397f20252ba732760489 339 Pfam PF00535 Glycosyl transferase family 2 4 116 1.7E-26 T 10-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMQ28_10955 c05e771c3e5b397f20252ba732760489 339 Gene3D G3DSA:3.90.550.10 1 275 1.5E-51 T 10-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 Gene3D G3DSA:2.40.40.20 1 126 3.7E-51 T 10-10-2018 AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.7E-45 T 10-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 8.0E-61 T 10-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.2E-45 T 10-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 PIRSF PIRSF006246 1 124 4.7E-47 T 10-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 SUPERFAMILY SSF50692 1 122 2.86E-45 T 10-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMQ28_12065 45c88704f3c5b68e788848e4e2240fb7 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 64.354 T 10-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AMQ28_08230 50c83ee014a7d0eca3fcd3a3d9d9d3b9 180 Pfam PF03358 NADPH-dependent FMN reductase 1 137 4.1E-32 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMQ28_08230 50c83ee014a7d0eca3fcd3a3d9d9d3b9 180 Gene3D G3DSA:3.40.50.360 1 179 1.4E-41 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_08230 50c83ee014a7d0eca3fcd3a3d9d9d3b9 180 SUPERFAMILY SSF52218 1 172 9.73E-34 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_04275 fb78a252c8496c410d9af9cdc1864cea 167 SMART SM01040 12 98 2.0E-24 T 10-10-2018 IPR003497 BRO N-terminal domain AMQ28_04275 fb78a252c8496c410d9af9cdc1864cea 167 Pfam PF02498 BRO family, N-terminal domain 13 98 1.1E-19 T 10-10-2018 IPR003497 BRO N-terminal domain AMQ28_05195 938c952ffeeb4a276a4d05150f9dfa99 322 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 153 313 1.3E-22 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMQ28_05195 938c952ffeeb4a276a4d05150f9dfa99 322 SMART SM00331 126 320 4.2E-8 T 10-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMQ28_05195 938c952ffeeb4a276a4d05150f9dfa99 322 Gene3D G3DSA:3.60.40.10 95 320 3.5E-39 T 10-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMQ28_11340 770d984f4f9fa53cbe7d51a1661549b8 630 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 32 340 6.1E-16 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_11340 770d984f4f9fa53cbe7d51a1661549b8 630 SUPERFAMILY SSF52540 30 351 6.42E-9 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_00150 80b1d445bcaeaf4f9609b968eb5f9561 215 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 209 1.4E-26 T 10-10-2018 IPR018635 Uncharacterised protein family UPF0319 AMQ28_02890 f8c0183c03e98e6eead41fd7009c86b3 404 Gene3D G3DSA:1.20.1250.20 11 401 1.3E-43 T 10-10-2018 AMQ28_02890 f8c0183c03e98e6eead41fd7009c86b3 404 SUPERFAMILY SSF103473 5 396 8.63E-55 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_02890 f8c0183c03e98e6eead41fd7009c86b3 404 Pfam PF07690 Major Facilitator Superfamily 28 361 6.5E-31 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_07445 24493a18ccece52d2c60b65ca96c5907 234 Gene3D G3DSA:3.30.420.10 67 210 3.0E-5 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_07445 24493a18ccece52d2c60b65ca96c5907 234 Pfam PF13610 DDE domain 74 212 9.9E-50 T 10-10-2018 IPR032874 DDE domain AMQ28_07445 24493a18ccece52d2c60b65ca96c5907 234 SUPERFAMILY SSF53098 72 191 1.54E-8 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_05595 27900e16780eb273bf0ccb0a5543b54c 77 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 2.2E-18 T 10-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMQ28_05595 27900e16780eb273bf0ccb0a5543b54c 77 Pfam PF02416 mttA/Hcf106 family 4 49 1.1E-12 T 10-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMQ28_05595 27900e16780eb273bf0ccb0a5543b54c 77 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 73 20.335 T 10-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMQ28_03955 31766c511c0168c8f79271431f817fd2 134 Pfam PF13994 PgaD-like protein 6 130 2.6E-23 T 10-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 AMQ28_03955 31766c511c0168c8f79271431f817fd2 134 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 5 133 1.8E-32 T 10-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 AMQ28_11850 b3cabee646a127015e1d6d090693db7f 228 SUPERFAMILY SSF48317 22 225 2.83E-10 T 10-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMQ28_11850 b3cabee646a127015e1d6d090693db7f 228 Pfam PF01569 PAP2 superfamily 97 219 2.7E-8 T 10-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMQ28_01865 4b256eea86279a7b4cd025120ab82030 194 Pfam PF01596 O-methyltransferase 31 161 1.1E-24 T 10-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AMQ28_01865 4b256eea86279a7b4cd025120ab82030 194 SUPERFAMILY SSF53335 14 193 3.25E-32 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_01865 4b256eea86279a7b4cd025120ab82030 194 Gene3D G3DSA:3.40.50.150 5 194 1.2E-44 T 10-10-2018 AMQ28_04490 dd0d4e2aecac76035bcb8fa7a5cc64d9 240 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 1.8E-8 T 10-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMQ28_04490 dd0d4e2aecac76035bcb8fa7a5cc64d9 240 Gene3D G3DSA:2.40.50.140 2 84 3.1E-12 T 10-10-2018 AMQ28_04490 dd0d4e2aecac76035bcb8fa7a5cc64d9 240 SUPERFAMILY SSF50249 2 67 3.67E-10 T 10-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMQ28_04490 dd0d4e2aecac76035bcb8fa7a5cc64d9 240 Pfam PF05901 Excalibur calcium-binding domain 202 235 5.6E-7 T 10-10-2018 IPR008613 Excalibur calcium-binding domain AMQ28_01810 63455e7cd99a4b99502d389e7574f7d2 147 SUPERFAMILY SSF55729 1 143 3.02E-31 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_01810 63455e7cd99a4b99502d389e7574f7d2 147 Pfam PF00583 Acetyltransferase (GNAT) family 32 133 1.1E-13 T 10-10-2018 IPR000182 GNAT domain AMQ28_01810 63455e7cd99a4b99502d389e7574f7d2 147 Gene3D G3DSA:3.40.630.30 2 139 3.2E-32 T 10-10-2018 AMQ28_03790 b56e878fa68496dad9bc12f8c9ac714c 301 Pfam PF04228 Putative neutral zinc metallopeptidase 1 297 6.7E-110 T 10-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PIRSF PIRSF038928 2 489 2.6E-218 T 10-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 Gene3D G3DSA:2.40.180.10 10 492 1.3E-223 T 10-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 SUPERFAMILY SSF56634 12 491 5.63E-210 T 10-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 340 348 - T 10-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 Pfam PF00199 Catalase 14 395 1.3E-185 T 10-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 ProSitePatterns PS00438 Catalase proximal active site signature. 50 66 - T 10-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 Pfam PF06628 Catalase-related immune-responsive 422 483 7.8E-21 T 10-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 295 322 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 327 353 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 111 128 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 90 108 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 130 148 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 PRINTS PR00067 Catalase signature 27 50 5.8E-69 T 10-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_06215 b30fcbe73e1f5daaa891ed246d68939b 506 SMART SM01060 14 398 1.5E-280 T 10-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 AMQ28_10500 48146848636c9f52ba30bcfa944042fe 200 Gene3D G3DSA:2.60.120.620 11 196 9.3E-48 T 10-10-2018 AMQ28_10500 48146848636c9f52ba30bcfa944042fe 200 SUPERFAMILY SSF51197 13 191 3.39E-5 T 10-10-2018 AMQ28_10500 48146848636c9f52ba30bcfa944042fe 200 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 106 194 2.1E-21 T 10-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMQ28_10500 48146848636c9f52ba30bcfa944042fe 200 SMART SM00702 21 194 2.9E-12 T 10-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AMQ28_05895 7fc40fe8f16c7a3c61e7c326a588a45b 150 Pfam PF03724 META domain 37 143 9.9E-22 T 10-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AMQ28_05895 7fc40fe8f16c7a3c61e7c326a588a45b 150 Gene3D G3DSA:2.40.128.270 34 145 1.4E-19 T 10-10-2018 IPR038670 HslJ-like superfamily AMQ28_00640 735675e70cf38841a8fdd8e6f6428f2b 457 Gene3D G3DSA:1.20.1250.20 20 431 3.3E-75 T 10-10-2018 AMQ28_00640 735675e70cf38841a8fdd8e6f6428f2b 457 Pfam PF07690 Major Facilitator Superfamily 29 317 1.6E-34 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_00640 735675e70cf38841a8fdd8e6f6428f2b 457 SUPERFAMILY SSF103473 12 430 7.98E-84 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_00640 735675e70cf38841a8fdd8e6f6428f2b 457 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_00640 735675e70cf38841a8fdd8e6f6428f2b 457 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 8 403 3.3E-128 T 10-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 AMQ28_08170 1f67d83ddd61e8dbabe5b5eb869bcc82 113 PIRSF PIRSF021239 1 113 2.3E-46 T 10-10-2018 IPR007437 Protein of unknown function DUF486 AMQ28_08170 1f67d83ddd61e8dbabe5b5eb869bcc82 113 Pfam PF04342 Putative member of DMT superfamily (DUF486) 5 110 1.1E-39 T 10-10-2018 IPR007437 Protein of unknown function DUF486 AMQ28_11080 649755b4d6b88dfc35e27968689b5aa6 330 Pfam PF10974 Protein of unknown function (DUF2804) 7 329 6.6E-63 T 10-10-2018 IPR021243 Protein of unknown function DUF2804 AMQ28_13185 b38b81eaa4d7c59fa5a25d1e347fe347 165 Pfam PF05069 Phage virion morphogenesis family 13 154 4.5E-18 T 10-10-2018 IPR006522 Phage virion morphogensis protein AMQ28_11395 234e7a14415c2fc618f1db0c26916f85 130 Gene3D G3DSA:3.30.429.10 1 125 1.6E-33 T 10-10-2018 IPR014347 Tautomerase/MIF superfamily AMQ28_11395 234e7a14415c2fc618f1db0c26916f85 130 SUPERFAMILY SSF55331 2 119 6.41E-25 T 10-10-2018 IPR014347 Tautomerase/MIF superfamily AMQ28_11395 234e7a14415c2fc618f1db0c26916f85 130 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 117 1.5E-8 T 10-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 AMQ28_09770 e1f1ef2cf514582024354e48229deddb 296 PIRSF PIRSF007580 7 283 4.0E-66 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_09770 e1f1ef2cf514582024354e48229deddb 296 Pfam PF10118 Predicted metal-dependent hydrolase 23 265 2.2E-75 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_13725 2832983258dec8e6067a1b736d214dbb 304 SUPERFAMILY SSF48452 195 292 2.72E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_13725 2832983258dec8e6067a1b736d214dbb 304 Gene3D G3DSA:1.25.40.10 182 293 3.0E-6 T 10-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMQ28_11775 bc0a519b6ac41caf78f22f60072d05a7 236 Pfam PF03591 AzlC protein 25 164 9.5E-35 T 10-10-2018 IPR011606 Branched-chain amino acid transport, permease AMQ28_05610 d987956c487e1e820f8ee62fb0380003 749 SUPERFAMILY SSF63829 447 702 7.19E-7 T 10-10-2018 AMQ28_05610 d987956c487e1e820f8ee62fb0380003 749 Pfam PF05787 Bacterial protein of unknown function (DUF839) 95 703 1.1E-140 T 10-10-2018 IPR008557 Protein of unknown function DUF839 AMQ28_06325 092661eb1454c7cdd9501e6f6b6a2f6d 429 SUPERFAMILY SSF53474 45 207 8.56E-6 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_12515 d8e6f619478656f9deb0721b6cec0336 210 SUPERFAMILY SSF101327 7 166 7.19E-35 T 10-10-2018 IPR036255 YgfB-like superfamily AMQ28_12515 d8e6f619478656f9deb0721b6cec0336 210 Gene3D G3DSA:1.20.120.740 2 179 7.6E-39 T 10-10-2018 AMQ28_12515 d8e6f619478656f9deb0721b6cec0336 210 Pfam PF03695 Uncharacterised protein family (UPF0149) 22 164 2.2E-22 T 10-10-2018 IPR011978 Uncharacterised protein family UPF0149 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 Gene3D G3DSA:2.60.120.10 14 85 3.1E-7 T 10-10-2018 IPR014710 RmlC-like jelly roll fold AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 SUPERFAMILY SSF46689 212 254 3.37E-7 T 10-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 Gene3D G3DSA:1.10.10.60 157 254 1.1E-18 T 10-10-2018 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 SUPERFAMILY SSF51182 18 186 1.78E-12 T 10-10-2018 IPR011051 RmlC-like cupin domain superfamily AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 Pfam PF02311 AraC-like ligand binding domain 22 87 9.9E-6 T 10-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 Pfam PF12833 Helix-turn-helix domain 180 253 8.0E-18 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 1.1E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 1.1E-5 T 10-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMQ28_07625 41f4676bf21a5d0dd610ed21a56839c4 254 SMART SM00342 171 254 2.1E-17 T 10-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMQ28_03565 72ccad62e12b5bbe25b4b06ce098d050 146 SUPERFAMILY SSF46785 4 141 1.36E-33 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_03565 72ccad62e12b5bbe25b4b06ce098d050 146 Gene3D G3DSA:1.10.10.10 2 146 8.1E-41 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_03565 72ccad62e12b5bbe25b4b06ce098d050 146 Pfam PF01638 HxlR-like helix-turn-helix 18 104 2.2E-19 T 10-10-2018 IPR002577 Helix-turn-helix, HxlR type AMQ28_02780 3755ed24f18b5afc6046dfb38e3f74b6 463 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 220 460 4.0E-64 T 10-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMQ28_02780 3755ed24f18b5afc6046dfb38e3f74b6 463 Pfam PF11812 Domain of unknown function (DUF3333) 31 194 1.7E-41 T 10-10-2018 IPR024573 Domain of unknown function DUF3333 AMQ28_02780 3755ed24f18b5afc6046dfb38e3f74b6 463 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 259 458 4.2E-20 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_02780 3755ed24f18b5afc6046dfb38e3f74b6 463 Gene3D G3DSA:1.10.3720.10 233 461 1.2E-33 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_02780 3755ed24f18b5afc6046dfb38e3f74b6 463 SUPERFAMILY SSF161098 236 448 1.27E-35 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_01255 3605ef8ca6c77664d03af047eaddbfc1 909 Gene3D G3DSA:3.10.20.310 325 412 2.1E-15 T 10-10-2018 AMQ28_01255 3605ef8ca6c77664d03af047eaddbfc1 909 Gene3D G3DSA:2.40.160.50 577 909 2.1E-97 T 10-10-2018 AMQ28_01255 3605ef8ca6c77664d03af047eaddbfc1 909 Pfam PF01103 Surface antigen 606 906 9.5E-39 T 10-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMQ28_01255 3605ef8ca6c77664d03af047eaddbfc1 909 Pfam PF17243 POTRA domain TamA domain 1 262 323 2.0E-7 T 10-10-2018 IPR035243 TamA, POTRA domain 1 AMQ28_01255 3605ef8ca6c77664d03af047eaddbfc1 909 Gene3D G3DSA:3.10.20.310 413 498 5.5E-5 T 10-10-2018 AMQ28_08490 337a88e6d44027b59d6daf56d9aa56dd 293 Pfam PF13612 Transposase DDE domain 104 254 2.0E-27 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_13085 a9c914a7d73553e77cb94152900cc520 292 Gene3D G3DSA:1.10.10.10 24 120 1.2E-14 T 10-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMQ28_13085 a9c914a7d73553e77cb94152900cc520 292 Pfam PF04492 Bacteriophage replication protein O 30 111 1.7E-10 T 10-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 AMQ28_06640 357df8af70bfc6564320b044b9df73b6 306 SUPERFAMILY SSF103481 162 282 6.28E-5 T 10-10-2018 AMQ28_06640 357df8af70bfc6564320b044b9df73b6 306 Pfam PF00892 EamA-like transporter family 7 138 4.7E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_06640 357df8af70bfc6564320b044b9df73b6 306 Pfam PF00892 EamA-like transporter family 151 282 1.4E-12 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_06640 357df8af70bfc6564320b044b9df73b6 306 SUPERFAMILY SSF103481 41 138 1.57E-12 T 10-10-2018 AMQ28_09010 510454802171e2d14eea587f6ff931ba 87 Pfam PF13359 DDE superfamily endonuclease 1 82 3.1E-9 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_01885 bd801452a396719ca1182b9f985b0d20 230 Pfam PF01988 VIT family 18 225 7.1E-53 T 10-10-2018 IPR008217 Ccc1 family AMQ28_10835 8a78300b408dca572d5d67ba8485d835 274 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 46 252 2.5E-73 T 10-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMQ28_10835 8a78300b408dca572d5d67ba8485d835 274 SUPERFAMILY SSF53098 3 222 1.19E-33 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_10835 8a78300b408dca572d5d67ba8485d835 274 Gene3D G3DSA:3.30.420.10 5 214 4.8E-21 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_08275 a39748462ac561a3acd4fb6c5c35d1f0 271 Gene3D G3DSA:1.10.3720.10 65 257 5.0E-27 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_08275 a39748462ac561a3acd4fb6c5c35d1f0 271 SUPERFAMILY SSF161098 68 250 1.13E-34 T 10-10-2018 IPR035906 MetI-like superfamily AMQ28_08275 a39748462ac561a3acd4fb6c5c35d1f0 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 260 1.4E-27 T 10-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMQ28_11400 f7c0c081bdb3787664b2031a243458c8 255 Gene3D G3DSA:3.40.1190.20 1 237 5.9E-78 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_11400 f7c0c081bdb3787664b2031a243458c8 255 SUPERFAMILY SSF53613 2 240 2.95E-59 T 10-10-2018 IPR029056 Ribokinase-like AMQ28_11400 f7c0c081bdb3787664b2031a243458c8 255 Pfam PF08543 Phosphomethylpyrimidine kinase 12 241 4.8E-68 T 10-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMQ28_13125 b1387d97fb64590e504835ef266a1ccd 357 SUPERFAMILY SSF81301 36 205 1.05E-27 T 10-10-2018 AMQ28_13125 b1387d97fb64590e504835ef266a1ccd 357 Gene3D G3DSA:3.30.460.10 27 177 9.7E-31 T 10-10-2018 AMQ28_13125 b1387d97fb64590e504835ef266a1ccd 357 Pfam PF04607 Region found in RelA / SpoT proteins 74 185 5.1E-19 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 AMQ28_13125 b1387d97fb64590e504835ef266a1ccd 357 SMART SM00954 74 196 2.7E-18 T 10-10-2018 IPR007685 RelA/SpoT GO:0015969 AMQ28_05890 b104f3abef1c72de80b314952dd660b1 357 Pfam PF13387 Domain of unknown function (DUF4105) 136 291 1.0E-44 T 10-10-2018 IPR025178 Domain of unknown function DUF4105 AMQ28_09910 746379c4ebac9f6e3d5bab3c3949faf0 342 Pfam PF03280 Proteobacterial lipase chaperone protein 131 321 1.2E-51 T 10-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 AMQ28_09910 746379c4ebac9f6e3d5bab3c3949faf0 342 SUPERFAMILY SSF158855 60 333 1.14E-85 T 10-10-2018 AMQ28_09910 746379c4ebac9f6e3d5bab3c3949faf0 342 Hamap MF_00790 Lipase chaperone [lifO]. 2 330 19.812 T 10-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 AMQ28_00800 343cc99536ad8144225d658450b53b86 294 Pfam PF12706 Beta-lactamase superfamily domain 54 257 2.0E-11 T 10-10-2018 IPR001279 Metallo-beta-lactamase AMQ28_00800 343cc99536ad8144225d658450b53b86 294 Gene3D G3DSA:3.60.15.10 33 293 7.3E-70 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_00800 343cc99536ad8144225d658450b53b86 294 SUPERFAMILY SSF56281 38 293 1.49E-18 T 10-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMQ28_03275 1787372ae89bc812d0ec6ae11b51c5bd 376 Pfam PF12698 ABC-2 family transporter protein 17 363 2.6E-27 T 10-10-2018 AMQ28_03275 1787372ae89bc812d0ec6ae11b51c5bd 376 Gene3D G3DSA:3.40.1710.10 39 155 2.9E-7 T 10-10-2018 AMQ28_06500 fc40dd4bb9d90ca3da18b86ba77c5491 472 SUPERFAMILY SSF52540 281 470 4.85E-25 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_06500 fc40dd4bb9d90ca3da18b86ba77c5491 472 Gene3D G3DSA:3.40.50.300 228 472 1.0E-90 T 10-10-2018 AMQ28_06500 fc40dd4bb9d90ca3da18b86ba77c5491 472 Gene3D G3DSA:3.40.50.300 4 225 5.6E-41 T 10-10-2018 AMQ28_06500 fc40dd4bb9d90ca3da18b86ba77c5491 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 29 224 1.1E-23 T 10-10-2018 IPR022488 Polyphosphate kinase-2-related AMQ28_06500 fc40dd4bb9d90ca3da18b86ba77c5491 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 255 471 8.0E-79 T 10-10-2018 IPR022488 Polyphosphate kinase-2-related AMQ28_06890 d3e01953a149195a278eeb85a9e4e57a 250 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 30 250 4.0E-36 T 10-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMQ28_06890 d3e01953a149195a278eeb85a9e4e57a 250 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 7 250 6.6E-45 T 10-10-2018 IPR010239 Conserved hypothetical protein CHP02001 AMQ28_04860 2ed7a9edd3efefe124a291b068e98c02 239 Gene3D G3DSA:3.40.50.1820 2 238 3.5E-11 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_04860 2ed7a9edd3efefe124a291b068e98c02 239 SUPERFAMILY SSF53474 5 235 1.57E-11 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_07050 397f55c8b0de9caf9bb4a934c457b3e1 384 Gene3D G3DSA:3.10.350.10 57 102 8.5E-14 T 10-10-2018 IPR036779 LysM domain superfamily AMQ28_07050 397f55c8b0de9caf9bb4a934c457b3e1 384 Pfam PF01476 LysM domain 58 102 7.7E-15 T 10-10-2018 IPR018392 LysM domain AMQ28_07050 397f55c8b0de9caf9bb4a934c457b3e1 384 SUPERFAMILY SSF54106 56 104 1.31E-7 T 10-10-2018 AMQ28_12205 fad7a6ca4a51178fab7895864c740287 311 PIRSF PIRSF007580 11 293 1.1E-49 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_12205 fad7a6ca4a51178fab7895864c740287 311 Pfam PF10118 Predicted metal-dependent hydrolase 24 277 1.2E-60 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_08010 9aba0fe296800b01566663ca893a9c2a 304 SUPERFAMILY SSF55486 238 302 2.24E-15 T 10-10-2018 AMQ28_08010 9aba0fe296800b01566663ca893a9c2a 304 Pfam PF00413 Matrixin 43 298 5.5E-13 T 10-10-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 AMQ28_08010 9aba0fe296800b01566663ca893a9c2a 304 Gene3D G3DSA:3.40.390.10 184 304 8.6E-15 T 10-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMQ28_08980 f14008a390452f3c431e806b3001681c 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 90 7.5E-14 T 10-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMQ28_08980 f14008a390452f3c431e806b3001681c 106 Gene3D G3DSA:3.10.20.30 1 105 6.6E-37 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_08980 f14008a390452f3c431e806b3001681c 106 PRINTS PR00355 Adrenodoxin signature 59 73 1.0E-6 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_08980 f14008a390452f3c431e806b3001681c 106 PRINTS PR00355 Adrenodoxin signature 40 50 1.0E-6 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_08980 f14008a390452f3c431e806b3001681c 106 PRINTS PR00355 Adrenodoxin signature 82 90 1.0E-6 T 10-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMQ28_08980 f14008a390452f3c431e806b3001681c 106 SUPERFAMILY SSF54292 4 105 1.48E-30 T 10-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMQ28_04620 51a1c480730ca8b3582b6690d8504167 391 SUPERFAMILY SSF56529 162 367 4.97E-26 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_04620 51a1c480730ca8b3582b6690d8504167 391 Gene3D G3DSA:3.90.850.10 148 370 1.2E-43 T 10-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMQ28_04620 51a1c480730ca8b3582b6690d8504167 391 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 217 365 1.2E-7 T 10-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMQ28_07800 685cb6f689683c26b4968dc19950b895 120 Pfam PF01230 HIT domain 27 105 8.0E-12 T 10-10-2018 IPR001310 Histidine triad (HIT) protein AMQ28_07800 685cb6f689683c26b4968dc19950b895 120 Gene3D G3DSA:3.30.428.10 1 118 1.3E-23 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_07800 685cb6f689683c26b4968dc19950b895 120 SUPERFAMILY SSF54197 4 116 8.66E-24 T 10-10-2018 IPR036265 HIT-like superfamily AMQ28_05465 23eaa145d5bb0a308dbcf4541d47c927 284 SUPERFAMILY SSF53335 50 257 2.27E-30 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_05465 23eaa145d5bb0a308dbcf4541d47c927 284 Gene3D G3DSA:3.40.50.150 35 272 3.4E-21 T 10-10-2018 AMQ28_05465 23eaa145d5bb0a308dbcf4541d47c927 284 Pfam PF04072 Leucine carboxyl methyltransferase 58 181 1.5E-12 T 10-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 AMQ28_11820 0c48864bff90ccfdc583dc23f80054d5 206 SUPERFAMILY SSF69593 19 159 1.7E-11 T 10-10-2018 AMQ28_11820 0c48864bff90ccfdc583dc23f80054d5 206 SMART SM00563 46 158 2.9E-14 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_11820 0c48864bff90ccfdc583dc23f80054d5 206 Pfam PF01553 Acyltransferase 46 151 3.8E-6 T 10-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMQ28_01450 9fae31d2072392687238777c8cf03285 332 SUPERFAMILY SSF46785 14 58 2.56E-7 T 10-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMQ28_01450 9fae31d2072392687238777c8cf03285 332 Pfam PF13280 WYL domain 158 329 1.2E-23 T 10-10-2018 IPR026881 WYL domain AMQ28_07515 05a28c911314b71a4dfba19cdb5aee93 138 Pfam PF04143 Sulphur transport 38 126 1.7E-8 T 10-10-2018 IPR007272 Sulphur transport domain AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 Pfam PF02321 Outer membrane efflux protein 279 459 2.9E-29 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 Pfam PF02321 Outer membrane efflux protein 66 250 1.5E-26 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 SUPERFAMILY SSF56954 10 462 4.58E-101 T 10-10-2018 AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 461 1.8E-102 T 10-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 Gene3D G3DSA:1.20.1600.10 57 461 5.4E-126 T 10-10-2018 AMQ28_11935 308765379cf5b87d806f1b9a7a1ac865 486 Gene3D G3DSA:2.20.200.10 103 350 5.4E-126 T 10-10-2018 AMQ28_03410 c6ab7d3160e09e81f9777cd078161fb1 278 SUPERFAMILY SSF51730 3 276 8.44E-84 T 10-10-2018 IPR029041 FAD-linked oxidoreductase-like AMQ28_03410 c6ab7d3160e09e81f9777cd078161fb1 278 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 272 6.8E-90 T 10-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AMQ28_03410 c6ab7d3160e09e81f9777cd078161fb1 278 Gene3D G3DSA:3.20.20.220 1 278 1.3E-88 T 10-10-2018 AMQ28_03410 c6ab7d3160e09e81f9777cd078161fb1 278 Pfam PF02219 Methylenetetrahydrofolate reductase 3 272 5.1E-78 T 10-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMQ28_08945 ed49d881080dc918f4ce1ecf255cea63 101 SUPERFAMILY SSF48295 2 59 3.71E-10 T 10-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMQ28_12430 a6062ba9b6630134a26baab5c1df2ea8 255 Pfam PF14302 Domain of unknown function (DUF4377) 167 251 8.6E-24 T 10-10-2018 IPR025485 Domain of unknown function DUF4377 AMQ28_12430 a6062ba9b6630134a26baab5c1df2ea8 255 Pfam PF03724 META domain 47 118 1.1E-14 T 10-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AMQ28_12430 a6062ba9b6630134a26baab5c1df2ea8 255 Gene3D G3DSA:2.40.128.270 32 152 3.2E-12 T 10-10-2018 IPR038670 HslJ-like superfamily AMQ28_05805 df654e0dae72e34494d379fce15ec3d4 767 Pfam PF00577 Outer membrane usher protein 149 662 7.3E-32 T 10-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 AMQ28_05805 df654e0dae72e34494d379fce15ec3d4 767 Gene3D G3DSA:2.60.40.3110 222 304 7.2E-8 T 10-10-2018 AMQ28_12655 666c72c387d6288c27375c379e8fdd72 554 Pfam PF02652 L-lactate permease 18 545 1.9E-214 T 10-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMQ28_12655 666c72c387d6288c27375c379e8fdd72 554 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 547 6.2E-224 T 10-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMQ28_06275 6a2b6d838df76f0205a9d6970f55d150 86 Pfam PF04024 PspC domain 6 63 1.7E-20 T 10-10-2018 IPR007168 Phage shock protein, PspC, N-terminal AMQ28_00270 19db37ee808a463db501f951108d9652 521 Pfam PF03929 PepSY-associated TM region 10 358 6.6E-58 T 10-10-2018 IPR005625 PepSY-associated TM protein AMQ28_08535 a1f771a8263499212a3cb1e57c9ee69a 180 Gene3D G3DSA:1.25.40.20 2 179 3.1E-15 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMQ28_08535 a1f771a8263499212a3cb1e57c9ee69a 180 SUPERFAMILY SSF48403 8 138 3.73E-10 T 10-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMQ28_05905 82d47b761015ab723a53fc6422976857 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 132 1.5E-28 T 10-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMQ28_05905 82d47b761015ab723a53fc6422976857 134 Gene3D G3DSA:3.30.420.270 61 130 1.0E-12 T 10-10-2018 AMQ28_09925 893a770e3021cf5ff474cca4ce91e5d4 152 Gene3D G3DSA:1.20.120.520 1 139 7.9E-8 T 10-10-2018 AMQ28_09925 893a770e3021cf5ff474cca4ce91e5d4 152 Pfam PF01814 Hemerythrin HHE cation binding domain 3 119 1.6E-12 T 10-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AMQ28_03265 2c7d34e6db10ca745049794b6fc095e1 507 SUPERFAMILY SSF56954 32 490 3.66E-47 T 10-10-2018 AMQ28_03265 2c7d34e6db10ca745049794b6fc095e1 507 Pfam PF02321 Outer membrane efflux protein 64 291 4.3E-12 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_03265 2c7d34e6db10ca745049794b6fc095e1 507 Pfam PF02321 Outer membrane efflux protein 332 486 2.9E-15 T 10-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMQ28_02160 792f1318c1946c40cad44755c5ee5c1b 290 SUPERFAMILY SSF53474 2 287 1.05E-39 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_02160 792f1318c1946c40cad44755c5ee5c1b 290 Pfam PF00561 alpha/beta hydrolase fold 11 272 8.8E-16 T 10-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMQ28_09705 231b5dea1273a7f69bd3705ae4ea53e9 372 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 370 23.35 T 10-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09705 231b5dea1273a7f69bd3705ae4ea53e9 372 ProSitePatterns PS01348 MraY family signature 2. 201 212 - T 10-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09705 231b5dea1273a7f69bd3705ae4ea53e9 372 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 372 1.4E-123 T 10-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_09705 231b5dea1273a7f69bd3705ae4ea53e9 372 Pfam PF00953 Glycosyl transferase family 4 99 296 6.9E-33 T 10-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMQ28_09705 231b5dea1273a7f69bd3705ae4ea53e9 372 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 10-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMQ28_02445 3c6e6f9ff3a9bbfe921b0285954b394b 440 Pfam PF00860 Permease family 28 399 2.7E-58 T 10-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 AMQ28_02445 3c6e6f9ff3a9bbfe921b0285954b394b 440 PIRSF PIRSF005353 2 439 2.0E-187 T 10-10-2018 IPR026033 Purine permease PbuG-like AMQ28_06960 9a43cf3555d49dde5dcfd111597fa050 637 SUPERFAMILY SSF51004 63 295 3.92E-16 T 10-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily AMQ28_06960 9a43cf3555d49dde5dcfd111597fa050 637 Gene3D G3DSA:2.130.10.10 53 313 1.2E-14 T 10-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMQ28_00830 33e25cb5e59e06848b66e2a053314896 87 Pfam PF10985 Protein of unknown function (DUF2805) 13 83 5.7E-35 T 10-10-2018 IPR019882 Conserved hypothetical protein CHP03643 AMQ28_00830 33e25cb5e59e06848b66e2a053314896 87 TIGRFAM TIGR03643 TIGR03643: TIGR03643 family protein 11 82 2.4E-36 T 10-10-2018 IPR019882 Conserved hypothetical protein CHP03643 AMQ28_00035 aeb4a87baa949d10dd7748aada313e8f 366 SUPERFAMILY SSF56935 15 366 5.19E-47 T 10-10-2018 AMQ28_00035 aeb4a87baa949d10dd7748aada313e8f 366 Pfam PF13609 Gram-negative porin 7 344 6.2E-30 T 10-10-2018 AMQ28_00035 aeb4a87baa949d10dd7748aada313e8f 366 Gene3D G3DSA:2.40.160.10 15 366 1.4E-52 T 10-10-2018 IPR023614 Porin domain superfamily AMQ28_12550 ea4bdd0405d4cf5d1f56239e09b2ed97 227 Pfam PF04972 BON domain 61 113 1.0E-11 T 10-10-2018 IPR007055 BON domain AMQ28_01770 e769e2c9bb8a4ae9c38daf2b2a7142f5 820 Pfam PF04453 Organic solvent tolerance protein 344 727 8.3E-83 T 10-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AMQ28_01770 e769e2c9bb8a4ae9c38daf2b2a7142f5 820 Pfam PF03968 OstA-like protein 104 236 2.6E-10 T 10-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMQ28_01770 e769e2c9bb8a4ae9c38daf2b2a7142f5 820 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 12 794 19.155 T 10-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AMQ28_01710 b5520b8f17b655c219ddcac2fcd720a4 113 Pfam PF07238 PilZ domain 9 83 5.6E-8 T 10-10-2018 IPR009875 PilZ domain GO:0035438 AMQ28_01710 b5520b8f17b655c219ddcac2fcd720a4 113 Gene3D G3DSA:2.40.10.220 2 113 1.7E-33 T 10-10-2018 AMQ28_09755 2ead916e51e17b40b2ac0e6b60ab6d57 289 Gene3D G3DSA:3.30.70.1070 85 180 1.0E-8 T 10-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMQ28_10435 138c22e166957c8430aa764a1a6e7f9f 237 Pfam PF11306 Protein of unknown function (DUF3108) 29 223 7.4E-23 T 10-10-2018 IPR021457 Protein of unknown function DUF3108 AMQ28_07060 f8fa3f93ca663e743c578f361428c28d 189 SUPERFAMILY SSF55821 5 187 1.4E-42 T 10-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMQ28_07060 f8fa3f93ca663e743c578f361428c28d 189 Pfam PF01300 Telomere recombination 11 188 9.5E-34 T 10-10-2018 IPR006070 YrdC-like domain GO:0003725 AMQ28_07060 f8fa3f93ca663e743c578f361428c28d 189 Gene3D G3DSA:3.90.870.10 2 188 2.8E-51 T 10-10-2018 AMQ28_07060 f8fa3f93ca663e743c578f361428c28d 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 188 34.355 T 10-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 AMQ28_05340 5dfaa3068713a7064de5e82263c8d5a8 244 Pfam PF12811 Bax inhibitor 1 like 5 241 2.7E-61 T 10-10-2018 IPR010539 Protein of unknown function UCP009160 AMQ28_05340 5dfaa3068713a7064de5e82263c8d5a8 244 PIRSF PIRSF009160 1 244 1.0E-77 T 10-10-2018 IPR010539 Protein of unknown function UCP009160 AMQ28_12060 b99876dc829e842cf5f6929e1771be3c 165 Pfam PF06945 Protein of unknown function (DUF1289) 10 54 3.1E-14 T 10-10-2018 IPR010710 Protein of unknown function DUF1289 AMQ28_12790 5ffaf93daac08f2761478c234ace0043 443 Pfam PF03929 PepSY-associated TM region 13 372 1.2E-52 T 10-10-2018 IPR005625 PepSY-associated TM protein AMQ28_06900 b0076b01d937ddc253ca590884ebcf23 437 Gene3D G3DSA:2.40.160.10 11 437 8.1E-137 T 10-10-2018 IPR023614 Porin domain superfamily AMQ28_06900 b0076b01d937ddc253ca590884ebcf23 437 Pfam PF03573 outer membrane porin, OprD family 30 435 5.1E-110 T 10-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 AMQ28_02970 22022077b5fec30391d521864ac84fb1 138 Pfam PF03061 Thioesterase superfamily 47 118 4.8E-9 T 10-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMQ28_02970 22022077b5fec30391d521864ac84fb1 138 SUPERFAMILY SSF54637 17 133 1.89E-19 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_02970 22022077b5fec30391d521864ac84fb1 138 Gene3D G3DSA:3.10.129.10 4 138 3.8E-44 T 10-10-2018 AMQ28_04030 b990a0c63ab6cd468c7f7a3b306cf2a7 409 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 408 23.784 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_04030 b990a0c63ab6cd468c7f7a3b306cf2a7 409 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 9 407 4.6E-140 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_04030 b990a0c63ab6cd468c7f7a3b306cf2a7 409 Pfam PF03616 Sodium/glutamate symporter 5 377 1.0E-129 T 10-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AMQ28_08455 58592513663dd9a24086c373965766a3 283 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 55 281 2.1E-68 T 10-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMQ28_08455 58592513663dd9a24086c373965766a3 283 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 16 283 42.655 T 10-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMQ28_08455 58592513663dd9a24086c373965766a3 283 Pfam PF02666 Phosphatidylserine decarboxylase 69 280 9.6E-59 T 10-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 111 123 4.5E-13 T 10-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 174 193 4.5E-13 T 10-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 423 445 4.5E-13 T 10-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 446 460 4.5E-13 T 10-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 Pfam PF01555 DNA methylase 111 467 4.3E-35 T 10-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 PIRSF PIRSF015855 2 658 6.8E-172 T 10-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 SUPERFAMILY SSF53335 79 493 1.47E-61 T 10-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_05380 f290174e7f7837fd4544a97b25168d24 659 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 114 120 - T 10-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMQ28_01350 9f0abe8df43119c2c3c698cf4cf68803 153 Pfam PF05360 yiaA/B two helix domain 75 127 5.5E-21 T 10-10-2018 IPR008024 YiaAB two helix AMQ28_01350 9f0abe8df43119c2c3c698cf4cf68803 153 Pfam PF05360 yiaA/B two helix domain 12 64 1.7E-20 T 10-10-2018 IPR008024 YiaAB two helix AMQ28_02040 506543be7337302fe549bf0ef6993111 198 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 37 51 - T 10-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_02040 506543be7337302fe549bf0ef6993111 198 SUPERFAMILY SSF55120 1 197 1.76E-55 T 10-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_02040 506543be7337302fe549bf0ef6993111 198 Gene3D G3DSA:3.30.2350.10 1 197 1.7E-60 T 10-10-2018 AMQ28_02040 506543be7337302fe549bf0ef6993111 198 Pfam PF00849 RNA pseudouridylate synthase 1 148 7.6E-28 T 10-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMQ28_11655 30cc0e3bd405b8033f207a5bd1932cd5 181 Pfam PF02417 Chromate transporter 18 175 1.8E-30 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMQ28_06680 8a068df5fa9d851555c8ce1b18b87f7b 692 Pfam PF04632 Fusaric acid resistance protein family 16 685 1.1E-151 T 10-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 AMQ28_09980 fab62b38a957bca9143abd124235463e 155 Pfam PF10107 Endonuclease related to archaeal Holliday junction resolvase 35 150 9.0E-27 T 10-10-2018 IPR019287 Holliday junction resolvase-related domain AMQ28_13325 d5835ddc3d0c79bb1641f51d7d0d40dd 386 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 16 375 3.1E-46 T 10-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB AMQ28_13325 d5835ddc3d0c79bb1641f51d7d0d40dd 386 SUPERFAMILY SSF103473 6 385 4.32E-30 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_13325 d5835ddc3d0c79bb1641f51d7d0d40dd 386 Gene3D G3DSA:1.20.1250.20 6 386 4.6E-16 T 10-10-2018 AMQ28_05345 3aecd25d7c207193d54989905afc3208 273 PIRSF PIRSF005902 1 273 1.1E-60 T 10-10-2018 IPR001130 TatD family GO:0016788 AMQ28_05345 3aecd25d7c207193d54989905afc3208 273 Gene3D G3DSA:3.20.20.140 1 270 5.9E-71 T 10-10-2018 AMQ28_05345 3aecd25d7c207193d54989905afc3208 273 SUPERFAMILY SSF51556 5 270 2.45E-69 T 10-10-2018 IPR032466 Metal-dependent hydrolase AMQ28_05345 3aecd25d7c207193d54989905afc3208 273 Pfam PF01026 TatD related DNase 6 269 2.1E-57 T 10-10-2018 IPR001130 TatD family GO:0016788 AMQ28_05345 3aecd25d7c207193d54989905afc3208 273 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 5 13 - T 10-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMQ28_09815 407c948e97768e5d45c4a66b7aafa049 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 1.4E-14 T 10-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMQ28_09815 407c948e97768e5d45c4a66b7aafa049 64 Gene3D G3DSA:1.10.10.1100 1 57 3.1E-23 T 10-10-2018 AMQ28_08695 5d9f4776631e3560a19d031c070f5ee4 258 Pfam PF16956 Putative general bacterial porin 1 151 6.5E-17 T 10-10-2018 IPR031593 Putative general bacterial porin AMQ28_08695 5d9f4776631e3560a19d031c070f5ee4 258 SUPERFAMILY SSF56935 31 258 8.42E-13 T 10-10-2018 AMQ28_08695 5d9f4776631e3560a19d031c070f5ee4 258 Gene3D G3DSA:2.40.160.10 12 258 3.3E-6 T 10-10-2018 IPR023614 Porin domain superfamily AMQ28_12725 428190dbe42f529bc07dd844e46ccc1a 628 Pfam PF13387 Domain of unknown function (DUF4105) 122 291 1.4E-55 T 10-10-2018 IPR025178 Domain of unknown function DUF4105 AMQ28_03765 1544537247a5592d5ec8a5a5586a975d 475 SUPERFAMILY SSF52540 45 270 3.36E-15 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03765 1544537247a5592d5ec8a5a5586a975d 475 Pfam PF07693 KAP family P-loop domain 42 297 2.3E-33 T 10-10-2018 IPR011646 KAP family P-loop domain AMQ28_03680 67b54bd6a656e949ac13ec8863cddca9 446 Pfam PF03600 Citrate transporter 13 387 1.1E-50 T 10-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMQ28_03680 67b54bd6a656e949ac13ec8863cddca9 446 TIGRFAM TIGR00784 citMHS: citrate transporter 1 439 2.5E-177 T 10-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 AMQ28_02205 8384b7eced1d108123d8e0980c52058e 616 Pfam PF01435 Peptidase family M48 94 305 1.1E-6 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMQ28_02205 8384b7eced1d108123d8e0980c52058e 616 Gene3D G3DSA:3.30.2010.10 83 170 4.3E-13 T 10-10-2018 AMQ28_01395 810c394646087af111bf07a5589e6191 108 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 2.1E-37 T 10-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AMQ28_01395 810c394646087af111bf07a5589e6191 108 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 19 91 4.5E-17 T 10-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMQ28_11740 b6e0ab8cc9cc21f88dae4315b4a6ffff 396 SUPERFAMILY SSF56935 17 396 1.04E-48 T 10-10-2018 AMQ28_11740 b6e0ab8cc9cc21f88dae4315b4a6ffff 396 Gene3D G3DSA:2.40.160.60 32 396 7.7E-33 T 10-10-2018 AMQ28_11740 b6e0ab8cc9cc21f88dae4315b4a6ffff 396 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 52 378 5.6E-17 T 10-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMQ28_04300 1617b2942b4140bc90f5a5cbedc6a1dd 823 Pfam PF06048 Domain of unknown function (DUF927) 258 535 2.4E-66 T 10-10-2018 IPR009270 Domain of unknown function DUF927 AMQ28_11800 08bd02868ad04871fb45790c6bce7f0d 496 Gene3D G3DSA:1.20.1730.10 22 492 1.4E-93 T 10-10-2018 IPR038377 Sodium/glucose symporter superfamily AMQ28_11800 08bd02868ad04871fb45790c6bce7f0d 496 Pfam PF00474 Sodium:solute symporter family 35 437 5.3E-130 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMQ28_11800 08bd02868ad04871fb45790c6bce7f0d 496 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 10-10-2018 IPR018212 Sodium/solute symporter, conserved site AMQ28_11800 08bd02868ad04871fb45790c6bce7f0d 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 490 3.6E-219 T 10-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 AMQ28_11800 08bd02868ad04871fb45790c6bce7f0d 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 5.6E-117 T 10-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMQ28_06565 d6db9cf1524882f78f4b25a5ad44e83b 132 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 11 99 9.6E-26 T 10-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMQ28_06565 d6db9cf1524882f78f4b25a5ad44e83b 132 Pfam PF03334 Na+/H+ antiporter subunit 12 91 3.2E-24 T 10-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMQ28_00050 d423163331c9006359b51e44ac64de93 187 Gene3D G3DSA:1.10.530.40 25 187 3.1E-52 T 10-10-2018 AMQ28_00050 d423163331c9006359b51e44ac64de93 187 Pfam PF00959 Phage lysozyme 69 179 1.0E-19 T 10-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMQ28_00050 d423163331c9006359b51e44ac64de93 187 SUPERFAMILY SSF53955 36 187 2.2E-48 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_11545 f59b66a620e5b55be58ef9a0400923f4 360 SUPERFAMILY SSF161070 40 356 5.62E-9 T 10-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 AMQ28_11265 b7148a765c1c0120a9228805d367468c 224 Pfam PF04172 LrgB-like family 11 218 1.3E-48 T 10-10-2018 IPR007300 CidB/LrgB family AMQ28_07415 817a3bfa0b5328eff9d52a4e298aa0ed 430 Pfam PF07804 HipA-like C-terminal domain 169 372 1.5E-30 T 10-10-2018 IPR012893 HipA-like, C-terminal AMQ28_07415 817a3bfa0b5328eff9d52a4e298aa0ed 430 PIRSF PIRSF028135 2 429 2.0E-97 T 10-10-2018 IPR016869 Uncharacterised conserved protein UCP028135, HipA-like AMQ28_07235 ac8a1902cf70893acd92e6c4ef4b4c51 312 SUPERFAMILY SSF52980 171 287 6.43E-18 T 10-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMQ28_07235 ac8a1902cf70893acd92e6c4ef4b4c51 312 Pfam PF14338 Mrr N-terminal domain 6 90 8.7E-22 T 10-10-2018 IPR025745 Restriction system protein Mrr-like N-terminal domain AMQ28_07235 ac8a1902cf70893acd92e6c4ef4b4c51 312 Pfam PF04471 Restriction endonuclease 168 284 1.2E-36 T 10-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AMQ28_07235 ac8a1902cf70893acd92e6c4ef4b4c51 312 Gene3D G3DSA:3.40.91.100 137 302 4.9E-6 T 10-10-2018 AMQ28_10510 6380954d1e037686417676b3f5da69cc 275 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 53 217 6.5E-37 T 10-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMQ28_10510 6380954d1e037686417676b3f5da69cc 275 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 87 109 - T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMQ28_10510 6380954d1e037686417676b3f5da69cc 275 Pfam PF01066 CDP-alcohol phosphatidyltransferase 46 109 8.2E-14 T 10-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMQ28_10510 6380954d1e037686417676b3f5da69cc 275 Gene3D G3DSA:1.20.120.1760 38 189 2.4E-13 T 10-10-2018 AMQ28_06935 e90777b00c2744c3d085f07d763a891e 214 Pfam PF03458 UPF0126 domain 5 79 7.7E-20 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 AMQ28_06935 e90777b00c2744c3d085f07d763a891e 214 Pfam PF03458 UPF0126 domain 91 164 1.1E-20 T 10-10-2018 IPR005115 Uncharacterised domain UPF0126 AMQ28_07370 e3b2f6f9fb95875e25a538201b7f62b0 109 Pfam PF14020 Protein of unknown function (DUF4236) 3 57 1.7E-21 T 10-10-2018 IPR025330 Domain of unknown function DUF4236 AMQ28_06995 acc005cb858eb0307ec9fc24146967ab 406 ProSitePatterns PS00216 Sugar transport proteins signature 1. 75 91 - T 10-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMQ28_06995 acc005cb858eb0307ec9fc24146967ab 406 Pfam PF07690 Major Facilitator Superfamily 25 333 8.8E-34 T 10-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMQ28_06995 acc005cb858eb0307ec9fc24146967ab 406 Gene3D G3DSA:1.20.1250.20 14 400 1.5E-47 T 10-10-2018 AMQ28_06995 acc005cb858eb0307ec9fc24146967ab 406 SUPERFAMILY SSF103473 11 397 1.02E-57 T 10-10-2018 IPR036259 MFS transporter superfamily AMQ28_06520 aebbccc5d48322621663f2828be74101 539 Pfam PF03109 ABC1 family 113 231 3.8E-34 T 10-10-2018 IPR004147 UbiB domain AMQ28_06520 aebbccc5d48322621663f2828be74101 539 SUPERFAMILY SSF56112 95 435 8.51E-23 T 10-10-2018 IPR011009 Protein kinase-like domain superfamily AMQ28_06525 d5fe33f60dceca75531433a94c291bb3 359 SUPERFAMILY SSF52151 42 312 1.31E-10 T 10-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMQ28_00995 ce98f5f58bb3dc50a82068a86c142b6e 410 Pfam PF07804 HipA-like C-terminal domain 145 363 1.8E-39 T 10-10-2018 IPR012893 HipA-like, C-terminal AMQ28_00995 ce98f5f58bb3dc50a82068a86c142b6e 410 Gene3D G3DSA:1.10.1070.20 230 407 3.5E-6 T 10-10-2018 AMQ28_00995 ce98f5f58bb3dc50a82068a86c142b6e 410 Pfam PF13657 HipA N-terminal domain 33 106 3.7E-8 T 10-10-2018 IPR017508 HipA, N-terminal subdomain 1 AMQ28_09340 75a4b08c578324fc3e3274f15540af0a 248 Pfam PF01203 Type II secretion system (T2SS), protein N 41 193 6.6E-15 T 10-10-2018 IPR022792 Type II secretion system, protein N AMQ28_10640 62c2b7a4c4aa9e71ddc12ae01d904752 382 SUPERFAMILY SSF56349 69 363 1.32E-26 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_10640 62c2b7a4c4aa9e71ddc12ae01d904752 382 Gene3D G3DSA:1.10.443.10 191 375 1.2E-18 T 10-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMQ28_10640 62c2b7a4c4aa9e71ddc12ae01d904752 382 Pfam PF00589 Phage integrase family 220 364 6.3E-13 T 10-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMQ28_14010 8a40699ca44405fb5d639614245e1c74 71 Pfam PF13586 Transposase DDE domain 11 70 1.3E-14 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_00870 60cb3786f9d3afffd3f264cefdcc2038 330 Pfam PF08908 Domain of unknown function (DUF1852) 1 320 7.6E-183 T 10-10-2018 IPR015004 Protein of unknown function DUF1852 AMQ28_00870 60cb3786f9d3afffd3f264cefdcc2038 330 PIRSF PIRSF034367 1 325 4.2E-190 T 10-10-2018 IPR015004 Protein of unknown function DUF1852 AMQ28_12915 27b54ec73244e0017859f43219432613 76 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 9 69 6.6E-21 T 10-10-2018 IPR018684 Protein of unknown function DUF2171 AMQ28_09125 5181c3f994e50996fd0a598d5759eb1a 626 Pfam PF02705 K+ potassium transporter 15 547 1.3E-200 T 10-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMQ28_09125 5181c3f994e50996fd0a598d5759eb1a 626 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 6 626 33.268 T 10-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMQ28_08270 58b6857c0dcc9c23c849b3f514c4469e 269 SUPERFAMILY SSF52540 35 254 6.23E-65 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_08270 58b6857c0dcc9c23c849b3f514c4469e 269 SMART SM00382 59 236 1.6E-17 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_08270 58b6857c0dcc9c23c849b3f514c4469e 269 Pfam PF00005 ABC transporter 50 186 2.4E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_08270 58b6857c0dcc9c23c849b3f514c4469e 269 Gene3D G3DSA:3.40.50.300 35 265 2.0E-63 T 10-10-2018 AMQ28_04035 218676e0ce307592c37b843929a07a81 453 SUPERFAMILY SSF56935 91 453 2.93E-21 T 10-10-2018 AMQ28_04035 218676e0ce307592c37b843929a07a81 453 Gene3D G3DSA:2.40.160.20 210 375 8.3E-6 T 10-10-2018 AMQ28_08520 464560002f86e9975a081e05bb8d4d32 167 Pfam PF13420 Acetyltransferase (GNAT) domain 5 159 8.6E-23 T 10-10-2018 AMQ28_08520 464560002f86e9975a081e05bb8d4d32 167 SUPERFAMILY SSF55729 4 167 4.49E-32 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_08520 464560002f86e9975a081e05bb8d4d32 167 Gene3D G3DSA:3.40.630.30 3 167 5.9E-49 T 10-10-2018 AMQ28_09805 58e3ff8722a8c80b2812048b0e22f8b7 548 Pfam PF04932 O-Antigen ligase 193 340 1.4E-13 T 10-10-2018 IPR007016 O-antigen ligase-related AMQ28_09805 58e3ff8722a8c80b2812048b0e22f8b7 548 Pfam PF15864 Protein glycosylation ligase 154 179 1.1E-9 T 10-10-2018 IPR031726 Protein glycosylation ligase domain AMQ28_09805 58e3ff8722a8c80b2812048b0e22f8b7 548 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 367 526 1.1E-16 T 10-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal AMQ28_10145 470b65f8fc1b04691f104d98805e4f33 314 Pfam PF10118 Predicted metal-dependent hydrolase 21 290 2.7E-66 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_10145 470b65f8fc1b04691f104d98805e4f33 314 PIRSF PIRSF007580 8 310 1.4E-81 T 10-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 AMQ28_11305 40e1a605a4ae47df82c80d47df282dca 213 Pfam PF03006 Haemolysin-III related 12 203 5.3E-34 T 10-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMQ28_11305 40e1a605a4ae47df82c80d47df282dca 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 13 212 7.0E-57 T 10-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 AMQ28_01620 49a4611998fb9016e27288b08e95e237 382 Hamap MF_01919 Cell division protein ZapE [zapE]. 15 373 50.447 T 10-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 AMQ28_01620 49a4611998fb9016e27288b08e95e237 382 Gene3D G3DSA:3.40.50.300 48 213 4.9E-22 T 10-10-2018 AMQ28_01620 49a4611998fb9016e27288b08e95e237 382 Pfam PF03969 AFG1-like ATPase 16 368 1.1E-128 T 10-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 AMQ28_01620 49a4611998fb9016e27288b08e95e237 382 SUPERFAMILY SSF52540 65 238 6.53E-15 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_02640 9e5213e1ccba33fa749b4fb6c36a6821 100 Pfam PF04328 Selenoprotein, putative 38 100 2.4E-22 T 10-10-2018 IPR007423 Selenoprotein, putative AMQ28_07790 9fe981c7a316050a2d4675e6ff9972da 233 SUPERFAMILY SSF54534 29 228 3.93E-56 T 10-10-2018 AMQ28_07790 9fe981c7a316050a2d4675e6ff9972da 233 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 130 3.2E-25 T 10-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AMQ28_07790 9fe981c7a316050a2d4675e6ff9972da 233 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 137 225 3.6E-26 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_07790 9fe981c7a316050a2d4675e6ff9972da 233 Gene3D G3DSA:3.10.50.40 89 232 1.2E-50 T 10-10-2018 AMQ28_07790 9fe981c7a316050a2d4675e6ff9972da 233 Gene3D G3DSA:1.10.287.460 25 86 1.9E-12 T 10-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 AMQ28_14020 ada4d0f8b9a60942782e9a54ffe5ac0f 192 Pfam PF04970 Lecithin retinol acyltransferase 9 108 4.4E-16 T 10-10-2018 IPR007053 LRAT-like domain AMQ28_08505 e8e9488fef8c60bef5f930e8dec44489 447 Gene3D G3DSA:3.40.50.1820 159 416 6.7E-23 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_08505 e8e9488fef8c60bef5f930e8dec44489 447 Pfam PF07819 PGAP1-like protein 153 375 8.9E-26 T 10-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 AMQ28_08505 e8e9488fef8c60bef5f930e8dec44489 447 SUPERFAMILY SSF53474 156 404 7.37E-18 T 10-10-2018 IPR029058 Alpha/Beta hydrolase fold AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 Pfam PF03471 Transporter associated domain 440 515 1.3E-17 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 Pfam PF00571 CBS domain 376 425 0.0013 T 10-10-2018 IPR000644 CBS domain AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 Gene3D G3DSA:3.30.465.10 439 517 8.1E-19 T 10-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 Gene3D G3DSA:3.10.580.10 289 438 1.7E-38 T 10-10-2018 AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 SMART SM01091 439 519 9.8E-23 T 10-10-2018 IPR005170 Transporter-associated domain AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 SUPERFAMILY SSF54631 294 428 3.07E-20 T 10-10-2018 AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 Pfam PF03741 Integral membrane protein TerC family 17 205 1.3E-49 T 10-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMQ28_06945 5e8054a7a88732176ba6566c8dcd8a2f 525 SUPERFAMILY SSF56176 439 517 1.28E-18 T 10-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMQ28_05515 e6422182f3047c483bc01c3bf4f28054 237 Pfam PF11008 Protein of unknown function (DUF2846) 55 160 2.5E-22 T 10-10-2018 IPR022548 Domain of unknown function DUF2846 AMQ28_01440 2ea1b8a2a117a08f45a5ce4291e9c91c 200 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 3 162 1.6E-10 T 10-10-2018 IPR007296 Domain of unknown function DUF403 AMQ28_05395 5e7f818bb2e3f04c1dd20e0e475ab716 60 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 52 4.6E-17 T 10-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMQ28_05395 5e7f818bb2e3f04c1dd20e0e475ab716 60 SUPERFAMILY SSF46955 5 54 1.41E-8 T 10-10-2018 IPR009061 Putative DNA-binding domain superfamily AMQ28_05395 5e7f818bb2e3f04c1dd20e0e475ab716 60 Gene3D G3DSA:1.10.1660.10 1 54 9.6E-10 T 10-10-2018 AMQ28_05395 5e7f818bb2e3f04c1dd20e0e475ab716 60 Pfam PF12728 Helix-turn-helix domain 6 54 6.1E-19 T 10-10-2018 AMQ28_01540 5c1e9b8ce853e1a33fa5550cfb07d966 390 TIGRFAM TIGR00843 benE: benzoate transporter 9 379 6.2E-106 T 10-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMQ28_01540 5c1e9b8ce853e1a33fa5550cfb07d966 390 Pfam PF03594 Benzoate membrane transport protein 6 381 4.1E-125 T 10-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMQ28_09935 1b29c99026965448e4bf0abf5cb29f49 291 Pfam PF00892 EamA-like transporter family 147 277 8.5E-16 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_09935 1b29c99026965448e4bf0abf5cb29f49 291 Pfam PF00892 EamA-like transporter family 13 133 1.6E-6 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_09935 1b29c99026965448e4bf0abf5cb29f49 291 SUPERFAMILY SSF103481 182 281 4.32E-12 T 10-10-2018 AMQ28_06985 fb58ba4e40c3041fec1155fe333eb0f2 181 Pfam PF10881 Protein of unknown function (DUF2726) 38 136 1.6E-7 T 10-10-2018 IPR024402 Domain of unknown function DUF2726 AMQ28_07935 7b00aa6104a15c42488dbc3e93523771 230 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 7 230 9.6E-63 T 10-10-2018 IPR026387 Outer membrane protein AMQ28_05050 cdd78ce8d3f0bcb175b2f854287ce1ab 91 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 5 88 5.7E-19 T 10-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 AMQ28_05050 cdd78ce8d3f0bcb175b2f854287ce1ab 91 Gene3D G3DSA:3.30.310.50 1 91 3.2E-23 T 10-10-2018 AMQ28_05910 3c6b7ba27cada8a948a59326eda5060a 207 Pfam PF01618 MotA/TolQ/ExbB proton channel family 60 172 6.3E-33 T 10-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMQ28_00715 71c25dde937ceb2ed55695463f4a9ff6 270 SUPERFAMILY SSF54637 166 262 6.34E-7 T 10-10-2018 IPR029069 HotDog domain superfamily AMQ28_00715 71c25dde937ceb2ed55695463f4a9ff6 270 Pfam PF13622 Thioesterase-like superfamily 30 261 2.1E-23 T 10-10-2018 AMQ28_00715 71c25dde937ceb2ed55695463f4a9ff6 270 Gene3D G3DSA:3.10.129.90 39 263 1.3E-11 T 10-10-2018 AMQ28_01005 4efa8a364dc46bf90e9b3c80cbb87e46 78 Pfam PF09905 DNA-binding protein VF530 4 67 1.0E-29 T 10-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 AMQ28_01005 4efa8a364dc46bf90e9b3c80cbb87e46 78 Gene3D G3DSA:1.10.720.30 12 72 9.9E-26 T 10-10-2018 IPR036361 SAP domain superfamily AMQ28_07150 6eeacd6134222f0be78328b6b779de1e 279 Pfam PF01297 Zinc-uptake complex component A periplasmic 23 217 4.7E-22 T 10-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMQ28_07150 6eeacd6134222f0be78328b6b779de1e 279 Gene3D G3DSA:3.40.50.1980 22 172 3.6E-20 T 10-10-2018 AMQ28_07150 6eeacd6134222f0be78328b6b779de1e 279 SUPERFAMILY SSF53807 20 273 5.4E-40 T 10-10-2018 AMQ28_07150 6eeacd6134222f0be78328b6b779de1e 279 Gene3D G3DSA:3.40.50.1980 173 276 3.3E-9 T 10-10-2018 AMQ28_08160 08e15e2213ce31d3adc30488b0f4f411 94 SUPERFAMILY SSF55729 4 93 4.79E-25 T 10-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMQ28_08160 08e15e2213ce31d3adc30488b0f4f411 94 Gene3D G3DSA:3.40.630.30 2 94 5.8E-26 T 10-10-2018 AMQ28_08160 08e15e2213ce31d3adc30488b0f4f411 94 Pfam PF14542 GCN5-related N-acetyl-transferase 14 92 1.0E-22 T 10-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMQ28_02530 1acad58dd8fd4bd4ee20bfd555818af1 56 Gene3D G3DSA:2.10.70.10 19 56 1.3E-17 T 10-10-2018 AMQ28_02530 1acad58dd8fd4bd4ee20bfd555818af1 56 Pfam PF10636 Hemin uptake protein hemP 21 56 2.0E-16 T 10-10-2018 IPR019600 Hemin uptake protein HemP AMQ28_03555 6566aee7b47a966c3cbf809ae408b8e1 445 PIRSF PIRSF002746 3 445 4.9E-139 T 10-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMQ28_03555 6566aee7b47a966c3cbf809ae408b8e1 445 Pfam PF02447 GntP family permease 10 442 1.5E-152 T 10-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMQ28_03555 6566aee7b47a966c3cbf809ae408b8e1 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 13 444 1.0E-156 T 10-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMQ28_03575 c090a1cdf3ebaef66f52eff007c58627 416 SUPERFAMILY SSF51395 6 356 2.03E-95 T 10-10-2018 AMQ28_03575 c090a1cdf3ebaef66f52eff007c58627 416 Gene3D G3DSA:3.20.20.70 9 362 1.4E-110 T 10-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMQ28_03575 c090a1cdf3ebaef66f52eff007c58627 416 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 12 340 1.2E-51 T 10-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMQ28_13330 19f267c0bd3e2f14b8ff01b812264992 411 Gene3D G3DSA:3.40.640.10 61 302 9.0E-141 T 10-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMQ28_13330 19f267c0bd3e2f14b8ff01b812264992 411 Pfam PF00155 Aminotransferase class I and II 42 403 6.4E-49 T 10-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMQ28_13330 19f267c0bd3e2f14b8ff01b812264992 411 SUPERFAMILY SSF53383 11 409 1.2E-96 T 10-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMQ28_13330 19f267c0bd3e2f14b8ff01b812264992 411 Gene3D G3DSA:3.90.1150.10 29 406 9.0E-141 T 10-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMQ28_07065 28485cb6bc34e5fcf8c947366ea0f09f 302 SUPERFAMILY SSF103481 44 147 7.06E-15 T 10-10-2018 AMQ28_07065 28485cb6bc34e5fcf8c947366ea0f09f 302 Pfam PF00892 EamA-like transporter family 159 289 3.0E-20 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_07065 28485cb6bc34e5fcf8c947366ea0f09f 302 Pfam PF00892 EamA-like transporter family 10 144 1.2E-25 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_07065 28485cb6bc34e5fcf8c947366ea0f09f 302 SUPERFAMILY SSF103481 194 293 3.07E-16 T 10-10-2018 AMQ28_07620 b3e1741866c5ce564edd19ff868cbaf8 156 Pfam PF13359 DDE superfamily endonuclease 10 137 2.6E-19 T 10-10-2018 IPR027806 Harbinger transposase-derived nuclease domain AMQ28_04235 12e708d9de6cc94d5582465121ea1f5c 151 Gene3D G3DSA:1.20.5.1230 3 150 1.6E-5 T 10-10-2018 AMQ28_07455 ef0cba9fb334041634a55a63d8078974 535 Gene3D G3DSA:1.10.4160.10 15 476 9.8E-14 T 10-10-2018 IPR038271 Purine-cytosine permease superfamily AMQ28_02750 4944e386e893ea33abd42fa83a932fc7 243 Pfam PF04356 Protein of unknown function (DUF489) 17 230 6.9E-52 T 10-10-2018 IPR007451 High frequency lysogenization protein HflD AMQ28_02750 4944e386e893ea33abd42fa83a932fc7 243 Gene3D G3DSA:1.10.3890.10 13 241 1.8E-58 T 10-10-2018 IPR035932 HflD-like superfamily AMQ28_02750 4944e386e893ea33abd42fa83a932fc7 243 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 20 229 1.0E-99 T 10-10-2018 AMQ28_02750 4944e386e893ea33abd42fa83a932fc7 243 SUPERFAMILY SSF101322 13 236 2.35E-48 T 10-10-2018 IPR035932 HflD-like superfamily AMQ28_05015 09052ace4526946d665c3443b18bcbd7 216 Pfam PF08378 Nuclease-related domain 33 146 5.9E-30 T 10-10-2018 IPR011528 Nuclease-related domain, NERD AMQ28_01675 af6986b2a2fe86e11c1b0c443d1dbd52 198 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 143 3.1E-26 T 10-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AMQ28_01675 af6986b2a2fe86e11c1b0c443d1dbd52 198 SUPERFAMILY SSF55620 1 145 1.11E-29 T 10-10-2018 AMQ28_01675 af6986b2a2fe86e11c1b0c443d1dbd52 198 Gene3D G3DSA:3.30.479.10 1 145 8.6E-23 T 10-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 AMQ28_06845 9523eb043051d0acc96b493d6d2118bc 181 Pfam PF09335 SNARE associated Golgi protein 43 168 1.0E-20 T 10-10-2018 IPR032816 SNARE associated Golgi protein AMQ28_03995 267443e0f9e47d31657732c98c83c294 112 SUPERFAMILY SSF54534 3 110 1.63E-40 T 10-10-2018 AMQ28_03995 267443e0f9e47d31657732c98c83c294 112 Gene3D G3DSA:3.10.50.40 1 112 1.7E-43 T 10-10-2018 AMQ28_03995 267443e0f9e47d31657732c98c83c294 112 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 16 105 8.1E-33 T 10-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMQ28_13095 ec00f159f24ce59b07ab8a1473edf66f 107 Pfam PF02498 BRO family, N-terminal domain 13 98 1.4E-15 T 10-10-2018 IPR003497 BRO N-terminal domain AMQ28_13095 ec00f159f24ce59b07ab8a1473edf66f 107 SMART SM01040 12 98 2.6E-18 T 10-10-2018 IPR003497 BRO N-terminal domain AMQ28_07260 6c649719397003c2e267568923dbb344 196 Pfam PF01810 LysE type translocator 13 159 2.2E-6 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_13365 9aee532a6711370bdb713a5cddc3f41a 251 Pfam PF03591 AzlC protein 24 164 2.2E-33 T 10-10-2018 IPR011606 Branched-chain amino acid transport, permease AMQ28_07900 6a1e9372fbf9e08a26b04c7ac793c71d 436 SUPERFAMILY SSF52833 241 421 2.19E-5 T 10-10-2018 IPR036249 Thioredoxin-like superfamily AMQ28_13965 48378378910a6bfaaae8a4bc4589e6d8 217 Gene3D G3DSA:3.40.109.10 1 217 1.0E-56 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_13965 48378378910a6bfaaae8a4bc4589e6d8 217 Pfam PF00881 Nitroreductase family 8 193 4.3E-21 T 10-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMQ28_13965 48378378910a6bfaaae8a4bc4589e6d8 217 SUPERFAMILY SSF55469 1 215 8.11E-59 T 10-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMQ28_04070 52900a67bc66beb9232bd2e6a8417bf2 153 Pfam PF11042 Protein of unknown function (DUF2750) 24 123 1.6E-19 T 10-10-2018 IPR021284 Protein of unknown function DUF2750 AMQ28_08410 6a42973bf3663246eb19dca92fcdb04c 214 Gene3D G3DSA:3.40.50.850 2 208 2.9E-78 T 10-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMQ28_08410 6a42973bf3663246eb19dca92fcdb04c 214 Pfam PF00857 Isochorismatase family 5 197 2.9E-31 T 10-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMQ28_08410 6a42973bf3663246eb19dca92fcdb04c 214 SUPERFAMILY SSF52499 3 207 6.15E-50 T 10-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 Gene3D G3DSA:3.40.50.300 3 226 9.0E-66 T 10-10-2018 AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 SMART SM00382 34 223 5.4E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 SUPERFAMILY SSF52540 5 225 1.69E-67 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 223 1.1E-94 T 10-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 10-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMQ28_03230 766e2023a9c80dfe2291760ea3f10336 227 Pfam PF00005 ABC transporter 26 174 1.0E-33 T 10-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMQ28_04425 5fcdff32dd35c2a3cf7b89769008cade 207 Pfam PF01810 LysE type translocator 17 203 2.6E-31 T 10-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMQ28_00190 6ec40e257328504944d09552de1aa5ee 177 Gene3D G3DSA:1.10.530.10 40 176 1.0E-26 T 10-10-2018 AMQ28_00190 6ec40e257328504944d09552de1aa5ee 177 Pfam PF01464 Transglycosylase SLT domain 58 164 3.9E-16 T 10-10-2018 IPR008258 Transglycosylase SLT domain 1 AMQ28_00190 6ec40e257328504944d09552de1aa5ee 177 SUPERFAMILY SSF53955 39 169 9.7E-29 T 10-10-2018 IPR023346 Lysozyme-like domain superfamily AMQ28_02505 8f9389062f37d4d45e483e84e0b480c0 88 Pfam PF07023 Protein of unknown function (DUF1315) 4 79 9.1E-34 T 10-10-2018 IPR009749 Protein of unknown function DUF1315 AMQ28_01860 d15dc184c53b53cf4e6e0daab2e9e60b 68 Pfam PF13619 KTSC domain 7 56 2.5E-6 T 10-10-2018 IPR025309 KTSC domain AMQ28_08645 b38e871258742d5b0c7bfb0c91d6e893 146 Pfam PF05258 Protein of unknown function (DUF721) 23 94 7.8E-6 T 10-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 AMQ28_00500 a07a3ba606d7043086afb33ed993a447 289 Pfam PF13737 Transposase DDE domain 2 109 2.9E-41 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_00005 abf13b3dfed744ff6908dd9356b10c5e 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 94 6.8E-22 T 10-10-2018 IPR011846 Cyd operon protein YbgE AMQ28_02270 e7c84faf46411f8d2935878eeb26b3a1 121 Pfam PF04241 Protein of unknown function (DUF423) 16 102 6.9E-25 T 10-10-2018 IPR006696 Protein of unknown function DUF423 AMQ28_03245 8cacb2d438cdedbdae966b7cf19147bd 303 SUPERFAMILY SSF103481 192 289 6.28E-11 T 10-10-2018 AMQ28_03245 8cacb2d438cdedbdae966b7cf19147bd 303 Pfam PF00892 EamA-like transporter family 8 137 1.5E-11 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_03245 8cacb2d438cdedbdae966b7cf19147bd 303 Pfam PF00892 EamA-like transporter family 149 285 1.1E-14 T 10-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMQ28_03245 8cacb2d438cdedbdae966b7cf19147bd 303 SUPERFAMILY SSF103481 40 142 4.32E-14 T 10-10-2018 AMQ28_03860 4a88ad10388ef9806de1d636a7510344 825 Pfam PF02687 FtsX-like permease family 728 815 1.9E-9 T 10-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMQ28_12195 2207332e7c066bad375ea6378df13d47 237 Gene3D G3DSA:3.30.420.10 69 234 2.4E-17 T 10-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMQ28_12195 2207332e7c066bad375ea6378df13d47 237 Pfam PF00665 Integrase core domain 74 185 4.2E-24 T 10-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMQ28_12195 2207332e7c066bad375ea6378df13d47 237 SUPERFAMILY SSF53098 72 231 2.15E-48 T 10-10-2018 IPR012337 Ribonuclease H-like superfamily AMQ28_12195 2207332e7c066bad375ea6378df13d47 237 Pfam PF13276 HTH-like domain 1 50 8.6E-12 T 10-10-2018 IPR025948 HTH-like domain AMQ28_02810 f29c9b67ecd18437bb85a4296be38242 234 Gene3D G3DSA:3.30.110.170 34 226 9.4E-18 T 10-10-2018 AMQ28_02810 f29c9b67ecd18437bb85a4296be38242 234 Pfam PF04402 Protein of unknown function (DUF541) 32 227 4.8E-24 T 10-10-2018 IPR007497 Protein of unknown function DUF541 AMQ28_02810 f29c9b67ecd18437bb85a4296be38242 234 Gene3D G3DSA:3.30.70.2970 44 146 9.4E-18 T 10-10-2018 AMQ28_03390 bf2a2268c1659af86871e7cc71d4d77c 311 Pfam PF14415 Domain of unknown function (DUF4424) 18 305 7.9E-76 T 10-10-2018 IPR025538 Domain of unknown function DUF4424 AMQ28_03390 bf2a2268c1659af86871e7cc71d4d77c 311 Gene3D G3DSA:2.60.40.3680 20 131 9.3E-6 T 10-10-2018 AMQ28_12720 84a0e9aab2bc96fdef556f8282447f31 156 Pfam PF11220 Protein of unknown function (DUF3015) 20 155 2.9E-41 T 10-10-2018 IPR021383 Protein of unknown function DUF3015 AMQ28_01035 2b8d610975aae962bc97111f56dbf392 250 SUPERFAMILY SSF52540 2 198 1.96E-8 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_09800 7162b209ad4d3ebe2650e7ac3d6a3a4b 413 Pfam PF04932 O-Antigen ligase 199 338 4.9E-12 T 10-10-2018 IPR007016 O-antigen ligase-related AMQ28_08665 3c3427e16ef555fd49e9c38fd2b75bc6 191 Pfam PF01169 Uncharacterized protein family UPF0016 6 80 7.7E-19 T 10-10-2018 IPR001727 Gdt1 family AMQ28_08665 3c3427e16ef555fd49e9c38fd2b75bc6 191 Pfam PF01169 Uncharacterized protein family UPF0016 107 181 3.6E-22 T 10-10-2018 IPR001727 Gdt1 family AMQ28_07480 d695bf24a96904b9f4b84084a54ed80e 292 Hamap MF_01384 Urease accessory protein UreD [ureD]. 15 276 26.695 T 10-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMQ28_07480 d695bf24a96904b9f4b84084a54ed80e 292 Pfam PF01774 UreD urease accessory protein 60 264 9.9E-44 T 10-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMQ28_05615 b05cd897b6063e054da78fc7540917b4 260 Pfam PF05742 Transport and Golgi organisation 2 1 233 1.4E-54 T 10-10-2018 IPR008551 Transport and Golgi organisation protein 2 AMQ28_08815 f4e9f5efbf397e6add91e79f660310c4 113 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 15 108 1.0E-33 T 10-10-2018 IPR009707 Membrane protein GlpM/YdgC AMQ28_08815 f4e9f5efbf397e6add91e79f660310c4 113 Pfam PF06942 GlpM protein 6 111 1.7E-44 T 10-10-2018 IPR009707 Membrane protein GlpM/YdgC AMQ28_02375 a0ad74dd079b0fe7a04c6cbfb32d52f3 258 Pfam PF01435 Peptidase family M48 79 246 3.5E-35 T 10-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMQ28_02350 9ff27fd48ee8b1f136abddef35019999 427 Pfam PF06097 Bacterial protein of unknown function (DUF945) 27 422 5.4E-29 T 10-10-2018 IPR010352 Protein of unknown function DUF945 AMQ28_09605 fae403791075262ff2e0f232bc4a0960 266 Pfam PF10670 Domain of unknown function (DUF4198) 16 240 2.8E-17 T 10-10-2018 IPR019613 Protein of unknown function DUF4198 AMQ28_04525 a3c9697cbb45e0e900150777dfe116e5 173 Gene3D G3DSA:1.20.120.1200 1 163 3.1E-44 T 10-10-2018 AMQ28_04525 a3c9697cbb45e0e900150777dfe116e5 173 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 1.4E-31 T 10-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMQ28_13480 81d74996ac359a0f6d836beba8644ba6 102 SUPERFAMILY SSF54909 3 96 1.18E-31 T 10-10-2018 IPR011008 Dimeric alpha-beta barrel AMQ28_13480 81d74996ac359a0f6d836beba8644ba6 102 Pfam PF08803 Putative mono-oxygenase ydhR 4 98 8.7E-42 T 10-10-2018 IPR014910 Putative monooxygenase YdhR AMQ28_13480 81d74996ac359a0f6d836beba8644ba6 102 Gene3D G3DSA:3.30.70.100 1 102 9.7E-42 T 10-10-2018 AMQ28_05385 272ba35ea9d3d007e18f96412cbc5d23 263 Pfam PF14335 Domain of unknown function (DUF4391) 18 256 4.7E-70 T 10-10-2018 IPR025503 Protein of unknown function DUF4391 AMQ28_11555 bb5acbdaa9af64ec1d8d9f9999199f25 132 Pfam PF04355 SmpA / OmlA family 30 106 1.5E-23 T 10-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMQ28_11555 bb5acbdaa9af64ec1d8d9f9999199f25 132 Gene3D G3DSA:3.30.1450.10 29 117 1.1E-23 T 10-10-2018 IPR037873 BamE-like AMQ28_11555 bb5acbdaa9af64ec1d8d9f9999199f25 132 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 117 29.791 T 10-10-2018 IPR026592 Outer membrane protein assembly factor BamE AMQ28_08810 8528625226344e15c8f2c0259decf0f2 117 Pfam PF06993 Protein of unknown function (DUF1304) 9 114 3.3E-42 T 10-10-2018 IPR009732 Protein of unknown function DUF1304 AMQ28_00435 50fd91fa91ef7658e215f94b0f5bfda1 197 SUPERFAMILY SSF52141 11 192 1.23E-17 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_00435 50fd91fa91ef7658e215f94b0f5bfda1 197 Gene3D G3DSA:3.40.470.10 7 196 2.1E-18 T 10-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMQ28_13835 4aafd4a817500c2c02b739b7906a11e4 274 Pfam PF01148 Cytidylyltransferase family 3 265 5.2E-62 T 10-10-2018 AMQ28_13835 4aafd4a817500c2c02b739b7906a11e4 274 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 225 251 - T 10-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AMQ28_07560 32ab2de1246e8df65832d8fb5a2e4bbe 726 SUPERFAMILY SSF56349 523 681 1.06E-5 T 10-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMQ28_03175 2fb7243aeaee7639612224742c4863ed 134 Pfam PF11304 Protein of unknown function (DUF3106) 37 89 1.1E-6 T 10-10-2018 IPR021455 Protein of unknown function DUF3106 AMQ28_09455 0573df53e1c250cc868367ef0186b267 310 Pfam PF13737 Transposase DDE domain 22 130 9.2E-43 T 10-10-2018 IPR025668 Transposase DDE domain AMQ28_00665 b02c03188d7f528ab8fb9587eee7e553 469 Pfam PF02667 Short chain fatty acid transporter 8 454 8.8E-90 T 10-10-2018 IPR006160 Short chain fatty acid transporter AtoE AMQ28_13920 b376e0ff91c576123def3dcb8667e4c2 170 TIGRFAM TIGR01935 NOT-MenG: RraA family 8 162 2.8E-60 T 10-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AMQ28_13920 b376e0ff91c576123def3dcb8667e4c2 170 Gene3D G3DSA:3.50.30.40 4 169 1.1E-62 T 10-10-2018 AMQ28_13920 b376e0ff91c576123def3dcb8667e4c2 170 Pfam PF03737 Aldolase/RraA 8 162 1.3E-45 T 10-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMQ28_13920 b376e0ff91c576123def3dcb8667e4c2 170 SUPERFAMILY SSF89562 26 168 2.62E-45 T 10-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMQ28_07755 8da782732161d26a7e94ef33f658a6c3 329 Pfam PF04230 Polysaccharide pyruvyl transferase 99 256 1.3E-15 T 10-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMQ28_00530 683300692e15ef9e9f0369dd7b411c56 178 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 178 1.1E-52 T 10-10-2018 IPR018636 Protein of unknown function DUF2058 AMQ28_04125 b4be99c6c311dad8f46e3ce1fc56cfc0 288 Pfam PF08907 Domain of unknown function (DUF1853) 23 256 8.8E-41 T 10-10-2018 IPR015003 Protein of unknown function DUF1853 AMQ28_11040 b69883dbb519b35eaf1bd4883e1709e7 481 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 2 448 3.3E-116 T 10-10-2018 IPR003846 Uncharacterised protein family UPF0061 AMQ28_09970 9cd82b29d16b09707e616e5777d13fa6 380 Pfam PF01594 AI-2E family transporter 16 346 2.3E-46 T 10-10-2018 IPR002549 Transmembrane protein TqsA-like AMQ28_01890 008bc9d9417839d169641e93cb1d5d48 403 Pfam PF04143 Sulphur transport 53 380 8.2E-81 T 10-10-2018 IPR007272 Sulphur transport domain AMQ28_04960 2c51b980ec48a1a0277db7c0557bb11f 269 Pfam PF01925 Sulfite exporter TauE/SafE 9 259 1.6E-47 T 10-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMQ28_12145 452a78244812a41ceb6f4b5853594e03 183 Gene3D G3DSA:3.40.50.360 2 183 8.3E-51 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_12145 452a78244812a41ceb6f4b5853594e03 183 ProSitePatterns PS00201 Flavodoxin signature. 10 26 - T 10-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMQ28_12145 452a78244812a41ceb6f4b5853594e03 183 SUPERFAMILY SSF52218 6 178 2.49E-46 T 10-10-2018 IPR029039 Flavoprotein-like superfamily AMQ28_12145 452a78244812a41ceb6f4b5853594e03 183 Pfam PF03358 NADPH-dependent FMN reductase 50 122 1.5E-11 T 10-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMQ28_13580 032486d829d4197fcbba08dd3f313ba2 83 Gene3D G3DSA:3.10.20.30 1 83 2.8E-7 T 10-10-2018 IPR012675 Beta-grasp domain superfamily AMQ28_13580 032486d829d4197fcbba08dd3f313ba2 83 Pfam PF02597 ThiS family 23 83 1.9E-6 T 10-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMQ28_13580 032486d829d4197fcbba08dd3f313ba2 83 SUPERFAMILY SSF54285 6 83 4.3E-8 T 10-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMQ28_02770 3cffe60a231b824a04b212ef6b160a29 320 Pfam PF08496 Peptidase family S49 N-terminal 10 115 8.3E-31 T 10-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 AMQ28_02770 3cffe60a231b824a04b212ef6b160a29 320 Pfam PF01343 Peptidase family S49 119 264 1.7E-40 T 10-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMQ28_02770 3cffe60a231b824a04b212ef6b160a29 320 Gene3D G3DSA:3.40.1750.20 159 223 1.9E-38 T 10-10-2018 AMQ28_02770 3cffe60a231b824a04b212ef6b160a29 320 SUPERFAMILY SSF52096 54 256 5.36E-24 T 10-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMQ28_02770 3cffe60a231b824a04b212ef6b160a29 320 Gene3D G3DSA:3.90.226.10 88 258 1.9E-38 T 10-10-2018 AMQ28_00290 6f27129ab75e19c5ae90618fa04a2141 406 Pfam PF00487 Fatty acid desaturase 133 341 7.4E-24 T 10-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMQ28_05355 455a620e4842f4cd557fdb26aeefa192 273 Gene3D G3DSA:3.30.565.40 22 158 4.2E-9 T 10-10-2018 AMQ28_13080 8015180c9fed4144e905650fccb78d85 151 Pfam PF06892 Phage regulatory protein CII (CP76) 20 142 5.8E-8 T 10-10-2018 IPR009679 Bacteriophage 186, CII AMQ28_07615 ec24b2e6f3f68ee3144db909bb98f4eb 131 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 43 91 4.8E-18 T 10-10-2018 IPR027805 Transposase, Helix-turn-helix domain AMQ28_07510 56c625e2afd3e4ffd4e072da324469ae 138 Pfam PF04143 Sulphur transport 35 131 7.3E-7 T 10-10-2018 IPR007272 Sulphur transport domain AMQ28_06455 cb6fe3c92c4edf42a9c82b43e66afc54 88 Gene3D G3DSA:1.20.58.660 13 86 2.7E-24 T 10-10-2018 AMQ28_06455 cb6fe3c92c4edf42a9c82b43e66afc54 88 Pfam PF04325 Protein of unknown function (DUF465) 31 78 6.0E-13 T 10-10-2018 IPR007420 Protein of unknown function DUF465 AMQ28_08355 06b9e97a6badea9b0d121acdcfc2be06 381 Pfam PF00487 Fatty acid desaturase 74 341 3.9E-29 T 10-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMQ28_00095 0b3daf7863f9527c460244400da3d11d 283 Gene3D G3DSA:3.40.50.300 6 213 7.1E-27 T 10-10-2018 AMQ28_00095 0b3daf7863f9527c460244400da3d11d 283 SUPERFAMILY SSF52540 16 256 8.37E-36 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_00095 0b3daf7863f9527c460244400da3d11d 283 SMART SM00382 30 188 1.3E-8 T 10-10-2018 IPR003593 AAA+ ATPase domain AMQ28_00095 0b3daf7863f9527c460244400da3d11d 283 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 34 181 1.0E-13 T 10-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMQ28_05030 2dd2ab8264b86f8238ff1e79c2c13df8 316 Pfam PF05275 Copper resistance protein B precursor (CopB) 118 316 4.6E-49 T 10-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 AMQ28_13150 5c3c480d189b0b6177a281ee01ff056b 486 Pfam PF06074 Protein of unknown function (DUF935) 58 480 9.5E-51 T 10-10-2018 IPR009279 Protein of unknown function DUF935 AMQ28_00915 86b414e80bf3e0aae3e453d7936900df 232 Pfam PF08856 Protein of unknown function (DUF1826) 26 230 7.5E-6 T 10-10-2018 IPR014955 Protein of unknown function DUF1826 AMQ28_08135 91df1520f6eb24e467ac82e2b7df710b 85 Pfam PF04226 Transglycosylase associated protein 34 80 1.0E-13 T 10-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMQ28_14255 bc9371a4578b89d1a15d1c821551ccdc 131 Hamap MF_00599 Cell division protein FtsB [ftsB]. 11 99 26.757 T 10-10-2018 IPR023081 Cell division protein FtsB AMQ28_14255 bc9371a4578b89d1a15d1c821551ccdc 131 Pfam PF04977 Septum formation initiator 20 96 4.8E-24 T 10-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AMQ28_03930 a2feb07a8246801b74c7d304e4c49d5a 165 Pfam PF10698 Protein of unknown function (DUF2505) 14 152 1.2E-10 T 10-10-2018 IPR019639 Protein of unknown function DUF2505 AMQ28_11420 1232b7ae78a598762b90b5079cf5312b 477 Pfam PF12787 EcsC protein family 65 319 7.0E-25 T 10-10-2018 IPR024787 EcsC protein AMQ28_13020 b229704b531bd119bddb0a00861e3751 229 SUPERFAMILY SSF52540 4 132 5.73E-6 T 10-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMQ28_13180 758d66b0b4c8276c19331d7087d7bd1e 145 Pfam PF07030 Protein of unknown function (DUF1320) 2 104 6.0E-30 T 10-10-2018 IPR009752 Bacteriophage Mu, Gp36 AMQ28_04825 73c2caf682625294ece9fcd676bf62b7 264 Pfam PF02616 Segregation and condensation protein ScpA 53 156 6.7E-14 T 10-10-2018 IPR003768 Segregation and condensation protein A AMQ28_11650 4508cd10b45b018760fa0174143c0201 171 Pfam PF02417 Chromate transporter 5 167 2.1E-33 T 10-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMQ28_04805 fb164de39a15802b4996c91902a7e2f8 185 Pfam PF02620 Uncharacterized ACR, COG1399 64 181 9.0E-18 T 10-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AMQ28_11255 e3114d7d98b70a227cc458e2d1ab006d 149 Gene3D G3DSA:2.40.128.520 21 149 7.7E-19 T 10-10-2018 AMQ28_11255 e3114d7d98b70a227cc458e2d1ab006d 149 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 147 2.3E-27 T 10-10-2018 IPR019223 Domain of unknown function DUF2147 AMQ28_12050 a4e73a8252f657ad95534634d6461549 205 Pfam PF09335 SNARE associated Golgi protein 32 161 4.8E-23 T 10-10-2018 IPR032816 SNARE associated Golgi protein AMQ28_06340 5719be739e444d5a01c72afb68286505 136 Gene3D G3DSA:2.170.150.70 8 121 1.1E-17 T 10-10-2018 AMQ28_06340 5719be739e444d5a01c72afb68286505 136 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 117 2.2E-20 T 10-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMQ28_06340 5719be739e444d5a01c72afb68286505 136 SUPERFAMILY SSF51316 5 136 1.36E-44 T 10-10-2018 IPR011057 Mss4-like superfamily AMQ28_08540 7e7ee67124ddcc3fd595fc0940dfdde5 255 Pfam PF13557 Putative MetA-pathway of phenol degradation 27 255 1.5E-16 T 10-10-2018 IPR025737 MetA-pathway of phenol degradation, putative AMQ28_00825 f9aed20b50fbd805e418654bbb1be0f4 196 Pfam PF14328 Domain of unknown function (DUF4385) 23 181 2.6E-64 T 10-10-2018 IPR025494 Protein of unknown function DUF4385 AMQ28_02085 e21b5aa6e187c9e28a63f2e6b4b9a232 127 Pfam PF06127 Protein of unknown function (DUF962) 22 114 9.5E-30 T 10-10-2018 IPR009305 Protein of unknown function DUF962 AMQ28_05840 4317e21c20c4350f4d0f597950c6894b 120 Pfam PF13511 Domain of unknown function (DUF4124) 12 60 4.1E-9 T 10-10-2018 IPR025392 Domain of unknown function DUF4124 AMQ28_00100 e64bd804b9b106580455874c8d4df50d 395 Pfam PF05762 VWA domain containing CoxE-like protein 191 277 1.3E-8 T 10-10-2018 IPR008912 Uncharacterised protein family CoxE-like AMQ28_09150 d482373d1806b6f761f1c794187b9782 203 Pfam PF04116 Fatty acid hydroxylase superfamily 5 154 1.5E-7 T 10-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AMQ28_06675 46ab9f18bf3ce15fab932fa880c9a1c2 68 Pfam PF07869 Protein of unknown function (DUF1656) 3 57 1.9E-12 T 10-10-2018 IPR012451 Protein of unknown function DUF1656 AMQ28_05240 e5ca0b88611990729d06061e4cbd4557 189 Pfam PF02325 YGGT family 11 79 7.6E-5 T 10-10-2018 IPR003425 CCB3/YggT GO:0016020 AMQ28_05240 e5ca0b88611990729d06061e4cbd4557 189 Pfam PF02325 YGGT family 108 177 4.5E-16 T 10-10-2018 IPR003425 CCB3/YggT GO:0016020 AMQ28_12800 a6fac384148e69dea303690c034962af 382 Pfam PF07786 Protein of unknown function (DUF1624) 7 218 6.5E-16 T 10-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 AMQ28_03580 a3d1bf96626f327932e20ffb54134bf0 136 Gene3D G3DSA:3.30.1050.10 10 129 4.7E-6 T 10-10-2018 IPR036527 SCP2 sterol-binding domain superfamily AMQ28_03240 8a74acbf1a0fc68501df650c8fe69392 189 Pfam PF07238 PilZ domain 110 180 2.1E-5 T 10-10-2018 IPR009875 PilZ domain GO:0035438