locus-tag class description CDG55_00050 PF00239 Resolvase, N terminal domain CDG55_00050 PF02796 Helix-turn-helix domain of resolvase CDG55_00055 PF01051 Initiator Replication protein CDG55_00070 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CDG55_00105 PF00893 Small Multidrug Resistance protein CDG55_00115 PF01051 Initiator Replication protein CDG55_00145 PF03432 Relaxase/Mobilisation nuclease domain CDG55_00185 PF02661 Fic/DOC family CDG55_00215 PF13087 AAA domain CDG55_00215 PF13195 Protein of unknown function (DUF4011) CDG55_00215 PF13086 AAA domain CDG55_00215 PF13086 AAA domain CDG55_00215 PF13087 AAA domain CDG55_00215 PF13195 Protein of unknown function (DUF4011) CDG55_00295 PF13356 Arm DNA-binding domain CDG55_00295 PF00589 Phage integrase family CDG55_00320 PF02522 Aminoglycoside 3-N-acetyltransferase CDG55_00370 PF00905 Penicillin binding protein transpeptidase domain CDG55_00385 PF01381 Helix-turn-helix CDG55_00390 PF05973 Phage derived protein Gp49-like (DUF891) CDG55_00395 PF13936 Helix-turn-helix domain CDG55_00395 PF00665 Integrase core domain CDG55_00415 PF00118 TCP-1/cpn60 chaperonin family CDG55_00420 PF00166 Chaperonin 10 Kd subunit CDG55_00425 PF03091 CutA1 divalent ion tolerance protein CDG55_00430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDG55_00435 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDG55_00445 PF00753 Metallo-beta-lactamase superfamily CDG55_00450 PF00665 Integrase core domain CDG55_00450 PF13936 Helix-turn-helix domain CDG55_00480 PF13610 DDE domain CDG55_00495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG55_00495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG55_00495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG55_00495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG55_00500 PF00809 Pterin binding enzyme CDG55_00515 PF13610 DDE domain CDG55_00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_00525 PF03466 LysR substrate binding domain CDG55_00530 PF13610 DDE domain CDG55_00575 PF02195 ParB-like nuclease domain CDG55_00575 PF17762 HTH domain found in ParB protein CDG55_00580 PF13614 AAA domain CDG55_00590 PF02384 N-6 DNA Methylase CDG55_00605 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDG55_00605 PF11867 Domain of unknown function (DUF3387) CDG55_00605 PF18766 SWI2/SNF2 ATPase CDG55_00625 PF02661 Fic/DOC family CDG55_00655 PF11799 impB/mucB/samB family C-terminal domain CDG55_00655 PF13438 Domain of unknown function (DUF4113) CDG55_00655 PF00817 impB/mucB/samB family CDG55_00660 PF00717 Peptidase S24-like CDG55_00660 PF01726 LexA DNA binding domain CDG55_00675 PF13340 Putative transposase of IS4/5 family (DUF4096) CDG55_00680 PF05199 GMC oxidoreductase CDG55_00685 PF00171 Aldehyde dehydrogenase family CDG55_00690 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG55_00690 PF12833 Helix-turn-helix domain CDG55_00700 PF13340 Putative transposase of IS4/5 family (DUF4096) CDG55_00710 PF00589 Phage integrase family CDG55_00710 PF13356 Arm DNA-binding domain CDG55_00740 PF13610 DDE domain CDG55_00745 PF03601 Conserved hypothetical protein 698 CDG55_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_00750 PF03466 LysR substrate binding domain CDG55_00805 PF01545 Cation efflux family CDG55_00810 PF13411 MerR HTH family regulatory protein CDG55_00840 PF13635 Domain of unknown function (DUF4143) CDG55_00840 PF13173 AAA domain CDG55_00915 PF00239 Resolvase, N terminal domain CDG55_00915 PF02796 Helix-turn-helix domain of resolvase CDG55_00935 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG55_00945 PF00376 MerR family regulatory protein CDG55_00945 PF09278 MerR, DNA binding CDG55_00950 PF00403 Heavy-metal-associated domain CDG55_00955 PF01022 Bacterial regulatory protein, arsR family CDG55_00965 PF01545 Cation efflux family CDG55_00985 PF01636 Phosphotransferase enzyme family CDG55_01030 PF12833 Helix-turn-helix domain CDG55_01040 PF00905 Penicillin binding protein transpeptidase domain CDG55_01085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CDG55_01085 PF01348 Type II intron maturase CDG55_01110 PF13610 DDE domain CDG55_01115 PF09278 MerR, DNA binding CDG55_01115 PF00376 MerR family regulatory protein CDG55_01120 PF02411 MerT mercuric transport protein CDG55_01125 PF00403 Heavy-metal-associated domain CDG55_01130 PF03203 MerC mercury resistance protein CDG55_01135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG55_01135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_01135 PF00403 Heavy-metal-associated domain CDG55_01140 PF13411 MerR HTH family regulatory protein CDG55_01145 PF05052 MerE protein CDG55_01155 PF11809 Domain of unknown function (DUF3330) CDG55_01155 PF00563 EAL domain CDG55_01170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDG55_01175 PF00308 Bacterial dnaA protein CDG55_01175 PF08299 Bacterial dnaA protein helix-turn-helix CDG55_01175 PF11638 DnaA N-terminal domain CDG55_01180 PF00712 DNA polymerase III beta subunit, N-terminal domain CDG55_01180 PF02767 DNA polymerase III beta subunit, central domain CDG55_01180 PF02768 DNA polymerase III beta subunit, C-terminal domain CDG55_01185 PF02463 RecF/RecN/SMC N terminal domain CDG55_01190 PF00204 DNA gyrase B CDG55_01190 PF18053 DNA gyrase B subunit insert domain CDG55_01190 PF00986 DNA gyrase B subunit, carboxyl terminus CDG55_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_01190 PF01751 Toprim domain CDG55_01195 PF09335 SNARE associated Golgi protein CDG55_01200 PF00005 ABC transporter CDG55_01200 PF12848 ABC transporter CDG55_01230 PF01521 Iron-sulphur cluster biosynthesis CDG55_01235 PF03702 Anhydro-N-acetylmuramic acid kinase CDG55_01240 PF00579 tRNA synthetases class I (W and Y) CDG55_01275 PF13737 Transposase DDE domain CDG55_01295 PF00171 Aldehyde dehydrogenase family CDG55_01300 PF00209 Sodium:neurotransmitter symporter family CDG55_01310 PF01189 16S rRNA methyltransferase RsmB/F CDG55_01310 PF01029 NusB family CDG55_01315 PF02911 Formyl transferase, C-terminal domain CDG55_01315 PF00551 Formyl transferase CDG55_01320 PF00920 Dehydratase family CDG55_01330 PF00860 Permease family CDG55_01335 PF00311 Phosphoenolpyruvate carboxylase CDG55_01350 PF00873 AcrB/AcrD/AcrF family CDG55_01360 PF00226 DnaJ domain CDG55_01360 PF00684 DnaJ central domain CDG55_01360 PF01556 DnaJ C terminal domain CDG55_01365 PF01113 Dihydrodipicolinate reductase, N-terminus CDG55_01365 PF05173 Dihydrodipicolinate reductase, C-terminus CDG55_01375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_01375 PF03466 LysR substrate binding domain CDG55_01385 PF08240 Alcohol dehydrogenase GroES-like domain CDG55_01385 PF00107 Zinc-binding dehydrogenase CDG55_01390 PF03352 Methyladenine glycosylase CDG55_01405 PF00633 Helix-hairpin-helix motif CDG55_01405 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG55_01405 PF10576 Iron-sulfur binding domain of endonuclease III CDG55_01405 PF14815 NUDIX domain CDG55_01415 PF07043 Protein of unknown function (DUF1328) CDG55_01420 PF03692 Putative zinc- or iron-chelating domain CDG55_01430 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_01430 PF16193 AAA C-terminal domain CDG55_01430 PF12002 MgsA AAA+ ATPase C terminal CDG55_01450 PF01259 SAICAR synthetase CDG55_01460 PF00701 Dihydrodipicolinate synthetase family CDG55_01465 PF00857 Isochorismatase family CDG55_01470 PF01037 Lrp/AsnC ligand binding domain CDG55_01480 PF01380 SIS domain CDG55_01485 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_01485 PF14602 Hexapeptide repeat of succinyl-transferase CDG55_01485 PF12804 MobA-like NTP transferase domain CDG55_01490 PF04608 Phosphatidylglycerophosphatase A CDG55_01495 PF02769 AIR synthase related protein, C-terminal domain CDG55_01495 PF00586 AIR synthase related protein, N-terminal domain CDG55_01500 PF01029 NusB family CDG55_01505 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDG55_01510 PF00925 GTP cyclohydrolase II CDG55_01510 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG55_01535 PF02580 D-Tyr-tRNA(Tyr) deacylase CDG55_01540 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDG55_01540 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDG55_01545 PF00581 Rhodanese-like domain CDG55_01550 PF02666 Phosphatidylserine decarboxylase CDG55_01575 PF00989 PAS fold CDG55_01575 PF11808 Phosphate regulon sensor protein PhoR CDG55_01575 PF00512 His Kinase A (phospho-acceptor) domain CDG55_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_01580 PF00486 Transcriptional regulatory protein, C terminal CDG55_01580 PF00072 Response regulator receiver domain CDG55_01590 PF00106 short chain dehydrogenase CDG55_01595 PF01554 MatE CDG55_01600 PF00155 Aminotransferase class I and II CDG55_01610 PF04286 Protein of unknown function (DUF445) CDG55_01625 PF04262 Glutamate-cysteine ligase CDG55_01630 PF02600 Disulfide bond formation protein DsbB CDG55_01645 PF05728 Uncharacterised protein family (UPF0227) CDG55_01650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_01650 PF00204 DNA gyrase B CDG55_01650 PF00986 DNA gyrase B subunit, carboxyl terminus CDG55_01650 PF01751 Toprim domain CDG55_01660 PF02653 Branched-chain amino acid transport system / permease component CDG55_01670 PF00005 ABC transporter CDG55_01670 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDG55_01675 PF00005 ABC transporter CDG55_01705 PF11412 Disulphide bond corrector protein DsbC CDG55_01705 PF02683 Cytochrome C biogenesis protein transmembrane region CDG55_01715 PF17151 Periplasmic sensor domain CDG55_01715 PF00990 Diguanylate cyclase, GGDEF domain CDG55_01720 PF07859 alpha/beta hydrolase fold CDG55_01730 PF03960 ArsC family CDG55_01735 PF03372 Endonuclease/Exonuclease/phosphatase family CDG55_01740 PF00156 Phosphoribosyl transferase domain CDG55_01750 PF13391 HNH endonuclease CDG55_01755 PF00145 C-5 cytosine-specific DNA methylase CDG55_01765 PF01047 MarR family CDG55_01770 PF00255 Glutathione peroxidase CDG55_01775 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDG55_01775 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDG55_01780 PF04101 Glycosyltransferase family 28 C-terminal domain CDG55_01780 PF03033 Glycosyltransferase family 28 N-terminal domain CDG55_01785 PF08245 Mur ligase middle domain CDG55_01785 PF01225 Mur ligase family, catalytic domain CDG55_01785 PF02875 Mur ligase family, glutamate ligase domain CDG55_01790 PF07478 D-ala D-ala ligase C-terminus CDG55_01790 PF01820 D-ala D-ala ligase N-terminus CDG55_01795 PF08478 POTRA domain, FtsQ-type CDG55_01795 PF03799 Cell division protein FtsQ CDG55_01800 PF02491 SHS2 domain inserted in FTSA CDG55_01805 PF12327 FtsZ family, C-terminal domain CDG55_01805 PF00091 Tubulin/FtsZ family, GTPase domain CDG55_01810 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDG55_01825 PF17831 Pyruvate dehydrogenase E1 component middle domain CDG55_01825 PF00456 Transketolase, thiamine diphosphate binding domain CDG55_01830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG55_01830 PF02817 e3 binding domain CDG55_01830 PF00364 Biotin-requiring enzyme CDG55_01845 PF01169 Uncharacterized protein family UPF0016 CDG55_01850 PF00258 Flavodoxin CDG55_01850 PF01613 Flavin reductase like domain CDG55_01855 PF03692 Putative zinc- or iron-chelating domain CDG55_01860 PF00478 IMP dehydrogenase / GMP reductase domain CDG55_01860 PF00571 CBS domain CDG55_01865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG55_01865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG55_01865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG55_01865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG55_01870 PF01243 Pyridoxamine 5'-phosphate oxidase CDG55_01870 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDG55_01875 PF17768 RecJ OB domain CDG55_01875 PF01368 DHH family CDG55_01875 PF02272 DHHA1 domain CDG55_01895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG55_01905 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDG55_01910 PF04452 RNA methyltransferase CDG55_01915 PF00924 Mechanosensitive ion channel CDG55_01925 PF13193 AMP-binding enzyme C-terminal domain CDG55_01925 PF00501 AMP-binding enzyme CDG55_01925 PF16177 Acetyl-coenzyme A synthetase N-terminus CDG55_01930 PF00857 Isochorismatase family CDG55_01935 PF01037 Lrp/AsnC ligand binding domain CDG55_01940 PF00296 Luciferase-like monooxygenase CDG55_01945 PF03358 NADPH-dependent FMN reductase CDG55_01950 PF00072 Response regulator receiver domain CDG55_01950 PF00196 Bacterial regulatory proteins, luxR family CDG55_01970 PF17760 UvrA interaction domain CDG55_01970 PF17755 UvrA DNA-binding domain CDG55_01985 PF02581 Thiamine monophosphate synthase CDG55_01985 PF03070 TENA/THI-4/PQQC family CDG55_01985 PF08543 Phosphomethylpyrimidine kinase CDG55_01995 PF07690 Major Facilitator Superfamily CDG55_02000 PF00436 Single-strand binding protein family CDG55_02005 PF02678 Pirin CDG55_02005 PF05726 Pirin C-terminal cupin domain CDG55_02010 PF01593 Flavin containing amine oxidoreductase CDG55_02035 PF13784 Fic/DOC family N-terminal CDG55_02035 PF02661 Fic/DOC family CDG55_02115 PF01648 4'-phosphopantetheinyl transferase superfamily CDG55_02180 PF00589 Phage integrase family CDG55_02180 PF14659 Phage integrase, N-terminal SAM-like domain CDG55_02180 PF13356 Arm DNA-binding domain CDG55_02190 PF02705 K+ potassium transporter CDG55_02215 PF00977 Histidine biosynthesis protein CDG55_02220 PF01636 Phosphotransferase enzyme family CDG55_02235 PF03992 Antibiotic biosynthesis monooxygenase CDG55_02250 PF00977 Histidine biosynthesis protein CDG55_02260 PF00117 Glutamine amidotransferase class-I CDG55_02265 PF00475 Imidazoleglycerol-phosphate dehydratase CDG55_02290 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDG55_02290 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDG55_02295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_02295 PF00672 HAMP domain CDG55_02295 PF00512 His Kinase A (phospho-acceptor) domain CDG55_02300 PF00486 Transcriptional regulatory protein, C terminal CDG55_02300 PF00072 Response regulator receiver domain CDG55_02305 PF00575 S1 RNA binding domain CDG55_02305 PF16921 Tex protein YqgF-like domain CDG55_02305 PF09371 Tex-like protein N-terminal domain CDG55_02305 PF17674 HHH domain CDG55_02325 PF00106 short chain dehydrogenase CDG55_02330 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG55_02335 PF12848 ABC transporter CDG55_02335 PF00005 ABC transporter CDG55_02350 PF00529 HlyD membrane-fusion protein of T1SS CDG55_02350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG55_02355 PF00873 AcrB/AcrD/AcrF family CDG55_02360 PF01545 Cation efflux family CDG55_02390 PF00324 Amino acid permease CDG55_02405 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG55_02420 PF01795 MraW methylase family CDG55_02430 PF03717 Penicillin-binding Protein dimerisation domain CDG55_02430 PF00905 Penicillin binding protein transpeptidase domain CDG55_02435 PF02875 Mur ligase family, glutamate ligase domain CDG55_02435 PF01225 Mur ligase family, catalytic domain CDG55_02435 PF08245 Mur ligase middle domain CDG55_02440 PF08245 Mur ligase middle domain CDG55_02440 PF02875 Mur ligase family, glutamate ligase domain CDG55_02440 PF01225 Mur ligase family, catalytic domain CDG55_02445 PF00953 Glycosyl transferase family 4 CDG55_02450 PF13847 Methyltransferase domain CDG55_02455 PF17092 Penicillin-binding protein OB-like domain CDG55_02455 PF00905 Penicillin binding protein transpeptidase domain CDG55_02455 PF00912 Transglycosylase CDG55_02480 PF00263 Bacterial type II and III secretion system protein CDG55_02480 PF03958 Bacterial type II/III secretion system short domain CDG55_02480 PF07660 Secretin and TonB N terminus short domain CDG55_02480 PF11741 AMIN domain CDG55_02485 PF01202 Shikimate kinase CDG55_02490 PF01761 3-dehydroquinate synthase CDG55_02505 PF00310 Glutamine amidotransferases class-II CDG55_02505 PF01493 GXGXG motif CDG55_02505 PF04898 Glutamate synthase central domain CDG55_02505 PF01645 Conserved region in glutamate synthase CDG55_02510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDG55_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_02520 PF04011 LemA family CDG55_02525 PF04536 TPM domain CDG55_02535 PF07963 Prokaryotic N-terminal methylation motif CDG55_02535 PF00114 Pilin (bacterial filament) CDG55_02545 PF00535 Glycosyl transferase family 2 CDG55_02550 PF00005 ABC transporter CDG55_02550 PF00664 ABC transporter transmembrane region CDG55_02555 PF16363 GDP-mannose 4,6 dehydratase CDG55_02560 PF00483 Nucleotidyl transferase CDG55_02565 PF05523 WxcM-like, C-terminal CDG55_02585 PF13193 AMP-binding enzyme C-terminal domain CDG55_02585 PF00501 AMP-binding enzyme CDG55_02600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG55_02610 PF00535 Glycosyl transferase family 2 CDG55_02620 PF03275 UDP-galactopyranose mutase CDG55_02630 PF00534 Glycosyl transferases group 1 CDG55_02640 PF00114 Pilin (bacterial filament) CDG55_02640 PF07963 Prokaryotic N-terminal methylation motif CDG55_02650 PF15864 Protein glycosylation ligase CDG55_02650 PF04932 O-Antigen ligase CDG55_02650 PF11846 Virulence factor membrane-bound polymerase, C-terminal CDG55_02655 PF00210 Ferritin-like domain CDG55_02660 PF04324 BFD-like [2Fe-2S] binding domain CDG55_02665 PF01042 Endoribonuclease L-PSP CDG55_02670 PF02824 TGS domain CDG55_02670 PF13291 ACT domain CDG55_02670 PF04607 Region found in RelA / SpoT proteins CDG55_02675 PF01192 RNA polymerase Rpb6 CDG55_02680 PF00625 Guanylate kinase CDG55_02685 PF02401 LytB protein CDG55_02710 PF05567 Neisseria PilC beta-propeller domain CDG55_02725 PF00886 Ribosomal protein S16 CDG55_02730 PF01782 RimM N-terminal domain CDG55_02730 PF05239 PRC-barrel domain CDG55_02735 PF01746 tRNA (Guanine-1)-methyltransferase CDG55_02740 PF01245 Ribosomal protein L19 CDG55_02745 PF00561 alpha/beta hydrolase fold CDG55_02750 PF03280 Proteobacterial lipase chaperone protein CDG55_02755 PF09157 Pseudouridine synthase II TruB, C-terminal CDG55_02755 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDG55_02755 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDG55_02760 PF01925 Sulfite exporter TauE/SafE CDG55_02770 PF00892 EamA-like transporter family CDG55_02775 PF00892 EamA-like transporter family CDG55_02780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG55_02780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG55_02790 PF02913 FAD linked oxidases, C-terminal domain CDG55_02790 PF01565 FAD binding domain CDG55_02805 PF03992 Antibiotic biosynthesis monooxygenase CDG55_02810 PF02525 Flavodoxin-like fold CDG55_02825 PF07690 Major Facilitator Superfamily CDG55_02830 PF00080 Copper/zinc superoxide dismutase (SODC) CDG55_02835 PF01594 AI-2E family transporter CDG55_02845 PF13614 AAA domain CDG55_02855 PF01209 ubiE/COQ5 methyltransferase family CDG55_02870 PF08241 Methyltransferase domain CDG55_02900 PF05746 DALR anticodon binding domain CDG55_02900 PF02092 Glycyl-tRNA synthetase beta subunit CDG55_02910 PF02091 Glycyl-tRNA synthetase alpha subunit CDG55_02930 PF00571 CBS domain CDG55_02935 PF04024 PspC domain CDG55_02945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_02945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_02945 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG55_02945 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_02955 PF08501 Shikimate dehydrogenase substrate binding domain CDG55_02955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDG55_02955 PF01488 Shikimate / quinate 5-dehydrogenase CDG55_02965 PF04055 Radical SAM superfamily CDG55_02965 PF06969 HemN C-terminal domain CDG55_02970 PF00925 GTP cyclohydrolase II CDG55_02975 PF02780 Transketolase, C-terminal domain CDG55_02975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDG55_02975 PF02779 Transketolase, pyrimidine binding domain CDG55_02980 PF00459 Inositol monophosphatase family CDG55_02985 PF03880 DbpA RNA binding domain CDG55_02985 PF00271 Helicase conserved C-terminal domain CDG55_02985 PF12343 Cold shock protein DEAD box A CDG55_02985 PF00270 DEAD/DEAH box helicase CDG55_02995 PF00005 ABC transporter CDG55_03000 PF02405 Permease MlaE CDG55_03005 PF02470 MlaD protein CDG55_03010 PF05494 MlaC protein CDG55_03020 PF01544 CorA-like Mg2+ transporter protein CDG55_03030 PF00156 Phosphoribosyl transferase domain CDG55_03035 PF00270 DEAD/DEAH box helicase CDG55_03035 PF00271 Helicase conserved C-terminal domain CDG55_03035 PF17191 RecG wedge domain CDG55_03055 PF01553 Acyltransferase CDG55_03065 PF00375 Sodium:dicarboxylate symporter family CDG55_03075 PF01926 50S ribosome-binding GTPase CDG55_03080 PF02082 Transcriptional regulator CDG55_03085 PF00042 Globin CDG55_03085 PF00175 Oxidoreductase NAD-binding domain CDG55_03085 PF00970 Oxidoreductase FAD-binding domain CDG55_03090 PF05872 Bacterial protein of unknown function (DUF853) CDG55_03095 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG55_03100 PF00117 Glutamine amidotransferase class-I CDG55_03105 PF00338 Ribosomal protein S10p/S20e CDG55_03110 PF00297 Ribosomal protein L3 CDG55_03115 PF00573 Ribosomal protein L4/L1 family CDG55_03120 PF00276 Ribosomal protein L23 CDG55_03125 PF00181 Ribosomal Proteins L2, RNA binding domain CDG55_03125 PF03947 Ribosomal Proteins L2, C-terminal domain CDG55_03130 PF00203 Ribosomal protein S19 CDG55_03135 PF00237 Ribosomal protein L22p/L17e CDG55_03140 PF07650 KH domain CDG55_03140 PF00189 Ribosomal protein S3, C-terminal domain CDG55_03145 PF00252 Ribosomal protein L16p/L10e CDG55_03150 PF00831 Ribosomal L29 protein CDG55_03155 PF00366 Ribosomal protein S17 CDG55_03160 PF00238 Ribosomal protein L14p/L23e CDG55_03165 PF00467 KOW motif CDG55_03165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDG55_03170 PF00281 Ribosomal protein L5 CDG55_03170 PF00673 ribosomal L5P family C-terminus CDG55_03175 PF00253 Ribosomal protein S14p/S29e CDG55_03180 PF00410 Ribosomal protein S8 CDG55_03185 PF00347 Ribosomal protein L6 CDG55_03190 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDG55_03195 PF00333 Ribosomal protein S5, N-terminal domain CDG55_03195 PF03719 Ribosomal protein S5, C-terminal domain CDG55_03200 PF00327 Ribosomal protein L30p/L7e CDG55_03205 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDG55_03210 PF00344 SecY translocase CDG55_03215 PF00444 Ribosomal protein L36 CDG55_03220 PF00416 Ribosomal protein S13/S18 CDG55_03225 PF00411 Ribosomal protein S11 CDG55_03230 PF01479 S4 domain CDG55_03230 PF00163 Ribosomal protein S4/S9 N-terminal domain CDG55_03235 PF01000 RNA polymerase Rpb3/RpoA insert domain CDG55_03235 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDG55_03235 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDG55_03240 PF01196 Ribosomal protein L17 CDG55_03250 PF00743 Flavin-binding monooxygenase-like CDG55_03260 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_03260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_03260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_03265 PF03937 Flavinator of succinate dehydrogenase CDG55_03305 PF01432 Peptidase family M3 CDG55_03310 PF17876 Cold shock domain CDG55_03310 PF08461 Ribonuclease R winged-helix domain CDG55_03310 PF08206 Ribonuclease B OB domain CDG55_03310 PF00773 RNB domain CDG55_03310 PF00575 S1 RNA binding domain CDG55_03345 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG55_03350 PF03631 Virulence factor BrkB CDG55_03355 PF03358 NADPH-dependent FMN reductase CDG55_03360 PF01790 Prolipoprotein diacylglyceryl transferase CDG55_03375 PF00902 Sec-independent protein translocase protein (TatC) CDG55_03380 PF02416 mttA/Hcf106 family CDG55_03385 PF02416 mttA/Hcf106 family CDG55_03390 PF01725 Ham1 family CDG55_03405 PF07021 Methionine biosynthesis protein MetW CDG55_03405 PF00561 alpha/beta hydrolase fold CDG55_03410 PF00561 alpha/beta hydrolase fold CDG55_03415 PF08502 LeuA allosteric (dimerisation) domain CDG55_03415 PF00682 HMGL-like CDG55_03420 PF18331 PKHD-type hydroxylase C-terminal domain CDG55_03420 PF13640 2OG-Fe(II) oxygenase superfamily CDG55_03425 PF00593 TonB dependent receptor CDG55_03425 PF07715 TonB-dependent Receptor Plug Domain CDG55_03430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_03430 PF05697 Bacterial trigger factor protein (TF) CDG55_03430 PF05698 Bacterial trigger factor protein (TF) C-terminus CDG55_03435 PF00574 Clp protease CDG55_03440 PF10431 C-terminal, D2-small domain, of ClpB protein CDG55_03440 PF07724 AAA domain (Cdc48 subfamily) CDG55_03440 PF06689 ClpX C4-type zinc finger CDG55_03455 PF05681 Fumarate hydratase (Fumerase) CDG55_03455 PF05683 Fumarase C-terminus CDG55_03460 PF01515 Phosphate acetyl/butaryl transferase CDG55_03460 PF07085 DRTGG domain CDG55_03465 PF00871 Acetokinase family CDG55_03470 PF00171 Aldehyde dehydrogenase family CDG55_03475 PF12697 Alpha/beta hydrolase family CDG55_03485 PF00933 Glycosyl hydrolase family 3 N terminal domain CDG55_03490 PF17804 Tail specific protease N-terminal domain CDG55_03490 PF03572 Peptidase family S41 CDG55_03490 PF00595 PDZ domain CDG55_03490 PF11818 C-terminal domain of tail specific protease (DUF3340) CDG55_03515 PF16360 GTP-binding GTPase Middle Region CDG55_03515 PF01926 50S ribosome-binding GTPase CDG55_03515 PF13167 GTP-binding GTPase N-terminal CDG55_03525 PF13091 PLD-like domain CDG55_03530 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDG55_03530 PF00149 Calcineurin-like phosphoesterase CDG55_03535 PF01389 OmpA-like transmembrane domain CDG55_03535 PF00691 OmpA family CDG55_03540 PF00990 Diguanylate cyclase, GGDEF domain CDG55_03540 PF17152 Periplasmic sensor domain CDG55_03580 PF04273 Putative phosphatase (DUF442) CDG55_03580 PF00753 Metallo-beta-lactamase superfamily CDG55_03585 PF00561 alpha/beta hydrolase fold CDG55_03590 PF00085 Thioredoxin CDG55_03595 PF03061 Thioesterase superfamily CDG55_03605 PF04461 Protein of unknown function (DUF520) CDG55_03615 PF01266 FAD dependent oxidoreductase CDG55_03615 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDG55_03630 PF04279 Intracellular septation protein A CDG55_03640 PF01062 Bestrophin, RFP-TM, chloride channel CDG55_03645 PF04002 RadC-like JAB domain CDG55_03650 PF02441 Flavoprotein CDG55_03650 PF04127 DNA / pantothenate metabolism flavoprotein CDG55_03660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG55_03660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG55_03670 PF02556 Preprotein translocase subunit SecB CDG55_03675 PF00462 Glutaredoxin CDG55_03685 PF03193 RsgA GTPase CDG55_03690 PF00929 Exonuclease CDG55_03695 PF07690 Major Facilitator Superfamily CDG55_03715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDG55_03715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDG55_03720 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDG55_03725 PF02233 NAD(P) transhydrogenase beta subunit CDG55_03730 PF00106 short chain dehydrogenase CDG55_03735 PF00909 Ammonium Transporter Family CDG55_03735 PF00672 HAMP domain CDG55_03750 PF01261 Xylose isomerase-like TIM barrel CDG55_03755 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG55_03755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG55_03760 PF00378 Enoyl-CoA hydratase/isomerase CDG55_03765 PF00672 HAMP domain CDG55_03765 PF00512 His Kinase A (phospho-acceptor) domain CDG55_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_03765 PF01627 Hpt domain CDG55_03765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDG55_03765 PF00072 Response regulator receiver domain CDG55_03770 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_03780 PF05958 tRNA (Uracil-5-)-methyltransferase CDG55_03785 PF13291 ACT domain CDG55_03785 PF04607 Region found in RelA / SpoT proteins CDG55_03785 PF02824 TGS domain CDG55_03815 PF03819 MazG nucleotide pyrophosphohydrolase domain CDG55_03825 PF01743 Poly A polymerase head domain CDG55_03825 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG55_03825 PF12626 Polymerase A arginine-rich C-terminus CDG55_03830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDG55_03835 PF02548 Ketopantoate hydroxymethyltransferase CDG55_03840 PF02569 Pantoate-beta-alanine ligase CDG55_03845 PF03668 P-loop ATPase protein family CDG55_03850 PF00381 PTS HPr component phosphorylation site CDG55_03855 PF04751 Protein of unknown function (DUF615) CDG55_03860 PF13193 AMP-binding enzyme C-terminal domain CDG55_03860 PF00501 AMP-binding enzyme CDG55_03865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG55_03865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG55_03865 PF03129 Anticodon binding domain CDG55_03865 PF02824 TGS domain CDG55_03870 PF00707 Translation initiation factor IF-3, C-terminal domain CDG55_03870 PF05198 Translation initiation factor IF-3, N-terminal domain CDG55_03875 PF00011 Hsp20/alpha crystallin family CDG55_03880 PF02798 Glutathione S-transferase, N-terminal domain CDG55_03880 PF00043 Glutathione S-transferase, C-terminal domain CDG55_03885 PF09335 SNARE associated Golgi protein CDG55_03895 PF01632 Ribosomal protein L35 CDG55_03900 PF00453 Ribosomal protein L20 CDG55_03915 PF01409 tRNA synthetases class II core domain (F) CDG55_03915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDG55_03920 PF03483 B3/4 domain CDG55_03920 PF03484 tRNA synthetase B5 domain CDG55_03920 PF03147 Ferredoxin-fold anticodon binding domain CDG55_03920 PF01588 Putative tRNA binding domain CDG55_03920 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDG55_03925 PF00216 Bacterial DNA-binding protein CDG55_03935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG55_03935 PF07498 Rho termination factor, N-terminal domain CDG55_03935 PF07497 Rho termination factor, RNA-binding domain CDG55_03940 PF00085 Thioredoxin CDG55_03945 PF02541 Ppx/GppA phosphatase family CDG55_03950 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDG55_03955 PF01171 PP-loop family CDG55_03955 PF11734 TilS substrate C-terminal domain CDG55_03955 PF09179 TilS substrate binding domain CDG55_03960 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDG55_03960 PF03807 NADP oxidoreductase coenzyme F420-dependent CDG55_03965 PF02325 YGGT family CDG55_03970 PF01367 5'-3' exonuclease, C-terminal SAM fold CDG55_03970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDG55_03970 PF00476 DNA polymerase family A CDG55_03970 PF01612 3'-5' exonuclease CDG55_03990 PF00437 Type II/IV secretion system protein CDG55_03995 PF02566 OsmC-like protein CDG55_04000 PF01047 MarR family CDG55_04010 PF00795 Carbon-nitrogen hydrolase CDG55_04055 PF04552 Sigma-54, DNA binding domain CDG55_04055 PF04963 Sigma-54 factor, core binding domain CDG55_04055 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDG55_04060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDG55_04065 PF01722 BolA-like protein CDG55_04070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG55_04075 PF01634 ATP phosphoribosyltransferase CDG55_04085 PF00815 Histidinol dehydrogenase CDG55_04090 PF00155 Aminotransferase class I and II CDG55_04095 PF04715 Anthranilate synthase component I, N terminal region CDG55_04095 PF00425 chorismate binding enzyme CDG55_04140 PF00293 NUDIX domain CDG55_04145 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_04150 PF00814 Glycoprotease family CDG55_04155 PF02673 Bacitracin resistance protein BacA CDG55_04160 PF04445 Putative SAM-dependent methyltransferase CDG55_04170 PF00756 Putative esterase CDG55_04180 PF00834 Ribulose-phosphate 3 epimerase family CDG55_04190 PF07731 Multicopper oxidase CDG55_04190 PF07732 Multicopper oxidase CDG55_04190 PF00394 Multicopper oxidase CDG55_04210 PF00893 Small Multidrug Resistance protein CDG55_04215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG55_04215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG55_04220 PF01960 ArgJ family CDG55_04225 PF02445 Quinolinate synthetase A protein CDG55_04270 PF06039 Malate:quinone oxidoreductase (Mqo) CDG55_04275 PF00268 Ribonucleotide reductase, small chain CDG55_04290 PF03477 ATP cone domain CDG55_04290 PF00317 Ribonucleotide reductase, all-alpha domain CDG55_04290 PF02867 Ribonucleotide reductase, barrel domain CDG55_04300 PF00072 Response regulator receiver domain CDG55_04300 PF00486 Transcriptional regulatory protein, C terminal CDG55_04305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_04305 PF00672 HAMP domain CDG55_04305 PF00512 His Kinase A (phospho-acceptor) domain CDG55_04320 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDG55_04325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDG55_04330 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDG55_04330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDG55_04340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDG55_04340 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDG55_04340 PF10531 SLBB domain CDG55_04345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDG55_04345 PF00384 Molybdopterin oxidoreductase CDG55_04345 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDG55_04350 PF00146 NADH dehydrogenase CDG55_04355 PF12838 4Fe-4S dicluster domain CDG55_04360 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDG55_04365 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG55_04370 PF00361 Proton-conducting membrane transporter CDG55_04370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG55_04375 PF00361 Proton-conducting membrane transporter CDG55_04380 PF00361 Proton-conducting membrane transporter CDG55_04395 PF00313 'Cold-shock' DNA-binding domain CDG55_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_04400 PF03466 LysR substrate binding domain CDG55_04405 PF00970 Oxidoreductase FAD-binding domain CDG55_04405 PF00175 Oxidoreductase NAD-binding domain CDG55_04420 PF05552 Conserved TM helix CDG55_04440 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_04460 PF06100 MCRA family CDG55_04470 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDG55_04470 PF00753 Metallo-beta-lactamase superfamily CDG55_04480 PF09334 tRNA synthetases class I (M) CDG55_04480 PF01588 Putative tRNA binding domain CDG55_04490 PF13302 Acetyltransferase (GNAT) domain CDG55_04500 PF10609 NUBPL iron-transfer P-loop NTPase CDG55_04515 PF00692 dUTPase CDG55_04545 PF01207 Dihydrouridine synthase (Dus) CDG55_04560 PF00448 SRP54-type protein, GTPase domain CDG55_04560 PF02881 SRP54-type protein, helical bundle domain CDG55_04560 PF02978 Signal peptide binding domain CDG55_04565 PF03309 Type III pantothenate kinase CDG55_04575 PF01925 Sulfite exporter TauE/SafE CDG55_04595 PF02463 RecF/RecN/SMC N terminal domain CDG55_04595 PF06470 SMC proteins Flexible Hinge Domain CDG55_04605 PF00533 BRCA1 C Terminus (BRCT) domain CDG55_04605 PF01653 NAD-dependent DNA ligase adenylation domain CDG55_04605 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDG55_04605 PF12826 Helix-hairpin-helix motif CDG55_04605 PF03120 NAD-dependent DNA ligase OB-fold domain CDG55_04615 PF00210 Ferritin-like domain CDG55_04620 PF00578 AhpC/TSA family CDG55_04625 PF12697 Alpha/beta hydrolase family CDG55_04625 PF08241 Methyltransferase domain CDG55_04630 PF06968 Biotin and Thiamin Synthesis associated domain CDG55_04630 PF04055 Radical SAM superfamily CDG55_04630 PF00202 Aminotransferase class-III CDG55_04635 PF00155 Aminotransferase class I and II CDG55_04660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDG55_04665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDG55_04670 PF01432 Peptidase family M3 CDG55_04675 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_04680 PF12911 N-terminal TM domain of oligopeptide transport permease C CDG55_04680 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_04685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDG55_04685 PF00005 ABC transporter CDG55_04690 PF01479 S4 domain CDG55_04690 PF00849 RNA pseudouridylate synthase CDG55_04695 PF04079 Segregation and condensation complex subunit ScpB CDG55_04700 PF02616 Segregation and condensation protein ScpA CDG55_04710 PF01300 Telomere recombination CDG55_04715 PF04315 Elongation factor P hydroxylase CDG55_04720 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDG55_04725 PF01783 Ribosomal L32p protein family CDG55_04730 PF00698 Acyl transferase domain CDG55_04740 PF00550 Phosphopantetheine attachment site CDG55_04745 PF00550 Phosphopantetheine attachment site CDG55_04750 PF04972 BON domain CDG55_04750 PF01476 LysM domain CDG55_04755 PF08543 Phosphomethylpyrimidine kinase CDG55_04755 PF02581 Thiamine monophosphate synthase CDG55_04755 PF03070 TENA/THI-4/PQQC family CDG55_04760 PF13419 Haloacid dehalogenase-like hydrolase CDG55_04765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG55_04770 PF02261 Aspartate decarboxylase CDG55_04775 PF01195 Peptidyl-tRNA hydrolase CDG55_04780 PF01386 Ribosomal L25p family CDG55_04785 PF14572 Phosphoribosyl synthetase-associated domain CDG55_04785 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDG55_04810 PF00288 GHMP kinases N terminal domain CDG55_04810 PF08544 GHMP kinases C terminal CDG55_04815 PF03550 Outer membrane lipoprotein LolB CDG55_04825 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDG55_04825 PF01488 Shikimate / quinate 5-dehydrogenase CDG55_04825 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDG55_04830 PF08278 DNA primase DnaG DnaB-binding CDG55_04830 PF01807 CHC2 zinc finger CDG55_04830 PF10410 DnaB-helicase binding domain of primase CDG55_04830 PF08275 DNA primase catalytic core, N-terminal domain CDG55_04835 PF13525 Outer membrane lipoprotein CDG55_04840 PF01479 S4 domain CDG55_04840 PF00849 RNA pseudouridylate synthase CDG55_04850 PF03358 NADPH-dependent FMN reductase CDG55_04855 PF01668 SmpB protein CDG55_04955 PF00589 Phage integrase family CDG55_04955 PF13356 Arm DNA-binding domain CDG55_04960 PF01467 Cytidylyltransferase-like CDG55_04965 PF00037 4Fe-4S binding domain CDG55_04990 PF00795 Carbon-nitrogen hydrolase CDG55_04990 PF02540 NAD synthase CDG55_05010 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG55_05010 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG55_05015 PF12787 EcsC protein family CDG55_05020 PF00164 Ribosomal protein S12/S23 CDG55_05025 PF00177 Ribosomal protein S7p/S5e CDG55_05030 PF03764 Elongation factor G, domain IV CDG55_05030 PF00009 Elongation factor Tu GTP binding domain CDG55_05030 PF00679 Elongation factor G C-terminus CDG55_05030 PF14492 Elongation Factor G, domain II CDG55_05030 PF03144 Elongation factor Tu domain 2 CDG55_05035 PF03144 Elongation factor Tu domain 2 CDG55_05035 PF00009 Elongation factor Tu GTP binding domain CDG55_05035 PF03143 Elongation factor Tu C-terminal domain CDG55_05050 PF00583 Acetyltransferase (GNAT) family CDG55_05055 PF04376 Arginine-tRNA-protein transferase, N terminus CDG55_05055 PF04377 Arginine-tRNA-protein transferase, C terminus CDG55_05060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDG55_05065 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_05070 PF01580 FtsK/SpoIIIE family CDG55_05070 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDG55_05070 PF09397 Ftsk gamma domain CDG55_05070 PF17854 FtsK alpha domain CDG55_05075 PF01810 LysE type translocator CDG55_05085 PF03776 Septum formation topological specificity factor MinE CDG55_05090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDG55_05095 PF03775 Septum formation inhibitor MinC, C-terminal domain CDG55_05105 PF01553 Acyltransferase CDG55_05110 PF00691 OmpA family CDG55_05110 PF13488 Glycine zipper CDG55_05115 PF00580 UvrD/REP helicase N-terminal domain CDG55_05115 PF13361 UvrD-like helicase C-terminal domain CDG55_05120 PF00692 dUTPase CDG55_05125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG55_05125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG55_05125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG55_05125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG55_05130 PF00696 Amino acid kinase family CDG55_05140 PF13230 Glutamine amidotransferases class-II CDG55_05145 PF01814 Hemerythrin HHE cation binding domain CDG55_05155 PF03658 RnfH family Ubiquitin CDG55_05160 PF04355 SmpA / OmlA family CDG55_05165 PF01475 Ferric uptake regulator family CDG55_05170 PF00437 Type II/IV secretion system protein CDG55_05175 PF00437 Type II/IV secretion system protein CDG55_05180 PF01168 Alanine racemase, N-terminal domain CDG55_05190 PF12320 Type 5 capsule protein repressor C-terminal domain CDG55_05190 PF00149 Calcineurin-like phosphoesterase CDG55_05195 PF00378 Enoyl-CoA hydratase/isomerase CDG55_05210 PF01370 NAD dependent epimerase/dehydratase family CDG55_05210 PF08338 Domain of unknown function (DUF1731) CDG55_05215 PF01266 FAD dependent oxidoreductase CDG55_05220 PF00490 Delta-aminolevulinic acid dehydratase CDG55_05225 PF03061 Thioesterase superfamily CDG55_05230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG55_05230 PF00529 HlyD membrane-fusion protein of T1SS CDG55_05235 PF07690 Major Facilitator Superfamily CDG55_05280 PF00589 Phage integrase family CDG55_05280 PF13356 Arm DNA-binding domain CDG55_05300 PF03061 Thioesterase superfamily CDG55_05310 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDG55_05310 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDG55_05315 PF07152 YaeQ protein CDG55_05320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_05325 PF13737 Transposase DDE domain CDG55_05335 PF14883 Hypothetical glycosyl hydrolase family 13 CDG55_05335 PF01522 Polysaccharide deacetylase CDG55_05340 PF00535 Glycosyl transferase family 2 CDG55_05355 PF09423 PhoD-like phosphatase CDG55_05355 PF16655 PhoD-like phosphatase, N-terminal domain CDG55_05370 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDG55_05370 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDG55_05385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDG55_05385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDG55_05390 PF00455 DeoR C terminal sensor domain CDG55_05390 PF08220 DeoR-like helix-turn-helix domain CDG55_05395 PF01266 FAD dependent oxidoreductase CDG55_05395 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDG55_05410 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CDG55_05410 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CDG55_05415 PF00781 Diacylglycerol kinase catalytic domain CDG55_05425 PF00166 Chaperonin 10 Kd subunit CDG55_05430 PF00118 TCP-1/cpn60 chaperonin family CDG55_05445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG55_05445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG55_05445 PF11890 Domain of unknown function (DUF3410) CDG55_05450 PF00152 tRNA synthetases class II (D, K and N) CDG55_05460 PF03781 Sulfatase-modifying factor enzyme 1 CDG55_05465 PF00884 Sulfatase CDG55_05475 PF01106 NifU-like domain CDG55_05475 PF01521 Iron-sulphur cluster biosynthesis CDG55_05480 PF00593 TonB dependent receptor CDG55_05480 PF07715 TonB-dependent Receptor Plug Domain CDG55_05490 PF00561 alpha/beta hydrolase fold CDG55_05495 PF00484 Carbonic anhydrase CDG55_05500 PF13472 GDSL-like Lipase/Acylhydrolase family CDG55_05505 PF00005 ABC transporter CDG55_05515 PF01694 Rhomboid family CDG55_05520 PF00912 Transglycosylase CDG55_05525 PF02503 Polyphosphate kinase middle domain CDG55_05525 PF13090 Polyphosphate kinase C-terminal domain 2 CDG55_05525 PF17941 Polyphosphate kinase C-terminal domain 1 CDG55_05525 PF13089 Polyphosphate kinase N-terminal domain CDG55_05530 PF03060 Nitronate monooxygenase CDG55_05540 PF00875 DNA photolyase CDG55_05540 PF03441 FAD binding domain of DNA photolyase CDG55_05545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_05550 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_05555 PF00768 D-alanyl-D-alanine carboxypeptidase CDG55_05555 PF07943 Penicillin-binding protein 5, C-terminal domain CDG55_05565 PF03971 Monomeric isocitrate dehydrogenase CDG55_05575 PF00849 RNA pseudouridylate synthase CDG55_05580 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG55_05585 PF02567 Phenazine biosynthesis-like protein CDG55_05590 PF05193 Peptidase M16 inactive domain CDG55_05590 PF00675 Insulinase (Peptidase family M16) CDG55_05605 PF01928 CYTH domain CDG55_05615 PF13737 Transposase DDE domain CDG55_05625 PF00089 Trypsin CDG55_05630 PF02581 Thiamine monophosphate synthase CDG55_05635 PF00202 Aminotransferase class-III CDG55_05645 PF00849 RNA pseudouridylate synthase CDG55_05650 PF00176 SNF2 family N-terminal domain CDG55_05650 PF00271 Helicase conserved C-terminal domain CDG55_05650 PF18339 RapA N-terminal Tudor like domain 1 CDG55_05650 PF18337 RapA N-terminal Tudor like domain CDG55_05650 PF12137 RNA polymerase recycling family C-terminal CDG55_05655 PF00210 Ferritin-like domain CDG55_05665 PF00440 Bacterial regulatory proteins, tetR family CDG55_05670 PF00970 Oxidoreductase FAD-binding domain CDG55_05670 PF00175 Oxidoreductase NAD-binding domain CDG55_05670 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG55_05675 PF00487 Fatty acid desaturase CDG55_05685 PF00202 Aminotransferase class-III CDG55_05690 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDG55_05700 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_05705 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_05710 PF00005 ABC transporter CDG55_05715 PF01343 Peptidase family S49 CDG55_05715 PF08496 Peptidase family S49 N-terminal CDG55_05740 PF03717 Penicillin-binding Protein dimerisation domain CDG55_05740 PF00905 Penicillin binding protein transpeptidase domain CDG55_05755 PF05191 Adenylate kinase, active site lid CDG55_05770 PF07728 AAA domain (dynein-related subfamily) CDG55_05780 PF05762 VWA domain containing CoxE-like protein CDG55_05790 PF10576 Iron-sulfur binding domain of endonuclease III CDG55_05790 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG55_05790 PF00633 Helix-hairpin-helix motif CDG55_05795 PF04060 Putative Fe-S cluster CDG55_05800 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDG55_05800 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDG55_05810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDG55_05815 PF02590 Predicted SPOUT methyltransferase CDG55_05820 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDG55_05820 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG55_05820 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_05825 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDG55_05835 PF13411 MerR HTH family regulatory protein CDG55_05865 PF03695 Uncharacterised protein family (UPF0149) CDG55_05870 PF05195 Aminopeptidase P, N-terminal domain CDG55_05870 PF00557 Metallopeptidase family M24 CDG55_05875 PF01494 FAD binding domain CDG55_05880 PF01494 FAD binding domain CDG55_05890 PF13411 MerR HTH family regulatory protein CDG55_05900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG55_05910 PF02021 Uncharacterised protein family UPF0102 CDG55_05915 PF04972 BON domain CDG55_05925 PF00293 NUDIX domain CDG55_05925 PF09297 NADH pyrophosphatase zinc ribbon domain CDG55_05935 PF00929 Exonuclease CDG55_05940 PF01464 Transglycosylase SLT domain CDG55_05940 PF01476 LysM domain CDG55_05945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDG55_05950 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_05955 PF12911 N-terminal TM domain of oligopeptide transport permease C CDG55_05955 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_05960 PF00005 ABC transporter CDG55_05960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDG55_05965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG55_05965 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_05980 PF00929 Exonuclease CDG55_05985 PF01979 Amidohydrolase family CDG55_05990 PF00563 EAL domain CDG55_05990 PF00360 Phytochrome region CDG55_05990 PF00990 Diguanylate cyclase, GGDEF domain CDG55_05990 PF01590 GAF domain CDG55_06000 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDG55_06005 PF05675 Protein of unknown function (DUF817) CDG55_06045 PF00218 Indole-3-glycerol phosphate synthase CDG55_06050 PF00591 Glycosyl transferase family, a/b domain CDG55_06050 PF02885 Glycosyl transferase family, helical bundle domain CDG55_06060 PF00117 Glutamine amidotransferase class-I CDG55_06070 PF04345 Chorismate lyase CDG55_06075 PF01040 UbiA prenyltransferase family CDG55_06125 PF00005 ABC transporter CDG55_06140 PF04851 Type III restriction enzyme, res subunit CDG55_06140 PF12344 Ultra-violet resistance protein B CDG55_06140 PF17757 UvrB interaction domain CDG55_06140 PF00271 Helicase conserved C-terminal domain CDG55_06140 PF02151 UvrB/uvrC motif CDG55_06165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG55_06165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG55_06170 PF01018 GTP1/OBG CDG55_06170 PF01926 50S ribosome-binding GTPase CDG55_06175 PF01472 PUA domain CDG55_06175 PF00696 Amino acid kinase family CDG55_06185 PF07759 Protein of unknown function (DUF1615) CDG55_06190 PF01207 Dihydrouridine synthase (Dus) CDG55_06195 PF03466 LysR substrate binding domain CDG55_06195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_06200 PF00561 alpha/beta hydrolase fold CDG55_06205 PF18113 Rubredoxin binding C-terminal domain CDG55_06205 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_06210 PF00301 Rubredoxin CDG55_06220 PF01336 OB-fold nucleic acid binding domain CDG55_06220 PF00152 tRNA synthetases class II (D, K and N) CDG55_06230 PF01507 Phosphoadenosine phosphosulfate reductase family CDG55_06235 PF00009 Elongation factor Tu GTP binding domain CDG55_06245 PF00571 CBS domain CDG55_06245 PF03471 Transporter associated domain CDG55_06245 PF01595 Cyclin M transmembrane N-terminal domain CDG55_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_06250 PF03466 LysR substrate binding domain CDG55_06255 PF00463 Isocitrate lyase family CDG55_06260 PF17185 NlpE C-terminal OB domain CDG55_06260 PF04170 NlpE N-terminal domain CDG55_06270 PF01406 tRNA synthetases class I (C) catalytic domain CDG55_06270 PF09190 DALR domain CDG55_06280 PF00571 CBS domain CDG55_06280 PF01380 SIS domain CDG55_06295 PF03968 OstA-like protein CDG55_06300 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDG55_06300 PF00005 ABC transporter CDG55_06305 PF01205 Uncharacterized protein family UPF0029 CDG55_06310 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_06330 PF00037 4Fe-4S binding domain CDG55_06330 PF11953 Domain of unknown function (DUF3470) CDG55_06335 PF05188 MutS domain II CDG55_06335 PF00488 MutS domain V CDG55_06335 PF05190 MutS family domain IV CDG55_06335 PF05192 MutS domain III CDG55_06335 PF01624 MutS domain I CDG55_06395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG55_06395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG55_06400 PF01553 Acyltransferase CDG55_06405 PF01435 Peptidase family M48 CDG55_06420 PF09424 Yqey-like protein CDG55_06425 PF01165 Ribosomal protein S21 CDG55_06430 PF00814 Glycoprotease family CDG55_06455 PF03793 PASTA domain CDG55_06455 PF00069 Protein kinase domain CDG55_06495 PF08328 Adenylosuccinate lyase C-terminal CDG55_06495 PF00206 Lyase CDG55_06500 PF04356 Protein of unknown function (DUF489) CDG55_06510 PF00293 NUDIX domain CDG55_06515 PF10946 Protein of unknown function DUF2625 CDG55_06520 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_06525 PF00768 D-alanyl-D-alanine carboxypeptidase CDG55_06525 PF07943 Penicillin-binding protein 5, C-terminal domain CDG55_06540 PF01975 Survival protein SurE CDG55_06545 PF01551 Peptidase family M23 CDG55_06545 PF01476 LysM domain CDG55_06550 PF03466 LysR substrate binding domain CDG55_06550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_06555 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG55_06555 PF13654 AAA domain CDG55_06560 PF07690 Major Facilitator Superfamily CDG55_06565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDG55_06570 PF13593 SBF-like CPA transporter family (DUF4137) CDG55_06575 PF01197 Ribosomal protein L31 CDG55_06590 PF04055 Radical SAM superfamily CDG55_06595 PF01132 Elongation factor P (EF-P) OB domain CDG55_06595 PF08207 Elongation factor P (EF-P) KOW-like domain CDG55_06595 PF09285 Elongation factor P, C-terminal CDG55_06600 PF02554 Carbon starvation protein CstA CDG55_06600 PF13722 5TM C-terminal transporter carbon starvation CstA CDG55_06605 PF04328 Selenoprotein, putative CDG55_06610 PF07726 ATPase family associated with various cellular activities (AAA) CDG55_06610 PF17863 AAA lid domain CDG55_06620 PF01841 Transglutaminase-like superfamily CDG55_06620 PF11992 Domain of unknown function (DUF3488) CDG55_06620 PF13559 Domain of unknown function (DUF4129) CDG55_06645 PF17954 Quercetinase C-terminal cupin domain CDG55_06645 PF02678 Pirin CDG55_06650 PF00764 Arginosuccinate synthase CDG55_06655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG55_06655 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_06760 PF13356 Arm DNA-binding domain CDG55_06760 PF00589 Phage integrase family CDG55_06780 PF09317 Domain of unknown function (DUF1974) CDG55_06780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_06780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_06785 PF13185 GAF domain CDG55_06785 PF00158 Sigma-54 interaction domain CDG55_06785 PF02954 Bacterial regulatory protein, Fis family CDG55_06790 PF00753 Metallo-beta-lactamase superfamily CDG55_06795 PF04273 Putative phosphatase (DUF442) CDG55_06795 PF00753 Metallo-beta-lactamase superfamily CDG55_06800 PF01925 Sulfite exporter TauE/SafE CDG55_06830 PF13649 Methyltransferase domain CDG55_06835 PF00512 His Kinase A (phospho-acceptor) domain CDG55_06835 PF08521 Two-component sensor kinase N-terminal CDG55_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_06840 PF00072 Response regulator receiver domain CDG55_06840 PF00486 Transcriptional regulatory protein, C terminal CDG55_06860 PF00665 Integrase core domain CDG55_06860 PF13936 Helix-turn-helix domain CDG55_06870 PF02540 NAD synthase CDG55_06870 PF00958 GMP synthase C terminal domain CDG55_06870 PF00117 Glutamine amidotransferase class-I CDG55_06880 PF05970 PIF1-like helicase CDG55_06880 PF14493 Helix-turn-helix domain CDG55_06890 PF02110 Hydroxyethylthiazole kinase family CDG55_06925 PF01433 Peptidase family M1 domain CDG55_06925 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDG55_06925 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDG55_06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_06930 PF07730 Histidine kinase CDG55_06930 PF13492 GAF domain CDG55_06930 PF13185 GAF domain CDG55_06935 PF00072 Response regulator receiver domain CDG55_06935 PF00196 Bacterial regulatory proteins, luxR family CDG55_06940 PF05685 Putative restriction endonuclease CDG55_06955 PF06271 RDD family CDG55_06960 PF00999 Sodium/hydrogen exchanger family CDG55_06960 PF02254 TrkA-N domain CDG55_06965 PF03594 Benzoate membrane transport protein CDG55_06970 PF01810 LysE type translocator CDG55_06980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_06980 PF03466 LysR substrate binding domain CDG55_06990 PF17757 UvrB interaction domain CDG55_06990 PF03461 TRCF domain CDG55_06990 PF02559 CarD-like/TRCF domain CDG55_06990 PF00271 Helicase conserved C-terminal domain CDG55_06990 PF00270 DEAD/DEAH box helicase CDG55_07000 PF00211 Adenylate and Guanylate cyclase catalytic domain CDG55_07010 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG55_07015 PF00012 Hsp70 protein CDG55_07020 PF07743 HSCB C-terminal oligomerisation domain CDG55_07020 PF00226 DnaJ domain CDG55_07025 PF01521 Iron-sulphur cluster biosynthesis CDG55_07030 PF01592 NifU-like N terminal domain CDG55_07035 PF00266 Aminotransferase class-V CDG55_07040 PF02082 Transcriptional regulator CDG55_07055 PF00216 Bacterial DNA-binding protein CDG55_07075 PF02631 RecX family CDG55_07080 PF00154 recA bacterial DNA recombination protein CDG55_07085 PF01479 S4 domain CDG55_07090 PF13419 Haloacid dehalogenase-like hydrolase CDG55_07095 PF00459 Inositol monophosphatase family CDG55_07105 PF01649 Ribosomal protein S20 CDG55_07110 PF13460 NAD(P)H-binding CDG55_07115 PF03737 Aldolase/RraA CDG55_07130 PF00108 Thiolase, N-terminal domain CDG55_07130 PF02803 Thiolase, C-terminal domain CDG55_07160 PF01580 FtsK/SpoIIIE family CDG55_07160 PF09397 Ftsk gamma domain CDG55_07160 PF17854 FtsK alpha domain CDG55_07170 PF02545 Maf-like protein CDG55_07180 PF00162 Phosphoglycerate kinase CDG55_07200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDG55_07200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDG55_07225 PF01180 Dihydroorotate dehydrogenase CDG55_07230 PF02674 Colicin V production protein CDG55_07235 PF00156 Phosphoribosyl transferase domain CDG55_07245 PF02673 Bacitracin resistance protein BacA CDG55_07275 PF05816 Toxic anion resistance protein (TelA) CDG55_07290 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_07290 PF13192 Thioredoxin domain CDG55_07305 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_07310 PF00588 SpoU rRNA Methylase family CDG55_07315 PF01336 OB-fold nucleic acid binding domain CDG55_07315 PF02811 PHP domain CDG55_07315 PF14579 Helix-hairpin-helix motif CDG55_07315 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDG55_07315 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDG55_07345 PF04055 Radical SAM superfamily CDG55_07345 PF06968 Biotin and Thiamin Synthesis associated domain CDG55_07350 PF08331 Domain of unknown function (DUF1730) CDG55_07355 PF01256 Carbohydrate kinase CDG55_07355 PF03853 YjeF-related protein N-terminus CDG55_07360 PF02075 Crossover junction endodeoxyribonuclease RuvC CDG55_07375 PF00313 'Cold-shock' DNA-binding domain CDG55_07380 PF00313 'Cold-shock' DNA-binding domain CDG55_07385 PF00313 'Cold-shock' DNA-binding domain CDG55_07400 PF05360 yiaA/B two helix domain CDG55_07405 PF00472 RF-1 domain CDG55_07405 PF03462 PCRF domain CDG55_07410 PF17827 PrmC N-terminal domain CDG55_07410 PF13847 Methyltransferase domain CDG55_07420 PF00106 short chain dehydrogenase CDG55_07430 PF03746 LamB/YcsF family CDG55_07435 PF02626 Carboxyltransferase domain, subdomain A and B CDG55_07440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG55_07440 PF02785 Biotin carboxylase C-terminal domain CDG55_07440 PF00364 Biotin-requiring enzyme CDG55_07440 PF00289 Biotin carboxylase, N-terminal domain CDG55_07445 PF01435 Peptidase family M48 CDG55_07450 PF00027 Cyclic nucleotide-binding domain CDG55_07450 PF13545 Crp-like helix-turn-helix domain CDG55_07455 PF02566 OsmC-like protein CDG55_07465 PF17871 AAA lid domain CDG55_07465 PF02861 Clp amino terminal domain, pathogenicity island component CDG55_07465 PF10431 C-terminal, D2-small domain, of ClpB protein CDG55_07465 PF07724 AAA domain (Cdc48 subfamily) CDG55_07465 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_07475 PF02926 THUMP domain CDG55_07475 PF01170 Putative RNA methylase family UPF0020 CDG55_07475 PF10672 S-adenosylmethionine-dependent methyltransferase CDG55_07485 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG55_07485 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG55_07490 PF01979 Amidohydrolase family CDG55_07505 PF02390 Putative methyltransferase CDG55_07515 PF02798 Glutathione S-transferase, N-terminal domain CDG55_07515 PF00043 Glutathione S-transferase, C-terminal domain CDG55_07525 PF13192 Thioredoxin domain CDG55_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_07540 PF12833 Helix-turn-helix domain CDG55_07540 PF07883 Cupin domain CDG55_07545 PF00487 Fatty acid desaturase CDG55_07555 PF00578 AhpC/TSA family CDG55_07555 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG55_07560 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDG55_07560 PF11898 Domain of unknown function (DUF3418) CDG55_07560 PF04408 Helicase associated domain (HA2) CDG55_07560 PF00270 DEAD/DEAH box helicase CDG55_07560 PF00271 Helicase conserved C-terminal domain CDG55_07565 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDG55_07565 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDG55_07575 PF04055 Radical SAM superfamily CDG55_07580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG55_07580 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_07595 PF03330 Lytic transglycolase CDG55_07595 PF05036 Sporulation related domain CDG55_07600 PF13406 Transglycosylase SLT domain CDG55_07605 PF01098 Cell cycle protein CDG55_07615 PF14489 QueF-like protein CDG55_07615 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDG55_07620 PF01061 ABC-2 type transporter CDG55_07625 PF00005 ABC transporter CDG55_07650 PF00464 Serine hydroxymethyltransferase CDG55_07660 PF00037 4Fe-4S binding domain CDG55_07695 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDG55_07695 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDG55_07695 PF02772 S-adenosylmethionine synthetase, central domain CDG55_07700 PF02779 Transketolase, pyrimidine binding domain CDG55_07700 PF02780 Transketolase, C-terminal domain CDG55_07700 PF00456 Transketolase, thiamine diphosphate binding domain CDG55_07725 PF04264 YceI-like domain CDG55_07740 PF09992 Phosphodiester glycosidase CDG55_07750 PF05958 tRNA (Uracil-5-)-methyltransferase CDG55_07755 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDG55_07755 PF14850 DNA-binding domain of Proline dehydrogenase CDG55_07755 PF00171 Aldehyde dehydrogenase family CDG55_07755 PF01619 Proline dehydrogenase CDG55_07760 PF01037 Lrp/AsnC ligand binding domain CDG55_07765 PF00474 Sodium:solute symporter family CDG55_07770 PF00206 Lyase CDG55_07770 PF10415 Fumarase C C-terminus CDG55_07775 PF01597 Glycine cleavage H-protein CDG55_07780 PF12833 Helix-turn-helix domain CDG55_07780 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG55_07790 PF00664 ABC transporter transmembrane region CDG55_07790 PF00005 ABC transporter CDG55_07810 PF00175 Oxidoreductase NAD-binding domain CDG55_07810 PF00970 Oxidoreductase FAD-binding domain CDG55_07815 PF01980 tRNA-methyltransferase O CDG55_07815 PF18389 TrmO C-terminal domain CDG55_07825 PF00437 Type II/IV secretion system protein CDG55_07835 PF00293 NUDIX domain CDG55_07845 PF00912 Transglycosylase CDG55_07845 PF14814 Bifunctional transglycosylase second domain CDG55_07845 PF00905 Penicillin binding protein transpeptidase domain CDG55_07855 PF01513 ATP-NAD kinase CDG55_07860 PF07023 Protein of unknown function (DUF1315) CDG55_07865 PF02885 Glycosyl transferase family, helical bundle domain CDG55_07865 PF00591 Glycosyl transferase family, a/b domain CDG55_07870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_07870 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_07870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_07880 PF01817 Chorismate mutase type II CDG55_07880 PF00800 Prephenate dehydratase CDG55_07880 PF01842 ACT domain CDG55_07885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG55_07895 PF01546 Peptidase family M20/M25/M40 CDG55_07895 PF07687 Peptidase dimerisation domain CDG55_07920 PF03883 Peroxide stress protein YaaA CDG55_07950 PF03466 LysR substrate binding domain CDG55_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_07960 PF00924 Mechanosensitive ion channel CDG55_07965 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CDG55_07975 PF00375 Sodium:dicarboxylate symporter family CDG55_07980 PF05690 Thiazole biosynthesis protein ThiG CDG55_07990 PF04241 Protein of unknown function (DUF423) CDG55_07995 PF00140 Sigma-70 factor, region 1.2 CDG55_07995 PF04545 Sigma-70, region 4 CDG55_07995 PF04542 Sigma-70 region 2 CDG55_08005 PF00313 'Cold-shock' DNA-binding domain CDG55_08010 PF00271 Helicase conserved C-terminal domain CDG55_08010 PF00270 DEAD/DEAH box helicase CDG55_08015 PF01116 Fructose-bisphosphate aldolase class-II CDG55_08020 PF09312 SurA N-terminal domain CDG55_08020 PF00639 PPIC-type PPIASE domain CDG55_08025 PF03968 OstA-like protein CDG55_08025 PF04453 LPS transport system D CDG55_08030 PF01636 Phosphotransferase enzyme family CDG55_08035 PF00483 Nucleotidyl transferase CDG55_08040 PF02527 rRNA small subunit methyltransferase G CDG55_08045 PF13614 AAA domain CDG55_08050 PF02195 ParB-like nuclease domain CDG55_08050 PF17762 HTH domain found in ParB protein CDG55_08055 PF01618 MotA/TolQ/ExbB proton channel family CDG55_08065 PF00664 ABC transporter transmembrane region CDG55_08065 PF00005 ABC transporter CDG55_08070 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDG55_08075 PF02348 Cytidylyltransferase CDG55_08080 PF09115 DNA polymerase III, delta subunit, C terminal CDG55_08090 PF01026 TatD related DNase CDG55_08105 PF07963 Prokaryotic N-terminal methylation motif CDG55_08105 PF02501 Type II secretion system (T2SS), protein I CDG55_08110 PF11612 Type II secretion system (T2SS), protein J CDG55_08110 PF07963 Prokaryotic N-terminal methylation motif CDG55_08115 PF03934 Type II secretion system (T2SS), protein K CDG55_08125 PF03167 Uracil DNA glycosylase superfamily CDG55_08135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDG55_08145 PF02224 Cytidylate kinase CDG55_08150 PF00575 S1 RNA binding domain CDG55_08155 PF00216 Bacterial DNA-binding protein CDG55_08170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDG55_08175 PF03956 Lysine exporter LysO CDG55_08180 PF00743 Flavin-binding monooxygenase-like CDG55_08190 PF03969 AFG1-like ATPase CDG55_08195 PF01274 Malate synthase CDG55_08225 PF05525 Branched-chain amino acid transport protein CDG55_08230 PF00557 Metallopeptidase family M24 CDG55_08235 PF03466 LysR substrate binding domain CDG55_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_08240 PF04607 Region found in RelA / SpoT proteins CDG55_08240 PF13291 ACT domain CDG55_08240 PF02824 TGS domain CDG55_08250 PF00462 Glutaredoxin CDG55_08255 PF00202 Aminotransferase class-III CDG55_08260 PF00571 CBS domain CDG55_08260 PF01380 SIS domain CDG55_08285 PF02881 SRP54-type protein, helical bundle domain CDG55_08285 PF00448 SRP54-type protein, GTPase domain CDG55_08310 PF08173 Membrane bound YbgT-like protein CDG55_08315 PF02322 Cytochrome bd terminal oxidase subunit II CDG55_08320 PF01654 Cytochrome bd terminal oxidase subunit I CDG55_08340 PF00294 pfkB family carbohydrate kinase CDG55_08345 PF05193 Peptidase M16 inactive domain CDG55_08345 PF08367 Peptidase M16C associated CDG55_08345 PF00675 Insulinase (Peptidase family M16) CDG55_08350 PF02253 Phospholipase A1 CDG55_08385 PF02386 Cation transport protein CDG55_08390 PF02080 TrkA-C domain CDG55_08390 PF02254 TrkA-N domain CDG55_08395 PF00585 C-terminal regulatory domain of Threonine dehydratase CDG55_08395 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_08400 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDG55_08415 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG55_08415 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG55_08425 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDG55_08435 PF17871 AAA lid domain CDG55_08435 PF02861 Clp amino terminal domain, pathogenicity island component CDG55_08435 PF07724 AAA domain (Cdc48 subfamily) CDG55_08435 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_08435 PF10431 C-terminal, D2-small domain, of ClpB protein CDG55_08440 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDG55_08445 PF00793 DAHP synthetase I family CDG55_08450 PF12697 Alpha/beta hydrolase family CDG55_08460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG55_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_08485 PF00117 Glutamine amidotransferase class-I CDG55_08485 PF06418 CTP synthase N-terminus CDG55_08490 PF00793 DAHP synthetase I family CDG55_08495 PF00113 Enolase, C-terminal TIM barrel domain CDG55_08495 PF03952 Enolase, N-terminal domain CDG55_08500 PF04977 Septum formation initiator CDG55_08505 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDG55_08515 PF04143 Sulphur transport CDG55_08525 PF00753 Metallo-beta-lactamase superfamily CDG55_08545 PF01425 Amidase CDG55_08550 PF00364 Biotin-requiring enzyme CDG55_08550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG55_08550 PF02785 Biotin carboxylase C-terminal domain CDG55_08550 PF00289 Biotin carboxylase, N-terminal domain CDG55_08555 PF07729 FCD domain CDG55_08555 PF00392 Bacterial regulatory proteins, gntR family CDG55_08560 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDG55_08560 PF18381 YcaO cyclodehydratase C-terminal domain CDG55_08580 PF08267 Cobalamin-independent synthase, N-terminal domain CDG55_08580 PF01717 Cobalamin-independent synthase, Catalytic domain CDG55_08585 PF01613 Flavin reductase like domain CDG55_08590 PF01925 Sulfite exporter TauE/SafE CDG55_08625 PF00990 Diguanylate cyclase, GGDEF domain CDG55_08630 PF01264 Chorismate synthase CDG55_08635 PF05175 Methyltransferase small domain CDG55_08645 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_08645 PF17862 AAA+ lid domain CDG55_08645 PF01434 Peptidase family M41 CDG55_08655 PF05166 YcgL domain CDG55_08660 PF01612 3'-5' exonuclease CDG55_08660 PF00570 HRDC domain CDG55_08665 PF02132 RecR protein CDG55_08665 PF13662 Toprim domain CDG55_08670 PF02575 YbaB/EbfC DNA-binding family CDG55_08675 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG55_08685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG55_08685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG55_08695 PF01230 HIT domain CDG55_08720 PF02684 Lipid-A-disaccharide synthetase CDG55_08750 PF01925 Sulfite exporter TauE/SafE CDG55_08755 PF00793 DAHP synthetase I family CDG55_08765 PF07715 TonB-dependent Receptor Plug Domain CDG55_08765 PF00593 TonB dependent receptor CDG55_08775 PF02654 Cobalamin-5-phosphate synthase CDG55_08785 PF00300 Histidine phosphatase superfamily (branch 1) CDG55_08790 PF02277 Phosphoribosyltransferase CDG55_08795 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDG55_08805 PF13419 Haloacid dehalogenase-like hydrolase CDG55_08815 PF07715 TonB-dependent Receptor Plug Domain CDG55_08815 PF00593 TonB dependent receptor CDG55_08820 PF07690 Major Facilitator Superfamily CDG55_08835 PF04183 IucA / IucC family CDG55_08835 PF06276 Ferric iron reductase FhuF-like transporter CDG55_08840 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CDG55_08845 PF04183 IucA / IucC family CDG55_08845 PF06276 Ferric iron reductase FhuF-like transporter CDG55_08850 PF04073 Aminoacyl-tRNA editing domain CDG55_08860 PF03109 ABC1 family CDG55_08865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_08865 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_08865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_08870 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_08870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_08870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_08875 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_08875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG55_08880 PF00487 Fatty acid desaturase CDG55_08885 PF12852 Cupin CDG55_08885 PF12833 Helix-turn-helix domain CDG55_08890 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDG55_08890 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_08895 PF07977 FabA-like domain CDG55_08900 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDG55_08900 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_08910 PF01103 Surface antigen CDG55_08910 PF07244 Surface antigen variable number repeat CDG55_08930 PF13288 DXP reductoisomerase C-terminal domain CDG55_08930 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDG55_08930 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDG55_08940 PF01255 Putative undecaprenyl diphosphate synthase CDG55_08945 PF01765 Ribosome recycling factor CDG55_08950 PF00696 Amino acid kinase family CDG55_08955 PF00919 Uncharacterized protein family UPF0004 CDG55_08955 PF18693 TRAM domain CDG55_08955 PF04055 Radical SAM superfamily CDG55_08960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_08960 PF00512 His Kinase A (phospho-acceptor) domain CDG55_08960 PF00989 PAS fold CDG55_08965 PF02954 Bacterial regulatory protein, Fis family CDG55_08965 PF00158 Sigma-54 interaction domain CDG55_08965 PF00072 Response regulator receiver domain CDG55_08970 PF00440 Bacterial regulatory proteins, tetR family CDG55_08975 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG55_08975 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG55_08985 PF02542 YgbB family CDG55_08995 PF01266 FAD dependent oxidoreductase CDG55_09005 PF00206 Lyase CDG55_09005 PF10415 Fumarase C C-terminus CDG55_09010 PF16363 GDP-mannose 4,6 dehydratase CDG55_09015 PF02635 DsrE/DsrF-like family CDG55_09035 PF01638 HxlR-like helix-turn-helix CDG55_09040 PF03454 MoeA C-terminal region (domain IV) CDG55_09040 PF00994 Probable molybdopterin binding domain CDG55_09040 PF03453 MoeA N-terminal region (domain I and II) CDG55_09045 PF00994 Probable molybdopterin binding domain CDG55_09045 PF01967 MoaC family CDG55_09050 PF02391 MoaE protein CDG55_09060 PF04055 Radical SAM superfamily CDG55_09060 PF06463 Molybdenum Cofactor Synthesis C CDG55_09065 PF12804 MobA-like NTP transferase domain CDG55_09070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDG55_09070 PF00384 Molybdopterin oxidoreductase CDG55_09070 PF01568 Molydopterin dinucleotide binding domain CDG55_09070 PF04324 BFD-like [2Fe-2S] binding domain CDG55_09075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG55_09075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG55_09075 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_09075 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDG55_09075 PF04324 BFD-like [2Fe-2S] binding domain CDG55_09080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_09080 PF13806 Rieske-like [2Fe-2S] domain CDG55_09080 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDG55_09080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG55_09080 PF04324 BFD-like [2Fe-2S] binding domain CDG55_09080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG55_09085 PF07690 Major Facilitator Superfamily CDG55_09095 PF00005 ABC transporter CDG55_09100 PF01220 Dehydroquinase class II CDG55_09105 PF00364 Biotin-requiring enzyme CDG55_09110 PF02785 Biotin carboxylase C-terminal domain CDG55_09110 PF00289 Biotin carboxylase, N-terminal domain CDG55_09110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG55_09120 PF01425 Amidase CDG55_09125 PF12832 MFS_1 like family CDG55_09140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDG55_09140 PF01565 FAD binding domain CDG55_09145 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG55_09150 PF00465 Iron-containing alcohol dehydrogenase CDG55_09155 PF03061 Thioesterase superfamily CDG55_09160 PF12169 DNA polymerase III subunits gamma and tau domain III CDG55_09160 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDG55_09160 PF12170 DNA polymerase III tau subunit V interacting with alpha CDG55_09165 PF08007 Cupin superfamily protein CDG55_09180 PF07690 Major Facilitator Superfamily CDG55_09185 PF09997 Predicted membrane protein (DUF2238) CDG55_09190 PF00520 Ion transport protein CDG55_09190 PF00027 Cyclic nucleotide-binding domain CDG55_09210 PF06434 Aconitate hydratase 2 N-terminus CDG55_09210 PF00330 Aconitase family (aconitate hydratase) CDG55_09210 PF11791 Aconitate B N-terminal domain CDG55_09230 PF17243 POTRA domain TamA domain 1 CDG55_09230 PF07244 Surface antigen variable number repeat CDG55_09230 PF01103 Surface antigen CDG55_09235 PF07690 Major Facilitator Superfamily CDG55_09240 PF03232 Ubiquinone biosynthesis protein COQ7 CDG55_09255 PF02152 Dihydroneopterin aldolase CDG55_09260 PF03109 ABC1 family CDG55_09265 PF00899 ThiF family CDG55_09275 PF04151 Bacterial pre-peptidase C-terminal domain CDG55_09285 PF00107 Zinc-binding dehydrogenase CDG55_09285 PF16884 N-terminal domain of oxidoreductase CDG55_09290 PF16925 Tetracyclin repressor-like, C-terminal domain CDG55_09290 PF00440 Bacterial regulatory proteins, tetR family CDG55_09300 PF00465 Iron-containing alcohol dehydrogenase CDG55_09315 PF00756 Putative esterase CDG55_09320 PF00107 Zinc-binding dehydrogenase CDG55_09320 PF08240 Alcohol dehydrogenase GroES-like domain CDG55_09325 PF02583 Metal-sensitive transcriptional repressor CDG55_09330 PF00698 Acyl transferase domain CDG55_09330 PF16197 Ketoacyl-synthetase C-terminal extension CDG55_09330 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG55_09330 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG55_09330 PF08659 KR domain CDG55_09330 PF08240 Alcohol dehydrogenase GroES-like domain CDG55_09330 PF00550 Phosphopantetheine attachment site CDG55_09330 PF14765 Polyketide synthase dehydratase CDG55_09335 PF08240 Alcohol dehydrogenase GroES-like domain CDG55_09335 PF00107 Zinc-binding dehydrogenase CDG55_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_09340 PF03466 LysR substrate binding domain CDG55_09345 PF00106 short chain dehydrogenase CDG55_09350 PF00107 Zinc-binding dehydrogenase CDG55_09350 PF08240 Alcohol dehydrogenase GroES-like domain CDG55_09375 PF01709 Transcriptional regulator CDG55_09390 PF06071 Protein of unknown function (DUF933) CDG55_09390 PF01926 50S ribosome-binding GTPase CDG55_09395 PF17158 Membrane-associated sensor, integral membrane domain CDG55_09395 PF00990 Diguanylate cyclase, GGDEF domain CDG55_09410 PF00027 Cyclic nucleotide-binding domain CDG55_09410 PF13545 Crp-like helix-turn-helix domain CDG55_09430 PF02222 ATP-grasp domain CDG55_09435 PF08335 GlnD PII-uridylyltransferase CDG55_09435 PF01909 Nucleotidyltransferase domain CDG55_09435 PF01966 HD domain CDG55_09440 PF00155 Aminotransferase class I and II CDG55_09450 PF01037 Lrp/AsnC ligand binding domain CDG55_09455 PF13533 Biotin-lipoyl like CDG55_09460 PF00873 AcrB/AcrD/AcrF family CDG55_09465 PF00255 Glutathione peroxidase CDG55_09470 PF01641 SelR domain CDG55_09475 PF00155 Aminotransferase class I and II CDG55_09485 PF00665 Integrase core domain CDG55_09485 PF13936 Helix-turn-helix domain CDG55_09490 PF00691 OmpA family CDG55_09490 PF01389 OmpA-like transmembrane domain CDG55_09555 PF00155 Aminotransferase class I and II CDG55_09555 PF00392 Bacterial regulatory proteins, gntR family CDG55_09560 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG55_09560 PF12833 Helix-turn-helix domain CDG55_09570 PF00106 short chain dehydrogenase CDG55_09585 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDG55_09585 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG55_09590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG55_09595 PF00149 Calcineurin-like phosphoesterase CDG55_09610 PF17209 Hfq protein CDG55_09620 PF08676 MutL C terminal dimerisation domain CDG55_09620 PF01119 DNA mismatch repair protein, C-terminal domain CDG55_09625 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDG55_09635 PF00849 RNA pseudouridylate synthase CDG55_09635 PF01479 S4 domain CDG55_09645 PF00583 Acetyltransferase (GNAT) family CDG55_09650 PF01479 S4 domain CDG55_09650 PF00849 RNA pseudouridylate synthase CDG55_09660 PF00296 Luciferase-like monooxygenase CDG55_09665 PF03618 Kinase/pyrophosphorylase CDG55_09670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDG55_09670 PF02896 PEP-utilising enzyme, TIM barrel domain CDG55_09670 PF00391 PEP-utilising enzyme, mobile domain CDG55_09680 PF06481 COX Aromatic Rich Motif CDG55_09680 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDG55_09685 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDG55_09690 PF00510 Cytochrome c oxidase subunit III CDG55_09695 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDG55_09700 PF01040 UbiA prenyltransferase family CDG55_09715 PF01250 Ribosomal protein S6 CDG55_09720 PF01084 Ribosomal protein S18 CDG55_09725 PF01281 Ribosomal protein L9, N-terminal domain CDG55_09725 PF03948 Ribosomal protein L9, C-terminal domain CDG55_09730 PF03796 DnaB-like helicase C terminal domain CDG55_09730 PF00772 DnaB-like helicase N terminal domain CDG55_09735 PF00842 Alanine racemase, C-terminal domain CDG55_09735 PF01168 Alanine racemase, N-terminal domain CDG55_09745 PF01841 Transglutaminase-like superfamily CDG55_09745 PF08379 Bacterial transglutaminase-like N-terminal region CDG55_09755 PF14403 Circularly permuted ATP-grasp type 2 CDG55_09765 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDG55_09770 PF00709 Adenylosuccinate synthetase CDG55_09775 PF13393 Histidyl-tRNA synthetase CDG55_09790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG55_09790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG55_09795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG55_09795 PF01411 tRNA synthetases class II (A) CDG55_09795 PF02272 DHHA1 domain CDG55_09800 PF13840 ACT domain CDG55_09800 PF01842 ACT domain CDG55_09800 PF00696 Amino acid kinase family CDG55_09805 PF02599 Global regulator protein family CDG55_09810 PF01351 Ribonuclease HII CDG55_09825 PF01292 Prokaryotic cytochrome b561 CDG55_09830 PF00962 Adenosine/AMP deaminase CDG55_09835 PF00860 Permease family CDG55_09860 PF00175 Oxidoreductase NAD-binding domain CDG55_09860 PF00667 FAD binding domain CDG55_09860 PF00258 Flavodoxin CDG55_09880 PF00893 Small Multidrug Resistance protein CDG55_09885 PF01134 Glucose inhibited division protein A CDG55_09885 PF13932 GidA associated domain CDG55_09905 PF02954 Bacterial regulatory protein, Fis family CDG55_09910 PF02142 MGS-like domain CDG55_09910 PF01808 AICARFT/IMPCHase bienzyme CDG55_09915 PF02844 Phosphoribosylglycinamide synthetase, N domain CDG55_09915 PF02843 Phosphoribosylglycinamide synthetase, C domain CDG55_09915 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDG55_09920 PF03180 NLPA lipoprotein CDG55_09925 PF09383 NIL domain CDG55_09925 PF00005 ABC transporter CDG55_09930 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_09945 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDG55_09945 PF00753 Metallo-beta-lactamase superfamily CDG55_09955 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDG55_09955 PF05221 S-adenosyl-L-homocysteine hydrolase CDG55_09960 PF02219 Methylenetetrahydrofolate reductase CDG55_09965 PF04452 RNA methyltransferase CDG55_09970 PF03707 Bacterial signalling protein N terminal repeat CDG55_09970 PF00563 EAL domain CDG55_09970 PF00990 Diguanylate cyclase, GGDEF domain CDG55_09975 PF01515 Phosphate acetyl/butaryl transferase CDG55_09975 PF03949 Malic enzyme, NAD binding domain CDG55_09975 PF00390 Malic enzyme, N-terminal domain CDG55_09980 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG55_09980 PF01743 Poly A polymerase head domain CDG55_09985 PF00889 Elongation factor TS CDG55_09990 PF00318 Ribosomal protein S2 CDG55_09995 PF00557 Metallopeptidase family M24 CDG55_10010 PF13737 Transposase DDE domain CDG55_10020 PF07690 Major Facilitator Superfamily CDG55_10030 PF13180 PDZ domain CDG55_10035 PF01784 NIF3 (NGG1p interacting factor 3) CDG55_10040 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDG55_10040 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDG55_10055 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CDG55_10060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDG55_10065 PF11967 Recombination protein O N terminal CDG55_10065 PF02565 Recombination protein O C terminal CDG55_10075 PF07650 KH domain CDG55_10075 PF01926 50S ribosome-binding GTPase CDG55_10080 PF14622 Ribonuclease-III-like CDG55_10080 PF00035 Double-stranded RNA binding motif CDG55_10090 PF10502 Signal peptidase, peptidase S26 CDG55_10095 PF00009 Elongation factor Tu GTP binding domain CDG55_10095 PF00679 Elongation factor G C-terminus CDG55_10095 PF03144 Elongation factor Tu domain 2 CDG55_10095 PF06421 GTP-binding protein LepA C-terminus CDG55_10105 PF13180 PDZ domain CDG55_10110 PF00890 FAD binding domain CDG55_10110 PF02910 Fumarate reductase flavoprotein C-term CDG55_10115 PF02223 Thymidylate kinase CDG55_10120 PF02618 YceG-like family CDG55_10125 PF01063 Amino-transferase class IV CDG55_10140 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_10145 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_10150 PF00005 ABC transporter CDG55_10150 PF12857 TOBE-like domain CDG55_10155 PF03466 LysR substrate binding domain CDG55_10155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_10165 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_10165 PF14602 Hexapeptide repeat of succinyl-transferase CDG55_10165 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDG55_10170 PF04055 Radical SAM superfamily CDG55_10175 PF06508 Queuosine biosynthesis protein QueC CDG55_10190 PF00578 AhpC/TSA family CDG55_10200 PF00293 NUDIX domain CDG55_10200 PF01467 Cytidylyltransferase-like CDG55_10205 PF00378 Enoyl-CoA hydratase/isomerase CDG55_10210 PF00881 Nitroreductase family CDG55_10215 PF01784 NIF3 (NGG1p interacting factor 3) CDG55_10220 PF02769 AIR synthase related protein, C-terminal domain CDG55_10220 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDG55_10220 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDG55_10230 PF01966 HD domain CDG55_10235 PF01330 RuvA N terminal domain CDG55_10235 PF07499 RuvA, C-terminal domain CDG55_10240 PF17864 RuvB AAA lid domain CDG55_10240 PF05491 RuvB C-terminal winged helix domain CDG55_10240 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDG55_10250 PF03061 Thioesterase superfamily CDG55_10255 PF01618 MotA/TolQ/ExbB proton channel family CDG55_10260 PF02472 Biopolymer transport protein ExbD/TolR CDG55_10270 PF07676 WD40-like Beta Propeller Repeat CDG55_10270 PF04052 TolB amino-terminal domain CDG55_10275 PF00691 OmpA family CDG55_10285 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDG55_10290 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG55_10290 PF00588 SpoU rRNA Methylase family CDG55_10325 PF08299 Bacterial dnaA protein helix-turn-helix CDG55_10325 PF00308 Bacterial dnaA protein CDG55_10325 PF11638 DnaA N-terminal domain CDG55_10330 PF01594 AI-2E family transporter CDG55_10335 PF02769 AIR synthase related protein, C-terminal domain CDG55_10335 PF00586 AIR synthase related protein, N-terminal domain CDG55_10340 PF00551 Formyl transferase CDG55_10350 PF12697 Alpha/beta hydrolase family CDG55_10355 PF01343 Peptidase family S49 CDG55_10355 PF06965 Na+/H+ antiporter 1 CDG55_10360 PF03279 Bacterial lipid A biosynthesis acyltransferase CDG55_10365 PF00753 Metallo-beta-lactamase superfamily CDG55_10365 PF13567 Domain of unknown function (DUF4131) CDG55_10365 PF03772 Competence protein CDG55_10370 PF00005 ABC transporter CDG55_10375 PF02687 FtsX-like permease family CDG55_10375 PF12704 MacB-like periplasmic core domain CDG55_10390 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDG55_10400 PF00266 Aminotransferase class-V CDG55_10410 PF13533 Biotin-lipoyl like CDG55_10425 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG55_10425 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG55_10435 PF00766 Electron transfer flavoprotein FAD-binding domain CDG55_10435 PF01012 Electron transfer flavoprotein domain CDG55_10440 PF01012 Electron transfer flavoprotein domain CDG55_10450 PF00589 Phage integrase family CDG55_10450 PF02899 Phage integrase, N-terminal SAM-like domain CDG55_10455 PF01810 LysE type translocator CDG55_10465 PF01678 Diaminopimelate epimerase CDG55_10470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDG55_10470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDG55_10480 PF00324 Amino acid permease CDG55_10485 PF01235 Sodium:alanine symporter family CDG55_10490 PF18073 Rubredoxin metal binding domain CDG55_10500 PF01384 Phosphate transporter family CDG55_10505 PF02574 Homocysteine S-methyltransferase CDG55_10505 PF02310 B12 binding domain CDG55_10505 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDG55_10505 PF00809 Pterin binding enzyme CDG55_10505 PF02607 B12 binding domain CDG55_10510 PF13737 Transposase DDE domain CDG55_10530 PF00582 Universal stress protein family CDG55_10545 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal CDG55_10545 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal CDG55_10550 PF12833 Helix-turn-helix domain CDG55_10550 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG55_10565 PF03459 TOBE domain CDG55_10565 PF00005 ABC transporter CDG55_10570 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_10590 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CDG55_10600 PF08212 Lipocalin-like domain CDG55_10605 PF00465 Iron-containing alcohol dehydrogenase CDG55_10615 PF00171 Aldehyde dehydrogenase family CDG55_10620 PF00324 Amino acid permease CDG55_10625 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CDG55_10630 PF04996 Succinylarginine dihydrolase CDG55_10635 PF00171 Aldehyde dehydrogenase family CDG55_10640 PF04958 Arginine N-succinyltransferase beta subunit CDG55_10645 PF00202 Aminotransferase class-III CDG55_10650 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDG55_10650 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDG55_10660 PF00106 short chain dehydrogenase CDG55_10670 PF03949 Malic enzyme, NAD binding domain CDG55_10670 PF00390 Malic enzyme, N-terminal domain CDG55_10675 PF02627 Carboxymuconolactone decarboxylase family CDG55_10685 PF16916 Dimerisation domain of Zinc Transporter CDG55_10685 PF01545 Cation efflux family CDG55_10690 PF01292 Prokaryotic cytochrome b561 CDG55_10695 PF00293 NUDIX domain CDG55_10695 PF09297 NADH pyrophosphatase zinc ribbon domain CDG55_10715 PF03449 Transcription elongation factor, N-terminal CDG55_10715 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG55_10720 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDG55_10720 PF01464 Transglycosylase SLT domain CDG55_10730 PF01171 PP-loop family CDG55_10735 PF01464 Transglycosylase SLT domain CDG55_10740 PF01435 Peptidase family M48 CDG55_10750 PF00873 AcrB/AcrD/AcrF family CDG55_10755 PF00884 Sulfatase CDG55_10760 PF04973 Nicotinamide mononucleotide transporter CDG55_10765 PF00561 alpha/beta hydrolase fold CDG55_10775 PF12034 Domain of unknown function (DUF3520) CDG55_10775 PF00092 von Willebrand factor type A domain CDG55_10775 PF12450 von Willebrand factor CDG55_10780 PF00809 Pterin binding enzyme CDG55_10790 PF01434 Peptidase family M41 CDG55_10790 PF06480 FtsH Extracellular CDG55_10790 PF17862 AAA+ lid domain CDG55_10790 PF00004 ATPase family associated with various cellular activities (AAA) CDG55_10795 PF01728 FtsJ-like methyltransferase CDG55_10800 PF01985 CRS1 / YhbY (CRM) domain CDG55_10815 PF00117 Glutamine amidotransferase class-I CDG55_10815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDG55_10820 PF02142 MGS-like domain CDG55_10820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDG55_10820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG55_10825 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG55_10825 PF03449 Transcription elongation factor, N-terminal CDG55_10835 PF00132 Bacterial transferase hexapeptide (six repeats) CDG55_10840 PF00582 Universal stress protein family CDG55_10845 PF04228 Putative neutral zinc metallopeptidase CDG55_10850 PF05661 Protein of unknown function (DUF808) CDG55_10855 PF00579 tRNA synthetases class I (W and Y) CDG55_10860 PF07290 Protein of unknown function (DUF1449) CDG55_10865 PF01145 SPFH domain / Band 7 family CDG55_10865 PF15975 Flotillin CDG55_10870 PF00549 CoA-ligase CDG55_10870 PF02629 CoA binding domain CDG55_10875 PF00549 CoA-ligase CDG55_10875 PF08442 ATP-grasp domain CDG55_10880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG55_10880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG55_10885 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG55_10885 PF02817 e3 binding domain CDG55_10885 PF00364 Biotin-requiring enzyme CDG55_10890 PF16870 2-oxoglutarate dehydrogenase C-terminal CDG55_10890 PF02779 Transketolase, pyrimidine binding domain CDG55_10890 PF16078 2-oxoglutarate dehydrogenase N-terminus CDG55_10890 PF00676 Dehydrogenase E1 component CDG55_10900 PF13085 2Fe-2S iron-sulfur cluster binding domain CDG55_10905 PF02910 Fumarate reductase flavoprotein C-term CDG55_10905 PF00890 FAD binding domain CDG55_10910 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG55_10915 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG55_10920 PF00285 Citrate synthase, C-terminal domain CDG55_10945 PF09335 SNARE associated Golgi protein CDG55_10965 PF04545 Sigma-70, region 4 CDG55_10965 PF04546 Sigma-70, non-essential region CDG55_10965 PF04539 Sigma-70 region 3 CDG55_10965 PF03979 Sigma-70 factor, region 1.1 CDG55_10965 PF00140 Sigma-70 factor, region 1.2 CDG55_10965 PF04542 Sigma-70 region 2 CDG55_10970 PF04359 Protein of unknown function (DUF493) CDG55_10975 PF03099 Biotin/lipoate A/B protein ligase family CDG55_10985 PF00465 Iron-containing alcohol dehydrogenase CDG55_10990 PF13520 Amino acid permease CDG55_10995 PF03358 NADPH-dependent FMN reductase CDG55_11000 PF01638 HxlR-like helix-turn-helix CDG55_11010 PF00588 SpoU rRNA Methylase family CDG55_11015 PF14824 Sirohaem biosynthesis protein central CDG55_11015 PF10414 Sirohaem synthase dimerisation region CDG55_11015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG55_11020 PF02403 Seryl-tRNA synthetase N-terminal domain CDG55_11020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG55_11030 PF03548 Outer membrane lipoprotein carrier protein LolA CDG55_11040 PF01016 Ribosomal L27 protein CDG55_11045 PF00829 Ribosomal prokaryotic L21 protein CDG55_11050 PF00348 Polyprenyl synthetase CDG55_11060 PF01569 PAP2 superfamily CDG55_11065 PF00529 HlyD membrane-fusion protein of T1SS CDG55_11065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG55_11070 PF00873 AcrB/AcrD/AcrF family CDG55_11075 PF02321 Outer membrane efflux protein CDG55_11080 PF01906 Putative heavy-metal-binding CDG55_11085 PF01906 Putative heavy-metal-binding CDG55_11100 PF08264 Anticodon-binding domain of tRNA CDG55_11100 PF00133 tRNA synthetases class I (I, L, M and V) CDG55_11100 PF10458 Valyl tRNA synthetase tRNA binding arm CDG55_11130 PF07694 5TMR of 5TMR-LYT CDG55_11130 PF00990 Diguanylate cyclase, GGDEF domain CDG55_11135 PF00909 Ammonium Transporter Family CDG55_11150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_11150 PF08521 Two-component sensor kinase N-terminal CDG55_11150 PF00512 His Kinase A (phospho-acceptor) domain CDG55_11155 PF00486 Transcriptional regulatory protein, C terminal CDG55_11155 PF00072 Response regulator receiver domain CDG55_11160 PF00884 Sulfatase CDG55_11160 PF08019 Phosphoethanolamine transferase EptA/EptB CDG55_11180 PF01734 Patatin-like phospholipase CDG55_11190 PF01145 SPFH domain / Band 7 family CDG55_11200 PF04237 YjbR CDG55_11205 PF00348 Polyprenyl synthetase CDG55_11210 PF04303 PrpF protein CDG55_11215 PF00324 Amino acid permease CDG55_11230 PF00120 Glutamine synthetase, catalytic domain CDG55_11235 PF01569 PAP2 superfamily CDG55_11240 PF12833 Helix-turn-helix domain CDG55_11240 PF02311 AraC-like ligand binding domain CDG55_11245 PF00171 Aldehyde dehydrogenase family CDG55_11250 PF00486 Transcriptional regulatory protein, C terminal CDG55_11250 PF00072 Response regulator receiver domain CDG55_11255 PF02702 Osmosensitive K+ channel His kinase sensor domain CDG55_11255 PF13493 Domain of unknown function (DUF4118) CDG55_11255 PF13492 GAF domain CDG55_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_11255 PF00512 His Kinase A (phospho-acceptor) domain CDG55_11260 PF02669 K+-transporting ATPase, c chain CDG55_11270 PF03814 Potassium-transporting ATPase A subunit CDG55_11285 PF01507 Phosphoadenosine phosphosulfate reductase family CDG55_11290 PF06974 Protein of unknown function (DUF1298) CDG55_11290 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CDG55_11300 PF10150 Ribonuclease E/G family CDG55_11300 PF00575 S1 RNA binding domain CDG55_11305 PF02545 Maf-like protein CDG55_11315 PF04085 rod shape-determining protein MreC CDG55_11325 PF02686 Glu-tRNAGln amidotransferase C subunit CDG55_11330 PF01425 Amidase CDG55_11335 PF02637 GatB domain CDG55_11335 PF02934 GatB/GatE catalytic domain CDG55_11355 PF05992 SbmA/BacA-like family CDG55_11360 PF01734 Patatin-like phospholipase CDG55_11365 PF01235 Sodium:alanine symporter family CDG55_11370 PF03616 Sodium/glutamate symporter CDG55_11380 PF00881 Nitroreductase family CDG55_11385 PF07690 Major Facilitator Superfamily CDG55_11390 PF12805 FUSC-like inner membrane protein yccS CDG55_11400 PF00667 FAD binding domain CDG55_11400 PF00175 Oxidoreductase NAD-binding domain CDG55_11400 PF00258 Flavodoxin CDG55_11445 PF03734 L,D-transpeptidase catalytic domain CDG55_11445 PF17969 L,D-transpeptidase C-terminal domain CDG55_11450 PF04304 Protein of unknown function (DUF454) CDG55_11460 PF08085 Entericidin EcnA/B family CDG55_11465 PF01546 Peptidase family M20/M25/M40 CDG55_11465 PF07687 Peptidase dimerisation domain CDG55_11475 PF00072 Response regulator receiver domain CDG55_11475 PF01627 Hpt domain CDG55_11475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_11475 PF01584 CheW-like domain CDG55_11480 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDG55_11480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDG55_11485 PF01584 CheW-like domain CDG55_11490 PF00072 Response regulator receiver domain CDG55_11495 PF00072 Response regulator receiver domain CDG55_11505 PF03129 Anticodon binding domain CDG55_11505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG55_11505 PF04073 Aminoacyl-tRNA editing domain CDG55_11510 PF03831 PhnA domain CDG55_11510 PF08274 PhnA Zinc-Ribbon CDG55_11530 PF01571 Aminomethyltransferase folate-binding domain CDG55_11555 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDG55_11555 PF06827 Zinc finger found in FPG and IleRS CDG55_11555 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDG55_11560 PF09312 SurA N-terminal domain CDG55_11560 PF00639 PPIC-type PPIASE domain CDG55_11570 PF01741 Large-conductance mechanosensitive channel, MscL CDG55_11580 PF00860 Permease family CDG55_11585 PF08468 Methyltransferase small domain N-terminal CDG55_11585 PF05175 Methyltransferase small domain CDG55_11590 PF00324 Amino acid permease CDG55_11595 PF01139 tRNA-splicing ligase RtcB CDG55_11600 PF00691 OmpA family CDG55_11600 PF13505 Outer membrane protein beta-barrel domain CDG55_11610 PF02803 Thiolase, C-terminal domain CDG55_11610 PF00108 Thiolase, N-terminal domain CDG55_11620 PF00893 Small Multidrug Resistance protein CDG55_11630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG55_11630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG55_11640 PF02515 CoA-transferase family III CDG55_11645 PF12833 Helix-turn-helix domain CDG55_11645 PF02311 AraC-like ligand binding domain CDG55_11650 PF02803 Thiolase, C-terminal domain CDG55_11650 PF00108 Thiolase, N-terminal domain CDG55_11655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG55_11655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG55_11655 PF00378 Enoyl-CoA hydratase/isomerase CDG55_11680 PF13673 Acetyltransferase (GNAT) domain CDG55_11690 PF03006 Haemolysin-III related CDG55_11695 PF00083 Sugar (and other) transporter CDG55_11695 PF07690 Major Facilitator Superfamily CDG55_11710 PF07516 SecA Wing and Scaffold domain CDG55_11710 PF02810 SEC-C motif CDG55_11710 PF07517 SecA DEAD-like domain CDG55_11710 PF01043 SecA preprotein cross-linking domain CDG55_11715 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG55_11715 PF00578 AhpC/TSA family CDG55_11720 PF00753 Metallo-beta-lactamase superfamily CDG55_11740 PF08245 Mur ligase middle domain CDG55_11745 PF01039 Carboxyl transferase domain CDG55_11750 PF00290 Tryptophan synthase alpha chain CDG55_11775 PF00072 Response regulator receiver domain CDG55_11775 PF00990 Diguanylate cyclase, GGDEF domain CDG55_11780 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_11785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDG55_11790 PF00593 TonB dependent receptor CDG55_11790 PF07715 TonB-dependent Receptor Plug Domain CDG55_11795 PF01923 Cobalamin adenosyltransferase CDG55_11815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDG55_11820 PF00486 Transcriptional regulatory protein, C terminal CDG55_11820 PF00072 Response regulator receiver domain CDG55_11825 PF00672 HAMP domain CDG55_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_11825 PF00512 His Kinase A (phospho-acceptor) domain CDG55_11835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_11835 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG55_11835 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_11835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_11840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_11840 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG55_11840 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_11840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_11845 PF06146 Phosphate-starvation-inducible E CDG55_11870 PF07715 TonB-dependent Receptor Plug Domain CDG55_11870 PF00593 TonB dependent receptor CDG55_11880 PF02938 GAD domain CDG55_11880 PF00152 tRNA synthetases class II (D, K and N) CDG55_11880 PF01336 OB-fold nucleic acid binding domain CDG55_11895 PF03275 UDP-galactopyranose mutase CDG55_11920 PF11380 Stealth protein CR2, conserved region 2 CDG55_11920 PF17102 Stealth protein CR3, conserved region 3 CDG55_11920 PF17103 Stealth protein CR4, conserved region 4 CDG55_11920 PF17101 Stealth protein CR1, conserved region 1 CDG55_11930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG55_11930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG55_11935 PF01063 Amino-transferase class IV CDG55_11940 PF08335 GlnD PII-uridylyltransferase CDG55_11940 PF03710 Glutamate-ammonia ligase adenylyltransferase CDG55_11945 PF13426 PAS domain CDG55_11945 PF00512 His Kinase A (phospho-acceptor) domain CDG55_11945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_11945 PF00672 HAMP domain CDG55_11950 PF02796 Helix-turn-helix domain of resolvase CDG55_11950 PF00239 Resolvase, N terminal domain CDG55_12005 PF13356 Arm DNA-binding domain CDG55_12005 PF00589 Phage integrase family CDG55_12015 PF02547 Queuosine biosynthesis protein CDG55_12030 PF01702 Queuine tRNA-ribosyltransferase CDG55_12035 PF02699 Preprotein translocase subunit CDG55_12040 PF07549 SecD/SecF GG Motif CDG55_12040 PF02355 Protein export membrane protein CDG55_12040 PF13721 SecD export protein N-terminal TM region CDG55_12045 PF02355 Protein export membrane protein CDG55_12045 PF07549 SecD/SecF GG Motif CDG55_12055 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDG55_12055 PF01926 50S ribosome-binding GTPase CDG55_12060 PF13360 PQQ-like domain CDG55_12070 PF03129 Anticodon binding domain CDG55_12070 PF13393 Histidyl-tRNA synthetase CDG55_12075 PF04551 GcpE protein CDG55_12090 PF04055 Radical SAM superfamily CDG55_12095 PF00334 Nucleoside diphosphate kinase CDG55_12100 PF04384 Iron-sulphur cluster assembly CDG55_12105 PF01569 PAP2 superfamily CDG55_12110 PF00534 Glycosyl transferases group 1 CDG55_12110 PF13439 Glycosyltransferase Family 4 CDG55_12115 PF00149 Calcineurin-like phosphoesterase CDG55_12120 PF00398 Ribosomal RNA adenine dimethylase CDG55_12125 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDG55_12135 PF00572 Ribosomal protein L13 CDG55_12140 PF00380 Ribosomal protein S9/S16 CDG55_12145 PF02798 Glutathione S-transferase, N-terminal domain CDG55_12145 PF00043 Glutathione S-transferase, C-terminal domain CDG55_12150 PF04386 Stringent starvation protein B CDG55_12180 PF02785 Biotin carboxylase C-terminal domain CDG55_12180 PF00289 Biotin carboxylase, N-terminal domain CDG55_12180 PF00364 Biotin-requiring enzyme CDG55_12180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG55_12190 PF01966 HD domain CDG55_12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_12195 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_12200 PF01039 Carboxyl transferase domain CDG55_12215 PF17932 Tetracyclin repressor-like, C-terminal domain CDG55_12215 PF00440 Bacterial regulatory proteins, tetR family CDG55_12240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_12240 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_12240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_12245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_12245 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_12245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_12290 PF01066 CDP-alcohol phosphatidyltransferase CDG55_12295 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDG55_12315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDG55_12315 PF00056 lactate/malate dehydrogenase, NAD binding domain CDG55_12325 PF01551 Peptidase family M23 CDG55_12325 PF10145 Phage-related minor tail protein CDG55_12325 PF01464 Transglycosylase SLT domain CDG55_12330 PF00919 Uncharacterized protein family UPF0004 CDG55_12330 PF04055 Radical SAM superfamily CDG55_12330 PF01938 TRAM domain CDG55_12335 PF02562 PhoH-like protein CDG55_12340 PF02130 Uncharacterized protein family UPF0054 CDG55_12370 PF09234 Domain of unknown function (DUF1963) CDG55_12375 PF00303 Thymidylate synthase CDG55_12380 PF00186 Dihydrofolate reductase CDG55_12390 PF01625 Peptide methionine sulfoxide reductase CDG55_12400 PF01618 MotA/TolQ/ExbB proton channel family CDG55_12410 PF00551 Formyl transferase CDG55_12410 PF01842 ACT domain CDG55_12415 PF08360 QacR-like protein, C-terminal region CDG55_12415 PF00440 Bacterial regulatory proteins, tetR family CDG55_12420 PF00171 Aldehyde dehydrogenase family CDG55_12425 PF00830 Ribosomal L28 family CDG55_12430 PF00471 Ribosomal protein L33 CDG55_12435 PF02254 TrkA-N domain CDG55_12435 PF00999 Sodium/hydrogen exchanger family CDG55_12445 PF01207 Dihydrouridine synthase (Dus) CDG55_12460 PF00899 ThiF family CDG55_12470 PF01026 TatD related DNase CDG55_12475 PF11738 Protein of unknown function (DUF3298) CDG55_12475 PF13739 Deacetylase PdaC CDG55_12475 PF01522 Polysaccharide deacetylase CDG55_12485 PF03144 Elongation factor Tu domain 2 CDG55_12485 PF16658 Class II release factor RF3, C-terminal domain CDG55_12485 PF00009 Elongation factor Tu GTP binding domain CDG55_12490 PF13784 Fic/DOC family N-terminal CDG55_12490 PF02661 Fic/DOC family CDG55_12505 PF18273 Type III R-M EcoP15I C-terminal domain CDG55_12505 PF01555 DNA methylase CDG55_12640 PF00593 TonB dependent receptor CDG55_12640 PF07715 TonB-dependent Receptor Plug Domain CDG55_12645 PF03358 NADPH-dependent FMN reductase CDG55_12650 PF01758 Sodium Bile acid symporter family CDG55_12660 PF01022 Bacterial regulatory protein, arsR family CDG55_12665 PF03960 ArsC family CDG55_12670 PF00561 alpha/beta hydrolase fold CDG55_12675 PF00990 Diguanylate cyclase, GGDEF domain CDG55_12675 PF03707 Bacterial signalling protein N terminal repeat CDG55_12675 PF00563 EAL domain CDG55_12680 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDG55_12680 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDG55_12685 PF10369 Small subunit of acetolactate synthase CDG55_12690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDG55_12690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDG55_12690 PF00205 Thiamine pyrophosphate enzyme, central domain CDG55_12700 PF09334 tRNA synthetases class I (M) CDG55_12700 PF08264 Anticodon-binding domain of tRNA CDG55_12700 PF00133 tRNA synthetases class I (I, L, M and V) CDG55_12700 PF13603 Leucyl-tRNA synthetase, Domain 2 CDG55_12715 PF01814 Hemerythrin HHE cation binding domain CDG55_12720 PF02146 Sir2 family CDG55_12725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG55_12730 PF00005 ABC transporter CDG55_12730 PF12704 MacB-like periplasmic core domain CDG55_12730 PF02687 FtsX-like permease family CDG55_12735 PF02321 Outer membrane efflux protein CDG55_12775 PF13361 UvrD-like helicase C-terminal domain CDG55_12775 PF00580 UvrD/REP helicase N-terminal domain CDG55_12795 PF01751 Toprim domain CDG55_12795 PF01131 DNA topoisomerase CDG55_12795 PF08272 Topoisomerase I zinc-ribbon-like CDG55_12795 PF01396 Topoisomerase DNA binding C4 zinc finger CDG55_12820 PF01661 Macro domain CDG55_12825 PF03279 Bacterial lipid A biosynthesis acyltransferase CDG55_12835 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG55_12835 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG55_12855 PF01416 tRNA pseudouridine synthase CDG55_12865 PF01176 Translation initiation factor 1A / IF-1 CDG55_12880 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG55_12890 PF00694 Aconitase C-terminal domain CDG55_12895 PF00330 Aconitase family (aconitate hydratase) CDG55_12905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_12905 PF03466 LysR substrate binding domain CDG55_12935 PF00293 NUDIX domain CDG55_12940 PF01590 GAF domain CDG55_12940 PF05524 PEP-utilising enzyme, N-terminal CDG55_12940 PF00391 PEP-utilising enzyme, mobile domain CDG55_12940 PF02896 PEP-utilising enzyme, TIM barrel domain CDG55_12945 PF06628 Catalase-related immune-responsive CDG55_12945 PF00199 Catalase CDG55_12960 PF12706 Beta-lactamase superfamily domain CDG55_12965 PF03466 LysR substrate binding domain CDG55_12965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_12980 PF13419 Haloacid dehalogenase-like hydrolase CDG55_12985 PF00849 RNA pseudouridylate synthase CDG55_12985 PF01479 S4 domain CDG55_12995 PF12111 Polyribonucleotide phosphorylase C terminal CDG55_12995 PF10150 Ribonuclease E/G family CDG55_12995 PF00575 S1 RNA binding domain CDG55_13000 PF00501 AMP-binding enzyme CDG55_13000 PF13193 AMP-binding enzyme C-terminal domain CDG55_13015 PF06969 HemN C-terminal domain CDG55_13015 PF04055 Radical SAM superfamily CDG55_13025 PF01554 MatE CDG55_13030 PF03109 ABC1 family CDG55_13035 PF01197 Ribosomal protein L31 CDG55_13045 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDG55_13065 PF01613 Flavin reductase like domain CDG55_13085 PF03884 DNA gyrase inhibitor YacG CDG55_13090 PF00753 Metallo-beta-lactamase superfamily CDG55_13095 PF00762 Ferrochelatase CDG55_13105 PF01177 Asp/Glu/Hydantoin racemase CDG55_13130 PF08281 Sigma-70, region 4 CDG55_13130 PF04542 Sigma-70 region 2 CDG55_13140 PF05114 Protein of unknown function (DUF692) CDG55_13155 PF01810 LysE type translocator CDG55_13160 PF01206 Sulfurtransferase TusA CDG55_13165 PF00571 CBS domain CDG55_13165 PF03471 Transporter associated domain CDG55_13170 PF00795 Carbon-nitrogen hydrolase CDG55_13180 PF07963 Prokaryotic N-terminal methylation motif CDG55_13180 PF08334 Type II secretion system (T2SS), protein G CDG55_13185 PF00482 Type II secretion system (T2SS), protein F CDG55_13190 PF17764 3′ DNA-binding domain (3′BD) CDG55_13190 PF00270 DEAD/DEAH box helicase CDG55_13190 PF00271 Helicase conserved C-terminal domain CDG55_13190 PF18074 Primosomal protein N C-terminal domain CDG55_13190 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDG55_13195 PF00593 TonB dependent receptor CDG55_13195 PF07715 TonB-dependent Receptor Plug Domain CDG55_13200 PF00999 Sodium/hydrogen exchanger family CDG55_13200 PF02254 TrkA-N domain CDG55_13205 PF01430 Hsp33 protein CDG55_13210 PF00226 DnaJ domain CDG55_13210 PF01556 DnaJ C terminal domain CDG55_13220 PF01544 CorA-like Mg2+ transporter protein CDG55_13225 PF00375 Sodium:dicarboxylate symporter family CDG55_13230 PF00013 KH domain CDG55_13230 PF00575 S1 RNA binding domain CDG55_13230 PF03725 3' exoribonuclease family, domain 2 CDG55_13230 PF01138 3' exoribonuclease family, domain 1 CDG55_13230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDG55_13235 PF00312 Ribosomal protein S15 CDG55_13245 PF13538 UvrD-like helicase C-terminal domain CDG55_13250 PF13361 UvrD-like helicase C-terminal domain CDG55_13250 PF00580 UvrD/REP helicase N-terminal domain CDG55_13250 PF12705 PD-(D/E)XK nuclease superfamily CDG55_13255 PF17946 RecC C-terminal domain CDG55_13265 PF03976 Polyphosphate kinase 2 (PPK2) CDG55_13275 PF01209 ubiE/COQ5 methyltransferase family CDG55_13285 PF03109 ABC1 family CDG55_13305 PF01502 Phosphoribosyl-AMP cyclohydrolase CDG55_13315 PF02463 RecF/RecN/SMC N terminal domain CDG55_13320 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDG55_13320 PF00361 Proton-conducting membrane transporter CDG55_13320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG55_13320 PF13244 Domain of unknown function (DUF4040) CDG55_13325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG55_13330 PF00361 Proton-conducting membrane transporter CDG55_13340 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDG55_13350 PF02033 Ribosome-binding factor A CDG55_13355 PF00009 Elongation factor Tu GTP binding domain CDG55_13355 PF04760 Translation initiation factor IF-2, N-terminal region CDG55_13355 PF11987 Translation-initiation factor 2 CDG55_13355 PF08364 Bacterial translation initiation factor IF-2 associated region CDG55_13360 PF13184 NusA-like KH domain CDG55_13360 PF08529 NusA N-terminal domain CDG55_13360 PF00575 S1 RNA binding domain CDG55_13365 PF17384 RimP C-terminal SH3 domain CDG55_13365 PF02576 RimP N-terminal domain CDG55_13385 PF03840 Preprotein translocase SecG subunit CDG55_13390 PF00121 Triosephosphate isomerase CDG55_13395 PF00437 Type II/IV secretion system protein CDG55_13395 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDG55_13400 PF00482 Type II secretion system (T2SS), protein F CDG55_13405 PF06750 Bacterial Peptidase A24 N-terminal domain CDG55_13405 PF01478 Type IV leader peptidase family CDG55_13410 PF01121 Dephospho-CoA kinase CDG55_13420 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG55_13420 PF00588 SpoU rRNA Methylase family CDG55_13425 PF06865 Pyrimidine/purine nucleoside phosphorylase CDG55_13430 PF02463 RecF/RecN/SMC N terminal domain CDG55_13435 PF02622 Uncharacterized ACR, COG1678 CDG55_13440 PF03652 Holliday junction resolvase CDG55_13445 PF13533 Biotin-lipoyl like CDG55_13475 PF01625 Peptide methionine sulfoxide reductase CDG55_13485 PF01641 SelR domain CDG55_13490 PF00462 Glutaredoxin CDG55_13495 PF01625 Peptide methionine sulfoxide reductase CDG55_13500 PF12833 Helix-turn-helix domain CDG55_13500 PF02311 AraC-like ligand binding domain CDG55_13525 PF00108 Thiolase, N-terminal domain CDG55_13525 PF02803 Thiolase, C-terminal domain CDG55_13530 PF00378 Enoyl-CoA hydratase/isomerase CDG55_13530 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG55_13530 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG55_13550 PF01066 CDP-alcohol phosphatidyltransferase CDG55_13560 PF02151 UvrB/uvrC motif CDG55_13560 PF01541 GIY-YIG catalytic domain CDG55_13560 PF08459 UvrC Helix-hairpin-helix N-terminal CDG55_13570 PF00990 Diguanylate cyclase, GGDEF domain CDG55_13575 PF00378 Enoyl-CoA hydratase/isomerase CDG55_13575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG55_13575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG55_13580 PF00108 Thiolase, N-terminal domain CDG55_13580 PF02803 Thiolase, C-terminal domain CDG55_13600 PF01323 DSBA-like thioredoxin domain CDG55_13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_13620 PF00183 Hsp90 protein CDG55_13635 PF13726 Na+-H+ antiporter family CDG55_13635 PF03553 Na+/H+ antiporter family CDG55_13655 PF04997 RNA polymerase Rpb1, domain 1 CDG55_13655 PF00623 RNA polymerase Rpb1, domain 2 CDG55_13655 PF05000 RNA polymerase Rpb1, domain 4 CDG55_13655 PF04998 RNA polymerase Rpb1, domain 5 CDG55_13655 PF04983 RNA polymerase Rpb1, domain 3 CDG55_13660 PF04561 RNA polymerase Rpb2, domain 2 CDG55_13660 PF04563 RNA polymerase beta subunit CDG55_13660 PF04560 RNA polymerase Rpb2, domain 7 CDG55_13660 PF04565 RNA polymerase Rpb2, domain 3 CDG55_13660 PF00562 RNA polymerase Rpb2, domain 6 CDG55_13660 PF10385 RNA polymerase beta subunit external 1 domain CDG55_13665 PF00542 Ribosomal protein L7/L12 C-terminal domain CDG55_13665 PF16320 Ribosomal protein L7/L12 dimerisation domain CDG55_13670 PF00466 Ribosomal protein L10 CDG55_13675 PF00687 Ribosomal protein L1p/L10e family CDG55_13680 PF00298 Ribosomal protein L11, RNA binding domain CDG55_13680 PF03946 Ribosomal protein L11, N-terminal domain CDG55_13685 PF00467 KOW motif CDG55_13685 PF02357 Transcription termination factor nusG CDG55_13690 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDG55_13700 PF03143 Elongation factor Tu C-terminal domain CDG55_13700 PF03144 Elongation factor Tu domain 2 CDG55_13700 PF00009 Elongation factor Tu GTP binding domain CDG55_13725 PF04715 Anthranilate synthase component I, N terminal region CDG55_13725 PF00425 chorismate binding enzyme CDG55_13730 PF13419 Haloacid dehalogenase-like hydrolase CDG55_13740 PF03958 Bacterial type II/III secretion system short domain CDG55_13740 PF00263 Bacterial type II and III secretion system protein CDG55_13755 PF00816 H-NS histone family CDG55_13780 PF03900 Porphobilinogen deaminase, C-terminal domain CDG55_13780 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDG55_13785 PF04397 LytTr DNA-binding domain CDG55_13785 PF00072 Response regulator receiver domain CDG55_13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_13790 PF06580 Histidine kinase CDG55_13790 PF07694 5TMR of 5TMR-LYT CDG55_13795 PF14698 Argininosuccinate lyase C-terminal CDG55_13795 PF00206 Lyase CDG55_13800 PF04362 Bacterial Fe(2+) trafficking CDG55_13805 PF01895 PhoU domain CDG55_13810 PF01964 Radical SAM ThiC family CDG55_13810 PF13667 ThiC-associated domain CDG55_13815 PF00293 NUDIX domain CDG55_13820 PF00149 Calcineurin-like phosphoesterase CDG55_13825 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDG55_13830 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG55_13835 PF01098 Cell cycle protein CDG55_13840 PF02875 Mur ligase family, glutamate ligase domain CDG55_13840 PF08245 Mur ligase middle domain CDG55_13855 PF02421 Ferrous iron transport protein B CDG55_13855 PF07664 Ferrous iron transport protein B C terminus CDG55_13855 PF07670 Nucleoside recognition CDG55_13865 PF00589 Phage integrase family CDG55_13865 PF02899 Phage integrase, N-terminal SAM-like domain CDG55_13870 PF13098 Thioredoxin-like domain CDG55_13870 PF10411 Disulfide bond isomerase protein N-terminus CDG55_13875 PF00742 Homoserine dehydrogenase CDG55_13875 PF03447 Homoserine dehydrogenase, NAD binding domain CDG55_13875 PF01842 ACT domain CDG55_13880 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_13890 PF00768 D-alanyl-D-alanine carboxypeptidase CDG55_13895 PF00196 Bacterial regulatory proteins, luxR family CDG55_13895 PF00072 Response regulator receiver domain CDG55_13900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_13900 PF00512 His Kinase A (phospho-acceptor) domain CDG55_13905 PF02954 Bacterial regulatory protein, Fis family CDG55_13905 PF00072 Response regulator receiver domain CDG55_13905 PF00158 Sigma-54 interaction domain CDG55_13910 PF13180 PDZ domain CDG55_13910 PF03572 Peptidase family S41 CDG55_13915 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CDG55_13915 PF01676 Metalloenzyme superfamily CDG55_13920 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG55_13925 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG55_13930 PF00883 Cytosol aminopeptidase family, catalytic domain CDG55_13930 PF02789 Cytosol aminopeptidase family, N-terminal domain CDG55_13945 PF00677 Lumazine binding domain CDG55_13960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDG55_13960 PF01872 RibD C-terminal domain CDG55_13965 PF03477 ATP cone domain CDG55_13970 PF00909 Ammonium Transporter Family CDG55_13975 PF00543 Nitrogen regulatory protein P-II CDG55_13985 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDG55_13985 PF01078 Magnesium chelatase, subunit ChlI CDG55_14000 PF03573 outer membrane porin, OprD family CDG55_14005 PF00719 Inorganic pyrophosphatase CDG55_14020 PF00501 AMP-binding enzyme CDG55_14020 PF13193 AMP-binding enzyme C-terminal domain CDG55_14025 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG55_14025 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG55_14030 PF03458 UPF0126 domain CDG55_14035 PF02810 SEC-C motif CDG55_14040 PF03741 Integral membrane protein TerC family CDG55_14040 PF03471 Transporter associated domain CDG55_14045 PF03641 Possible lysine decarboxylase CDG55_14055 PF07690 Major Facilitator Superfamily CDG55_14065 PF11798 IMS family HHH motif CDG55_14065 PF11799 impB/mucB/samB family C-terminal domain CDG55_14065 PF00817 impB/mucB/samB family CDG55_14070 PF00486 Transcriptional regulatory protein, C terminal CDG55_14070 PF00072 Response regulator receiver domain CDG55_14080 PF00672 HAMP domain CDG55_14080 PF00512 His Kinase A (phospho-acceptor) domain CDG55_14080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_14085 PF06123 Inner membrane protein CreD CDG55_14105 PF08497 Radical SAM N-terminal CDG55_14105 PF04055 Radical SAM superfamily CDG55_14105 PF11842 Domain of unknown function (DUF3362) CDG55_14115 PF07690 Major Facilitator Superfamily CDG55_14125 PF00291 Pyridoxal-phosphate dependent enzyme CDG55_14160 PF02028 BCCT, betaine/carnitine/choline family transporter CDG55_14180 PF00474 Sodium:solute symporter family CDG55_14185 PF04341 Protein of unknown function, DUF485 CDG55_14190 PF00512 His Kinase A (phospho-acceptor) domain CDG55_14190 PF09456 RcsC Alpha-Beta-Loop (ABL) CDG55_14190 PF00072 Response regulator receiver domain CDG55_14190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG55_14210 PF01327 Polypeptide deformylase CDG55_14215 PF01476 LysM domain CDG55_14220 PF02481 DNA recombination-mediator protein A CDG55_14220 PF17782 DprA winged helix domain CDG55_14225 PF01300 Telomere recombination CDG55_14245 PF00255 Glutathione peroxidase CDG55_14255 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDG55_14260 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG55_14260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG55_14265 PF00231 ATP synthase CDG55_14270 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG55_14270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG55_14270 PF00306 ATP synthase alpha/beta chain, C terminal domain CDG55_14275 PF00213 ATP synthase delta (OSCP) subunit CDG55_14280 PF00430 ATP synthase B/B' CF(0) CDG55_14285 PF00137 ATP synthase subunit C CDG55_14290 PF00119 ATP synthase A chain CDG55_14310 PF00005 ABC transporter CDG55_14315 PF00950 ABC 3 transport family CDG55_14320 PF04261 Dyp-type peroxidase family CDG55_14330 PF05746 DALR anticodon binding domain CDG55_14330 PF03485 Arginyl tRNA synthetase N terminal domain CDG55_14330 PF00750 tRNA synthetases class I (R) CDG55_14350 PF02678 Pirin CDG55_14350 PF05726 Pirin C-terminal cupin domain CDG55_14370 PF00117 Glutamine amidotransferase class-I CDG55_14370 PF02540 NAD synthase CDG55_14370 PF00958 GMP synthase C terminal domain CDG55_14385 PF04286 Protein of unknown function (DUF445) CDG55_14395 PF07681 DoxX CDG55_14400 PF09335 SNARE associated Golgi protein CDG55_14415 PF13614 AAA domain CDG55_14425 PF01722 BolA-like protein CDG55_14460 PF07120 Protein of unknown function (DUF1376) CDG55_14475 PF09615 CRISPR-associated protein (Cas_Csy3) CDG55_14480 PF09614 CRISPR-associated protein (Cas_Csy2) CDG55_14485 PF09611 CRISPR-associated protein (Cas_Csy1) CDG55_14490 PF18019 HD domain CDG55_14495 PF01867 CRISPR associated protein Cas1 CDG55_14520 PF00176 SNF2 family N-terminal domain CDG55_14520 PF12419 SNF2 Helicase protein CDG55_14520 PF00271 Helicase conserved C-terminal domain CDG55_14530 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CDG55_14575 PF04221 RelB antitoxin CDG55_14580 PF03471 Transporter associated domain CDG55_14580 PF03741 Integral membrane protein TerC family CDG55_14615 PF00324 Amino acid permease CDG55_14620 PF01042 Endoribonuclease L-PSP CDG55_14625 PF01168 Alanine racemase, N-terminal domain CDG55_14625 PF00842 Alanine racemase, C-terminal domain CDG55_14630 PF01266 FAD dependent oxidoreductase CDG55_14635 PF01037 Lrp/AsnC ligand binding domain CDG55_14645 PF00849 RNA pseudouridylate synthase CDG55_14675 PF02463 RecF/RecN/SMC N terminal domain CDG55_14680 PF00694 Aconitase C-terminal domain CDG55_14680 PF00330 Aconitase family (aconitate hydratase) CDG55_14685 PF00285 Citrate synthase, C-terminal domain CDG55_14695 PF07729 FCD domain CDG55_14695 PF00392 Bacterial regulatory proteins, gntR family CDG55_14700 PF00155 Aminotransferase class I and II CDG55_14705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG55_14705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG55_14705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG55_14705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG55_14710 PF16363 GDP-mannose 4,6 dehydratase CDG55_14715 PF00342 Phosphoglucose isomerase CDG55_14720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG55_14720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG55_14720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG55_14725 PF00483 Nucleotidyl transferase CDG55_14730 PF02719 Polysaccharide biosynthesis protein CDG55_14740 PF00953 Glycosyl transferase family 4 CDG55_14745 PF01370 NAD dependent epimerase/dehydratase family CDG55_14750 PF13579 Glycosyl transferase 4-like domain CDG55_14755 PF02350 UDP-N-acetylglucosamine 2-epimerase CDG55_14760 PF01370 NAD dependent epimerase/dehydratase family CDG55_14765 PF02719 Polysaccharide biosynthesis protein CDG55_14765 PF08485 Polysaccharide biosynthesis protein C-terminal CDG55_14775 PF00535 Glycosyl transferase family 2 CDG55_14785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG55_14785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG55_14785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG55_14795 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG55_14795 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG55_14795 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG55_14805 PF02563 Polysaccharide biosynthesis/export protein CDG55_14805 PF10531 SLBB domain CDG55_14805 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CDG55_14810 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG55_14815 PF02706 Chain length determinant protein CDG55_14815 PF13807 G-rich domain on putative tyrosine kinase CDG55_14815 PF13614 AAA domain CDG55_14820 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG55_14820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_14825 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG55_14825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_14830 PF03023 Lipid II flippase MurJ CDG55_14835 PF01510 N-acetylmuramoyl-L-alanine amidase CDG55_14840 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDG55_14840 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDG55_14845 PF03725 3' exoribonuclease family, domain 2 CDG55_14845 PF01138 3' exoribonuclease family, domain 1 CDG55_14850 PF00487 Fatty acid desaturase CDG55_14855 PF00175 Oxidoreductase NAD-binding domain CDG55_14860 PF00440 Bacterial regulatory proteins, tetR family CDG55_14865 PF08360 QacR-like protein, C-terminal region CDG55_14865 PF00440 Bacterial regulatory proteins, tetR family CDG55_14870 PF01323 DSBA-like thioredoxin domain CDG55_14880 PF13419 Haloacid dehalogenase-like hydrolase CDG55_14885 PF00106 short chain dehydrogenase CDG55_14895 PF00696 Amino acid kinase family CDG55_14895 PF00583 Acetyltransferase (GNAT) family CDG55_14900 PF09084 NMT1/THI5 like CDG55_14905 PF00296 Luciferase-like monooxygenase CDG55_14910 PF00528 Binding-protein-dependent transport system inner membrane component CDG55_14915 PF00005 ABC transporter CDG55_14920 PF17938 Tetracyclin repressor-like, C-terminal domain CDG55_14920 PF00440 Bacterial regulatory proteins, tetR family CDG55_14925 PF00990 Diguanylate cyclase, GGDEF domain CDG55_14925 PF05230 MASE2 domain CDG55_14930 PF01048 Phosphorylase superfamily CDG55_14935 PF06574 FAD synthetase CDG55_14935 PF01687 Riboflavin kinase CDG55_14940 PF08264 Anticodon-binding domain of tRNA CDG55_14940 PF00133 tRNA synthetases class I (I, L, M and V) CDG55_14940 PF06827 Zinc finger found in FPG and IleRS CDG55_14945 PF01252 Signal peptidase (SPase) II CDG55_14950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG55_14955 PF03358 NADPH-dependent FMN reductase CDG55_14995 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG55_15000 PF07859 alpha/beta hydrolase fold CDG55_15015 PF01025 GrpE CDG55_15020 PF00012 Hsp70 protein CDG55_15045 PF13406 Transglycosylase SLT domain CDG55_15050 PF02222 ATP-grasp domain CDG55_15050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDG55_15055 PF00731 AIR carboxylase CDG55_15065 PF08245 Mur ligase middle domain CDG55_15065 PF02875 Mur ligase family, glutamate ligase domain CDG55_15065 PF01225 Mur ligase family, catalytic domain CDG55_15075 PF00106 short chain dehydrogenase CDG55_15090 PF02770 Acyl-CoA dehydrogenase, middle domain CDG55_15090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG55_15090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG55_15095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG55_15095 PF03466 LysR substrate binding domain CDG55_15100 PF03741 Integral membrane protein TerC family CDG55_15110 PF03738 Glutathionylspermidine synthase preATP-grasp CDG55_15120 PF01979 Amidohydrolase family CDG55_15125 PF00156 Phosphoribosyl transferase domain CDG55_15135 PF13098 Thioredoxin-like domain CDG55_15135 PF10411 Disulfide bond isomerase protein N-terminus CDG55_15140 PF00437 Type II/IV secretion system protein CDG55_15150 PF01926 50S ribosome-binding GTPase CDG55_15150 PF12631 MnmE helical domain CDG55_15150 PF10396 GTP-binding protein TrmE N-terminus CDG55_15155 PF02096 60Kd inner membrane protein CDG55_15155 PF14849 YidC periplasmic domain CDG55_15160 PF01809 Putative membrane protein insertion efficiency factor CDG55_15165 PF00825 Ribonuclease P CDG55_15170 PF00468 Ribosomal protein L34